BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023471
(281 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255540783|ref|XP_002511456.1| Endonuclease III, putative [Ricinus communis]
gi|223550571|gb|EEF52058.1| Endonuclease III, putative [Ricinus communis]
Length = 291
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/289 (70%), Positives = 230/289 (79%), Gaps = 16/289 (5%)
Query: 1 MQKSRKRK-QVEVTETR---------QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVK 50
MQK+RKRK + TET+ ++PYPTH RPT EEC IRD LLA HGFP EF K
Sbjct: 1 MQKNRKRKLKSAETETKSAKINNGNKEEPYPTHPRPTPEECLCIRDSLLAFHGFPQEFAK 60
Query: 51 YRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKST 110
YR QRL D ++ D+N + EE+VLDGLVKTVLSQNTTE NS +AF +LKS
Sbjct: 61 YRKQRLGG----DDDNKSSDVNS--DTAEETVLDGLVKTVLSQNTTEVNSQRAFDNLKSD 114
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIK 170
FPTW+ VLAAE K IENAIRCGGLAP KA+CIKNIL CLLE KGK+CLEYLR +S+DEIK
Sbjct: 115 FPTWQDVLAAEPKWIENAIRCGGLAPAKASCIKNILNCLLEKKGKICLEYLRDMSVDEIK 174
Query: 171 AELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRI 230
AELS+F+G+GPKTVACVLMFHLQQ+DFPVDTHVFEI+KA+GWVP ADRNKTYLHLNQRI
Sbjct: 175 AELSQFKGVGPKTVACVLMFHLQQEDFPVDTHVFEIAKALGWVPEVADRNKTYLHLNQRI 234
Query: 231 PKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSN 279
P ELKFDLNCLLYTHGKLCR CIKK GN+ RKES + CPLL+YC S+
Sbjct: 235 PNELKFDLNCLLYTHGKLCRKCIKKRGNQSRKESHDDSCPLLSYCNSSS 283
>gi|224133424|ref|XP_002321564.1| predicted protein [Populus trichocarpa]
gi|222868560|gb|EEF05691.1| predicted protein [Populus trichocarpa]
Length = 309
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/307 (64%), Positives = 221/307 (71%), Gaps = 30/307 (9%)
Query: 1 MQKSRKRKQVEVTETR--------------QDPYPTHSRPTAEECRGIRDELLALHGFPP 46
MQ KRKQ + R ++P+PTH+RPT EECR IRD LLA HGFP
Sbjct: 1 MQTGHKRKQQHELKPRTNKKSAETISNIKEEEPFPTHARPTPEECRAIRDSLLAFHGFPQ 60
Query: 47 EFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEE----------------SVLDGLVKTV 90
EF KYR QR +DK P +N D + S LDGLVKTV
Sbjct: 61 EFAKYRKQRPYLITLQDKEESPHLINNCDGKNDNVVKVEEEEEEEEEEEESALDGLVKTV 120
Query: 91 LSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLL 150
LSQNTTE NS +AF +LKS FPTWE+VLAAE K IE+AIRCGGLAPTKAACI+NIL L+
Sbjct: 121 LSQNTTEVNSQRAFLNLKSAFPTWENVLAAESKFIEDAIRCGGLAPTKAACIRNILSSLM 180
Query: 151 ESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAI 210
E KG+LCLEYLR L + EIKAELS F+GIGPKTVACVLMF+LQ+DDFPVDTHVFEI+KAI
Sbjct: 181 EKKGRLCLEYLRDLPVAEIKAELSHFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKAI 240
Query: 211 GWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCP 270
GWVP ADRNKTYLHLN RIPKELKFDLNCLLYTHGKLCR C KK G++QRKE+ + CP
Sbjct: 241 GWVPPVADRNKTYLHLNHRIPKELKFDLNCLLYTHGKLCRKCTKKSGSQQRKETHDDSCP 300
Query: 271 LLNYCEK 277
LLNYC K
Sbjct: 301 LLNYCVK 307
>gi|357477261|ref|XP_003608916.1| Ultraviolet N-glycosylase/AP lyase [Medicago truncatula]
gi|355509971|gb|AES91113.1| Ultraviolet N-glycosylase/AP lyase [Medicago truncatula]
Length = 280
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/290 (65%), Positives = 216/290 (74%), Gaps = 31/290 (10%)
Query: 1 MQKSRKRK------------QVEV----TETRQDPYPTHSRPTAEECRGIRDELLALHGF 44
M+K RKRK V+V TE ++P+P+HS PT +EC IRD LL+LHG
Sbjct: 1 MEKKRKRKVKTERDGDRNPNSVQVPQIKTENPKNPFPSHSAPTPQECLEIRDNLLSLHGI 60
Query: 45 PPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAF 104
PPE KYR K T D P E+VLDGLV+T+LSQNTTEANS KAF
Sbjct: 61 PPELAKYR----KSQQTNDTVEPP-----------ETVLDGLVRTILSQNTTEANSNKAF 105
Query: 105 ASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGL 164
ASLKS FPTWEHV AE K +ENAIRCGGLAPTKA CIKN+L CLLE KGK+CLEYLR L
Sbjct: 106 ASLKSLFPTWEHVHGAESKELENAIRCGGLAPTKAKCIKNLLSCLLERKGKMCLEYLRDL 165
Query: 165 SIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYL 224
S+DE+KAELS F+GIGPKTV+CVLMF+LQ DDFPVDTH+FEI+K +GWVP AADRNKTYL
Sbjct: 166 SVDEVKAELSLFKGIGPKTVSCVLMFNLQLDDFPVDTHIFEIAKTMGWVPAAADRNKTYL 225
Query: 225 HLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNY 274
HLNQRIP ELKFDLNCLLYTHGKLC NC K GN+Q+K+ + CPLLNY
Sbjct: 226 HLNQRIPDELKFDLNCLLYTHGKLCSNCSSKRGNKQQKKFNDSSCPLLNY 275
>gi|225457138|ref|XP_002283633.1| PREDICTED: endonuclease III-like [Vitis vinifera]
Length = 310
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/300 (63%), Positives = 219/300 (73%), Gaps = 25/300 (8%)
Query: 1 MQKSRKRKQVEV-------------TETRQDPYPTHSRPTAEECRGIRDELLALHGFPPE 47
MQ+SRKRKQ E + DPYP+H RPT ECR +RD+LLALHGFP
Sbjct: 1 MQRSRKRKQEESSSCSKESATKSARNDVVVDPYPSHPRPTPVECRAVRDDLLALHGFPQR 60
Query: 48 FVKYRNQRLK---HNMTRDKNS-----VPLDMNEYDE----GEEESVLDGLVKTVLSQNT 95
F KYR RL H + + V LD ++ D+ ++ESVLDGLV +LSQNT
Sbjct: 61 FEKYRKLRLPPLPHTSSPGLDGGGGTPVKLDPSDGDDVNGSSQKESVLDGLVSIILSQNT 120
Query: 96 TEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGK 155
T+ NS +AFASLKS FPTW+ VLAA+ K IENAIRCGGLA TKA+CIK +L CLLE KGK
Sbjct: 121 TDVNSQRAFASLKSAFPTWQDVLAADSKSIENAIRCGGLAVTKASCIKKMLSCLLERKGK 180
Query: 156 LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPT 215
LCLEYLR L++DEIK ELS F+GIGPKTVACVLMFHLQ+DDFPVDTHV +I KAIGWVP
Sbjct: 181 LCLEYLRDLTVDEIKTELSHFKGIGPKTVACVLMFHLQRDDFPVDTHVIQIGKAIGWVPA 240
Query: 216 AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
ADR K YLHLN+RIP ELKFDLNCLL+THGKLC C +KG N++RKES + CPLL YC
Sbjct: 241 VADRKKAYLHLNRRIPDELKFDLNCLLFTHGKLCHECTQKGANQKRKESHESSCPLLTYC 300
>gi|297733838|emb|CBI15085.3| unnamed protein product [Vitis vinifera]
Length = 310
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/300 (63%), Positives = 219/300 (73%), Gaps = 25/300 (8%)
Query: 1 MQKSRKRKQVEV-------------TETRQDPYPTHSRPTAEECRGIRDELLALHGFPPE 47
MQ+SRKRKQ E + DPYP+H RPT ECR +RD+LLALHGFP
Sbjct: 1 MQRSRKRKQEESSSCSKESATKSARNDVVVDPYPSHPRPTPVECRAVRDDLLALHGFPQR 60
Query: 48 FVKYRNQRLK---HNMTRDKNS-----VPLDMNEYDE----GEEESVLDGLVKTVLSQNT 95
F KYR RL H + + V LD ++ D+ ++ESVLDGLV +LSQNT
Sbjct: 61 FEKYRKLRLPPLPHTSSPGLDGGGGTPVKLDPSDGDDVNGSSQKESVLDGLVSIILSQNT 120
Query: 96 TEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGK 155
T+ NS +AFASLKS FPTW+ VLAA+ K IENAIRCGGLA TKA+CIK +L CLLE KGK
Sbjct: 121 TDVNSQRAFASLKSAFPTWQDVLAADSKSIENAIRCGGLAVTKASCIKKMLSCLLERKGK 180
Query: 156 LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPT 215
LCLEYLR L++DEIK ELS F+GIGPKTVACVLMFHLQ+DDFPVDTHV +I KAIGWVP
Sbjct: 181 LCLEYLRDLTVDEIKTELSHFKGIGPKTVACVLMFHLQRDDFPVDTHVIQIGKAIGWVPA 240
Query: 216 AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
ADR K YLHLN+RIP ELKFDLNCLL+THGKLC C +KG N++RKES + CPLL YC
Sbjct: 241 VADRKKAYLHLNRRIPDELKFDLNCLLFTHGKLCHECTQKGANQKRKESHESSCPLLTYC 300
>gi|297815970|ref|XP_002875868.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321706|gb|EFH52127.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 294
Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 180/292 (61%), Positives = 214/292 (73%), Gaps = 16/292 (5%)
Query: 1 MQKSRKRKQ------------VEVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEF 48
M K++KRK+ ++ T +PYPT RPTAEECR +RD LL+LHGFPPEF
Sbjct: 1 MSKAQKRKRLNQDDGESKTPAIKSTVDGSNPYPTLLRPTAEECREVRDALLSLHGFPPEF 60
Query: 49 VKYRNQRLKHNMTRDKNSVPLDMNE--YDEGEEESVLDGLVKTVLSQNTTEANSLKAFAS 106
YR QRL+ D + M DE EEESVLDGLVK +LSQNTTE+NS +AFAS
Sbjct: 61 ANYRRQRLRSLSAVDGHDTQCTMKSEPLDEAEEESVLDGLVKILLSQNTTESNSQRAFAS 120
Query: 107 LKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSI 166
LK+ FP WE VLAAE K IE+AIRCGGLAP KA CIKNIL L +G LCLEYLRGLS+
Sbjct: 121 LKAAFPNWEDVLAAESKSIESAIRCGGLAPKKAVCIKNILNRLQTERGVLCLEYLRGLSV 180
Query: 167 DEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHL 226
+E+K ELS F+GIGPKTV+CVLMF+LQ +DFPVDTHVFEI+KA+GWVP ADRNKTY+HL
Sbjct: 181 EEVKTELSHFKGIGPKTVSCVLMFNLQHNDFPVDTHVFEIAKALGWVPKTADRNKTYVHL 240
Query: 227 NQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKE--SAGNLCPLLNYCE 276
N+RIP ELKFDLNCLLYTHGKLC NC K + K ++ + CPL+ + +
Sbjct: 241 NRRIPDELKFDLNCLLYTHGKLCSNCKKTVAKPKAKARVASPDECPLVGFSD 292
>gi|18408516|ref|NP_566893.1| HhH-GPD base excision DNA repair protein-related protein
[Arabidopsis thaliana]
gi|332644814|gb|AEE78335.1| HhH-GPD base excision DNA repair protein-related protein
[Arabidopsis thaliana]
Length = 293
Score = 360 bits (923), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 175/288 (60%), Positives = 215/288 (74%), Gaps = 14/288 (4%)
Query: 1 MQKSRKRKQV------------EVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEF 48
M K++KRK++ + T +PYPT RPTAEECR +RD LL+LHGFPPEF
Sbjct: 1 MSKAQKRKRLNKYDGESKTPANKSTVDGGNPYPTLLRPTAEECRDVRDALLSLHGFPPEF 60
Query: 49 VKYRNQRLKHNMTRDKNSVPLDMNE--YDEGEEESVLDGLVKTVLSQNTTEANSLKAFAS 106
YR QRL+ D + ++ +E EEESVLDGLVK +LSQNTTE+NS +AFAS
Sbjct: 61 ANYRRQRLRSFSAVDDHDTQCNLKSETLNETEEESVLDGLVKILLSQNTTESNSQRAFAS 120
Query: 107 LKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSI 166
LK+TFP W+ VL AE K IENAIRCGGLAP KA CIKNIL L +G+LCLEYLRGLS+
Sbjct: 121 LKATFPKWDDVLNAESKSIENAIRCGGLAPKKAVCIKNILNRLQNERGRLCLEYLRGLSV 180
Query: 167 DEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHL 226
+E+K ELS F+G+GPKTV+CVLMF+LQ +DFPVDTHVFEI+KA+GWVP ADRNKTY+HL
Sbjct: 181 EEVKTELSHFKGVGPKTVSCVLMFNLQHNDFPVDTHVFEIAKALGWVPKTADRNKTYVHL 240
Query: 227 NQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNY 274
N++IP ELKFDLNCLLYTHGK+C NC K + K ++ + CPL+ +
Sbjct: 241 NRKIPDELKFDLNCLLYTHGKICSNCKKNVAKPKAKVASPDDCPLVGF 288
>gi|356513571|ref|XP_003525486.1| PREDICTED: endonuclease III-like [Glycine max]
Length = 284
Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 175/262 (66%), Positives = 204/262 (77%), Gaps = 13/262 (4%)
Query: 13 TETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMN 72
T+ +DP+P+H+RPT +EC +RD LLALHG PPE KYR +P
Sbjct: 29 TDNVKDPFPSHARPTPQECEAVRDTLLALHGIPPELAKYRK-------------LPPSDE 75
Query: 73 EYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCG 132
E VLDGLV+TVLSQNTTEANS KAFASLKS+FP+WE VL AE K +ENAIRCG
Sbjct: 76 PVQLQPPEPVLDGLVRTVLSQNTTEANSQKAFASLKSSFPSWEQVLWAESKDVENAIRCG 135
Query: 133 GLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHL 192
GLAPTKA+CIKN+L+CL E +G+LCLEYLR LS+DE+KAELS F+GIGPKTVACVLMF+L
Sbjct: 136 GLAPTKASCIKNVLRCLRERRGELCLEYLRDLSVDEVKAELSLFKGIGPKTVACVLMFNL 195
Query: 193 QQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
QQDDFPVDTH+FEI+K +GWVP A+RNK+YLHLNQR+P ELKFDLNCLLYTHGKLC C
Sbjct: 196 QQDDFPVDTHIFEIAKTMGWVPAVANRNKSYLHLNQRVPNELKFDLNCLLYTHGKLCHQC 255
Query: 253 IKKGGNRQRKESAGNLCPLLNY 274
K GN+Q K+ N CPLLNY
Sbjct: 256 SGKKGNKQGKKCDDNSCPLLNY 277
>gi|413944180|gb|AFW76829.1| ROS1 protein [Zea mays]
Length = 340
Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 155/279 (55%), Positives = 196/279 (70%), Gaps = 16/279 (5%)
Query: 1 MQKSRKRKQVEVTETRQDP----YPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRL 56
M + KRK + R DP YP+H+ P + +C +RD LLA HGFP EF +R RL
Sbjct: 65 MPRKPKRK-APASPARHDPSPEPYPSHASPCSAQCLVVRDALLAFHGFPEEFAAFRVLRL 123
Query: 57 KHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEH 116
L N +VLDGLV T+LSQNTT+A S +AFASLK+ FP+W+
Sbjct: 124 GG----------LSPNRDPRPSSPTVLDGLVTTLLSQNTTDAISRRAFASLKAAFPSWDQ 173
Query: 117 VLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRF 176
V+ E K +E+AIRCGGLA TKAA I+++L+ + E +GK+CLEYLR LS+DE+K ELSRF
Sbjct: 174 VVDEEGKRLEDAIRCGGLAATKAARIRSMLRDVRERRGKICLEYLRELSVDEVKKELSRF 233
Query: 177 RGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF 236
+GIGPKTVACVLMF+LQ+DDFPVDTHV I+KA+GWVP A R K Y+HLN +IP +LKF
Sbjct: 234 KGIGPKTVACVLMFYLQKDDFPVDTHVLRITKAMGWVPATASREKAYIHLNNKIPDDLKF 293
Query: 237 DLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
DLNCL THGKLC++C KK G+ +RK S+ + CPL YC
Sbjct: 294 DLNCLFVTHGKLCQSCTKKVGSDKRK-SSNSACPLAGYC 331
>gi|195645374|gb|ACG42155.1| ROS1 protein [Zea mays]
gi|219887377|gb|ACL54063.1| unknown [Zea mays]
Length = 276
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/279 (55%), Positives = 196/279 (70%), Gaps = 16/279 (5%)
Query: 1 MQKSRKRKQVEVTETRQDP----YPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRL 56
M + KRK + R DP YP+H+ P + +C +RD LLA HGFP EF +R RL
Sbjct: 1 MPRKPKRK-APASPARHDPSPEPYPSHASPCSAQCLVVRDALLAFHGFPEEFAAFRVLRL 59
Query: 57 KHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEH 116
L N +VLDGLV T+LSQNTT+A S +AFASLK+ FP+W+
Sbjct: 60 GG----------LSPNRDPRPSSPTVLDGLVTTLLSQNTTDAISRRAFASLKAAFPSWDQ 109
Query: 117 VLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRF 176
V+ E K +E+AIRCGGLA TKAA I+++L+ + E +GK+CLEYLR LS+DE+K ELSRF
Sbjct: 110 VVDEEGKRLEDAIRCGGLAATKAARIRSMLRDVRERRGKICLEYLRELSVDEVKKELSRF 169
Query: 177 RGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF 236
+GIGPKTVACVLMF+LQ+DDFPVDTHV I+KA+GWVP A R K Y+HLN +IP +LKF
Sbjct: 170 KGIGPKTVACVLMFYLQKDDFPVDTHVLRITKAMGWVPATASREKAYIHLNNKIPDDLKF 229
Query: 237 DLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
DLNCL THGKLC++C KK G+ +RK S+ + CPL YC
Sbjct: 230 DLNCLFVTHGKLCQSCTKKVGSDKRK-SSNSACPLAGYC 267
>gi|242095290|ref|XP_002438135.1| hypothetical protein SORBIDRAFT_10g008590 [Sorghum bicolor]
gi|241916358|gb|EER89502.1| hypothetical protein SORBIDRAFT_10g008590 [Sorghum bicolor]
Length = 279
Score = 306 bits (784), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 151/274 (55%), Positives = 193/274 (70%), Gaps = 15/274 (5%)
Query: 7 RKQVEVTETRQDP----YPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLK-HNMT 61
+++ + R DP YP+H+ P++ +C +RD LLA HGFP EF +R RL +
Sbjct: 6 KRKAPASPARHDPSPEPYPSHASPSSAQCLAVRDALLAFHGFPEEFAPFRLLRLGGRSPN 65
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD PL +VLDGLV T+LSQNTT+A S +AFASLK+ FP+W+ V+ E
Sbjct: 66 RDPRPQPL---------SPTVLDGLVITLLSQNTTDAISRRAFASLKAAFPSWDQVVDEE 116
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
K +E+AIRCGGLA TKAA I+ +L+ + E +GK+CLEYLR LS+DE+K ELSRF+GIGP
Sbjct: 117 GKRLEDAIRCGGLATTKAARIRAMLRDVRERRGKICLEYLRELSVDEVKKELSRFKGIGP 176
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KTVACVLMF+LQ+DDFPVDTHV I+KA+GWVP A R K Y+HLN +IP +LKFDLNCL
Sbjct: 177 KTVACVLMFYLQKDDFPVDTHVLRITKAMGWVPATASREKAYIHLNNKIPDDLKFDLNCL 236
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
THGKLC++C KK + + K S CPL YC
Sbjct: 237 FVTHGKLCQSCTKKVVSDKSKNSNAA-CPLAGYC 269
>gi|357124677|ref|XP_003564024.1| PREDICTED: endonuclease III-like [Brachypodium distachyon]
Length = 277
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 147/261 (56%), Positives = 189/261 (72%), Gaps = 10/261 (3%)
Query: 15 TRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
T +PY H P+ +C +RD LLA HGFP EF +R RL ++ + + PL
Sbjct: 19 TSLEPYRGHVSPSPAQCLAVRDALLAFHGFPDEFALFRLLRL--GLSPENEADPLT---- 72
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGL 134
E +VLDGLV T+LSQNTT+A S +AFASLK+ FP+W+ V+ E K +E+AIRCGGL
Sbjct: 73 ---ERPTVLDGLVTTLLSQNTTDAISRRAFASLKAAFPSWDQVVDEEGKGLEDAIRCGGL 129
Query: 135 APTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ 194
A TKAA I+ +L+ + E +G +CLEYLR LS+DE+K ELS+F+GIGPKT+ACVLMF+LQ+
Sbjct: 130 AATKAARIRAMLRDVRERRGAICLEYLRELSVDEVKRELSQFKGIGPKTMACVLMFYLQK 189
Query: 195 DDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIK 254
DDFPVDTHV I+KAIGWVP+ A R K Y+HLN++IP +LKFDLNCL THGKLC +C K
Sbjct: 190 DDFPVDTHVLRITKAIGWVPSTATREKAYIHLNKKIPDDLKFDLNCLFVTHGKLCPSCTK 249
Query: 255 KGGNRQRKESAGNLCPLLNYC 275
K G Q+ + A CPL +YC
Sbjct: 250 KLGA-QKLKVANATCPLASYC 269
>gi|326510563|dbj|BAJ87498.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 282
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 196/279 (70%), Gaps = 22/279 (7%)
Query: 5 RKRKQVEVTETRQD----PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNM 60
+ R+++ + +R+D PY H+ P+A +C +RD LLA HGFP EF +R RL
Sbjct: 10 KPRRKLPASPSRRDSPLEPYHGHAPPSAAQCLAVRDALLAFHGFPDEFAPFRLLRLG--- 66
Query: 61 TRDKNSVPLDMNEYDEGEEES----VLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEH 116
++ DEG++ + VLDGLV T+LSQNTT+A S +AFASLK+ FP+W+
Sbjct: 67 ----------LSPEDEGDQPAPRPTVLDGLVTTLLSQNTTDAISRRAFASLKAAFPSWDQ 116
Query: 117 VLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRF 176
V+ E +E+AIRCGGLA TKAA I+ +L+ + E +G +CLEYLR LS+DE+K ELS+F
Sbjct: 117 VVDEEGMGLEDAIRCGGLAATKAARIRAMLRGVREKRGAICLEYLRDLSVDEVKRELSQF 176
Query: 177 RGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF 236
+GIGPKTVACVLMF+LQ+DDFPVDTHV I+KA+GWVP A R K Y+H+N +IP +LKF
Sbjct: 177 KGIGPKTVACVLMFYLQKDDFPVDTHVLRITKALGWVPPTATREKAYIHMNNKIPDDLKF 236
Query: 237 DLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
DLNCL THGKLC++C K G Q+ + +CPL +YC
Sbjct: 237 DLNCLFVTHGKLCQSCTIKLGV-QKPKDVKAVCPLASYC 274
>gi|51535148|dbj|BAD37860.1| HhH-GPD base excision DNA repair protein-related-like [Oryza sativa
Japonica Group]
gi|51535812|dbj|BAD37897.1| HhH-GPD base excision DNA repair protein-related-like [Oryza sativa
Japonica Group]
gi|218197872|gb|EEC80299.1| hypothetical protein OsI_22321 [Oryza sativa Indica Group]
Length = 277
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 145/257 (56%), Positives = 188/257 (73%), Gaps = 4/257 (1%)
Query: 20 YPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEE 79
Y H P+ +C +RD LLA HGFP EF +R +R + + D + P + + D
Sbjct: 16 YHDHPSPSPAQCLAVRDALLAFHGFPDEFAPFRRRRRRLGL--DTSPDPEEDTDGDPSPP 73
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQ-KCIENAIRCGGLAPTK 138
+VLDGLV T+LSQNTT+A S +AFA+LK+ FPTW+ V+ E+ K +E+AIRCGGLA TK
Sbjct: 74 PTVLDGLVTTLLSQNTTDAISRRAFAALKAAFPTWDQVVDEEEGKRLEDAIRCGGLAATK 133
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
AA I+ +L+ + E +GK+CLEYLR LS+DE+K ELSRF+GIGPKTVACVLMF+LQ+DDFP
Sbjct: 134 AARIRAMLRGVRERRGKICLEYLRDLSVDEVKTELSRFKGIGPKTVACVLMFYLQKDDFP 193
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
VDTHV I+ AIGWVP A R + YLHLN +IP +LKFDLNCL THGKLC++C KK G
Sbjct: 194 VDTHVLRITNAIGWVPATASRERAYLHLNSKIPDDLKFDLNCLFVTHGKLCQSCSKKLGG 253
Query: 259 RQRKESAGNLCPLLNYC 275
Q+ + ++CPL +YC
Sbjct: 254 -QKTTGSNSMCPLASYC 269
>gi|125596638|gb|EAZ36418.1| hypothetical protein OsJ_20749 [Oryza sativa Japonica Group]
Length = 277
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/257 (56%), Positives = 187/257 (72%), Gaps = 4/257 (1%)
Query: 20 YPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEE 79
Y H P+ +C +RD LLA GFP EF +R +R + + D + P + + D
Sbjct: 16 YHDHPSPSPAQCLAVRDALLAFQGFPDEFAPFRRRRRRLGL--DTSPDPEEDTDGDPSPP 73
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQ-KCIENAIRCGGLAPTK 138
+VLDGLV T+LSQNTT+A S +AFA+LK+ FPTW+ V+ E+ K +E+AIRCGGLA TK
Sbjct: 74 PTVLDGLVTTLLSQNTTDAISRRAFAALKAAFPTWDQVVDEEEGKRLEDAIRCGGLAATK 133
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
AA I+ +L+ + E +GK+CLEYLR LS+DE+K ELSRF+GIGPKTVACVLMF+LQ+DDFP
Sbjct: 134 AARIRAMLRGVRERRGKICLEYLRDLSVDEVKTELSRFKGIGPKTVACVLMFYLQKDDFP 193
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
VDTHV I+ AIGWVP A R + YLHLN +IP +LKFDLNCL THGKLC++C KK G
Sbjct: 194 VDTHVLRITNAIGWVPATASRERAYLHLNSKIPDDLKFDLNCLFVTHGKLCQSCSKKLGG 253
Query: 259 RQRKESAGNLCPLLNYC 275
Q+ + ++CPL +YC
Sbjct: 254 -QKTTGSNSMCPLASYC 269
>gi|167997017|ref|XP_001751215.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697196|gb|EDQ83532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 272
Score = 276 bits (706), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 141/265 (53%), Positives = 176/265 (66%), Gaps = 22/265 (8%)
Query: 10 VEVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPL 69
VE+ T PYP +RP EEC +R+ L LHG E + R P
Sbjct: 11 VELAVTSGSPYPDFARPYPEECYEVRNRLSQLHGTEDE-----------HEDRTLTGCP- 58
Query: 70 DMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
+VLD LV T+LSQNTT+ NS KAFASLK FPTWE V AA+ K +E+AI
Sbjct: 59 -------SVRRTVLDSLVGTILSQNTTDNNSRKAFASLKQAFPTWEEVHAADPKKVEDAI 111
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
RCGGLA TKA I NIL + +G +CLEY+R +++D+IKAELSRF+G+GPKTVACVLM
Sbjct: 112 RCGGLAETKAKRIINILDTIFTERGSICLEYVRSMNVDQIKAELSRFKGVGPKTVACVLM 171
Query: 190 FHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC 249
FHL+Q++FPVDTHVF +SK +GWVP +ADR KTYLH+N R+P E+K+DL+CLL THGK C
Sbjct: 172 FHLEQNEFPVDTHVFRLSKMLGWVPASADREKTYLHMNSRVPDEVKYDLHCLLVTHGKRC 231
Query: 250 RNCIKKGGNRQRKESAGNLCPLLNY 274
C K G R + G CPL+N+
Sbjct: 232 PRCAK--GGRAQTAPDGP-CPLINW 253
>gi|449469507|ref|XP_004152461.1| PREDICTED: DEMETER-like protein 2-like [Cucumis sativus]
Length = 234
Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 129/193 (66%), Positives = 152/193 (78%), Gaps = 9/193 (4%)
Query: 18 DPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKH-------NMTRDKNSVPLD 70
DPYP HS PT++EC +RD+LL LHGFP EF+KYR +R + + R ++ ++
Sbjct: 42 DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKERERLSECCSVVDGVRAEHRDNVE 101
Query: 71 MNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIR 130
DE +ESVLDGLVKTVLSQNTTEANS +AFASLKS F WE VL+AE KCIE+AIR
Sbjct: 102 SEFVDE--KESVLDGLVKTVLSQNTTEANSERAFASLKSAFAAWEDVLSAESKCIEDAIR 159
Query: 131 CGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF 190
CGGLA TKA+CIKNIL L + +GKLCLE+LR LSIDEIKAELS F+GIGPKTVACVLMF
Sbjct: 160 CGGLASTKASCIKNILSSLSKRRGKLCLEFLRDLSIDEIKAELSTFKGIGPKTVACVLMF 219
Query: 191 HLQQDDFPVDTHV 203
+LQ+DDFPVDTHV
Sbjct: 220 NLQKDDFPVDTHV 232
>gi|4741200|emb|CAB41866.1| hypothetical protein [Arabidopsis thaliana]
Length = 334
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/270 (50%), Positives = 164/270 (60%), Gaps = 56/270 (20%)
Query: 18 DPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNE--YD 75
+PYPT RPTAEECR +RD LL+LHGFPPEF YR QRL+ D + ++ +
Sbjct: 30 NPYPTLLRPTAEECRDVRDALLSLHGFPPEFANYRRQRLRSFSAVDDHDTQCNLKSETLN 89
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E EEESVLDGLVK +LSQNTTE+NS +AFASLK+TFP W+ VL AE K IENAIRCGGLA
Sbjct: 90 ETEEESVLDGLVKILLSQNTTESNSQRAFASLKATFPKWDDVLNAESKSIENAIRCGGLA 149
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
P KA CIKNIL L +G+LCLEYLRGLS++E +
Sbjct: 150 PKKAVCIKNILNRLQNERGRLCLEYLRGLSVEE-------------------------HN 184
Query: 196 DFPVDTH--------------VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
DFPVDTH VFEI+KA+GWVP ADRNKTY+HLN++IP EL
Sbjct: 185 DFPVDTHSSRSLMRYKPRLKQVFEIAKALGWVPKTADRNKTYVHLNRKIPDELN------ 238
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPL 271
NC K + K ++ + CPL
Sbjct: 239 ---------NCKKNVAKPKAKVASPDDCPL 259
>gi|384248095|gb|EIE21580.1| DNA glycosylase, partial [Coccomyxa subellipsoidea C-169]
Length = 257
Score = 239 bits (610), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 130/268 (48%), Positives = 169/268 (63%), Gaps = 19/268 (7%)
Query: 12 VTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDM 71
V+ + + P+P RPTAEECR RD L LHG P + + D +
Sbjct: 1 VSISPKSPFPDFVRPTAEECRAARDALALLHGEP-----------RQHKPIDAGTAAAAA 49
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT---WEHVLAAEQKCIENA 128
+ +++VLD LV+T+LSQNTT+ S +AFASLK+ FP WE VL A +E A
Sbjct: 50 DSLHTHSQQTVLDSLVRTILSQNTTDVTSHRAFASLKAAFPGEEGWEDVLRAPPGKMEEA 109
Query: 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
IR GGLA KA IK IL LLE +GK+C+EYLR +S DEIKAEL F+G+G KTVACVL
Sbjct: 110 IRMGGLADIKAERIKAILATLLEERGKICMEYLREMSDDEIKAEL--FKGVGKKTVACVL 167
Query: 189 MFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL 248
MF L +++FPVDTHV+ ISK++GWVP A R+ Y HLN +P ++++DL+ L+ HGK
Sbjct: 168 MFCLAREEFPVDTHVWRISKSLGWVPAKATRDAAYEHLNLHVPADVRYDLHVLMVEHGKR 227
Query: 249 CRNCIKKGGNRQRKESAGNLCPLLNYCE 276
C C G + RKES G+ CPL N E
Sbjct: 228 CPRCASNG--KPRKESHGD-CPLRNLKE 252
>gi|356565037|ref|XP_003550751.1| PREDICTED: DEMETER-like protein 2-like [Glycine max]
Length = 172
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/147 (74%), Positives = 130/147 (88%)
Query: 128 AIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACV 187
+IRCGGLAPTKA+CIKN+L+CL E +G+LCLEYLR LS+DE+KAELS F+GIGPKTVACV
Sbjct: 19 SIRCGGLAPTKASCIKNVLRCLRERRGELCLEYLRDLSVDEVKAELSLFKGIGPKTVACV 78
Query: 188 LMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
LMF+LQQDDFPVDTH+FEI+K +GWVP+ AD+NK+Y+HLNQRIP ELKFDLN LLYT+GK
Sbjct: 79 LMFNLQQDDFPVDTHIFEIAKTMGWVPSVADKNKSYIHLNQRIPNELKFDLNSLLYTNGK 138
Query: 248 LCRNCIKKGGNRQRKESAGNLCPLLNY 274
LCR C K GN+Q K+ N CPLLNY
Sbjct: 139 LCRKCSGKKGNKQGKKCDDNSCPLLNY 165
>gi|255074589|ref|XP_002500969.1| predicted protein [Micromonas sp. RCC299]
gi|226516232|gb|ACO62227.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 216
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 152/230 (66%), Gaps = 16/230 (6%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P +RPT +EC RD L LH F ++ Q+ +++ G
Sbjct: 2 PFPNLARPTVDECWAARDALAKLHS--SFFQQFETQQAAGG-----DAI---------GP 45
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
++VLD LV T+LSQNTT+ NS +AFA LK FPTWE V A+ +E+AIRCGGLA K
Sbjct: 46 GKTVLDSLVGTILSQNTTDTNSHRAFAILKHRFPTWEQVRTAKPAKVEDAIRCGGLAEVK 105
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
+ I+ IL L E +G+ +EYLR +S D++KAELSRF+G+GPKTV+CVLMF L++ DFP
Sbjct: 106 VSRIQVILNTLKEERGECSMEYLRDMSDDDVKAELSRFKGVGPKTVSCVLMFCLKRPDFP 165
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL 248
VDTHV++I+K +GW+P A R Y HLN+R+P + KFDL+ LL HGK+
Sbjct: 166 VDTHVWKIAKDLGWIPKGAGREDAYEHLNRRVPDDCKFDLHVLLVEHGKV 215
>gi|413944179|gb|AFW76828.1| hypothetical protein ZEAMMB73_573219 [Zea mays]
Length = 264
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/206 (54%), Positives = 142/206 (68%), Gaps = 15/206 (7%)
Query: 1 MQKSRKRKQVEVTETRQDP----YPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRL 56
M + KRK + R DP YP+H+ P + +C +RD LLA HGFP EF +R RL
Sbjct: 65 MPRKPKRK-APASPARHDPSPEPYPSHASPCSAQCLVVRDALLAFHGFPEEFAAFRVLRL 123
Query: 57 KHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEH 116
L N +VLDGLV T+LSQNTT+A S +AFASLK+ FP+W+
Sbjct: 124 GG----------LSPNRDPRPSSPTVLDGLVTTLLSQNTTDAISRRAFASLKAAFPSWDQ 173
Query: 117 VLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRF 176
V+ E K +E+AIRCGGLA TKAA I+++L+ + E +GK+CLEYLR LS+DE+K ELSRF
Sbjct: 174 VVDEEGKRLEDAIRCGGLAATKAARIRSMLRDVRERRGKICLEYLRELSVDEVKKELSRF 233
Query: 177 RGIGPKTVACVLMFHLQQDDFPVDTH 202
+GIGPKTVACVLMF+LQ+DDFPVDTH
Sbjct: 234 KGIGPKTVACVLMFYLQKDDFPVDTH 259
>gi|303272857|ref|XP_003055790.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463764|gb|EEH61042.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 249
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/249 (46%), Positives = 153/249 (61%), Gaps = 19/249 (7%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHG-FPPEFVKYRNQRLKHNMTRDKN-----SVPLDMN 72
PYPT SRPT EEC RD L LH + +F++ R D+ + P
Sbjct: 4 PYPTLSRPTPEECWAARDALAHLHAEYYRDFLR-RTSLGAVGPGADRGVPALPATPAIGG 62
Query: 73 EYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF-PT---------WEHVLAAEQ 122
D VLD LV T+LSQNTT+ NS +AFA L +TF P+ WE + AA
Sbjct: 63 GGDANAAACVLDSLVGTILSQNTTDVNSARAFARLAATFAPSRDGRGRLNFWETIRAAPS 122
Query: 123 KCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPK 182
+E AI+CGGLA K + IK IL L+E +G C+EYLR +S D++K+ELSRF+G+GPK
Sbjct: 123 AEVEAAIKCGGLAEIKTSRIKVILNTLVEERGAPCMEYLRDMSDDDVKSELSRFKGVGPK 182
Query: 183 TVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLL 242
T+ACVL+F L++ FPVD HV++I+ A+GWVP +A R+ Y HLN+R+P K DL+ LL
Sbjct: 183 TIACVLVFCLRR--FPVDAHVWKIAMALGWVPKSASRDAAYEHLNRRVPDACKLDLHVLL 240
Query: 243 YTHGKLCRN 251
HGK +N
Sbjct: 241 VEHGKAYKN 249
>gi|307108459|gb|EFN56699.1| hypothetical protein CHLNCDRAFT_11543, partial [Chlorella
variabilis]
Length = 185
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/184 (54%), Positives = 127/184 (69%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPT 137
E SVLD +V+T+LSQNTT+A S +AF +LK FPTWE V A + +AIR GGLA
Sbjct: 2 ERRSVLDSVVRTLLSQNTTDATSGRAFDTLKERFPTWEGVRTAPLAAVADAIRVGGLADI 61
Query: 138 KAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDF 197
KA I+ IL L +G+ LE+LRGL KAELSRF+G+G KT ACVL+F L+ +F
Sbjct: 62 KAGRIQAILSTLAAERGECSLEHLRGLPAAAAKAELSRFKGVGKKTAACVLLFALELPEF 121
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGG 257
VDTHV+EISKA+GWVP A R++ Y H+N+ +P ELK+DL+ LL HGK C C K G
Sbjct: 122 AVDTHVWEISKALGWVPVNATRDQAYDHMNELVPDELKYDLHVLLVRHGKQCPACAKAGS 181
Query: 258 NRQR 261
+QR
Sbjct: 182 AKQR 185
>gi|223995635|ref|XP_002287491.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976607|gb|EED94934.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 251
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 143/258 (55%), Gaps = 19/258 (7%)
Query: 25 RPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLD 84
RP EEC L +H P+ + NQR + + N+ E V D
Sbjct: 1 RPAPEECLYATHVLAQIH---PDIIDTNNQRREALAQGKMQHLIKSENKKQSTLETPVTD 57
Query: 85 GLVKTVLSQNTTEANSLKAFASLKSTFPT-WEHVL-AAEQKCIENAIRCGGLAPTKAACI 142
++ T+LSQNTT+AN KAFA+LK FP W V + IE AIR GLA +AA I
Sbjct: 58 AIISTMLSQNTTDANQRKAFANLKKEFPGGWNDVANDVDTTRIETAIRVAGLAKIRAARI 117
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDE-IKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
+ +LK + + + EYL+ DE I+ ELSRF+G+GPKT++CVL+F L + DFPVDT
Sbjct: 118 QGMLKTVQQERNDANFEYLQFYDSDEEIQKELSRFKGMGPKTISCVLLFALGRPDFPVDT 177
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKG----- 256
HV I+K IGW+ + R Y +LN+R+P E K DL+CLL THGK C NC G
Sbjct: 178 HVLRITKQIGWIGASHSRESAYEYLNERVPNECKMDLHCLLVTHGKQCYNCAANGKPQFP 237
Query: 257 --GNRQRKESAGNLCPLL 272
G+ Q K CPL+
Sbjct: 238 PKGDEQWK------CPLI 249
>gi|323456431|gb|EGB12298.1| hypothetical protein AURANDRAFT_5189, partial [Aureococcus
anophagefferens]
Length = 202
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 127/201 (63%), Gaps = 5/201 (2%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPT 137
+ +S+LD LV+T+LSQNTT+ SL AF LK+ PTW VLAA E +RCGGLA
Sbjct: 2 QRKSILDSLVRTILSQNTTDKTSLVAFERLKAGLPTWSEVLAAPAGVAEELVRCGGLAEV 61
Query: 138 KAACIKNILK----CLLESKGKLCLEYLRGLSIDEI-KAELSRFRGIGPKTVACVLMFHL 192
K ++ IL + G+ CL++L G D + K LS F+G+GPKTV+CV+MF +
Sbjct: 62 KMERVRAILADPRVAGRGAAGEPCLQWLHGERDDAVVKRTLSSFKGVGPKTVSCVMMFTM 121
Query: 193 QQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
+ +FPVDTHV I+K W+P AA R K Y HLN+R+P E+KF L+ LL HGK C C
Sbjct: 122 GRAEFPVDTHVLHIAKMCKWLPEAATREKAYEHLNRRVPDEVKFALHVLLVEHGKCCTRC 181
Query: 253 IKKGGNRQRKESAGNLCPLLN 273
K G ++++ + CPLL+
Sbjct: 182 AKNGKLQKKECALAGPCPLLD 202
>gi|413944181|gb|AFW76830.1| hypothetical protein ZEAMMB73_573219 [Zea mays]
Length = 252
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/188 (51%), Positives = 124/188 (65%), Gaps = 15/188 (7%)
Query: 1 MQKSRKRKQVEVTETRQDP----YPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRL 56
M + KRK + R DP YP+H+ P + +C +RD LLA HGFP EF +R RL
Sbjct: 65 MPRKPKRK-APASPARHDPSPEPYPSHASPCSAQCLVVRDALLAFHGFPEEFAAFRVLRL 123
Query: 57 KHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEH 116
L N +VLDGLV T+LSQNTT+A S +AFASLK+ FP+W+
Sbjct: 124 GG----------LSPNRDPRPSSPTVLDGLVTTLLSQNTTDAISRRAFASLKAAFPSWDQ 173
Query: 117 VLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRF 176
V+ E K +E+AIRCGGLA TKAA I+++L+ + E +GK+CLEYLR LS+DE+K ELSRF
Sbjct: 174 VVDEEGKRLEDAIRCGGLAATKAARIRSMLRDVRERRGKICLEYLRELSVDEVKKELSRF 233
Query: 177 RGIGPKTV 184
+GIGPKTV
Sbjct: 234 KGIGPKTV 241
>gi|388852390|emb|CCF54005.1| uncharacterized protein [Ustilago hordei]
Length = 635
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 139/240 (57%), Gaps = 11/240 (4%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
P+P H PTAEE + L HG+ R+ + K + P +++ G
Sbjct: 104 PFPDHPLPTAEEAENVAWILGDFHGY------KRDSEGGRGLP--KYTTPKGEDKWGGCG 155
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT--WEHVLAAEQKCIENAIRCGGLA 135
+ SVLD +V+TVLS NT+ NS A S+ F WE + +A + + AIRCGGLA
Sbjct: 156 DVPSVLDAVVRTVLSCNTSSRNSSAAHRSMTEHFGVQNWEAIHSAPESELVEAIRCGGLA 215
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA IK IL +E GKL L++L + DEI EL RF G+GPK +CVL F + +
Sbjct: 216 NNKARTIKGILAQTMERHGKLSLDHLHNATDDEIMQELVRFNGVGPKVASCVLAFCIGRQ 275
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
VDTHVF + KA+ WVP A+R++TY HL++R+P +LK+ L+ LL HGK+CR+C K
Sbjct: 276 SMAVDTHVFRLCKALRWVPEKANRDQTYYHLHERVPGDLKYALHVLLIKHGKMCRHCSAK 335
>gi|397619559|gb|EJK65312.1| hypothetical protein THAOC_13838, partial [Thalassiosira oceanica]
Length = 527
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 136/234 (58%), Gaps = 13/234 (5%)
Query: 24 SRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVL 83
+RPT +ECR L +H PE V+ +R R++N+ + + +
Sbjct: 257 ARPTPDECRLAVQGLGRIH---PEVVQENLERRLAFAARNRNA---------DDKSTPIT 304
Query: 84 DGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKC-IENAIRCGGLAPTKAACI 142
D ++ T+LSQNTT AN +A+A+LK FP WE V + + AIRC GL+ T+ +
Sbjct: 305 DSIINTMLSQNTTAANQQRAYANLKREFPDWEQVAESSNASRVAAAIRCAGLSKTRTERM 364
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ +L+ + E +GK E+LR S DEIK +L + +G+GPKTV+CVL+F L + +FPVDTH
Sbjct: 365 QLMLQKVKEERGKANFEFLRDCSSDEIKKQLLQHKGMGPKTVSCVLLFALLKPEFPVDTH 424
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKG 256
V ISK WVP + R Y +LN IP E K DL+CLL HGK C C +G
Sbjct: 425 VLRISKQNRWVPASFSRESAYSYLNGVIPDEFKLDLHCLLVAHGKHCNQCAARG 478
>gi|71003520|ref|XP_756426.1| hypothetical protein UM00279.1 [Ustilago maydis 521]
gi|46096031|gb|EAK81264.1| hypothetical protein UM00279.1 [Ustilago maydis 521]
Length = 1875
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 141/253 (55%), Gaps = 11/253 (4%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
P+P H PTAEE + L HG+ E Q L K + P + + G
Sbjct: 1346 PFPDHPLPTAEEADRVAWILGEFHGYKRE--SEGGQGLP------KYTTPKGDDRWGGCG 1397
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT--WEHVLAAEQKCIENAIRCGGLA 135
+ SVLD +V+TVLS NT+ NS A SL F W + AA + + AIRCGGLA
Sbjct: 1398 DVASVLDAVVRTVLSCNTSSRNSAAAHRSLTEHFGVRNWHAIHAAPESELVEAIRCGGLA 1457
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA IK IL L+ GKL L++L + DEI EL F G+GPK +CVL F + +
Sbjct: 1458 NNKARTIKGILNQTLQRHGKLSLDHLHDATDDEIMQELVSFNGVGPKVASCVLAFCIGRQ 1517
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
VDTHVF + KA+ WVP A+R++TY HL++R+P LK+ L+ LL HGK+C NC K
Sbjct: 1518 SMAVDTHVFRLCKALAWVPEKANRDQTYYHLHERVPGPLKYALHVLLIKHGKMCANCSAK 1577
Query: 256 GGNRQRKESAGNL 268
G ++E+ ++
Sbjct: 1578 GFATLKEETGSSV 1590
>gi|323507809|emb|CBQ67680.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 638
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 133/241 (55%), Gaps = 11/241 (4%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
P+P H PT E + L HG+ E R K + P + + G
Sbjct: 111 PFPDHPLPTPTEAERVAWILGEFHGYKRESDGGRGL--------PKYTPPKGDDSWGGCG 162
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF--PTWEHVLAAEQKCIENAIRCGGLA 135
SVLD +V+TVLS NT+ NS A S+ F W + AA + + +AIRCGGLA
Sbjct: 163 NVPSVLDAVVRTVLSCNTSNRNSAAAHRSMTEHFGRANWAAIHAAPESELVDAIRCGGLA 222
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA IK IL LE GKL L++L S D+I +L F G+GPK +CVL F + +D
Sbjct: 223 NNKARTIKGILAQTLEKHGKLSLDHLHDASDDDIMQQLVAFNGVGPKVASCVLAFCIGRD 282
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
VDTHVF + KA+GWVP A+R++TY HL++R+P LK+ L+ LL HGK C NC K
Sbjct: 283 SMAVDTHVFRLCKALGWVPDKANRDQTYYHLHERVPGHLKYALHVLLIAHGKRCANCSAK 342
Query: 256 G 256
G
Sbjct: 343 G 343
>gi|443896168|dbj|GAC73512.1| nitrogen permease regulator NLRG/NPR2, partial [Pseudozyma
antarctica T-34]
Length = 979
Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats.
Identities = 101/241 (41%), Positives = 134/241 (55%), Gaps = 11/241 (4%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
P+P H PTA E + L HG+ E R + + P ++Y G
Sbjct: 445 PFPDHPLPTAAEAEQVAWILGDFHGYKRESEGGRGL--------PRYTPPQGDDKYGGCG 496
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF--PTWEHVLAAEQKCIENAIRCGGLA 135
+ SVLD ++TVLS NT+ NS A SL F WE + AA + + AIRCGGLA
Sbjct: 497 DVPSVLDATIRTVLSCNTSNRNSAAAHRSLTDHFGRRNWEAIHAAPESELVEAIRCGGLA 556
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA IK IL +E GKL L++L + DEI EL F G+GPK +CVL F + +
Sbjct: 557 NNKARTIKGILSQTMEKHGKLSLDHLHTATDDEIMQELVSFNGVGPKVASCVLAFCIGRQ 616
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
VDTHVF + K++GWVP A+R++TY HL++R+P LK+ L+ LL HGK C NC K
Sbjct: 617 SMAVDTHVFRLCKSLGWVPEKANRDQTYYHLHERVPGHLKYPLHVLLIQHGKRCANCSAK 676
Query: 256 G 256
G
Sbjct: 677 G 677
>gi|297605479|ref|NP_001057253.2| Os06g0237900 [Oryza sativa Japonica Group]
gi|255676875|dbj|BAF19167.2| Os06g0237900 [Oryza sativa Japonica Group]
Length = 221
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/187 (49%), Positives = 127/187 (67%), Gaps = 6/187 (3%)
Query: 20 YPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEE 79
Y H P+ +C +RD LLA HGFP EF +R +R + + D + P + + D
Sbjct: 16 YHDHPSPSPAQCLAVRDALLAFHGFPDEFAPFRRRRRRLGL--DTSPDPEEDTDGDPSPP 73
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQ-KCIENAIRCGGLAPTK 138
+VLDGLV T+LSQNTT+A S +AFA+LK+ FPTW+ V+ E+ K +E+AIRCGGLA TK
Sbjct: 74 PTVLDGLVTTLLSQNTTDAISRRAFAALKAAFPTWDQVVDEEEGKRLEDAIRCGGLAATK 133
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDF- 197
AA I+ +L+ + E +GK+CLEYLR LS+DE+K ELSRF+GIGPKTV+ + +F +F
Sbjct: 134 AARIRAMLRGVRERRGKICLEYLRDLSVDEVKTELSRFKGIGPKTVSSISLFSCFFSEFG 193
Query: 198 --PVDTH 202
PV H
Sbjct: 194 FRPVGFH 200
>gi|326436846|gb|EGD82416.1| hypothetical protein PTSG_03059 [Salpingoeca sp. ATCC 50818]
Length = 495
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 149/302 (49%), Gaps = 75/302 (24%)
Query: 15 TRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
T+ P+ PT EC+ + D L+ L+G P +
Sbjct: 196 TQSTPFLGFPHPTPAECKHMHDALVQLYG------------------------PRTRPPH 231
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGL 134
++LD LV+T+LSQNTT++NS AF +LK TFPTWE V +A+ +E AIR GL
Sbjct: 232 HRAANTNLLDSLVRTILSQNTTDSNSSAAFRNLKQTFPTWEDVHSADVGALEAAIRSAGL 291
Query: 135 APTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ 194
A TK+ IK+IL L GKL LEYLR L +K +L+RF+G+GPKT++C+L+F +Q+
Sbjct: 292 AQTKSRRIKSILDTLHAEHGKLSLEYLRELPSHTVKEQLARFKGVGPKTISCLLLFAMQR 351
Query: 195 DDFPVDTHVFEISKAIGWVPTAAD------------------------------------ 218
D VDTHVF ++K GWVP+ +
Sbjct: 352 PDMAVDTHVFRLAKRAGWVPSDVEVRKHNRVVEQEQSSCSVASKNSRKRAKRISNDTQNC 411
Query: 219 ------------RNKTYLHLNQRIPKELKFDLNCLLYTHG-KLCRN--CIKKGGNRQRKE 263
R TY HLN +P +LK+ L+ LL HG ++C++ C+ K R+ K+
Sbjct: 412 SASSLHSWPGVTRETTYEHLNATVPDDLKYALHLLLIHHGRRVCKSQGCLAKSRRRRPKQ 471
Query: 264 SA 265
A
Sbjct: 472 EA 473
>gi|346321129|gb|EGX90729.1| HhH-GPD family base excision DNA repair protein [Cordyceps
militaris CM01]
Length = 330
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 140/273 (51%), Gaps = 34/273 (12%)
Query: 5 RKRKQVEVTETRQDPYPTHSRPTAEECRGIRDELLALHGF---PPEFVKYRNQRLKHNMT 61
RK KQ + T P+P +RPT +C + L+ALHG P + V R
Sbjct: 78 RKGKQTQHMTT--TPFPDFARPTPADCALAHEILVALHGARARPSQVVASRT-------- 127
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF---PTWEHVL 118
G+ SVLD LV+T+LSQNT+ ANS +A S+ + + WE +
Sbjct: 128 -----------TAGCGDSPSVLDALVRTILSQNTSSANSTRAKRSMDAAYGRSDAWEAIA 176
Query: 119 AAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRG 178
A Q ++ AIRCGGLA TK+ I N+L + G L++L S E EL F G
Sbjct: 177 AGGQPQLQAAIRCGGLAATKSRVIVNLLAAVHSKYGMYSLDHLFHASDTEAMEELLAFPG 236
Query: 179 IGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDL 238
+GPKT +CVL+F LQ+ F VDTHV+ I+ +GW P A R + HL+ IP LK+ L
Sbjct: 237 VGPKTASCVLLFCLQRPSFAVDTHVYRIAGILGWRPPEATREQAQAHLDASIPDALKYPL 296
Query: 239 NCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPL 271
+ LL HG+ CR C K +AG C L
Sbjct: 297 HVLLIAHGRTCRAC-------GAKAAAGESCKL 322
>gi|378733828|gb|EHY60287.1| endonuclease III [Exophiala dermatitidis NIH/UT8656]
Length = 442
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 139/248 (56%), Gaps = 19/248 (7%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
Q P+P PT EC+ L++LHG + R + + + TR
Sbjct: 174 QSPFPDFPHPTPAECKLAHRILISLHG-----PRTRPKEVIASTTR-----------AGC 217
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF---PTWEHVLAAEQKCIENAIRCGG 133
G+ SVLD LV+T+LSQNT++ NS +A ++ + WE + A Q ++ AI+ GG
Sbjct: 218 GDSPSVLDALVRTILSQNTSDVNSTRAKLNMDKVYGGSDKWEAIAAGGQAKLQEAIKSGG 277
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L+ K+ I +IL + E G L++L S ++ E+ F+G+GPKT +CVL+F LQ
Sbjct: 278 LSAVKSKVIISILNQVYEKYGVYSLDHLHSASSEDAMREMLSFQGVGPKTASCVLLFCLQ 337
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCI 253
++ F VDTHV+ I+ +GW P +A R++TY HL+ +IP E K+ L+ LL THGK C C
Sbjct: 338 RESFAVDTHVWRITGLLGWRPKSASRDETYAHLDSKIPDEDKYGLHILLVTHGKRCDECK 397
Query: 254 KKGGNRQR 261
G N R
Sbjct: 398 AGGKNLGR 405
>gi|310800884|gb|EFQ35777.1| base excision DNA repair protein [Glomerella graminicola M1.001]
Length = 389
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 139/244 (56%), Gaps = 20/244 (8%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
+ P+P + PT +ECR L LHG + R +K + TR
Sbjct: 134 KSPFPDFAHPTPDECRLAHRILAELHG-----KRERPAEVKASATR-----------AGC 177
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF---PTWEHVLAAEQKCIENAIRCGG 133
G+ SVLD LV+T+LSQNT++ NS +A S+ + + WE ++ ++ AI+CGG
Sbjct: 178 GDSPSVLDALVRTILSQNTSDTNSTRAKRSMDAVYGGSDEWEKIVEGGVHKLQEAIKCGG 237
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L+ K+ I IL + E G L++L + +E EL F+G+GPKT +CVL+F LQ
Sbjct: 238 LSQVKSKVIIGILNQVKEKYGSYTLDHLFNATNEEAMQELISFQGVGPKTASCVLLFCLQ 297
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCI 253
++ F VDTHV+ I+ +GW P +A R++T+ HL+ RIP E K+ L+ LL HGK+C C
Sbjct: 298 RESFAVDTHVWRITGLLGWRPKSASRDETHAHLDVRIPDEDKYGLHILLVKHGKVCDEC- 356
Query: 254 KKGG 257
K GG
Sbjct: 357 KAGG 360
>gi|380494482|emb|CCF33119.1| base excision DNA repair protein [Colletotrichum higginsianum]
Length = 385
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 138/244 (56%), Gaps = 20/244 (8%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
+ P+P PT +ECR L LHG + R +K + TR
Sbjct: 130 KSPFPDFPHPTPDECRLAHRILAGLHG-----KRERPAEVKASSTRAGC----------- 173
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF---PTWEHVLAAEQKCIENAIRCGG 133
G+ SVLD LV+T+LSQNT++ NS +A S+ + + WE ++ ++ AI+CGG
Sbjct: 174 GDSPSVLDALVRTILSQNTSDTNSTRAKRSMDAVYGGSDEWERIVDGGVSKLQEAIKCGG 233
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L+ K+ I IL + E G L++L S ++ EL F+G+GPKT +CVL+F LQ
Sbjct: 234 LSQVKSKVIIGILNQVREKYGSYSLDHLFNASNEDAMQELISFQGVGPKTASCVLLFCLQ 293
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCI 253
++ F VDTHV+ I+ +GW P +A R++T+ HL+ RIP E K+ L+ LL HGK+C C
Sbjct: 294 RESFAVDTHVWRITGLMGWRPRSASRDETHAHLDVRIPDEDKYGLHILLVKHGKVCAEC- 352
Query: 254 KKGG 257
K GG
Sbjct: 353 KAGG 356
>gi|389622827|ref|XP_003709067.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
70-15]
gi|351648596|gb|EHA56455.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
70-15]
Length = 382
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 141/267 (52%), Gaps = 26/267 (9%)
Query: 4 SRKRKQVEVTE-TRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTR 62
SRK KQ + ++ P+P PT EC+ L LHG R
Sbjct: 102 SRKLKQYYGGDASKLGPFPNFPHPTPAECKRAHRILAKLHG-----------------AR 144
Query: 63 DKNSVPLDMNEYDE---GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF----PTWE 115
+ +VPL G+ SVLD LV+T+LSQNT+++NS +A S+ + W
Sbjct: 145 KRPTVPLTAGPAGRAGCGDAPSVLDALVRTILSQNTSDSNSARAKRSMDRAYGGRHDNWP 204
Query: 116 HVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSR 175
V+A +E AIRCGGL+ K+ I +IL+ + G L++LR S +E E+
Sbjct: 205 AVVAGGVGKLEEAIRCGGLSVVKSRVIMSILETCAQRYGSYSLDHLREASDEEAMREMLA 264
Query: 176 FRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELK 235
F+G+GPKT +CVL+F L ++ F VDTHV ++ +GW P R + +LHL+ RIP E K
Sbjct: 265 FKGVGPKTASCVLLFCLGRESFAVDTHVHRLTGMLGWRPAGTSREEAHLHLDARIPDEDK 324
Query: 236 FDLNCLLYTHGKLCRNCIKKGGNRQRK 262
+ L+ LL THGK C C K GG K
Sbjct: 325 YGLHVLLITHGKRCAEC-KAGGKSSGK 350
>gi|358060340|dbj|GAA93745.1| hypothetical protein E5Q_00391 [Mixia osmundae IAM 14324]
Length = 1544
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 141/257 (54%), Gaps = 18/257 (7%)
Query: 2 QKSRKRKQVEVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMT 61
Q ++K +Q+E Q PYP +RP+ +C + + L +H P VK + R +
Sbjct: 546 QLAKKLRQLETYN--QTPYPDFARPSEADCHSVLEALCTVHRRPERPVKLKQAR--PDGP 601
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEH--VLA 119
SVP LD L++T+LSQNT+ ANS +A L F ++ + A
Sbjct: 602 AGCGSVP------------DPLDALIRTILSQNTSSANSTRAMKGLIERFGYGDYAAIQA 649
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
A + + +I GGLA KA IK +L + E +GKL L YL + ++ EL F G+
Sbjct: 650 ASVEDVTESIATGGLANVKAKVIKKVLDQVQEKRGKLDLTYLHDMEDIDVMRELISFDGV 709
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT +CVL+F L ++ F VDTHVF ++KA+ WVP ADR T+ HL+ +IP LK+ L+
Sbjct: 710 GFKTASCVLLFCLGRESFAVDTHVFRLTKALNWVPAKADRETTFQHLDVKIPGPLKYPLH 769
Query: 240 CLLYTHGKLCRNCIKKG 256
LL HG+ C+NC G
Sbjct: 770 SLLIHHGRSCKNCSANG 786
>gi|400601349|gb|EJP68992.1| base excision DNA repair protein [Beauveria bassiana ARSEF 2860]
Length = 361
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 140/274 (51%), Gaps = 36/274 (13%)
Query: 5 RKRKQVE-VTETRQDPYPTHSRPTAEECRGIRDELLALHGF---PPEFVKYRNQRLKHNM 60
RK KQ +T T P+P +RPT +C D L++LHG P + V R
Sbjct: 112 RKSKQTRHITST---PFPDFARPTPADCTLAHDILVSLHGARARPAQVVASRT------- 161
Query: 61 TRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF---PTWEHV 117
G+ SVLD LV+T+LSQNT+ ANS +A S+ + + WE +
Sbjct: 162 ------------AAGCGDSPSVLDALVRTILSQNTSSANSTRAKQSMDTVYGGSDQWEAI 209
Query: 118 LAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFR 177
A Q ++ AI+ GGLA TK+ I +IL + G L++L E EL F
Sbjct: 210 AAGGQAKLQRAIQSGGLAATKSRVIIDILAAVRAKYGVYSLDHLFTAGDAEAMEELLAFP 269
Query: 178 GIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFD 237
G+GPKT +C+L+F LQ+ F VDTHV+ ++ +GW P A R + HL+ ++P ELK+
Sbjct: 270 GVGPKTASCILLFCLQRPSFAVDTHVYRLTGVLGWRPYEATREQAQAHLDAKVPDELKYP 329
Query: 238 LNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPL 271
L+ LL HG+ C C K +AG C L
Sbjct: 330 LHVLLIAHGRTCSAC-------NAKAAAGQTCKL 356
>gi|322700299|gb|EFY92055.1| base excision DNA repair protein [Metarhizium acridum CQMa 102]
Length = 364
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 133/251 (52%), Gaps = 21/251 (8%)
Query: 15 TRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
++Q PYP +RPTAEECR L HG +R++ V N
Sbjct: 99 SKQSPYPDFARPTAEECRAAHKILAKCHG----------ERIR------PEEVVAPTNAA 142
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF---PTWEHVLAAEQKCIENAIRC 131
G+ SVLD LV+T+LSQNT+ NS +A S+ + WE + Q +E +I+
Sbjct: 143 GCGDSPSVLDALVRTILSQNTSNKNSTRAKLSMDEEYGGSDKWEEIANGGQARLEKSIQT 202
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GGLA TK+ I IL+ G L++L S ++ E+ F+G+GPKT +CVL+F
Sbjct: 203 GGLAATKSKVIIGILQQTKAKYGVYSLDHLFEASDEDAMKEMISFQGVGPKTASCVLLFC 262
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
LQ+ F VDTHV I+ +GW P AA R +T HL+ +P E K+ L+ L THG+ C
Sbjct: 263 LQRPSFAVDTHVHRITGLLGWRPAAAGREETQAHLDAVVPDEEKYPLHVLFVTHGRQCEE 322
Query: 252 CIKKGGNRQRK 262
C K G R K
Sbjct: 323 C--KAGGRNAK 331
>gi|322708253|gb|EFY99830.1| base excision DNA repair protein [Metarhizium anisopliae ARSEF 23]
Length = 364
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 131/247 (53%), Gaps = 19/247 (7%)
Query: 15 TRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
+++ PYP +RPTAEECR L HG +RL+ V N
Sbjct: 99 SKKSPYPDFARPTAEECRAAHKILAKRHG----------ERLR------PEEVVAPTNAA 142
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF---PTWEHVLAAEQKCIENAIRC 131
G+ SVLD LV+T+LSQNT+ NS +A S+ + WE + Q +E +I+
Sbjct: 143 GCGDSPSVLDALVRTILSQNTSNKNSTRAKLSMDEEYGGSDKWEEIANGGQARLEKSIQT 202
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GGLA TK+ I IL+ G L++L S ++ E+ F+G+GPKT +CVL+F
Sbjct: 203 GGLAATKSKVIIGILQQTKAKYGLYSLDHLFEASDEDAMKEMISFQGVGPKTASCVLLFC 262
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
LQ+ F VDTHV I+ +GW P AA R +T HL+ +P E K+ L+ L THG+ C
Sbjct: 263 LQRPSFAVDTHVHRITGLLGWRPAAAGREETQAHLDAVVPDEEKYPLHVLFVTHGRQCEE 322
Query: 252 CIKKGGN 258
C G N
Sbjct: 323 CKAGGSN 329
>gi|440476191|gb|ELQ44813.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
Y34]
gi|440486908|gb|ELQ66733.1| HhH-GPD family base excision DNA repair protein [Magnaporthe oryzae
P131]
Length = 375
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/267 (37%), Positives = 140/267 (52%), Gaps = 26/267 (9%)
Query: 4 SRKRKQVEVTE-TRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTR 62
SRK KQ + ++ P+P PT EC+ L LHG R
Sbjct: 95 SRKLKQYYGGDASKLGPFPNFPHPTPAECKRAHRILAKLHG-----------------AR 137
Query: 63 DKNSVPLDMNEYDE---GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF----PTWE 115
+ +V L G+ SVLD LV+T+LSQNT+++NS +A S+ + W
Sbjct: 138 KRPTVSLTAGPAGRAGCGDAPSVLDALVRTILSQNTSDSNSARAKRSMDRAYGGRHDNWP 197
Query: 116 HVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSR 175
V+A +E AIRCGGL+ K+ I +IL+ + G L++LR S +E E+
Sbjct: 198 AVVAGGVGKLEEAIRCGGLSVVKSRVIMSILETCAQRYGSYSLDHLREASDEEAMREMLA 257
Query: 176 FRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELK 235
F+G+GPKT +CVL+F L ++ F VDTHV ++ +GW P R + +LHL+ RIP E K
Sbjct: 258 FKGVGPKTASCVLLFCLGRESFAVDTHVHRLTGMLGWRPAGTSREEAHLHLDARIPDEDK 317
Query: 236 FDLNCLLYTHGKLCRNCIKKGGNRQRK 262
+ L+ LL THGK C C K GG K
Sbjct: 318 YGLHVLLITHGKRCAEC-KAGGKSSGK 343
>gi|170101314|ref|XP_001881874.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643229|gb|EDR07482.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 308
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 154/286 (53%), Gaps = 37/286 (12%)
Query: 2 QKSRKRKQVEVTETRQD--PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHN 59
Q S+ K++++ + D P+ T + PT E R + + LL H P E ++ R
Sbjct: 33 QSSKVSKKLKLHSSFVDTSPFQTFAHPTPAEAREVHELLLTAH-RPHEPIRRR------- 84
Query: 60 MTRDKNSVPLDMNEYDE--GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWE 115
PL+ N G +V++ L+ T+LSQNT+ N +A SL + F +
Sbjct: 85 --------PLNSNNSAGTCGNVPNVIEALIGTILSQNTSGQNCHRAKTSLDAVFGRNNFV 136
Query: 116 HVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYL-------RGLSIDE 168
+ A ++ + +AIR GGLA KAA I+N+L + G+ L++L R +S DE
Sbjct: 137 AIAQAPRERLVDAIRSGGLANKKAATIQNLLHSIRGKHGEYSLQHLAAAESSGRRMSDDE 196
Query: 169 IKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQ 228
I EL + G+GPKT +CVL+F L ++ F VDTHVF +SK +GWVP +DR HL+
Sbjct: 197 IMKELISYDGVGPKTASCVLLFCLGRNSFAVDTHVFRLSKLLGWVPQKSDRVLAQAHLDI 256
Query: 229 RIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNY 274
R+P ELK+DL+ L+ HG+LC+ C K G +G C L Y
Sbjct: 257 RVPDELKYDLHVLMIQHGRLCKGCKKTG--------SGQACILKTY 294
>gi|402075883|gb|EJT71306.1| hypothetical protein GGTG_10565 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 393
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 136/273 (49%), Gaps = 45/273 (16%)
Query: 15 TRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
T P+P + PTA ECR L +LHG + T S P
Sbjct: 119 TPASPFPDFAHPTAAECRLAHSILASLHG------------PRERPTNPPASGP--AGRA 164
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF----PTWEHVLAAEQKCIENAIR 130
G+ +VLD LV+T+LSQNTT+ANS +A ++ + + W V A +E+AIR
Sbjct: 165 GCGDAATVLDALVRTILSQNTTDANSARAKRAMDAAYGGRHDNWAAVAAGGTARLEDAIR 224
Query: 131 CGGLAPTKAACIKNILKCLLESKGK--------------------------LCLEYLRGL 164
CGGLA K+ I +IL+ L E LE++R L
Sbjct: 225 CGGLAAAKSRVIISILERLRERHASSSSLSSLSSSPAVAKDDDEKNQNDSIYSLEHIRDL 284
Query: 165 SIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYL 224
+ EL FRG+GPKT +CVL+F L +D F VDTHV I+ +GW P A R++T+L
Sbjct: 285 PTADAMRELLSFRGVGPKTASCVLLFCLGRDSFAVDTHVHRIAGLLGWRPPRATRDETHL 344
Query: 225 HLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGG 257
HL+ R+P K+ L+ L+ THGK C C K GG
Sbjct: 345 HLDARVPDTDKYGLHVLMVTHGKRCAEC-KAGG 376
>gi|296420260|ref|XP_002839693.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635887|emb|CAZ83884.1| unnamed protein product [Tuber melanosporum]
Length = 441
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 149/303 (49%), Gaps = 53/303 (17%)
Query: 3 KSRKRKQVEVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTR 62
K+R RK T P+P H PT + +E++AL + H
Sbjct: 83 KTRNRKLAYALGTT--PFPNHKLPTPHDI----EEVVAL------------LTVAHGPAI 124
Query: 63 DKNSVPLDMNEYDE-GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--------- 112
+ VP N GE SVLD +++T+LS NT +NS KAFA L F
Sbjct: 125 RPDKVPKPDNSVSGCGEVPSVLDAVIRTLLSANTHNSNSSKAFAGLIDRFGLVPECSEVE 184
Query: 113 -----------TWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLL----------E 151
W+ V A+ + N+IR GG+APTK IKN+L +
Sbjct: 185 GVKGRSDAGTVDWDAVRRADLDDVVNSIRKGGMAPTKGRRIKNLLDAKRKEPLSNPDKDD 244
Query: 152 SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIG 211
G L L+Y+ LS DE + +L+ F G+GPKT +CV++F L++D F VDTHVF +SK +
Sbjct: 245 EDGDLSLDYIHKLSDDEARQKLTSFDGVGPKTASCVMLFCLRRDSFAVDTHVFRLSKFLK 304
Query: 212 WVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIK----KGGNRQRKESAGN 267
WVP A R TY HL+ R+P E K+ L+ LL HG+ C+ C KG R E++ +
Sbjct: 305 WVPAKATRETTYAHLDVRVPAEHKYALHNLLIRHGRTCKECKAGPKHKGKKRVSSETSLD 364
Query: 268 LCP 270
L P
Sbjct: 365 LSP 367
>gi|358381882|gb|EHK19556.1| hypothetical protein TRIVIDRAFT_24735, partial [Trichoderma virens
Gv29-8]
Length = 274
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 137/272 (50%), Gaps = 26/272 (9%)
Query: 3 KSRKRKQVEVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTR 62
++RK K ++ P+PT PT +EC L +LHG R
Sbjct: 11 QARKLKSF-TAHSQASPFPTFLHPTPQECALAHSILASLHG---------------ERKR 54
Query: 63 DKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF---PTWEHVLA 119
++ G+ V D LV+T+LSQNT++ NS +A ++ T+ WE ++
Sbjct: 55 QAEAIVAPSTRAGCGDAMFVTDALVRTILSQNTSDRNSSRAKLAMDETYGRSDNWEAIVD 114
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
+ ++ IR GGL+ K+ I NIL+ G L++L S D EL F+G+
Sbjct: 115 GGTEKLQRTIRSGGLSVVKSKVIINILRQTKAKYGSYSLDHLLHASNDSAMRELLSFQGV 174
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
GPKT +CVL+F LQ+D FPVDTHV+ I+ +GW P A R + HL R+P E K+ L+
Sbjct: 175 GPKTASCVLLFCLQRDSFPVDTHVYRITGLLGWRPETASREEAQAHLEARVPDEDKYGLH 234
Query: 240 CLLYTHGKLCRNCIKKGGNRQRKESAGNLCPL 271
LL THGK C C + G + K CPL
Sbjct: 235 ILLVTHGKTCNEC-RAGSTKSGK------CPL 259
>gi|358400221|gb|EHK49552.1| hypothetical protein TRIATDRAFT_26345, partial [Trichoderma
atroviride IMI 206040]
Length = 268
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 132/246 (53%), Gaps = 20/246 (8%)
Query: 15 TRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
++ P+P+ PT +EC L ++HG +R + + NSV
Sbjct: 17 SQSSPFPSFPHPTPQECSLAHRILASIHG----------ERRRPDKIIAPNSVA------ 60
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF---PTWEHVLAAEQKCIENAIRC 131
G+ SVLD LV+T+LSQNT+ NS +A S+ T+ W+ ++ ++ I+
Sbjct: 61 GCGDSPSVLDALVRTILSQNTSNKNSTRAKLSMDKTYGRSDNWDAIVQGGTDKLQQTIKS 120
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GGL+ K+ I NIL+ + G L +L S DE EL F+G+GPKT +CVL+F
Sbjct: 121 GGLSVVKSKVIMNILRQTKDQYGTYSLNHLLNASNDEAMRELLSFQGVGPKTASCVLLFC 180
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
LQ+D F VDTHV+ IS +GW P A+R + HL +P E K+ L+ L+ THG+ C
Sbjct: 181 LQRDSFAVDTHVYRISGLLGWRPGEANREEAQAHLEATVPDEDKYGLHVLMVTHGRTCDE 240
Query: 252 CIKKGG 257
C K GG
Sbjct: 241 C-KAGG 245
>gi|340516169|gb|EGR46419.1| predicted protein [Trichoderma reesei QM6a]
Length = 274
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 135/259 (52%), Gaps = 20/259 (7%)
Query: 3 KSRKRKQVEVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTR 62
++RK K T + P+P+ PT EC L +LHG +R +
Sbjct: 22 QARKLKSF-TTHSHSSPFPSFPHPTPTECSLAHRILSSLHG----------ERKRPEAIV 70
Query: 63 DKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF---PTWEHVLA 119
SV G SVLD LV+T+LSQNT++ NS +A ++ T+ W ++
Sbjct: 71 APTSV------AGCGNSPSVLDALVRTILSQNTSDRNSSRAKRAMDETYGGSDNWASIVE 124
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
+ ++ I GGL+ K+ I +IL GK L++L S DE EL F+G+
Sbjct: 125 GGTEKLQRTIHSGGLSVVKSRVIMDILHQTKARYGKYSLDHLLDASDDEAMRELLSFQGV 184
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
GPKT +CVL+F L++D F VDTHV+ IS +GW+P +A R + HL R+P E K+ L+
Sbjct: 185 GPKTASCVLLFCLRRDSFAVDTHVYRISSLLGWIPPSATREQAQAHLEARVPDEDKYGLH 244
Query: 240 CLLYTHGKLCRNCIKKGGN 258
L+ THGK C C +G N
Sbjct: 245 ILMVTHGKRCAECKARGKN 263
>gi|409074630|gb|EKM75023.1| hypothetical protein AGABI1DRAFT_24137, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 235
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 137/250 (54%), Gaps = 28/250 (11%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P H+ PTA+E I D L H + V R N ++ +VP
Sbjct: 2 PFPNHAHPTADEAVEIHDILTKAH----QPVSRRPPDHMSNSAQNCGNVP---------- 47
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAP 136
+V++ ++ T+LSQNT+ A KA ++L TF +E + AA ++ + +AIR GGLA
Sbjct: 48 --NVIEAIIGTILSQNTSNAVCAKAKSNLDKTFGRNNFEAIAAAPKQKVIDAIRSGGLAN 105
Query: 137 TKAACIKNILKCLLESKGKLCLEYLR----------GLSIDEIKAELSRFRGIGPKTVAC 186
KA I+ +L+ + E G L++L L DEI EL + G+GPKT +C
Sbjct: 106 KKARMIQGLLQAVKEKHGSYSLQHLARKPESTSSAPALGDDEIMDELLSYDGVGPKTASC 165
Query: 187 VLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG 246
VL+F + +D FPVDTHV +S +GW+P A+R HL+ R+P ELK+ L+ L++ HG
Sbjct: 166 VLLFCIGRDSFPVDTHVLRLSHLLGWIPPEANRVTAQAHLDIRVPAELKYGLHMLMFQHG 225
Query: 247 KLCRNCIKKG 256
+ C+ C + G
Sbjct: 226 RECKGCKQAG 235
>gi|302680965|ref|XP_003030164.1| hypothetical protein SCHCODRAFT_57851 [Schizophyllum commune H4-8]
gi|300103855|gb|EFI95261.1| hypothetical protein SCHCODRAFT_57851 [Schizophyllum commune H4-8]
Length = 317
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 130/241 (53%), Gaps = 17/241 (7%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P PT + R + D L HG P + + N + SVP
Sbjct: 47 PFPDFPHPTPSDARRVHDLLTEAHG--PRVRRTPDASSNANSAKTCGSVP---------- 94
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAP 136
+V++ L+ T+LSQNT+ NS A SL + F + + A + +AIR GGLA
Sbjct: 95 --NVIESLIGTILSQNTSGKNSSGAKRSLDAAFGRNNFAAIADAPTSAVADAIRSGGLAN 152
Query: 137 TKAACIKNILKCLLESKGKLCLEYLRGLSID-EIKAELSRFRGIGPKTVACVLMFHLQQD 195
KAA I+ +L+ + G L++L + D E+ EL + G+GPKT +CVL+F L ++
Sbjct: 153 KKAATIQRVLRDIKAKHGSYSLQHLADVCADAEVMRELMAYDGVGPKTASCVLLFCLGRE 212
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
F VDTHVF +SK +GWVP ADR +T HL+ RIP + K+ L+ L+ HG++C C K
Sbjct: 213 SFAVDTHVFRLSKLLGWVPPKADRVQTQAHLDLRIPGDRKYGLHVLMIDHGRICTGCKTK 272
Query: 256 G 256
G
Sbjct: 273 G 273
>gi|426195516|gb|EKV45446.1| hypothetical protein AGABI2DRAFT_44066, partial [Agaricus bisporus
var. bisporus H97]
Length = 234
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 136/250 (54%), Gaps = 28/250 (11%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P H+ PT +E I D L H + V R N ++ +VP
Sbjct: 1 PFPNHAHPTTDEAVEIHDILTKAH----QPVSRRPPDHMSNSAQNCGNVP---------- 46
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAP 136
+V++ +V T+LSQNT+ A KA ++L TF +E + AA ++ + +AIR GGLA
Sbjct: 47 --NVIEAIVGTILSQNTSNAICAKAKSNLDKTFGRNNFEAIAAAPKQKVIDAIRSGGLAN 104
Query: 137 TKAACIKNILKCLLESKGKLCLEYLR----------GLSIDEIKAELSRFRGIGPKTVAC 186
KA I+ +L+ + E G L++L L DEI EL + G+GPKT +C
Sbjct: 105 KKARMIQGLLQAVKEKHGSYSLQHLARKPESTSSAPALRDDEIMDELLSYDGVGPKTASC 164
Query: 187 VLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG 246
VL+F + +D FPVDTHV +S +GW+P A+R HL+ R+P ELK+ L+ L++ HG
Sbjct: 165 VLLFCIGRDSFPVDTHVLRLSHLLGWIPPEANRVTAQAHLDIRVPAELKYGLHMLMFQHG 224
Query: 247 KLCRNCIKKG 256
+ C+ C + G
Sbjct: 225 RECKGCKQAG 234
>gi|328858824|gb|EGG07935.1| hypothetical protein MELLADRAFT_77474 [Melampsora larici-populina
98AG31]
Length = 371
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 157/282 (55%), Gaps = 21/282 (7%)
Query: 5 RKRKQVEVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDK 64
+ KQ+ +T + P+P PT E + + L LHG P+ + + ++ N +
Sbjct: 94 KTSKQIVLTSS---PFPNFPHPTLFESQEVCKILSNLHGGTPKRPEKSSNQISPNPKIN- 149
Query: 65 NSVPLDMNEYDE-GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF--PTWEHVLAAE 121
++ + GE ++L+ L++T+LSQNT+ +NS +A++ + + +E + +
Sbjct: 150 -----NLGTAESCGEVSNILEALIRTILSQNTSTSNSNRAYSKIIERYGNANFEDIRKSG 204
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLL-ESKGKLCLEYLRGLSIDEIKAELSRFRGIG 180
K + IR GGLA K+ I IL ++ + G L L+ LR +S +++ EL F G+G
Sbjct: 205 IKELTETIRVGGLAERKSKVIITILNQIISKGDGILSLDKLRLMSDEQVMQELVEFDGVG 264
Query: 181 PKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNC 240
KT ACV MF L +D FPVDTHV +SK++GWVP A R++T+ HLN ++P +LK+ L+
Sbjct: 265 IKTGACVSMFCLGRDTFPVDTHVHRLSKSLGWVPPKATRDQTFFHLNLQLPNDLKYALHI 324
Query: 241 LLYTHGKLCRNCIKKG------GNRQRKESAGN--LCPLLNY 274
LL HG+ CR C N+ +K+ AG CPL ++
Sbjct: 325 LLIRHGQSCRQCSPTSKAPINPTNKSKKKIAGTELECPLTSF 366
>gi|429858184|gb|ELA33014.1| base excision dna repair protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 309
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 128/231 (55%), Gaps = 33/231 (14%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
+ P+P PT +ECR L LHG + R + +K + TR
Sbjct: 106 KSPFPDFPHPTPDECRLAHRILADLHG-----KRERPKEVKASTTR-----------AGC 149
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAP 136
G+ SVLD LV+T+LSQNT++ NS +A S+ + AI+CGGL+
Sbjct: 150 GDSPSVLDALVRTILSQNTSDTNSTRAKRSMD-----------------DEAIKCGGLSA 192
Query: 137 TKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD 196
K+ I +IL + E GK L++L S ++ EL F+G+GPKT +CVL+F LQ++
Sbjct: 193 VKSKVIISILNQVKEKYGKYSLDHLFSASNEDAMQELISFQGVGPKTASCVLLFCLQRES 252
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
F VDTHV+ I+ +GW P +A R++T+ HL+ RIP E K+ L+ LL HGK
Sbjct: 253 FAVDTHVWRITGLLGWRPKSASRDETHAHLDVRIPDEDKYGLHILLVKHGK 303
>gi|389748166|gb|EIM89344.1| DNA glycosylase [Stereum hirsutum FP-91666 SS1]
Length = 405
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 128/245 (52%), Gaps = 20/245 (8%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+PT+ PT E + L A H P R ++ KNS G
Sbjct: 115 PFPTYPHPTPSEAEEVYQILAAAH---PGKAHVRKPVAGPSIGMTKNSA------ETCGR 165
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTF--PTWEHVLAAEQKCIENAIRCGGLAP 136
+VLD L+ T+LSQNT NS A SL + F + + A + + AI+ GGLA
Sbjct: 166 SPNVLDALIGTILSQNTNSKNSTGAKKSLDAAFCFHKFSRIANAPTEDVVEAIKSGGLAR 225
Query: 137 TKAACIKNILKCLLESKGKLCLEYL-RGLSIDE-IKAELSRFRGIGPKTVACVLMFHLQQ 194
KA I+ +LK + E G+ L++L G DE I EL + G+GPKT ACVL+F L +
Sbjct: 226 RKAGIIQGLLKSVKEKWGRYSLQFLMEGRWSDEAIMRELVSYPGVGPKTAACVLLFCLGR 285
Query: 195 DDFPVDTHVFEISKAIGWVP-------TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
D F VDTHVF +S+ +GWVP A DR T +HL+ IP LK+ L+ L+ THG+
Sbjct: 286 DSFAVDTHVFRLSRVLGWVPRAKSATKVAIDRVNTQMHLDVHIPPHLKYPLHVLMVTHGR 345
Query: 248 LCRNC 252
C+ C
Sbjct: 346 ACKGC 350
>gi|392588793|gb|EIW78124.1| DNA glycosylase, partial [Coniophora puteana RWD-64-598 SS2]
Length = 276
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 139/270 (51%), Gaps = 34/270 (12%)
Query: 15 TRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
+ P+P + P+ E+ I D L + FP N K+ PLD
Sbjct: 18 SSTSPFPNFTAPSTEDVNAIYDLLAST--FP-------------NGAAPKHRKPLDSANS 62
Query: 75 DE--GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA----AEQKCIENA 128
G +VLD L+ T+LSQNT+ ANS A SL + F E A A + A
Sbjct: 63 GATCGATPNVLDSLIGTILSQNTSNANSSSAKNSLDAAFGRGEKAFAKMATAPAADVVEA 122
Query: 129 IRCGGLAPTKAACIKNILKCLLES--KGKLCLEYLRG--LSIDEIKAELSRFRGIGPKTV 184
I+ GGLA KA I+N+L + E+ +G+ L++L +S +E+ L ++ G+GPKT
Sbjct: 123 IKHGGLANRKARIIQNLLVSVKEAHPEGRYDLQHLLAGDVSDEEVMRSLVQYNGVGPKTA 182
Query: 185 ACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYT 244
ACVL F + +D F VDTHVF I++ +GWVP ADR T HL R+P ELK+ L+ +
Sbjct: 183 ACVLAFCMGRDAFAVDTHVFRITRMLGWVPRHADRVSTQAHLELRVPPELKYGLHVMFVK 242
Query: 245 HGKLCRNCIKKGGNRQRKESAGNLCPLLNY 274
HG+ C+ C K G+R CPL +
Sbjct: 243 HGRACKGC--KNGSRGE-------CPLKTW 263
>gi|440791540|gb|ELR12778.1| base excision DNA repair protein, HhHGPD subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 494
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 114/173 (65%), Gaps = 3/173 (1%)
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-TWEHVLAAEQKCIENAIRCGGLA 135
G +++VL L+ TVLSQNTT+ NS A+A+L+ + WE V A+ + + IR GGLA
Sbjct: 191 GGQKTVLASLISTVLSQNTTDRNSSAAWANLQRAYKEDWERVRTAKPSQLADVIRTGGLA 250
Query: 136 PTKAACIKNILKCLLESK-GKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ 194
K I+ +L L E + G+L LE+LR + +E+K L++++GIGPKT +CVLMF++++
Sbjct: 251 QRKGGIIQGLLNQLHEERDGELSLEHLRDMPTEEVKHALTKYKGIGPKTASCVLMFNMKR 310
Query: 195 DDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
DFPVDTHV +S +G+V R +TY +N +P E+K D++ LL HGK
Sbjct: 311 ADFPVDTHVHRVSTRLGFV-RGTTREQTYEFMNATMPDEIKRDMHVLLIRHGK 362
>gi|449541266|gb|EMD32251.1| hypothetical protein CERSUDRAFT_22472, partial [Ceriporiopsis
subvermispora B]
Length = 275
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 98/275 (35%), Positives = 139/275 (50%), Gaps = 42/275 (15%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQ-RLKHNMTRDKNSVPLDMNEYDEG 77
P+P PT +E + L H P K + + R +N R SVP
Sbjct: 1 PFPDFYHPTPKEAEEVLTVLAEEH---PHVAKEQTRPRDGNNAARTCGSVP--------- 48
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE--QKCIENAIRCGGLA 135
+VL+ L+ T+LSQNT+ NS A SL + F + AE + + AIR GGLA
Sbjct: 49 ---NVLESLIGTILSQNTSGKNSTAAKHSLDARFGRNDFAAIAEAPKSEVVEAIRMGGLA 105
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGL----------------SIDEIKAELSRFRGI 179
KA I+ +LK + E G L++L G+ S +E EL + G+
Sbjct: 106 NKKAGVIQQVLKEVRERHGSYSLQHLAGVVEKEAKGKAKSSGTPVSDEEAMQELVSYDGV 165
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
GPKT +CVL+F L + FPVDTHVF +SK +GWVP ADR HL+ +IP++LK+ L+
Sbjct: 166 GPKTASCVLLFCLGRASFPVDTHVFRLSKLLGWVPAKADRVTAQAHLDLKIPQDLKYGLH 225
Query: 240 CLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNY 274
L+ HG+ C+ C K G+R CPL ++
Sbjct: 226 VLMIAHGRRCKGC-KTSGSRTS-------CPLKDW 252
>gi|336375725|gb|EGO04061.1| hypothetical protein SERLA73DRAFT_175790 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388834|gb|EGO29978.1| hypothetical protein SERLADRAFT_458392 [Serpula lacrymans var.
lacrymans S7.9]
Length = 366
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 16/244 (6%)
Query: 15 TRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
T P+P+ PT E I ELLA + P + R N R SVP
Sbjct: 84 TTASPFPSFHHPTNSEATEIH-ELLAKY-TPGGAPRLRAPSPSANAARTCGSVP------ 135
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCG 132
+VL+ L+ T+LSQNT+ ANS +A SL + F + + A + + AI G
Sbjct: 136 ------NVLESLIGTILSQNTSSANSTRAKHSLDTAFGRNDFAAIAKAARPDVVAAIASG 189
Query: 133 GLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHL 192
GLA KA I++IL+ + + G L++L + +E EL + G+GPKT ACVL F L
Sbjct: 190 GLANKKAKTIQDILESVKQRHGAYNLQHLADVPDEEAMRELVSYNGVGPKTAACVLSFCL 249
Query: 193 QQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
++ F VDTHV+ +S+ +GWVP +ADR HL+ +P ELK+ L+ ++ HG++C C
Sbjct: 250 GRESFAVDTHVYRLSRLLGWVPQSADRVLAQAHLDVTLPGELKYALHVMMVKHGRICSGC 309
Query: 253 IKKG 256
K G
Sbjct: 310 KKDG 313
>gi|449015802|dbj|BAM79204.1| similar to endonuclease III [Cyanidioschyzon merolae strain 10D]
Length = 276
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 117/199 (58%), Gaps = 11/199 (5%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
SVL+ LV+T+LSQNTT+ S A+ +L+S + W VL A IE IR GGLA TKA
Sbjct: 69 SVLEALVRTILSQNTTDKLSGAAYRALRSRYKDWADVLHAPVGEIEETIRIGGLARTKAQ 128
Query: 141 CIKNILKCL--------LESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHL 192
I++IL+ L ++ LE+LR + ++ L+R+ G+GPKT ACV MF L
Sbjct: 129 HIQDILRELEHNAATTGTDTDWTQGLEFLRNVPTAQVMEYLTRYPGVGPKTAACVAMFTL 188
Query: 193 QQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
++DD FPVDTH+F ++K +GWVP R + + L IP L + ++ L+ HG+ +
Sbjct: 189 ERDDSFPVDTHIFRLAKRLGWVPNGHTREQAQVDLENLIPSTLHYPMHILMIEHGR--KV 246
Query: 252 CIKKGGNRQRKESAGNLCP 270
C +G Q + AG CP
Sbjct: 247 CTARGPRCQHCKLAGLGCP 265
>gi|396464023|ref|XP_003836622.1| hypothetical protein LEMA_P041580.1 [Leptosphaeria maculans JN3]
gi|312213175|emb|CBX93257.1| hypothetical protein LEMA_P041580.1 [Leptosphaeria maculans JN3]
Length = 512
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 134/294 (45%), Gaps = 76/294 (25%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
PYP + PT EEC + L +HG + ++P E G
Sbjct: 157 PYPNYPHPTPEECEEVTRLLSKVHG----------------KVQAPKTIPTPSLEVSGCG 200
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E SVLD L++T LS T+ NS +AFA L S F W V A+QK +
Sbjct: 201 EVPSVLDALIRTRLSAATSGTNSSRAFAGLVSKFGILKEGVGKGSVDWNKVRLADQKEVF 260
Query: 127 NAIRCGGLAPTKAACIKNILKCLLE----------------SKGK--------------- 155
AI+ GGLA K+ IK IL+ + E SKG+
Sbjct: 261 EAIKSGGLADVKSKDIKKILQMVWEENQARREELISKEATGSKGEAAKDKENEIEKAESN 320
Query: 156 -LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVP 214
+ L++L GLS ++ L+++ GIGPKT +CVL+F LQ+ F VDTHVF + + +GWVP
Sbjct: 321 IVSLDHLHGLSSEDAFTALTKYPGIGPKTASCVLLFCLQRPSFAVDTHVFRLCRWLGWVP 380
Query: 215 TAAD----------------RNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
D RN TY H R+P +LK+ L+ LL HGK C C
Sbjct: 381 PPGDSRGLAPGAKGTFAGPTRNSTYAHCEVRVPDDLKYPLHQLLIKHGKTCPRC 434
>gi|395325971|gb|EJF58386.1| DNA glycosylase [Dichomitus squalens LYAD-421 SS1]
Length = 353
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 127/259 (49%), Gaps = 34/259 (13%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P PT E + L H P+ +R K + NS G+
Sbjct: 50 PFPDFPHPTPAEAEQVHALLATTH---PDIASSSARRSKPSDDSSSNSA------RTCGK 100
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAP 136
SVLD L+ T+LSQNT+ NS A L + F ++ + A + + AI+ GGLA
Sbjct: 101 VSSVLDSLIGTILSQNTSSRNSTAAKHGLDAAFGRHNFQAIAEASKDQVVEAIKTGGLAN 160
Query: 137 TKAACIKNILKCLLESKGKLCLEYLR-----------------------GLSIDEIKAEL 173
KAA I+ IL+ + + G+ L++L +S +E EL
Sbjct: 161 KKAAVIQKILREVYDRHGEYSLQHLARVVQSDVDVNSKAKAEGSSQGRAAVSDEEAMQEL 220
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
+ G+GPKT +CVL+F L + FPVDTHVF +S+ +GWVP ADR HL+ ++P
Sbjct: 221 VSYDGVGPKTASCVLLFCLGRSSFPVDTHVFRLSRLLGWVPARADRVTAQAHLDLKVPDH 280
Query: 234 LKFDLNCLLYTHGKLCRNC 252
LK+ L+ L+ HG+ C+ C
Sbjct: 281 LKYGLHVLMVGHGRRCKGC 299
>gi|330934949|ref|XP_003304766.1| hypothetical protein PTT_17442 [Pyrenophora teres f. teres 0-1]
gi|311318473|gb|EFQ87134.1| hypothetical protein PTT_17442 [Pyrenophora teres f. teres 0-1]
Length = 527
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 140/323 (43%), Gaps = 80/323 (24%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
PYP + PTAEEC + L +HG ++P E G
Sbjct: 158 PYPNYPHPTAEECEEVTRLLSKVHG----------------KVEAPKTIPAPSLEVSGCG 201
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E SVLD L++T LS T+ NS +AFA L S F W V A+QK I
Sbjct: 202 EVPSVLDALIRTRLSAATSGTNSSRAFAGLVSKFGILKEGVGKGSVDWNRVRQADQKEIF 261
Query: 127 NAIRCGGLAPTKAACIKNILKC-----------LLESKGK-------------------- 155
AI+ GGLA K+ IK IL+ LL S GK
Sbjct: 262 EAIKSGGLADVKSKDIKKILQMVWEENQARREELLSSSGKAPGSADEAEGEKHAEVEKAE 321
Query: 156 ---LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGW 212
+ L++L LS D+ L+++ GIGPKT +CVL+F LQ+ F VDTHVF + K +GW
Sbjct: 322 QNIVSLDHLHLLSNDDAFNALTKYPGIGPKTASCVLLFCLQRPSFAVDTHVFRLCKWLGW 381
Query: 213 VPTAAD----------------RNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKG 256
VP D RN TY H R+P LK+ L+ LL HGK C C
Sbjct: 382 VPPPGDPAGLAPGAKGTFTGPTRNSTYAHCEVRVPDHLKYPLHQLLIRHGKTCPRCRAIT 441
Query: 257 GNRQRKESAGNLCPLLNYCEKSN 279
G G CP+ + +++
Sbjct: 442 GESSEGWDEG--CPIDHLVQRTG 462
>gi|390601386|gb|EIN10780.1| DNA glycosylase [Punctularia strigosozonata HHB-11173 SS5]
Length = 359
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 131/255 (51%), Gaps = 23/255 (9%)
Query: 6 KRKQVEVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKN 65
K+ Q+ T P+P +RPT E + LL+ FP K R K+N
Sbjct: 54 KKLQLLATYASTSPFPDFARPTPIEAHEVHRLLLSQ--FPELATKKRKADEKNNAAGTCG 111
Query: 66 SVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQK 123
VP +V++ L+ + NT+ NS A SL + F + + A ++
Sbjct: 112 GVP------------NVIESLI-GMSRHNTSSKNSTGAKRSLDAAFGRNNFAAIADAPRE 158
Query: 124 CIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYL------RGLSIDEIKAELSRFR 177
+ +AIR GGLA KA I+N+LK + G L++L LS DEI EL +
Sbjct: 159 RVVDAIRHGGLANKKAGVIQNLLKEIKARHGDYSLQHLASRPSKSALSDDEIMHELVSYD 218
Query: 178 GIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFD 237
G+GPKT +CVL+F L++ F VDTHVF +SK +GWVP +DR HL+ RIP ELK+
Sbjct: 219 GVGPKTASCVLLFCLERPSFAVDTHVFRLSKMLGWVPAKSDRVLAQAHLDARIPGELKYG 278
Query: 238 LNCLLYTHGKLCRNC 252
L+C HG++C C
Sbjct: 279 LHCGFVKHGRVCPAC 293
>gi|409048228|gb|EKM57706.1| hypothetical protein PHACADRAFT_251498 [Phanerochaete carnosa
HHB-10118-sp]
Length = 323
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 132/255 (51%), Gaps = 29/255 (11%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
+ P+P ++RPT EE + + D L H P RN +++ VP
Sbjct: 40 ESPFPDYARPTPEEAQEVYDVLAREH--PDIASTSRNPSSENDAAATCGKVP-------- 89
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGL 134
+VL+ LV T+LSQNT+ N A +L F +E ++ A + + +A+R GGL
Sbjct: 90 ----NVLESLVGTILSQNTSAKNYTAAKRNLDVKFGRNNFEAIVNAPKSELVDALRTGGL 145
Query: 135 APTKAACIKNILKCLLESKGKLCLEYLRGL-------------SIDEIKAELSRFRGIGP 181
A KA I+ IL + E G L++L G+ S ++ EL + G+GP
Sbjct: 146 ANKKAEVIQRILHEVKERHGSYSLQHLAGVVESQEPGEEAKVFSDEDAMKELVSYNGVGP 205
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT +CVL+F L + F VDTHVF +S+ +GWVP A+R HL+ R+P +LK+ L+ L
Sbjct: 206 KTASCVLLFCLGRASFAVDTHVFRLSRLLGWVPARANRVTAQAHLDLRVPNDLKYGLHVL 265
Query: 242 LYTHGKLCRNCIKKG 256
+ HG+ C C +G
Sbjct: 266 MVGHGRQCNGCRGRG 280
>gi|342873258|gb|EGU75465.1| hypothetical protein FOXB_14013 [Fusarium oxysporum Fo5176]
Length = 552
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 138/313 (44%), Gaps = 68/313 (21%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
P+P S P+AEEC + L +HG + +P E G
Sbjct: 238 PFPEWSAPSAEECEEVYRRLAKVHG----------------EAKAPEKIPAPSLEVSGCG 281
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E SVLD L++T LS NT+ NS AF L +TF T W V A I
Sbjct: 282 EVPSVLDALIRTRLSANTSNRNSSAAFRGLVTTFGTVDKGIGKGSVDWNKVRVAPLPTIV 341
Query: 127 NAIRCGGLAPTKAACIKNILKCLLESKGK------------------------------- 155
+I+ GGLA K IK IL+ + E K
Sbjct: 342 ESIKTGGLAQVKGKDIKAILELVHEENTKRREAFMQEKKGGNLSGITGADNKTQGQKDLE 401
Query: 156 --------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEIS 207
L L+++ G++ DE L++F GIG KT +CV++F LQQ F VDTHV IS
Sbjct: 402 ILKTEQDILSLDHIHGMAPDEAMQTLTKFPGIGVKTASCVILFCLQQPSFAVDTHVHRIS 461
Query: 208 KAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
+ W+P A R++T+ HL RIP LK+ L+ L HG+ C C + + +E + +
Sbjct: 462 GWLKWIPPKATRDQTFSHLEVRIPNHLKYGLHKLFVQHGRSCIRC-RANTSEGSEEWSKS 520
Query: 268 LCPLLNYCEKSNK 280
CPL E++ K
Sbjct: 521 KCPLDGLMERTGK 533
>gi|451850889|gb|EMD64190.1| hypothetical protein COCSADRAFT_36763 [Cochliobolus sativus ND90Pr]
Length = 526
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 144/324 (44%), Gaps = 78/324 (24%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
Q PYP + PTAEEC + L +HG K + + LD++
Sbjct: 155 QTPYPNYPHPTAEECEEVTRLLSKVHG-------------KVEAPKTIPAPSLDVSGC-- 199
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCI 125
GE SVLD L++T LS T+ NS +AFA L + F W V A+QK I
Sbjct: 200 GEVPSVLDALIRTRLSAATSGTNSSRAFAGLVTKFGILKEGVGKGSVDWNKVRQADQKEI 259
Query: 126 ENAIRCGGLAPTKAACIKNILKCLLE---------------------------------- 151
AI+ GGLA K+ IK IL+ + E
Sbjct: 260 FEAIKSGGLADVKSKDIKRILEMVWEENQTRRKELQSSSNKAPGSANEAEEEKSAEIEKA 319
Query: 152 SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIG 211
S+ + L++L LS D+ L+++ GIGPKT +CVL+F LQ+ F VDTHVF + + +G
Sbjct: 320 SQDVISLDHLHLLSNDDAFNALTKYPGIGPKTASCVLLFCLQRPSFAVDTHVFRLCQWLG 379
Query: 212 WVPTAAD----------------RNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
WVP D RN TY H R+P LK+ L+ LL HGK C C
Sbjct: 380 WVPPPGDSRGLAPGAKGTFAGPTRNSTYAHCEVRVPDHLKYPLHQLLIKHGKTCPRCRAI 439
Query: 256 GGNRQRKESAGNLCPLLNYCEKSN 279
G + G CP+ + +++
Sbjct: 440 TGESSEGWNKG--CPIEHLVQRTG 461
>gi|407925000|gb|EKG18022.1| hypothetical protein MPH_04712 [Macrophomina phaseolina MS6]
Length = 517
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/313 (33%), Positives = 147/313 (46%), Gaps = 68/313 (21%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPL-DMNEYD 75
Q PYP + PT EEC+ + L +HG + N+ ++ +P+ +
Sbjct: 168 QSPYPDYPHPTPEECQEVTRILSKMHG-------------EVNVPKE---IPIPSLTTSG 211
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKC 124
GE SVLD L++T LS T+ NS +AF L F W+ V A+ K
Sbjct: 212 CGEVPSVLDALIRTRLSAATSGTNSSRAFQGLVKRFGIIQEGVGKGSVNWDAVRVADTKE 271
Query: 125 IENAIRCGGLAPTKAACIKNILKCLL-----------------------ESKGK------ 155
+ AI+ GGLA K+ IK IL+ + ES G+
Sbjct: 272 VFEAIKSGGLADVKSKDIKKILQMVYEENQARHDALTKDSATTPAGAENESVGERKLEVA 331
Query: 156 ------LCLEYLRGLSI-DEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
L L+YL LS DEI A L R+ GIG KT +CVL+F Q+ F VDTHVF ++K
Sbjct: 332 RAEANVLSLDYLHSLSSNDEIMAHLLRYPGIGVKTASCVLLFCFQRPSFAVDTHVFRLAK 391
Query: 209 AIGWVPTAAD--RNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAG 266
+ WVP+ + R+ TY HL+ RIP +LK+ L+ LL HGK C C G G
Sbjct: 392 WLNWVPSDKNVTRDSTYAHLDVRIPDDLKYALHQLLIRHGKACPRCRAITGTSSEGWEKG 451
Query: 267 NLCPLLNYCEKSN 279
CP+ + +++
Sbjct: 452 --CPIDHLVKRTG 462
>gi|189200344|ref|XP_001936509.1| base excision DNA repair protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983608|gb|EDU49096.1| base excision DNA repair protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 522
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 140/323 (43%), Gaps = 80/323 (24%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
PYP ++ PTAEEC + L +HG ++P E G
Sbjct: 153 PYPNYAHPTAEECEEVTRLLSKVHG----------------KVEAPKTIPAPSLEVSGCG 196
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E SVLD L++T LS T+ NS +AFA L S F W V A+QK +
Sbjct: 197 EVPSVLDALIRTRLSAATSGTNSSRAFAGLVSKFGILKEGVGKGSVDWNRVRQADQKEVF 256
Query: 127 NAIRCGGLAPTKAACIKNILKC-----------LLESKGK-------------------- 155
AI+ GGLA K+ IK IL+ LL S K
Sbjct: 257 EAIKSGGLADVKSKDIKKILQMVWEENQARREELLSSSDKAPGSANEAEGEKHAEVAKAE 316
Query: 156 ---LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGW 212
+ L++L LS D+ L+++ GIGPKT +CVL+F LQ+ F VDTHVF + K +GW
Sbjct: 317 QNIISLDHLHLLSNDDAFNALTKYPGIGPKTASCVLLFCLQRPSFAVDTHVFRLCKWLGW 376
Query: 213 VPTAAD----------------RNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKG 256
VP D RN TY H R+P LK+ L+ LL HGK C C
Sbjct: 377 VPPPGDPAGLAPGAKGTFAGPTRNSTYAHCEVRVPDHLKYPLHQLLIRHGKTCPRCRAIT 436
Query: 257 GNRQRKESAGNLCPLLNYCEKSN 279
G G CP+ + +++
Sbjct: 437 GESSEGWDEG--CPIDHLVQRTG 457
>gi|451996449|gb|EMD88916.1| hypothetical protein COCHEDRAFT_1226992 [Cochliobolus
heterostrophus C5]
Length = 525
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 143/324 (44%), Gaps = 78/324 (24%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
Q PYP + PTAEEC + L +HG K + + LD++
Sbjct: 153 QTPYPNYPHPTAEECEEVTRLLSKVHG-------------KIEAPKTVPAPSLDVSGC-- 197
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCI 125
GE SVLD L++T LS T+ NS +AFA L + F W V A+QK I
Sbjct: 198 GEVPSVLDALIRTRLSAATSGTNSSRAFAGLVAKFGILKEGVGKGSVDWNKVRQADQKEI 257
Query: 126 ENAIRCGGLAPTKAACIKNILKCLLE---------------------------------- 151
AI+ GGLA K+ IK IL+ + E
Sbjct: 258 FEAIKSGGLADVKSKDIKKILQMVWEENQARRKELQSSSHKAPGSANEAEEEKNTEIEKA 317
Query: 152 SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIG 211
++ + L++L LS ++ L+++ GIGPKT +CVL+F LQ+ F VDTHVF + K +G
Sbjct: 318 NQDVVSLDHLHLLSSEDAFNALTKYPGIGPKTASCVLLFCLQRPSFAVDTHVFRLCKWLG 377
Query: 212 WVPTAAD----------------RNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
WVP D RN TY H RIP LK+ L+ LL HGK C C
Sbjct: 378 WVPPPGDSRGLAPGAKGTFAGPTRNSTYAHCEVRIPDHLKYQLHYLLIKHGKSCPRCRAI 437
Query: 256 GGNRQRKESAGNLCPLLNYCEKSN 279
G G CP+ + +++
Sbjct: 438 TGESSEGWDKG--CPIEHLVQRTG 459
>gi|452847106|gb|EME49038.1| hypothetical protein DOTSEDRAFT_49374 [Dothistroma septosporum
NZE10]
Length = 497
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 132/288 (45%), Gaps = 67/288 (23%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
Q P+P + RPT EEC + L +HG + K P ++
Sbjct: 148 QTPFPDYLRPTPEECFEVTRLLEKVHG---------------KVVAPKAIPPPSLDVAGC 192
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCI 125
GE SVLD L++T LS NTT NS AF L + F T W+ V A QK +
Sbjct: 193 GEVPSVLDALIRTRLSANTTNKNSSTAFQGLVARFGTIKDGIGKGSVDWDVVRRAPQKEV 252
Query: 126 ENAIRCGGLAPTKAACIKNILKCLLE-------------------------------SKG 154
AI GGLA K+ I+ IL+ E +K
Sbjct: 253 FKAIERGGLAQVKSKDIQAILQIAYEENQARKAAFTDPSDNPAGAENEPEKEKQNEVTKA 312
Query: 155 K---LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIG 211
K + L++L LS D+ ++ GIGPKT +CV +F LQ+ F VDTHVF + + +G
Sbjct: 313 KQNIISLDHLHLLSTDDAINKMLSLPGIGPKTASCVALFCLQRPSFAVDTHVFRLCQYLG 372
Query: 212 WVP-------TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
WVP + DRN TY H + RIP ELK+ L+ LL HGK+C C
Sbjct: 373 WVPKSTRKGQSKVDRNTTYSHCDVRIPDELKYPLHQLLIKHGKVCPRC 420
>gi|453088940|gb|EMF16980.1| DNA glycosylase [Mycosphaerella populorum SO2202]
Length = 489
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 135/306 (44%), Gaps = 70/306 (22%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P + RPT EC + L HG ++ K P ++ GE
Sbjct: 140 PFPDYDRPTRAECEEVVRILEKKHG---------------KVSVPKAIPPPSLDVAGCGE 184
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIEN 127
SVLD L++T LS NTT +NS AF L S F T W V A Q+ +
Sbjct: 185 VPSVLDALIRTRLSANTTNSNSSTAFRGLVSRFGTLKEGIGKGSVDWNAVRLAPQQDVFK 244
Query: 128 AIRCGGLAPTKAACIKNILKCLLESKGK-------------------------------- 155
AI GGLA K+ IKNIL+ + E +
Sbjct: 245 AIERGGLANVKSKDIKNILQMVYEENQERRAALLTSNDNASESQSAPESSTQTEEITKAD 304
Query: 156 ---LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGW 212
+ L++L +S ++ +L + GIGPKT +CV +F LQ+ F VDTHVF + + +GW
Sbjct: 305 QDVISLDHLHLMSTNDAIDKLITYPGIGPKTASCVALFCLQRPSFAVDTHVFRLVQYLGW 364
Query: 213 VPTA-------ADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
VP + DRN TY H + +IP E K+ L+ LL HGK C C + Q E
Sbjct: 365 VPKSTKKGQPKVDRNTTYSHCDAKIPDEYKYKLHYLLIKHGKTCPRC--RAATGQSSEGW 422
Query: 266 GNLCPL 271
CP+
Sbjct: 423 DEGCPM 428
>gi|302921021|ref|XP_003053199.1| hypothetical protein NECHADRAFT_77955 [Nectria haematococca mpVI
77-13-4]
gi|256734139|gb|EEU47486.1| hypothetical protein NECHADRAFT_77955 [Nectria haematococca mpVI
77-13-4]
Length = 485
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 137/314 (43%), Gaps = 72/314 (22%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
P+P + P+AEEC + L ++HG + + +P E G
Sbjct: 173 PFPDWTAPSAEECEEVYRRLASIHG----------------EAKAPDKIPAPSLEVSGCG 216
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E SVLD L++T LS NT+ NS AF L + F T W V A I
Sbjct: 217 EVPSVLDALIRTRLSANTSNRNSSAAFRGLVNAFGTVDEGIGKGSVDWNKVRTAPLTTIV 276
Query: 127 NAIRCGGLAPTKAACIKNILKCLLE-----------------------SKGK-------- 155
AI+ GGLA K IK IL+ + E + GK
Sbjct: 277 EAIKTGGLAQVKGKDIKAILELVHEENVKRRDAFIQERKSGKMSGAFKADGKTQGQKDLE 336
Query: 156 --------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEIS 207
L L+++ G+ DE L++F GIG KT +CV++F LQQ F VDTHV ++
Sbjct: 337 ILKTEQDILSLDHIHGMHPDEAMQTLTKFPGIGVKTASCVILFCLQQPSFAVDTHVHRLT 396
Query: 208 KAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
+ W+P A R++T+ HL RIP LK+ L+ L HG RNCI+ N N
Sbjct: 397 GWLKWMPPKATRDQTFSHLEVRIPNHLKYGLHKLFVQHG---RNCIRCRANTSEGSEEWN 453
Query: 268 --LCPLLNYCEKSN 279
CPL E++
Sbjct: 454 NEECPLEGLVERTG 467
>gi|449298566|gb|EMC94581.1| hypothetical protein BAUCODRAFT_73567 [Baudoinia compniacensis UAMH
10762]
Length = 452
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 129/288 (44%), Gaps = 69/288 (23%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
PYP + RPTAEECR + L +HG K + + LD++ GE
Sbjct: 106 PYPDYLRPTAEECREVVRLLEKVHG-------------KVVVPKAVPPPSLDVSGC--GE 150
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIEN 127
SVLD LV+T LS NTT NS AF L F T W+ V A QK +
Sbjct: 151 VPSVLDALVRTRLSANTTNKNSSTAFQGLVKRFGTLQEGIGKGSVDWDAVRRAPQKEVFK 210
Query: 128 AIRCGGLAPTKAACIKNILKCLLE------------------------------------ 151
AI GGLA K+ I+ IL+ E
Sbjct: 211 AIERGGLADRKSKDIQAILQLAYEENQERKAALTAESANATAVGAEQEAESEKHAEVEKA 270
Query: 152 SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIG 211
S+ + L++L LS ++ + GIGPKT +CV +F LQ+ F VDTHVF + + +G
Sbjct: 271 SQNIISLDHLHLLSTSAAIEKMLSYPGIGPKTASCVALFCLQRPSFAVDTHVFRLCQYLG 330
Query: 212 WVPTA-------ADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
WVP DRN TY H + RIP E K+ L+ LL HGK C C
Sbjct: 331 WVPKTVKKGQPKVDRNTTYSHCDVRIPDEYKYPLHQLLIKHGKTCPRC 378
>gi|154302382|ref|XP_001551601.1| hypothetical protein BC1G_09975 [Botryotinia fuckeliana B05.10]
Length = 548
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 135/307 (43%), Gaps = 70/307 (22%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGF--PPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
+ P+P H PTA+E + L ALHG PP V ++ +
Sbjct: 183 ETPFPDHISPTAQEAETVNSLLTALHGEVKPPGTVPAPSETVTGC--------------- 227
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQK 123
GE VLD ++T+LS TT N+ K+ A LK+ + +WE VLA+ ++
Sbjct: 228 --GEVPDVLDATMRTLLSAATTAGNANKSMAGLKAEYGLRTSGKGAGSVSWEAVLASSKE 285
Query: 124 CIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSID--------------EI 169
+E AIR GGLA KA IK IL+ + + L L+G+ D +
Sbjct: 286 DVEEAIRSGGLAKVKAGYIKAILQVVFDKNTDLLEALLKGVETDVPVPFVGKVLETKEQK 345
Query: 170 KAELSRFR-------------------------GIGPKTVACVLMFHLQQDDFPVDTHVF 204
+AE+ R GIG KT ACV +F L + F VDTHV+
Sbjct: 346 EAEIKSLRENMLSLDYVHTLDKPAAMRVLMDLPGIGVKTAACVALFCLGRPSFAVDTHVW 405
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKES 264
+GWVP A R++T+ H RIP LK+ L+ L HGK C C + + +
Sbjct: 406 RHCMWLGWVPEKASRDQTFSHCEVRIPDHLKYSLHQLFLRHGKTCGRC-RAATSEGSADW 464
Query: 265 AGNLCPL 271
+CP+
Sbjct: 465 ESTVCPI 471
>gi|347828944|emb|CCD44641.1| hypothetical protein [Botryotinia fuckeliana]
Length = 548
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 135/307 (43%), Gaps = 70/307 (22%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGF--PPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
+ P+P H PTA+E + L ALHG PP V ++ +
Sbjct: 183 ETPFPDHISPTAQEAETVNSLLTALHGEVKPPGTVPAPSETVTGC--------------- 227
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQK 123
GE VLD ++T+LS TT N+ K+ A LK+ + +WE VLA+ ++
Sbjct: 228 --GEVPDVLDATMRTLLSAATTAGNANKSMAGLKAEYGLRTSGKGAGSVSWEAVLASSKE 285
Query: 124 CIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSID--------------EI 169
+E AIR GGLA KA IK IL+ + + L L+G+ D +
Sbjct: 286 DVEEAIRSGGLAKVKAGYIKAILQVVFDKNTDLLETLLKGVETDVPVPFVGKVLETKEQK 345
Query: 170 KAELSRFR-------------------------GIGPKTVACVLMFHLQQDDFPVDTHVF 204
+AE+ R GIG KT ACV +F L + F VDTHV+
Sbjct: 346 EAEIKSLRENMLSLDYVHTLDKPAAMRVLMDLPGIGVKTAACVALFCLGRPSFAVDTHVW 405
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKES 264
+GWVP A R++T+ H RIP LK+ L+ L HGK C C + + +
Sbjct: 406 RHCMWLGWVPEKASRDQTFSHCEVRIPDHLKYSLHQLFLRHGKTCGRC-RAATSEGSADW 464
Query: 265 AGNLCPL 271
+CP+
Sbjct: 465 ESTVCPI 471
>gi|255946089|ref|XP_002563812.1| Pc20g13320 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588547|emb|CAP86661.1| Pc20g13320 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 513
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 125/283 (44%), Gaps = 64/283 (22%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P RPTAEEC + L ++HG +T + GE
Sbjct: 172 PFPELVRPTAEECEAVNQLLSSVHGV---------------VTAPATIPEPSLTVTGCGE 216
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIEN 127
SVLD L++T+LS TT N+ KAF L F W+ V A K +
Sbjct: 217 VPSVLDALIRTLLSGATTGNNAAKAFGGLVQRFGILSEGIGKGSVNWDAVRQATVKDVFE 276
Query: 128 AIRCGGLAPTKAACIKNIL-------------------------KCLLESKGK------- 155
AI+ GGLA K+ +K IL K L E GK
Sbjct: 277 AIKSGGLADIKSKNLKAILDIVHKDNQARRASLLDSESKNDSVSKLLPEKAGKDKQYEIA 336
Query: 156 ------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKA 209
L L +L L+ +E +L ++ GIGPKT ACV++F LQ+ F VDTH+F + +
Sbjct: 337 CADQNFLSLNHLHNLTTEEAMTDLIKYPGIGPKTAACVILFCLQRPCFAVDTHIFRLCRW 396
Query: 210 IGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
+GW+P ++ + HL RIP LK+ L+ L HGK C C
Sbjct: 397 LGWIPARSNEVTAFSHLEVRIPDHLKYSLHQLFIRHGKTCPRC 439
>gi|46128543|ref|XP_388825.1| hypothetical protein FG08649.1 [Gibberella zeae PH-1]
Length = 486
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 140/312 (44%), Gaps = 66/312 (21%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P P+A++C + L +HG + N + L+++ GE
Sbjct: 173 PFPEWEAPSAKDCDEVYRRLAKIHG-------------EANAPEKIPAPSLEVSGC--GE 217
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIEN 127
SVLD L++T LS NT+ NS AF L STF T W V A I
Sbjct: 218 VPSVLDALIRTRLSANTSNRNSSAAFRGLVSTFGTVDKGIGKGSVDWNKVRTAPLPTIVE 277
Query: 128 AIRCGGLAPTKAACIKNILKCLLE-------------SKGK------------------- 155
+I+ GGL+ K IK IL+ + E S GK
Sbjct: 278 SIKTGGLSQVKGKDIKAILELVYEENTKRREAFLEEKSGGKATGITGAEGKTQGQKDLEI 337
Query: 156 -------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
L L+++ G+ DE L++F GIG KT +CV++F LQQ F VDTHV IS
Sbjct: 338 LKTDQEILSLDHIHGMVPDEAMQTLTKFPGIGVKTASCVILFCLQQPSFAVDTHVHRISG 397
Query: 209 AIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNL 268
+ W+P A R++T+ HL RIP LK+ L+ L HG+ C C + + +E +
Sbjct: 398 WLKWMPRKATRDQTFSHLEVRIPDHLKYGLHKLFVQHGRSCIRC-RANTSEGSEEWNKSE 456
Query: 269 CPLLNYCEKSNK 280
CPL E++ K
Sbjct: 457 CPLDELMERTGK 468
>gi|403178239|ref|XP_003336685.2| hypothetical protein PGTG_18481 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164069|gb|EFP92266.2| hypothetical protein PGTG_18481 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 424
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 131/259 (50%), Gaps = 18/259 (6%)
Query: 24 SRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE--GEEES 81
++PT EC+ + L +HG P R RL + L GE
Sbjct: 47 TKPTISECQQVCSLLAEVHGGMP----VRPARLAGATEEAEGVEDLASRTIATECGEVGE 102
Query: 82 VLDGLVKTVLSQNTTEANSLKAFASLKSTFPT--WEHVLAAEQKCIENAIRCG--GLAPT 137
VLDGLV+T+LSQ+T+ ANS +A +L F T + + A I ++ GLA
Sbjct: 103 VLDGLVRTILSQHTSRANSSRAKQALDQHFGTGNYHAIRRASVSSITAVLQDARVGLAAR 162
Query: 138 KAACIKNILKCL-LESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD 196
K+ I +L + L L LE+LR L E L+ F+G+G KT +CVL+F L ++
Sbjct: 163 KSTTIHALLNHIHLNLNPDLSLEFLRYLPDSEAMETLTSFKGVGAKTASCVLLFCLGRNF 222
Query: 197 FPVDTHVFEISKAIGWVP--TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIK 254
FPVDTHVF I+KA+GW+P A R + HLNQ +P LK+ L+ LL+ H + C C
Sbjct: 223 FPVDTHVFRITKALGWLPPRPTATRESAFKHLNQAVPDHLKYPLHILLFQHAQQCLVC-- 280
Query: 255 KGGNRQRKESAGNLCPLLN 273
R + + LCP N
Sbjct: 281 ---KRITSKPSQPLCPSKN 296
>gi|452988619|gb|EME88374.1| hypothetical protein MYCFIDRAFT_25275 [Pseudocercospora fijiensis
CIRAD86]
Length = 470
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 99/287 (34%), Positives = 130/287 (45%), Gaps = 69/287 (24%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPL-DMNEYDEG 77
PYP RPT EEC E V+ + KH N+VP ++ G
Sbjct: 139 PYPDFLRPTPEECE--------------EVVRILEK--KHGKVIVPNAVPPPSLDVAGCG 182
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E SVLD L++T LS NTT NS AF L + F T W+ V A +
Sbjct: 183 EVPSVLDALIRTRLSANTTNKNSSTAFQGLVARFGTLKEGIGKGSVDWDAVRRAPNHEVF 242
Query: 127 NAIRCGGLAPTKAACIKNILKCLLE-------------------------------SKGK 155
AI GGLA K+ I+ IL+ E +K K
Sbjct: 243 KAIERGGLAKIKSKDIQEILQMAYEENQERRSALTSPSGDPAGAEHEPESEKQEEIAKAK 302
Query: 156 ---LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGW 212
+ L++L LS +E ++ F GIGPKT +CV +F LQ+ F VDTHVF + + +GW
Sbjct: 303 QNVISLDHLHLLSTNEAIEKMLSFPGIGPKTASCVALFCLQRPSFAVDTHVFRLCQYLGW 362
Query: 213 VPTA-------ADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
VP + DRN TY H + RIP E K+ L+ LL HGK+C C
Sbjct: 363 VPKSVKKGEPKVDRNTTYSHCDARIPDEFKYPLHQLLIKHGKVCPRC 409
>gi|86605550|ref|YP_474313.1| base excision DNA repair protein [Synechococcus sp. JA-3-3Ab]
gi|86554092|gb|ABC99050.1| base excision DNA repair protein, HhH-GPD family [Synechococcus sp.
JA-3-3Ab]
Length = 222
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 115/198 (58%), Gaps = 12/198 (6%)
Query: 82 VLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAAC 141
+LD LV T+LSQNTT+ NS +AF +LK+ FP+WE VLAA+ + IR GGLA KAA
Sbjct: 31 LLDELVGTILSQNTTDHNSSRAFRALKAAFPSWEAVLAADPTKLAQVIRPGGLAQLKAAR 90
Query: 142 IKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
I+ IL +++ +G L L++LR L + A L +G+G KT ACVL+F L +D PVDT
Sbjct: 91 IQEILAAIVKRQGSLSLDFLRDLDDADALAYLLSLKGVGLKTAACVLLFGLGRDLCPVDT 150
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
HV ++ +G V A + T+ L+ RIP + L+ L GK +C+ + + G
Sbjct: 151 HVHRVANRLGLV-RARHPDDTFAQLSPRIPAGKAYSLHVNLIRLGKRICKARMPECGR-- 207
Query: 261 RKESAGNLCPLLNYCEKS 278
CPL + C +
Sbjct: 208 --------CPLRHECPSA 217
>gi|392561532|gb|EIW54713.1| DNA glycosylase [Trametes versicolor FP-101664 SS1]
Length = 307
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 121/247 (48%), Gaps = 34/247 (13%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-- 76
P+P + PT E + L A H P+ K + VP + N+
Sbjct: 21 PFPDYPHPTPTEAAEVHALLSATH---PDLAK-------------RPRVPSEANDSARTC 64
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKC--IENAIRCGGL 134
G +VL+ L+ T+LSQNT+ NS+ A L + F A+ K + AI+ GGL
Sbjct: 65 GSVPNVLESLIGTILSQNTSSRNSMAAKRGLDAAFGRNNFAAIADAKTADVVEAIKTGGL 124
Query: 135 APTKAACIKNILKCLLESKGKLCLEYLRGLSI-------------DEIKA-ELSRFRGIG 180
A KA I+ IL + G L++L G + DE EL + G+G
Sbjct: 125 ANKKAGVIQKILAEVHRRHGAYSLQHLAGADVKGKGKAAGGAPASDEAAMQELVSYDGVG 184
Query: 181 PKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNC 240
PKT +CVL+F L + FPVDTHVF +S+ +GWVP ADR HL+ IP +LK+ L+
Sbjct: 185 PKTASCVLLFCLGRSSFPVDTHVFRLSRLLGWVPQKADRVTAQAHLDLTIPDDLKYGLHV 244
Query: 241 LLYTHGK 247
L+ HG+
Sbjct: 245 LMVGHGR 251
>gi|403170480|ref|XP_003329823.2| hypothetical protein PGTG_11760 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168743|gb|EFP85404.2| hypothetical protein PGTG_11760 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 135/261 (51%), Gaps = 22/261 (8%)
Query: 24 SRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNE----YDEGEE 79
++PT +C+ + L +HG P R RL T + V D+ + GE
Sbjct: 45 AKPTISDCQQVCSLLAEVHGGMP----VRPARLA-GATEEAEGVE-DLASRTIATECGEV 98
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT--WEHVLAAEQKCIENAIRCG--GLA 135
VLDGLV+T+LSQ+T+ ANS +A +L F T + + A I ++ GLA
Sbjct: 99 GEVLDGLVRTILSQHTSRANSSRAKQALDQHFGTGNYHAIRRASVSSITAVLQDARVGLA 158
Query: 136 PTKAACIKNILKCL-LESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ 194
K+ I +L + L L LE+LR L E L+ F+G+G KT +CVL+F L +
Sbjct: 159 ARKSTTIHALLNHIHLNLNPDLSLEFLRYLPDSEAMETLTSFKGVGAKTASCVLLFCLGR 218
Query: 195 DDFPVDTHVFEISKAIGWVPTA--ADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
+ FPVDTHVF I+KA+GW+P A R + HLNQ +P LK+ L+ LL+ H + C C
Sbjct: 219 NFFPVDTHVFRITKALGWLPPGPTATRESAFKHLNQAVPDHLKYPLHILLFQHAQQCLVC 278
Query: 253 IKKGGNRQRKESAGNLCPLLN 273
R + + LCP N
Sbjct: 279 -----KRISSKPSHPLCPSKN 294
>gi|408388582|gb|EKJ68263.1| hypothetical protein FPSE_11566 [Fusarium pseudograminearum CS3096]
Length = 486
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 135/313 (43%), Gaps = 68/313 (21%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
P+P P+ E+C DE YR H +P E G
Sbjct: 173 PFPEWEAPSEEDC----DEA------------YRRLAKIHGEANAPEKIPAPSLEVSGCG 216
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E SVLD L++T LS NT+ NS AF L STF T W V A I
Sbjct: 217 EVPSVLDALIRTRLSANTSNRNSSAAFRGLVSTFGTIDKGIGKGSVDWNKVRTAPLPTIV 276
Query: 127 NAIRCGGLAPTKAACIKNILKCLLE-------------SKGK------------------ 155
+I+ GGL+ K IK IL+ + E S GK
Sbjct: 277 ESIKTGGLSQVKGKDIKTILELVYEENTKRREAFLEEKSGGKATGLTGAEGKTQGQKDLE 336
Query: 156 --------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEIS 207
L L+++ G+ DE L++F GIG KT +CV++F LQQ F VDTHV IS
Sbjct: 337 ILKTDQEILSLDHIHGMVPDEAMQTLTKFPGIGVKTASCVILFCLQQPSFAVDTHVHRIS 396
Query: 208 KAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
+ W+P A R++T+ HL RIP LK+ L+ L HG+ C C + + +E +
Sbjct: 397 GWLKWMPPKATRDQTFSHLEVRIPDHLKYGLHKLFVQHGRSCIRC-RANTSEGSEEWNKS 455
Query: 268 LCPLLNYCEKSNK 280
CPL E++ K
Sbjct: 456 ECPLDELMERTGK 468
>gi|425773861|gb|EKV12186.1| HhH-GPD family base excision DNA repair protein [Penicillium
digitatum PHI26]
gi|425782437|gb|EKV20346.1| HhH-GPD family base excision DNA repair protein [Penicillium
digitatum Pd1]
Length = 512
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 128/285 (44%), Gaps = 68/285 (23%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGF--PPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
P+P +RPTA EC + L ++HG PE + + ++
Sbjct: 171 PFPELARPTAGECEDVNQLLSSIHGVCNAPETIPEPS-----------------LSVTGC 213
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCI 125
GE SVLD L++T+LS TT N+ KAF L F W+ V A K +
Sbjct: 214 GEVPSVLDALIRTLLSGATTGNNAAKAFGGLVQRFGILSEGIGKGSVNWDAVRQATVKDV 273
Query: 126 ENAIRCGGLAPTKAACIKNIL-----------KCLLESKGK------------------- 155
AI+ GGLA K+ +K IL LL+S+ K
Sbjct: 274 FEAIKSGGLADVKSKNLKAILDIVHEDNQARRATLLDSESKIDSLSKLVPEKAETDKQYE 333
Query: 156 --------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEIS 207
L L +L LS +E L ++ GIGPKT ACV++F LQ+ F VDTH+F +
Sbjct: 334 IACADQNFLSLNHLHNLSTEEAMTNLIKYPGIGPKTAACVILFCLQRPCFAVDTHIFRLC 393
Query: 208 KAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
+ +GW+P A+ + HL R+P LK+ L+ L HGK C C
Sbjct: 394 RWLGWIPAHANEVTAFSHLEVRVPDYLKYSLHQLFIRHGKTCPRC 438
>gi|159898923|ref|YP_001545170.1| DNA-(apurinic or apyrimidinic site) lyase [Herpetosiphon
aurantiacus DSM 785]
gi|159891962|gb|ABX05042.1| DNA-(apurinic or apyrimidinic site) lyase [Herpetosiphon
aurantiacus DSM 785]
Length = 222
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 108/202 (53%), Gaps = 13/202 (6%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LD LV T+LSQNT++ NS +AF LK +PTW VL AE +E IR GGLA KAA I
Sbjct: 30 LDELVLTILSQNTSDRNSGRAFRELKGRYPTWAAVLNAESSELEETIRVGGLAKIKAARI 89
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+N L +LE +G+ L++LR L + E +A L+ GIGPKT CVL F Q VDTH
Sbjct: 90 QNTLAVILEQRGEFSLDFLRELGLHEARAWLTALPGIGPKTAGCVLCFACNQPAMIVDTH 149
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQR 261
+ ++K +G + + + L +P + + + + HG+ +C
Sbjct: 150 IHRVAKRVGMIGPKVSADAAHDLLESAVPVDQMYQFHVSVLLHGRQIC----------HA 199
Query: 262 KESAGNLCPLLNYCE--KSNKT 281
+ A CPL C+ ++N T
Sbjct: 200 QRPACERCPLTEICDFYQANST 221
>gi|303324187|ref|XP_003072081.1| HhH-GPD family base excision DNA repair protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240111791|gb|EER29936.1| HhH-GPD family base excision DNA repair protein [Coccidioides
posadasii C735 delta SOWgp]
gi|320037075|gb|EFW19013.1| helix-hairpin-helix domain-containing protein [Coccidioides
posadasii str. Silveira]
Length = 444
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 131/285 (45%), Gaps = 55/285 (19%)
Query: 4 SRKRKQVEVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRD 63
SR++ + ET P+P + PTAE+C + L +HG +
Sbjct: 138 SRRKARPVFNET---PFPEWAYPTAEQCEEVSRLLATVHG----------------EVKA 178
Query: 64 KNSVPL-DMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT--------- 113
++PL + GE SVLD L++T+LS TT NS AF L F
Sbjct: 179 PAAIPLPSLTISGCGEVPSVLDALIRTLLSGATTGNNSAMAFQGLVKKFGVLQDGVGKGS 238
Query: 114 --WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCL---------------------- 149
W V A + I +AI+ GGLA TK+ IK IL +
Sbjct: 239 VNWNKVREATVQEIRDAIKSGGLADTKSKHIKEILTMVYEQNIARRKDLVDAKQGGDETV 298
Query: 150 -LESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
L + L L+++ GLS DE E ++ GIG KT ACV++F L++ F VDTHVF + K
Sbjct: 299 HLSDEHMLSLDHMHGLSKDEAMQEFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFRLCK 358
Query: 209 AIGWVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
+GWVP + + HL R+P LK+ L+ L HGK C C
Sbjct: 359 WLGWVPPEKVNEITAFRHLEVRVPDHLKYSLHQLFIFHGKECPRC 403
>gi|392869327|gb|EAS27228.2| HhH-GPD family base excision DNA repair protein [Coccidioides
immitis RS]
Length = 444
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 130/285 (45%), Gaps = 55/285 (19%)
Query: 4 SRKRKQVEVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRD 63
SR++ + ET P+P + PTAE+C + L +HG +
Sbjct: 138 SRRKARPVFNET---PFPEWAYPTAEQCEEVSRLLATVHG----------------EVKA 178
Query: 64 KNSVPL-DMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT--------- 113
++PL + GE SVLD L++T LS TT NS AF L F
Sbjct: 179 PAAIPLPSLTISGCGEVPSVLDALIRTFLSGATTGNNSAMAFQGLVKKFGVLQDGVGKGS 238
Query: 114 --WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLE-------------------- 151
W V A + I +AI+ GGLA TK+ IK IL + E
Sbjct: 239 VNWNKVREAPVQEIRDAIKSGGLADTKSKHIKEILTMVFEQNIARRKDLVDAKQGGNETV 298
Query: 152 ---SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
+ L L+++ GLS DE E ++ GIG KT ACV++F L++ F VDTHVF + K
Sbjct: 299 HLSDEHMLSLDHMHGLSKDEAMQEFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFRLCK 358
Query: 209 AIGWVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
+GWVP + + HL R+P LK+ L+ L HGK C C
Sbjct: 359 WLGWVPPEKVNEITAFRHLEVRVPDHLKYSLHQLFIFHGKECPRC 403
>gi|119173285|ref|XP_001239121.1| hypothetical protein CIMG_10143 [Coccidioides immitis RS]
Length = 434
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 130/285 (45%), Gaps = 55/285 (19%)
Query: 4 SRKRKQVEVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRD 63
SR++ + ET P+P + PTAE+C + L +HG +
Sbjct: 128 SRRKARPVFNET---PFPEWAYPTAEQCEEVSRLLATVHG----------------EVKA 168
Query: 64 KNSVPL-DMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT--------- 113
++PL + GE SVLD L++T LS TT NS AF L F
Sbjct: 169 PAAIPLPSLTISGCGEVPSVLDALIRTFLSGATTGNNSAMAFQGLVKKFGVLQDGVGKGS 228
Query: 114 --WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLE-------------------- 151
W V A + I +AI+ GGLA TK+ IK IL + E
Sbjct: 229 VNWNKVREAPVQEIRDAIKSGGLADTKSKHIKEILTMVFEQNIARRKDLVDAKQGGNETV 288
Query: 152 ---SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
+ L L+++ GLS DE E ++ GIG KT ACV++F L++ F VDTHVF + K
Sbjct: 289 HLSDEHMLSLDHMHGLSKDEAMQEFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFRLCK 348
Query: 209 AIGWVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
+GWVP + + HL R+P LK+ L+ L HGK C C
Sbjct: 349 WLGWVPPEKVNEITAFRHLEVRVPDHLKYSLHQLFIFHGKECPRC 393
>gi|440638042|gb|ELR07961.1| hypothetical protein GMDG_02820 [Geomyces destructans 20631-21]
Length = 696
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 136/312 (43%), Gaps = 68/312 (21%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
PYP PT E C +++ L +HG + + K P + GE
Sbjct: 350 PYPDFLMPTLEACLEVKNLLSEVHGV---------------VEQPKAIPPPSLEVTGCGE 394
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIEN 127
SVLD L++T LS TT NS AFA L S F W V A+ K IE
Sbjct: 395 VPSVLDALIRTRLSAATTSTNSGYAFAGLVSKFGILKVGIGKGSVNWNKVREADVKDIEA 454
Query: 128 AIRCGGLAPTKAACIKNILKCL-------------------------------------- 149
AI+ GGL +K+ IK IL +
Sbjct: 455 AIKRGGLGKSKSIDIKKILDMVHDENIARREAFLKEKESGEKANVVGGESFKQGQKDMEI 514
Query: 150 -LESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
+ K L L+Y+ GL+ DE E +++ GIG KT +CV++F L++ F VDTH+F + +
Sbjct: 515 AVADKEILSLQYMHGLTPDEAMEEFTKYPGIGVKTASCVILFCLRRPSFAVDTHIFRLCR 574
Query: 209 AIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKES-AGN 267
+ W+P A R+ + H R+P E K+ L+ L HG+ C C + + E+
Sbjct: 575 WLKWIPEKATRDSAFSHCEVRVPNEYKYSLHQLFIRHGRTCGRC--RASTSETSEAWKET 632
Query: 268 LCPLLNYCEKSN 279
+CP+ + E++
Sbjct: 633 VCPIDHLVERTG 644
>gi|159122487|gb|EDP47608.1| conserved hypothetical protein [Aspergillus fumigatus A1163]
Length = 470
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 124/280 (44%), Gaps = 63/280 (22%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHG--FPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
P+P +RPT EEC + L + HG PP + + +
Sbjct: 153 PFPEWARPTPEECEEVNRLLSSAHGEVIPPSKIPEPS-----------------LTVTGC 195
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCI 125
GE SVLD L++T+LS TT NS AF L F W+ V A K +
Sbjct: 196 GEVPSVLDALIRTLLSGATTGRNSALAFGGLVQRFGILEEGIGKGSVNWDAVRQAPLKDV 255
Query: 126 ENAIRCGGLAPTKAACIKNILKCLL-------------ESKGK----------------- 155
AI+ GGLA K+ IK IL + ES G
Sbjct: 256 FEAIKRGGLAEIKSRKIKAILDMVYQENQERKEFLVKGESDGSSDLMPGEKEYEIACADQ 315
Query: 156 --LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWV 213
L L +L LS ++ EL ++ GIGPKT ACV++F LQ+ F VDTH+F I K +GWV
Sbjct: 316 NFLSLNHLHTLSTEDAMTELVKYPGIGPKTAACVILFCLQRPCFAVDTHIFRICKWLGWV 375
Query: 214 PTA-ADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
P A + HL RIP LK+ L+ LL HGK C C
Sbjct: 376 PPGKATEVTAFSHLEVRIPDHLKYSLHQLLIRHGKTCPRC 415
>gi|269792590|ref|YP_003317494.1| DNA-(apurinic or apyrimidinic site) lyase [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100225|gb|ACZ19212.1| DNA-(apurinic or apyrimidinic site) lyase [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 232
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 107/193 (55%), Gaps = 9/193 (4%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LDGL+ T+LSQNT + N +A+ +L++ FP+WE V+ A + +E AIR GL +KA I
Sbjct: 44 LDGLILTILSQNTNDVNRDRAYGNLRALFPSWESVMEAPVEDLEGAIRVAGLGASKARRI 103
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
K +L + E+ G L L +R DE++A LS G+GPKTVACVL+F L FPVDTH
Sbjct: 104 KEVLYKVKETLGTLSLGAMRSWRRDEVEAFLSTLPGVGPKTVACVLVFDLGIPAFPVDTH 163
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRK 262
V +S +G P + L L I E + L HG+ R C + ++
Sbjct: 164 VGRLSVRMGLAPGGMKPWEIQLRLESLIDPERYLGAHVNLIFHGR--RIC------KAQR 215
Query: 263 ESAGNLCPLLNYC 275
G+ CPLL C
Sbjct: 216 PRCGD-CPLLGTC 227
>gi|259480217|tpe|CBF71146.1| TPA: hypothetical base excision DNA repair protein (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 502
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 128/288 (44%), Gaps = 70/288 (24%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVP-LDMNEYDEG 77
P+P +RPT EEC + L ++HG E V ++P + G
Sbjct: 188 PFPDWARPTPEECEEVNRLLSSIHG---EIVA-------------PTTIPEPSLTVTGCG 231
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIE 126
E SVLD L++T+LS TT NS AF L F W+ V A K +
Sbjct: 232 EVPSVLDALIRTLLSGATTGNNSALAFNGLVQKFGILHDGIGKGSVNWDAVRRAPVKDVF 291
Query: 127 NAIRCGGLAPTKAACIKNILKCLLES---------KGK---------------------- 155
AI+ GGLA +K+ IK IL + + KG+
Sbjct: 292 EAIKSGGLADSKSKNIKAILDMVYKENQERRNILVKGQDTNSDSGKFVQQLNDKPEGEKQ 351
Query: 156 ----------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L L YL GL +E+ EL ++ GIGPKT ACVL+F LQ+ F VDTH+F
Sbjct: 352 YEIACADQNFLSLNYLHGLPTEEVMTELMKYPGIGPKTAACVLLFCLQRPCFAVDTHIFR 411
Query: 206 ISKAIGWVPTA-ADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
I K + WVP A + HL RIP LK+ L+ LL HGK C C
Sbjct: 412 ICKWLNWVPPDRATEITAFSHLEVRIPDHLKYPLHQLLIRHGKSCPRC 459
>gi|212526396|ref|XP_002143355.1| HhH-GPD family base excision DNA repair protein [Talaromyces
marneffei ATCC 18224]
gi|210072753|gb|EEA26840.1| HhH-GPD family base excision DNA repair protein [Talaromyces
marneffei ATCC 18224]
Length = 449
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 143/317 (45%), Gaps = 71/317 (22%)
Query: 18 DPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEG 77
P+P + PTA+EC + L + HG VK + + ++T G
Sbjct: 145 SPFPNFAHPTAKECEEVNRLLSSFHGE----VKAPTEIPQPSLTVTGC-----------G 189
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E SVLD L++TVLS TT ANS +AF L F W V A +
Sbjct: 190 EVPSVLDALIRTVLSGATTGANSARAFKGLVDKFGILETGIGKGSVDWNAVRVAPINEVF 249
Query: 127 NAIRCGGLAPTKAACIKNILKCLLE---------------------------SKGK---- 155
A++ GGLA TK+ IK IL + E SK +
Sbjct: 250 EAMKSGGLATTKSKYIKGILNMVYEENLARKAAHLKSEEEPGKPGPVGAEHESKAQKEVE 309
Query: 156 --------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEIS 207
L L+++ L +E EL ++ GIGPKT ACV++F LQ+ F VDTH+F I
Sbjct: 310 IALTDENVLSLDWIHALDKEEAMLELIKYPGIGPKTAACVVLFCLQRPCFAVDTHIFRIC 369
Query: 208 KAIGWVPTAADRNKT----YLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKE 263
K +GW+P++ + T + HL RIP LK+ L+ LL HGK C C G ++ E
Sbjct: 370 KWLGWLPSSDTKRVTEIMAFSHLEVRIPDHLKYPLHQLLIRHGKSCPRCRAITG--EKSE 427
Query: 264 SAGNLCPLLNYCEKSNK 280
N C + + +++ K
Sbjct: 428 GWENGCVIDHLVKRTGK 444
>gi|392407188|ref|YP_006443796.1| endoIII-related endonuclease [Anaerobaculum mobile DSM 13181]
gi|390620324|gb|AFM21471.1| putative endoIII-related endonuclease [Anaerobaculum mobile DSM
13181]
Length = 253
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 97/168 (57%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
E LDGL+ TVLSQNT + N +A+A LK+ FP W+ VLAA + I + IR GL+ KA
Sbjct: 54 EEPLDGLILTVLSQNTNDKNRDRAYALLKARFPRWDEVLAATHEEIASVIRPAGLSNVKA 113
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
IK ILK + + G L LR + +I LS G+GPKTVACVL+F L FPV
Sbjct: 114 MRIKEILKIVSDRFGDCSLRDLRRMKKGDIVEFLSSLPGVGPKTVACVLLFDLGLPAFPV 173
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
DTHV + K IGWV + + IP+EL + + L +HG+
Sbjct: 174 DTHVGRLCKRIGWVSAKCSPPEIQKIMESIIPEELYWSAHLDLISHGR 221
>gi|70984374|ref|XP_747701.1| HhH-GPD family base excision DNA repair protein [Aspergillus
fumigatus Af293]
gi|66845328|gb|EAL85663.1| HhH-GPD family base excision DNA repair protein [Aspergillus
fumigatus Af293]
Length = 470
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 124/280 (44%), Gaps = 63/280 (22%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHG--FPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
P+P +RPT EEC + L + HG PP + + +
Sbjct: 153 PFPEWARPTPEECEEVNRLLSSAHGEVIPPSKIPEPS-----------------LTVTGC 195
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCI 125
GE SVLD L++T+LS TT NS AF L F W+ V A K +
Sbjct: 196 GEVPSVLDALIRTLLSGATTGRNSALAFGGLVQRFGILEEGIGKGSVNWDAVRQAPLKDV 255
Query: 126 ENAIRCGGLAPTKAACIKNILKCLL-------------ESKGK----------------- 155
AI+ GGLA K+ IK IL + ES G
Sbjct: 256 FEAIKRGGLAEIKSRKIKAILDMVYQENQERKEFLVKGESDGSSDLMPGEKEYEIACADQ 315
Query: 156 --LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWV 213
L L +L LS ++ EL ++ GIGPKT ACV++F LQ+ F VDTH+F I K +GWV
Sbjct: 316 NFLSLNHLHTLSTEDAMTELVKYPGIGPKTAACVILFCLQRPCFAVDTHIFRICKWLGWV 375
Query: 214 PTA-ADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
P A + HL RIP LK+ L+ LL HGK C C
Sbjct: 376 PPGKATEVTAFSHLEVRIPDYLKYSLHQLLIRHGKTCPRC 415
>gi|67540934|ref|XP_664241.1| hypothetical protein AN6637.2 [Aspergillus nidulans FGSC A4]
gi|40738976|gb|EAA58166.1| hypothetical protein AN6637.2 [Aspergillus nidulans FGSC A4]
Length = 1085
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 128/288 (44%), Gaps = 70/288 (24%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVP-LDMNEYDEG 77
P+P +RPT EEC + L ++HG E V ++P + G
Sbjct: 771 PFPDWARPTPEECEEVNRLLSSIHG---EIVA-------------PTTIPEPSLTVTGCG 814
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIE 126
E SVLD L++T+LS TT NS AF L F W+ V A K +
Sbjct: 815 EVPSVLDALIRTLLSGATTGNNSALAFNGLVQKFGILHDGIGKGSVNWDAVRRAPVKDVF 874
Query: 127 NAIRCGGLAPTKAACIKNILKCLLES---------KGK---------------------- 155
AI+ GGLA +K+ IK IL + + KG+
Sbjct: 875 EAIKSGGLADSKSKNIKAILDMVYKENQERRNILVKGQDTNSDSGKFVQQLNDKPEGEKQ 934
Query: 156 ----------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L L YL GL +E+ EL ++ GIGPKT ACVL+F LQ+ F VDTH+F
Sbjct: 935 YEIACADQNFLSLNYLHGLPTEEVMTELMKYPGIGPKTAACVLLFCLQRPCFAVDTHIFR 994
Query: 206 ISKAIGWVPTA-ADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
I K + WVP A + HL RIP LK+ L+ LL HGK C C
Sbjct: 995 ICKWLNWVPPDRATEITAFSHLEVRIPDHLKYPLHQLLIRHGKSCPRC 1042
>gi|119467552|ref|XP_001257582.1| hypothetical protein NFIA_050280 [Neosartorya fischeri NRRL 181]
gi|119405734|gb|EAW15685.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
Length = 473
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 124/283 (43%), Gaps = 66/283 (23%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHG--FPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
P+P +RPT EEC + L + HG PP + + +
Sbjct: 153 PFPEWARPTPEECEEVNRLLSSAHGEVIPPTKIPEPS-----------------LTVTGC 195
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCI 125
GE SVLD L++T+LS TT NS AF L F W+ + A K +
Sbjct: 196 GEVPSVLDALIRTLLSGATTGRNSALAFGGLVQRFGILEEGIGKGSVNWDAIRQAPLKDV 255
Query: 126 ENAIRCGGLAPTKAACIKNILKCLL-------------ESKGK----------------- 155
AI+ GGLA K+ IK IL + ES G
Sbjct: 256 FEAIKRGGLADIKSKKIKAILDMVYQENQERKNILVKGESDGSSDLTANTEGEKEYEIAC 315
Query: 156 -----LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAI 210
L L +L LS ++ EL ++ GIGPKT ACV++F LQ+ F VDTH+F I K +
Sbjct: 316 ADQNFLSLNHLHTLSTEDAMTELVKYPGIGPKTAACVILFCLQRPCFAVDTHIFRICKWL 375
Query: 211 GWVPTA-ADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
GWVP A + HL RIP LK+ L+ LL HGK C C
Sbjct: 376 GWVPPGKATEVTAFSHLEVRIPDHLKYSLHQLLIRHGKTCPRC 418
>gi|121703826|ref|XP_001270177.1| helix-hairpin-helix motif protein [Aspergillus clavatus NRRL 1]
gi|119398321|gb|EAW08751.1| helix-hairpin-helix motif protein [Aspergillus clavatus NRRL 1]
Length = 465
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 124/281 (44%), Gaps = 62/281 (22%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P +PT EEC + L +HG K + L GE
Sbjct: 156 PFPEWIQPTPEECEEVNRLLSTVHGLVNPPTKIPDPSLTVTGC---------------GE 200
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIEN 127
SVLD L++T+LS TT NS AF+ L F W+ V A K +
Sbjct: 201 VPSVLDALIRTLLSGATTGRNSALAFSGLVERFGILEDGIGKGSVNWDAVRQAPLKDVFE 260
Query: 128 AIRCGGLAPTKAACIKNILKCL-----------------------LESKGK--------- 155
AI+ GGLA K+ +K IL + L+++G
Sbjct: 261 AIKRGGLADVKSKNLKAILDMVYEENQARRNILVEGEPGESANVKLKTEGAKEYEIACAD 320
Query: 156 ---LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGW 212
L L +L LS +E EL ++ GIGPKT ACVL+F LQ+ F VDTH+F ISK +GW
Sbjct: 321 QNFLSLNHLHHLSTEEAMTELVKYPGIGPKTAACVLLFCLQRPCFAVDTHIFRISKWLGW 380
Query: 213 VPTA-ADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
VP A + HL RIP LK+ L+ L HGK C C
Sbjct: 381 VPAGKATEVTAFSHLEVRIPDHLKYSLHQLFIRHGKTCPRC 421
>gi|134082233|emb|CAL00988.1| unnamed protein product [Aspergillus niger]
Length = 475
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 126/282 (44%), Gaps = 64/282 (22%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVP-LDMNEYDEG 77
P+P +RPT EEC + L +HG E V ++P + G
Sbjct: 162 PFPDWARPTPEECEEVNRLLSTVHG---EIVA-------------PTTIPEPSLTVTGCG 205
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E SVLD L++T+LS TT NS AF L F W+ V A K +
Sbjct: 206 EVPSVLDALIRTLLSGATTGNNSAMAFNGLVQRFGILKEGIGKGSVDWDAVRQAPLKDVF 265
Query: 127 NAIRCGGLAPTKAACIKNILKCLLES---------KGK---------------------- 155
AI+ GGLA K+ IK IL + E KG
Sbjct: 266 EAIKRGGLADIKSKKIKAILDMVYEENQQRRDMLLKGSRDAPQDLIKKSEGGKQYEIACA 325
Query: 156 ----LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIG 211
L L +L L+ ++ EL ++ GIGPKT ACVL+F LQ+ F VDTH+F I K +G
Sbjct: 326 DQHFLSLNHLHSLATEDAMVELVKYPGIGPKTAACVLLFCLQRPCFAVDTHIFRICKWLG 385
Query: 212 WVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
WVP+ A + HL RIP LK+ L+ LL HGK C C
Sbjct: 386 WVPSDKATEITAFSHLEVRIPDHLKYSLHQLLIRHGKSCPRC 427
>gi|317035622|ref|XP_001396714.2| HhH-GPD family base excision DNA repair protein [Aspergillus niger
CBS 513.88]
Length = 472
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 126/282 (44%), Gaps = 64/282 (22%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVP-LDMNEYDEG 77
P+P +RPT EEC + L +HG E V ++P + G
Sbjct: 159 PFPDWARPTPEECEEVNRLLSTVHG---EIVA-------------PTTIPEPSLTVTGCG 202
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E SVLD L++T+LS TT NS AF L F W+ V A K +
Sbjct: 203 EVPSVLDALIRTLLSGATTGNNSAMAFNGLVQRFGILKEGIGKGSVDWDAVRQAPLKDVF 262
Query: 127 NAIRCGGLAPTKAACIKNILKCLLES---------KGK---------------------- 155
AI+ GGLA K+ IK IL + E KG
Sbjct: 263 EAIKRGGLADIKSKKIKAILDMVYEENQQRRDMLLKGSRDAPQDLIKKSEGGKQYEIACA 322
Query: 156 ----LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIG 211
L L +L L+ ++ EL ++ GIGPKT ACVL+F LQ+ F VDTH+F I K +G
Sbjct: 323 DQHFLSLNHLHSLATEDAMVELVKYPGIGPKTAACVLLFCLQRPCFAVDTHIFRICKWLG 382
Query: 212 WVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
WVP+ A + HL RIP LK+ L+ LL HGK C C
Sbjct: 383 WVPSDKATEITAFSHLEVRIPDHLKYSLHQLLIRHGKSCPRC 424
>gi|350636184|gb|EHA24544.1| hypothetical protein ASPNIDRAFT_129349 [Aspergillus niger ATCC
1015]
Length = 1031
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 126/282 (44%), Gaps = 64/282 (22%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVP-LDMNEYDEG 77
P+P +RPT EEC + L +HG E V ++P + G
Sbjct: 731 PFPDWARPTPEECEEVNRLLSTVHG---EIVA-------------PTTIPEPSLTVTGCG 774
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E SVLD L++T+LS TT NS AF L F W+ V A K +
Sbjct: 775 EVPSVLDALIRTLLSGATTGNNSAMAFNGLVQRFGILKEGIGKGSVDWDAVRQAPLKDVF 834
Query: 127 NAIRCGGLAPTKAACIKNILKCLLES---------KGK---------------------- 155
AI+ GGLA K+ IK IL + E KG
Sbjct: 835 EAIKRGGLADIKSKKIKAILDMVYEENQQRRDMLLKGSRDAPQDLIKKSEGGKQYEIACA 894
Query: 156 ----LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIG 211
L L +L L+ ++ EL ++ GIGPKT ACVL+F LQ+ F VDTH+F I K +G
Sbjct: 895 DQHFLSLNHLHSLATEDAMVELVKYPGIGPKTAACVLLFCLQRPCFAVDTHIFRICKWLG 954
Query: 212 WVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
WVP+ A + HL RIP LK+ L+ LL HGK C C
Sbjct: 955 WVPSDKATEITAFSHLEVRIPDHLKYSLHQLLIRHGKSCPRC 996
>gi|359417776|ref|ZP_09209845.1| HhH-GPD family protein [Candidatus Haloredivivus sp. G17]
gi|358031869|gb|EHK00704.1| HhH-GPD family protein [Candidatus Haloredivivus sp. G17]
Length = 215
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF-PTWEHVLAAEQKCIENAIRCGGL 134
E E S +D +++T+LSQNT + N KAF LK + +E + A+++ + + IR GL
Sbjct: 23 EPSEMSGIDYVIETILSQNTNDINRDKAFNELKERYGDDFEEIRYADKEELIDTIRIAGL 82
Query: 135 APTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ 194
PTKA I+ L + E +G +E+L LS+DE K L+ GIGPKT + +L FH ++
Sbjct: 83 GPTKAERIQEALNIIYEEEGSYSVEFLDELSLDEGKKWLTDIPGIGPKTASVILGFHFKK 142
Query: 195 DDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
PVDTHV ++ G VP + R +T+ L +++P E+K+ + LL HG+
Sbjct: 143 PTIPVDTHVHRLANRYGLVPEGSSRKRTHDILEEKVPDEIKYSFHRLLIEHGR 195
>gi|86609598|ref|YP_478360.1| base excision DNA repair protein [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558140|gb|ABD03097.1| base excision DNA repair protein, HhH-GPD family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 212
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 111/200 (55%), Gaps = 12/200 (6%)
Query: 82 VLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAAC 141
+LD LV T+LSQNTT+ANS +AF +LK+ FP+WE VLAA+ + IR GGLA KAA
Sbjct: 23 LLDELVGTILSQNTTDANSSRAFRALKAAFPSWEAVLAADPADLAQVIRSGGLAHLKAAR 82
Query: 142 IKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
I+ IL + E +G L L++LR L L +G+G KT CVL+F L +D PVDT
Sbjct: 83 IQEILAAIQERQGSLSLDFLRDLDDAGALDFLLSLKGVGLKTATCVLLFGLGRDLCPVDT 142
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
HV ++ +G V A + T+ L+ +IP+ + L+ GK +C+ + + G
Sbjct: 143 HVHRVANRLGLV-RAKHPDDTFAQLSPQIPRGKAYSLHVNFVRLGKRICKARMPECGR-- 199
Query: 261 RKESAGNLCPLLNYCEKSNK 280
CPL C +
Sbjct: 200 --------CPLRPTCPSGRQ 211
>gi|424811992|ref|ZP_18237232.1| putative EndoIII-related endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756214|gb|EGQ39797.1| putative EndoIII-related endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
Length = 219
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 106/178 (59%), Gaps = 4/178 (2%)
Query: 74 YDEGEEESVLDG---LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIR 130
Y++ E DG LV+T+LSQNTT+ + KA+ +L++ + +W V A + + + +R
Sbjct: 18 YEKPERPETADGVEVLVETILSQNTTDVSRDKAYRNLQNRYDSWREVEEAPEGELTDVVR 77
Query: 131 CGGLAPTKAACIKNILKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
GL PTKA I+ L+ + E + G +++L +S ++ K L G+GPKT A VL
Sbjct: 78 VAGLGPTKAERIQKALELVREETGGDYSVDFLDEMSTEDAKEWLESLPGVGPKTAAIVLC 137
Query: 190 FHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
FH+ + FPVDTHV +SK G VP R KT+ + +++P ELK+ ++ L+ HG+
Sbjct: 138 FHMGRAVFPVDTHVHRLSKRWGIVPENTSRKKTHRIMERKVPDELKYTMHILMIRHGR 195
>gi|258570499|ref|XP_002544053.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904323|gb|EEP78724.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1143
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 125/273 (45%), Gaps = 53/273 (19%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPL-DMNEYD 75
+ P+P PT E+C + L ++HG + ++PL +
Sbjct: 154 ETPFPDWEYPTVEQCEEVSRLLSSIHG----------------EVKAPETIPLPSLTISG 197
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKC 124
GE SVLD L++T+LS TT NS AF L F W V A
Sbjct: 198 CGEVPSVLDALIRTLLSGATTGNNSAMAFQGLVKRFGVLQDGVGKGSVDWNKVRHAPVGE 257
Query: 125 IENAIRCGGLAPTKAACIKNILKCL----------LESKGK--------------LCLEY 160
I +AI+ GGLA K+ IK IL + L++ GK L L+Y
Sbjct: 258 IRDAIKSGGLADIKSKHIKEILTMVYEENIARRNELQTDGKAKHGNRVDHADEHMLSLDY 317
Query: 161 LRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPT-AADR 219
+ LS DE ++ GIG KT ACV++F L++ F VDTHVF +SK +GW+P+ +
Sbjct: 318 MHALSKDEAMQRFIKYPGIGVKTAACVVLFCLRRPCFAVDTHVFRLSKWLGWIPSEKVNE 377
Query: 220 NKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
+ HL R+P LK+ L+ L HGK C C
Sbjct: 378 ITAFRHLEVRVPDHLKYSLHQLFIFHGKECPRC 410
>gi|302410315|ref|XP_003002991.1| base excision DNA repair protein [Verticillium albo-atrum VaMs.102]
gi|261358015|gb|EEY20443.1| base excision DNA repair protein [Verticillium albo-atrum VaMs.102]
Length = 327
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 101/194 (52%), Gaps = 28/194 (14%)
Query: 92 SQNTTEANSLKAFA--SLKSTFPTWEHVLAAEQKCIE----------------------- 126
S N +A LKAF S KS FP + H A E K
Sbjct: 99 SPNALQAKKLKAFDQFSAKSPFPDFAHPTAEEAKLAHRILTLAARRRARGPTRSEAPTLR 158
Query: 127 --NAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTV 184
AI+CGGLA K+ I IL+ G L+++ + +E EL F+G+GPKT
Sbjct: 159 APEAIKCGGLAAVKSKVILGILEQAKARYGAYSLDHMFDKTDEEAMRELIGFQGVGPKTA 218
Query: 185 ACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYT 244
+CVL+F L+++ F VDTHV+ I+ +GW P A R++TY HL+ RIP E K+ L+ LL
Sbjct: 219 SCVLLFCLRRESFAVDTHVWRITGLLGWRPKTASRDETYAHLDVRIPDEDKYGLHILLVK 278
Query: 245 HGKLCRNCIKKGGN 258
HGK+C C K GG
Sbjct: 279 HGKVCDEC-KAGGK 291
>gi|193215044|ref|YP_001996243.1| HhH-GPD family protein [Chloroherpeton thalassium ATCC 35110]
gi|193088521|gb|ACF13796.1| HhH-GPD family protein [Chloroherpeton thalassium ATCC 35110]
Length = 227
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 113/209 (54%), Gaps = 9/209 (4%)
Query: 58 HNMTRDKNSV---PLDMNEYDEGE---EESVLDGLVKTVLSQNTTEANSLKAFASLKSTF 111
H +TR S+ P E EG + ++LD LV T+LSQNT + NS +AFASLKS F
Sbjct: 7 HELTRQLESIYGEPAARREEAEGSNCFQSTLLDELVGTILSQNTNDRNSSRAFASLKSEF 66
Query: 112 PTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKA 171
P W +L A I +I GGLA KA IK IL+ L+ ++G L L++L S +
Sbjct: 67 PEWAILLDAPVAEIAKSIEIGGLANQKAQRIKAILQELVRTQGALSLDFLADFSDKAVLE 126
Query: 172 ELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
L+ F+G+G KT CVL+F L +D PVDTH+ I +G T ++T+ L IP
Sbjct: 127 FLTSFKGVGVKTAGCVLLFGLGRDVCPVDTHIHRILNRLGIFST-KHADETFAELQPHIP 185
Query: 232 KELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
+ L+ L HGK R C + N Q
Sbjct: 186 TGKAYSLHVNLIRHGK--RVCCARKPNCQ 212
>gi|380484040|emb|CCF40248.1| base excision DNA repair protein [Colletotrichum higginsianum]
Length = 361
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 22/246 (8%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
PYP RPT EECR D L LHG ++ R+ + P + E
Sbjct: 111 PYPDFPRPTPEECRTAHDILERLHG---------------DVVRENFADP----DAPSLE 151
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT---WEHVLAAEQKCIENAIRCGGLA 135
V+D V LSQ T+ AN+ +A ++K+ + + +E ++ + +A+R GG+
Sbjct: 152 YPYVMDAXVVAALSQATSWANAKRAMKNMKAVYGSTFNYEAIVEGGMDKLVDALRPGGMQ 211
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA + +L + E GK L++L S +E E+ + G+GPK C+L L++D
Sbjct: 212 NRKAKILMRLLHDVKERHGKWDLQHLFNASDEEAVKEVVSYWGLGPKCAFCLLSICLKRD 271
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
F VDTH++ I+ GW P A + HL+ RIP E+K+ L+ HG+ C C
Sbjct: 272 AFAVDTHIYRITGLWGWRPKDASKELAQAHLDARIPNEIKYALHYQFIVHGRQCPACRGN 331
Query: 256 GGNRQR 261
G ++ R
Sbjct: 332 GDSKAR 337
>gi|425773936|gb|EKV12261.1| Base excision DNA repair protein [Penicillium digitatum PHI26]
gi|425782386|gb|EKV20298.1| Base excision DNA repair protein [Penicillium digitatum Pd1]
Length = 307
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 116/246 (47%), Gaps = 27/246 (10%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P RP+ +EC+ L A HG RD N+ D D +
Sbjct: 61 PFPNFQRPSPQECQEAHRILTASHG-----------------ERDPNAT--DAMNADGLD 101
Query: 79 EESV----LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKC---IENAIRC 131
+V LDGLV +L Q T E N+++ S+ + +W A + ++N + C
Sbjct: 102 RPTVFPDPLDGLVYAILCQATNERNAIRQVQSMIGEYGSWTDYNAISKGGETKLQNVLSC 161
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GGL KA I +IL+ + L +L L +++ E + G+GPKT +CVL
Sbjct: 162 GGLHIRKAKFIMSILRQVKARHDAYTLNHLWPLDDEQVMEEFLSYNGVGPKTASCVLALT 221
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
L + F VDTH++ I+ +GW P A + HL +IP E K+ L+ L THG+ C
Sbjct: 222 LNRQRFVVDTHIYRITGFLGWRPLHATPEQARAHLETKIPDEFKYSLHLLFITHGRECPE 281
Query: 252 CIKKGG 257
C K GG
Sbjct: 282 C-KAGG 286
>gi|327309186|ref|XP_003239284.1| HhH-GPD family base excision DNA repair protein [Trichophyton
rubrum CBS 118892]
gi|326459540|gb|EGD84993.1| HhH-GPD family base excision DNA repair protein [Trichophyton
rubrum CBS 118892]
Length = 467
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 124/287 (43%), Gaps = 68/287 (23%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P RPT EC + L ++HG + K P + GE
Sbjct: 151 PFPDWKRPTVAECEEVNRLLSSIHG---------------EVIAPKAIPPPSLTVSGCGE 195
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIEN 127
S+LD L++T+LS TT NS AF L F W V A + I
Sbjct: 196 VPSILDALIRTLLSGATTGNNSAMAFQGLVRKFGILKEGIGKGSVDWNKVREAPVEDIYE 255
Query: 128 AIRCGGLAPTKAACIKNILK-----------CLLESK-GK-------------------- 155
+++CGGL K+ IK IL+ L+ESK GK
Sbjct: 256 SMKCGGLGVAKSKYIKQILEMVYEENKARRDALVESKTGKELDLTRAPGFRNETEEQKDN 315
Query: 156 ---------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEI 206
L L +L LS DE E ++ GIG KT ACV++F LQ+ F VDTHVF +
Sbjct: 316 EIAMTNENVLSLNHLHSLSKDEAMLEFVKYPGIGVKTAACVVLFCLQRPCFAVDTHVFRL 375
Query: 207 SKAIGWVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
SK +GW+PT + + HL +IP LK+ L+ L HGK C C
Sbjct: 376 SKWLGWIPTDKVNEITAFSHLEVKIPDHLKYSLHQLFILHGKACPRC 422
>gi|315053601|ref|XP_003176175.1| hypothetical protein MGYG_00265 [Arthroderma gypseum CBS 118893]
gi|311338021|gb|EFQ97223.1| hypothetical protein MGYG_00265 [Arthroderma gypseum CBS 118893]
Length = 712
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 123/287 (42%), Gaps = 68/287 (23%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P PT EEC + L + HG + K P + GE
Sbjct: 150 PFPDWQHPTIEECEEVNRLLSSAHG---------------KIIAPKAIPPPSLTVSGCGE 194
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIEN 127
S+LD L++T+LS TT NS AF L F W V A + I
Sbjct: 195 VPSILDALIRTLLSGATTGNNSAMAFQGLVRKFGILNEGIGKGSVNWNKVREAPVEDIYE 254
Query: 128 AIRCGGLAPTKAACIKNILK-----------CLLESK-GK-------------------- 155
A++CGGL K+ IK IL+ L+ESK GK
Sbjct: 255 AMKCGGLGVAKSKYIKQILEMVYTENRTRRDALVESKSGKHLDLTQAPGSVKKTEEQKDN 314
Query: 156 ---------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEI 206
L L +L LS DE E ++ GIG KT ACV++F LQ+ F VDTHVF +
Sbjct: 315 EIAMADENVLSLNHLHSLSKDEAMLEFVKYPGIGVKTAACVVLFCLQRPCFAVDTHVFRL 374
Query: 207 SKAIGWVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
SK +GW+P+ + + HL RIP LK+ L+ L HGK C C
Sbjct: 375 SKWLGWIPSDKVNEITAFSHLEVRIPDNLKYSLHQLFIHHGKACPRC 421
>gi|358374017|dbj|GAA90612.1| HhH-GPD family base excision DNA repair protein [Aspergillus
kawachii IFO 4308]
Length = 458
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 124/282 (43%), Gaps = 64/282 (22%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVP-LDMNEYDEG 77
P+P + PT +EC + L +HG E V ++P + G
Sbjct: 146 PFPDWAHPTTDECEEVNRLLSTVHG---EIVA-------------PTTIPEPSLTVTGCG 189
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E SVLD L++T+LS TT NS AF L F W+ V A K +
Sbjct: 190 EVPSVLDALIRTLLSGATTGNNSAMAFNGLVQRFGILKEGVGKGSVDWDAVRRAPLKDVF 249
Query: 127 NAIRCGGLAPTKAACIKNILKCLLES---------KGK---------------------- 155
AI+ GGLA K+ IK IL + E KG
Sbjct: 250 EAIKRGGLADVKSKKIKAILDMVYEENQQRRDMLLKGSQDAPQDLLTKSEGGKQYEIACA 309
Query: 156 ----LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIG 211
L L +L L+ ++ EL ++ GIGPKT ACVL+F LQ+ F VDTH+F I K +G
Sbjct: 310 DQNFLSLNHLHSLATEDAMVELVKYPGIGPKTAACVLLFCLQRPCFAVDTHIFRICKWLG 369
Query: 212 WV-PTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
WV P A + HL RIP LK+ L+ LL HGK C C
Sbjct: 370 WVPPDKATEITAFSHLEVRIPDHLKYSLHQLLIRHGKSCPRC 411
>gi|302890387|ref|XP_003044078.1| hypothetical protein NECHADRAFT_5986 [Nectria haematococca mpVI
77-13-4]
gi|256724997|gb|EEU38365.1| hypothetical protein NECHADRAFT_5986 [Nectria haematococca mpVI
77-13-4]
Length = 243
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 121/249 (48%), Gaps = 23/249 (9%)
Query: 15 TRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
T+ P+P RPT EC+ D L LHG + R+ + P E
Sbjct: 3 TKSSPFPDFLRPTPRECKTAHDILEGLHG---------------DAVREVFTAPDAPCE- 46
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT---WEHVLAAEQKCIENAIRC 131
+ +D LV LSQ T+ +N+ +A S+K + + + ++ + +A+R
Sbjct: 47 ---DYPYAMDALVVAALSQATSWSNATRAMQSMKEIYGSPFAYSSIVKGGNDKLVDALRP 103
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYL-RGLSIDEIKAELSRFRGIGPKTVACVLMF 190
GG+ KA + +LK + GK L++L DE+ E+++F GIGPK C+L
Sbjct: 104 GGMQNRKAKILMTLLKDVEAKYGKWDLQHLFTKTDDDEVIDEVTKFWGIGPKCAHCLLSI 163
Query: 191 HLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCR 250
L++D F VDTH++ +S GW P A + HL+ RIP ELKF L+ L+ +HG C
Sbjct: 164 CLKRDVFAVDTHIYRLSGLWGWRPAKATKLTAQAHLDARIPNELKFPLHYLMISHGSSCP 223
Query: 251 NCIKKGGNR 259
C G R
Sbjct: 224 KCRGNGNPR 232
>gi|398399341|ref|XP_003853090.1| hypothetical protein MYCGRDRAFT_40778 [Zymoseptoria tritici IPO323]
gi|339472972|gb|EGP88066.1| hypothetical protein MYCGRDRAFT_40778 [Zymoseptoria tritici IPO323]
Length = 484
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 126/305 (41%), Gaps = 69/305 (22%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
PYP + RPT EEC + L LHG L+ GE
Sbjct: 148 PYPNYPRPTPEECHEVVRILEKLHGKVNVPKVVPPPSLEVAGC---------------GE 192
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIEN 127
SVLD L++T LS NTT NS AF L F T W+ V A +
Sbjct: 193 VPSVLDALIRTRLSANTTNKNSSTAFQGLVKRFGTLKEGVGKGSVDWDAVRTASNHDVFK 252
Query: 128 AIRCGGLAPTKAACIKNILKCLLES----------------------------------K 153
AI GGLA K+ I++IL+ E +
Sbjct: 253 AIERGGLAKIKSKDIQSILQIAYEENQERKAALTGSAEDPAGAEHAQESEKQDEIEKAEQ 312
Query: 154 GKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWV 213
+ L++L LS D+ ++ F GIG KT +CV +F + F VDTHVF + + +GWV
Sbjct: 313 NVISLDHLHLLSRDDAIRKMVEFPGIGLKTASCVALFCMGHASFAVDTHVFRLCQYLGWV 372
Query: 214 PTA-------ADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAG 266
P + DR+ T+ H + RIP ELK+ L+ LL HGK C C G G
Sbjct: 373 PKSTKKGEPKVDRDTTFSHCDVRIPDELKYALHQLLIKHGKTCPRCRAATGQSSANWEEG 432
Query: 267 NLCPL 271
CP+
Sbjct: 433 --CPI 435
>gi|374850043|dbj|BAL53042.1| HhH-GPD family protein [uncultured Chloroflexi bacterium]
Length = 235
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 11/195 (5%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LD LV T+LSQNT + N +AF +L++ FPTWE V A + AIR GLA KA +
Sbjct: 39 LDELVSTILSQNTNDLNRDRAFDALRARFPTWEAVRDAPLDEVIEAIRLAGLAQQKAPRL 98
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ +L+ + + +G L L++L L ++E + L +F+G+GPKT A VL+F L + FPVDTH
Sbjct: 99 QQVLREITQQRGALELDFLADLPLEEARRWLMQFKGVGPKTAAIVLLFSLGRPAFPVDTH 158
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQR 261
++ +S IG P + + L P E + ++ L G+ +C Q
Sbjct: 159 IYRVSGRIGLRPARMSVEEAHAFLEALFPPETYYAVHLNLIRLGREVC----------QA 208
Query: 262 KESAGNLCPLLNYCE 276
+ CP+ +C+
Sbjct: 209 RRPQCERCPIREWCD 223
>gi|326469311|gb|EGD93320.1| HhH-GPD family base excision DNA repair protein [Trichophyton
tonsurans CBS 112818]
gi|326483423|gb|EGE07433.1| HhH-GPD superfamily base excision DNA repair protein [Trichophyton
equinum CBS 127.97]
Length = 478
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 123/287 (42%), Gaps = 68/287 (23%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P RPT EC + L ++HG + K P + GE
Sbjct: 150 PFPDWKRPTVVECEEVNRLLSSVHG---------------EVRAPKAIPPPSLTVSGCGE 194
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIEN 127
S+LD L++T+LS TT NS AF L F W V A + I
Sbjct: 195 VPSILDALIRTLLSGATTGNNSAMAFQGLVRKFGILKEGIGKGSVDWNKVREAPVEDIYE 254
Query: 128 AIRCGGLAPTKAACIKNILK-----------CLLESK-GK-------------------- 155
A++CGGL K+ IK IL+ L+ESK GK
Sbjct: 255 AMKCGGLGVAKSKYIKQILEMVYEENKARRDALIESKTGKNLDLTRAPGSINETEEQKDN 314
Query: 156 ---------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEI 206
L L +L LS DE E ++ GIG KT ACV++F LQ+ F VDTHVF +
Sbjct: 315 EIAMTNEHVLSLNHLHSLSKDEAMLEFVKYPGIGVKTAACVVLFCLQRPCFAVDTHVFRL 374
Query: 207 SKAIGWVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
SK +GW+P + + HL +IP LK+ L+ L HGK C C
Sbjct: 375 SKWLGWIPPDKVNEITAFSHLEVKIPDHLKYSLHQLFIRHGKACPRC 421
>gi|302654297|ref|XP_003018956.1| hypothetical protein TRV_06967 [Trichophyton verrucosum HKI 0517]
gi|291182646|gb|EFE38311.1| hypothetical protein TRV_06967 [Trichophyton verrucosum HKI 0517]
Length = 473
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 125/287 (43%), Gaps = 68/287 (23%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P RPT EC I L ++HG E + K P + GE
Sbjct: 150 PFPGWKRPTVAECEEINRLLSSVHG---EVIAL------------KAIPPPSLTVSGCGE 194
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIEN 127
S+LD L++T+LS TT NS AF L F W V A + I
Sbjct: 195 VPSILDALIRTLLSGATTGNNSAMAFQGLVRKFGILKKGIGKGSVDWNKVREAPVEDIYE 254
Query: 128 AIRCGGLAPTKAACIKNILK-----------CLLESK-GK-------------------- 155
A++CGGL K+ IK IL+ L+ESK G+
Sbjct: 255 AMKCGGLGVAKSKYIKQILEMVYEENKARRDALVESKTGREIDLTRAPGSINETEEQKDN 314
Query: 156 ---------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEI 206
L L +L LS DE E ++ GIG KT ACV++F LQ+ F VDTH+F +
Sbjct: 315 EIAMANENVLSLNHLHSLSKDEAMLEFVKYPGIGVKTAACVVLFCLQRPCFAVDTHIFRL 374
Query: 207 SKAIGWVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
SK +GW+P+ + + HL +IP LK+ L+ L HGK C C
Sbjct: 375 SKWLGWIPSDKVNEITAFSHLEVKIPDHLKYSLHQLFIRHGKACPRC 421
>gi|302504713|ref|XP_003014315.1| hypothetical protein ARB_07622 [Arthroderma benhamiae CBS 112371]
gi|291177883|gb|EFE33675.1| hypothetical protein ARB_07622 [Arthroderma benhamiae CBS 112371]
Length = 475
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 122/287 (42%), Gaps = 68/287 (23%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P PT EC I L ++HG + K P + GE
Sbjct: 150 PFPDWKHPTVAECEEINRLLSSVHG---------------EVIAPKAIPPPSLTVSGCGE 194
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIEN 127
S+LD L++T+LS TT NS AF L F W V A + I
Sbjct: 195 VPSILDALIRTLLSGATTGNNSAMAFQGLVRKFGILKEGIGKGSVDWNKVREAPVEDIYK 254
Query: 128 AIRCGGLAPTKAACIKNILK-----------CLLESK-GK-------------------- 155
A++CGGL K+ IK IL+ L+ESK GK
Sbjct: 255 AMKCGGLGVAKSKYIKQILEMVYEENKARRDALVESKTGKEIDLTRAPGSINETEEQKDN 314
Query: 156 ---------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEI 206
L L +L LS DE E ++ GIG KT ACV++F LQ+ F VDTHVF +
Sbjct: 315 EITMANENVLSLNHLHSLSKDEAMLEFVKYPGIGVKTAACVILFCLQRPCFAVDTHVFRL 374
Query: 207 SKAIGWVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
SK +GW+P + + HL +IP LK+ L+ L HGK C C
Sbjct: 375 SKWLGWIPPDKVNEITAFSHLEVKIPDHLKYSLHQLFIRHGKACPRC 421
>gi|156055880|ref|XP_001593864.1| hypothetical protein SS1G_05292 [Sclerotinia sclerotiorum 1980]
gi|154703076|gb|EDO02815.1| hypothetical protein SS1G_05292 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 551
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 122/288 (42%), Gaps = 69/288 (23%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGF--PPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
Q P+P H PT E + L ALHG PP+ V ++ +
Sbjct: 183 QTPFPDHVSPTILEAEAVNSLLTALHGEVKPPDTVPAPSETVTGC--------------- 227
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQK 123
GE LD ++T+LS T N+ K+ A LK F +WE V AA ++
Sbjct: 228 --GEVPDALDATLRTLLSAATAAGNANKSMAGLKERFGLRTSGKGAGSVSWEAVFAAPEE 285
Query: 124 CIENAIRCGGLAPTKAACIKNILKCL---------------------------LESKGK- 155
+ AI+ GGLA K + IK ILK + LE+K +
Sbjct: 286 DVVKAIKSGGLANVKGSNIKKILKKVYDQNTELLEILLKEVDTDVSVPFIGKVLETKEQK 345
Query: 156 -----------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L ++Y+ L L GIG KT ACV +F L + F VDTHV+
Sbjct: 346 EAEIKSLGENMLSIDYIHALDKPAAMDVLMDLPGIGVKTAACVALFCLGRPSFAVDTHVW 405
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
K +GWVP A R++T+ H RIP LK+ L+ L HGK C C
Sbjct: 406 RHCKWLGWVPEGATRDQTFSHCEVRIPDHLKYSLHQLFLRHGKTCGRC 453
>gi|289523004|ref|ZP_06439858.1| endonuclease III [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503547|gb|EFD24711.1| endonuclease III [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 255
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 96/165 (58%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LDGL+ T+LSQNT + N +A+ L+S P WE VL + + I+ GL+ KA+ I
Sbjct: 57 LDGLILTILSQNTNDKNRDRAYEFLRSRSPRWEDVLVTAETELAEVIKPAGLSNIKASRI 116
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
K++L + E G L+ L+G+ +EI LS G+GPKTVACVL+F L FPVDTH
Sbjct: 117 KSVLGLITERFGSCSLKPLKGMKKEEIIDFLSSLPGVGPKTVACVLLFDLGIPAFPVDTH 176
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
V + K IGWV + +T + IP +L + + + +HG+
Sbjct: 177 VNRLCKRIGWVSPKSTPEETQKIMGSVIPSDLYWSAHLDIISHGR 221
>gi|294102031|ref|YP_003553889.1| DNA-(apurinic or apyrimidinic site) lyase [Aminobacterium
colombiense DSM 12261]
gi|293617011|gb|ADE57165.1| DNA-(apurinic or apyrimidinic site) lyase [Aminobacterium
colombiense DSM 12261]
Length = 233
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 104/193 (53%), Gaps = 3/193 (1%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
E LDGL+ T+LSQNT + N +A+ SL+ +PTWE V A+ + I+ AIR GL+ K+
Sbjct: 38 EEPLDGLILTLLSQNTNDRNRDRAYESLRQLYPTWEEVAQADTERIKEAIRVAGLSDIKS 97
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
IK IL + ++ G ++ LR ++ +A L + G+G KTVACVL+F L FPV
Sbjct: 98 KRIKEILVAVQDAFGSYSIKELRKRGREQARAFLFKLPGVGAKTVACVLLFDLGYPAFPV 157
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNR 259
DTH+ SK IGW + L Q +P+E + + THG RN R
Sbjct: 158 DTHIHRFSKRIGWAHDRCKPEEIEGMLEQVVPEERYLGGHINIITHG---RNICLARQPR 214
Query: 260 QRKESAGNLCPLL 272
K S +LC +
Sbjct: 215 CDKCSVNDLCAFV 227
>gi|346976316|gb|EGY19768.1| HhH-GPD family base excision DNA repair protein [Verticillium
dahliae VdLs.17]
Length = 543
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 129/290 (44%), Gaps = 72/290 (24%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGF--PPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
Q P+P P+ E+C + L LHG PP+ + + +
Sbjct: 204 QTPFPDWPAPSPEDCVEVHRILTELHGAFTPPDKIPAPSTSVAGC--------------- 248
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWE------------HVLAAEQ 122
GE ++D L++T++S +T+ N+ A + + + W+ V +E+
Sbjct: 249 --GEVPDIVDALIRTLISGHTSMQNANLAIQDVTAKYGQWDADSIGAGSIAWNKVRLSEE 306
Query: 123 KCIENAIRCGGLAPTKAACIKNILKCL--------------------------------- 149
+ +A++ GL PTK IK+IL +
Sbjct: 307 SEVVDAVKRAGLGPTKGRDIKSILDMVHRDNQVRLAAYIKERETGEMADILGAQNLTQGQ 366
Query: 150 -------LESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ES G L L+++RGL+ DE E +++ GIG KT +C+++F LQQ F VDTH
Sbjct: 367 KDHQVKKMES-GILTLDHVRGLTSDEAMLEFTKYPGIGVKTSSCLILFCLQQPSFAVDTH 425
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
V+ K + WVP A R+ TY+H RIP LK+ L+ L HGK C C
Sbjct: 426 VWRFCKWLKWVPPKASRDDTYMHGEVRIPDTLKYGLHQLFIRHGKECGRC 475
>gi|296814514|ref|XP_002847594.1| helix-hairpin-helix domain-containing protein [Arthroderma otae CBS
113480]
gi|238840619|gb|EEQ30281.1| helix-hairpin-helix domain-containing protein [Arthroderma otae CBS
113480]
Length = 481
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 125/289 (43%), Gaps = 69/289 (23%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
++PY PT EEC + L ++HG + K P +
Sbjct: 148 RNPY-GWQHPTIEECEKVNRLLSSVHG---------------EVIAPKAVPPPSLTVSGC 191
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCI 125
GE S+LD L++T+LS TT NS AF L F W V A + I
Sbjct: 192 GEVPSILDALIRTLLSGATTGNNSAMAFQGLVRRFGILNEGIGKGSVDWNKVRGAPVEDI 251
Query: 126 ENAIRCGGLAPTKAACIKNILK-----------CLLESK-GK------------------ 155
A++CGGL K+ IK IL+ L+ES+ GK
Sbjct: 252 YEAMKCGGLGVAKSNYIKQILEMVYTENKARRDALVESRNGKDLDLKRVPGLINETEKQK 311
Query: 156 -----------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L L +L LS DE E ++ GIG KT ACV++F LQ+ F VDTHVF
Sbjct: 312 ENEIALANEHVLSLNHLHSLSKDEAMLEFVKYPGIGVKTAACVILFCLQRPCFAVDTHVF 371
Query: 205 EISKAIGWVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
+SK +GWVP A+ + HL R+P LK+ L+ L HGK C C
Sbjct: 372 RLSKWLGWVPPEKANEITAFSHLEVRVPDNLKYSLHQLFIRHGKACPRC 420
>gi|374852558|dbj|BAL55489.1| endonuclease III [uncultured candidate division OP1 bacterium]
Length = 225
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 102/196 (52%), Gaps = 22/196 (11%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LD L+ T+LSQNT + N +A+ SLK FPT+E ++ A + + AI+ GGL KA I
Sbjct: 30 LDVLILTILSQNTNDQNRDRAYESLKKRFPTYESIVRAPTEKVAEAIKVGGLHQQKAKRI 89
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ IL+ + +G L YL+ LS + EL +F G+G KT VL F L + FPVDTH
Sbjct: 90 QEILRRIQRERGDYDLSYLKDLSTEHAVRELLKFDGVGKKTAGVVLTFSLNKPYFPVDTH 149
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCIK 254
+ I++ +G V D + +N +P LK+ L+ L HG+ LC C+
Sbjct: 150 IHRITQRLGLVKQREDPHDV---MNALVPDRLKYQLHLHLIWHGRQTCKARKPLCDQCV- 205
Query: 255 KGGNRQRKESAGNLCP 270
+LCP
Sbjct: 206 ----------IADLCP 211
>gi|317148991|ref|XP_003190266.1| HhH-GPD family base excision DNA repair protein [Aspergillus oryzae
RIB40]
Length = 457
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 123/283 (43%), Gaps = 66/283 (23%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHG--FPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
P+P PT + C + L ++HG PP + + +
Sbjct: 141 PFPDWPHPTPDACEEVNRLLSSVHGEIIPPSTIPEPS-----------------LTVTGC 183
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCI 125
GE SVLD L++T+LS T+ NS AF L F W+ V A K +
Sbjct: 184 GEVPSVLDALIRTLLSGATSGNNSALAFNGLVQKFGILHEGIGKGSVNWDAVRQAPLKDV 243
Query: 126 ENAIRCGGLAPTKAACIKNILKC-----------------------LLESKGK------- 155
AI+ GGLA K+ +K IL + +S+G
Sbjct: 244 FEAIKSGGLADVKSKNLKAILDMVHKENQERREILVKGEDAGPPDLMQKSEGSKQYEIAC 303
Query: 156 -----LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAI 210
L L +L L+ +++ EL ++ GIGPKT ACVL+F LQ+ F VDTH+F I K +
Sbjct: 304 ADQHFLSLNHLHTLNTEQVMEELIKYPGIGPKTAACVLLFCLQRPCFAVDTHIFRICKWL 363
Query: 211 GWVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
GWVP A + HL RIP LK+ L+ L HGK C C
Sbjct: 364 GWVPPDKATEITAFGHLEVRIPDHLKYSLHQLFIRHGKTCPRC 406
>gi|302419493|ref|XP_003007577.1| HhH-GPD family base excision DNA repair protein [Verticillium
albo-atrum VaMs.102]
gi|261353228|gb|EEY15656.1| HhH-GPD family base excision DNA repair protein [Verticillium
albo-atrum VaMs.102]
Length = 497
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 128/290 (44%), Gaps = 72/290 (24%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGF--PPEFVKYRNQRLKHNMTRDKNSVPLDMNEY 74
Q P+P P+ E+C + L LHG PE + + +
Sbjct: 158 QTPFPDWPAPSPEDCVEVHRILTELHGAFTAPEKIPAPSTSVAGC--------------- 202
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP------------TWEHVLAAEQ 122
GE ++D L++T++S +T+ N+ A + + + W+ V +E+
Sbjct: 203 --GEVPDIVDALIRTLISGHTSMQNANLAIRDVTAKYGQWDANSIGAGSIAWDKVRLSEE 260
Query: 123 KCIENAIRCGGLAPTKAACIKNILKCL--------------------------------- 149
+ +A++ GL PTK IK+IL +
Sbjct: 261 SEVVDAVKRAGLGPTKGRDIKSILDMVHRDNQIRLAAYVKEKETGEMADILGAQNLTQGQ 320
Query: 150 -------LESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ES G L L+++RGL+ DE E +++ GIG KT +C+++F LQQ F VDTH
Sbjct: 321 KDHQVNKMES-GILTLDHVRGLTSDEAMLEFTKYPGIGVKTSSCLILFCLQQPSFAVDTH 379
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
V+ K + WVP A R+ TY+H RIP LK+ L+ L HGK C C
Sbjct: 380 VWRFCKWLKWVPPKASRDDTYMHGEVRIPDRLKYGLHQLFIRHGKECGRC 429
>gi|238494280|ref|XP_002378376.1| HhH-GPD family base excision DNA repair protein [Aspergillus flavus
NRRL3357]
gi|220695026|gb|EED51369.1| HhH-GPD family base excision DNA repair protein [Aspergillus flavus
NRRL3357]
Length = 468
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 123/283 (43%), Gaps = 66/283 (23%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHG--FPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
P+P PT + C + L ++HG PP + + +
Sbjct: 152 PFPDWPHPTPDACEEVNRLLSSVHGEIVPPSTIPEPS-----------------LTVTGC 194
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCI 125
GE SVLD L++T+LS T+ NS AF L F W+ V A K +
Sbjct: 195 GEVPSVLDALIRTLLSGATSGNNSALAFNGLVQKFGILHEGIGKGSVNWDAVRQAPLKDV 254
Query: 126 ENAIRCGGLAPTKAACIKNILKC-----------------------LLESKGK------- 155
AI+ GGLA K+ +K IL + +S+G
Sbjct: 255 FEAIKSGGLADVKSKNLKAILDMVHKENQERREILVKGEDAGPSDLMQKSEGSKQYEIAC 314
Query: 156 -----LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAI 210
L L +L L+ +++ EL ++ GIGPKT ACVL+F LQ+ F VDTH+F I K +
Sbjct: 315 ADQHFLSLNHLHTLNTEQVMEELIKYPGIGPKTAACVLLFCLQRPCFAVDTHIFRICKWL 374
Query: 211 GWVPT-AADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
GWVP A + HL RIP LK+ L+ L HGK C C
Sbjct: 375 GWVPPDKATEITAFGHLEVRIPDHLKYSLHQLFIRHGKTCPRC 417
>gi|357419910|ref|YP_004932902.1| HhH-GPD family protein [Thermovirga lienii DSM 17291]
gi|355397376|gb|AER66805.1| HhH-GPD family protein [Thermovirga lienii DSM 17291]
Length = 244
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 125/248 (50%), Gaps = 26/248 (10%)
Query: 49 VKYRNQRLKHNMTRDKNSVP---------LDMNEYDEGEE--------ESVLDGLVKTVL 91
+K R R+ ++ DK + LD+ E G E E +DGL+KTVL
Sbjct: 1 MKTRTNRIVKSIKTDKAPIYAHKEKIILCLDLLEEKWGNEGRPSYESFEDPIDGLIKTVL 60
Query: 92 SQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLE 151
SQNT + N A+ SLK FP+W+ V+ A+ + + +AIR G+A KA IK IL +
Sbjct: 61 SQNTNDKNRDMAWESLKDRFPSWQQVIDAKVEEVADAIRSAGIANVKAQRIKKILATVNG 120
Query: 152 SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIG 211
G L+ L+ L +EI + LS G+GPKT+ACVL+F L FPVDTHV +SK +G
Sbjct: 121 VWGSCSLKGLKRLEKEEIISFLSSLPGVGPKTIACVLLFDLGIPAFPVDTHVARLSKRLG 180
Query: 212 WVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPL 271
+V L + +P+E + + HG+ I K N + + LC L
Sbjct: 181 FVGGNTLPEDIEKILEELVPEERFLGGHLNMIAHGR----AICKALNPRCQ-----LCSL 231
Query: 272 LNYCEKSN 279
+ CE N
Sbjct: 232 AHLCEHLN 239
>gi|312880248|ref|ZP_07740048.1| DNA-(apurinic or apyrimidinic site) lyase [Aminomonas paucivorans
DSM 12260]
gi|310783539|gb|EFQ23937.1| DNA-(apurinic or apyrimidinic site) lyase [Aminomonas paucivorans
DSM 12260]
Length = 232
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 2/177 (1%)
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGL 134
D G E LDGL+ TVLSQNT + N +A+ +L+ FP WE V A+ ++ AIR GL
Sbjct: 32 DLGHPEP-LDGLILTVLSQNTNDLNRDRAYITLRGRFPDWESVALADPGEVQEAIRIAGL 90
Query: 135 APTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ 194
A K I+ IL+ L E G L LR D + L G+GPKT ACV++F L
Sbjct: 91 ANAKGPSIQAILERLREDWGAPTLVPLRSWKPDRAREYLEALPGVGPKTAACVMVFDLGF 150
Query: 195 DDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
FPVDTHV I + +GWVP ++ + + + +E + L HG+ +CR
Sbjct: 151 PAFPVDTHVARICRRLGWVPANLPPHRIQRVMEETVARERFQGAHLNLIAHGRAVCR 207
>gi|374857375|dbj|BAL60228.1| endonuclease III [uncultured candidate division OP1 bacterium]
Length = 225
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 101/196 (51%), Gaps = 22/196 (11%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LD LV T+LSQNT + N +A+ SLK FP +E ++ A + + AI+ GGL KA I
Sbjct: 30 LDVLVLTILSQNTNDQNRDRAYESLKEKFPNYESIVRAPTEKVAEAIKVGGLHQQKAKRI 89
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ IL+ + +G L YL+ LS + EL +F G+G KT VL F L + FPVDTH
Sbjct: 90 QEILRRIQRERGDYDLSYLKDLSTEHAVRELLKFDGVGKKTAGVVLTFSLNKPYFPVDTH 149
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCIK 254
+ I++ +G V D + +N +P LK+ L+ L HG+ LC C+
Sbjct: 150 IHRITQRLGLVKQREDPHDV---MNALVPDRLKYQLHLHLIWHGRQTCKARKPLCDQCV- 205
Query: 255 KGGNRQRKESAGNLCP 270
+LCP
Sbjct: 206 ----------IADLCP 211
>gi|288575002|ref|ZP_06393359.1| HhH-GPD family protein [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570743|gb|EFC92300.1| HhH-GPD family protein [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 238
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 11/197 (5%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LDGL+ T+LSQNT + N +AF LK+ +P WE V + + +AIR G+A KA +
Sbjct: 49 LDGLMLTILSQNTNDNNRDRAFDKLKTLYPLWEDVASVTPDELADAIRVAGIANVKAGRM 108
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
++LK + + G+ L L+ D ++A L G+GPKT ACVL+F + FPVDTH
Sbjct: 109 LDVLKIIHDELGEYGLTGLKYRDHDGVRAFLEGLPGVGPKTAACVLVFDMDIPAFPVDTH 168
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQR 261
V + + WVP +A + ++ + +P E K + + +HGK +C+
Sbjct: 169 VARFCRRMEWVPRSATPVRIQEYMEKIVPDERKKGAHLNIISHGKSICKA---------- 218
Query: 262 KESAGNLCPLLNYCEKS 278
++ CPL++ C S
Sbjct: 219 RKPICQRCPLIDLCPSS 235
>gi|429853280|gb|ELA28361.1| HhH-GPD family base excision DNA repair protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 502
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 136/313 (43%), Gaps = 67/313 (21%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P H PTAE+C+ + D L A HG K +P GE
Sbjct: 145 PFPNHQGPTAEQCQIVHDILTAQHGERKSPSKI---------------LPPSTEVAGCGE 189
Query: 79 EESVLDGLVKTVLSQNTTEANS-------LKAFA-----SLKSTFPTWEHVLAAEQKCIE 126
+LD +++T++S NT N+ +KA+ L + W V + + +
Sbjct: 190 VPDILDAMMRTMVSANTKMTNADRVIKEIIKAYGVLDKDGLGAGSIDWNAVRLSPIQKLR 249
Query: 127 NAIRCGGLAPTKAACIKNILKCLLE----------------------------------- 151
A+ GGL+ K+ +K IL+ + E
Sbjct: 250 KAMITGGLSKVKSEQMKEILEKVFEENQLRKAAFVKEKESGEAASVKGAAKMSQGQKDHQ 309
Query: 152 ----SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEIS 207
G L L+++R + E E+ +++GIG KT +C+L+F LQQ F VDTHV+
Sbjct: 310 LLKIDNGILTLDHIRTMPAAEAMPEILQYKGIGIKTTSCLLLFCLQQPSFAVDTHVWRFC 369
Query: 208 KAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
+GWVP A +KT+ H + R+P ELK+ L+ L HG+ C C + G + +
Sbjct: 370 LWLGWVPRKASADKTFKHCDYRVPDELKYGLHQLFIVHGQQCYRC-RSGTAKGTAQWNAV 428
Query: 268 LCPLLNYCEKSNK 280
+CPL + ++ K
Sbjct: 429 VCPLEHLLDRFEK 441
>gi|147919100|ref|YP_687169.1| endonuclease III [Methanocella arvoryzae MRE50]
gi|110622565|emb|CAJ37843.1| predicted endonuclease III [Methanocella arvoryzae MRE50]
Length = 243
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
Query: 74 YDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
YDE + D L+ T+LSQNTT+ NSL+AFA+L + T E + +A + I + IR GG
Sbjct: 23 YDESRGKP-FDVLIMTILSQNTTDRNSLRAFANLYEVYHTPEQLASAPESAIADLIRIGG 81
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L KA IKNI + +++ L+++ + + EL +G+GPKT CVL+F
Sbjct: 82 LHEQKAKLIKNISQLVIDEYDG-TLDFVCETDPEVARKELLTIKGVGPKTADCVLLFSCD 140
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
+D PVDTHVF I+K +G VP AD K L +++P+ L+ + L G+ +C+
Sbjct: 141 RDVIPVDTHVFRITKRLGIVPEKADHEKARQILMEKVPEGLRGSTHVALIKFGREICK 198
>gi|385810254|ref|YP_005846650.1| endonuclease III [Ignavibacterium album JCM 16511]
gi|383802302|gb|AFH49382.1| Putative endonuclease III [Ignavibacterium album JCM 16511]
Length = 236
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 91/150 (60%), Gaps = 1/150 (0%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LD ++ T+LSQNT + NS KA+ +LKS +WE VL+ + IE I+ GL KA I
Sbjct: 29 LDIIIGTILSQNTNDKNSYKAYLNLKSNINSWEDVLSLKTSQIERIIKVAGLGKQKAKAI 88
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
KN+LK L + GKL L +L+ S DE+ EL +GIG KT +CVL+F ++ PVDTH
Sbjct: 89 KNLLKNLKKYHGKLSLTHLKKKSDDEVLDELILHKGIGVKTASCVLLFAFDRNVCPVDTH 148
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPK 232
V I +G V T ++ KT+ + IPK
Sbjct: 149 VHRILNRVGVVET-SNPEKTFNEIKSHIPK 177
>gi|242780797|ref|XP_002479670.1| HhH-GPD family base excision DNA repair protein [Talaromyces
stipitatus ATCC 10500]
gi|218719817|gb|EED19236.1| HhH-GPD family base excision DNA repair protein [Talaromyces
stipitatus ATCC 10500]
Length = 407
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 121/275 (44%), Gaps = 68/275 (24%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P S PT EEC + L +HG VK + + ++T GE
Sbjct: 133 PFPEFSHPTVEECEEVNRLLSTVHGE----VKAPTKVPQPSLTVTGC-----------GE 177
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIEN 127
SVLD L++TVLS TT ANS KAF L F W V A +
Sbjct: 178 VPSVLDALIRTVLSGATTGANSAKAFKGLVDRFGILEMGIGKGSVDWNAVRVAPINEVFE 237
Query: 128 AIRCGGLAPTKAACIKNILKCLLE--------------------------SKGK------ 155
A++ GGLA TK+ IK IL + E SK +
Sbjct: 238 AMKSGGLATTKSKYIKEILNMVYEENLARKEAHIKSEEEGNSGPAGAEHESKAQKEVEIA 297
Query: 156 ------LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKA 209
L L+++ L +E EL +F GIGPKT ACV++F LQ+ F VDTH+F I K
Sbjct: 298 LTDENVLSLDWIHALDKEEAMLELIKFPGIGPKTAACVVLFCLQRPCFAVDTHIFRICKW 357
Query: 210 IGWVPTAADRNKT----YLHLNQRIPKELKFDLNC 240
+GW+P+A + T + HL RIP LK L
Sbjct: 358 LGWLPSADTKRVTEITAFSHLEVRIPDHLKAVLGV 392
>gi|116754221|ref|YP_843339.1| HhH-GPD family protein [Methanosaeta thermophila PT]
gi|116665672|gb|ABK14699.1| HhH-GPD family protein [Methanosaeta thermophila PT]
Length = 219
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
+D LV T+LSQNT++ NS +AF LK F ++ +L A ++ I +AIR GGLA KAA I
Sbjct: 28 VDLLVLTILSQNTSDINSSRAFEQLKRRFGSYTEILNASEEEIADAIRPGGLADIKAARI 87
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
K L+ L + G + L L+ +S E + L GIGPKT + +++F PVDTH
Sbjct: 88 KGALERLRDDFGSVDLSPLKRMSAVEARNYLKSIPGIGPKTASVLMLFGFGMSAMPVDTH 147
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCIK 254
V+ +S+ +G VP A +T L + P E L+ L HG+ LC+ C
Sbjct: 148 VYRVSRRMGLVPENASIEETQRILEEITPHEKYISLHINLIRHGRLVCKARNPLCKKCEL 207
Query: 255 KG 256
KG
Sbjct: 208 KG 209
>gi|330508003|ref|YP_004384431.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosaeta concilii
GP6]
gi|328928811|gb|AEB68613.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Methanosaeta
concilii GP6]
Length = 224
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 96/169 (56%), Gaps = 1/169 (0%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LD LV T+LSQNT++ NSL+AFA+LK + +E +L A + + + IR GGLA KA I
Sbjct: 32 LDLLVMTILSQNTSDINSLRAFANLKRDYGNYESLLLAPTEEVADCIREGGLANIKALRI 91
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ +L + +G + + +L G+ DE + L G+GPKT + VL+F PVDTH
Sbjct: 92 QEVLLSIKRDRGAMDIGFLEGMDKDEAMSYLLDLPGVGPKTASIVLLFAFGMPFMPVDTH 151
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
VF +S+ +G VP K L + +P E + L HG+ +CR
Sbjct: 152 VFRVSQRLGLVPENLSPEKAQKALERIVPPECYHSFHLNLIRHGRQICR 200
>gi|269837103|ref|YP_003319331.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerobacter
thermophilus DSM 20745]
gi|269786366|gb|ACZ38509.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerobacter
thermophilus DSM 20745]
Length = 247
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV+T+LSQ+T++ NS +A+A L+ FPTW+ V+AA + + +AIR GGLA KA I+
Sbjct: 49 LVQTILSQHTSDVNSARAYAELRQRFPTWDEVVAAPVEEVADAIRSGGLARQKAPRIQAA 108
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L L S L L L + E K L+ GIGPKT ACVL+F + PVDTHV+
Sbjct: 109 LAAALNSGEDPPLASLFTLPLPEAKRRLTSLPGIGPKTAACVLLFACGRPALPVDTHVYR 168
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+S+ +G + + L + + + + L HG+
Sbjct: 169 VSRRVGLIDQGVSEAAAHDRLEPLLKPDEVYPFHVGLIRHGR 210
>gi|448473653|ref|ZP_21601795.1| HhH-GPD family protein [Halorubrum aidingense JCM 13560]
gi|445819165|gb|EMA69014.1| HhH-GPD family protein [Halorubrum aidingense JCM 13560]
Length = 232
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQN +AN+ +A A+L + + + AA+ + IR GLA KAA I+
Sbjct: 46 LVTTILSQNVADANTSRAAAALFDRYDDFAAIEAADHDELAETIRVAGLADQKAARIQRA 105
Query: 146 LKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E + G L +L ++ D KA L+ +G+GPKT + VL FH + VDTHV
Sbjct: 106 LAAIREETGGAYSLAFLDAMATDAAKAWLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVE 165
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
+SK G VP +A + L++ +P EL + L+ LL HG+ +C +G +
Sbjct: 166 RVSKRFGLVPASASNQAAHNRLDEIVPDELIYPLHVLLIRHGR--EHCSARGAD 217
>gi|448488148|ref|ZP_21607078.1| HhH-GPD family protein [Halorubrum californiensis DSM 19288]
gi|445696410|gb|ELZ48499.1| HhH-GPD family protein [Halorubrum californiensis DSM 19288]
Length = 233
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQN + N+ +A +L + + V AA+ + ++ IR GLA KAA I+
Sbjct: 46 LVTTILSQNVADENTRRASEALFDRYDDFAAVEAADHEELKETIRVAGLADQKAARIQRA 105
Query: 146 LKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E + G L +L + DE K L+ +G+GPKT + VL FH + VDTHV
Sbjct: 106 LTAIREETGGAYSLAFLDAMPTDEAKGWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVE 165
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
+SK G VP +A + + L+ RIP EL + L+ LL HG+ C +G +
Sbjct: 166 RVSKRFGLVPESASNERAHEVLDGRIPDELTYPLHVLLIRHGR--ERCSARGAD 217
>gi|345560267|gb|EGX43392.1| hypothetical protein AOL_s00215g128 [Arthrobotrys oligospora ATCC
24927]
Length = 531
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 93/173 (53%), Gaps = 15/173 (8%)
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--------TWEHVLAAEQKCIENA 128
GE SVLD L++TVLS NT+ NS KAF L + W V + K + A
Sbjct: 130 GEVPSVLDSLLRTVLSANTSAQNSTKAFHGLIKEYGHDPVHGGVNWSLVHRRDVKELYKA 189
Query: 129 IRCGGLAPTKAACIKNILKCLLES-------KGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
I GGLA K+ IK IL+ + E G++ L+YL DE+ L F+G+G
Sbjct: 190 IEKGGLANIKSKAIKGILEEVCEGTKKRGGKDGEISLDYLHEKGDDEVMETLMGFKGVGV 249
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKEL 234
KT CVLMF L++ FPVDTHVF ISK +GWVPT + + ++ P EL
Sbjct: 250 KTATCVLMFCLRRSAFPVDTHVFRISKLLGWVPTPGYQRELMSQQSKIAPLEL 302
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 219 RNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNR 259
R+ T+LHL+ R+P ELK+ L+ L+ HG+ C C GG +
Sbjct: 368 RDTTFLHLDARVPDELKYGLHQLMIRHGRYCPTCNAAGGRK 408
>gi|282856173|ref|ZP_06265456.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Pyramidobacter piscolens W5455]
gi|282585932|gb|EFB91217.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Pyramidobacter piscolens W5455]
Length = 234
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 100/200 (50%), Gaps = 11/200 (5%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
E LDGL++TVLSQNT + N AF LKS + +W+ V A Q I AI+ G+ KA
Sbjct: 43 EEPLDGLIETVLSQNTNDRNRDMAFERLKSRYGSWDRVAALPQDRIAEAIKPAGICNNKA 102
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
A I +LK + E G+ L+ L+ + ++ +G+GPKT ACVL F L FPV
Sbjct: 103 ATILRVLKTVKERFGEYSLKRLKSGTPAAAWDFMTHIQGVGPKTAACVLAFDLGFPAFPV 162
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGN 258
DTHV ISK +GW + L + +P +K + + HGK +C+ K G
Sbjct: 163 DTHVARISKRLGWADAKETPAEIQARLERLVPDGMKCAGHLDVIQHGKNICKARAPKCGE 222
Query: 259 RQRKESAGNLCPLLNYCEKS 278
CPL C S
Sbjct: 223 ----------CPLRGICPSS 232
>gi|448446559|ref|ZP_21590781.1| HhH-GPD family protein [Halorubrum saccharovorum DSM 1137]
gi|445683703|gb|ELZ36093.1| HhH-GPD family protein [Halorubrum saccharovorum DSM 1137]
Length = 232
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQN +AN+ +A +L + + + AA+ + + IR GLA KAA I+
Sbjct: 46 LVTTILSQNVADANTSRAAEALFERYDDFAAIEAADHEELRETIRVAGLADQKAARIQRA 105
Query: 146 LKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E + G L +L ++ D+ KA L+ +G+GPKT + VL FH + VDTHV
Sbjct: 106 LAAIREETGGAYSLAFLDAMATDDAKAWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVE 165
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
+SK G VP +A + L+ +P EL + L+ LL HG+ +C +G +
Sbjct: 166 RVSKRFGLVPESASNQAAHDALDALVPDELTYPLHVLLIRHGR--EHCSARGAD 217
>gi|448432620|ref|ZP_21585676.1| HhH-GPD family protein [Halorubrum tebenquichense DSM 14210]
gi|445686876|gb|ELZ39180.1| HhH-GPD family protein [Halorubrum tebenquichense DSM 14210]
Length = 232
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 1/163 (0%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQN + N+ +A +L + + + AA+ + + IR GL KAA I+
Sbjct: 46 LVTTILSQNVADENTARASEALFERYDDFAAIEAADHEALRETIRVAGLPDQKAARIQRA 105
Query: 146 LKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E + G L +L ++ D+ KA L+ +G+GPKT + VL FH + VDTHV
Sbjct: 106 LAAIREETGGAYSLAFLDAMATDDAKAWLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVE 165
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+SK G VP +A + + L++R+P EL + L+ LL HG+
Sbjct: 166 RVSKRFGLVPESASNGRAHEVLDERVPDELIYPLHVLLIRHGR 208
>gi|320159427|ref|YP_004172651.1| putative DNA glycosylase [Anaerolinea thermophila UNI-1]
gi|319993280|dbj|BAJ62051.1| putative DNA glycosylase [Anaerolinea thermophila UNI-1]
Length = 237
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 101/199 (50%), Gaps = 11/199 (5%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LD LV T+LSQNT + N A+ L+ FPTWE V A + + AIR GLA K A +
Sbjct: 36 LDELVSTILSQNTNDRNRDLAYQRLRERFPTWEDVRDAPLEQVIEAIRPAGLANQKGARL 95
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ +L+ + +G L L +L+ L +E + L RF+G+G KT + VL+F L + FPVDTH
Sbjct: 96 QEVLRQITAERGGLDLSFLQDLPAEEARTWLLRFKGVGVKTASIVLLFSLNKPAFPVDTH 155
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNR-QR 261
V +S IG P + +L Q E Y G L N I+ G
Sbjct: 156 VHRVSGRIGLRPPQMSAEDAHAYLAQVFTPE--------QYAAGHL--NLIRLGREVCHA 205
Query: 262 KESAGNLCPLLNYCEKSNK 280
++ A CPL CE + +
Sbjct: 206 RKPACPRCPLRAVCEWATQ 224
>gi|448449860|ref|ZP_21591955.1| HhH-GPD family protein [Halorubrum litoreum JCM 13561]
gi|445812626|gb|EMA62617.1| HhH-GPD family protein [Halorubrum litoreum JCM 13561]
Length = 233
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQN + N+ +A +L + + V A+ + ++ IR GLA KAA I+
Sbjct: 46 LVTTILSQNVADENTSRAAEALFDRYDDFAAVEGADHEELKETIRVAGLADQKAARIQRA 105
Query: 146 LKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E + G L +L + DE K L+ +G+GPKT + VL FH + VDTHV
Sbjct: 106 LTAIREETGGAYSLAFLDAMPTDEAKDWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVE 165
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
+SK G VP +A + + L++++P EL + L+ LL HG+ +C +G +
Sbjct: 166 RVSKRFGLVPESASNERAHEALDEQVPDELTYPLHVLLIRHGR--EHCSARGAD 217
>gi|448480701|ref|ZP_21604703.1| HhH-GPD family protein [Halorubrum arcis JCM 13916]
gi|445822018|gb|EMA71793.1| HhH-GPD family protein [Halorubrum arcis JCM 13916]
Length = 233
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQN + N+ +A +L + + V +A+ + ++ IR GLA KAA I+
Sbjct: 46 LVTTILSQNVADENTSRAAEALFDRYDDFAAVESADHEELKETIRVAGLADQKAARIQRA 105
Query: 146 LKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E + G L +L + DE K L+ +G+GPKT + VL FH + VDTHV
Sbjct: 106 LTAIREETGGAYSLAFLDAMPTDEAKDWLTEIKGVGPKTASVVLNFHFGKPTIAVDTHVE 165
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
+SK G VP +A + + L++++P EL + L+ LL HG+ +C +G +
Sbjct: 166 RVSKRFGLVPESASNERAHEALDEQVPDELTYPLHVLLIRHGR--EHCSARGAD 217
>gi|448456097|ref|ZP_21594950.1| HhH-GPD family protein [Halorubrum lipolyticum DSM 21995]
gi|445812932|gb|EMA62918.1| HhH-GPD family protein [Halorubrum lipolyticum DSM 21995]
Length = 233
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQN +AN+ +A +L + +E + AA+ + IR GLA KAA I+
Sbjct: 46 LVTTILSQNVADANTSRATEALFERYDGFEAIEAADHDELAETIRVAGLADQKAARIQRA 105
Query: 146 LKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E + G L +L ++ D+ K L+ +G+GPKT + VL FH + VDTHV
Sbjct: 106 LAAIREETGGAYSLAFLDAMATDDAKEWLTAIKGVGPKTASVVLNFHFGKPTMAVDTHVE 165
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
+SK G VP +A + L++ +P EL + L+ LL HG+ +C +G +
Sbjct: 166 RVSKRFGLVPESASNRAAHDALDELVPDELIYPLHVLLIRHGRT--HCSARGAD 217
>gi|448428859|ref|ZP_21584485.1| HhH-GPD family protein [Halorubrum terrestre JCM 10247]
gi|445675837|gb|ELZ28365.1| HhH-GPD family protein [Halorubrum terrestre JCM 10247]
Length = 233
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQN + N+ +A +L + + + A+ + ++ IR GLA KAA I+
Sbjct: 46 LVTTILSQNVADENTSRAAEALFDRYDDFAAIEGADHEELKETIRVAGLADQKAARIQRA 105
Query: 146 LKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E + G L +L + DE K L+ +G+GPKT + VL FH + VDTHV
Sbjct: 106 LTAIREETGGAYSLAFLDAMPTDEAKDWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVE 165
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
+SK G VP +A + + L++++P EL + L+ LL HG+ +C +G +
Sbjct: 166 RVSKRFGLVPESASNERAHEALDEQVPDELTYPLHVLLIRHGR--EHCSARGAD 217
>gi|448510854|ref|ZP_21616067.1| HhH-GPD family protein [Halorubrum distributum JCM 9100]
gi|448523661|ref|ZP_21618848.1| HhH-GPD family protein [Halorubrum distributum JCM 10118]
gi|445695608|gb|ELZ47710.1| HhH-GPD family protein [Halorubrum distributum JCM 9100]
gi|445700734|gb|ELZ52725.1| HhH-GPD family protein [Halorubrum distributum JCM 10118]
Length = 233
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQN + N+ +A +L + + V +A+ + ++ IR GL KAA I+
Sbjct: 46 LVTTILSQNVADENTSRAAEALFDRYDDFAAVESADHEELKETIRVAGLTDQKAARIQRA 105
Query: 146 LKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E + G L +L + DE K L+ +G+GPKT + VL FH + VDTHV
Sbjct: 106 LTAIREETGGAYSLAFLDAMPTDEAKDWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVE 165
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
+SK G VP +A + + L++++P EL + L+ LL HG+ +C +G +
Sbjct: 166 RVSKRFGLVPESASNERAHEALDEQVPDELTYPLHVLLIRHGR--EHCSARGAD 217
>gi|452820109|gb|EME27156.1| HhH-GPD base excision DNA repair protein-related protein [Galdieria
sulphuraria]
Length = 203
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 80/126 (63%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
+VLD L+ +LSQNTT+ NS KAF LK+ + W V+ A + +E IR GLA TKAA
Sbjct: 78 TVLDTLIAVMLSQNTTDRNSTKAFEQLKTRYEDWNQVIEAPLRDVEECIRVAGLAKTKAA 137
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
IK +L+ L + +G+L LE LRG + ++ ELSRF+G+G KT+ACV F L FP
Sbjct: 138 RIKELLETLQKERGELSLESLRGSCTETVEKELSRFKGVGLKTMACVSAFSLGLQVFPGA 197
Query: 201 THVFEI 206
+ E+
Sbjct: 198 YYYLEV 203
>gi|448501053|ref|ZP_21612062.1| HhH-GPD family protein [Halorubrum coriense DSM 10284]
gi|445695794|gb|ELZ47894.1| HhH-GPD family protein [Halorubrum coriense DSM 10284]
Length = 233
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 1/163 (0%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQN + N+ +A +L + + + AA+ + + IR GL KAA I+
Sbjct: 46 LVTTILSQNVADENTRRASEALFERYDDFAAIEAADHEELRETIRVAGLPDQKAARIQRS 105
Query: 146 LKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E + G L +L L D+ KA L+ +G+GPKT + VL FH + VDTHV
Sbjct: 106 LTAIREETGGAYSLAFLDALPTDDAKAWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVE 165
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+SK G VP +A + + L++R+P EL + L+ LL HG+
Sbjct: 166 RVSKRFGLVPESASNERAHDVLDERVPDELIYPLHVLLIRHGR 208
>gi|222479474|ref|YP_002565711.1| HhH-GPD family protein [Halorubrum lacusprofundi ATCC 49239]
gi|222452376|gb|ACM56641.1| HhH-GPD family protein [Halorubrum lacusprofundi ATCC 49239]
Length = 233
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 95/174 (54%), Gaps = 3/174 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQN +AN+ +A +L + + + AA+ + ++ IR GLA KAA I+
Sbjct: 46 LVTTILSQNVADANTSRATTALFDRYDDFAAIEAADHEELKETIRVAGLADQKAARIQRA 105
Query: 146 LKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E + G L +L ++ D+ K L +G+GPKT + VL FH + VDTHV
Sbjct: 106 LAAIREETGGAYSLAFLDAMATDDAKEWLMEIKGVGPKTASVVLNFHFGKPTMAVDTHVE 165
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
+SK G VP +A + L++ +P EL + L+ LL HG+ C +G +
Sbjct: 166 RVSKRFGLVPESASNQAAHDALDKLVPDELIYPLHVLLIRHGR--ERCSARGAD 217
>gi|448529547|ref|ZP_21620567.1| HhH-GPD family protein [Halorubrum hochstenium ATCC 700873]
gi|445708716|gb|ELZ60554.1| HhH-GPD family protein [Halorubrum hochstenium ATCC 700873]
Length = 232
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 1/163 (0%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQN + N+ +A +L + + + AA+ + + IR GL KAA I+
Sbjct: 46 LVTTILSQNVADENTARASEALFERYDDFAAIEAADHEELRETIRVAGLPDQKAARIQRA 105
Query: 146 LKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E + G L +L ++ D+ KA L+ +G+GPKT + VL FH + VDTHV
Sbjct: 106 LTAIREETGGAYSLAFLDAMATDDAKAWLTEIKGVGPKTASVVLNFHFGKPTMAVDTHVE 165
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+SK G VP +A + + L++++P EL + L+ LL HG+
Sbjct: 166 RVSKRFGLVPESASNGRAHEVLDEQVPDELIYPLHVLLIRHGR 208
>gi|367021722|ref|XP_003660146.1| hypothetical protein MYCTH_2298082 [Myceliophthora thermophila ATCC
42464]
gi|347007413|gb|AEO54901.1| hypothetical protein MYCTH_2298082 [Myceliophthora thermophila ATCC
42464]
Length = 573
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 127/292 (43%), Gaps = 50/292 (17%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
PYP PT E+C + L LHG + +P E G
Sbjct: 263 PYPYRRVPTPEDCEEVHAILTQLHG----------------EVKQPEKIPAASLEVAGCG 306
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIE 126
E VLD L++T++S NT + + A +L + W + + + +
Sbjct: 307 EVPCVLDALLRTLISGNTLMSLADAAIKNLADHYGLRQEGTGAGSIDWNKIRLSSHQELA 366
Query: 127 NAIRCGGLAPTKAACIKNILKCLLESK-------------GK-----LCLEYLRGLSIDE 168
I+ G P K+ IK IL + + GK L L+Y+ G++ DE
Sbjct: 367 QVIKVAGNGPMKSKHIKQILDIVFDENVQRAMMQDPAPEAGKKAQDLLSLDYMHGMTKDE 426
Query: 169 IKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQ 228
A+ + G+G KT ACV +F L+ F VDTHV + + +GWVP AD + + H +
Sbjct: 427 AMAKFVSYPGVGIKTAACVTLFCLRLPCFAVDTHVHKFCRWLGWVPENADPDNCFRHGDF 486
Query: 229 RIPKELKFDLNCLLYTHGKLCRNCIK--KGGNRQRKESAGNLCPLLNYCEKS 278
+P LK+ L+ L HG++C C K K G R E+ CPL + ++S
Sbjct: 487 MVPDHLKYGLHQLFIRHGQVCFKCRKATKPGTRDWNEAPD--CPLEHLLDRS 536
>gi|346980203|gb|EGY23655.1| base excision DNA repair protein [Verticillium dahliae VdLs.17]
Length = 378
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 113/245 (46%), Gaps = 50/245 (20%)
Query: 17 QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE 76
+ P+P + PTAEE + L +LHG + R +K +R
Sbjct: 119 KSPFPDFAHPTAEEAKLAHRILTSLHG-----ARTRPDTVKAPTSR-----------AGC 162
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKC---IENAIRCGG 133
G+ SVLD LV+T+LSQNT++ANS +A S+ + + + A ++ AI+CGG
Sbjct: 163 GDSPSVLDALVRTILSQNTSDANSTRAKRSMDAVYGGSDAWAAIAAGGAPKLQEAIKCGG 222
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
LA K+ I IL G L+++ + DE EL F+G+GPKT +CVL+F L+
Sbjct: 223 LAAVKSKVILGILAQAKARYGAYSLDHMFDRTDDEAMRELLAFQGVGPKTASCVLLFCLR 282
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCI 253
++ F VDTH K+ L+ LL HGK+C C
Sbjct: 283 RESFAVDTHD-------------------------------KYALHILLVKHGKVCDECK 311
Query: 254 KKGGN 258
G N
Sbjct: 312 AGGKN 316
>gi|336264806|ref|XP_003347179.1| hypothetical protein SMAC_05479 [Sordaria macrospora k-hell]
gi|380093873|emb|CCC08838.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 560
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 128/287 (44%), Gaps = 51/287 (17%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
PYP PTA+ C + L LHG + + K + + + GE
Sbjct: 283 PYPNRHVPTAKACEKVHRILSVLHG---------------KVEQPKKTPKASLEKAGCGE 327
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIEN 127
VLD L++T++S NT A + +A ++ + WE V Q+ +
Sbjct: 328 VPCVLDALLRTLISGNTLMAMADQAIRNVAQEYGIREHGSGAGSINWEKVATEPQEKLAQ 387
Query: 128 AIRCGGLAPTKAACIKNIL-------------KCLLESKGK--------LCLEYLRGLSI 166
AI+ G KA IK IL K + G+ L L+++ L+
Sbjct: 388 AIKVSGNGNQKAKNIKLILDMVALEMAQMAREKSVNNGGGEQEVAFPETLNLDHMHTLTK 447
Query: 167 DEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHL 226
DE +L R+ GIG K+ ACV +F L++ F VDTHV + +GWVP A+ + H
Sbjct: 448 DEAMTKLVRYPGIGIKSAACVTLFCLRKPCFGVDTHVHRFCRWLGWVPEKANPEDCFRHC 507
Query: 227 NQRIPKELKFDLNCLLYTHGKLCRNCIK--KGGNRQRKESAGNLCPL 271
+ ++P LK+ L+ L HG+ C C K K G R+ KES CPL
Sbjct: 508 DVKVPDHLKYRLHQLFIRHGQQCFRCRKQTKPGTREWKESP--RCPL 552
>gi|448627973|ref|ZP_21672205.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
gi|445758595|gb|EMA09901.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
Length = 233
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 31/226 (13%)
Query: 28 AEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDG-- 85
A + R + D+L++LHG P++ D G + S G
Sbjct: 9 AADVRDLHDDLVSLHG------------------------PVERTS-DHGADASADPGEG 43
Query: 86 ---LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV T+LSQN + N+ +A +L + + +E + +A+ + + IR GL KAA I
Sbjct: 44 VRQLVTTILSQNVADENTRRASEALFAAYDDFEAIESADHDKLADTIRVAGLPDQKAARI 103
Query: 143 KNILKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
+ L + E + G L +L + +E K L+ +G+GPKT + VL FH + VDT
Sbjct: 104 QRALAAIREETGGAYSLAFLDAMPAEEAKGWLTDIKGVGPKTASVVLNFHFGKPTMAVDT 163
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
HV +SK G V +A + + L+ IP EL + L+ LL THG+
Sbjct: 164 HVERVSKRFGLVTESATNKRAHDELDALIPDELTYPLHVLLITHGR 209
>gi|257388060|ref|YP_003177833.1| HhH-GPD family protein [Halomicrobium mukohataei DSM 12286]
gi|257170367|gb|ACV48126.1| HhH-GPD family protein [Halomicrobium mukohataei DSM 12286]
Length = 236
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 1/163 (0%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQN + N+ +A SL T+ + + AA+ + IR GL KAA I+
Sbjct: 47 LVTTILSQNVADENTRRASESLFETYEDFAAIEAADHDELAETIRVAGLPDQKAARIQRA 106
Query: 146 LKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E + G L +L L E KA L+ +G+GPKT + VL FH + VDTHV
Sbjct: 107 LTAIREETGGAYSLAFLDALPTAEAKAWLTDIKGVGPKTASVVLNFHFGKPTMAVDTHVE 166
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+SK G VP A + + L+ +P EL + L+ LL HG+
Sbjct: 167 RVSKRFGLVPEDASNERAHDALDAVVPDELTYPLHVLLIRHGR 209
>gi|171684933|ref|XP_001907408.1| hypothetical protein [Podospora anserina S mat+]
gi|170942427|emb|CAP68079.1| unnamed protein product [Podospora anserina S mat+]
Length = 813
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 121/292 (41%), Gaps = 48/292 (16%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
PYP PT E C + L +HG + + +P E G
Sbjct: 386 PYPYRRVPTPEACEEVHRILTEMHG----------------EVKQPDRIPTASLEIAGCG 429
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E VLD L++T++S NT A + A +L F WE V + + +
Sbjct: 430 EVPCVLDALLRTLISGNTLMAMADAAIRNLGKDFGIRTEGSGAGSIDWEKVRVSSPQALV 489
Query: 127 NAIRCGGLAPTKAACIKNILKCLLESKGK--------------------LCLEYLRGLSI 166
N+IR G P KA IK IL + E + L L+Y+ ++
Sbjct: 490 NSIRISGNGPKKAQHIKLILDKVYEENLERMKQAGTAENTDKDGAPPDLLSLDYMHAMTK 549
Query: 167 DEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHL 226
D+ + F GIG KT ACV +F L+ F VDTHV + + +GW P AD + + H
Sbjct: 550 DQAMEKFVSFPGIGIKTAACVSLFCLRMPCFAVDTHVHKFCRWLGWTPVKADPDNVFRHG 609
Query: 227 NQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKS 278
+ +P LK+ L+ L HG+ C C K + CPL + ++S
Sbjct: 610 DFMVPDHLKYGLHQLFIRHGQTCFKCRKNTKPGTKDWLGAPDCPLEHLLDRS 661
>gi|55376682|ref|YP_134533.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|448642537|ref|ZP_21678496.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
gi|55229407|gb|AAV44827.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|445759337|gb|EMA10615.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
Length = 233
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 31/226 (13%)
Query: 28 AEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDG-- 85
A R + D+L++LHG P++ D G + S G
Sbjct: 9 AASVRDLHDDLVSLHG------------------------PVERTS-DHGADASADPGEG 43
Query: 86 ---LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV T+LSQN + N+ +A +L + + + + +A+ + + IR GL KAA I
Sbjct: 44 VRQLVTTILSQNVADENTRRASEALFTAYSDFAAIESADHDELADTIRVAGLPDQKAARI 103
Query: 143 KNILKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
+ L + E + G L +L + DE K L+ +G+GPKT + VL FH + VDT
Sbjct: 104 QRALAAIREETGGAYSLAFLDAMPTDEAKGWLTDIKGVGPKTASVVLNFHFGKPTMAVDT 163
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
HV +SK G V +A + + L+ IP EL + L+ LL THG+
Sbjct: 164 HVERVSKRFGLVTESATNKRAHDELDAIIPDELTYPLHVLLITHGR 209
>gi|448651578|ref|ZP_21680628.1| endonuclease III [Haloarcula californiae ATCC 33799]
gi|445770458|gb|EMA21521.1| endonuclease III [Haloarcula californiae ATCC 33799]
Length = 233
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 31/226 (13%)
Query: 28 AEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDG-- 85
A R + D+L++LHG P++ D G + S G
Sbjct: 9 AASVRDLHDDLVSLHG------------------------PVERTS-DHGADASADPGEG 43
Query: 86 ---LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV T+LSQN + N+ +A +L + + + + +A+ + + IR GL KAA I
Sbjct: 44 VRQLVTTILSQNVADENTRRASEALFTAYSDFAAIESADHDELADTIRVAGLPDQKAARI 103
Query: 143 KNILKCLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
+ L + E + G L +L + DE K L+ +G+GPKT + VL FH + VDT
Sbjct: 104 QRALAAIREETGGAYSLAFLDAMPTDEAKGWLTDIKGVGPKTASVVLNFHFGKPTMAVDT 163
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
HV +SK G V +A + + L+ IP EL + L+ LL THG+
Sbjct: 164 HVERVSKRFGLVTESATNKRAHDELDAIIPDELTYPLHVLLITHGR 209
>gi|336463475|gb|EGO51715.1| hypothetical protein NEUTE1DRAFT_89368 [Neurospora tetrasperma FGSC
2508]
gi|350297308|gb|EGZ78285.1| DNA glycosylase [Neurospora tetrasperma FGSC 2509]
Length = 381
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 130/285 (45%), Gaps = 49/285 (17%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
PYP PT+E C + L A+HG + + K + + GE
Sbjct: 99 PYPNRQAPTSEACEDVYRILAAMHG---------------KVEQPKEMPKASLEKAGCGE 143
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIEN 127
VLD L++T++S NT A + +A ++ + WE V + ++ +
Sbjct: 144 VPCVLDALLRTLISGNTLMAMADRAIRNVAQEYGLREHGSGVGSINWEKVASEPEEKLAQ 203
Query: 128 AIRCGGLAPTKAACIKNILKCL--------LESKGK-----------LCLEYLRGLSIDE 168
AI+ G KA IK IL + +E+ G L L+++ ++ DE
Sbjct: 204 AIKVSGNGNQKAKHIKLILDMVALEMAQLAMENNGTGGKREVAFPETLNLDHMHTVTKDE 263
Query: 169 IKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQ 228
A+L ++ GIG K+ ACV +F L+ F VDTHV + +GWVP A+ + H +
Sbjct: 264 AMAKLVQYPGIGIKSAACVTLFCLRMPCFAVDTHVHRFCRWLGWVPEKANAEDCFRHCDV 323
Query: 229 RIPKELKFDLNCLLYTHGKLCRNCIK--KGGNRQRKESAGNLCPL 271
++P LK+ L+ L HG+ C C K + G ++ +E+ CPL
Sbjct: 324 KVPDHLKYGLHQLFIRHGQQCFKCRKATRPGTKEWREAPE--CPL 366
>gi|85114220|ref|XP_964657.1| hypothetical protein NCU02035 [Neurospora crassa OR74A]
gi|10303298|emb|CAC10093.1| conserved hypothetical protein [Neurospora crassa]
gi|28926447|gb|EAA35421.1| predicted protein [Neurospora crassa OR74A]
Length = 572
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 130/285 (45%), Gaps = 49/285 (17%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
PYP PT+E C + L +HG + + K + + GE
Sbjct: 290 PYPNRQAPTSEACEDVYRVLATMHG---------------KVEQPKEIPKASLEKAGCGE 334
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIEN 127
VLD L++T++S NT A + +A ++ + WE V + ++ +
Sbjct: 335 VPCVLDALLRTLISGNTLMAMADRAIRNVAQEYGLREHGSGIGSINWEKVASEPEEKLAQ 394
Query: 128 AIRCGGLAPTKAACIKNILKCL--------LESKGK-----------LCLEYLRGLSIDE 168
AI+ G KA IK IL + +E+KG L L+++ ++ DE
Sbjct: 395 AIKVSGNGNQKAKHIKLILDMVALEMAQMAMENKGTGGKREVAFSETLNLDHMHTVTKDE 454
Query: 169 IKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQ 228
A+L ++ GIG K+ ACV +F L+ F VDTHV + +GWVP A+ + H +
Sbjct: 455 AMAKLVQYPGIGIKSAACVTLFCLRMPCFAVDTHVHRFCRWLGWVPEKANAEDCFRHCDV 514
Query: 229 RIPKELKFDLNCLLYTHGKLCRNCIK--KGGNRQRKESAGNLCPL 271
++P LK+ L+ L HG+ C C K + G ++ +E+ CPL
Sbjct: 515 KVPDHLKYGLHQLFIRHGQQCFKCRKATRPGTKEWREAPE--CPL 557
>gi|159900799|ref|YP_001547046.1| HhH-GPD family protein [Herpetosiphon aurantiacus DSM 785]
gi|159893838|gb|ABX06918.1| HhH-GPD family protein [Herpetosiphon aurantiacus DSM 785]
Length = 224
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS TTEAN + + +L++TFPTWE +LAA + + AI+ AP KA I+
Sbjct: 34 LISTMLSHQTTEANEERGYQNLRATFPTWEAILAAPVEAVAEAIKPANYAPAKANNIQAA 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L +L +G++ +++L LS + A L+ RG+GPKT + VL+F + PVDTHV
Sbjct: 94 LAKILAERGEISIDFLAELSTEAAMAWLTGLRGVGPKTASLVLLFCFSKPILPVDTHVHR 153
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIP--KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKE 263
+S+ +G V A + + L Q +P E F+ + L HG+ R C+ K R R
Sbjct: 154 VSQRLGLV-KAKTPTEAHEILWQLLPHDAEWLFNYHVALLRHGQ--RICLAK---RPR-- 205
Query: 264 SAGNLCPLLNYC 275
N CPL C
Sbjct: 206 --CNQCPLTAQC 215
>gi|365174645|ref|ZP_09362085.1| hypothetical protein HMPREF1006_00030 [Synergistes sp. 3_1_syn1]
gi|363614442|gb|EHL65936.1| hypothetical protein HMPREF1006_00030 [Synergistes sp. 3_1_syn1]
Length = 231
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 83/154 (53%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
E LD L+ T+LSQNT + KAFA +K+ + +WE V A+ + ++ +R G++ TK
Sbjct: 31 EEPLDDLILTILSQNTNDKLRDKAFAKMKAAYSSWEEVAHADLEELKEVLRIAGMSSTKP 90
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
I+ IL + E G L+ LRG E++ L+ G+GPKT A V F L FPV
Sbjct: 91 PRIQQILAAVKEKFGGYTLKELRGWKQPEVREYLTSLPGVGPKTSAIVECFDLGMPGFPV 150
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
DTH+ +SK GW + +K L +P E
Sbjct: 151 DTHITRLSKRFGWADEKSPPDKIQARLEAALPPE 184
>gi|340975657|gb|EGS22772.1| hypothetical protein CTHT_0012470 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 628
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 124/296 (41%), Gaps = 52/296 (17%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
PYP PT E C + L LHG + +P E G
Sbjct: 288 PYPYRRVPTPEACEHVYRILADLHG----------------EVKQPEKMPAASLEVAGCG 331
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIE 126
E VLD L++T++S NT A + A +L + W+ V + +
Sbjct: 332 EVPCVLDALLRTLISGNTLMALADAAVKNLVQHYGLRKVGTGAGSIDWDKVRLGSHRELA 391
Query: 127 NAIRCGGLAPTKAACIKNILKCLL----------------ESKGK--------LCLEYLR 162
I+ G P KA+ IK IL + E GK L L+Y+
Sbjct: 392 ETIKIAGNGPKKASHIKQILDMVYAENLEHIEAQTVDKGSEPGGKHGTDRQDLLSLDYMH 451
Query: 163 GLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKT 222
++ DE A+L + G+G KT ACV +F L+ F VDTHV + + +GWVP AD +
Sbjct: 452 RMTKDEAMAKLVTYPGVGIKTAACVTLFCLRLPCFAVDTHVHKFCRWLGWVPPNADPDNC 511
Query: 223 YLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKS 278
+ H + +P LK+ L+ L HG+ C C K ++ + CPL + ++S
Sbjct: 512 FRHGDVMVPDHLKYGLHQLFIRHGQQCFKCRKATKPGTKEWDNADPCPLEHLLDRS 567
>gi|367042070|ref|XP_003651415.1| hypothetical protein THITE_2111678 [Thielavia terrestris NRRL 8126]
gi|346998677|gb|AEO65079.1| hypothetical protein THITE_2111678 [Thielavia terrestris NRRL 8126]
Length = 588
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 131/301 (43%), Gaps = 59/301 (19%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
PYP PT E C + L HG + K + L+ GE
Sbjct: 277 PYPYRRVPTPEACEEVHRILSEFHGEVKQPEKMPSASLEVAGC---------------GE 321
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHV-LAAEQKCIE 126
VLD L++T++S NT A + A +L + WE V L++ Q+ +E
Sbjct: 322 VPCVLDALLRTLISGNTLMAMADAAIKNLAQHYGLRTEGTGAGSINWEKVRLSSHQELVE 381
Query: 127 NAIRCGGLAPTKAACIKNILKCLLE-----SKGK----------------------LCLE 159
I+ G P KA IK IL + E ++G+ L L+
Sbjct: 382 -VIKIAGNGPKKARHIKQILDMVYEENLQRAQGQPSLTKANPIQRGDGTCVATQNLLSLD 440
Query: 160 YLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADR 219
++ +S DE A+ + GIG KT ACV +F L+ F VDTHV + + +GWVP AD
Sbjct: 441 HMHSMSKDEAMAKFVSYPGIGIKTAACVTLFCLRMPCFAVDTHVHKFCRWLGWVPAKADP 500
Query: 220 NKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC--IKKGGNRQRKESAGNLCPLLNYCEK 277
+ + H +P LK+ L+ L HG+ C C + K G ++ E+ CPL + ++
Sbjct: 501 DNCFRHGEVMVPDHLKYGLHQLFIRHGQQCFKCRKVTKPGTKEWDEAPD--CPLEHLLDR 558
Query: 278 S 278
S
Sbjct: 559 S 559
>gi|406861525|gb|EKD14579.1| base excision DNA repair protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 607
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 125/304 (41%), Gaps = 85/304 (27%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
P+P H P+ + C + L HG +R + +PL E G
Sbjct: 140 PFPDHLEPSPKACEEVYHILSGSHGH----------------SRHPSEMPLPSLEVAGCG 183
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIE 126
E S+LD L++T+LS NT+ N+ K L+ F W+ V AE+ +
Sbjct: 184 EVPSLLDALMRTILSGNTSMENANKKLIGLRDAFGLCQRGAGAGSIDWDRVYRAERSLVV 243
Query: 127 NAIRCGGLAPTKAACIKNILKCLLESKGKLCLEY--------------LRGL---SIDEI 169
A + GG K I+ + + E+ C+ Y RGL S +EI
Sbjct: 244 EATKRGGSQEKKTDEIQRTMSMIYENN---CIRYSALLRQKETGEPCTFRGLKPESSEEI 300
Query: 170 KAELSRFR-------------------------GIGPKTVACVLMFHLQQDDFPVDTHVF 204
AE+ +F G+G KT +CV++F LQ++ F VDTHV
Sbjct: 301 DAEIMKFEKEPLTMHYVFQMTDEDAMEELIQYYGVGVKTASCVMLFCLQRNSFAVDTHVH 360
Query: 205 EISKAIGWV----------PTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIK 254
+ +GWV P N+T+ H + R+P LK+ L+ L HG+ C C+
Sbjct: 361 RFCRWLGWVPFRVTMKNKEPRKVSENETFSHCDVRVPNHLKYGLHQLFIKHGQDCYRCV- 419
Query: 255 KGGN 258
GGN
Sbjct: 420 -GGN 422
>gi|436837874|ref|YP_007323090.1| HhH-GPD family protein [Fibrella aestuarina BUZ 2]
gi|384069287|emb|CCH02497.1| HhH-GPD family protein [Fibrella aestuarina BUZ 2]
Length = 236
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS TT AN + A+ +++ FPTWE V A + +AI+ KA I+N+
Sbjct: 33 LIGTILSHRTTHANEVTAYRTMRERFPTWEAVRDAPLPDLIDAIQTANYPEIKAPYIQNV 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L+ L+ +G +++LR LS +E L+ GIGPKT +L+F Q+ PVDTHV
Sbjct: 93 LRVLIAERGTANIDFLRELSTEEAMQWLTNLPGIGPKTATLLLLFAFQKPVLPVDTHVHR 152
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKE--LKFDLNCLLYTHGK 247
+++ IG + K + L +P + + F+ + Y HG+
Sbjct: 153 VTQRIGAIGPKVSAAKAHDLLLSYLPADAPVLFNFHKHFYWHGQ 196
>gi|169609472|ref|XP_001798155.1| hypothetical protein SNOG_07828 [Phaeosphaeria nodorum SN15]
gi|111064174|gb|EAT85294.1| hypothetical protein SNOG_07828 [Phaeosphaeria nodorum SN15]
Length = 516
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 117/284 (41%), Gaps = 67/284 (23%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-G 77
PYP + RPTAEEC+ + L +HG K ++ +P+ E G
Sbjct: 159 PYPNYPRPTAEECQEVTRLLEKVHG------KVEAPKV----------IPMPSLEVSGCG 202
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCIE 126
E SVLD L++T LS T+ NS +AFA L + F W V A+ K +
Sbjct: 203 EVPSVLDALIRTRLSAATSGTNSSRAFAGLVARFGVLKSGIGKGSVDWNAVRLADTKDVF 262
Query: 127 NAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRG-----------LSIDEIKAELSR 175
AI+ GGLA K+ IK IL+ + S+ K +++D L R
Sbjct: 263 EAIKSGGLADVKSKDIKKILQ-MSRSRAKKTNPKEEQQQEKEKADNDVVTLDPPTPPLHR 321
Query: 176 ---------FRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAAD-------- 218
R PK F VDTHVF + K +GWVP+ D
Sbjct: 322 RTPSLTLPATRASAPKPPPACSSSVSSAPTFAVDTHVFRLCKWLGWVPSPGDPAGLPPNA 381
Query: 219 ----------RNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
RN TY H R+P +LK+ L+ LL HGK C C
Sbjct: 382 KPGAVFPGANRNSTYAHCEVRVPDDLKYPLHQLLIRHGKSCPRC 425
>gi|260655074|ref|ZP_05860562.1| base excision DNA repair protein, HhH-GPD family [Jonquetella
anthropi E3_33 E1]
gi|424844920|ref|ZP_18269531.1| putative endoIII-related endonuclease [Jonquetella anthropi DSM
22815]
gi|260630185|gb|EEX48379.1| base excision DNA repair protein, HhH-GPD family [Jonquetella
anthropi E3_33 E1]
gi|363986358|gb|EHM13188.1| putative endoIII-related endonuclease [Jonquetella anthropi DSM
22815]
Length = 234
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Query: 70 DMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
D+ +DE LDGL+ VLSQNT + N AF LK+ PTW A Q + + I
Sbjct: 38 DVTSFDEP-----LDGLILIVLSQNTNDRNRDMAFDRLKAACPTWADAAALSQAELISLI 92
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
R GL +K+A I +L + G+ L LR E ++ +G+G KT ACV++
Sbjct: 93 RPAGLCDSKSATIIRVLGAAKDLTGQYSLGLLRKKKPAEAWNFMTSIKGVGVKTAACVMV 152
Query: 190 FHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-- 247
F L FPVDTHV + +GW P A + +P K + + THG+
Sbjct: 153 FDLGFPAFPVDTHVARFCRRMGWAPEKASPAAIQEMMEGLVPDSRKAGAHLNIITHGRRV 212
Query: 248 ------LCRNCIKKG 256
LC +C+ +G
Sbjct: 213 CKARGPLCGDCLLRG 227
>gi|365873799|ref|ZP_09413332.1| putative endoIII-related endonuclease [Thermanaerovibrio velox DSM
12556]
gi|363983886|gb|EHM10093.1| putative endoIII-related endonuclease [Thermanaerovibrio velox DSM
12556]
Length = 242
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 1/169 (0%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
L GL+ TVLSQNT + N KA+ L S FPTW V A + + AI+ GL +KAA I
Sbjct: 52 LGGLILTVLSQNTNDKNRDKAYQELISRFPTWGSVAVAPVEEVAEAIKVAGLGNSKAARI 111
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ IL+ + G +E ++ D ++ L G+G KT ACV++F L FPVDTH
Sbjct: 112 REILEVVRGRFGGYTMEPIKHWPPDRVREFLLSLPGVGAKTTACVMLFDLGIPAFPVDTH 171
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
V +S +G+ P + + L + E + + HG+ +CR
Sbjct: 172 VARLSSRLGFAPLGMEPKDIQVVLEGLLKPERYLGAHVNMICHGRAVCR 220
>gi|392966115|ref|ZP_10331534.1| HhH-GPD family protein [Fibrisoma limi BUZ 3]
gi|387845179|emb|CCH53580.1| HhH-GPD family protein [Fibrisoma limi BUZ 3]
Length = 255
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS TT AN + A+ +++ FPTWE V A + +AI+ KA I+N+
Sbjct: 38 LIGTILSHRTTHANEVTAYRTMRERFPTWEQVRDAPLPDLIDAIKTANYPEVKAPYIQNV 97
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L ++ +G + +++LR LS + L+ GIG KT +L+F+ ++ PVDTHV
Sbjct: 98 LAHIIRERGDVSIDFLRDLSTEAAMKWLTDLPGIGLKTATLLLLFNFRKPVLPVDTHVHR 157
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELK--FDLNCLLYTHGK 247
+++ +G + K Y L +P++ K F+ + Y HG+
Sbjct: 158 VTQRVGLIGPKVSAEKAYAMLLAYLPQDAKDLFNFHKHFYWHGQ 201
>gi|310791057|gb|EFQ26586.1| HhH-GPD superfamily base excision DNA repair protein [Glomerella
graminicola M1.001]
Length = 517
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 131/324 (40%), Gaps = 70/324 (21%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDE-- 76
P+P SRPT EEC+ + D L+ E + + + K T+ + PL +
Sbjct: 128 PFPDWSRPTPEECQAVYDILV-------EEYEEKQKARKETATQSEKYAPLSFTPPAKIQ 180
Query: 77 ---------GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT------------WE 115
GE ++D +++T++SQ+ T ++ + + F W
Sbjct: 181 PPSTTVAGCGEVPDLVDAMMRTLISQSVTRDSANMVVERIIARFGQLDPQGIGAASIDWN 240
Query: 116 HVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESK---------------------- 153
V A + + + GGL K I+ L +
Sbjct: 241 AVRLAPPEDVIQTLHKGGLQNRKYEGIRGCLDMIYTDNQVRRSAYMDEKETGKVANVPGA 300
Query: 154 -----------------GKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD 196
G L L+++R + D++ L+++ IG KT AC+L+F LQ
Sbjct: 301 AEMTTGQKEHQLKKIEAGILTLDHIRAMPSDDVMMALTKYPHIGVKTAACLLLFCLQMPS 360
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKG 256
F VDTHV+ + K + WVP + N Y+H + R+P LK+ L+ L HG C C K
Sbjct: 361 FAVDTHVYRMCKWLYWVPGTENENYVYMHCDLRVPDHLKYGLHQLFIEHGSGCHRC-KGN 419
Query: 257 GNRQRKESAGNLCPLLNYCEKSNK 280
++ E +CPL + ++ K
Sbjct: 420 TSKGTTEWDKAVCPLEHLLDRYGK 443
>gi|269925878|ref|YP_003322501.1| HhH-GPD family protein [Thermobaculum terrenum ATCC BAA-798]
gi|269789538|gb|ACZ41679.1| HhH-GPD family protein [Thermobaculum terrenum ATCC BAA-798]
Length = 236
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 15/207 (7%)
Query: 74 YDEGEEESVLDG---LVKTVLSQNTTEANSLKAFASLKSTF-PTWEHVLAAEQKCIENAI 129
Y E S LD L+ T+LSQ+T++ NS AF L F W+ V+ A + + I
Sbjct: 26 YGNPEWVSRLDPVSELILTILSQHTSDKNSGAAFDRLYDHFNGDWKRVMEAPTEEVAQLI 85
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
+ GL+ KA I+++LK + G L++L+ + I+ K L+ G+GPKT ACVLM
Sbjct: 86 KSAGLSNIKAPRIQSVLKEIWSRLGSFDLQFLKDMPINAAKEWLTSINGVGPKTAACVLM 145
Query: 190 FHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG-KL 248
F L PVDTHV +S +G +P + ++ + L Q + E + + L HG ++
Sbjct: 146 FSLGLPVMPVDTHVHRVSLRLGLIPPKTNADRAHDILAQIVSPERAYPFHINLIRHGRRV 205
Query: 249 CRNCIKKGGNRQRKESAGNLCPLLNYC 275
C+ + K +CPL C
Sbjct: 206 CKAPVPK----------CTICPLTCLC 222
>gi|116193597|ref|XP_001222611.1| hypothetical protein CHGG_06516 [Chaetomium globosum CBS 148.51]
gi|88182429|gb|EAQ89897.1| hypothetical protein CHGG_06516 [Chaetomium globosum CBS 148.51]
Length = 549
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 121/293 (41%), Gaps = 57/293 (19%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
PYP PT E C + L +H +T+ K + GE
Sbjct: 228 PYPYRRVPTPEACEEVHRILTEMH---------------DKVTQPKEMPLASLEVAGCGE 272
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----------TWEHVLAAEQKCIEN 127
VLD L++T++S NT + A +L + WE V + +
Sbjct: 273 VPCVLDALLRTLISGNTLMELANTAIQNLVRYYGRGQVGTSAGSINWEKVRLSTHAELTQ 332
Query: 128 AIRCGGLAPTKAACIKNILKCLLESK----------------------GK-----LCLEY 160
I+ G P ++ IK IL + E GK L L++
Sbjct: 333 VIKVAGNGPNRSQHIKRILDMVHEENVQRAKMQRPETEAGQTQAVAEAGKTALHLLSLDH 392
Query: 161 LRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRN 220
+R +S DE A+ + GIG KT ACV +F LQ+ F VDTHV + + +GWVP AD +
Sbjct: 393 MRAMSKDEAMAKFLSYPGIGIKTAACVTLFCLQKPCFAVDTHVHKFCRWLGWVPDKADPD 452
Query: 221 KTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIK--KGGNRQRKESAGNLCPL 271
+ H + +P LK+ L+ L HG+ C C K K G + E+ CPL
Sbjct: 453 NCFRHGDFMVPDHLKYGLHQLFIRHGQTCFKCKKATKPGTKDWNEAPD--CPL 503
>gi|390556756|ref|ZP_10243163.1| DNA-(Apurinic or apyrimidinic site) lyase [Nitrolancetus
hollandicus Lb]
gi|390174670|emb|CCF82450.1| DNA-(Apurinic or apyrimidinic site) lyase [Nitrolancetus
hollandicus Lb]
Length = 247
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 87/166 (52%), Gaps = 1/166 (0%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
L L+ T+LSQ+T++ NS +AF L+ +PTWE V A + +AIR GGL KA I
Sbjct: 43 LAELILTILSQHTSDVNSERAFQDLRRRYPTWEAVRTAPVADVADAIRSGGLGARKAPRI 102
Query: 143 KNIL-KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
+ L + L L+ L + E KA L G+GPKT ACVL+F + PVDT
Sbjct: 103 QAALDRILSHGTEDEWSRALKTLPLAEAKARLMALPGVGPKTAACVLLFACGRPALPVDT 162
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
HV+ +SK +G + + + + + + E + + + HG+
Sbjct: 163 HVYRVSKRLGLIEPVVTAEQAHDQIEKLLNPEDVYSFHLNMIAHGR 208
>gi|385802541|ref|YP_005838941.1| DNA-(apurinic or apyrimidinic site) lyase [Haloquadratum walsbyi
C23]
gi|339728033|emb|CCC39154.1| endonuclease III [Haloquadratum walsbyi C23]
Length = 223
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 1/163 (0%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LSQ+ +A + +A +L +P + + A + + + I GL KAA I+
Sbjct: 31 LLGTILSQSVADAQTARATHALFEAYPDYRAMETAPHEELADVIEVAGLKNQKAARIQRA 90
Query: 146 LKCLL-ESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E+ G+ L +L S + ++ L+ +G+GPKT + VL FH ++ F VDTHV
Sbjct: 91 LTAIRKETGGEYTLMFLANQSTEAAQSWLTDIKGVGPKTASVVLNFHFEKPTFAVDTHVE 150
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
++K G + + A + + LN+ +P +LK+ L+ L+ THG+
Sbjct: 151 RLAKRFGLLDSTASNKRAHTELNELVPDDLKYSLHVLMITHGR 193
>gi|395217179|ref|ZP_10401538.1| HhH-GPD family protein [Pontibacter sp. BAB1700]
gi|394455098|gb|EJF09644.1| HhH-GPD family protein [Pontibacter sp. BAB1700]
Length = 235
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 10/186 (5%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ T+LS T A+ +A+ ++ F WE VL A + + +A+ KA
Sbjct: 33 SHMHELISTMLSHRTNHADEQQAYYTMLERFGDWEGVLNAPEDELADAVSTTRYPLQKAP 92
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
I+ L+ + E +G++ +++L L IDE A L+R G+GPKT +L+F+ ++ PVD
Sbjct: 93 QIQQTLRMIKEDRGEINIDFLADLPIDEAMAWLTRLPGVGPKTATLLLLFNFKKPVLPVD 152
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELK--FDLNCLLYTHGK--------LCR 250
THVF +S+ +G + NK + L + +PK+ F+ + L+ HG+ C
Sbjct: 153 THVFRVSQRVGLIGAKITANKAHDVLLEMLPKDATELFNFHKHLFWHGQKVCTWSYPKCE 212
Query: 251 NCIKKG 256
C+ G
Sbjct: 213 KCVLNG 218
>gi|397691245|ref|YP_006528499.1| HhH-GPD family protein [Melioribacter roseus P3M]
gi|395812737|gb|AFN75486.1| HhH-GPD family protein [Melioribacter roseus P3M]
Length = 221
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 3/169 (1%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
+D L+ T+LSQNT + NS +A+ +LK + W ++ A K IE I+ GL KA I
Sbjct: 18 VDLLIATILSQNTNDNNSYEAYQNLKRKYSDWNQLVKAPLKEIEKTIKKAGLTNQKAGAI 77
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
KN++ L +L +++++ + E L+ F+GIG KT +CVL+F L ++ PVDTH
Sbjct: 78 KNLV-VNLSRDNRLDMKFIKKMDNKEALEYLTSFKGIGIKTASCVLLFSLYRNVCPVDTH 136
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
V IG V + KT+L +N+ +P+ + L+ L G+ +CR
Sbjct: 137 VHRTLNRIGIVNEKSPE-KTFLRINENLPEGIAHSLHTNLIKLGRGICR 184
>gi|282164121|ref|YP_003356506.1| putative endonuclease III [Methanocella paludicola SANAE]
gi|282156435|dbj|BAI61523.1| putative endonuclease III [Methanocella paludicola SANAE]
Length = 225
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 92/166 (55%), Gaps = 2/166 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LSQNTT+ NS AF L S + T + + A + I I+ GGL KA IK I
Sbjct: 32 LINTILSQNTTDRNSSVAFQRLFSVYDTPKKLANAPEDKIAELIKIGGLYTIKARRIKEI 91
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ +L+ G ++++ + + + EL G+GPKT CVL+F D PVDTHVF
Sbjct: 92 SRLILDDYGG-DIDFVCTANPEAARKELLSIEGVGPKTADCVLLFACGDDVIPVDTHVFR 150
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
++K +G VP AD +T+ L + +P + ++ L G+ +CR
Sbjct: 151 VTKRLGIVPEKADHEETHRILMENVPAGKRGSVHVDLIRFGREICR 196
>gi|110667125|ref|YP_656936.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Haloquadratum walsbyi DSM 16790]
gi|109624872|emb|CAJ51281.1| endonuclease III [Haloquadratum walsbyi DSM 16790]
Length = 223
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 1/163 (0%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LSQ+ +A + +A +L +P + + A + + + I GL KAA I+
Sbjct: 31 LLGTILSQSVADAQTARATHALFEAYPDYRAMETAPHEELADIIEVAGLKNQKAARIQRA 90
Query: 146 LKCLL-ESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
L + E+ G+ L +L S + ++ L+ +G+GPKT + VL FH ++ F VDTHV
Sbjct: 91 LTAIRKETGGEYTLMFLANQSTEAAQSWLTDIKGVGPKTASVVLNFHFEKPTFAVDTHVE 150
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
++K G + + A + + LN+ +P +LK+ L+ L+ THG+
Sbjct: 151 RLAKRFGLLDSTASNKRAHTELNELVPDDLKYSLHVLMITHGR 193
>gi|298252264|ref|ZP_06976067.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
gi|297546856|gb|EFH80724.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
Length = 242
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 20/209 (9%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
L GLV T+LSQ+T++ NS +A+ L F TWE V A + AI+ GGLA KA I
Sbjct: 34 LGGLVGTILSQHTSDINSGRAYHQLIERFSTWEEVRDAPTHEVAEAIKSGGLANVKAPRI 93
Query: 143 KNILKCLLE---------SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
++ L L E S + L+G ++E L + G+GPKT ACVL+F++
Sbjct: 94 QSALHTLSEWQRAKGDTRSLSAFLQDELKGQPLEEAWRYLQQMPGVGPKTAACVLLFNMG 153
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNC 252
+ P+DTH+ ++ +G + ++ + + +P E + L+ L HG+ +C
Sbjct: 154 RPLMPIDTHLHRLTHRLGLIGPKVSADQAHTIFLKALPPEWAYTLHVNLIRHGRTIC--- 210
Query: 253 IKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
+ QR + CPLL+ C +
Sbjct: 211 -----HAQRPKCPQ--CPLLSECAYAGSV 232
>gi|225683840|gb|EEH22124.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 451
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 103/240 (42%), Gaps = 64/240 (26%)
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCI 125
GE SVLD L++T+LS T+ N+ A L S F W+ V A + +
Sbjct: 174 GEVPSVLDALIRTLLSGATSSNNAALALQGLVSRFGVLHDGVGEGSVDWDKVRQATLEEV 233
Query: 126 ENAIRCGGLAPTKAACIKNILKCL------------------LESKGK-----LCLEYLR 162
NA++ GGL K+ IK IL + E G L L +L
Sbjct: 234 YNAMKAGGLGRVKSRYIKRILDMVHEEGVARRNAMGMGGDIYQEGDGNGHEHILSLNHLH 293
Query: 163 GLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTA------ 216
LS DE E +++ GIG KT ACV++F L+Q F VDTHV + K +GW+P
Sbjct: 294 TLSKDEAMLEFTKYPGIGVKTAACVILFCLRQPCFAVDTHVVRLCKWLGWLPEEKHGANE 353
Query: 217 ----------ADRNK--------------TYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
+NK + HL+ ++P LK+ L+ L HGK C C
Sbjct: 354 EEKAEKGNGLGGQNKMRKPRGVVRVNEITAFRHLDAKVPDHLKYSLHQLFVMHGKSCARC 413
>gi|407929765|gb|EKG22575.1| hypothetical protein MPH_00043 [Macrophomina phaseolina MS6]
Length = 342
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 107 LKSTFPT---WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRG 163
+K+T+ + ++++ A + ++ IRCGGL K I +IL+ + G+ L++L
Sbjct: 1 MKNTYGSVFAYDNIYAGGPEKLQETIRCGGLHVRKTRIIMSILEEVRRRHGRWDLDHLLD 60
Query: 164 LSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTY 223
S ++ EL ++ IGPK+ V+ + L+++ F VDTHV+ I+ GW P A R KT
Sbjct: 61 ASDEDAMKELMSYKYIGPKSAFVVMGWCLKRNRFTVDTHVYRIAGLWGWRPKEATREKTQ 120
Query: 224 LHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNR 259
HL+ IP ELKF L+ L HG+ C C +GG++
Sbjct: 121 SHLDAVIPVELKFKLHFFLIQHGRTCPAC--RGGSK 154
>gi|226293223|gb|EEH48643.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 519
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 103/240 (42%), Gaps = 64/240 (26%)
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-----------WEHVLAAEQKCI 125
GE SVLD L++T+LS T+ N+ A L S F W+ V A + +
Sbjct: 242 GEVPSVLDALIRTLLSGATSSNNAALALQGLVSRFGVLHDGVGEGSVDWDKVRQATLEEV 301
Query: 126 ENAIRCGGLAPTKAACIKNILKCL------------------LESKGK-----LCLEYLR 162
+A++ GGL K+ IK IL + E G L L +L
Sbjct: 302 YDAMKAGGLGRVKSRYIKRILDMVHEEGVARRNAMGMGGDVYQEGDGNGHEHILSLNHLH 361
Query: 163 GLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTA------ 216
LS DE E +++ GIG KT ACV++F L+Q F VDTHV + K +GW+P
Sbjct: 362 TLSKDEAMLEFTKYPGIGVKTAACVILFCLRQPCFAVDTHVVRLCKWLGWLPEEKHGANE 421
Query: 217 ----------ADRNK--------------TYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
+NK + HL+ ++P LK+ L+ L HGK C C
Sbjct: 422 EEKAEKGNGLGGQNKMRKPRDVVRVNEITAFRHLDAKVPDHLKYSLHQLFVMHGKSCARC 481
>gi|284036648|ref|YP_003386578.1| HhH-GPD family protein [Spirosoma linguale DSM 74]
gi|283815941|gb|ADB37779.1| HhH-GPD family protein [Spirosoma linguale DSM 74]
Length = 241
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 2/164 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS TT AN + A+ +++ FP WE V A + +AIR KA I+N+
Sbjct: 37 LIGTILSHRTTHANEVMAYRTMRERFPQWEQVRDAPLPDLIDAIRSANYPEIKAPYIQNL 96
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L L G+ +++L LS ++ A L++ GIG KT +L+F Q+ PVDTHV
Sbjct: 97 LTHLFRETGQANVDFLGQLSTEDAMAWLTKLPGIGMKTATILLLFKFQKPVLPVDTHVHR 156
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKE--LKFDLNCLLYTHGK 247
+++ +G + K + L +P + + F+ + Y HG+
Sbjct: 157 VTQRLGLIGPKVSAEKAHTILLSYLPLDALVLFNFHKHFYWHGQ 200
>gi|320334742|ref|YP_004171453.1| iron-sulfur cluster loop [Deinococcus maricopensis DSM 21211]
gi|319756031|gb|ADV67788.1| iron-sulfur cluster loop [Deinococcus maricopensis DSM 21211]
Length = 247
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 5/169 (2%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIR--CGGLAPTKAA 140
LD L++ VL+Q T A + + +A+L+ +PTW+ LA IE +R GGLA KA
Sbjct: 51 LDDLIEAVLNQQNTRATTERQYAALRRAYPTWDAALADGPDGIEAVLRDAGGGLARVKAD 110
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ NIL LLE +G L L++LR L + + L G+G KT + +L+F L + PVD
Sbjct: 111 YVWNILYALLE-RGDLSLQHLRHLDDADARTALESLPGVGMKTASALLLFDLARPAMPVD 169
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKEL--KFDLNCLLYTHGK 247
H+ +SK + +P + K ++ +P++ ++ + HG+
Sbjct: 170 GHIDRVSKRLHLIPERWNVLKAERWYDEVLPRDWAQRYAYHVATIRHGR 218
>gi|424814711|ref|ZP_18239889.1| putative EndoIII-related endonuclease [Candidatus Nanosalina sp.
J07AB43]
gi|339758327|gb|EGQ43584.1| putative EndoIII-related endonuclease [Candidatus Nanosalina sp.
J07AB43]
Length = 239
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LSQN + N+ +A +L + + ++ + ++ + + I GL TKA +K
Sbjct: 36 LLITILSQNVADENTARAAENLFNEYKNYKEIENSDVGRLADTINPAGLPQTKAQRLKRT 95
Query: 146 LKCLLE--SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
L L E K +++L + + L + +GIGPKT + +L FH D PVDTHV
Sbjct: 96 LTALREHGEKEDYSVDFLGDMEDSNAQEWLEQIKGIGPKTASVLLNFHFDADVIPVDTHV 155
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKE 263
ISK +P +A K + LN+ +P ++K + L+ HGK NC R
Sbjct: 156 ERISKRFRLIPFSASNQKAHDLLNESVPHDIKNSFHKLVIEHGK--NNCTA------RNP 207
Query: 264 SAGNLCPLLNYCEK 277
+ GN L YC +
Sbjct: 208 TCGN-TKLKKYCSR 220
>gi|284042265|ref|YP_003392605.1| DNA-(apurinic or apyrimidinic site) lyase [Conexibacter woesei DSM
14684]
gi|283946486|gb|ADB49230.1| DNA-(apurinic or apyrimidinic site) lyase [Conexibacter woesei DSM
14684]
Length = 241
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 106/233 (45%), Gaps = 37/233 (15%)
Query: 24 SRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVL 83
+RPT IRD+L ++G P +P E L
Sbjct: 19 TRPTRRRVNAIRDKLRDVYGIP--------------------IMP---------PHEQPL 49
Query: 84 DGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
D LV TVLSQ+T + N A+ L+ F W VL A +E AIR GG++ K+ I+
Sbjct: 50 DELVLTVLSQSTNDRNRDVAYERLRERFADWRAVLEAPNAEVEEAIRPGGISKVKSKRIQ 109
Query: 144 NILKCLLESK--GKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
IL+ + +S L L +LR S+ + + L G+G KT ACVL+F D PVDT
Sbjct: 110 QILRAIDDSPEGAGLDLSFLRDASVPDGQRYLCSLPGVGRKTAACVLLFAYGLRDVPVDT 169
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPK--ELKFDLNCLLYTHGKLCRNC 252
HV + + + A + + + P+ EL+F +N L HG+ R C
Sbjct: 170 HVSRVGMRLRLLRPGAPFEELHDEMLDLSPRGQELEFHVN--LLRHGR--RTC 218
>gi|380486103|emb|CCF38925.1| HhH-GPD family base excision DNA repair protein [Colletotrichum
higginsianum]
Length = 552
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 130/330 (39%), Gaps = 69/330 (20%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSV----------- 67
P+P S PTAEEC+ + D L+ + + + +++ +K +V
Sbjct: 129 PFPDWSGPTAEECQTVYDILVKEYEEKQKARQEEDKQSGGENAEEKTTVQRKKYTSLSFK 188
Query: 68 ------PLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-------- 113
P GE ++D +++T++SQ+ T ++ K ++ + F
Sbjct: 189 PPAKIQPPSTTVAGCGEVPDLVDAMMRTLISQSVTRESANKVVENIIARFGQGNCQDIRT 248
Query: 114 ----WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESK---------------- 153
W V A + ++ GGL K IK L + E
Sbjct: 249 GSIDWSAVRLAAPDDVIKTLQKGGLQNKKYEAIKGCLDMIYEENQARRAAYLRERETGEV 308
Query: 154 -----------------------GKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF 190
G L L+++R + +E +++ IG KT AC+L+F
Sbjct: 309 SEMPGAAEMTTGQKEHQLSKIEAGVLTLDHIRAMPANEAMLAITKHPQIGVKTAACLLLF 368
Query: 191 HLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCR 250
LQ F VDTHV + K + WVP + ++H + R+P LK+ L+ L HG C
Sbjct: 369 CLQMPSFAVDTHVHRLCKWLYWVPGTENETYVHMHCDVRVPDHLKYGLHQLFIEHGSGCH 428
Query: 251 NCIKKGGNRQRKESAGNLCPLLNYCEKSNK 280
C K ++ E +CPL + ++ K
Sbjct: 429 RC-KGNTSKGTAEWDKTVCPLEHLLDRYTK 457
>gi|298242385|ref|ZP_06966192.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
gi|297555439|gb|EFH89303.1| HhH-GPD family protein [Ktedonobacter racemifer DSM 44963]
Length = 245
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 11/196 (5%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
+ LV +LS T + + +A+L F +WE V A K +E I KA I
Sbjct: 50 MSMLVDILLSHRTRDEQTAAGYANLIKRFGSWEGVRDAPTKEVEETIANVNFPEVKAPRI 109
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ I++ + E +G L L++L L ++E A L+RF+GIGPKT ACVL+F + PVD H
Sbjct: 110 QAIMRQITEERGNLNLDFLCSLPVEEAAAWLNRFQGIGPKTTACVLLFSCKMPILPVDIH 169
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELK--FDLNCLLYTHGKLCRNCIKKGGNRQ 260
V S IG + + + L +P + + ++ + L G+ R C+ + R
Sbjct: 170 VHRTSIRIGLIGNKVTADNAHTLLQALLPNDARTIYNFHKGLLRLGQ--RICVYE---RP 224
Query: 261 RKESAGNLCPLLNYCE 276
R N CPL C+
Sbjct: 225 R----CNQCPLTKLCD 236
>gi|226356223|ref|YP_002785963.1| DNA-(apurinic or apyrimidinic site) lyase [Deinococcus deserti
VCD115]
gi|226318213|gb|ACO46209.1| putative DNA-(apurinic or apyrimidinic site) lyase (Endonuclease
III) [Deinococcus deserti VCD115]
Length = 237
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC--GGLAP 136
E VLD L++T+L Q T A + + F +LKS +P WE L IE +R GGLA
Sbjct: 19 ERQVLDALIRTLLGQQNTSAVATRQFNALKSAYPRWEAALLDGPDGIETVLRAAGGGLAQ 78
Query: 137 TKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD 196
KA I IL L E G L L +R L+ E + L G+G KT + +L+F L +
Sbjct: 79 MKAGYIHGILVHLDERLGTLDLSAVRKLNDQEARTLLEGLPGVGMKTASLILLFDLLRPA 138
Query: 197 FPVDTHVFEISKAIGWVP 214
PVDT++ I+K + VP
Sbjct: 139 LPVDTNIERIAKRLELVP 156
>gi|386857015|ref|YP_006261192.1| Endonuclease III [Deinococcus gobiensis I-0]
gi|380000544|gb|AFD25734.1| Endonuclease III, putative [Deinococcus gobiensis I-0]
Length = 213
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 23/197 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIR--CGGLAPTKAACIK 143
+++T+L+Q T A + + + +L T+P WE L IE +R GGL KA +
Sbjct: 1 MLRTILAQQNTRAVATRQWEALTLTYPVWEAALLDGPDGIETTLRRAGGGLTRIKADYLY 60
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
IL L S+G+L L +L L +E +A L G+G +T + VL+F L + PVDT++
Sbjct: 61 GILAALEGSRGELSLRFLHDLGDEEARAVLEGLPGVGQRTASLVLLFDLVRPAMPVDTNI 120
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPK--ELKFDLNCLLYTHG--------KLCRNCI 253
++ + VP N+T Q I + E ++ L+ HG LC C+
Sbjct: 121 ARMAARLDLVPETWSTNRTEAWFGQVIARDWETRYALHLSGVRHGHETCTPRRPLCGRCV 180
Query: 254 KKGGNRQRKESAGNLCP 270
+ +LCP
Sbjct: 181 LR-----------DLCP 186
>gi|304314918|ref|YP_003850065.1| endonuclease III [Methanothermobacter marburgensis str. Marburg]
gi|302588377|gb|ADL58752.1| endonuclease III [Methanothermobacter marburgensis str. Marburg]
Length = 215
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 96/192 (50%), Gaps = 21/192 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L++T+LSQ T + N+ +A A L S +PT E V A + +E +R G KA I+ +
Sbjct: 32 LIRTILSQRTRDENTDEATARLFSEYPTMEDVAYAPVEKLEQLVRKAGFYHVKARRIREV 91
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G G D+I EL + G+G KT CVL++ + PVDTHV
Sbjct: 92 SRILLEEYG--------GRVPDDID-ELLKLPGVGRKTANCVLVYAFNKPVVPVDTHVHR 142
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS IG V T +T L + IP++ +LN L+ G+ +CR G R +
Sbjct: 143 ISNRIGLVNTRTP-EETERVLMEVIPRKYWIELNDLMVQFGQDICRPV----GPRHEE-- 195
Query: 265 AGNLCPLLNYCE 276
CP+ + C+
Sbjct: 196 ----CPIADECD 203
>gi|325283633|ref|YP_004256174.1| iron-sulfur cluster loop [Deinococcus proteolyticus MRP]
gi|324315442|gb|ADY26557.1| iron-sulfur cluster loop [Deinococcus proteolyticus MRP]
Length = 227
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC--GGLAPTKAA 140
LDGL++ +L+Q T A + + + +LK+ +P WE L AE + IE +R GGLA +K+
Sbjct: 27 LDGLIRLILAQQNTWAVAQRQWEALKAAYPHWEAALLAEPEEIETVLRGAGGGLACSKSR 86
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ IL+ L E +G+ L +L L E + L G+G +T + +L+FHL Q VD
Sbjct: 87 AVWGILRRLEEERGRPSLRFLHRLPPAEARTVLQALPGVGQRTASLLLLFHLAQPAAAVD 146
Query: 201 THVFEISKAIGWVPTA--ADRNKTYL 224
+++ + + VP ADR + +L
Sbjct: 147 SNIERLLHRLEVVPPGWKADRQELWL 172
>gi|15678789|ref|NP_275906.1| endonuclease III [Methanothermobacter thermautotrophicus str. Delta
H]
gi|2621854|gb|AAB85267.1| endonuclease III [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 233
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 21/192 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L++T+LSQ T + N+ +A ASL +P+ E V A + IE IR G KA ++ +
Sbjct: 49 LIRTILSQRTRDENTDEATASLFERYPSIEDVAYAPLEEIEALIRKAGFYHVKARRVREV 108
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ +LE EY G D+I EL + G+G KT CVL++ + PVDTHV
Sbjct: 109 SRIILE-------EY-DGKVPDDIN-ELLKLPGVGRKTANCVLVYAFGRPAIPVDTHVHR 159
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS IG V T +T L + IP+E +LN L+ G+ +CR G R +
Sbjct: 160 ISNRIGLVDTRTP-EETERALMKVIPREYWIELNDLMVQFGQDICRPL----GPRHEE-- 212
Query: 265 AGNLCPLLNYCE 276
CP+ ++C+
Sbjct: 213 ----CPIADHCD 220
>gi|15805952|ref|NP_294652.1| endonuclease III [Deinococcus radiodurans R1]
gi|6458651|gb|AAF10505.1|AE001945_9 endonuclease III, putative [Deinococcus radiodurans R1]
Length = 338
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 20/207 (9%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC--GGLAPTKAA 140
L GL++T+LSQ T + + + L +T+P WE L IE ++ GGL+ KA
Sbjct: 125 LGGLIRTILSQQNTRRVAQRQWEVLTATYPQWEAALLDGPDGIEATLKSAGGGLSRMKAD 184
Query: 141 CIKNILKCLLESKGKLCLEYLRGL-----SIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
I IL L E G L L +LR ++ + L+ G+G KTVA VL+F L++
Sbjct: 185 YIYGILAHLQEHHGGLSLRFLREFPHTPEGHEQARQALAALPGVGHKTVALVLLFDLRRP 244
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPK--ELKFDLNCLLYTHGK-LCRNC 252
PVD ++ +K + VP A + +K + +P E +F L+ HG+ CR+
Sbjct: 245 AMPVDGNMERAAKRLELVPAAWNSHKVERWYAEVMPADWETRFALHISGVRHGRDTCRS- 303
Query: 253 IKKGGNRQRKESAGNLCPLLNYCEKSN 279
K CPL +C ++
Sbjct: 304 ---------KHPLCPQCPLREFCPSAS 321
>gi|448605866|ref|ZP_21658459.1| endonuclease III [Haloferax sulfurifontis ATCC BAA-897]
gi|445741189|gb|ELZ92693.1| endonuclease III [Haloferax sulfurifontis ATCC BAA-897]
Length = 268
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 95/202 (47%), Gaps = 21/202 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTW---EHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A L + + E + AA+++ I +AIR GGL K+ I
Sbjct: 58 LVRTILSQNTSDKASQPAHDELMAQYGGGDLAESLAAADREGIVDAIRSGGLYNQKSNLI 117
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + + +L G Y+R ++ L +G+GPKT CVL+F + FPV
Sbjct: 118 QGVAEEVLADFGSEADFDRYVREEDPATVRDRLLEMKGVGPKTADCVLLFAGGRGGVFPV 177
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE-LKFDLNCLLYTHGKLCR----NCIK 254
DTHV I++ IG P AD L + IP E F ++ + C+ C+
Sbjct: 178 DTHVHRIARRIGLAPADADHEGVRAALERDIPDEKCGFGHTAMIQFGREFCKARTPACLD 237
Query: 255 KGGNRQRKESAGNLCPLLNYCE 276
G CP+ + CE
Sbjct: 238 GPG----------ACPMADVCE 249
>gi|448625246|ref|ZP_21671013.1| endonuclease III [Haloferax denitrificans ATCC 35960]
gi|445749008|gb|EMA00454.1| endonuclease III [Haloferax denitrificans ATCC 35960]
Length = 258
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 97/206 (47%), Gaps = 19/206 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTW---EHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A L + + E + AA+++ I +AIR GGL K+ I
Sbjct: 58 LVRTILSQNTSDKASQPAHDELMAQYGGGDLAESLAAADREGIVDAIRSGGLYNQKSKLI 117
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + + +L G Y+R + ++ L +G+GPKT CVL+F + FPV
Sbjct: 118 QGVAEEVLADFGSEADFDRYVREEAPATVRDRLLEMKGVGPKTADCVLLFAGGRGGVFPV 177
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE-LKFDLNCLLYTHGKLCRNCIKKGGN 258
DTHV I++ IG P AD L + IP E F ++ + C
Sbjct: 178 DTHVHRIARRIGLAPADADHEGVRAALERDIPDEKCGFGHTAMIQFGREFC--------- 228
Query: 259 RQRKES---AGNLCPLLNYCEKSNKT 281
+ RK + CP+ + CE T
Sbjct: 229 KARKPACLDGPEACPMADVCEMVGVT 254
>gi|386855256|ref|YP_006259433.1| Endonuclease III [Deinococcus gobiensis I-0]
gi|379998785|gb|AFD23975.1| Endonuclease III [Deinococcus gobiensis I-0]
Length = 223
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LSQ TT A+ A+ L+ W ++AA + + +AIR +KA I+
Sbjct: 24 LISTILSQRTTHADEEAAYHELRE-LGDWADIIAAPTEVVAHAIRRSNYPESKAPRIQET 82
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L+ + ++ G L++LR L + + L+ G+G KT + VL+F+ + FPVDTHVF
Sbjct: 83 LRRIRDAPGGYDLDFLRDLPVKDALKWLTDLPGVGVKTASLVLLFNYHRPVFPVDTHVFR 142
Query: 206 ISKAIGWVP 214
I+ +G +P
Sbjct: 143 INIRVGTIP 151
>gi|389846321|ref|YP_006348560.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
gi|448616059|ref|ZP_21664769.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
gi|388243627|gb|AFK18573.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
gi|445750714|gb|EMA02151.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mediterranei ATCC 33500]
Length = 268
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 19/202 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPT---WEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A +L + + E + AA+++ I +AIR GGL K+ I
Sbjct: 58 LVRTILSQNTSDKASQPAHDTLMARYGGDDLAESLAAADREGIIDAIRSGGLYNQKSKLI 117
Query: 143 KNILKCLLESKGKL--CLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + + +L G Y+R ++ L +G+GPKT CVL+F + FPV
Sbjct: 118 QGVAEEVLADFGSEDDFDRYVREADPSTVRDRLLEMKGVGPKTADCVLLFAGGRGGVFPV 177
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE-LKFDLNCLLYTHGKLCRNCIKKGGN 258
DTHV I++ +G P AD L + +P E F ++ + C
Sbjct: 178 DTHVHRIARRLGVAPADADHEGVRAALEREVPAEKCGFGHTAMIQFGREFC--------- 228
Query: 259 RQRKE---SAGNLCPLLNYCEK 277
+ RK + CP+ + CEK
Sbjct: 229 KARKPVCLDGKDECPMADVCEK 250
>gi|84489308|ref|YP_447540.1| endonuclease III [Methanosphaera stadtmanae DSM 3091]
gi|84372627|gb|ABC56897.1| putative endonuclease III [Methanosphaera stadtmanae DSM 3091]
Length = 219
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 21/199 (10%)
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
E++ + L++T+LSQ T + N+ KA +L + + T E + A I N +R G K
Sbjct: 33 EQTPYEVLIRTILSQRTRDENTDKATENLFNVYHTMEEIADAPVDDIANLVRQAGFYNVK 92
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
AA IK + LLE EY G+ D ++ EL + G+G KT CVL+F Q+D P
Sbjct: 93 AARIKEVSNILLE-------EY-DGVVPDTLE-ELLKLPGVGRKTANCVLVFGFQKDAIP 143
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGG 257
VD HV IS +G V T + + L + +P+E +N L+ G+ +C K
Sbjct: 144 VDVHVHRISNRLGLVHTDKPEDTEEV-LREIVPQEYWLPINDLMVQFGQNIC-----KPI 197
Query: 258 NRQRKESAGNLCPLLNYCE 276
N Q E CP + C+
Sbjct: 198 NPQHIE-----CPFTDLCQ 211
>gi|393766633|ref|ZP_10355188.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium sp. GXF4]
gi|392727951|gb|EIZ85261.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium sp. GXF4]
Length = 253
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 16/199 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV ++LS T A S +AF +L++ FP WE V+ AE I+ AI KA I+ +
Sbjct: 58 LVSSLLSHRTRNAESGRAFKALRARFPDWESVIDAEVPEIQAAIAGVTWPELKAPRIREV 117
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVF 204
L + E G L L +L + + +A L GIGPKT A VL F L+ PVD+H
Sbjct: 118 LIAVRERCGSLDLAFLGDMDVAAARAWLEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHH 177
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHG-KLCRNCIKKGGNR 259
+++ +G + D ++ L ++P + +D + +L HG ++C +
Sbjct: 178 RVAQRLGLIGPRVDVGPSHAILRAQLPADWSAQALYDNHEILMLHGQQVCHH-------- 229
Query: 260 QRKESAGNLCPLLNYCEKS 278
R+ + G C L++ C +
Sbjct: 230 -RRPACGR-CVLVDLCPSA 246
>gi|218530896|ref|YP_002421712.1| endonuclease III FCL domain-containing protein [Methylobacterium
extorquens CM4]
gi|218523199|gb|ACK83784.1| Endonuclease III FCL domain protein [Methylobacterium extorquens
CM4]
Length = 254
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 14/188 (7%)
Query: 93 QNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLES 152
T A+S +AF +L++ +P W + AA K IE I KA IK +L + E
Sbjct: 66 HRTRNADSGRAFKALRARWPDWTEIDAASVKEIEATIHGVTWPELKAPRIKAVLAAVQER 125
Query: 153 KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVFEISKAIG 211
G L L++L +S+DE + L GIGPKT A VL F L+ PVD+H +++ G
Sbjct: 126 VGALSLDFLGDMSVDEARGWLEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTG 185
Query: 212 WVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
+ D ++ L ++P + +D + +L HG+ R C R + G
Sbjct: 186 LIGAKVDVGPSHAVLRAQLPDDWSAQKLYDNHEVLMLHGQ--RVCF------HRSPACGR 237
Query: 268 LCPLLNYC 275
C LL+ C
Sbjct: 238 -CVLLDIC 244
>gi|448590303|ref|ZP_21650179.1| endonuclease III [Haloferax elongans ATCC BAA-1513]
gi|445734936|gb|ELZ86491.1| endonuclease III [Haloferax elongans ATCC BAA-1513]
Length = 267
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 6/154 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTW---EHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A L F E + AA+++ + AIR GL K+ I
Sbjct: 57 LVRTILSQNTSDKASQPAHDRLMERFGGGDLAESLAAADREALVEAIRSAGLYNQKSKLI 116
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + +L G Y+R + ++ L +G+GPKT CVL+F +D FPV
Sbjct: 117 IGVAEAVLADFGSEADFDTYIREADPETVRERLLEMKGVGPKTADCVLLFAGGRDGVFPV 176
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
DTHV IS+ IG P AD L + +P E
Sbjct: 177 DTHVHRISRRIGLAPADADHEGVRERLERDVPGE 210
>gi|448582052|ref|ZP_21645556.1| endonuclease III [Haloferax gibbonsii ATCC 33959]
gi|445731700|gb|ELZ83283.1| endonuclease III [Haloferax gibbonsii ATCC 33959]
Length = 268
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTW---EHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A L + + E + AA+++ I AIR GGL K+ I
Sbjct: 58 LVRTILSQNTSDKASQPAHDQLMAQYGGGDLAESLAAADREGIVEAIRSGGLYNQKSKLI 117
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + + +L G Y+R ++ L +G+GPKT CVL+F + FPV
Sbjct: 118 QGVAEDVLADFGSEAGFDRYVREEDPSTVRDRLLEMKGVGPKTADCVLLFAGGRGGVFPV 177
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
DTHV I++ IG P AD L + IP E
Sbjct: 178 DTHVHRIARRIGLAPADADHEGVRAALERDIPDE 211
>gi|254561880|ref|YP_003068975.1| hypothetical protein METDI3481 [Methylobacterium extorquens DM4]
gi|254269158|emb|CAX25124.1| hypothetical protein METDI3481 [Methylobacterium extorquens DM4]
Length = 254
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 14/188 (7%)
Query: 93 QNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLES 152
T A+S +AF +L++ +P W + AA + IE I KA IK +L + E
Sbjct: 66 HRTRNADSGRAFKALRARWPDWTEIGAASVEEIETTIHGVTWPELKAPRIKAVLAAVQER 125
Query: 153 KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVFEISKAIG 211
G L L++L +S+DE + L GIGPKT A VL F L+ PVD+H +++ G
Sbjct: 126 VGALTLDFLGDMSVDEARGWLEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTG 185
Query: 212 WVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
+ D ++ L ++P + +D + +L HG+ R C + A +
Sbjct: 186 LIGAKVDVGPSHAVLRAQLPDDWSAQKLYDNHEVLMLHGQ--RVCF-------HRSPACD 236
Query: 268 LCPLLNYC 275
C LL+ C
Sbjct: 237 RCVLLDIC 244
>gi|188582085|ref|YP_001925530.1| HhH-GPD family protein [Methylobacterium populi BJ001]
gi|179345583|gb|ACB80995.1| HhH-GPD family protein [Methylobacterium populi BJ001]
Length = 259
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 14/188 (7%)
Query: 93 QNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLES 152
T A+S +AF +L++ +P W + A + IE IR KA IK +L + E
Sbjct: 66 HRTRNADSGRAFKALRARWPDWAEIEQASVEDIEATIRSVTWPELKAPRIKAVLAAVRER 125
Query: 153 KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVFEISKAIG 211
G L L++L +S+DE + L GIGPKT A VL F L+ PVD+H +++ G
Sbjct: 126 VGALSLDFLGDMSVDEARGWLEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTG 185
Query: 212 WVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
+ + D ++ L ++P + +D + +L HG+ R C A
Sbjct: 186 LIGSKVDVGPSHAVLRAQLPDDWSAQKLYDNHEVLMLHGQ--RVCF-------HHSPACG 236
Query: 268 LCPLLNYC 275
C LL+ C
Sbjct: 237 RCVLLDIC 244
>gi|448572049|ref|ZP_21640138.1| endonuclease III [Haloferax lucentense DSM 14919]
gi|448596871|ref|ZP_21654009.1| endonuclease III [Haloferax alexandrinus JCM 10717]
gi|445721082|gb|ELZ72751.1| endonuclease III [Haloferax lucentense DSM 14919]
gi|445740752|gb|ELZ92257.1| endonuclease III [Haloferax alexandrinus JCM 10717]
Length = 268
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTW---EHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A L + + E + AA+++ I AIR GGL K+ I
Sbjct: 58 LVRTILSQNTSDKASQPAHDELMAQYGGGDLAESLAAADREGIVEAIRSGGLYNQKSKLI 117
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + + +L G Y+R + ++ L +G+GPKT CVL+F + FPV
Sbjct: 118 RGVAEEVLADFGSEADFDRYVREEAPATVRDRLLEMKGVGPKTADCVLLFAGGRGGVFPV 177
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
DTHV I++ IG P AD L + IP E
Sbjct: 178 DTHVHRIARRIGLAPADADHEGVRAALERDIPDE 211
>gi|292655041|ref|YP_003534938.1| endonuclease III [Haloferax volcanii DS2]
gi|448292657|ref|ZP_21483063.1| endonuclease III [Haloferax volcanii DS2]
gi|291372380|gb|ADE04607.1| endonuclease III [Haloferax volcanii DS2]
gi|445572413|gb|ELY26953.1| endonuclease III [Haloferax volcanii DS2]
Length = 268
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTW---EHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A L + + E + AA+++ I AIR GGL K+ I
Sbjct: 58 LVRTILSQNTSDKASQPAHDELMAQYDGGDLAESLAAADREGIVEAIRSGGLYNQKSKLI 117
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + + +L G Y+R + ++ L +G+GPKT CVL+F + FPV
Sbjct: 118 QGVAEEVLADFGSEADFDRYVREEAPATVRDRLLEMKGVGPKTADCVLLFAGGRGGVFPV 177
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
DTHV I++ IG P AD L + IP E
Sbjct: 178 DTHVHRIARRIGLAPADADHEGVRAALERDIPDE 211
>gi|433424488|ref|ZP_20406484.1| endonuclease III [Haloferax sp. BAB2207]
gi|432198075|gb|ELK54399.1| endonuclease III [Haloferax sp. BAB2207]
Length = 268
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTW---EHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A L + + E + AA+++ I AIR GGL K+ I
Sbjct: 58 LVRTILSQNTSDKASQPAHDELMAQYGGGDLAESLAAADREGIVEAIRSGGLYNQKSKLI 117
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + + +L G Y+R + ++ L +G+GPKT CVL+F + FPV
Sbjct: 118 RGVAEEVLADFGSEADFDRYVREEAPATVRDRLLEMKGVGPKTADCVLLFAGGRGGVFPV 177
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
DTHV I++ IG P AD L IP E
Sbjct: 178 DTHVHRIARRIGLAPADADHEGVRAALEHDIPDE 211
>gi|170751703|ref|YP_001757963.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium radiotolerans JCM 2831]
gi|170658225|gb|ACB27280.1| helix-hairpin-helix motif protein [Methylobacterium radiotolerans
JCM 2831]
Length = 253
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 99/199 (49%), Gaps = 16/199 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV ++LS T A S +AF +L++ F WE V+ A+ IE AI KA I+++
Sbjct: 58 LVSSLLSHRTRNAESGRAFKALRARFRDWEAVIDADVPEIEAAIAGVTWPELKAPRIRDV 117
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVF 204
L+ L + G L L +L + ++ + L G+GPKT A VL F L+ PVD+H
Sbjct: 118 LRALRDRCGGLDLAFLADMEVEAARVWLQAIPGVGPKTSAAVLSFSTLRMPALPVDSHHH 177
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHG-KLCRNCIKKGGNR 259
+++ +G + D ++ L ++P + +D + +L HG K+C +
Sbjct: 178 RVAQRLGLIGKTVDVGPSHPILRAQLPADWSAQDLYDNHEILMLHGQKVCHH-------- 229
Query: 260 QRKESAGNLCPLLNYCEKS 278
R+ + G C L++ C +
Sbjct: 230 -RRPACGR-CVLVDLCPSA 246
>gi|385776592|ref|YP_005649160.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
REY15A]
gi|323475340|gb|ADX85946.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
REY15A]
Length = 233
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 89/179 (49%), Gaps = 12/179 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
LV T+LSQN+T+ ++LKA+ L K T E + A+ IENA++ GL TKA +K
Sbjct: 39 LVATILSQNSTDKSALKAYLELEKKVGVTPEKLSDADLSNIENALKISGLYKTKAKRLKI 98
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
I K +LE L L + E EL +F GIG KT VL+ + FP+DTH+
Sbjct: 99 ISKIILEKYNGLIDNLLNSSNPRE---ELLKFEGIGEKTADVVLLTCRGYEVFPIDTHIT 155
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCIKK 255
+SK +G VP A L + L+ LL HG+ LC +CI K
Sbjct: 156 RVSKRLGIVPMNAKYELISSTLKELFSAYDLLQLHHLLIAHGRQTCKARKPLCNSCIIK 214
>gi|229581431|ref|YP_002839830.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.N.15.51]
gi|228012147|gb|ACP47908.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.N.15.51]
Length = 233
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 89/179 (49%), Gaps = 12/179 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
LV T+LSQN+T+ ++LKA+ L K T E + A+ IENA++ GL TKA +K
Sbjct: 39 LVATILSQNSTDKSALKAYLELEKKVGVTPEKLSDADLSDIENALKISGLYKTKAKRLKI 98
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
I K +LE L L + E EL +F GIG KT VL+ + FP+DTH+
Sbjct: 99 ISKIILEKYNGLIDNLLNSSNPRE---ELLKFEGIGEKTADVVLLTCRGYEVFPIDTHIT 155
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCIKK 255
+SK +G VP A L + L+ LL HG+ LC +CI K
Sbjct: 156 RVSKRLGIVPMNAKYELISSTLKELFSAYDLLQLHHLLIAHGRQICKARKPLCNSCIIK 214
>gi|448306248|ref|ZP_21496157.1| HhH-GPD family protein [Natronorubrum bangense JCM 10635]
gi|445598662|gb|ELY52717.1| HhH-GPD family protein [Natronorubrum bangense JCM 10635]
Length = 270
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 57 KHNMTRDKNSVPLDMNE---YDE-GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP 112
+HN+ +N+V +D +E +D G+ + D LV+T+LSQNT++ S A +L +T+
Sbjct: 25 EHNIDGGQNAVTIDDDESIFWDRTGDRQDAFDCLVRTILSQNTSDKASQPAHDALLATYD 84
Query: 113 T-----WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCL--EYLRGLS 165
E + +A+Q + I GL K+ I + +LE G Y++ +
Sbjct: 85 GDDIDLAESLASADQSMLAETISGAGLYNQKSETIIDTAAWVLEEFGSAAAFDRYVKDET 144
Query: 166 IDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYL 224
++ L RG+GPKT CVL+F + FPVDTHV I + +G P AD
Sbjct: 145 PSVVRETLLSVRGVGPKTADCVLLFSGGRSGVFPVDTHVHRIYRRMGIAPPDADHEAVRE 204
Query: 225 HLNQRI 230
L Q +
Sbjct: 205 TLEQDV 210
>gi|383762204|ref|YP_005441186.1| putative DNA glycosylase [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381382472|dbj|BAL99288.1| putative DNA glycosylase [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 239
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 89/195 (45%), Gaps = 10/195 (5%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTF-PTWEHVLAAEQKCIENAIRCGGLAPTKAAC 141
+D L+ T+LS NT++ANS +AF LK+ F W+ V A I+ AIR G+ KA
Sbjct: 38 VDELIATILSANTSDANSNRAFEQLKARFNGDWDAVRTAPLDAIKEAIRPAGMYNQKAPA 97
Query: 142 IKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
I L+ + G L L ++E L+ G+G KT + V++F FPVDT
Sbjct: 98 IVATLERIKADWGSYDLRPLAQKPVEEAFTYLTSLPGVGHKTASIVILFCFNGAAFPVDT 157
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQR 261
H+ IS+ +G AD I + L+ L HG+ R C Q
Sbjct: 158 HIQRISQRVGISRRRADAYTIKRIWESLIEPSAFYALHINLIRHGR--RTC-------QA 208
Query: 262 KESAGNLCPLLNYCE 276
LCPL + C+
Sbjct: 209 LTPRCELCPLQSMCD 223
>gi|227831027|ref|YP_002832807.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
L.S.2.15]
gi|284998523|ref|YP_003420291.1| HhH-GPD family protein [Sulfolobus islandicus L.D.8.5]
gi|227457475|gb|ACP36162.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
L.S.2.15]
gi|284446419|gb|ADB87921.1| HhH-GPD family protein [Sulfolobus islandicus L.D.8.5]
Length = 233
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 89/179 (49%), Gaps = 12/179 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
LV T+LSQN+T+ ++LKA+ L K T E + A+ IENA++ GL TKA +K
Sbjct: 39 LVATILSQNSTDKSALKAYLELEKKVGVTPEKLSDADLSDIENALKISGLYKTKAKRLKI 98
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
I K +LE L L + E EL +F GIG KT VL+ + FP+DTH+
Sbjct: 99 ISKIILEKYNGLIDNLLNSSNPRE---ELLKFEGIGEKTADVVLLTCRGYEVFPIDTHIT 155
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCIKK 255
+SK +G VP A L + L+ LL HG+ LC +CI K
Sbjct: 156 RVSKRLGIVPMNAKYELISSTLKELFSAYDLLQLHHLLIAHGRQTCKARKPLCNSCIIK 214
>gi|227828269|ref|YP_002830049.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.14.25]
gi|229579909|ref|YP_002838308.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.G.57.14]
gi|238620462|ref|YP_002915288.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.4]
gi|227460065|gb|ACP38751.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.14.25]
gi|228010624|gb|ACP46386.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
Y.G.57.14]
gi|238381532|gb|ACR42620.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.4]
Length = 233
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 89/179 (49%), Gaps = 12/179 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
LV T+LSQN+T+ ++LKA+ L K T E + A+ IENA++ GL TKA +K
Sbjct: 39 LVATILSQNSTDKSALKAYLELEKKVGVTPEKLSDADLSDIENALKISGLYKTKAKRLKI 98
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
I K +LE L L + E EL +F GIG KT VL+ + FP+DTH+
Sbjct: 99 ISKIILEKYNGLIDNLLNSSNPRE---ELLKFEGIGEKTADVVLLTCRGYEVFPIDTHIT 155
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCIKK 255
+SK +G VP A L + L+ LL HG+ LC +CI K
Sbjct: 156 RVSKRLGIVPMNAKYELISSTLKELFSAYDLLQLHHLLIAHGRQTCKARKPLCNSCIIK 214
>gi|448542485|ref|ZP_21624719.1| endonuclease III [Haloferax sp. ATCC BAA-646]
gi|448549955|ref|ZP_21628560.1| endonuclease III [Haloferax sp. ATCC BAA-645]
gi|445707085|gb|ELZ58948.1| endonuclease III [Haloferax sp. ATCC BAA-646]
gi|445713003|gb|ELZ64784.1| endonuclease III [Haloferax sp. ATCC BAA-645]
Length = 270
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTW---EHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A L + + E + AA+++ I AIR GGL K+ I
Sbjct: 58 LVRTILSQNTSDKASQPAHDELMAQYGGGDLAESLAAADREGIIEAIRSGGLYNQKSKLI 117
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + + +L G Y+R + ++ L +G+GPKT CVL+F + FPV
Sbjct: 118 QGVAEEVLADFGSEADFDRYVREEAPATVRDRLLEMKGVGPKTADCVLLFAGGRGGVFPV 177
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE-LKFDLNCLLYTHGKLCRNCIKKGGN 258
DTHV I++ +G P AD L + IP E F ++ + C
Sbjct: 178 DTHVHRIARRMGLAPADADHEGVRAALERDIPDEKCGFGHTAMIQFGREFC--------- 228
Query: 259 RQRKES---AGNLCPLLNYCEK 277
RK + + CPL + C++
Sbjct: 229 TARKPACLDGPDACPLYDLCDR 250
>gi|296081572|emb|CBI20577.3| unnamed protein product [Vitis vinifera]
Length = 282
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 50/65 (76%)
Query: 108 KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSID 167
+S FPTW+ VLAA+ K IENAIR GGLA T+ +CIK +L CLL K KLCL YL L++D
Sbjct: 91 RSAFPTWQDVLAADSKSIENAIRRGGLAVTEVSCIKKMLNCLLGRKCKLCLGYLCDLTVD 150
Query: 168 EIKAE 172
EIKA+
Sbjct: 151 EIKAD 155
>gi|312136836|ref|YP_004004173.1| endonuclease iii ;DNA-(apurinic or apyrimidinic site) lyase
[Methanothermus fervidus DSM 2088]
gi|311224555|gb|ADP77411.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Methanothermus fervidus DSM 2088]
Length = 209
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 92/191 (48%), Gaps = 19/191 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L++T+LSQ T + N+ KA L S + T E + A++K +E I+C G KA IK I
Sbjct: 31 LIETILSQRTKDENTKKASKKLFSKYDTIEKIANAQEKDLEKLIKCVGFYRVKAKRIKKI 90
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+ + L+ EL + G+G KT CVL++ +D PVDTHV
Sbjct: 91 SKILINKYDGKVPKNLK---------ELLKLPGVGRKTANCVLVYGFNEDAIPVDTHVHR 141
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
++ IG V T +T L + IP++ ++N L GK N K + K
Sbjct: 142 VANRIGLVNTKTPE-ETEKTLRKIIPRDYWKEVNKLFVEFGK---NICKPTNPKHEK--- 194
Query: 266 GNLCPLLNYCE 276
CP+ +C+
Sbjct: 195 ---CPIKKFCK 202
>gi|448561313|ref|ZP_21634665.1| endonuclease III [Haloferax prahovense DSM 18310]
gi|445721545|gb|ELZ73213.1| endonuclease III [Haloferax prahovense DSM 18310]
Length = 268
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTW---EHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A L + + E + AA+++ I AIR GGL K+ I
Sbjct: 58 LVRTILSQNTSDKASQPAHDELMAQYGGGDLAESLAAADREGIVEAIRSGGLYNQKSKLI 117
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + + +L G Y+R ++ L +G+GPKT CVL+F + FPV
Sbjct: 118 QGVAEDVLADFGSEADFDRYVREEVPATVRDRLLEMKGVGPKTADCVLLFAGGRGGVFPV 177
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
DTHV I++ IG P AD L + IP E
Sbjct: 178 DTHVHRIARRIGLAPADADHEGVRAALERDIPDE 211
>gi|222444488|ref|ZP_03607003.1| hypothetical protein METSMIALI_00099 [Methanobrevibacter smithii
DSM 2375]
gi|261350964|ref|ZP_05976381.1| endonuclease III [Methanobrevibacter smithii DSM 2374]
gi|222434053|gb|EEE41218.1| endonuclease III [Methanobrevibacter smithii DSM 2375]
gi|288860304|gb|EFC92602.1| endonuclease III [Methanobrevibacter smithii DSM 2374]
Length = 208
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 84/166 (50%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV+T+LSQ T + N+ +A +L + ++ A +E IRC G KAA IK +
Sbjct: 35 LVRTILSQRTRDENTDQATKNLFGKYKNIYEIVDAPTDDVEELIRCSGFYRVKAARIKEV 94
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L++ G G D +K EL G+G KT CVL++ + PVDTHV
Sbjct: 95 SRILIDQYG--------GEVPDNLK-ELVELPGVGRKTANCVLVYAFELPAIPVDTHVHR 145
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS IG V T +T + L + PKEL LN L+ G+ +C+
Sbjct: 146 ISNRIGLVNTKTPE-QTEVELAKIAPKELWIKLNDLMVQFGQTICK 190
>gi|148642332|ref|YP_001272845.1| endonuclease III [Methanobrevibacter smithii ATCC 35061]
gi|148551349|gb|ABQ86477.1| endonuclease III [Methanobrevibacter smithii ATCC 35061]
Length = 210
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 84/166 (50%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV+T+LSQ T + N+ +A +L + ++ A +E IRC G KAA IK +
Sbjct: 37 LVRTILSQRTRDENTDQATKNLFGKYKNIYEIVDAPTDDVEELIRCSGFYRVKAARIKEV 96
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L++ G G D +K EL G+G KT CVL++ + PVDTHV
Sbjct: 97 SRILIDQYG--------GEVPDNLK-ELVELPGVGRKTANCVLVYAFELPAIPVDTHVHR 147
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS IG V T +T + L + PKEL LN L+ G+ +C+
Sbjct: 148 ISNRIGLVNTKTPE-QTEVELAKIAPKELWIKLNDLMVQFGQTICK 192
>gi|325283930|ref|YP_004256471.1| HhH-GPD family protein [Deinococcus proteolyticus MRP]
gi|324315739|gb|ADY26854.1| HhH-GPD family protein [Deinococcus proteolyticus MRP]
Length = 248
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 4/164 (2%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LSQ T + A+A L+ W+ ++AA + + +AIR KA I+
Sbjct: 53 LISTILSQRTNWRDEDAAYAELR-MLGDWDAIVAAPVEQVAHAIRRSNYPDQKAPRIQAT 111
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L+ + E +G L++L L + E + L+ G+G KT + VL+F+ + FPVDTHV
Sbjct: 112 LRAIREKRGGYDLDFLAELPVAEALSWLTDLPGVGVKTASLVLLFNYARPVFPVDTHVHR 171
Query: 206 ISKAIGWVPTAADR--NKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I+ +G +P ++ ++ L L P L +DL+ L HG+
Sbjct: 172 INTRVGTIPKMGEQTAHRALLTLLPSDPP-LLYDLHVNLLKHGQ 214
>gi|229585498|ref|YP_002844000.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.27]
gi|228020548|gb|ACP55955.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
M.16.27]
Length = 233
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 88/179 (49%), Gaps = 12/179 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
LV T+LSQN+T+ ++LKA+ L K T E + A IENA++ GL TKA +K
Sbjct: 39 LVATILSQNSTDKSALKAYLELEKKVGVTPEKLSDANLSDIENALKISGLYKTKAKRLKI 98
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
I K +LE L L + E EL +F GIG KT VL+ + FP+DTH+
Sbjct: 99 ISKIILEKYNGLIDNLLNSSNPRE---ELLKFEGIGEKTADVVLLTCRGYEVFPIDTHIT 155
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCIKK 255
+SK +G VP A L + L+ LL HG+ LC +CI K
Sbjct: 156 RVSKRLGIVPMNAKYELISSTLKELFSAYDLLQLHHLLIAHGRQTCKARKPLCNSCIIK 214
>gi|380490652|emb|CCF35867.1| base excision DNA repair protein [Colletotrichum higginsianum]
Length = 143
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 61/113 (53%)
Query: 151 ESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAI 210
E GK L++L S +E E+ + G+GPK C+L L++D F VDTH++ I+
Sbjct: 9 ERHGKWDLQHLFNASDEEAVKEVVSYWGLGPKCAFCLLSICLKRDAFAVDTHIYRITGLW 68
Query: 211 GWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKE 263
GW P A + HL+ RIP E+K+ L+ HG+ C C G ++ R E
Sbjct: 69 GWRPKDASKELAQAHLDARIPNEIKYALHYQFIVHGRQCPACRGNGDSKARCE 121
>gi|333987518|ref|YP_004520125.1| HhH-GPD family protein [Methanobacterium sp. SWAN-1]
gi|333825662|gb|AEG18324.1| HhH-GPD family protein [Methanobacterium sp. SWAN-1]
Length = 212
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 21/195 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L++T+LSQ T + N+ A ASL + +PT + A + IE I+ G KA +K +
Sbjct: 33 LIRTILSQRTRDENTDAASASLFARYPTARLIADAPIENIEILIKKSGFYHVKAKRVKEV 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K + E + + ++ EL G+G KT CVL++ +D PVD HV
Sbjct: 93 SKIIHEEYDDVVPDDMK---------ELLSLPGVGRKTANCVLVYGFHKDAIPVDVHVHR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS IG V T +T + L + +P++ LN LL G+ +CR K
Sbjct: 144 ISNRIGLVDTKTP-EQTEVELMKTVPRKYWLPLNDLLVQFGQTICRPIGPK--------- 193
Query: 265 AGNLCPLLNYCEKSN 279
+CP+ + C+ N
Sbjct: 194 -HEICPIADLCDYYN 207
>gi|325958693|ref|YP_004290159.1| DNA-(apurinic or apyrimidinic site) lyase [Methanobacterium sp.
AL-21]
gi|325330125|gb|ADZ09187.1| DNA-(apurinic or apyrimidinic site) lyase [Methanobacterium sp.
AL-21]
Length = 216
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 94/207 (45%), Gaps = 19/207 (9%)
Query: 70 DMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
D+ E E+ L++T+LSQ T + N+ A A L S + T E + A + +E I
Sbjct: 18 DIYTLREFEDSDPFRVLIRTILSQRTRDENTDAASAMLFSKYSTPEEIANAPTEEVEKLI 77
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
+ G KA+ ++ + + + E ++ E AEL G+G KT CVL+
Sbjct: 78 KKSGFYHVKASRVREVSRIIHEDYND---------TVPEDMAELLSLPGVGRKTANCVLV 128
Query: 190 FHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC 249
+ +D PVD HV IS IG V T ++T L + +PK+ LN L G+
Sbjct: 129 YGFHKDAIPVDVHVHRISNRIGLVNTGTP-DETEEKLMKIVPKKFWLPLNDLFVQFGQTI 187
Query: 250 RNCIKKGGNRQRKESAGNLCPLLNYCE 276
C G + +CP+ YC+
Sbjct: 188 --CKPIGPKHE-------ICPIAEYCD 205
>gi|115375240|ref|ZP_01462505.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
gi|310820220|ref|YP_003952578.1| endonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|115367707|gb|EAU66677.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
gi|309393292|gb|ADO70751.1| Endonuclease III (DNA-(Apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
Length = 237
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 15/204 (7%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
L LV +LS T A+S +AF L++ F TWE V A ++ AI KA +
Sbjct: 38 LSELVSALLSHRTRNADSGRAFRQLRARFVTWEAVRDAPCAEVQEAIAPVTWPEQKAPRL 97
Query: 143 KNILKCLLESK-GKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF-HLQQDDFPVD 200
++IL+ + + G + L++L L + + +A L G+GPKT A VL+F L++ PVD
Sbjct: 98 QHILREITARRGGDMALDFLGALPVPQARAWLESLPGVGPKTSAAVLLFSRLRRPALPVD 157
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHGKLCRNCIKKG 256
+H + ++ +G + ++ L +P+E +D + +L HG+ C C +
Sbjct: 158 SHHYRVAVRLGLLSARIPVGPSHALLAALLPQEWGAQQVYDHHEVLMLHGQRC--CYHQS 215
Query: 257 GNRQRKESAGNLCPLLNYCEKSNK 280
A CP+L C +
Sbjct: 216 -------PACGRCPVLELCPHGQE 232
>gi|412985467|emb|CCO18913.1| predicted protein [Bathycoccus prasinos]
Length = 2056
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 26/179 (14%)
Query: 114 WEHVL--AAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKA 171
W VL A+ IE IRC G+ A IK IL+ +L+ +G L LE+LR S +E A
Sbjct: 1127 WHRVLHEASIDDIIE-CIRCRGMHSMLAHRIKKILRRVLDERGVLSLEFLREASTEEANA 1185
Query: 172 ELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAAD-----------RN 220
L+ G+G KT ACV + L+ DFPVD +V I +GWVP D
Sbjct: 1186 YLNEIEGMGAKTSACVNLLSLENRDFPVDVNVGRIMARLGWVPLEDDFKLELLEQYAPEE 1245
Query: 221 KTYLHLNQRIPK---ELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
Y L++R+ + ++L+ + T GK+ C K+ N CP+ + CE
Sbjct: 1246 SVYEFLSERLNTFDVTMLYELHYHMITLGKVF--CAKRDPN-------CASCPMNSDCE 1295
>gi|170741581|ref|YP_001770236.1| helix-hairpin-helix DNA-binding motif-containing protein
[Methylobacterium sp. 4-46]
gi|168195855|gb|ACA17802.1| helix-hairpin-helix motif [Methylobacterium sp. 4-46]
Length = 239
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 14/188 (7%)
Query: 93 QNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLES 152
T A S +AF +L++ +P W ++AA +E I KA ++ +L+ + E
Sbjct: 43 HRTRNAESGRAFKALRARYPDWAELIAAPVAEVEAVITGVTWPEQKAPRLQAVLRAVRER 102
Query: 153 KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVFEISKAIG 211
G L L++LR L + +A L GIGPKT A VL F L++ PVD+H +++ +G
Sbjct: 103 HGSLSLDFLRDLDVASARAWLEAIPGIGPKTSAAVLSFSTLRRPALPVDSHHHRVAQRLG 162
Query: 212 WVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
+ D + L ++P+ +D + ++ HG+ C C + A
Sbjct: 163 LIGPKVDVGPAHAILRAQLPEAWSAQDLYDNHEVMMLHGQRC--CFHRA-------PACG 213
Query: 268 LCPLLNYC 275
C LL+ C
Sbjct: 214 TCVLLDLC 221
>gi|240139469|ref|YP_002963944.1| hypothetical protein MexAM1_META1p2915 [Methylobacterium extorquens
AM1]
gi|418059134|ref|ZP_12697091.1| iron-sulfur cluster loop [Methylobacterium extorquens DSM 13060]
gi|240009441|gb|ACS40667.1| hypothetical protein MexAM1_META1p2915 [Methylobacterium extorquens
AM1]
gi|373567329|gb|EHP93301.1| iron-sulfur cluster loop [Methylobacterium extorquens DSM 13060]
Length = 254
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 14/188 (7%)
Query: 93 QNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLES 152
T A+S +AF +L++ +P W + AA + IE I KA IK +L + E
Sbjct: 66 HRTRNADSGRAFKALRARWPDWTEIEAASVEEIEATIHGVTWPELKAPRIKAVLAAVQER 125
Query: 153 KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVFEISKAIG 211
G L L++L +S++E + L GIGPKT A VL F L+ PVD+H +++ G
Sbjct: 126 VGALTLDFLGDMSVNEARGWLEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTG 185
Query: 212 WVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
+ D ++ L ++P + +D + +L HG+ R C R + G
Sbjct: 186 LIGAKVDVGPSHAVLRAQLPDDWSAQKLYDNHEVLMLHGQ--RVCF------HRSPACGR 237
Query: 268 LCPLLNYC 275
C LL+ C
Sbjct: 238 -CVLLDIC 244
>gi|389690704|ref|ZP_10179597.1| putative endoIII-related endonuclease [Microvirga sp. WSM3557]
gi|388588947|gb|EIM29236.1| putative endoIII-related endonuclease [Microvirga sp. WSM3557]
Length = 255
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 14/188 (7%)
Query: 93 QNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLES 152
T A+S +AF +LK + W ++ A + +E I+ KA ++ +L+ + E
Sbjct: 46 HRTRNADSGRAFKALKGRYADWRAMMDAPTEEVEETIQGVTWPEQKAPRLQAVLRAIEER 105
Query: 153 KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVFEISKAIG 211
G L L++L + +DE +A L G+GPKT A VL F L++ PVD+H +++ G
Sbjct: 106 HGSLSLDFLDTMPVDEARAWLESIPGVGPKTSAAVLSFSKLRKAALPVDSHHHRVAQRTG 165
Query: 212 WVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
+P + ++ L +P++ +D + ++ HG+ C C K +R
Sbjct: 166 LIPQSTAVGPSHAVLAALLPEDWDAQQVYDHHEVMMLHGQRC--CFFKSPACER------ 217
Query: 268 LCPLLNYC 275
C +L+ C
Sbjct: 218 -CAILDLC 224
>gi|448302984|ref|ZP_21492934.1| HhH-GPD family protein [Natronorubrum sulfidifaciens JCM 14089]
gi|445593991|gb|ELY48158.1| HhH-GPD family protein [Natronorubrum sulfidifaciens JCM 14089]
Length = 270
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 12/187 (6%)
Query: 57 KHNMTRDKNSVPLDMNE---YDE-GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP 112
+HN+ +N+V +D +E +D+ G + LV+T+LSQNT++ S A L ST+
Sbjct: 25 EHNIDGGQNAVTIDDDESIFWDQTGGSQDAFVCLVRTILSQNTSDKASQPAHDELMSTYG 84
Query: 113 T-----WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCL--EYLRGLS 165
E + +AEQ + I GL K+ I + +LE G +++ +
Sbjct: 85 GDDIDLAESLASAEQSILAETISGAGLYNQKSETIIDTAAWVLEEFGSAAAFDTFVKDEA 144
Query: 166 IDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYL 224
++ L RG+GPKT CVL+F + FPVDTHV I + +G P AD
Sbjct: 145 PSTVRDTLLSVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVRA 204
Query: 225 HLNQRIP 231
L + +P
Sbjct: 205 VLERDVP 211
>gi|226357357|ref|YP_002787097.1| DNA-(apurinic or apyrimidinic site) lyase [Deinococcus deserti
VCD115]
gi|226319347|gb|ACO47343.1| putative DNA-(apurinic or apyrimidinic site) lyase (endonuclease
III) [Deinococcus deserti VCD115]
Length = 247
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 78/146 (53%), Gaps = 4/146 (2%)
Query: 72 NEYDEGEEESVLDG---LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENA 128
+EY E E D L+ T+LSQ T + A+ L+ T W+ ++AA + + +A
Sbjct: 29 DEYGEKPLEPRRDPMHELISTILSQRTNWRDEDAAYQELR-TLGDWDAIIAAPTEAVAHA 87
Query: 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
IR +KA I+ L+ + ++ G L++LR L + + L+ G+G KT + VL
Sbjct: 88 IRRSNYPESKAPRIQATLRAIRDAPGGYNLDFLRELPVKDALKWLTDLPGVGIKTASLVL 147
Query: 189 MFHLQQDDFPVDTHVFEISKAIGWVP 214
+F+ + FPVDTHV ++ +G +P
Sbjct: 148 LFNYARPVFPVDTHVHRVNTRVGTIP 173
>gi|15807425|ref|NP_296158.1| endonuclease III [Deinococcus radiodurans R1]
gi|6460251|gb|AAF11977.1|AE002073_7 endonuclease III [Deinococcus radiodurans R1]
Length = 259
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LSQ TT A+ A+ L+ T W+ + A + +AIR +KA I+
Sbjct: 53 LISTILSQRTTHADEEAAYQELR-TLGDWDAITLAPTDAVAHAIRRSNYPESKAPRIQET 111
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L+ + + G L++LR L + + L+ G+G KT + VL+F+ + FPVDTHV
Sbjct: 112 LRRIKAAPGGYDLDFLRDLPVKDALKWLTDLPGVGVKTASLVLLFNYARPVFPVDTHVHR 171
Query: 206 ISKAIGWVP 214
+S +G +P
Sbjct: 172 VSTRVGVIP 180
>gi|94984892|ref|YP_604256.1| HhH-GPD [Deinococcus geothermalis DSM 11300]
gi|94555173|gb|ABF45087.1| Endonuclease III, alpha helical glycosidase superfamily
[Deinococcus geothermalis DSM 11300]
Length = 269
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC--GGLAPTKAA 140
LD L++ +L+Q T + + F +LK+ +P WE LA +E +R GGLA TKA
Sbjct: 58 LDSLIRLILAQQNTSVLTRRQFGALKTAYPVWEAALADGPDGVEAVLRAAGGGLARTKAD 117
Query: 141 CIKNILKCLLE------------SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
I N+L L E +G L L LR ++ +E +A L G+G KT + +L
Sbjct: 118 SIWNVLHRLAELGLAGELGLAGEGRGGLSLRVLRTMTDEEARALLESLPGVGMKTASLLL 177
Query: 189 MFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
+F L + P++ ++ ++ + P+ + K ++ +P++
Sbjct: 178 LFDLARPAIPIENNIHRVAGRLDLFPSRWNVLKAERWFDEVLPRD 222
>gi|359479390|ref|XP_002270885.2| PREDICTED: DEMETER-like protein 3-like [Vitis vinifera]
Length = 1372
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Query: 48 FVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASL 107
F Y QR + T +KN +N +EG+ D ++ + +SL+ F S
Sbjct: 784 FTSYSEQRNEMGETENKN-----LNNSNEGKRGKTNDK------EDHSFDWDSLRRFYSN 832
Query: 108 KSTFP---------TWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCL 158
+ WE V A + AI G+ AA IK+ L L+ GKL L
Sbjct: 833 RGRKSRIHDARDSLDWEAVRDANVTHVAKAISTRGMNNVLAARIKDFLDRLVRDHGKLDL 892
Query: 159 EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAAD 218
E+LR + ++ K L RG+G K+V CV + L FPVDT+V I+ +GWVP
Sbjct: 893 EWLRDVPPEKAKDYLLSIRGLGLKSVECVRLLTLHHHAFPVDTNVGRITVRLGWVPLQPL 952
Query: 219 RNKTYLH-LNQRIPKE 233
+ YLH L+Q P +
Sbjct: 953 PSDVYLHSLDQYPPMD 968
>gi|163852137|ref|YP_001640180.1| HhH-GPD family protein [Methylobacterium extorquens PA1]
gi|163663742|gb|ABY31109.1| HhH-GPD family protein [Methylobacterium extorquens PA1]
Length = 254
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 14/188 (7%)
Query: 93 QNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLES 152
T A+S +AF +L++ + W + AA + IE I KA IK +L + E
Sbjct: 66 HRTRNADSGRAFKALRARWSDWTEIEAASVEEIEATIHGVTWPELKAPRIKAVLAAVQER 125
Query: 153 KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVFEISKAIG 211
G L L++L +S+DE + L GIGPKT A VL F L+ PVD+H +++ G
Sbjct: 126 VGALSLDFLGDMSVDEARGWLEAIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTG 185
Query: 212 WVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
+ D ++ L ++P + +D + +L HG+ R C R + G
Sbjct: 186 LIGAKVDVGPSHAVLRAQLPDDWSAQKLYDNHEVLMLHGQ--RVCF------HRSPTCGR 237
Query: 268 LCPLLNYC 275
C LL+ C
Sbjct: 238 -CVLLDIC 244
>gi|410721172|ref|ZP_11360516.1| putative endoIII-related endonuclease [Methanobacterium sp.
Maddingley MBC34]
gi|410599623|gb|EKQ54169.1| putative endoIII-related endonuclease [Methanobacterium sp.
Maddingley MBC34]
Length = 213
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 70 DMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
D+ +++G+ VL ++T+LSQ T + N+ +A A L S + T + A+ +E I
Sbjct: 19 DLRVFEDGDPYRVL---IRTILSQRTRDDNTDRASAQLFSKYHTMAEIAEADPALLEPLI 75
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
R G KA I + + L + +Y++GL EL G+G KT CVL+
Sbjct: 76 RPAGFYHVKAQRIVEVSRKLQDEFKGQVPDYMKGL------LELP---GVGRKTANCVLV 126
Query: 190 FHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-L 248
+ Q+ PVD HV IS +G V T +T L + +P+E +LN L+ G+ +
Sbjct: 127 YGFQKPAIPVDVHVHRISNRLGLVDTKHP-EETEAELEKLVPREYWIELNDLMVQFGQTI 185
Query: 249 CR 250
CR
Sbjct: 186 CR 187
>gi|288560832|ref|YP_003424318.1| endonuclease III Nth [Methanobrevibacter ruminantium M1]
gi|288543542|gb|ADC47426.1| endonuclease III Nth [Methanobrevibacter ruminantium M1]
Length = 215
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L++T+LSQ T + N+ +A +L +P V A + ++ I+ G KAA I +
Sbjct: 37 LIRTILSQRTRDENTDQAANALFEVYPDIYAVADAPVEHVQELIKPAGFYRVKAARILEV 96
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L++ G E R + E+ + G+G KT CV++F Q PVDTHV
Sbjct: 97 SRILIDQYGG---EVPREMD------EMLKLPGVGRKTANCVIVFAFQDAAIPVDTHVHR 147
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS G + D +T L +++PK+L DLN L+ G+ +CR
Sbjct: 148 ISNRWG-IADTKDPEETEQVLMEKVPKDLWVDLNDLMVQFGQTICR 192
>gi|297734851|emb|CBI17085.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A + AI G+ AA IK+ L L+ GKL LE+LR + ++ K L
Sbjct: 401 WEAVRDANVTHVAKAISTRGMNNVLAARIKDFLDRLVRDHGKLDLEWLRDVPPEKAKDYL 460
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH-LNQRIPK 232
RG+G K+V CV + L FPVDT+V I+ +GWVP + YLH L+Q P
Sbjct: 461 LSIRGLGLKSVECVRLLTLHHHAFPVDTNVGRITVRLGWVPLQPLPSDVYLHSLDQYPPM 520
Query: 233 E 233
+
Sbjct: 521 D 521
>gi|357152016|ref|XP_003575981.1| PREDICTED: uncharacterized protein LOC100830449 [Brachypodium
distachyon]
Length = 1717
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 82/180 (45%), Gaps = 26/180 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ + I +AIR G+ A I+N LK L+ G + LE+LR + D K L
Sbjct: 1179 WEAVRCADVQRISHAIRERGMNNVLAERIQNFLKRLVRDHGSIDLEWLRDIPPDSAKDYL 1238
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-- 231
RG+G K+V CV + L FPVDT+V I +GWVP LHL + P
Sbjct: 1239 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVL 1298
Query: 232 ---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
++ ++L+ + T GK+ C K N N CP+ + C+
Sbjct: 1299 ETIQKYLWPRLCKLDQQTLYELHYQMITFGKVF--CTKSKPN-------CNACPMRSECK 1349
>gi|156041124|ref|XP_001587548.1| hypothetical protein SS1G_11541 [Sclerotinia sclerotiorum 1980]
gi|154695924|gb|EDN95662.1| hypothetical protein SS1G_11541 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 347
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 41/232 (17%)
Query: 3 KSRKRKQVEVTETRQDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTR 62
K+ K+ + + + P+P P E + L HG K +++
Sbjct: 107 KNPKKSKYDYSSNALSPFPNWPAPNPETVETVFRLLEDKHG-------------KIEISQ 153
Query: 63 DKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP---------- 112
K S+ L + ++ +E +++D +++ LS T + N+ +AF + +TF
Sbjct: 154 SKPSLGLRIEGCNQ-DEPALIDAVIRARLSAGTNDMNASRAFIGILTTFGRRKPGTGPGI 212
Query: 113 -TWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLE------SKGK---------- 155
WE V A + + AI+ G+ K+ K IL + E +GK
Sbjct: 213 VDWEAVRLAPLEKLYEAIKTEGMGNVKSRSCKAILDMVHEENVIRRQRGKVATNSRGIDL 272
Query: 156 LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEIS 207
L LE++R LS DE + F G+GPKT AC++ +Q + F VDTHV++IS
Sbjct: 273 LSLEHMRSLSKDEAFDKFITFPGVGPKTAACIISICMQHNAFAVDTHVYQIS 324
>gi|385773949|ref|YP_005646516.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
HVE10/4]
gi|323478064|gb|ADX83302.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus islandicus
HVE10/4]
Length = 233
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 4/133 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
LV T+LSQN+T+ ++LKA+ L K T E + A+ IENA++ GL TKA +K
Sbjct: 39 LVATILSQNSTDKSALKAYLELEKKVGVTPEKLSDADLSDIENALKISGLYKTKAKRLKI 98
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
I K +LE L L + E EL +F GIG KT VL+ + FP+DTH+
Sbjct: 99 ISKIILEKYNGLIDNLLNSSNPRE---ELLKFEGIGEKTADVVLLTCRGYEVFPIDTHIT 155
Query: 205 EISKAIGWVPTAA 217
+SK +G VP A
Sbjct: 156 RVSKRLGIVPMNA 168
>gi|408381370|ref|ZP_11178919.1| endonuclease III [Methanobacterium formicicum DSM 3637]
gi|407815837|gb|EKF86400.1| endonuclease III [Methanobacterium formicicum DSM 3637]
Length = 213
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 14/182 (7%)
Query: 70 DMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
D+ +++G+ VL ++T+LSQ T + N+ +A A L S + T + A+ +E I
Sbjct: 19 DLRVFEDGDPYRVL---IRTILSQRTRDDNTDRASAQLFSKYHTINEIAEADPTLLEPLI 75
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
R G KA I + + LL+ +G D++K L G+G KT CVL+
Sbjct: 76 RPAGFYHVKAQRIVEVSRKLLDK--------FKGQVPDDMK-NLLELPGVGRKTANCVLV 126
Query: 190 FHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-L 248
+ Q PVD HV IS +G V T +T L + +P+E +LN L+ G+ +
Sbjct: 127 YGFQIPAIPVDVHVHRISNRLGLVNTKTP-EETEAELEKIVPREYWIELNDLMVQFGQTI 185
Query: 249 CR 250
CR
Sbjct: 186 CR 187
>gi|322371204|ref|ZP_08045756.1| DNA-(apurinic or apyrimidinic site) lyase [Haladaptatus
paucihalophilus DX253]
gi|320549194|gb|EFW90856.1| DNA-(apurinic or apyrimidinic site) lyase [Haladaptatus
paucihalophilus DX253]
Length = 268
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 6/154 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTW---EHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A L + + E + A+ + + IR GL KA I
Sbjct: 58 LVRTILSQNTSDVASQPAHDDLVARYGGGDLAETLAKADHGELADTIRSAGLYNQKADVI 117
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ +L G E++R +E+++EL G+GPKT CVL+F Q FPV
Sbjct: 118 IESAERVLADFGSAAAFDEFVREEEPNEVRSELLDMNGVGPKTADCVLLFSGGQSGVFPV 177
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
DTHV I + +G P AD L + +P E
Sbjct: 178 DTHVHRIYRRMGIAPADADHEDVREVLEREVPAE 211
>gi|320100933|ref|YP_004176525.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfurococcus mucosus
DSM 2162]
gi|319753285|gb|ADV65043.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfurococcus mucosus
DSM 2162]
Length = 223
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 16/190 (8%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP---TWEHVLAAEQKCIENAIRCGGL 134
E S+ + LV VLSQNT++ N++KA A L+ T + +L+ EQ +E +R G+
Sbjct: 20 ETTSLFEVLVAVVLSQNTSDRNAVKAIARLREIGQGRITPQVILSMEQHMLEGILRPAGM 79
Query: 135 APTKAACIKNILKCLLESKG---KLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
+A ++ + + L + G +L E R ++E + L G+G KT VL+ +
Sbjct: 80 YRNRARVLRKLAE-LFQEPGFTERLTAEVTRAGDVNEARRRLMELPGVGEKTADVVLLRY 138
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK---- 247
FPVDTH+ I++ +G+ T + + + P +L+ L THG+
Sbjct: 139 FGIPVFPVDTHISRITRRMGFTETGRYSDVSSFWMENTSPWNY-LELHLYLITHGRRICK 197
Query: 248 ----LCRNCI 253
LC C+
Sbjct: 198 ARKPLCDECV 207
>gi|255575365|ref|XP_002528585.1| Protein ROS1, putative [Ricinus communis]
gi|223531981|gb|EEF33793.1| Protein ROS1, putative [Ricinus communis]
Length = 1634
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 60/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V AE I N I+ G+ A IKN L L+ G + LE+LR + D+ K L
Sbjct: 1130 WEAVRCAEVNDIANTIKERGMNNVLAERIKNFLNRLVREHGSIDLEWLRDVPPDKAKEYL 1189
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1190 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1247
>gi|398391040|ref|XP_003848980.1| hypothetical protein MYCGRDRAFT_48308 [Zymoseptoria tritici IPO323]
gi|339468856|gb|EGP83956.1| hypothetical protein MYCGRDRAFT_48308 [Zymoseptoria tritici IPO323]
Length = 103
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 7/100 (7%)
Query: 172 ELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
EL ++ +GPK+ + V+ + L++D F VD H++ I+ W P A + T HLN RIP
Sbjct: 3 ELMTYKYMGPKSASVVMGWCLKRDSFTVDVHIYRIAGLWHWRPEKATKELTQSHLNARIP 62
Query: 232 KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPL 271
K+L+FDL+ LL HG+ C C KGG + +G +C L
Sbjct: 63 KDLQFDLHFLLLQHGRECPAC--KGGAK-----SGAVCLL 95
>gi|429220080|ref|YP_007181724.1| endoIII-related endonuclease [Deinococcus peraridilitoris DSM
19664]
gi|429130943|gb|AFZ67958.1| putative endoIII-related endonuclease [Deinococcus peraridilitoris
DSM 19664]
Length = 263
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LSQ T N A+ + F +WE V A+ + AI A KA I+
Sbjct: 70 LISTILSQRTNWRNEDLAYRRMMERFVSWEGVEQADVTALAEAISPSNFAEVKAPNIQRT 129
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L+ + E++G+ +++L L ++E L G+G KT VL+F ++ PVDTHV
Sbjct: 130 LRAIREARGEYNIDFLADLPVEEGLRWLLALPGVGLKTATLVLLFCFRKSVLPVDTHVHR 189
Query: 206 ISKAIGWV 213
+S+ +G +
Sbjct: 190 VSQRVGLI 197
>gi|336252280|ref|YP_004595387.1| HhH-GPD family protein [Halopiger xanaduensis SH-6]
gi|335336269|gb|AEH35508.1| HhH-GPD family protein [Halopiger xanaduensis SH-6]
Length = 274
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 8/156 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPT-----WEHVLAAEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + E + AEQ + I+ GL K+
Sbjct: 57 LVRTILSQNTSDKASQPAHDALIERYDGEGIDLAESLAGAEQSILAETIQPAGLYNQKSE 116
Query: 141 CIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
I + + +LE+ G E+++ E++ L RG+GPKT CVL+F + F
Sbjct: 117 IIIDTAEWVLEAFGSAAAFDEFVKDEDPAEVRETLLEVRGVGPKTADCVLLFAGGRGGVF 176
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
PVDTHV I + +G P AD L + +P E
Sbjct: 177 PVDTHVHRIYRRLGIAPADADHEAVRAVLEREVPAE 212
>gi|448613277|ref|ZP_21663157.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mucosum ATCC BAA-1512]
gi|445740174|gb|ELZ91680.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Haloferax mucosum ATCC BAA-1512]
Length = 268
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTW---EHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A +L + E + AA+++ I +AIR GGL K+ I
Sbjct: 58 LVRTILSQNTSDKASQPAHDTLLERYGRGDLAESLAAADREGIIDAIRSGGLYNRKSKLI 117
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + + +L + G Y+R ++ L G+GPKT CVL+F + FPV
Sbjct: 118 QGVAEDVLTNFGSEADFDRYVREEDPSTVRDRLLEMNGVGPKTADCVLLFAGGRGGVFPV 177
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
DTHV I++ +G AD L + +P E
Sbjct: 178 DTHVHRIARRLGIASVDADHEAVRATLEREVPAE 211
>gi|332295602|ref|YP_004437525.1| HhH-GPD family protein [Thermodesulfobium narugense DSM 14796]
gi|332178705|gb|AEE14394.1| HhH-GPD family protein [Thermodesulfobium narugense DSM 14796]
Length = 219
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKC--IENAIRCGG 133
E ++E+ L+K +LSQNTT+ NS++A+ +L L+ ++ C I+++I+ G
Sbjct: 21 ERKDENFFHELIKAILSQNTTDLNSVQAYNNLIKIINNDLQNLSKDEFCDKIKDSIKIAG 80
Query: 134 LAPTKAACIKNILKCLLESKGKLCLE-YLRGLSIDEIKAELSRFRGIGPKTVACVLMFHL 192
L K + ++ K L++K +E Y + + I EI GIG KTV+C ++F L
Sbjct: 81 LNNQKTKTLHSLGKKFLQNKNYSNIEDYFKKMKISEIVEVFLSIDGIGLKTVSCAILFGL 140
Query: 193 QQDDFPVDTHVFEISKAI 210
+ FPVDTH+ I + +
Sbjct: 141 HKPAFPVDTHISRIVQRV 158
>gi|297625112|ref|YP_003706546.1| HhH-GPD family protein [Truepera radiovictrix DSM 17093]
gi|297166292|gb|ADI16003.1| HhH-GPD family protein [Truepera radiovictrix DSM 17093]
Length = 241
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQ TT N +A+ + F +W V A + AI KA I+
Sbjct: 50 LVSTILSQRTTWQNEERAYRRMWERFGSWVGVRDAPVAELAEAIAPSNYPEVKAPNIQKT 109
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ +LE + L +LR L +DE A L+ G+G KT + VL+F + PVDTHV+
Sbjct: 110 VARVLERSPEADLSFLRDLPLDEALAWLTSLPGVGLKTASLVLLFCFARPVLPVDTHVYR 169
Query: 206 ISKAIG 211
+S+ +G
Sbjct: 170 VSQRVG 175
>gi|413945495|gb|AFW78144.1| hypothetical protein ZEAMMB73_419140 [Zea mays]
Length = 909
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 81/179 (45%), Gaps = 26/179 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ + I +AIR G+ A I+N L L+ G + LE+LR + D K L
Sbjct: 393 WEAVRCADVRRISHAIRERGMNNVLAERIQNFLNRLVRDHGSIDLEWLRYIPPDSAKDYL 452
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-- 231
RG+G K+V CV + L FPVDT+V I +GWVP LHL + P
Sbjct: 453 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPIL 512
Query: 232 ---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
++ ++L+ + T GK+ C K+ N N CP+ + C
Sbjct: 513 ETIQKYLWPRLCKLDQQTLYELHYQMITFGKVF--CTKRQPN-------CNACPMRSEC 562
>gi|367471322|ref|ZP_09470967.1| Endonuclease III [Patulibacter sp. I11]
gi|365813601|gb|EHN08854.1| Endonuclease III [Patulibacter sp. I11]
Length = 248
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV TVLSQ+T + N A+ L P WE V A + IE AIR GG++ K+ I I
Sbjct: 48 LVLTVLSQSTNDRNRDVAYLRLVERLPDWELVARAPVEEIEAAIRPGGISKVKSVRIAAI 107
Query: 146 LKCLLESKG---------------KLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF 190
L + E G L L ++ + + L G+G KT ACVL+F
Sbjct: 108 LDAIAERSGPTARALGLDPAPDASPLDLTWMEAAPVAAGRDFLCELPGVGRKTAACVLLF 167
Query: 191 HLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCR 250
D PVDTHV + + A ++ + + P+ +L+ L HG+ R
Sbjct: 168 AYGLHDVPVDTHVQRVGTRLALFRPGAPLDELHDEMLWITPEGAGLELHVNLLRHGR--R 225
Query: 251 NC 252
C
Sbjct: 226 TC 227
>gi|242090707|ref|XP_002441186.1| hypothetical protein SORBIDRAFT_09g021920 [Sorghum bicolor]
gi|241946471|gb|EES19616.1| hypothetical protein SORBIDRAFT_09g021920 [Sorghum bicolor]
Length = 1704
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 26/180 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ + I +AIR G+ A I+N L L+ G + LE+LR + D K L
Sbjct: 1221 WEAVRCADAQRISHAIRERGMNNILAERIQNFLNRLVRDHGSIDLEWLRYIPPDSAKDYL 1280
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-- 231
RG+G K+V CV + L FPVDT+V I +GWVP LHL + P
Sbjct: 1281 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPIL 1340
Query: 232 ---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
++ ++L+ + T GK+ C K N N CP+ + C+
Sbjct: 1341 ETIQKYLWPRLCKLDQQTLYELHYQMITFGKVF--CTKSKPN-------CNACPMRSECK 1391
>gi|94986389|ref|YP_605753.1| HhH-GPD [Deinococcus geothermalis DSM 11300]
gi|94556670|gb|ABF46584.1| HhH-GPD [Deinococcus geothermalis DSM 11300]
Length = 242
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Query: 73 EYDEGE---EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
EY E + + L+ T+LSQ TT+ + A+ +L+ W+ ++AA + + +AI
Sbjct: 30 EYGEKQLLPRREAMHELISTILSQRTTQQDEELAYQALRQ-LGDWDAIIAAPTEAVAHAI 88
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
R +KA I+ L+ + + +G L++L L + + L+ G+G KT + VL+
Sbjct: 89 RRSNYPESKAPRIQATLRAIRDERGSYDLDFLAELPVKDALKWLTALPGVGIKTASLVLL 148
Query: 190 FHLQQDDFPVDTHVFEISKAIG 211
F+ + FPVDTHV ++ +G
Sbjct: 149 FNYARPVFPVDTHVHRVTTRVG 170
>gi|297740062|emb|CBI30244.3| unnamed protein product [Vitis vinifera]
Length = 1470
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 61/118 (51%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V ++ I N I+ G+ A IK+ L L+ G + LE+LR + D+ K L
Sbjct: 955 WEAVRCSDVNEIANTIKERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRDVPPDKAKEYL 1014
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
FRG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1015 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1072
>gi|449451249|ref|XP_004143374.1| PREDICTED: protein ROS1-like [Cucumis sativus]
Length = 1782
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 61/118 (51%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ I IR G+ A IK+ L L++ G LE+LR + D+ K L
Sbjct: 1257 WEAVRCADIDDIAYTIRERGMNNRLAERIKDFLDRLVKDHGSTDLEWLRDVPPDQAKEYL 1316
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + LQQ FPVDT+V I+ +GWVP LHL + P
Sbjct: 1317 LSIRGLGLKSVECVRLLTLQQVAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1374
>gi|225440992|ref|XP_002277401.1| PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera]
Length = 1942
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 61/118 (51%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V ++ I N I+ G+ A IK+ L L+ G + LE+LR + D+ K L
Sbjct: 1427 WEAVRCSDVNEIANTIKERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRDVPPDKAKEYL 1486
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
FRG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1487 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1544
>gi|218187756|gb|EEC70183.1| hypothetical protein OsI_00912 [Oryza sativa Indica Group]
Length = 1952
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 84 DGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
D L K VL + + S A S+ WE + AE K I + IR G+ A IK
Sbjct: 1404 DMLRKEVLYSHGNKERSQNAKDSID-----WETIRQAEVKEISDTIRERGMNNMLAERIK 1458
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ L L+ G + LE+LR + D+ K L RG+G K+V CV + L FPVDT+V
Sbjct: 1459 DFLNRLVRDHGSIDLEWLRYVDSDKAKDYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNV 1518
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIP 231
I +GWVP LHL + P
Sbjct: 1519 GRICVRLGWVPLQPLPESLQLHLLEMYP 1546
>gi|23010115|ref|ZP_00050917.1| COG0177: Predicted EndoIII-related endonuclease [Magnetospirillum
magnetotacticum MS-1]
Length = 271
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 14/188 (7%)
Query: 93 QNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLES 152
T A+S +AF +L++ +P W V A + +E IR KA IK +L + E
Sbjct: 84 HRTRNADSGRAFKALRARWPDWAAVEEAPVEEVEETIRGVTWPELKAPRIKAVLAAVRER 143
Query: 153 KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVFEISKAIG 211
G L L +L +S+DE + L GIGPKT A VL F L+ PVD+H +++ G
Sbjct: 144 VGALDLAFLEEMSVDEARGWLEGIPGIGPKTSAAVLSFSTLRMPALPVDSHHHRVAQRTG 203
Query: 212 WVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
+ D ++ L ++P + +D + +L HG+ R C + A +
Sbjct: 204 LIGPKVDVGPSHGMLRAQLPADWSAQKLYDNHEVLMLHGQ--RVCFH-------RSPACD 254
Query: 268 LCPLLNYC 275
C LL+ C
Sbjct: 255 RCVLLDIC 262
>gi|242065150|ref|XP_002453864.1| hypothetical protein SORBIDRAFT_04g019820 [Sorghum bicolor]
gi|241933695|gb|EES06840.1| hypothetical protein SORBIDRAFT_04g019820 [Sorghum bicolor]
gi|333471385|gb|AEF38426.1| 5-methylcytosine DNA glycosylase [Sorghum bicolor]
Length = 1891
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 86/193 (44%), Gaps = 20/193 (10%)
Query: 84 DGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
D L K VLS + S A ++ WE V AE + I IR G+ A IK
Sbjct: 1369 DSLRKEVLSNGGDKQRSHDARDTVD-----WEAVRQAEVREISETIRERGMNNMLAERIK 1423
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
L L+ G + LE+LR + D+ K L RG+G K+V CV + L FPVDT+V
Sbjct: 1424 EFLNRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNV 1483
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKE 263
I +GWVP LHL + ++L+ + T GK+ C K N
Sbjct: 1484 GRICVRLGWVPLQPLPESLQLHLLE------MYELHYQMITFGKVF--CTKSKPN----- 1530
Query: 264 SAGNLCPLLNYCE 276
N CP+ C+
Sbjct: 1531 --CNSCPMRAECK 1541
>gi|254424749|ref|ZP_05038467.1| hypothetical protein S7335_4909 [Synechococcus sp. PCC 7335]
gi|196192238|gb|EDX87202.1| hypothetical protein S7335_4909 [Synechococcus sp. PCC 7335]
Length = 254
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 95 TTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKG 154
T +S +AF L++ FP W+ V A+ + ++ AI KA I+ IL+ + + +G
Sbjct: 65 TKNKDSGRAFKQLRAAFPDWKLVRDAKTEAVQAAIAPCTWPEQKAPRIQQILQQITKERG 124
Query: 155 KLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVFEISKAIGWV 213
L +++L + + E +A L G+GPKT A VL F L++ PVD+H ++ +
Sbjct: 125 TLSIDFLADIPVAEARAWLETLTGVGPKTSAAVLAFSTLRRRALPVDSHHHRVAVRTELI 184
Query: 214 PTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHGKLC 249
P ++ L ++P++ +D + +L HG+ C
Sbjct: 185 PKKVTVGPSHAILEAQLPEDWSAQQVYDNHEVLMLHGQHC 224
>gi|413945496|gb|AFW78145.1| hypothetical protein ZEAMMB73_419140 [Zea mays]
Length = 565
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 60/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ + I +AIR G+ A I+N L L+ G + LE+LR + D K L
Sbjct: 393 WEAVRCADVRRISHAIRERGMNNVLAERIQNFLNRLVRDHGSIDLEWLRYIPPDSAKDYL 452
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I +GWVP LHL + P
Sbjct: 453 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYP 510
>gi|449501064|ref|XP_004161268.1| PREDICTED: uncharacterized protein LOC101230418 [Cucumis sativus]
Length = 1768
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE + A+ I +AIR G+ A IK+ L L++ G + LE+LR + D+ K L
Sbjct: 1240 WEAIRCADVNEIAHAIRERGMNNMLAERIKDFLNRLVKDHGSIDLEWLRDVEPDQAKEYL 1299
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1300 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1357
>gi|449440467|ref|XP_004138006.1| PREDICTED: uncharacterized protein LOC101222935 [Cucumis sativus]
Length = 1849
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE + A+ I +AIR G+ A IK+ L L++ G + LE+LR + D+ K L
Sbjct: 1323 WEAIRCADVNEIAHAIRERGMNNMLAERIKDFLNRLVKDHGSIDLEWLRDVEPDQAKEYL 1382
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1383 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1440
>gi|402075171|gb|EJT70642.1| hypothetical protein GGTG_11665 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 590
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 129/321 (40%), Gaps = 74/321 (23%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P H P+ ++C+ + + L A HG PE + +S PL G+
Sbjct: 13 PFPEHVAPSPDDCQRVWELLTAAHG--PEDSSSSSSG--------SDSSPL-TTAAGCGD 61
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP----------TW--------EHVLAA 120
+ VL+ L +T++S + A + A +L + F W E V AA
Sbjct: 62 PDDVLNALCRTIISGASHVARADAAIQNLAAEFGSGGGGGDTAVNWLAVADAPSERVHAA 121
Query: 121 EQKC------------------IENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYL- 161
+ C EN R L K+A + + L+ + KL L Y
Sbjct: 122 IKGCGLGNKKTEFVKALCARVRAENTARLAALRADKSAGMPSPPPSPLDGRLKLPLPYSD 181
Query: 162 --RGLSIDEIKA--------------------ELSRFRGIGPKTVACVLMFHLQQDDFPV 199
R I E+ +LS F+G+ KT ACV++ L + V
Sbjct: 182 EDRDAEIAELSVNILSLQRLRRPEVTVSDALRQLSAFQGVSVKTAACVVLSCLHKPCLAV 241
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTH-GKLCRNCIKKGGN 258
D +V+ +++ +GWVP A T+ HL R P LK DL LL H G+ C C N
Sbjct: 242 DGNVWRLARWLGWVPERATDLHTFYHLEVRAPDGLKRDLRRLLALHGGQACFRC-ASAAN 300
Query: 259 RQRKESAGN--LCPLLNYCEK 277
R+R + +CPL + ++
Sbjct: 301 RERGAARWEACVCPLEDLLDR 321
>gi|126466261|ref|YP_001041370.1| HhH-GPD family protein [Staphylothermus marinus F1]
gi|126015084|gb|ABN70462.1| HhH-GPD family protein [Staphylothermus marinus F1]
Length = 228
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 19/209 (9%)
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAP 136
++S+ + ++ +LSQNT++ N+++A+ +LK + T E +L+ + + A++ G+
Sbjct: 31 DKSLFEYIIGVMLSQNTSDKNAIRAYLNLKKIYGEITPEKILSTSIEKLVEALKPAGMYN 90
Query: 137 TKAACIKNILKCLLESKGKLCLEYLRGL----SIDEIKAELSRFRGIGPKTVACVLMFHL 192
+A I + K E K E LR L + E + L G+G KT VL+ +
Sbjct: 91 QRAQRIVELAKIFTERNVK---EELRKLVEEGKLREARKYLVNLPGVGLKTADVVLLMYY 147
Query: 193 QQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
+Q FPVDTH+ +SK +G++ + + Q P E + + LL THG+ + C
Sbjct: 148 KQPVFPVDTHIRRVSKRLGYIEKDNYETISRWWMKQLKPNEY-LEAHLLLITHGR--KTC 204
Query: 253 IKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
+ ++ + CP+ YC+ KT
Sbjct: 205 -------KARKPLCDKCPINKYCKYYCKT 226
>gi|449527101|ref|XP_004170551.1| PREDICTED: LOW QUALITY PROTEIN: protein ROS1-like, partial [Cucumis
sativus]
Length = 987
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 61/118 (51%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ I IR G+ A IK+ L L++ G LE+LR + D+ K L
Sbjct: 497 WEAVRCADIDDIAYTIRERGMNNRLAERIKDFLDRLVKDHGSTDLEWLRDVPPDQAKEYL 556
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + LQQ FPVDT+V I+ +GWVP LHL + P
Sbjct: 557 LSIRGLGLKSVECVRLLTLQQVAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 614
>gi|448419884|ref|ZP_21580728.1| endoiii-related endonuclease [Halosarcina pallida JCM 14848]
gi|445674798|gb|ELZ27335.1| endoiii-related endonuclease [Halosarcina pallida JCM 14848]
Length = 283
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 32/218 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIR-CGGLAPTKAACIKN 144
LV+T+LSQNT++ S A SL + + E A+E + A R LA + AA ++
Sbjct: 53 LVRTILSQNTSDVASQPAHDSLMERYSSGEARSASETRAGSEATRERSDLAESLAAAEQS 112
Query: 145 ILKCLLESKG--------------KLCLEY---------LRGLSIDEIKAELSRFRGIGP 181
L + S G ++C E+ + G E++ L G+GP
Sbjct: 113 ELAETISSAGLYNQKSEMIIGAAERICEEFGGADGFDAFVTGGDPGEVRERLLDIHGVGP 172
Query: 182 KTVACVLMFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE-LKFDLN 239
KT CVL+F + FPVDTHV I++ +G P AD HL + +P E F
Sbjct: 173 KTADCVLLFSGGRGGVFPVDTHVHRIARRMGLAPADADHEAVREHLERDVPAEKCGFGHT 232
Query: 240 CLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEK 277
++ + C +K E+ CPL + CE+
Sbjct: 233 AMIQFGREYC--TARKPACLDGPEA----CPLYDLCER 264
>gi|295690296|ref|YP_003593989.1| iron-sulfur cluster loop [Caulobacter segnis ATCC 21756]
gi|295432199|gb|ADG11371.1| iron-sulfur cluster loop [Caulobacter segnis ATCC 21756]
Length = 241
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LVK+ +S T +A S AF L++ F W+ + A + I KA +
Sbjct: 38 LVKSSISGRTQDAVSWDAFLRLRAAFKNWDDLADAPVAAVARIIEDVTFPADKARYLTTA 97
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVF 204
L+ + + G L L +L+GL++D+ + EL G+G K ACVL F L VD+HV
Sbjct: 98 LRMIRDKVGWLSLSHLKGLTVDQARWELQALPGVGVKVAACVLNFSDLAMRALVVDSHVD 157
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFD 237
++K IG V A D TY L P D
Sbjct: 158 RVAKRIGLV-GAGDTTHTYHTLMGLAPDAWTAD 189
>gi|356546049|ref|XP_003541444.1| PREDICTED: protein ROS1-like [Glycine max]
Length = 1881
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W+ V A+ I I+ G+ A IKN L L+E G + LE+LR + D+ K L
Sbjct: 1322 WDAVRCADVSEIAETIKERGMNNRLADRIKNFLNRLVEEHGSIDLEWLRDVPPDKAKEYL 1381
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-- 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1382 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 1441
Query: 232 ---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
+E ++L+ + T GK+ C K N N CP+ C
Sbjct: 1442 ESIQKYLWPRLCKLDQETLYELHYQMITFGKVF--CTKSKPN-------CNACPMRGEC 1491
>gi|242085358|ref|XP_002443104.1| hypothetical protein SORBIDRAFT_08g008620 [Sorghum bicolor]
gi|241943797|gb|EES16942.1| hypothetical protein SORBIDRAFT_08g008620 [Sorghum bicolor]
Length = 1856
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 86/193 (44%), Gaps = 20/193 (10%)
Query: 84 DGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
D L K VLS + S A ++ WE V AE + I IR G+ A IK
Sbjct: 1333 DSLRKEVLSNGGDKQRSHDARDTVD-----WEAVRQAEVREISETIRERGMNNMLAERIK 1387
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
L L+ G + LE+LR + D+ K L RG+G K+V CV + L FPVDT+V
Sbjct: 1388 EFLDRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNV 1447
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKE 263
I +GWVP LHL + ++L+ + T GK+ C K N
Sbjct: 1448 GRICVRLGWVPLQPLPESLQLHLLE------MYELHYQMITFGKVF--CTKSKPN----- 1494
Query: 264 SAGNLCPLLNYCE 276
N CP+ C+
Sbjct: 1495 --CNSCPMRVECK 1505
>gi|448298656|ref|ZP_21488684.1| HhH-GPD family protein [Natronorubrum tibetense GA33]
gi|445591326|gb|ELY45532.1| HhH-GPD family protein [Natronorubrum tibetense GA33]
Length = 298
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAA-----EQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + + LAA EQ + I GL K+
Sbjct: 83 LVRTILSQNTSDKASQPAHDALIERYNAEDIDLAASLENAEQSELAETISGAGLYNQKSE 142
Query: 141 CIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
+ + + +LE G +Y++ E++A L RG+GPKT CVL+F + F
Sbjct: 143 TLIDTAEWVLEEFGSATAFDDYVKDEDPSEVRATLLSVRGVGPKTADCVLLFAGGRGGVF 202
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
PVDTHV I + +G P AD L + IP
Sbjct: 203 PVDTHVHRIYRRLGIAPADADHEAVRAVLERDIP 236
>gi|413925772|gb|AFW65704.1| hypothetical protein ZEAMMB73_319662 [Zea mays]
Length = 1522
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 84 DGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
D L K VLS + S A ++ WE V AE + I IR G+ A IK
Sbjct: 1359 DSLRKKVLSNGGDKQRSHDARDTVD-----WEAVRQAEVREISETIRERGMNNMLAERIK 1413
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
L L+ G + LE+LR + D+ K L RG+G K+V CV + L FPVDT+V
Sbjct: 1414 EFLNRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNV 1473
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIP 231
I +GWVP LHL + P
Sbjct: 1474 GRICVRLGWVPLQPLPESLQLHLLEMYP 1501
>gi|413925773|gb|AFW65705.1| hypothetical protein ZEAMMB73_319662 [Zea mays]
Length = 1904
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 84 DGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
D L K VLS + S A ++ WE V AE + I IR G+ A IK
Sbjct: 1359 DSLRKKVLSNGGDKQRSHDARDTVD-----WEAVRQAEVREISETIRERGMNNMLAERIK 1413
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
L L+ G + LE+LR + D+ K L RG+G K+V CV + L FPVDT+V
Sbjct: 1414 EFLNRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDTNV 1473
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIP 231
I +GWVP LHL + P
Sbjct: 1474 GRICVRLGWVPLQPLPESLQLHLLEMYP 1501
>gi|147785279|emb|CAN77395.1| hypothetical protein VITISV_035357 [Vitis vinifera]
Length = 1824
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V ++ I N I+ G+ A IK+ L L+ G + LE+LR + D+ K L
Sbjct: 1304 WEAVRCSDVNEIANTIKERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRDVPPDKAKEYL 1363
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVP 214
FRG+G K+V CV + L FPVDT+V I+ +GWVP
Sbjct: 1364 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 1404
>gi|399575316|ref|ZP_10769074.1| endoiii-related endonuclease [Halogranum salarium B-1]
gi|399239584|gb|EJN60510.1| endoiii-related endonuclease [Halogranum salarium B-1]
Length = 265
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 6/154 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWE---HVLAAEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A SL + + + + AEQ + I+ GL K+ I
Sbjct: 56 LVRTILSQNTSDKASQPAHDSLMNRYGGGDLATTLADAEQSELAETIQSAGLYNQKSEMI 115
Query: 143 KNILKCLLESKGKL--CLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ +++ G E++R ++ L G+GPKT CVL+F + FPV
Sbjct: 116 VGAAEEIVDEFGGADEFDEFVREEDPQTVRTRLLEIHGVGPKTADCVLLFSGGRGGVFPV 175
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
DTHV I++ +G P AD + HL + +P E
Sbjct: 176 DTHVHRIARRMGLAPADADHEEVREHLERDVPAE 209
>gi|257389114|ref|YP_003178887.1| DNA-(apurinic or apyrimidinic site) lyase [Halomicrobium mukohataei
DSM 12286]
gi|257171421|gb|ACV49180.1| DNA-(apurinic or apyrimidinic site) lyase [Halomicrobium mukohataei
DSM 12286]
Length = 270
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 29/208 (13%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAA-----EQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + LAA +Q+ + I+ GL K+
Sbjct: 58 LVRTILSQNTSDKASQPAHDALMERYGADGEDLAATLADADQQRLAETIQPAGLHNQKSE 117
Query: 141 CIKNILKCLLESKGKLCLEY---------LRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
I + G++C EY +RG ++++ L +G+GPKT CVL+F
Sbjct: 118 TIVRL-------AGRVCEEYGFGAEFDAFVRGGDPGDVRSALLDMKGVGPKTADCVLLFA 170
Query: 192 LQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE-LKFDLNCLLYTHGKLC 249
+ FPVDTHV I++ +G P AD L IP E F ++ + C
Sbjct: 171 GGRGGVFPVDTHVHRIARRMGLAPADADHEGVRAALEDDIPAEKCGFGHTAMIQFGREYC 230
Query: 250 RNCIKKGGNRQRKESAGNLCPLLNYCEK 277
+K E+ CPL + CE+
Sbjct: 231 S--ARKPACLDDPEA----CPLADQCEQ 252
>gi|339699499|gb|AEJ87849.1| hypothetical protein [Fragaria x ananassa]
Length = 496
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 58/118 (49%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A I I+ G+ A IK L LL G + LE+LR + D+ K L
Sbjct: 13 WEAVRTANVNDIAQTIKERGMNNMLAERIKEFLNRLLREHGSVDLEWLRDVPPDQAKEYL 72
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
FRG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 73 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 130
>gi|255573046|ref|XP_002527453.1| conserved hypothetical protein [Ricinus communis]
gi|223533188|gb|EEF34945.1| conserved hypothetical protein [Ricinus communis]
Length = 1712
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 60/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A + I +AI+ G A IK L +L+ G + LE+LR D++K L
Sbjct: 1195 WEAVRQAPETEIADAIKSRGQHNIMARKIKKSLNRILDYHGSIDLEWLRHAPDDDVKVYL 1254
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
G+G K+V C+ + L D FPVDT+V I+ +GWVP LHL + P
Sbjct: 1255 LEIEGLGLKSVECLRLLTLYHDAFPVDTNVARIAVRLGWVPLEPLPGVLQLHLLEEYP 1312
>gi|356503779|ref|XP_003520681.1| PREDICTED: protein ROS1-like [Glycine max]
Length = 1764
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W+ V A+ I NAI+ G+ A I++ L L++ G + LE+LR + D+ K L
Sbjct: 1209 WDAVRRADVSEIANAIKERGMNNMLAERIQSFLNLLVDKHGGIDLEWLRDVPPDQAKEFL 1268
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1269 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1326
>gi|197124333|ref|YP_002136284.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
gi|196174182|gb|ACG75155.1| DNA-cytosine methyltransferase [Anaeromyxobacter sp. K]
Length = 657
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 6/179 (3%)
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGL 134
D G + +D LV VLS+ T E + +LK F +WE +L A ++ +E + GGL
Sbjct: 49 DLGNKPDPVDELVYIVLSRKTREDAYQATYDALKRRFASWEELLRAPEREVEAIVHRGGL 108
Query: 135 APTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ 194
K A + L+ L++ G L + ++ L I K+ C++M+ + +
Sbjct: 109 GKRKTASLVGALQALVDRFGSCTLRPALQWKDEALEEFLCSLPEISRKSAYCIMMYSMGR 168
Query: 195 DDFPVDTHV------FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
FPVDTHV I K G+ D + L +P L+ L+ L HG+
Sbjct: 169 SVFPVDTHVGRVLQRLGIYKGTGFSLEGLDHKQLQRTLADVVPPNLRRSLHINLVLHGR 227
>gi|413936924|gb|AFW71475.1| hypothetical protein ZEAMMB73_049283 [Zea mays]
Length = 1906
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V AE + I IR G+ A IK L L+ G + LE+LR + D+ K L
Sbjct: 1409 WEAVRQAEVREISETIRERGMNNMLAERIKEFLNRLVTDHGGIDLEWLRDVPPDKAKDFL 1468
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
RG+G K+V CV + L FPVDT+V I +GWVP LHL +
Sbjct: 1469 LSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLEM---- 1524
Query: 234 LKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
++L+ + T GK+ C K N N CPL C+
Sbjct: 1525 --YELHYQMITFGKVF--CTKSKPN-------CNSCPLRAECK 1556
>gi|356533903|ref|XP_003535497.1| PREDICTED: transcriptional activator DEMETER-like [Glycine max]
Length = 1915
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 71/151 (47%), Gaps = 5/151 (3%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S D L K V T + S+ SL +E V A K I I+ G+ A
Sbjct: 1377 SDWDKLRKEVQVNGTEKERSMDTMDSLD-----YEAVRCASVKEISKTIKERGMNNLLAE 1431
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
IK L L+ G + LE+LR + D+ K L FRG+G K+V CV + LQ FPVD
Sbjct: 1432 RIKEFLDRLVTEHGSIDLEWLRHVPQDKAKDFLLSFRGLGLKSVECVRLLTLQNIAFPVD 1491
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
T+V I+ +GWVP LHL + P
Sbjct: 1492 TNVGRIAVRLGWVPLQPLPEALQLHLLELYP 1522
>gi|15897075|ref|NP_341680.1| DNA endonuclease III, (ntH-1) [Sulfolobus solfataricus P2]
gi|284173420|ref|ZP_06387389.1| DNA endonuclease III, (ntH-1) [Sulfolobus solfataricus 98/2]
gi|384433576|ref|YP_005642934.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus solfataricus
98/2]
gi|1707778|emb|CAA69576.1| endonuclease III [Sulfolobus solfataricus P2]
gi|13813246|gb|AAK40470.1| DNA endonuclease III, probable (ntH-1) [Sulfolobus solfataricus P2]
gi|261601730|gb|ACX91333.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfolobus solfataricus
98/2]
Length = 236
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
LV T+LSQN+T+ +++KA+ L + T E + A IE+A++ GL TKA +K
Sbjct: 39 LVATILSQNSTDKSAIKAYLELERKVGVTPEKLSNANLADIESALKISGLYRTKAKRLKE 98
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF---HLQQDDFPVDT 201
I + +LE L ++ L L+ + EL + GIG KT VL+ + FPVDT
Sbjct: 99 ISRIILERYNGL-IDSL--LNTSNARDELLKLEGIGEKTADVVLLTCYGYYGYKVFPVDT 155
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCI 253
H+ +SK +G VPT A + L + L+ +L HG+ LC +CI
Sbjct: 156 HITRVSKRLGIVPTNAKYSLISSTLKELFSAYDLLHLHHMLIAHGRQTCKARKPLCNSCI 215
Query: 254 KK 255
K
Sbjct: 216 IK 217
>gi|16126511|ref|NP_421075.1| endonuclease III family protein [Caulobacter crescentus CB15]
gi|221235291|ref|YP_002517728.1| endonuclease III [Caulobacter crescentus NA1000]
gi|13423785|gb|AAK24243.1| endonuclease III family protein [Caulobacter crescentus CB15]
gi|220964464|gb|ACL95820.1| endonuclease III [Caulobacter crescentus NA1000]
Length = 241
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 2/153 (1%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LVK+ +S T +A S AF L++ F +WE + A+ + AI+ KA +
Sbjct: 38 LVKSSISGRTPDAVSWAAFLRLRAEFKSWEDLAEAKTARVAMAIQDVTFPEDKARRLITA 97
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVF 204
L+ + E G L L +L+ L +D+ + EL G+G K ACVL F L VDTHV
Sbjct: 98 LRMIEEKVGWLSLSHLKTLEVDQARWELQALPGVGVKVAACVLNFSDLAMRALVVDTHVD 157
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFD 237
+++ IG V + D TY L P D
Sbjct: 158 RVARRIGLVGS-GDTTNTYHTLMAMAPASWTAD 189
>gi|138996990|dbj|BAF52857.1| repressor of silencing 2b [Nicotiana tabacum]
Length = 1673
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 59/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A I + IR G+ A IKN L ++ G + LE+LR + D+ K L
Sbjct: 1273 WEAVRCANVNEIAHTIRERGMNNKLAERIKNFLNRIVSEHGSIDLEWLRDVPPDKAKEYL 1332
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1333 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1390
>gi|138996988|dbj|BAF52856.1| repressor of silencing 2a [Nicotiana tabacum]
Length = 1673
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 59/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A I + IR G+ A IKN L ++ G + LE+LR + D+ K L
Sbjct: 1273 WEAVRCANVNEIAHTIRERGMNNKLAERIKNFLNRIVSEHGSIDLEWLRDVPPDKAKEYL 1332
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1333 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1390
>gi|297827135|ref|XP_002881450.1| hypothetical protein ARALYDRAFT_482629 [Arabidopsis lyrata subsp.
lyrata]
gi|297327289|gb|EFH57709.1| hypothetical protein ARALYDRAFT_482629 [Arabidopsis lyrata subsp.
lyrata]
Length = 1432
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE + AA+ + I+ G+ A I+ L L++ G + LE+LR + D+ K L
Sbjct: 924 WEAIRAADVSEVAETIKSRGMNHKLAERIQGFLDRLVDDHGSIDLEWLRDVPPDKAKEYL 983
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
F G+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 984 LSFNGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYP 1041
>gi|449067484|ref|YP_007434566.1| endonuclease III [Sulfolobus acidocaldarius N8]
gi|449069758|ref|YP_007436839.1| endonuclease III [Sulfolobus acidocaldarius Ron12/I]
gi|449035992|gb|AGE71418.1| endonuclease III [Sulfolobus acidocaldarius N8]
gi|449038266|gb|AGE73691.1| endonuclease III [Sulfolobus acidocaldarius Ron12/I]
Length = 225
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 16/193 (8%)
Query: 71 MNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENA 128
++ Y G+ +V ++ T+LSQN+T+ ++L AF+ L T T + + A+ I +A
Sbjct: 25 ISSYICGKTRNVFATILATILSQNSTDKSALIAFSKLNETVGEITPDRIKHADINTIIDA 84
Query: 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
IR GL +KA IKN+ + + + L+ + +++ L+ GIG KT VL
Sbjct: 85 IRVAGLGNSKARYIKNVAEVIND------LDLNIEIDCQKLRDFLTAIEGIGDKTADVVL 138
Query: 189 MFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK- 247
+ + +FP+DTH+ + +G++ ++ + R E +L+ LL HG+
Sbjct: 139 LTCFRCREFPIDTHIRRVISRLGFLGSSPKYKDISEYFKTRFSSEDLLNLHHLLIAHGRK 198
Query: 248 -------LCRNCI 253
+C C+
Sbjct: 199 TCKSRKPICDKCV 211
>gi|70607241|ref|YP_256111.1| endonuclease III [Sulfolobus acidocaldarius DSM 639]
gi|68567889|gb|AAY80818.1| endonuclease III [Sulfolobus acidocaldarius DSM 639]
Length = 223
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 91/179 (50%), Gaps = 8/179 (4%)
Query: 71 MNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENA 128
++ Y G+ +V ++ T+LSQN+T+ ++L AF+ L T T + + A+ I +A
Sbjct: 23 ISSYICGKTRNVFATILATILSQNSTDKSALIAFSKLNETVGEITPDRIKHADINTIIDA 82
Query: 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
IR GL +KA IKN+ + + + L+ + +++ L+ GIG KT VL
Sbjct: 83 IRVAGLGNSKARYIKNVAEVIND------LDLNIEIDCQKLRDFLTAIEGIGDKTADVVL 136
Query: 189 MFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ + +FP+DTH+ + +G++ ++ + R E +L+ LL HG+
Sbjct: 137 LTCFRCREFPIDTHIRRVISRLGFLGSSPKYKDISEYFKTRFSSEDLLNLHHLLIAHGR 195
>gi|330370553|gb|AEC12446.1| repressor of gene silencing 1 [Gossypium hirsutum]
Length = 1758
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 59/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V AE I I+ G+ A IK+ L L+ G + LE+LR + D+ K L
Sbjct: 1230 WEAVRCAEVHEIAETIKERGMNNVLAQRIKDFLNRLVRDHGSIDLEWLRDVPPDKAKEYL 1289
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1290 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1347
>gi|193082832|emb|CAQ58412.1| putative transcriptional activator DEMETER [Hordeum vulgare subsp.
vulgare]
Length = 1981
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 84 DGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
D L K VL+ E S A +L WE + K I N IR G+ A IK
Sbjct: 1435 DILRKEVLANRGNEERSENAKDALD-----WETIRQINVKEISNTIRERGMNNMLAERIK 1489
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ L ++ G + LE+LR + D+ K L RG+G K+V CV + L FPVDT+V
Sbjct: 1490 DFLNRVVRDHGSIDLEWLRHVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNV 1549
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIP 231
I +GWVP LHL + P
Sbjct: 1550 GRICVRLGWVPLQPLPESLQLHLLELYP 1577
>gi|218196882|gb|EEC79309.1| hypothetical protein OsI_20143 [Oryza sativa Indica Group]
Length = 1873
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ + I +AIR G+ A I+ L L+ G + LE+LR + D K L
Sbjct: 1354 WEAVRCADVQRISHAIRERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYL 1413
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-- 231
RG+G K+V CV + L FPVDT+V I +GWVP LHL + P
Sbjct: 1414 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVL 1473
Query: 232 ---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
++ ++L+ + T GK+ C K N N CP+ + C
Sbjct: 1474 ETIQKYLWPRLCKLDQQTLYELHYQMITFGKVF--CTKSTPN-------CNACPMRSEC 1523
>gi|222631769|gb|EEE63901.1| hypothetical protein OsJ_18726 [Oryza sativa Japonica Group]
Length = 1837
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 80/180 (44%), Gaps = 26/180 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ + I +AIR G+ A I+ L L+ G + LE+LR + D K L
Sbjct: 1328 WEAVRCADVQRISHAIRERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYL 1387
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-- 231
RG+G K+V CV + L FPVDT+V I +GWVP LHL + P
Sbjct: 1388 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVL 1447
Query: 232 ---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
++ ++L+ + T GK+ C K N N CP+ + C+
Sbjct: 1448 ETIQKYLWPRLCKLDQQTLYELHYQMITFGKVF--CTKSKPN-------CNACPMRSECK 1498
>gi|424814000|ref|ZP_18239178.1| putative EndoIII-related endonuclease [Candidatus Nanosalina sp.
J07AB43]
gi|339757616|gb|EGQ42873.1| putative EndoIII-related endonuclease [Candidatus Nanosalina sp.
J07AB43]
Length = 119
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%)
Query: 164 LSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTY 223
+ ++E K L+ GIGPKT A +L FH Q+ PVDTHV I++ VP RNKT+
Sbjct: 1 MDVEEGKNWLTDIPGIGPKTAAVILCFHFQKPVIPVDTHVHRIAQRFDLVPENCSRNKTH 60
Query: 224 LHLNQRIPKELKFDLNCLLYTHGK 247
L +P +K+ L+ LL THG+
Sbjct: 61 EILETVVPNPIKYSLHILLITHGR 84
>gi|448574894|ref|ZP_21641417.1| endonuclease III [Haloferax larsenii JCM 13917]
gi|445732573|gb|ELZ84155.1| endonuclease III [Haloferax larsenii JCM 13917]
Length = 267
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIE---NAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A L F + A E AIR GL K+ I
Sbjct: 57 LVRTILSQNTSDKASQPAHDRLMERFGGGDLAEALAAADREALVEAIRSAGLYNQKSKLI 116
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + +L G +++R + ++ L +G+GPKT CVL+F +D FPV
Sbjct: 117 IGVAEAVLSDFGSEADFDQWVREGDPETVRERLLEMKGVGPKTADCVLLFAGGRDGVFPV 176
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
DTHV IS+ IG P AD L + +P E
Sbjct: 177 DTHVHRISRRIGLAPADADHEGVRERLERDVPGE 210
>gi|220682961|gb|ACL80319.1| DNA glycosylase/lyase 701 [Oryza sativa Japonica Group]
Length = 1812
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ + I +AIR G+ A I+ L L+ G + LE+LR + D K L
Sbjct: 1293 WEAVRCADVQRISHAIRERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYL 1352
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-- 231
RG+G K+V CV + L FPVDT+V I +GWVP LHL + P
Sbjct: 1353 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVL 1412
Query: 232 ---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
++ ++L+ + T GK+ C K N N CP+ + C
Sbjct: 1413 ETIQKYLWPRLCKLDQQTLYELHYQMITFGKVF--CTKSKPN-------CNACPMRSEC 1462
>gi|297827133|ref|XP_002881449.1| hypothetical protein ARALYDRAFT_902767 [Arabidopsis lyrata subsp.
lyrata]
gi|297327288|gb|EFH57708.1| hypothetical protein ARALYDRAFT_902767 [Arabidopsis lyrata subsp.
lyrata]
Length = 1619
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 59/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE + A+ + I+ G+ A I+ L L+ G + LE+LR + D+ K L
Sbjct: 1103 WEAIRTADVSEVAETIKKRGMNHMLAERIQGFLNRLVNEHGSIDLEWLRDIPPDKAKEYL 1162
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
FRG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1163 LSFRGLGLKSVECVRLLTLHHLAFPVDTNVARIAVRLGWVPLQPLPESLQLHLLEMYP 1220
>gi|255580114|ref|XP_002530889.1| conserved hypothetical protein [Ricinus communis]
gi|223529542|gb|EEF31495.1| conserved hypothetical protein [Ricinus communis]
Length = 1876
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 75 DEGEEESV-LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
+ G++++V D L K VL + S A SL +E + +A I + I+ G
Sbjct: 1334 ESGQKDAVDWDSLRKQVLVNGRKKERSESAMDSLD-----YEAMRSAHVNEISDTIKERG 1388
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
+ A IK+ L L+ G + LE+LR + D+ K L RG+G K+V CV + L
Sbjct: 1389 MNNMLAERIKDFLNRLVREHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLH 1448
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
FPVDT+V I+ +GWVP LHL + P
Sbjct: 1449 HLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1486
>gi|222631766|gb|EEE63898.1| hypothetical protein OsJ_18723 [Oryza sativa Japonica Group]
Length = 1857
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ + I +AIR G+ A I+ L L+ G + LE+LR + D K L
Sbjct: 1338 WEAVRCADVQRISHAIRERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYL 1397
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-- 231
RG+G K+V CV + L FPVDT+V I +GWVP LHL + P
Sbjct: 1398 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVL 1457
Query: 232 ---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
++ ++L+ + T GK+ C K N N CP+ + C
Sbjct: 1458 ETIQKYLWPRLCKLDQQTLYELHYQMITFGKVF--CTKSKPN-------CNACPMRSEC 1507
>gi|357142343|ref|XP_003572540.1| PREDICTED: uncharacterized protein LOC100823274 [Brachypodium
distachyon]
Length = 1946
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 57/118 (48%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ + I IR G+ A IK L L+ G + LE+LR L D+ K L
Sbjct: 1430 WEAVRQADVRDISETIRERGMNNVLAERIKEFLNRLVSDHGSIDLEWLRDLQPDKAKDYL 1489
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+ CV + L FPVDT+V I +GWVP LHL + P
Sbjct: 1490 LSIRGLGLKSAECVRLLTLHHMAFPVDTNVARICVRLGWVPLQPLPESLQLHLLELYP 1547
>gi|409728179|ref|ZP_11271049.1| HhH-GPD family protein [Halococcus hamelinensis 100A6]
gi|448722675|ref|ZP_21705208.1| HhH-GPD family protein [Halococcus hamelinensis 100A6]
gi|445789100|gb|EMA39793.1| HhH-GPD family protein [Halococcus hamelinensis 100A6]
Length = 270
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAA----EQKCIENAIRCGGLAPTKAAC 141
LV+T+LSQNT++ S A +L + + E + A +Q + I+ GL K+
Sbjct: 58 LVRTILSQNTSDKASQPAHDALMARYGEGEDLAVALSETDQDDLAETIQPAGLYNQKSET 117
Query: 142 IKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FP 198
+ I ++E G E++ ++ L F G+GPKT CVL+F + FP
Sbjct: 118 LGRIAGRVVEEYGGAAAFDEFVTAEDPATVRDTLLDFSGVGPKTADCVLLFSGGRAGVFP 177
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
VDTHV I + IG P AD L ++P E
Sbjct: 178 VDTHVHRIYRRIGVAPPDADHEGVRAVLEDQVPAE 212
>gi|125552526|gb|EAY98235.1| hypothetical protein OsI_20146 [Oryza sativa Indica Group]
Length = 1802
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 59/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ + I +AIR G+ A I+ L L+ G + LE+LR + D K L
Sbjct: 1328 WEAVRCADVQRISHAIRERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYL 1387
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I +GWVP LHL + P
Sbjct: 1388 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYP 1445
>gi|42569673|ref|NP_181190.3| protein ROS1 [Arabidopsis thaliana]
gi|71658826|sp|Q9SJQ6.2|ROS1_ARATH RecName: Full=Protein ROS1; AltName: Full=DEMETER-like protein 1;
AltName: Full=Repressor of silencing 1
gi|30909281|gb|AAP37178.1| ROS1 [Arabidopsis thaliana]
gi|330254169|gb|AEC09263.1| protein ROS1 [Arabidopsis thaliana]
Length = 1393
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 108 KSTFPT--WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLS 165
+ST T W+ + AA+ K + I+ G+ A I+ L L+ G + LE+LR +
Sbjct: 877 RSTMDTVDWKAIRAADVKEVAETIKSRGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVP 936
Query: 166 IDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH 225
D+ K L F G+G K+V CV + L FPVDT+V I+ +GWVP LH
Sbjct: 937 PDKAKEYLLSFNGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 996
Query: 226 LNQRIP 231
L + P
Sbjct: 997 LLEMYP 1002
>gi|354611948|ref|ZP_09029900.1| HhH-GPD family protein [Halobacterium sp. DL1]
gi|353191526|gb|EHB57032.1| HhH-GPD family protein [Halobacterium sp. DL1]
Length = 269
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 93/209 (44%), Gaps = 30/209 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTF-PTWEHVLA-----AEQKCIENAIRCGGLAPTKA 139
LV+TVLSQNT++ S A +L + P E LA A Q + I GL K+
Sbjct: 56 LVRTVLSQNTSDVASQPAHDALLERYAPGEETDLARALADAHQDELAETISSAGLYNQKS 115
Query: 140 ACIKNILKCLLESKGKLCLEY---------LRGLSIDEIKAELSRFRGIGPKTVACVLMF 190
+ L+ G++C EY +R D ++ L +G+GPKT CVL+F
Sbjct: 116 -------ETLIRLAGQICEEYGGEAGFDEFVRTEDPDAVRDALLDMKGVGPKTADCVLLF 168
Query: 191 HLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKEL-KFDLNCLLYTHGKL 248
+ FPVDTHV I++ +G P AD L +P E F ++ +
Sbjct: 169 SGGRAGVFPVDTHVHRIARRMGLAPPDADHEGVREALEAAVPAEACGFGHTAMIQFGREY 228
Query: 249 CRNCIKKGGNRQRKESAGNLCPLLNYCEK 277
C +K E+ CPL +YC++
Sbjct: 229 C--TARKPACLDGPEA----CPLYDYCDR 251
>gi|138996985|dbj|BAF52855.1| repressor of silencing 1 [Nicotiana tabacum]
Length = 1796
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 77/179 (43%), Gaps = 26/179 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ I + IR G+ A IK+ L + G + LE+LR + D+ K L
Sbjct: 1273 WEAVRCADVNEIAHTIRERGMNNMLAERIKDFLNRIFREHGSIDLEWLRDVPPDKAKEYL 1332
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-- 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1333 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 1392
Query: 232 ---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
+ ++L+ + T GK+ C K N N CPL C
Sbjct: 1393 ESIQKYLWPRLCKLDQRTLYELHYHMITFGKVF--CTKSKPN-------CNACPLRGEC 1442
>gi|448391644|ref|ZP_21566739.1| HhH-GPD family protein [Haloterrigena salina JCM 13891]
gi|445665056|gb|ELZ17734.1| HhH-GPD family protein [Haloterrigena salina JCM 13891]
Length = 274
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPT-----WEHVLAAEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + + E + AAE+ + I GL K+
Sbjct: 56 LVRTILSQNTSDKASQPAHDALVDRYGSPDVDLAESLAAAERSRLAETISSAGLYNQKSE 115
Query: 141 CIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
+ + +LE G +++ E++ L RG+GPKT CVL+F + F
Sbjct: 116 VLIRTAEWILEEFGSAAAFDAFVKDEEPAEVRDTLLSVRGVGPKTADCVLLFAGGRGGVF 175
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
PVDTHV I + +G P AAD L + +P
Sbjct: 176 PVDTHVHRIYRRMGIAPAAADHEDVRAVLEREVP 209
>gi|138996994|dbj|BAF52858.1| repressor of silencing 3 [Nicotiana tabacum]
Length = 1662
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A I + I+ G+ A IKN L ++ G + LE+LR + D+ K L
Sbjct: 1287 WEAVRCANVNEIAHTIKERGMNNKLAERIKNFLNRIVSEHGSIDLEWLRDVPPDKAKEYL 1346
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1347 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1404
>gi|224068969|ref|XP_002326243.1| predicted protein [Populus trichocarpa]
gi|222833436|gb|EEE71913.1| predicted protein [Populus trichocarpa]
Length = 134
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ I N I+ G+ A IKN+L L+ G + LE+LR + D+ K L
Sbjct: 6 WEAVRCADVNEIANTIKERGMNNILAERIKNLLNRLVREHGSIDLEWLRDIPPDKAKEYL 65
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVP 214
RG+G K+V C+ + L FPVDT+V I+ +GWVP
Sbjct: 66 LSIRGLGLKSVECIRLLTLHHLAFPVDTNVGRIAVRLGWVP 106
>gi|433590937|ref|YP_007280433.1| putative endoIII-related endonuclease [Natrinema pellirubrum DSM
15624]
gi|448334470|ref|ZP_21523645.1| HhH-GPD family protein [Natrinema pellirubrum DSM 15624]
gi|433305717|gb|AGB31529.1| putative endoIII-related endonuclease [Natrinema pellirubrum DSM
15624]
gi|445619802|gb|ELY73319.1| HhH-GPD family protein [Natrinema pellirubrum DSM 15624]
Length = 272
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPT-----WEHVLAAEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + E + AAEQ + I GL K+
Sbjct: 58 LVRTILSQNTSDKASQPAHDALIERYDGDDIDLVESLAAAEQSTLAETISGAGLYNQKSE 117
Query: 141 CIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
I + + +LE G +++ E++ L RG+GPKT CVL+F + F
Sbjct: 118 TIIDTAEWVLEEFGSAAAFDAFVKDEPPAEVRETLLEVRGVGPKTADCVLLFAGGRGGVF 177
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
PVDTHV I + +G P AD L + +P
Sbjct: 178 PVDTHVHRIYRRMGIAPPDADHEAVREVLERDVP 211
>gi|333471379|gb|AEF38423.1| 5-methylcytosine DNA glycosylase [Triticum aestivum]
Length = 1975
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 5/148 (3%)
Query: 84 DGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
D L K VL+ E A +L WE + + K I NAIR G+ + I+
Sbjct: 1429 DILRKEVLASRGNEERGENAKDALD-----WETIRQIDVKEISNAIRERGMNNMLSERIQ 1483
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ L ++ G + LE+LR + D+ K L RG+G K+V CV + L FPVDT+V
Sbjct: 1484 DFLNRVVRDHGSIDLEWLRYVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNV 1543
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIP 231
I +GWVP LHL + P
Sbjct: 1544 GRICVRLGWVPLQPLPESLQLHLLELYP 1571
>gi|449512809|ref|XP_004164145.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]
Length = 1736
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E + A+ + I NAI+ G+ A IK L L+ G + LE+LR + D+ K L
Sbjct: 1229 YEAIRLADVREISNAIKERGMNNMLAERIKEFLNRLVTDHGSIDLEWLRDVPPDKAKDYL 1288
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-- 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1289 LSVRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 1348
Query: 232 ---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
+ ++L+ L T GK+ C K N N CP+ C
Sbjct: 1349 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF--CTKSKPN-------CNACPMRGEC 1398
>gi|333471383|gb|AEF38425.1| 5-methylcytosine DNA glycosylase [Triticum aestivum]
Length = 1981
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 5/148 (3%)
Query: 84 DGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
D L K VL+ E A +L WE + + K I NAIR G+ + I+
Sbjct: 1435 DILRKEVLASRGNEERGENAKDALD-----WETIRQIDVKEISNAIRERGMNNMLSERIQ 1489
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ L ++ G + LE+LR + D+ K L RG+G K+V CV + L FPVDT+V
Sbjct: 1490 DFLNRVVRDHGSIDLEWLRYVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNV 1549
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIP 231
I +GWVP LHL + P
Sbjct: 1550 GRICVRLGWVPLQPLPESLQLHLLELYP 1577
>gi|449465553|ref|XP_004150492.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]
Length = 1679
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E + A+ + I NAI+ G+ A IK L L+ G + LE+LR + D+ K L
Sbjct: 1172 YEAIRLADVREISNAIKERGMNNMLAERIKEFLNRLVTDHGSIDLEWLRDVPPDKAKDYL 1231
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-- 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1232 LSVRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 1291
Query: 232 ---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
+ ++L+ L T GK+ C K N N CP+ C
Sbjct: 1292 ESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF--CTKSKPN-------CNACPMRGEC 1341
>gi|322437279|ref|YP_004219491.1| iron-sulfur cluster loop [Granulicella tundricola MP5ACTX9]
gi|321165006|gb|ADW70711.1| iron-sulfur cluster loop [Granulicella tundricola MP5ACTX9]
Length = 241
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 17/204 (8%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LD + ++LS T S + L++ F TWE++ A IE ++ KA +
Sbjct: 38 LDQFIYSLLSSRTKTEQSHQVMRDLRARFGTWENLRDAAVAEIEQTLQIITFPEVKALWL 97
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDT 201
K L + G+L LE+L ++I++ L +F G+G KT A V+ F L++ VD+
Sbjct: 98 KKDLMEITARCGELSLEFLAKYRTNKIRSWLEQFEGVGAKTSAAVVNFSTLRRRALCVDS 157
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF----DLNCLLYTHGK-LCRNCIKKG 256
H +++ +G P AD T L ++IP + D + L+ HG+ LC
Sbjct: 158 HHLRVTQRLGLTPR-ADAAITEERLMRKIPADWDAIKLDDHHSLIKKHGQELCTFA---- 212
Query: 257 GNRQRKESAGNLCPLLNYCEKSNK 280
E CPLL+ C + K
Sbjct: 213 ------EPHCRRCPLLDMCPEGQK 230
>gi|448313759|ref|ZP_21503471.1| HhH-GPD family protein [Natronolimnobius innermongolicus JCM 12255]
gi|445597069|gb|ELY51147.1| HhH-GPD family protein [Natronolimnobius innermongolicus JCM 12255]
Length = 286
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA-----AEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + LA AE+ + I GL K+
Sbjct: 58 LVRTILSQNTSDKASQPAHDALIERYNAEGVDLARALAEAERSALAETISSAGLYNQKSE 117
Query: 141 CIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
I + ++E G EY++ + + ++ L RG+GPKT CVL+F + F
Sbjct: 118 VIIATAEWVIEEFGSAVAFDEYVKDEAPETVRETLLDVRGVGPKTADCVLLFAGGRGGVF 177
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
PVDTHV I + +G P AD L + +P
Sbjct: 178 PVDTHVHRIYRRLGIAPADADHEDVRAVLEREVP 211
>gi|356537037|ref|XP_003537037.1| PREDICTED: uncharacterized protein LOC100806794 [Glycine max]
Length = 1903
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W+ V A+ I I+ G+ A IKN L L+E + LE+LR + D+ K L
Sbjct: 1351 WDAVRCADVSEIAETIKERGMNNRLAERIKNFLNRLVEEHESIDLEWLRDVPPDKAKEYL 1410
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-- 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1411 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVL 1470
Query: 232 ---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
+E ++L+ + T GK+ C K N N CP+ C
Sbjct: 1471 ESIQKYLWPRLCKLDQETLYELHYQMITFGKVF--CTKSKPN-------CNACPMRAEC 1520
>gi|448322514|ref|ZP_21511984.1| HhH-GPD family protein [Natronococcus amylolyticus DSM 10524]
gi|445601272|gb|ELY55261.1| HhH-GPD family protein [Natronococcus amylolyticus DSM 10524]
Length = 270
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA-----AEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + + LA AEQ + I GL K+A
Sbjct: 58 LVRTILSQNTSDVASQPAHDALVDRYGGLDRDLAESLADAEQSELAETISSAGLYNQKSA 117
Query: 141 CIKNILKCLLE--SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
I + +LE +++R + ++ L G+GPKT CVL+F + F
Sbjct: 118 MIVGAAEEILEEFDSAAGFDDFVREAEPETVRERLLEIHGVGPKTADCVLLFAGGRGGVF 177
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
PVDTHV I + +G P AD L + IP
Sbjct: 178 PVDTHVHRIYRRLGIAPADADHEAVRAVLERDIP 211
>gi|119719059|ref|YP_919554.1| HhH-GPD family protein [Thermofilum pendens Hrk 5]
gi|119524179|gb|ABL77551.1| HhH-GPD family protein [Thermofilum pendens Hrk 5]
Length = 236
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 92/198 (46%), Gaps = 12/198 (6%)
Query: 60 MTRDKNSVPLDMNEY---DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT-WE 115
+ R K + L E+ D LV T++SQNT E N+LKAFASL+ E
Sbjct: 18 LARLKGAFSLGRGEFVALDVARRGDFFGVLVATIISQNTNENNTLKAFASLEERVGVECE 77
Query: 116 HVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEIKAELS 174
+ A + AIR GL KA IK + L E G C + L ++E+ EL
Sbjct: 78 KIRKAGLSELAEAIRPAGLQEQKAKAIKQVASLLYEKYG--CDIGKLLSRGVEEVIRELK 135
Query: 175 RFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWV-PTAADRNKTYLHLNQRIPKE 233
+ GIG KT+ VL+ + P+DTHV +S +G P + + LH R +E
Sbjct: 136 QIEGIGDKTID-VLLANYGYPVLPIDTHVRRVSVRLGLARPGSYRAMQKSLHGFFR--EE 192
Query: 234 LKFDLNCLLYTHGK-LCR 250
+ D + L G+ LCR
Sbjct: 193 ARLDAHLYLIKLGRTLCR 210
>gi|448702713|ref|ZP_21700146.1| HhH-GPD family protein [Halobiforma lacisalsi AJ5]
gi|445777274|gb|EMA28244.1| HhH-GPD family protein [Halobiforma lacisalsi AJ5]
Length = 268
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPT-----WEHVLAAEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + E + AEQ + I GL K+
Sbjct: 58 LVRTILSQNTSDKASQPAHDALIERYDAPDVDLAESLAGAEQSALAETISSAGLYNQKSE 117
Query: 141 CIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
I + +LE G +++ + ++ L RG+GPKT CVL+F + F
Sbjct: 118 IIIETAEWVLEEFGSAAAFDAFVKDENPGTVRETLLEVRGVGPKTADCVLLFAGGRTGVF 177
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
PVDTHV I + +G P AD + L +P
Sbjct: 178 PVDTHVHRIYRRLGIAPADADHEEVRAVLEDEVP 211
>gi|303277163|ref|XP_003057875.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460532|gb|EEH57826.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 108
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLL-ESKGKLCLEYLRGLSIDEIKAE 172
W VL A + + IRC G+ A IKN+L+ + E G L LE+LR + + +
Sbjct: 5 WNAVLKAPIEDVVECIRCRGMHFMLARRIKNLLRRIASERDGALSLEFLRDVPTELARGY 64
Query: 173 LSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVP 214
L G G KTV+C+L+ L + DFPVD +V I +GWVP
Sbjct: 65 LLSLEGYGVKTVSCILLLALYRADFPVDVNVGRIMARLGWVP 106
>gi|145346471|ref|XP_001417710.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577938|gb|ABO96003.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 107
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 53/101 (52%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W VL A I IRC G+ A IK ILK ++ +G L LE+LR + L
Sbjct: 5 WYAVLDAPLVEIVKCIRCRGMHWMLARRIKGILKRVMAQRGCLSLEFLRDTPTRDANEYL 64
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVP 214
G+G KT +CVL+ L + DFPVD +V I +GWVP
Sbjct: 65 LALDGMGVKTTSCVLLLALHRTDFPVDVNVGRIMARLGWVP 105
>gi|333471381|gb|AEF38424.1| 5-methylcytosine DNA glycosylase [Triticum aestivum]
Length = 1982
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 84 DGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
D L K VL+ E A +L WE + + K I N IR G+ + I+
Sbjct: 1436 DILRKEVLASRGNEGRGENAKDALD-----WETIRQIDVKEISNTIRERGMNNMLSERIQ 1490
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ L ++ G + LE+LR + D+ K L RG+G K+V CV + L FPVDT+V
Sbjct: 1491 DFLNRVVRDHGSIDLEWLRYVDPDKAKEYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNV 1550
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIP 231
I +GWVP LHL + P
Sbjct: 1551 GRICVRLGWVPLQPLPESLQLHLLELYP 1578
>gi|296090400|emb|CBI40219.3| unnamed protein product [Vitis vinifera]
Length = 1621
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E + A I AI+ G+ A IK+ L L+ G + LE+LR D+ K L
Sbjct: 1109 YEAIRCAHVNVISEAIKERGMNNMLAERIKDFLNRLVREHGSIDLEWLRDSPPDKAKDYL 1168
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L Q FPVDT+V I+ +GWVP LHL + P
Sbjct: 1169 LSIRGLGLKSVECVRLLTLHQLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1226
>gi|357155497|ref|XP_003577140.1| PREDICTED: uncharacterized protein LOC100841571 [Brachypodium
distachyon]
Length = 1974
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 58/118 (49%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE + + K I + IR G+ A IK L L+ G + LE+LR + D+ K L
Sbjct: 1453 WETIRQIDVKEISDTIRERGMNNMLAERIKAFLNRLVTDHGSIDLEWLRYVDPDKAKEYL 1512
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I +GWVP LHL + P
Sbjct: 1513 LSIRGLGLKSVECVRLLTLHHMAFPVDTNVGRICVRLGWVPLQPLPESLQLHLLELYP 1570
>gi|356574657|ref|XP_003555462.1| PREDICTED: transcriptional activator DEMETER-like [Glycine max]
Length = 1851
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E + A K I I+ G+ A IK L L+ G + LE+LR + D+ K L
Sbjct: 1328 YEAIRCASVKEISKTIKERGMNNMLAERIKEFLNRLVTEHGSIDLEWLRHVPQDKAKDYL 1387
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-- 231
FRG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1388 LSFRGLGLKSVECVRLLTLHHIAFPVDTNVGRIAVRLGWVPLQPLPEALQLHLLELYPVL 1447
Query: 232 ---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
+ ++L+ + T GK+ C KK N N CP+ C
Sbjct: 1448 ETVQKYLWPRLCKLDQRTLYELHYQMITFGKVF--CTKKKPN-------CNACPMRAEC 1497
>gi|320333147|ref|YP_004169858.1| HhH-GPD family protein [Deinococcus maricopensis DSM 21211]
gi|319754436|gb|ADV66193.1| HhH-GPD family protein [Deinococcus maricopensis DSM 21211]
Length = 258
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 4/167 (2%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
L L+ T+LSQ T + A+ L W+ + A + + +AIR KA I
Sbjct: 43 LHELISTILSQRTNWRDEETAYQEL-VKIGDWDAIAEAPVEQVAHAIRASNYPEVKAPRI 101
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ LK + +G L +L L ++ L+ G+G KT + VL+F+ + FPVDTH
Sbjct: 102 QATLKAICAQRGNYDLSFLVDLPHEDGLKWLTDLPGVGVKTASLVLLFNFSKPVFPVDTH 161
Query: 203 VFEISKAIGWVPTAAD--RNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
V I+ +G +P + +K L L P L ++L+ L HG+
Sbjct: 162 VHRITTRVGAIPRMGEAVAHKALLKLLAPDPPFL-YELHINLLKHGQ 207
>gi|224113515|ref|XP_002316517.1| DNA glycosylase [Populus trichocarpa]
gi|222865557|gb|EEF02688.1| DNA glycosylase [Populus trichocarpa]
Length = 519
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 61/118 (51%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E V +A K I +AI+ G+ A I+ L L+ G + LE+LR + D+ K L
Sbjct: 6 YEAVRSARVKEISDAIKERGMNNMLAERIQEFLNRLVREHGSIDLEWLRDVPPDKAKDYL 65
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 66 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 123
>gi|225449724|ref|XP_002267310.1| PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera]
Length = 2198
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E + A I AI+ G+ A IK+ L L+ G + LE+LR D+ K L
Sbjct: 1686 YEAIRCAHVNVISEAIKERGMNNMLAERIKDFLNRLVREHGSIDLEWLRDSPPDKAKDYL 1745
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L Q FPVDT+V I+ +GWVP LHL + P
Sbjct: 1746 LSIRGLGLKSVECVRLLTLHQLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1803
>gi|297527052|ref|YP_003669076.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylothermus
hellenicus DSM 12710]
gi|297255968|gb|ADI32177.1| DNA-(apurinic or apyrimidinic site) lyase [Staphylothermus
hellenicus DSM 12710]
Length = 234
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 21/210 (10%)
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAP 136
++S+ + ++ +LSQNT++ N+++A+ +LK + T + +L+ + A++ G+
Sbjct: 31 DKSLFEYIIGVMLSQNTSDKNAIRAYFNLKKIYGEITPDKILSTPIDKLIEALKPAGMYN 90
Query: 137 TKAACIKNILKCLLESK-----GKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
+A I + K E GKL E + E + L G+G KT VL+ +
Sbjct: 91 QRAQRIIELAKIFTEKNVEEELGKLIEEG----KLREARKYLVSLPGVGLKTADVVLLMY 146
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
Q FPVDTH+ ++K +G++ + + Q P + + + LL THG+ +
Sbjct: 147 YGQPVFPVDTHIRRVTKRLGYIGKDDYEAISSWWMKQLKPNDY-LETHLLLITHGR--KT 203
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C + ++ N+CP+ YC+ +T
Sbjct: 204 C-------KARKPLCNICPIRKYCKYYYET 226
>gi|14021063|dbj|BAB47587.1| putative FPPsynthase1 [Euphorbia tirucalli]
Length = 119
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%)
Query: 106 SLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLS 165
++ + WE V A+ I N I+ G+ A IK+ L L+ G + LE+LR +
Sbjct: 8 QVQDDYLDWEAVRCADVDEIANTIKERGMNNVLAKRIKDFLNRLVREHGNIDLEWLRDVP 67
Query: 166 IDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVP 214
D+ K L RG+G K+V CV + L FPVDT+V I+ +GWVP
Sbjct: 68 PDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 116
>gi|282165629|ref|YP_003358014.1| putative endonuclease III [Methanocella paludicola SANAE]
gi|282157943|dbj|BAI63031.1| putative endonuclease III [Methanocella paludicola SANAE]
Length = 293
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWE-HVLA-AEQKCIENAIRCGGLAPTKAACIK 143
L+ T+L+QN T ++ + F L+ + + H +A A++K +E I G P KAA I
Sbjct: 100 LIITILTQNKTADSARRTFHKLQHRYNGIDVHKMAGADKKELEELIHYSG--PYKAAYII 157
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ ++E G LE+++ +S +E + L G+GPKT CVL+F L PVDTH+
Sbjct: 158 ECSRQIIERWGG-SLEWMKKVSTEEAREALLSLYGVGPKTADCVLLFSLGHSVTPVDTHI 216
Query: 204 FEISKAIGWVPTAAD 218
+S+ +G + D
Sbjct: 217 CRVSQRLGLSTSTGD 231
>gi|257053763|ref|YP_003131596.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus utahensis
DSM 12940]
gi|256692526|gb|ACV12863.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus utahensis
DSM 12940]
Length = 274
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEH--------VLAAEQKCIENAIRCGGLAPT 137
LV+T+LSQNT++ S A +L + + + + AEQ + I GL
Sbjct: 58 LVRTILSQNTSDVASQPAHDALMDRYGSEDEEEVDLVDALADAEQAELAETISGAGLYNQ 117
Query: 138 KAACIKNILKCLLESKG--KLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
K+A I I + + E G ++R + ++ L G+GPKT CVL+F +D
Sbjct: 118 KSARIIEIAQRIREEYGGEDDFDAFVREEPAEAVRETLLAMNGVGPKTADCVLLFAGGRD 177
Query: 196 D-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPK 232
FPVDTHV I + +G P AD L +++P+
Sbjct: 178 GVFPVDTHVHRIYRRLGIAPPGADHEAVREVLEKKVPE 215
>gi|374633877|ref|ZP_09706242.1| putative endoIII-related endonuclease [Metallosphaera
yellowstonensis MK1]
gi|373523665|gb|EHP68585.1| putative endoIII-related endonuclease [Metallosphaera
yellowstonensis MK1]
Length = 229
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA-AEQKCIENAIRCGGLAPTKAACIKN 144
LV T+L+QN+T+ +++ AF +L+ LA A + I AIR GL KA I+
Sbjct: 32 LVATLLTQNSTDKSAMVAFENLEKEIGISPDKLASASIEEIAKAIRPAGLHNNKAKNIRE 91
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
I K + ES L LE + S D+ + L GIG KT VL+ FPVDTH+F
Sbjct: 92 ISKIIHESFHDL-LEDILNQSPDKAREILVSMPGIGTKTADVVLLICKGYRTFPVDTHIF 150
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNC--LLYTHGK 247
IS+ +G + Y ++ + +K LN LL THG+
Sbjct: 151 RISRRLGI------EGRNYSEISSVWVRHVKDPLNAHLLLITHGR 189
>gi|284165866|ref|YP_003404145.1| HhH-GPD family protein [Haloterrigena turkmenica DSM 5511]
gi|284015521|gb|ADB61472.1| HhH-GPD family protein [Haloterrigena turkmenica DSM 5511]
Length = 269
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAA-----EQKCIENAIRCGGLAPTKAA 140
LV+TVLSQNT++ S A +L + + LAA EQ + I GL K+
Sbjct: 57 LVRTVLSQNTSDKASQPAHDALIDRYGGPDVDLAASLADAEQSRLAETISSAGLYNQKSE 116
Query: 141 CIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
+ + +LE G +++ ++ L RGIGPKT CVL+F + F
Sbjct: 117 VLIRTAEWVLEEFGSAAAFDAFVKDEDPAAVRETLLSIRGIGPKTADCVLLFAGGRGGVF 176
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
PVDTHV I + +G P AAD L + +P
Sbjct: 177 PVDTHVHRIYRRMGIAPAAADHEGVRAVLEREVP 210
>gi|224138764|ref|XP_002326684.1| DNA glycosylase [Populus trichocarpa]
gi|222834006|gb|EEE72483.1| DNA glycosylase [Populus trichocarpa]
Length = 121
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 56/113 (49%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V AE + + I G A IK L +++ + LE+LR D++K L
Sbjct: 6 WEAVRQAETSKVASIIEGRGQQTIIAGRIKQFLDRVVDMHKSIDLEWLRYAPPDDVKDYL 65
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHL 226
F G+G K+V CV + LQQ FPVD +V I+ +GWVP A HL
Sbjct: 66 LEFMGLGLKSVECVRLLSLQQVAFPVDVNVARIAVRLGWVPLKALPGSLQFHL 118
>gi|448681086|ref|ZP_21691232.1| endonuclease III [Haloarcula argentinensis DSM 12282]
gi|445768144|gb|EMA19231.1| endonuclease III [Haloarcula argentinensis DSM 12282]
Length = 277
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA--------------AEQKCIENAIRC 131
LV+T+LSQNT++ S A L + + E+ + A+Q + I
Sbjct: 57 LVRTILSQNTSDKASQPAHDELMARYGGDENASSEGDTDSDLARALADADQPELAETISS 116
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
GL K+ I + + + E G E++R +E+++ L G+GPKT CVL+
Sbjct: 117 AGLYNQKSERIIALAQRICEEYGGESGFDEFVRESDPEEVRSTLLDMNGVGPKTADCVLL 176
Query: 190 FHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
F + FPVDTHV I++ +G P AD +L + +P E
Sbjct: 177 FAGGRGGVFPVDTHVHRIARRMGLAPADADHETVREYLERDVPAE 221
>gi|399069064|ref|ZP_10749265.1| putative endoIII-related endonuclease [Caulobacter sp. AP07]
gi|398045317|gb|EJL38052.1| putative endoIII-related endonuclease [Caulobacter sp. AP07]
Length = 242
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LVK+ +S T +A S A+ LK F TWE + A + I+ KA + +
Sbjct: 38 LVKSAISGRTKDAVSWAAYHRLKDRFATWEDLAEAPDAVVLELIKEVSYPEDKARHLPHA 97
Query: 146 LKCL-LESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHV 203
L+ + + S KL L++L L +D + L G+G K A VL F L VDTHV
Sbjct: 98 LRLIQVRSGWKLSLDHLSELELDSARWWLQGLPGVGVKVAASVLNFSPLNMRALVVDTHV 157
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHGKL 248
++ +G +P + D Y L +P ++L+ L+ G+L
Sbjct: 158 HRVAGRLGLIPASYDTAHAYRALMDLVPDSWTAEDLYELHWLMKGLGQL 206
>gi|305664312|ref|YP_003860600.1| HhH-GPD family protein [Ignisphaera aggregans DSM 17230]
gi|304378881|gb|ADM28720.1| HhH-GPD family protein [Ignisphaera aggregans DSM 17230]
Length = 239
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 21/184 (11%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP---TWEHVLAAEQKCIENAIRCG 132
EG E + LV +LSQNT++ N+ +A LK+ T + +L+ + I NAI
Sbjct: 42 EGAEP--FEVLVGIILSQNTSDRNAYRALLRLKNVLDDVITPDRILSIDPSVIINAINVA 99
Query: 133 GLAPTKAACIKNILKCLLESKGKL-----CLEYLRGLSIDEIKAELSRFRGIGPKTVACV 187
GLA + L+ LLE + L+ LS+D+ + L GIG KT
Sbjct: 100 GLANRR-------LQSLLELSRHIKENPKFFNDLKNLSVDDARKALLSIYGIGYKTADVF 152
Query: 188 LMFHLQQDDFPVDTHVFEISKAIGWVPTAA---DRNKTYLHLNQRIPKELKFDLNCLLYT 244
L+ ++ FP+DTH+ + K +G V D K L + + P+EL L+ L
Sbjct: 153 LLMIYKKPTFPIDTHIMRVLKRLGIVHEDMGYEDIRKFILGVVEHNPEEL-LSLHISLIA 211
Query: 245 HGKL 248
HG++
Sbjct: 212 HGRM 215
>gi|15789648|ref|NP_279472.1| endonuclease III [Halobacterium sp. NRC-1]
gi|169235361|ref|YP_001688561.1| DNA-(apurinic or apyrimidinic site) lyase endonuclease III
[Halobacterium salinarum R1]
gi|10580010|gb|AAG18952.1| endonuclease III [Halobacterium sp. NRC-1]
gi|167726427|emb|CAP13212.1| endonuclease III [Halobacterium salinarum R1]
Length = 265
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTF-----PTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
LV+TVLSQNT++ S A +L + + A+Q + + I GL K+A
Sbjct: 54 LVRTVLSQNTSDKASQPAHDALMQRYGAAADDLAAALADADQDVLADTISMAGLYNQKSA 113
Query: 141 CIKNILKCLLESKGKL--CLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
I I + E G ++R D ++A L G+GPKT CVL+F F
Sbjct: 114 TIIRIADRVCEEYGGADGFDAFVREGDPDAVRAALLDMTGVGPKTADCVLLFAGGAPGVF 173
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
PVDTHV I++ +G P AAD L +P
Sbjct: 174 PVDTHVHRIARRMGIAPAAADHEAVRAALEAAVP 207
>gi|6143875|gb|AAF04422.1|AC010927_15 hypothetical protein [Arabidopsis thaliana]
Length = 1309
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 15/162 (9%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W+ + + I N I G+ A IK L L++ G + LE+LR + D+ K L
Sbjct: 817 WDALRCTDVHKIANIIIKRGMNNMLAERIKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYL 876
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
G+G K+V CV + L Q FPVDT+V I+ +GWVP ++ +HL E
Sbjct: 877 LSINGLGLKSVECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHL-----LE 931
Query: 234 LKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
L ++L+ + T GK+ C K N N CP+ C
Sbjct: 932 L-YELHYHMITFGKVF--CTKVKPN-------CNACPMKAEC 963
>gi|340345847|ref|ZP_08668979.1| DNA-(Apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520988|gb|EGP94711.1| DNA-(Apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 217
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 14/201 (6%)
Query: 54 QRLKHNMTRDKNSV-PLDMNEYDEGEEESV--LDGLVKTVLSQNTTEANSLKAFASLKST 110
+++ H M NSV P M E E L+ T+LS T + + KA L S
Sbjct: 4 EKIIHGMMSTMNSVKPPRMTALRELHEAETGNFSILIGTILSARTKDETTTKAVKMLFSK 63
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIK 170
+ T + + A+ K IE IR G K+ I + K +++SK G+ D +
Sbjct: 64 YKTPKELANAKVKDIEKIIRSIGFYHVKSRRIIEVSK-IIDSK-------YSGIVPDTLD 115
Query: 171 AELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRI 230
EL + G+G KT CVL++ + PVD HV IS +G V T + +T L L ++I
Sbjct: 116 -ELIQLPGVGRKTANCVLVYAFDKPAIPVDIHVHRISNRLGLVNTKSPE-ETELVLMKKI 173
Query: 231 PKELKFDLNCLLYTHGK-LCR 250
PK+ +N +G+ +C+
Sbjct: 174 PKKYWIKINDTFVMYGQNICK 194
>gi|448317595|ref|ZP_21507145.1| HhH-GPD family protein [Natronococcus jeotgali DSM 18795]
gi|445602986|gb|ELY56956.1| HhH-GPD family protein [Natronococcus jeotgali DSM 18795]
Length = 271
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA-----AEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + + LA AE+ + I GL K+
Sbjct: 58 LVRTILSQNTSDKASQPAHDALVERYDGPDRDLAESLADAERSELAETISSAGLYNQKSE 117
Query: 141 CIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
I + +LE G +++R ++++ L G+GPKT CVL+F + F
Sbjct: 118 MIIGAAEEILEEFGSAAGFDDFVREEEPEDVRQRLLEIHGVGPKTADCVLLFASGRGGVF 177
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
PVDTHV I + +G P AD L + +P
Sbjct: 178 PVDTHVHRIYRRLGIAPPDADHEVVRAVLEREVP 211
>gi|297833776|ref|XP_002884770.1| hypothetical protein ARALYDRAFT_341139 [Arabidopsis lyrata subsp.
lyrata]
gi|297330610|gb|EFH61029.1| hypothetical protein ARALYDRAFT_341139 [Arabidopsis lyrata subsp.
lyrata]
Length = 1078
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W+ + + I N I G+ A IK L L+ G + LE+LR + D+ K L
Sbjct: 597 WDALRCTDVNKIANIIIKRGMNNMLAERIKAFLNRLVRKHGSIDLEWLRDIHPDQAKEYL 656
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
G+G K+V CV + L Q FPVDT+V I+ +GWVP ++ +HL + P
Sbjct: 657 LSINGLGLKSVECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLELYP 714
>gi|448400249|ref|ZP_21571316.1| HhH-GPD family protein [Haloterrigena limicola JCM 13563]
gi|445667789|gb|ELZ20429.1| HhH-GPD family protein [Haloterrigena limicola JCM 13563]
Length = 270
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA-----AEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + + LA AEQ + I GL K+
Sbjct: 58 LVRTILSQNTSDKASQPAHDALLERYDGDDLDLAESLAHAEQSTLAETISSAGLYNQKSE 117
Query: 141 CIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
I + + +LE G +++ + ++ L RG+GPKT CVL+F + F
Sbjct: 118 TIIDTAEWVLEEFGSAAAFDTFVKDEAPAAVRETLLEVRGVGPKTADCVLLFAGGRGGVF 177
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
PVDTHV I + +G P AD L + +P
Sbjct: 178 PVDTHVHRIYRRLGIAPPDADHETVREILERDVP 211
>gi|148269689|ref|YP_001244149.1| endonuclease III [Thermotoga petrophila RKU-1]
gi|170288365|ref|YP_001738603.1| endonuclease III [Thermotoga sp. RQ2]
gi|281411600|ref|YP_003345679.1| endonuclease III [Thermotoga naphthophila RKU-10]
gi|147735233|gb|ABQ46573.1| endonuclease III [Thermotoga petrophila RKU-1]
gi|170175868|gb|ACB08920.1| endonuclease III [Thermotoga sp. RQ2]
gi|281372703|gb|ADA66265.1| endonuclease III [Thermotoga naphthophila RKU-10]
Length = 213
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLSQ T + N+ KA L + T + + A+ + + N I+ G+ KAA I I
Sbjct: 26 LISTVLSQRTRDENTEKASKKLFEVYRTPQELAKAKPEDLYNLIKESGMYRQKAARIVEI 85
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G G D ++ EL + G+G KT VL ++ VDTHV
Sbjct: 86 SRILVERYG--------GRVPDSLE-ELLKLPGVGRKTANIVLWVGFRKPALAVDTHVHR 136
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCIKK 255
IS +GWV T +T L + +P++L +N + G+ LC C K
Sbjct: 137 ISNRLGWVKTRTP-EETEEALKKLLPEDLWGPINGSMVEFGRRICKPQNPLCEECFLK 193
>gi|448733380|ref|ZP_21715625.1| HhH-GPD family protein [Halococcus salifodinae DSM 8989]
gi|445803114|gb|EMA53414.1| HhH-GPD family protein [Halococcus salifodinae DSM 8989]
Length = 279
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAA-----EQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A L + + LAA +Q + I GL K+A
Sbjct: 66 LVRTILSQNTSDKASQPAHDVLMDRYCEEDGDLAATLADADQPTLAETIESAGLYNQKSA 125
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSID----EIKAELSRFRGIGPKTVACVLMFHLQQDD 196
+ I + +++ G E G + ++ L F G+GPKT CVL+F +
Sbjct: 126 TMIAIAERIVDEYGGA--EEFNGFVAEGDPETVRDALLDFSGVGPKTADCVLLFSGGRAG 183
Query: 197 -FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
FPVDTHV I + +G P AD + + ++P E
Sbjct: 184 VFPVDTHVHRIYRRLGIAPPEADHEEVRAVVEDQVPAE 221
>gi|335437951|ref|ZP_08560708.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus tiamatea
SARL4B]
gi|334893555|gb|EGM31766.1| DNA-(apurinic or apyrimidinic site) lyase [Halorhabdus tiamatea
SARL4B]
Length = 281
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWE--------------HVLA-AEQKC 124
+ + LV+T+LSQNTT+ S A +L + + + LA AEQ
Sbjct: 52 QDAFESLVRTILSQNTTDTASQPAHDALLERYGSLDGEDADAAESETDLVDALADAEQAE 111
Query: 125 IENAIRCGGLAPTKAACIKNILKCLLESKG--KLCLEYLRGLSIDEIKAELSRFRGIGPK 182
+ I GL K+A I I + + E G ++R + ++ L G+GPK
Sbjct: 112 LAETISGAGLYNQKSARISQIAERVREKYGGEDEFDAFVREEPAEAVRETLLAMTGVGPK 171
Query: 183 TVACVLMFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPK 232
T CVL+F +D FPVDTHV I + +G P AD L + +P+
Sbjct: 172 TADCVLLFAGGRDGVFPVDTHVHRIYRRLGVAPPDADHEAVRAVLEETVPE 222
>gi|448470695|ref|ZP_21600571.1| HhH-GPD family protein [Halorubrum kocurii JCM 14978]
gi|445807550|gb|EMA57634.1| HhH-GPD family protein [Halorubrum kocurii JCM 14978]
Length = 109
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 164 LSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTY 223
++ D+ K L+ +G+GPKT + VL FH + VDTHV +SK G VP +A +
Sbjct: 1 MATDDAKEWLTAIKGVGPKTASVVLNFHFGKPTMAVDTHVERVSKRFGLVPESASNQAAH 60
Query: 224 LHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
L+ +P EL + L+ LL HG+ C +G +
Sbjct: 61 DALDDLVPDELIYPLHVLLIRHGR--ERCSARGAD 93
>gi|448411957|ref|ZP_21576313.1| endonuclease III [Halosimplex carlsbadense 2-9-1]
gi|445669891|gb|ELZ22499.1| endonuclease III [Halosimplex carlsbadense 2-9-1]
Length = 279
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 75/173 (43%), Gaps = 34/173 (19%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTF-PTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
LV+T+LSQNT++ S A +L + P E V AA G LA + AA +
Sbjct: 58 LVRTILSQNTSDVASQPAHDALMDRYGPDGEAVSAAAG---------GDLAESLAAADQQ 108
Query: 145 ILKCLLESKG--------------KLCLEYLRGLSIDE---------IKAELSRFRGIGP 181
L + S G ++C EY DE ++ L G+GP
Sbjct: 109 ELAETISSAGLYNQKSERIVALAERICEEYGGADGFDEFVKTGEPNVVRETLLDMNGVGP 168
Query: 182 KTVACVLMFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
KT CVL+F + FPVDTHV I++ +G P AD L +P+E
Sbjct: 169 KTADCVLLFSGGRGGVFPVDTHVHRIARRMGLAPADADHEGVREALEAAVPEE 221
>gi|385799712|ref|YP_005836116.1| DNA-(apurinic or apyrimidinic site) lyase [Halanaerobium praevalens
DSM 2228]
gi|309389076|gb|ADO76956.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Halanaerobium praevalens DSM 2228]
Length = 218
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 77/178 (43%), Gaps = 18/178 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS TT+ K L + T + +L QK +E I GL KA I
Sbjct: 38 LIATILSAQTTDIQVNKVTKKLFKNYNTPKKILNLSQKELEKKINSIGLYRNKAKYILKT 97
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+E + + + EL + G+G KT VL + FPVDTHVF
Sbjct: 98 AKILIEEFNS---------QVPKTRKELLKLSGVGRKTANVVLSSAFAKAAFPVDTHVFR 148
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL--------CRNCIKK 255
+S +G + + + + T L IP++ D + L HG+ C+NC K
Sbjct: 149 VSARLG-LSSGKNVSTTEKELTDLIPRKYWIDFHHWLIDHGRALCKAQNPDCKNCFAK 205
>gi|240255311|ref|NP_187612.5| protein demeter-like 2 [Arabidopsis thaliana]
gi|378405159|sp|Q9SR66.2|DML2_ARATH RecName: Full=DEMETER-like protein 2
gi|332641327|gb|AEE74848.1| protein demeter-like 2 [Arabidopsis thaliana]
Length = 1332
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W+ + + I N I G+ A IK L L++ G + LE+LR + D+ K L
Sbjct: 817 WDALRCTDVHKIANIIIKRGMNNMLAERIKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYL 876
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
G+G K+V CV + L Q FPVDT+V I+ +GWVP ++ +HL + P
Sbjct: 877 LSINGLGLKSVECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLELYP 934
>gi|297802586|ref|XP_002869177.1| hypothetical protein ARALYDRAFT_353424 [Arabidopsis lyrata subsp.
lyrata]
gi|297315013|gb|EFH45436.1| hypothetical protein ARALYDRAFT_353424 [Arabidopsis lyrata subsp.
lyrata]
Length = 1072
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 13/204 (6%)
Query: 29 EECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVK 88
EE + + D L + G P + + + +T S+P E +E E +
Sbjct: 495 EEPQDVND--LVVDGQRPTHIGNNDAKSSEFITLSDESIP----EVEEHENTAKRKNEKT 548
Query: 89 TVLSQNTTEANSLKAFASLKSTFP-------TWEHVLAAEQKCIENAIRCGGLAPTKAAC 141
++ T + +L+ + + + P W V + QK E IR G +
Sbjct: 549 GIMEDETVDWKTLRKMYTKEGSRPKMHMDSVNWSDVRLSGQKVFETTIRRRGQFRILSER 608
Query: 142 IKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
I L ++ G L LE+LR D +K L GIG K+ CV + L+ FPVDT
Sbjct: 609 ILKFLNDEVQHNGTLDLEWLRNAPSDLVKRYLLEIEGIGLKSAECVRLLGLKHHAFPVDT 668
Query: 202 HVFEISKAIGWVPTAADRNKTYLH 225
+V I+ +GWVP N +H
Sbjct: 669 NVGRIAVRLGWVPLEPLPNGVQMH 692
>gi|297806437|ref|XP_002871102.1| hypothetical protein ARALYDRAFT_487239 [Arabidopsis lyrata subsp.
lyrata]
gi|297316939|gb|EFH47361.1| hypothetical protein ARALYDRAFT_487239 [Arabidopsis lyrata subsp.
lyrata]
Length = 1997
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E + A I +AI+ G+ A IK+ L+ ++ G + LE+LR + D+ K L
Sbjct: 1484 YEAIRRASISEISDAIKERGMNNMLAVRIKDFLERTVKDHGGIDLEWLRDVPPDKAKDYL 1543
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1544 LSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYP 1601
>gi|302856195|ref|XP_002959522.1| hypothetical protein VOLCADRAFT_36766 [Volvox carteri f.
nagariensis]
gi|300254966|gb|EFJ39413.1| hypothetical protein VOLCADRAFT_36766 [Volvox carteri f.
nagariensis]
Length = 108
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A + + + IRC G+ A IK L + + + LE+LR +++E L
Sbjct: 6 WEAVRTAPDELLADLIRCRGMHVMLARRIKAFLNQVRTGRSTISLEWLRNANVEEATNYL 65
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPT 215
G+G K+VAC+++ L +FPVD +V + +GW+P
Sbjct: 66 MAVEGLGRKSVACIVLLALHGKEFPVDINVARVFARLGWIPI 107
>gi|160902834|ref|YP_001568415.1| endonuclease III [Petrotoga mobilis SJ95]
gi|160360478|gb|ABX32092.1| endonuclease III [Petrotoga mobilis SJ95]
Length = 210
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L++TVLSQ T + N+ KA SL S + + + + + I+ G+ K+ I NI
Sbjct: 29 LIETVLSQRTKDENTEKASKSLFSCYTNVFEISKLNPQDLYDLIKPAGMYKQKSERIINI 88
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+E G DE++ EL G+G KT VL ++ VDTHV
Sbjct: 89 SKILIEK--------YNGKVPDELE-ELIELPGVGRKTANIVLYVSFGKEALAVDTHVHR 139
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG-KLCR 250
IS +GWV T +T L + IP EL LN + G K+C+
Sbjct: 140 ISNRLGWVKTKTPE-ETEEQLKKIIPSELWGPLNGSMVNFGQKICK 184
>gi|390938170|ref|YP_006401908.1| HhH-GPD family protein [Desulfurococcus fermentans DSM 16532]
gi|390191277|gb|AFL66333.1| HhH-GPD family protein [Desulfurococcus fermentans DSM 16532]
Length = 234
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 19/211 (9%)
Query: 60 MTRDKNSVPLDMNEYDEGE----EESVLDGLVKTVLSQNTTEANS---LKAFASLKSTFP 112
+ R + LD +E+ E + + + +LSQNT++ N+ LK L
Sbjct: 10 LNRLRKEYKLDADEFVVSERCIQSNRLFEIITAVILSQNTSDRNACRALKKLRELTGGVI 69
Query: 113 TWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLES--KGKLCLEYLRGLSIDEIK 170
T E VL +E+A+R G+ ++ I+ + +S + +L E R S++E +
Sbjct: 70 TPETVLLLPVDKLEDALRPAGMYRNRSRVIRELASMFNQSGFQERLISEVSRS-SVEEAR 128
Query: 171 AELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRI 230
L G+G KT VL+ + ++ FPVDTH+ I+ +G+ + + ++ + ++
Sbjct: 129 RLLMELPGVGWKTADVVLLRYFRKPVFPVDTHITRITMRMGFTGSRSYKHISRFWMDNTS 188
Query: 231 PKELKFDLNCLLYTHGK--------LCRNCI 253
P E DL+ L THG+ LC C+
Sbjct: 189 P-ENYLDLHLYLITHGRRTCRARKPLCNKCV 218
>gi|76802666|ref|YP_330761.1| repair DNA N-glycosylase / DNA-(apurinic or apyrimidinic site)
lyase [Natronomonas pharaonis DSM 2160]
gi|76558531|emb|CAI50123.1| endonuclease III [Natronomonas pharaonis DSM 2160]
Length = 268
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE---QKCIENAIRCGGLAPTKAACI 142
LV+TVLSQNT++ S A +L + + A Q + I GL K+ +
Sbjct: 56 LVRTVLSQNTSDTASQPAHDALLERYGGGDLAAALADADQPTLAETISGAGLYNQKSTRL 115
Query: 143 KNILKCLLESKGKL--CLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + ++E+ G ++ DE++ L G+GPKT CVL+F +D FPV
Sbjct: 116 IALAEFVVETYGGADGFDGFVTEAPPDEVRETLLELNGVGPKTADCVLLFSGGRDGVFPV 175
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
DTHV I++ +G P AD L +P E
Sbjct: 176 DTHVHRIARRMGLAPADADHEAVRSALEADVPGE 209
>gi|448330815|ref|ZP_21520091.1| HhH-GPD family protein [Natrinema versiforme JCM 10478]
gi|445610651|gb|ELY64420.1| HhH-GPD family protein [Natrinema versiforme JCM 10478]
Length = 272
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPT-----WEHVLAAEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + E + +AEQ + I GL K+
Sbjct: 58 LVRTILSQNTSDKASQPAHDALLERYDGPDIDLAESLASAEQSTLAETISGAGLYNQKSE 117
Query: 141 CIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
+ + + +L G +++ ++ L RG+GPKT CVL+F + F
Sbjct: 118 TLIDTAEWVLAEFGSAAAFDTFVKDEEPSAVRETLLSVRGVGPKTADCVLLFAGGRGGVF 177
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
PVDTHV I + +G P AD L + +P E
Sbjct: 178 PVDTHVHRIYRRMGIAPPDADHEAVRAVLERDVPAE 213
>gi|383319791|ref|YP_005380632.1| hypothetical protein Mtc_1360 [Methanocella conradii HZ254]
gi|379321161|gb|AFD00114.1| hypothetical protein Mtc_1360 [Methanocella conradii HZ254]
Length = 282
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 166 IDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH 225
++ + EL G+GPKT CVL+F +D PVDTHVF ++K +G VP A +
Sbjct: 1 MEAARRELLSIEGVGPKTADCVLLFSCGRDVIPVDTHVFRVTKRLGMVPEDASHEEARRI 60
Query: 226 LNQRIPKELKFDLN-CLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNK 280
L + IP +K ++ CL+ KL R K G + N+C LL+ C+ + K
Sbjct: 61 LMEEIPPGMKGSVHVCLI----KLGREICKARGPKH------NICFLLDLCDYARK 106
>gi|159042442|ref|YP_001541694.1| DNA-(apurinic or apyrimidinic site) lyase [Caldivirga
maquilingensis IC-167]
gi|157921277|gb|ABW02704.1| DNA-(apurinic or apyrimidinic site) lyase [Caldivirga
maquilingensis IC-167]
Length = 230
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAPTK 138
SV +GLV +L+QNT++ + + + LK T +L+ + +EN +R G +
Sbjct: 34 SVFEGLVAVMLTQNTSDKVATRVYERLKERLGSITPNTILSLSKSELENILRPIGSFRQR 93
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A + + + E K LE++RG+ DE + L G+GPKT A V++ +L + FP
Sbjct: 94 ARRLIELANTVNE-KYNGSLEFIRGMGTDEARRTLMNLPGVGPKT-ADVVLLNLGKPVFP 151
Query: 199 VDTHVFEISKAIG 211
VDTH+ IS +G
Sbjct: 152 VDTHIMRISHRLG 164
>gi|383318935|ref|YP_005379776.1| EndoIII-related endonuclease [Methanocella conradii HZ254]
gi|379320305|gb|AFC99257.1| putative EndoIII-related endonuclease [Methanocella conradii HZ254]
Length = 291
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWE-HVLA-AEQKCIENAIRCGGLAPTKAACIK 143
L+ T+L+QN T ++ + F L+ + + H +A A+++ +E IR G P KA+ +
Sbjct: 98 LMITILTQNKTADSARRTFHRLQRRYKGIDVHKMACADKRELEELIRFSG--PYKASYMI 155
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ + E G LE++R DE + L G+GPKT CVL+F L PVDTH+
Sbjct: 156 ECSRQIEERWGG-SLEWMRRAPTDEARRALLSLHGVGPKTADCVLLFSLGHSVVPVDTHI 214
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKF 236
+S+ +G + D + + + + LK
Sbjct: 215 CRVSQRLGLSMSMGDSEAAKRRVKEDLERGLKM 247
>gi|448726638|ref|ZP_21709032.1| HhH-GPD family protein [Halococcus morrhuae DSM 1307]
gi|445793968|gb|EMA44532.1| HhH-GPD family protein [Halococcus morrhuae DSM 1307]
Length = 267
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTF----PTWEHVLAAEQKCIENAIRCGGLAPTKAAC 141
LV+T+LSQNT++ S A +L + + + AEQ + I GL K+
Sbjct: 57 LVRTILSQNTSDKASQPAHDALMERYGERADLAKALADAEQSTLAETIEPAGLYNQKSET 116
Query: 142 IKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FP 198
+ I + +++ G E++ ++ L F G+GPKT CVL+F + FP
Sbjct: 117 MIAIAERVVDEYGSAAAFDEFVTDEEPATVRETLLDFSGVGPKTADCVLLFSGGRAGVFP 176
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
VDTHV I + +G P AD K L ++P E
Sbjct: 177 VDTHVHRIYRRLGIAPADADHEKVREVLEAQVPAE 211
>gi|115446223|ref|NP_001046891.1| Os02g0496500 [Oryza sativa Japonica Group]
gi|48716417|dbj|BAD23025.1| transcriptional activator-like [Oryza sativa Japonica Group]
gi|48716542|dbj|BAD23146.1| transcriptional activator-like [Oryza sativa Japonica Group]
gi|113536422|dbj|BAF08805.1| Os02g0496500 [Oryza sativa Japonica Group]
Length = 1207
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 100/236 (42%), Gaps = 43/236 (18%)
Query: 51 YRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLK-- 108
+ N RL+ NM +DK+ P+ + L + T ++T+ + L+ A K
Sbjct: 639 WDNARLE-NMVKDKSGTPVCSHR--------TLRKFMDTFEEKDTSHWDKLREEAYSKGY 689
Query: 109 -------STFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYL 161
S WE VL A I N+I G A I+ LK + + G L++L
Sbjct: 690 KIKGTGISDSADWEAVLHAPAVEIANSIAVRGQHYVIALRIQAFLKRVKKDHGNFDLDWL 749
Query: 162 RGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWV-----PTA 216
R + + K L G+G K+V C+ + L+ FPVD +V I +GWV P +
Sbjct: 750 RYVPRESAKNYLISILGLGDKSVDCIRLLSLKHKGFPVDVNVARIVTRLGWVKLQPLPFS 809
Query: 217 ADRNKTYLHLNQR------------IPKELKFDLNCLLYTHGKL--------CRNC 252
A+ + L+ R I KE ++L+CL+ T GK CR C
Sbjct: 810 AEFHLVGLYPIMRDVQKYLWPRLCTISKEKLYELHCLMITFGKAICTKVSPNCRAC 865
>gi|167645377|ref|YP_001683040.1| HhH-GPD family protein [Caulobacter sp. K31]
gi|167347807|gb|ABZ70542.1| HhH-GPD family protein [Caulobacter sp. K31]
Length = 242
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LVK+ +S T +A S + LK F TWE + +++ I+ KA + +
Sbjct: 38 LVKSSISGRTKDAVSWAVYQRLKERFATWEDLAETPAAEVQDLIKDVTFPEEKARHLPHA 97
Query: 146 LKCL-LESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHV 203
L+ + + S KL L++L L +D + L G+G K A VL F L VDTHV
Sbjct: 98 LRLIQVRSGWKLSLDHLAELELDSARWWLQGLPGVGVKVAASVLNFSPLNMRALVVDTHV 157
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHGKL 248
++ +G VP + D Y L +P ++L+ L+ G+L
Sbjct: 158 HRVASRMGLVPASYDTAHAYRALMDLVPDSWTAEDLYELHWLMKGLGQL 206
>gi|398829286|ref|ZP_10587486.1| putative endoIII-related endonuclease [Phyllobacterium sp. YR531]
gi|398218144|gb|EJN04661.1| putative endoIII-related endonuclease [Phyllobacterium sp. YR531]
Length = 232
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAP 136
G + + LV +L T + SL+AF +L++ F +WE V A + I + I +
Sbjct: 30 GPRFTPVSMLVMAMLGSRTYDNVSLQAFQNLRAAFGSWEAVANASPERINDCIYKITFSQ 89
Query: 137 TKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQD 195
T I L +++ G L L+ L G+++++ L + RG+GPK ACVL F L
Sbjct: 90 TYCVFIPEALSTIIKRYGSLNLDTLSGMTVEQALHFLQQLRGVGPKISACVLNFSTLHMR 149
Query: 196 DFPVDTHVFEIS 207
VDTH +
Sbjct: 150 ALVVDTHYLRFA 161
>gi|73668473|ref|YP_304488.1| endonuclease III [Methanosarcina barkeri str. Fusaro]
gi|72395635|gb|AAZ69908.1| endonuclease III [Methanosarcina barkeri str. Fusaro]
Length = 204
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 89/200 (44%), Gaps = 16/200 (8%)
Query: 74 YDEGEEESVLD---GLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIR 130
Y E + D L+ TV+S T + + A + L F T E ++ A+ IE I+
Sbjct: 14 YPEASNDGFTDPFFALISTVMSHRTRDDVTYPAASKLFERFSTPEEMVRADVSEIETLIK 73
Query: 131 CGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF 190
G KA IK I + LLE G G D+++A L G+G KT CVL
Sbjct: 74 DVGFYRVKAGRIKEISRLLLEKYG--------GRVPDDMEA-LLELPGVGRKTANCVLAH 124
Query: 191 HLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCR 250
+D VDTHV IS +G V T +T L + P++ +N LL KL +
Sbjct: 125 AFLKDALAVDTHVHRISNRLGLVETKVP-EETETELKKIFPQKYWRHVNLLLV---KLGQ 180
Query: 251 NCIKKGGNRQRKESAGNLCP 270
N + R + + ++CP
Sbjct: 181 NTCRPISPRCKTCTLDDICP 200
>gi|448737131|ref|ZP_21719183.1| HhH-GPD family protein [Halococcus thailandensis JCM 13552]
gi|445804344|gb|EMA54601.1| HhH-GPD family protein [Halococcus thailandensis JCM 13552]
Length = 267
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTF----PTWEHVLAAEQKCIENAIRCGGLAPTKAAC 141
LV+T+LSQNT++ S A +L + + + + AEQ + I GL K+
Sbjct: 57 LVRTILSQNTSDKASQPAHDALMARYGEGADLAKALADAEQSTLAETIESAGLYNQKSET 116
Query: 142 IKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FP 198
+ I + +++ G E++ ++ L F G+GPKT CVL+F + FP
Sbjct: 117 MIAIAERVVDEYGSAAAFDEFVTEEEPATVRETLLDFSGVGPKTADCVLLFSGGRAGVFP 176
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
VDTHV I + +G P AD L ++P E
Sbjct: 177 VDTHVHRIYRRLGIAPADADHEDVREVLEAQVPAE 211
>gi|167043370|gb|ABZ08073.1| putative HhH-GPD superfamily base excision DNA repair protein
[uncultured marine crenarchaeote HF4000_ANIW141O9]
Length = 217
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 13/177 (7%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
+ E S L+ TVLS T + N+ KA L + T + + A+ K +E I+ G
Sbjct: 28 QAETASPFKILIGTVLSARTRDENTTKAVKGLFKVYNTPQKLANAKAKDVEKIIKSVGFY 87
Query: 136 PTKAACIKNILKCLL-ESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ 194
K+ I + +L + GK+ + ID+ L G+G KT CVL++ ++
Sbjct: 88 HVKSRRIIEVANIILTKYHGKVPAD------IDK----LVEIPGVGRKTANCVLVYAFEK 137
Query: 195 DDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
PVDTHV IS +G V T +T + L +++PK+ +N +G+ +C+
Sbjct: 138 PAIPVDTHVHRISNRLGLVDTKTPE-ETEMELRKKVPKKYWLPINNTFVMYGQNICK 193
>gi|406909226|gb|EKD49522.1| hypothetical protein ACD_63C00115G0009 [uncultured bacterium]
Length = 220
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T++SQ + + K +P + A+ + ++ G K+ IK++
Sbjct: 35 LIATIVSQRVKDETTEKISRIFFEKYPDVRSLARADLNSLRKILKPAGFFRQKSKHIKSV 94
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LL+ K R L EL + G+G KT CVL++ + PVDTHV
Sbjct: 95 AETLLK---KYNGNVPRNL------PELVKLPGVGRKTANCVLVYAYKLPAIPVDTHVHR 145
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKG 256
IS IG V T A +T L + +PK D+N LL HGK + C+ +G
Sbjct: 146 ISNRIGLVRTKAP-EETEFALMKTVPKRYWIDMNRLLVLHGK--KTCLPRG 193
>gi|448346319|ref|ZP_21535205.1| HhH-GPD family protein [Natrinema altunense JCM 12890]
gi|445632908|gb|ELY86114.1| HhH-GPD family protein [Natrinema altunense JCM 12890]
Length = 310
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 23/205 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPT-----WEHVLAAEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + E + +AEQ + I GL K+
Sbjct: 92 LVRTILSQNTSDKASQPAHDALLDRYGGPDVDLAESLASAEQSTLAETISGAGLYNQKSE 151
Query: 141 CIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
+ + + +LE G +++ ++ L RG+GPKT CVL+F + F
Sbjct: 152 TLIDTAEWVLEEFGSAPAFDAFVKDEGPSIVRETLLSVRGVGPKTADCVLLFAGGRGGVF 211
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-KELKFDLNCLLYTHGKLCR----NC 252
PVDTHV I + +G P AD L + +P + F + + CR C
Sbjct: 212 PVDTHVHRIYRRMGIAPPDADHEAVREVLERDVPAAKCGFGHTATIQFGREYCRARKPAC 271
Query: 253 IKKGGNRQRKESAGNLCPLLNYCEK 277
++ + CP+ + CE+
Sbjct: 272 LED----------PDACPMADVCEQ 286
>gi|300361703|ref|ZP_07057880.1| deoxyribonuclease (pyrimidine dimer) [Lactobacillus gasseri JV-V03]
gi|300354322|gb|EFJ70193.1| deoxyribonuclease (pyrimidine dimer) [Lactobacillus gasseri JV-V03]
Length = 216
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 69 LDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTW-EHVLAAEQKCIEN 127
LD N + G + + + T+L QNT N KA A+L W E++L +E
Sbjct: 17 LDPNGWWPGRSDWQV--IWSTILIQNTNWKNVDKALATLYQATNFWPENILKTPDDKLER 74
Query: 128 AIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACV 187
AI G KAA +K + K L+ R LS D++++EL +GIGP+T +
Sbjct: 75 AIASAGFYTRKAATLKRLATYF--QKYDFDLDKCRQLSKDQLRSELLSIKGIGPETADVI 132
Query: 188 LMFHLQQDDFPVDTH 202
LM+ +Q+ +F VD +
Sbjct: 133 LMYGIQKGEFVVDKY 147
>gi|386002355|ref|YP_005920654.1| hypothetical protein Mhar_1672 [Methanosaeta harundinacea 6Ac]
gi|357210411|gb|AET65031.1| hypothetical protein Mhar_1672 [Methanosaeta harundinacea 6Ac]
Length = 133
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 155 KLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVP 214
++ LE+LRG +E + L G+GPKT A VL+F + PVDTHV +S+ +G+VP
Sbjct: 12 RIDLEFLRGADAEEARQFLVSLPGVGPKTAAVVLLFAFRMPLLPVDTHVNRLSRRLGFVP 71
Query: 215 TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
A + L + P+E + L HG+ +CR
Sbjct: 72 AGASIEEAERILEEITPREKYCSFHVNLIRHGRAVCR 108
>gi|330370551|gb|AEC12445.1| DNA N-glycosylase/DNA-(apurinic or apyrimidinic site) lyase
[Gossypium hirsutum]
Length = 2055
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 97 EANSLKAFASLKSTFPT--WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKG 154
+AN LK S K T + +E + A I N I+ G+ A IK+ L L+
Sbjct: 1554 QANGLKKERS-KDTMDSLDYEAMRNANVNEISNTIKERGMNNMLAERIKDFLNRLVRDHE 1612
Query: 155 KLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVP 214
+ LE+LR + D+ K L RG+G K+V CV + L FPVDT+V I+ +GWVP
Sbjct: 1613 SIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 1672
Query: 215 TAADRNKTYLHLNQRIP 231
LHL + P
Sbjct: 1673 LQPPPESLQLHLLELYP 1689
>gi|448362246|ref|ZP_21550857.1| HhH-GPD family protein [Natrialba asiatica DSM 12278]
gi|445648767|gb|ELZ01715.1| HhH-GPD family protein [Natrialba asiatica DSM 12278]
Length = 293
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 22/161 (13%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE-----QKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + + LAAE Q + I GL K+
Sbjct: 81 LVRTILSQNTSDKASQPAHDALIDRYGGSDVDLAAELGAAEQTQLAETISSAGLYNQKS- 139
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSID---------EIKAELSRFRGIGPKTVACVLMFH 191
+ ++ + ++C E+ + D E++ L RG+GPKT CVL+F
Sbjct: 140 ------EVIIGAAERVCDEFGSAAAFDAFVTDEAPGEVRETLLDVRGVGPKTADCVLLFA 193
Query: 192 LQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
+ FPVDTHV I + +G P AD L +P
Sbjct: 194 GGRSGVFPVDTHVHRIYRRLGIAPPDADHEDVREVLEDEVP 234
>gi|51892440|ref|YP_075131.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
gi|51856129|dbj|BAD40287.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
Length = 232
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%)
Query: 84 DGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
D L +LS+ T + + + L++T W+ +L Q + + GL +A +
Sbjct: 27 DCLFYLMLSRKTPIRTAARVYKRLRATVRGWDGLLGLTQVELVRLLWGSGLEEIRAGHLL 86
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ L + G + LE LR DE A L G+G KT CV+++ L + FP D H
Sbjct: 87 AVAGLLRDRFGAVTLEPLRQWPDDECLAFLMSLPGMGMKTALCVMLYGLDRPVFPADAHC 146
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ K +G + L + +P L + L+ L HG+
Sbjct: 147 IRVLKRMGVIDARLAHRPAQRELARIVPGHLGYVLHVNLVAHGQ 190
>gi|145334291|ref|NP_001078527.1| transcriptional activator DEMETER [Arabidopsis thaliana]
gi|108935833|sp|Q8LK56.2|DME_ARATH RecName: Full=Transcriptional activator DEMETER; AltName: Full=DNA
glycosylase-related protein DME
gi|84782664|gb|ABC61677.1| DNA glycosylase DEMETER [Arabidopsis thaliana]
gi|332003378|gb|AED90761.1| transcriptional activator DEMETER [Arabidopsis thaliana]
Length = 1987
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E + A I AI+ G+ A IK+ L+ +++ G + LE+LR D+ K L
Sbjct: 1476 YEAIRRASISEISEAIKERGMNNMLAVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYL 1535
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1536 LSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYP 1593
>gi|449456184|ref|XP_004145830.1| PREDICTED: uncharacterized protein LOC101216331 [Cucumis sativus]
Length = 1810
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 57/118 (48%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V AE I +AI+ G A IK L G + LE+LR ++K L
Sbjct: 1295 WEAVRFAEPTKIADAIKERGQHNIIAGRIKQFLDRTARLHGCIDLEWLRHAPPKDVKEYL 1354
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
G+G K+V C+ + LQQ FPVD +V I+ +GWVP + +HL + P
Sbjct: 1355 LEIDGLGLKSVECIRLLALQQVAFPVDINVGRIAVRLGWVPLEPLPEEVQMHLLETFP 1412
>gi|30680560|ref|NP_196076.2| transcriptional activator DEMETER [Arabidopsis thaliana]
gi|332003377|gb|AED90760.1| transcriptional activator DEMETER [Arabidopsis thaliana]
Length = 1729
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E + A I AI+ G+ A IK+ L+ +++ G + LE+LR D+ K L
Sbjct: 1218 YEAIRRASISEISEAIKERGMNNMLAVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYL 1277
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1278 LSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYP 1335
>gi|21743571|gb|AAM77215.1| DEMETER protein [Arabidopsis thaliana]
Length = 1729
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E + A I AI+ G+ A IK+ L+ +++ G + LE+LR D+ K L
Sbjct: 1218 YEAIRRASISEISEAIKERGMNNMLAVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYL 1277
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1278 LSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYP 1335
>gi|448728587|ref|ZP_21710911.1| endonuclease III [Halococcus saccharolyticus DSM 5350]
gi|445796772|gb|EMA47269.1| endonuclease III [Halococcus saccharolyticus DSM 5350]
Length = 272
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPT-WEHVLAA-----EQKCIENAIRCGGLAPTKA 139
LV+T+LSQNT++ S A L + + LAA +Q + I+ GL K+
Sbjct: 58 LVRTILSQNTSDKASQPAHDDLMDRYGDRVDGDLAAALANDDQPTLAETIQSAGLYNQKS 117
Query: 140 ACIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD- 196
A + I + +++ G ++ + ++ L F G+GPKT CVL+F ++
Sbjct: 118 ATMIAIAERVVDEYGSAAEFDAFVTEKDPETVRDALLDFSGVGPKTADCVLLFSGGREGV 177
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
FPVDTHV I + +G P+ AD + + ++P
Sbjct: 178 FPVDTHVHRIYRRLGIAPSDADHEEVRTVVEDQVP 212
>gi|42557689|emb|CAF28664.1| putative endonuclease III [uncultured crenarchaeote]
Length = 219
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 19/181 (10%)
Query: 70 DMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
++ + ++G+ +L G T+LS T + N+ + L F + + AE K I ++I
Sbjct: 29 NLQKQEQGDPFKILIG---TILSARTRDENTTRVLKYLFDKFRDIDGISKAELKDIRDSI 85
Query: 130 RCGGLAPTKAACIKNILKCLLE---SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVAC 186
G KA IK +++ L+E SK LE EL G+G KT C
Sbjct: 86 HSIGFYNIKAKRIKQVVQLLIEKFDSKVPSNLE------------ELLTLPGVGRKTANC 133
Query: 187 VLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG 246
VL++ Q PVD HV IS +G V T +T L L I KE+ ++N T+G
Sbjct: 134 VLVYAFNQPAIPVDVHVHRISNRLGIVNTRK-VEETELELCNIIDKEMWIEVNDTFVTYG 192
Query: 247 K 247
+
Sbjct: 193 Q 193
>gi|150020336|ref|YP_001305690.1| endonuclease III [Thermosipho melanesiensis BI429]
gi|149792857|gb|ABR30305.1| endonuclease III [Thermosipho melanesiensis BI429]
Length = 203
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 25/206 (12%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPT 137
+E+ L+ TVLSQ + + N+ A L +PT + +L A+++ + I+ GL
Sbjct: 19 KEKDPFKVLITTVLSQRSKDENTEIAANRLFEKYPTPQTLLKAKEEDLYELIKPAGLYRQ 78
Query: 138 KAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDF 197
KA I I K+ + G D ++ EL G+G KT VL +
Sbjct: 79 KAKRIIEI--------SKIIVNKFSGKVPDTLE-ELLTLPGVGRKTANIVLYVSFSKPAL 129
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK---LCRNCIK 254
VDTHV IS +GW T + N+T L + +PK+L +N + GK L RN
Sbjct: 130 AVDTHVHRISNRLGWCKT-KNPNETEFALMKLLPKDLWGPINGSMVKFGKNVCLPRN--- 185
Query: 255 KGGNRQRKESAGNLCPLLNYCEKSNK 280
++CP+ +YC+ K
Sbjct: 186 ---------PKCDICPIYDYCKWEGK 202
>gi|325968210|ref|YP_004244402.1| DNA-(apurinic or apyrimidinic site) lyase [Vulcanisaeta moutnovskia
768-28]
gi|323707413|gb|ADY00900.1| DNA-(apurinic or apyrimidinic site) lyase [Vulcanisaeta moutnovskia
768-28]
Length = 231
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAPTK 138
+ LV T+L+QNT + N+L+A+ +L T E ++ + + NAI+ G+ +
Sbjct: 33 DIFKALVVTILTQNTNDKNALRAYENLVRIIGDITPEKLVNIGEDALANAIKPAGMHRIR 92
Query: 139 AACIKNILKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDF 197
A I + + +LE+ +G L +++ L +DE + L G+G KT A V++ +L + F
Sbjct: 93 ARKIIELSRVILENYRGDLT--WIKDLPLDEARKALLELPGVGEKT-ADVILVNLGKLAF 149
Query: 198 PVDTHVFEISKAIG 211
PVDTH+ IS +G
Sbjct: 150 PVDTHITRISIRLG 163
>gi|449530536|ref|XP_004172250.1| PREDICTED: transcriptional activator DEMETER-like [Cucumis sativus]
Length = 1176
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 57/118 (48%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V AE I +AI+ G A IK L G + LE+LR ++K L
Sbjct: 661 WEAVRFAEPTKIADAIKERGQHNIIAGRIKQFLDRTARLHGCIDLEWLRHAPPKDVKEYL 720
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
G+G K+V C+ + LQQ FPVD +V I+ +GWVP + +HL + P
Sbjct: 721 LEIDGLGLKSVECIRLLALQQVAFPVDINVGRIAVRLGWVPLEPLPEEVQMHLLETFP 778
>gi|389844120|ref|YP_006346200.1| endonuclease III [Mesotoga prima MesG1.Ag.4.2]
gi|387858866|gb|AFK06957.1| endonuclease III, DNA-(apurinic or apyrimidinic site) lyase
[Mesotoga prima MesG1.Ag.4.2]
Length = 220
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LSQ T + N+ +A L S +P + ++ A+ + + + I+ G+ KAA I N
Sbjct: 32 LVSTILSQRTRDENTEEASRRLFSVYPDPQSLIDAKPEDLYDLIKASGMYRQKAARIINC 91
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ ++ES G+ D ++ EL G+G KT VL +++ VDTHV
Sbjct: 92 ARMIVES--------FAGVVPDTLE-ELVTIPGVGRKTANIVLNVSFKKEALAVDTHVHR 142
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
I+ +GWV T + T L + +P + +N + G+ +CR
Sbjct: 143 IANRLGWVKTKTP-DDTEFALMKILPPSIWGPVNGSMVEFGREICR 187
>gi|45935143|gb|AAS79601.1| putative endonuclease III protein [Ipomoea trifida]
gi|118562896|dbj|BAF37786.1| hypothetical protein [Ipomoea trifida]
Length = 1687
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 15/163 (9%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W V A I I G+ A IK L L+E G + LE+L+ + ++ K L
Sbjct: 1140 WNAVRCAPVGEIAKVIENRGMNNVLAEKIKAFLDRLVEDHGSIDLEWLKDVPPEKAKEFL 1199
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
RG+G K+ CV + L FPVDT++ I +GWVP +HL
Sbjct: 1200 LSIRGVGLKSTECVRLLTLGHHAFPVDTNIARIVVRLGWVPLEPLPGDLQIHLLD----- 1254
Query: 234 LKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
++ L+ L T GK+ C KK N N CP+ C+
Sbjct: 1255 -QYVLHYQLITFGKVI--CTKKNPN-------CNACPMRAECK 1287
>gi|7406461|emb|CAB85563.1| putative protein [Arabidopsis thaliana]
Length = 555
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E + A I AI+ G+ A IK+ L+ +++ G + LE+LR D+ K L
Sbjct: 440 YEAIRRASISEISEAIKERGMNNMLAVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYL 499
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHL 226
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL
Sbjct: 500 LSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHL 552
>gi|452208019|ref|YP_007488141.1| endonuclease III [Natronomonas moolapensis 8.8.11]
gi|452084119|emb|CCQ37452.1| endonuclease III [Natronomonas moolapensis 8.8.11]
Length = 271
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 21/203 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKC---IENAIRCGGLAPTKAACI 142
LV+T+LSQNTT+ S A +L + + + I GL K+ I
Sbjct: 56 LVRTILSQNTTDVASQPAHDALMERYGGGDLAANLADAARPELAETISSAGLYNQKSKRI 115
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+I + +L G ++R E++ L G+GPKT CVL+F + FPV
Sbjct: 116 IDIAERVLAEYGDTAGFDRFVREEPPSEVRETLLEMNGVGPKTADCVLLFAGGRGGVFPV 175
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE-LKFDLNCLLYTHGKLCR----NCIK 254
DTHV I++ +G P AD L +P+E F ++ + C C++
Sbjct: 176 DTHVHRIARRLGIAPADADHEAVRDALETAVPEEKCGFGHTAMIQFGREYCTARTPACLE 235
Query: 255 KGGNRQRKESAGNLCPLLNYCEK 277
+ CP+ + CE+
Sbjct: 236 D----------PDACPMADVCEQ 248
>gi|239618511|ref|YP_002941833.1| endonuclease III [Kosmotoga olearia TBF 19.5.1]
gi|239507342|gb|ACR80829.1| endonuclease III [Kosmotoga olearia TBF 19.5.1]
Length = 210
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 16/185 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV TVLSQ T + N+ A L S +P + A+ + + N I+ G+ KA I I
Sbjct: 30 LVSTVLSQRTRDENTEVASKKLFSVYPDVFAIAKAKPEDLYNLIKAAGMYRQKAERIVEI 89
Query: 146 LKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
K ++E+ GK + + EL++ G+G KT VL + VDTHV
Sbjct: 90 SKIIVETYNGK----------VPDTLEELTKLPGVGRKTANIVLNVSFGKAALAVDTHVH 139
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKES 264
IS +GW+ T + L + +P+EL LN + G+ R C K N Q E
Sbjct: 140 RISNRLGWIKTKQPEQSEF-ELQKILPEELWGPLNGSMVEFGR--RVC--KPVNPQCNEC 194
Query: 265 AGNLC 269
N C
Sbjct: 195 PINSC 199
>gi|218883640|ref|YP_002428022.1| Endonuclease III [Desulfurococcus kamchatkensis 1221n]
gi|218765256|gb|ACL10655.1| Endonuclease III [Desulfurococcus kamchatkensis 1221n]
Length = 238
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 19/211 (9%)
Query: 60 MTRDKNSVPLDMNEYDEGE----EESVLDGLVKTVLSQNTTEANSLKAFASLK---STFP 112
+ R + LD +E+ E + + + +LSQNT++ N+ +A L+
Sbjct: 14 LNRLRKEYKLDADEFVVSERCIQSNRLFEIITAVILSQNTSDRNACRALQKLRELTGGVI 73
Query: 113 TWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLES--KGKLCLEYLRGLSIDEIK 170
T E VL +E+A+R G+ ++ I+ + + + +L E R S++E +
Sbjct: 74 TPETVLLLPVDKLEDALRPAGMYRNRSRVIRELASVFNQGGFQERLISEVSRS-SVEEAR 132
Query: 171 AELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRI 230
L G+G KT VL+ + ++ FPVDTH+ I+ +G+ + + ++ + ++
Sbjct: 133 RLLMELPGVGWKTADVVLLRYFRKPVFPVDTHITRITMRMGFTGSRSYKHISRFWMDNTS 192
Query: 231 PKELKFDLNCLLYTHGK--------LCRNCI 253
P DL+ L THG+ LC C+
Sbjct: 193 PGNY-LDLHLYLITHGRRTCRARKPLCNKCV 222
>gi|448337176|ref|ZP_21526258.1| HhH-GPD family protein [Natrinema pallidum DSM 3751]
gi|445626522|gb|ELY79865.1| HhH-GPD family protein [Natrinema pallidum DSM 3751]
Length = 284
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 23/205 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTF-----PTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + E + +AE+ + I GL K+
Sbjct: 66 LVRTILSQNTSDKASQPAHDALLDRYGGPDVDLAESLASAERATLAETISGAGLYNQKSE 125
Query: 141 CIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
+ + + +LE G +++ ++ L RG+GPKT CVL+F + F
Sbjct: 126 TLIDTAEWVLEEFGSASAFDTFVKDEEPSVVRETLLSVRGVGPKTADCVLLFAGGRGGVF 185
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-KELKFDLNCLLYTHGKLCR----NC 252
PVDTHV I + +G P AD L + +P + F + + CR C
Sbjct: 186 PVDTHVHRIYRRMGIAPPDADHEAVREVLERDVPAAKCGFGHTATIQFGREYCRARKPAC 245
Query: 253 IKKGGNRQRKESAGNLCPLLNYCEK 277
++ + CP+ + CE+
Sbjct: 246 LED----------PDACPMADVCEQ 260
>gi|448716619|ref|ZP_21702549.1| HhH-GPD family protein [Halobiforma nitratireducens JCM 10879]
gi|445786833|gb|EMA37595.1| HhH-GPD family protein [Halobiforma nitratireducens JCM 10879]
Length = 321
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTF-PTWEHVLAA-------EQKCIENAIRCGGLAPT 137
LV+TVLSQNT++ S A +L + P+ + EQ + I GL
Sbjct: 57 LVRTVLSQNTSDKASQPAHDALLERYEPSADSDADLATALADAEQSTLAETISGAGLYNQ 116
Query: 138 KAACIKNILKCLLESKGKLCLEYLRGLSIDE----IKAELSRFRGIGPKTVACVLMFHLQ 193
K+ + ++ + +LE+ G E DE ++ L G+GPKT CVL+F
Sbjct: 117 KSEVLIDVAEWVLETFGSA--EAFDAFVTDEEPDTVRKTLLEVSGVGPKTADCVLLFAGG 174
Query: 194 QDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
+ FPVDTHV I + +G P AD L + +P
Sbjct: 175 RPGVFPVDTHVHRIYRRLGVAPPEADHEAVRAVLEEAVP 213
>gi|116629638|ref|YP_814810.1| endonuclease III-like protein [Lactobacillus gasseri ATCC 33323]
gi|238854277|ref|ZP_04644621.1| base excision DNA repair protein, HhH-GPD family [Lactobacillus
gasseri 202-4]
gi|282851157|ref|ZP_06260524.1| base excision DNA repair protein, HhH-GPD family [Lactobacillus
gasseri 224-1]
gi|311110719|ref|ZP_07712116.1| putative endonuclease III [Lactobacillus gasseri MV-22]
gi|420147217|ref|ZP_14654493.1| Base excision DNA repair protein, HhH-GPD family [Lactobacillus
gasseri CECT 5714]
gi|116095220|gb|ABJ60372.1| DNA-3-methyladenine glycosylase III [Lactobacillus gasseri ATCC
33323]
gi|238833088|gb|EEQ25381.1| base excision DNA repair protein, HhH-GPD family [Lactobacillus
gasseri 202-4]
gi|282557689|gb|EFB63284.1| base excision DNA repair protein, HhH-GPD family [Lactobacillus
gasseri 224-1]
gi|311065873|gb|EFQ46213.1| putative endonuclease III [Lactobacillus gasseri MV-22]
gi|398401218|gb|EJN54720.1| Base excision DNA repair protein, HhH-GPD family [Lactobacillus
gasseri CECT 5714]
Length = 216
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 69 LDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTW-EHVLAAEQKCIEN 127
LD N + G + + + T+L QNT N KA A+L W E++L +E
Sbjct: 17 LDPNGWWPGRSDWHV--IWSTILIQNTNWKNVDKALATLYQATNFWPENILNLSDNKLEK 74
Query: 128 AIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACV 187
AI G KAA +K + K + L+ R LS ++++ EL +GIGP+T +
Sbjct: 75 AIASAGFFTRKAATLKRLATYF--QKYEFDLDRCRQLSKEQLRPELLSIKGIGPETADVI 132
Query: 188 LMFHLQQDDFPVDTH 202
LM+ +Q+ +F VDT+
Sbjct: 133 LMYGIQKGEFVVDTY 147
>gi|312143859|ref|YP_003995305.1| endonuclease III [Halanaerobium hydrogeniformans]
gi|311904510|gb|ADQ14951.1| endonuclease III [Halanaerobium hydrogeniformans]
Length = 216
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 77/176 (43%), Gaps = 18/176 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS TT+ K A L + T E A +K +E I GL KA I
Sbjct: 37 LIATILSAQTTDVQVNKVTAELFKEYNTPEDFAALSKKELEKKINSIGLYRNKAKYIIKT 96
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE EY + + EL + G+G KT VL + FPVDTHVF
Sbjct: 97 SQILLE-------EY--DGEVPHKRKELLKLAGVGRKTANVVLANAFDKAAFPVDTHVFR 147
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL--------CRNCI 253
+S + + +A + T L + IPK+ DL+ L HG+ C NC
Sbjct: 148 VSSRLA-LSSAKNPEVTEKELTELIPKKYWIDLHHWLIDHGRAICKAQNPDCDNCF 202
>gi|448626650|ref|ZP_21671429.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
gi|445760262|gb|EMA11526.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
Length = 277
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPT--------------WEHVLAAEQKCIENAIRC 131
LV+TVLSQNTT+ S A L + + + + A+Q + I
Sbjct: 57 LVRTVLSQNTTDKVSQPAHDELMARYGSDGGPASGGDTDADLARALADADQPELAETISS 116
Query: 132 GGLAPTKAACIKNILKCLLESKG--KLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
GL K+ I + + + E G E++R DE+++ L G+GPKT CVL+
Sbjct: 117 AGLYNQKSKRIITLAQRICEEYGGEDGFDEFVREGDPDEVRSTLLDMNGVGPKTADCVLL 176
Query: 190 FHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
F + FPVDTHV I++ +G P AD +L + +P
Sbjct: 177 FAGGRGGVFPVDTHVHRITRRMGLAPAEADHETVREYLERDVP 219
>gi|451981964|ref|ZP_21930300.1| Endonuclease III [Nitrospina gracilis 3/211]
gi|451760805|emb|CCQ91576.1| Endonuclease III [Nitrospina gracilis 3/211]
Length = 220
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 91/206 (44%), Gaps = 19/206 (9%)
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGL 134
E E E+ LV +LS T+ + A A+L +PT +L A +K + IR GL
Sbjct: 22 SELEYETRFQLLVAVILSAQATDVSVNAATATLFPQYPTPSAMLKAGEKGLLKHIRRIGL 81
Query: 135 APTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ 194
APTKA KNILK K+ LE G + E + L G+G KT VL
Sbjct: 82 APTKA---KNILKTC-----KILLEKFDG-EVPENREALESLPGVGRKTANVVLNEGFGH 132
Query: 195 DDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIK 254
VDTHVF +S G P+ + + L + +PK+ K + + L G+ C
Sbjct: 133 PTIAVDTHVFRLSNRTGLAPS-KNTVEAETRLLEIVPKKWKPNAHRYLIMQGRYV--CKA 189
Query: 255 KGGNRQRKESAGNLCPLLNYCEKSNK 280
K N C ++ CE S+K
Sbjct: 190 KNYNCSH-------CVIVQECEFSDK 208
>gi|313127078|ref|YP_004037348.1| endoiii-related endonuclease [Halogeometricum borinquense DSM
11551]
gi|448288454|ref|ZP_21479653.1| endoiii-related endonuclease [Halogeometricum borinquense DSM
11551]
gi|312293443|gb|ADQ67903.1| predicted endoIII-related endonuclease [Halogeometricum borinquense
DSM 11551]
gi|445569605|gb|ELY24177.1| endoiii-related endonuclease [Halogeometricum borinquense DSM
11551]
Length = 277
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 88/211 (41%), Gaps = 25/211 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAA---------------EQKCIENAIR 130
LV+T+LSQNT++ S A SL + + A EQ + I
Sbjct: 56 LVRTILSQNTSDVASQPAHDSLMDRYAGGDGDSADGDSADGDLAAALADAEQSELAETIA 115
Query: 131 CGGLAPTKAACIKNILKCLLESKGKL--CLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
GL K+ I + + ES G E+++ D ++ L G+GPKT CVL
Sbjct: 116 SAGLYNQKSEMIIGAAERICESFGGADGFDEFVKDEDPDTVRKRLLDIHGVGPKTADCVL 175
Query: 189 MFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE-LKFDLNCLLYTHG 246
+F + FPVDTHV I + +G AD HL +P E F ++
Sbjct: 176 LFSGGRGGVFPVDTHVHRIGRRMGLASADADHEDVREHLEADVPAEKCGFGHTAMIQFGR 235
Query: 247 KLCRNCIKKGGNRQRKESAGNLCPLLNYCEK 277
+ C+ +K E+ CPL + C++
Sbjct: 236 EYCK--ARKPACLDGPEA----CPLYDLCDR 260
>gi|168050578|ref|XP_001777735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670836|gb|EDQ57397.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1992
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAP 136
E ++ + L VLS N + S+ S WE V A+ + + I+ G+
Sbjct: 1360 AEMKTTWEALRAKVLSDNFEKDYSI-------SDSVDWEAVRLADVAVVADLIKERGMNN 1412
Query: 137 TKAACIKNIL-KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
+ IK++L + + G L LE++R LS + + L RG+G K+V C+ + L
Sbjct: 1413 ILSGRIKSLLDRIYRDQDGSLDLEWIRKLSPIDSQNFLINVRGLGIKSVECIRLLTLHHP 1472
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHL 226
FPVDT+V I +GWVP K LHL
Sbjct: 1473 SFPVDTNVGRILVRLGWVPLEPLPEKIRLHL 1503
>gi|448684914|ref|ZP_21693001.1| endonuclease III [Haloarcula japonica DSM 6131]
gi|445782845|gb|EMA33686.1| endonuclease III [Haloarcula japonica DSM 6131]
Length = 277
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 17/165 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEH--------------VLAAEQKCIENAIRC 131
LV+T+LSQNT++ S A L + E + A+Q + I
Sbjct: 57 LVRTILSQNTSDKASQPAHDELMRRYGGDEEANSEGDTDSDLARALADADQPELAETISS 116
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
GL K+ I + + + E G E++R + +++ L G+GPKT CVL+
Sbjct: 117 AGLYNQKSERIIALAQRICEEYGGESGFDEFVREEDPEAVRSTLLDMNGVGPKTADCVLL 176
Query: 190 FHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
F + FPVDTHV I++ +G P AD +L + +P E
Sbjct: 177 FAGGRGGVFPVDTHVHRIARRMGLAPADADHETVREYLERDVPAE 221
>gi|357495073|ref|XP_003617825.1| DNA glycosylase [Medicago truncatula]
gi|355519160|gb|AET00784.1| DNA glycosylase [Medicago truncatula]
Length = 1004
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A + AI+ G A I+ LK + + G + LE+L+ + +E K
Sbjct: 476 WEAVRDANVNEVAAAIKKRGQQNIIAYKIQVALKGFMVNHGSMNLEWLKDIPPNEAKEYF 535
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
G+G K+V C+ + LQ FPVD +V I +GWVP +H ++ P
Sbjct: 536 LSIFGLGLKSVECLRLLTLQHISFPVDVNVGRIVVRLGWVPLQPLPESIQIHNLEKFPDP 595
Query: 234 LK-----------------FDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
+K ++L+ L T GK+ C K+ N N CP+ + C+
Sbjct: 596 IKIQQYLWPRLCKLDHQTLYELHYQLITFGKVF--CTKRNPN-------CNACPMKDGCK 646
>gi|330834042|ref|YP_004408770.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera cuprina
Ar-4]
gi|329566181|gb|AEB94286.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera cuprina
Ar-4]
Length = 224
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 19/170 (11%)
Query: 85 GLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA-AEQKCIENAIRCGGLAPTKAACIK 143
LV T+L+QNT++ ++ KAF L+S L+ A+ + I+ I+ GL K+ I+
Sbjct: 39 SLVATILTQNTSDKSAKKAFDLLESKVGVTPSNLSNADLEVIKFCIKSIGLYNNKSITIR 98
Query: 144 NILKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ + + E+ G + L + + + EL+R +GIG KTV VL+ FPVDTH
Sbjct: 99 ELARFIQETYHGDI--NKLLDVDPELARKELTRIKGIGNKTVDVVLLTCKGYKTFPVDTH 156
Query: 203 VFEISKAIGW-----VPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+F ISK +G V + +N Y LN + +L THG+
Sbjct: 157 IFRISKRLGIKGNYKVVSEFWKNSVYDTLNAHL----------ILITHGR 196
>gi|452209864|ref|YP_007489978.1| Endonuclease III [Methanosarcina mazei Tuc01]
gi|452099766|gb|AGF96706.1| Endonuclease III [Methanosarcina mazei Tuc01]
Length = 205
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 12/168 (7%)
Query: 85 GLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
L+ TV+S T + + A L F T E ++ A+ + IE IR G KA IK
Sbjct: 28 ALISTVMSHRTRDDVTYPAAKKLFERFSTPEEMVEADVEDIEELIRDVGFYRVKAGRIKE 87
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF-HLQQDDFPVDTHV 203
I + LLE G D+++ L + G+G KT CVL L++D VDTHV
Sbjct: 88 ISRILLEDYN--------GRVPDDMET-LLKLPGVGRKTANCVLAHAFLKEDALAVDTHV 138
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS +G V T + +T + L + +P++ +N LL G+ +CR
Sbjct: 139 HRISNRLGLVVT-KNPEETEMELKKLLPQKYWRHVNILLVKFGQNVCR 185
>gi|300712085|ref|YP_003737899.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
gi|448295774|ref|ZP_21485838.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
gi|299125768|gb|ADJ16107.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
gi|445583873|gb|ELY38202.1| DNA-(apurinic or apyrimidinic site) lyase [Halalkalicoccus jeotgali
B3]
Length = 267
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA---AEQKCIENAIRCGGLAPTKAACI 142
LV+T+LSQNT++ S A SL + + V A A + + I GL K+ +
Sbjct: 58 LVRTILSQNTSDKASQPAHESLMERYGGGDLVEALAEAHRDELAETISSAGLYNQKSDVM 117
Query: 143 KNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
+ + E G ++R + +++ L G+GPKT CVL+F + FPV
Sbjct: 118 IAAAEEIREEFGSEAEFDAFVRESEPETVRSRLLEINGVGPKTADCVLLFSGGRGGVFPV 177
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
DTHV I + +G P AD L +++P E
Sbjct: 178 DTHVHRIYRRMGIAPPEADHEAVREVLEEQVPAE 211
>gi|15643134|ref|NP_228177.1| endonuclease III [Thermotoga maritima MSB8]
gi|403252815|ref|ZP_10919120.1| endonuclease III [Thermotoga sp. EMP]
gi|418046300|ref|ZP_12684394.1| endonuclease III [Thermotoga maritima MSB8]
gi|8134433|sp|Q9WYK0.1|END3_THEMA RecName: Full=Endonuclease III; AltName: Full=DNA-(apurinic or
apyrimidinic site) lyase
gi|4980869|gb|AAD35453.1|AE001716_16 endonuclease III [Thermotoga maritima MSB8]
gi|351675853|gb|EHA59013.1| endonuclease III [Thermotoga maritima MSB8]
gi|402811577|gb|EJX26061.1| endonuclease III [Thermotoga sp. EMP]
Length = 213
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLSQ T + N+ KA L + T + + A+ + + + I+ G+ KA I I
Sbjct: 26 LISTVLSQRTRDENTEKASKKLFEVYRTPQELAKAKPEDLYDLIKESGMYRQKAERIVEI 85
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G G D ++ EL + G+G KT VL ++ VDTHV
Sbjct: 86 SRILVEKYG--------GRVPDSLE-ELLKLPGVGRKTANIVLWVGFKKPALAVDTHVHR 136
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCIKK 255
IS +GWV T +T L + +P++L +N + G+ LC C K
Sbjct: 137 ISNRLGWVKTRTP-EETEEALKKLLPEDLWGPINGSMVEFGRRICKPQNPLCEECFLK 193
>gi|448637456|ref|ZP_21675694.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
gi|445764303|gb|EMA15458.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
Length = 278
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEH---------------VLAAEQKCIENAIR 130
LV+T+LSQNT++ S A L + + E + A+Q + I
Sbjct: 57 LVRTILSQNTSDKASQPAHDDLMARYGGGEDTNSEGNINSTDLARALADADQPELAETIS 116
Query: 131 CGGLAPTKAACIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
GL K+ I + + + E G ++R +++++ L G+GPKT CVL
Sbjct: 117 SAGLYNQKSERIIALAQRICEEYGGEAGFDAFVRDSDSEKVRSTLLDMNGVGPKTADCVL 176
Query: 189 MFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
+F + FPVDTHV I++ +G P AD +L + +P
Sbjct: 177 LFAGGRGGVFPVDTHVHRIARRMGLAPADADHETVRAYLERDVP 220
>gi|357445859|ref|XP_003593207.1| Repressor of silencing [Medicago truncatula]
gi|355482255|gb|AES63458.1| Repressor of silencing [Medicago truncatula]
Length = 731
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A+ + AI+ G A I+ L LE G LE+L+ + +E K L
Sbjct: 510 WEAVRNAKVGEVAEAIKMRGQHNIIAKKIQLALNKFLEHHGTTDLEWLKYIPPNEAKEYL 569
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
G+G K+V C+ + LQ FPVD +V I +GWVP +H ++ P
Sbjct: 570 LNIFGLGLKSVECLRLLTLQHISFPVDVNVGRIVVRLGWVPLQPLPESIQIHNLEQFPDP 629
Query: 234 LK-----------------FDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
+K ++L+ L T GK+ C K+ N N CP+ + C+
Sbjct: 630 IKIQQYLWPRLCKLDHHTLYELHYQLITFGKVF--CTKRNPN-------CNACPMKDNCK 680
>gi|315230941|ref|YP_004071377.1| endonuclease III [Thermococcus barophilus MP]
gi|315183969|gb|ADT84154.1| endonuclease III [Thermococcus barophilus MP]
Length = 236
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L++ ++SQ + + + L + +PT + A+ + ++ +R G+
Sbjct: 48 LIRCIISQRNRDEVTDRVSELLFNRYPTVHALANAKIEDVQKLLRENGVG---------- 97
Query: 146 LKCLLESKGKLCLEYLR------GLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
L ++KGK +E R G + ++ EL + GIG K VL + + PV
Sbjct: 98 ---LWKNKGKWIVECSRIILEKYGGKVPDMLEELVKLPGIGRKCANIVLAYGFGKQAIPV 154
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
DTHV ISK +G P A K +L + IPKEL +N + HGK +CR
Sbjct: 155 DTHVNRISKRLGLAPPKAPPEKVEEYLKELIPKELWIYVNHAMVDHGKAICR 206
>gi|156937657|ref|YP_001435453.1| HhH-GPD family protein [Ignicoccus hospitalis KIN4/I]
gi|156566641|gb|ABU82046.1| HhH-GPD family protein [Ignicoccus hospitalis KIN4/I]
Length = 212
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 14/131 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
LV TVLSQNTTE N+ A+ +L+ T E VL+ + ++ IR GL KA+ I
Sbjct: 34 LVATVLSQNTTEKNAFAAWRNLEEALGRVTPEAVLSLGTERLKELIRPAGLQEQKASAIV 93
Query: 144 NILKCLLESKGKLCLEYLRGLSIDE-IKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ E K +I++ K L+R +GIG KT VLM ++FPVDTH
Sbjct: 94 EAARKWEEVKK----------AIEKGDKGVLTRIKGIGEKTADVVLM-SFGHEEFPVDTH 142
Query: 203 VFEISKAIGWV 213
V ++K +G V
Sbjct: 143 VKRVAKRLGLV 153
>gi|146304857|ref|YP_001192173.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera sedula
DSM 5348]
gi|145703107|gb|ABP96249.1| DNA-(apurinic or apyrimidinic site) lyase [Metallosphaera sedula
DSM 5348]
Length = 230
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
L+ T+L+QNTT+ + KA+ L K T E + A+ + I+ IR GL K IK
Sbjct: 39 LIATILTQNTTDKGAKKAYEELDKEVGITAEGLSRADPEVIKRCIRKVGLHNNKTKVIKE 98
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
+ +L G + L L + + + +L G+G KT +L+ FP+DTH+F
Sbjct: 99 VSTKILNEYGGDINKVL-DLGLPKAREKLVELPGVGKKTADVLLITCRDYPVFPIDTHIF 157
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIK 254
ISK +G + D+ ++ + + L+ + LL THG+ IK
Sbjct: 158 RISKRLG-IDGNYDKVSSFW---REVSDNLRLRAHLLLITHGRATCKAIK 203
>gi|398391038|ref|XP_003848979.1| hypothetical protein MYCGRDRAFT_28234, partial [Zymoseptoria
tritici IPO323]
gi|339468855|gb|EGP83955.1| hypothetical protein MYCGRDRAFT_28234 [Zymoseptoria tritici IPO323]
Length = 151
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 25/147 (17%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P+P PTAEEC+ EL ALH + +V + N+ + E
Sbjct: 26 PFPDFKHPTAEECKNAHRELGALH---------------------QEAVDKEFNDPNTPE 64
Query: 79 E-ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT---WEHVLAAEQKCIENAIRCGGL 134
VLD ++ +LSQ T N+ +A S+K T+ + ++ +++ ++ ++ I+CGGL
Sbjct: 65 TIPHVLDAMIVAILSQATGWNNAKRAMNSMKETYGSVFAYDEIMSGGREKLQETIKCGGL 124
Query: 135 APTKAACIKNILKCLLESKGKLCLEYL 161
K+ I +LK + E GK L++L
Sbjct: 125 HVRKSMIITTVLKQVQERHGKWDLDHL 151
>gi|220931920|ref|YP_002508828.1| endonuclease III [Halothermothrix orenii H 168]
gi|219993230|gb|ACL69833.1| endonuclease III [Halothermothrix orenii H 168]
Length = 212
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 101/245 (41%), Gaps = 38/245 (15%)
Query: 39 LALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEA 98
+A + + E +KY R T S P ++ L+ T+LS +T+
Sbjct: 1 MASYPYLQELIKYFEDRYPAPDTELNFSTPFEL--------------LIATILSAQSTDR 46
Query: 99 NSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCL 158
K L + + ++K +E I GL K+ K ++E L
Sbjct: 47 QVNKVTKKLFKKYKNPGDFASLDRKTLEREINSIGLYRNKS-------KYIIEVSNILIK 99
Query: 159 EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAAD 218
EY G + + EL + G+G KT VL + FPVDTHVF IS +G V +A
Sbjct: 100 EY--GGKVPGTRKELLKLPGVGRKTANVVLACAFNKKTFPVDTHVFRISNRLGLV-SAKR 156
Query: 219 RNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKESAGNLC---PLLNY 274
N+ L + IP+E D++ L HG+ +C+ + A + C P NY
Sbjct: 157 TNEAEKQLMEVIPEEKWVDMHHWLIFHGREVCK----------ARNPACHFCELKPFCNY 206
Query: 275 CEKSN 279
+K N
Sbjct: 207 YKKEN 211
>gi|124027163|ref|YP_001012483.1| EndoIII-related endonuclease [Hyperthermus butylicus DSM 5456]
gi|123977857|gb|ABM80138.1| predicted EndoIII-related endonuclease [Hyperthermus butylicus DSM
5456]
Length = 242
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 22/227 (9%)
Query: 54 QRLKHNMTRD-KNSVPLDMNEYDEGEEE-SVLDGLVKTVLSQNTTEANSLKAFASLKSTF 111
+RL+ ++ D ++ V L EYD E +VL G++ LSQNT++ NS++A+ L+
Sbjct: 17 ERLQRSLRVDWRDYVALVAFEYDAREHPFAVLAGII---LSQNTSDRNSIRAYLQLREMV 73
Query: 112 P-TWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKG-KLCLEYLRGLSIDEI 169
+ E VL+A + + AIR GLA KA ++ + +LE+ G K+ LE + E+
Sbjct: 74 GVSPEAVLSAPEDRLIEAIRPAGLARQKARALREAARRILEAGGEKVLLE----MPWREL 129
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQR 229
+ L G+G KT L + F VDTH I+K G V A ++T L +
Sbjct: 130 REFLLSIPGVGKKTADVFLQLVRKAPVFAVDTHAARIAKRWGLVGEKAGYDETSRALLEF 189
Query: 230 IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKESAGNLCPLLNYC 275
E + + LL G+ CR + ++CPL + C
Sbjct: 190 FGPERSENAHRLLIALGRTYCRA----------RNPRCDVCPLRDIC 226
>gi|147920603|ref|YP_685600.1| endonuclease III [Methanocella arvoryzae MRE50]
gi|110620996|emb|CAJ36274.1| predicted endonuclease III [Methanocella arvoryzae MRE50]
Length = 307
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 11/154 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWE--HVLAAEQKCIENAIRCGGLAPTKAACIK 143
L+ T+L+QN T ++ K F L+ + + + +A++K +E IR G P KA I
Sbjct: 110 LIITILTQNKTADSARKTFHRLQHHYKGIDVYKMASADKKELEELIRTSG--PYKADFII 167
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ +++ G LE++R E + L G+GPKT CVL+F L VDTH+
Sbjct: 168 RCSQEIIDRWGG-SLEWMRTAPTQEAREALMSLYGVGPKTADCVLLFALGHSVVAVDTHI 226
Query: 204 FEISKAIGWVPTAAD------RNKTYLHLNQRIP 231
+S+ G D R K L RIP
Sbjct: 227 CRVSERTGLSLATGDSEAAKRRVKEDLERKHRIP 260
>gi|338731336|ref|YP_004660728.1| endonuclease III [Thermotoga thermarum DSM 5069]
gi|335365687|gb|AEH51632.1| endonuclease III [Thermotoga thermarum DSM 5069]
Length = 208
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 12/175 (6%)
Query: 74 YDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
Y + +E+ L+ T+LSQ T + N+L A +L S +P E + A+ + I + I+ G
Sbjct: 18 YHDFDEKDPFKILISTILSQRTRDENTLVASQNLFSKYPNVESLAKAKPEEIYDLIKPSG 77
Query: 134 LAPTKAACIKNILKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHL 192
+ KA I + K +LE GK+ + EL + G+G KT VL
Sbjct: 78 MYRQKAERIIEVSKIILEKYNGKVPSDL----------DELLKLPGVGRKTANIVLFQGF 127
Query: 193 QQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
VDTHV IS +G+V T +T L++ +PK L +N + G+
Sbjct: 128 SIPAIAVDTHVHRISNRLGFVKTKTPE-QTEEELSKVLPKRLWGPINVAMVNFGR 181
>gi|217076701|ref|YP_002334417.1| nth endonuclease III [Thermosipho africanus TCF52B]
gi|217036554|gb|ACJ75076.1| nth endonuclease III [Thermosipho africanus TCF52B]
Length = 203
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 29/200 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLSQ + + N+ A +L + + T + A+++ I I+ GL KA I I
Sbjct: 27 LITTVLSQRSKDENTEIAAENLFNKYKTPFELSKAKEEDIYELIKPAGLYRQKAKRIIEI 86
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K+ +E G+ D ++ EL + G+G KT VL + VDTHV
Sbjct: 87 --------SKIIVEKYSGIVPDSLE-ELLKLPGVGRKTANIVLYVSFSKSALAVDTHVHR 137
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG-KLCR----NCIKKGGNRQ 260
IS +GWV T +T L + +PK L +N + G K+C+ NC
Sbjct: 138 ISNRLGWVNTKTPE-ETEFKLMEILPKNLWGPINGSMVEFGKKVCKPVSPNC-------- 188
Query: 261 RKESAGNLCPLLNYCEKSNK 280
+CP+ YC+ K
Sbjct: 189 ------KICPISKYCKWEGK 202
>gi|55378639|ref|YP_136489.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|55231364|gb|AAV46783.1| endonuclease III [Haloarcula marismortui ATCC 43049]
Length = 278
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEH---------------VLAAEQKCIENAIR 130
LV+T+LSQNT++ S A L + + E + A+Q + I
Sbjct: 57 LVRTILSQNTSDKASQPAHDDLMARYGGGEDANSEGDIDSTDLARALADADQPELAETIS 116
Query: 131 CGGLAPTKAACIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
GL K+ I + + + E G ++R + +++ L G+GPKT CVL
Sbjct: 117 SAGLYNQKSERIIALAQRICEEYGGEAGFDAFVRDSDPEAVRSTLLDMNGVGPKTADCVL 176
Query: 189 MFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
+F + FPVDTHV I++ +G P AD +L + +P
Sbjct: 177 LFAGGRGGVFPVDTHVHRIARRMGLAPADADHETVRAYLERDVP 220
>gi|224126427|ref|XP_002329551.1| hypothetical protein POPTRDRAFT_783774 [Populus trichocarpa]
gi|222870260|gb|EEF07391.1| hypothetical protein POPTRDRAFT_783774 [Populus trichocarpa]
Length = 121
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 52/113 (46%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V AE I + I G A IK L ++E + LE+LR D++K L
Sbjct: 6 WEAVRQAETSEIASIIEARGQQTIIAGSIKGFLNRVVEMHKSIDLEWLRYAPPDDVKDYL 65
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHL 226
F G+G K+V CV + +Q FPVD +V I +GW P HL
Sbjct: 66 LEFTGLGLKSVECVRLLSIQHVAFPVDINVAWIVFRLGWAPLKPLPGSLQFHL 118
>gi|91773087|ref|YP_565779.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Methanococcoides burtonii DSM 6242]
gi|91712102|gb|ABE52029.1| Endonuclease III [Methanococcoides burtonii DSM 6242]
Length = 204
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLSQ T + ++ L S F T + A+ I+ IR G K+ + I
Sbjct: 30 LISTVLSQRTRDEVTIPTTQKLFSVFDTPPKMANADADEIQELIRNVGFYRVKSHRLIEI 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LL+ EY G+ D+I EL + G+G KT CVL + +D VDTHV
Sbjct: 90 SRMLLD-------EY-DGIVPDDIN-ELVKLPGVGRKTANCVLTYAFDKDAIAVDTHVHR 140
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS +G V T +T + L + + KE+ D+N L+ GK CR
Sbjct: 141 ISNRMGLVKTTT-PEETEIELGKVVEKEMWKDINGLMVLFGKSTCR 185
>gi|27262162|gb|AAN87362.1| Endonuclease III [Heliobacillus mobilis]
Length = 219
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 21/191 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+L+ T+ + K L S FPT E +L+ Q+ +E I+ GL KA I
Sbjct: 34 LIATILAAQATDKSVNKITPGLFSRFPTPESMLSLTQEELEQEIKSIGLYKNKARNILAT 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + ++ +L G+G KT + VL Q VDTHVF
Sbjct: 94 CRLLVEKYGG---------QVPSVRVDLESLPGVGRKTASVVLAEAFQIPAIAVDTHVFR 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
+S +G + D KT L + IP + + L HG+ +C RK +
Sbjct: 145 VSNRLG-LAQGKDVVKTEEDLMKNIPMDQWRIAHHWLIIHGRQVC---------HARKPA 194
Query: 265 AGNLCPLLNYC 275
G+ C L YC
Sbjct: 195 CGD-CALTAYC 204
>gi|410670631|ref|YP_006923002.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Methanolobus psychrophilus R15]
gi|409169759|gb|AFV23634.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Methanolobus psychrophilus R15]
Length = 204
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLSQ T + ++ A L F + + +AE I+ I+ G KA I +I
Sbjct: 30 LISTVLSQRTRDEVTIPATRRLFEAFDSPLKMASAEIDEIQVLIKDVGFYRVKAQRIIDI 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ +L+ G G+ D + EL + G+G KT CVL + ++D VDTHV
Sbjct: 90 SRIMLKDYG--------GIVPDSMN-ELLKLPGVGRKTANCVLGYAFEKDVIAVDTHVHR 140
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS G V T++ ++T L + + ++ D+N L+ G+ +CR
Sbjct: 141 ISNRFGLVKTSSP-DETEKELEKVVSRQDWKDINGLMVLFGQNVCR 185
>gi|296242399|ref|YP_003649886.1| HhH-GPD family protein [Thermosphaera aggregans DSM 11486]
gi|296094983|gb|ADG90934.1| HhH-GPD family protein [Thermosphaera aggregans DSM 11486]
Length = 230
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 75/138 (54%), Gaps = 7/138 (5%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTW--EHVLAAEQKCIENAIRCGGLAPTK 138
S+ + +V VLSQNT++ N++KA +L+ F E VL + + + I+ G+ +
Sbjct: 31 SLFEFIVAVVLSQNTSDKNAVKALENLRKRFGVINPESVLNVGIEELADLIKPAGIHRER 90
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAE---LSRFRGIGPKTVACVLMFHLQQD 195
+ + + K E+ + L +R + ++++A L R G+GPKT VL+ +
Sbjct: 91 SRILLELAKIFCENMFEEKL--IREVEKNDVEASRKILMRLPGVGPKTADVVLLVFFGKP 148
Query: 196 DFPVDTHVFEISKAIGWV 213
FPVDTH+ I+K +G+V
Sbjct: 149 VFPVDTHIRRITKRLGYV 166
>gi|386811544|ref|ZP_10098769.1| putative glycosylase [planctomycete KSU-1]
gi|386403814|dbj|GAB61650.1| putative glycosylase [planctomycete KSU-1]
Length = 214
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 8/174 (4%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKST---FPTWEHVLAAEQKCIENAIRCGGLAP 136
E+ + ++ +L+QNT+ +N KA +LK+T P H L + + IR G
Sbjct: 27 ETPFEIIIGAILTQNTSWSNVEKAIRNLKNTGKLTPEAIHELNVTE--LSQLIRPSGFFN 84
Query: 137 TKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD 196
KA IK + L + G L L + +++EL +GIGP+T +L++
Sbjct: 85 VKARRIKTFMDWLFSNYGG-SLSRLFAQDLQTLRSELLAVKGIGPETADSILLYAGNLPT 143
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTHGKL 248
F VDT+ + I G++P + ++ + +PK++K + + LL GK+
Sbjct: 144 FVVDTYTYRIFSRHGFIPEESSYDEIKSLFEENLPKDVKLFNEYHALLVNTGKM 197
>gi|307596439|ref|YP_003902756.1| HhH-GPD family protein [Vulcanisaeta distributa DSM 14429]
gi|307551640|gb|ADN51705.1| HhH-GPD family protein [Vulcanisaeta distributa DSM 14429]
Length = 232
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 82 VLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAPTKA 139
+ L+ T+L+QNT + N+L+A+ +L T + ++ + + NAI+ G+ +A
Sbjct: 34 IFKALIVTILTQNTNDRNALRAYENLIRVAGDITPQRLIGIGEDALANAIKPAGMHRIRA 93
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
I + + +LE G L ++ +DE + L G+G KT A V++ +L + FPV
Sbjct: 94 RKIIELSRVILERYGG-DLTWIVDSPLDEARKALLELPGVGEKT-ADVILVNLGKPTFPV 151
Query: 200 DTHVFEISKAIGWV 213
DTH+ IS +G V
Sbjct: 152 DTHITRISIRLGIV 165
>gi|385805176|ref|YP_005841574.1| HhH-GPD family protein [Fervidicoccus fontis Kam940]
gi|383795039|gb|AFH42122.1| HhH-GPD family protein [Fervidicoccus fontis Kam940]
Length = 225
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 21/194 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LSQNTT+ N+++AF +L + + + +E IR GL +KA IK +
Sbjct: 44 LISIILSQNTTDRNAIEAFLNLVERGLDFRKLNSMSLGELEEIIRISGLYKSKAETIKRL 103
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L SK +L L+ L +E + EL+ +GIG KT L + FPVD H+
Sbjct: 104 AGFL--SKDELFLKNLCKKPPEEARRELTSIKGIGKKTADLFLSVYCNMPLFPVDRHIKR 161
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC----RNCIKKGGNRQR 261
+++ + D+ Y ++Q + L D N L H KL + C KG
Sbjct: 162 VTERL------LDKKMDYEEVSQFWREVL--DRNLLKEAHYKLIYVGRKFCRPKG----- 208
Query: 262 KESAGNLCPLLNYC 275
+LCPL + C
Sbjct: 209 --EKCDLCPLADIC 220
>gi|419759441|ref|ZP_14285740.1| endonuclease III [Thermosipho africanus H17ap60334]
gi|407515451|gb|EKF50196.1| endonuclease III [Thermosipho africanus H17ap60334]
Length = 203
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 29/200 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLSQ + + N+ A +L + + T + A+++ I I+ GL KA I I
Sbjct: 27 LITTVLSQRSKDENTEIAAENLFNKYKTPLELSKAKEEDIYELIKPAGLYRQKAKRIIEI 86
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K+ +E G+ D ++ EL + G+G KT VL + VDTHV
Sbjct: 87 --------SKIIVEKYSGIVPDSLE-ELLKLPGVGRKTANIVLYVSFSKPALAVDTHVHR 137
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG-KLCR----NCIKKGGNRQ 260
IS +GWV T +T L + +PK L +N + G K+C+ NC
Sbjct: 138 ISNRLGWVNTKTPE-ETEFKLMEILPKNLWGPINGSMVEFGKKVCKPVSPNC-------- 188
Query: 261 RKESAGNLCPLLNYCEKSNK 280
+CP+ YC+ K
Sbjct: 189 ------KICPISKYCKWEGK 202
>gi|118430904|ref|NP_147001.2| endonuclease III [Aeropyrum pernix K1]
gi|116062229|dbj|BAA79061.2| endonuclease III [Aeropyrum pernix K1]
Length = 229
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFP-TWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
L VLSQNT + NS++A+ L+ T T E +L A + AIR GL KA+ +K
Sbjct: 46 LAAVVLSQNTNDKNSIRAYLKLRQTIGVTPEAILEASYDDLVEAIREAGLPRQKASALKA 105
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL-MFHLQQDDFPVDTHV 203
+ + ++ G+ YL +E++ +L RGIGPKT L + F VDTH
Sbjct: 106 LAEAVVRWGGE---NYLLKAPPEELREKLMSIRGIGPKTADVFLSLVRKAPGVFAVDTHA 162
Query: 204 FEISKAIGWV 213
+++ G V
Sbjct: 163 ARVARRWGLV 172
>gi|163790656|ref|ZP_02185084.1| hypothetical protein CAT7_11385 [Carnobacterium sp. AT7]
gi|159874104|gb|EDP68180.1| hypothetical protein CAT7_11385 [Carnobacterium sp. AT7]
Length = 217
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 11/189 (5%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPT 137
E+++ + V +L Q TTE N+ KA +L++ E + E + ++ IR G
Sbjct: 25 EDDNRISDWVSMILIQQTTEKNAKKALKNLENVLTV-EQLQKIEIEKLQELIRPAGFFKQ 83
Query: 138 KAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDF 197
K+ IK +++ + + G E R S E++ EL +G+G +T +L++ +++ F
Sbjct: 84 KSLYIKALIQWFVSNGGDF--EMFRSYSTAELRKELLSIKGVGFETADAMLLYIFERNVF 141
Query: 198 PVDTHVFEISKAIGW--VPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
D + + +G+ +K + HL ++IP +L + + + HGK K
Sbjct: 142 IADQYAIRLFSRLGFGEYKNYEAMHKEFNHLTKQIPYDLCKEWHAAIDLHGK------KY 195
Query: 256 GGNRQRKES 264
G N++ E+
Sbjct: 196 GKNKELDET 204
>gi|21227382|ref|NP_633304.1| endonuclease III [Methanosarcina mazei Go1]
gi|20905743|gb|AAM30976.1| Endonuclease III [Methanosarcina mazei Go1]
Length = 205
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 12/168 (7%)
Query: 85 GLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
L+ TV+S T + + A L F T E ++ A + IE IR G KA IK
Sbjct: 28 ALISTVMSHRTRDDVTYPAAKKLFERFSTPEEMVEANVEDIEELIRDVGFYRVKAGRIKE 87
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF-HLQQDDFPVDTHV 203
I + LLE G D+++ L + G+G KT CVL L++D VDTHV
Sbjct: 88 ISRILLEDYN--------GKVPDDMET-LLKLPGVGRKTANCVLAHAFLKEDALAVDTHV 138
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS +G V T + +T + L + +P++ +N LL G+ +CR
Sbjct: 139 HRISNRLGRVVT-KNPEETEMELKKLLPQKYWRHVNILLVKFGQNVCR 185
>gi|389861151|ref|YP_006363391.1| HhH-GPD family protein [Thermogladius cellulolyticus 1633]
gi|388526055|gb|AFK51253.1| HhH-GPD family protein [Thermogladius cellulolyticus 1633]
Length = 227
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 21/213 (9%)
Query: 73 EYDEGE------EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKC 124
E EGE ++ + LV +LSQNT + N+++A ++LKS T E VL+ +
Sbjct: 17 EIREGEFVGLVARRNLFEHLVAVLLSQNTNDKNAIRALSNLKSRLGKLTPEKVLSLDVGE 76
Query: 125 IENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTV 184
+ I+ GL +A I + L + + E +R + + E + L G+G KT
Sbjct: 77 LAQLIKPAGLHLQRARRIVELASYLRDRLEEFESE-VRRMDVLEAREVLMNLPGVGDKTA 135
Query: 185 ACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYT 244
VL+ + + FPVDTH+ I+ +G+V K +P + + + LL
Sbjct: 136 DVVLLVYFGKPAFPVDTHIKRITTRLGFV-KGGSYKKVSGFWQSCLPPDKYLETHLLLIQ 194
Query: 245 HGK-LCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
HG+ +C+ ++ + CP+ +CE
Sbjct: 195 HGRAICKA----------RKPLCHECPIKEFCE 217
>gi|237808204|ref|YP_002892644.1| endonuclease III [Tolumonas auensis DSM 9187]
gi|237500465|gb|ACQ93058.1| endonuclease III [Tolumonas auensis DSM 9187]
Length = 213
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 86/210 (40%), Gaps = 19/210 (9%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
N E E S + L+ +LS T+ + KA A L T E + A +++ I+
Sbjct: 19 NPTTELEYTSPFELLISVILSAQATDVSVNKATAKLYPVANTPEAIQALGVDGLKSYIKT 78
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL KA I LLE + E +A L G+G KT VL
Sbjct: 79 IGLYNAKAENIIKTCAILLEKHNG---------EVPENRAALEALPGVGRKTANVVLNTA 129
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
VDTH+F ++ G+ P D N+ L + +P E K D++ L HG+
Sbjct: 130 FDWPTIAVDTHIFRVANRTGFAP-GKDVNEVEEKLLRHVPAEFKLDVHHWLILHGRY--T 186
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
CI RK G+ C + + CE KT
Sbjct: 187 CI------ARKPRCGS-CLIEDLCEYKQKT 209
>gi|237756607|ref|ZP_04585124.1| endonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691238|gb|EEP60329.1| endonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
Length = 215
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T + + +A L T E +L +K IE I G KA IK I
Sbjct: 39 LISTILSLRTKDQTTAQASDRLFKVADTPEKILKLSEKEIEELIYPVGFYRNKAKIIKEI 98
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+E D+++ LS F+G+G KT VL + VD HV
Sbjct: 99 SKILVEK--------FNSKVPDDLETLLS-FKGVGRKTANLVLSEGFGKPAICVDVHVHR 149
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
IS IG V T + +T L + +PK+ D+N + G+ +K N+
Sbjct: 150 ISNRIGLVKT-KNPEETEFKLMEILPKKYWKDINFVFVAFGQTICKPVKPKCNQ------ 202
Query: 266 GNLCPLLNYCEKSNKT 281
CP++ YCE K+
Sbjct: 203 ---CPIIKYCEYDKKS 215
>gi|53802973|ref|YP_115292.1| endonuclease III [Methylococcus capsulatus str. Bath]
gi|53756734|gb|AAU91025.1| endonuclease III [Methylococcus capsulatus str. Bath]
Length = 213
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 27/200 (13%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ VLS T+ + KA A L T E +LA ++ + I+ GL +KA KNI
Sbjct: 33 LIAVVLSAQATDKSVNKATAKLFPVANTPEAILALREEGLREYIKTIGLFNSKA---KNI 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
++ +L +E RG + + L G+G KT +L Q VDTH+F
Sbjct: 90 IRLC-----ELLIERHRG-EVPRDRDALEALPGVGRKTANVILNTAFGQPAIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYL----HLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQR 261
++ G P KT L L + P+E + D + LL HG+ CI R
Sbjct: 144 VANRTGLAP-----GKTVLAVEKALEKHTPREFRQDAHHLLILHGRY--TCI------AR 190
Query: 262 KESAGNLCPLLNYCEKSNKT 281
K CP+ + CE +KT
Sbjct: 191 KPKCSQ-CPIADLCEYPDKT 209
>gi|386002356|ref|YP_005920655.1| DNA-(Apurinic or apyrimidinic site) lyase, putative [Methanosaeta
harundinacea 6Ac]
gi|357210412|gb|AET65032.1| DNA-(Apurinic or apyrimidinic site) lyase, putative [Methanosaeta
harundinacea 6Ac]
Length = 149
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
+D LV+T+LSQNTT AN+ +AF SLK +P ++ +L+A + + IRCGGLA K I
Sbjct: 46 VDLLVQTILSQNTTSANTHRAFESLKRAYPAYQALLSAPDEEVAGLIRCGGLANIKTRRI 105
Query: 143 KNILKCL 149
K L +
Sbjct: 106 KEALAMI 112
>gi|357129088|ref|XP_003566199.1| PREDICTED: uncharacterized protein LOC100844361 [Brachypodium
distachyon]
Length = 1546
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 34/176 (19%)
Query: 126 ENAIRCGGLA----PTKAACI----KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFR 177
E+ ++ G +A P KAA K+ L L+ G + LE+LR + D K L R
Sbjct: 1016 ESTLKSGFIAHNGVPDKAAQASRPKKSFLNRLVRDHGSIDLEWLRDIPPDSAKDYLLSIR 1075
Query: 178 GIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP------ 231
G+G K+V CV + L FPVDT+V I +GWVP LHL + P
Sbjct: 1076 GLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQ 1135
Query: 232 -----------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
++ ++L+ + T GK+ C K N N CP+ + C+
Sbjct: 1136 KYIWPRLCKLDQQTLYELHYQMITFGKVF--CTKSKPN-------CNACPMRSECK 1182
>gi|222099270|ref|YP_002533838.1| Endonuclease III [Thermotoga neapolitana DSM 4359]
gi|221571660|gb|ACM22472.1| Endonuclease III [Thermotoga neapolitana DSM 4359]
Length = 208
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLSQ T + N+ +A L + T E + A+ + + + I+ G+ KA I I
Sbjct: 26 LISTVLSQRTRDENTERAARKLFEVYRTPEDLAKAKPEDLYDLIKESGMYRQKAERIVKI 85
Query: 146 LKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
K ++E GK + + EL R G+G KT VL ++ VDTHV
Sbjct: 86 SKIIVEKYSGK----------VPDTLEELLRLPGVGRKTANIVLWVGFRKPALAVDTHVH 135
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS +GWV T +T L + +P++L +N + G+ +CR
Sbjct: 136 RISNRLGWVKTKTP-EETEKALKRLLPEKLWGPINGSMVEFGRNVCR 181
>gi|225387725|ref|ZP_03757489.1| hypothetical protein CLOSTASPAR_01495 [Clostridium asparagiforme
DSM 15981]
gi|225046188|gb|EEG56434.1| hypothetical protein CLOSTASPAR_01495 [Clostridium asparagiforme
DSM 15981]
Length = 227
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 21/193 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS +T+ + L ++P E++ A + IE IR GL +KA KNI
Sbjct: 44 LVAIMLSAQSTDKQVEEVLPELYRSYPKVEYMANAPVEEIERNIRSIGLYKSKA---KNI 100
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
KC G++ EY + E EL G+G KT L VDTHVF
Sbjct: 101 KKCC----GQIVTEY--AGKVPETIGELLGLAGVGRKTATLYLADAHGIPGVTVDTHVFR 154
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS+ +GW + + L L + +P + +N L HG+ +C +++
Sbjct: 155 ISRRLGWA-WGKNPAQVELELQKVLPVDYWNRINFQLIYHGRAVCTA----------RKA 203
Query: 265 AGNLCPLLNYCEK 277
+CPL +C K
Sbjct: 204 HCEICPLETWCAK 216
>gi|347542986|ref|YP_004857623.1| endonuclease III [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346986022|dbj|BAK81697.1| endonuclease III [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 209
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 10/174 (5%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E ES L+ TVLS TT+ + SL S +P E L +++ +++ I+C GL
Sbjct: 22 ELEYESPFQLLIATVLSAQTTDKKVNEVTNSLFSEYPKLEDFLNLDEEKLKDKIKCIGLY 81
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TK+ I N+ K L E G + + + EL G+G KT V+
Sbjct: 82 RTKSKNIINLCKILKEE--------FNG-EVPKTRDELITLPGVGRKTANVVISNCFGVQ 132
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC 249
F VD HVF +S IG + + +T L L + I + L + + HG+ C
Sbjct: 133 AFAVDVHVFRVSNRIG-IANSKTPEQTELELMKNIDESLWTICHHTIIFHGRRC 185
>gi|448352659|ref|ZP_21541440.1| HhH-GPD family protein [Natrialba hulunbeirensis JCM 10989]
gi|445641938|gb|ELY95009.1| HhH-GPD family protein [Natrialba hulunbeirensis JCM 10989]
Length = 278
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 17/203 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-------KSTFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
LV+T+LSQNT++ S A +L S + + AEQ + I GL K
Sbjct: 64 LVRTILSQNTSDKASQPAHDALIDRYGDSSSRADLADALAHAEQSQLAETISSAGLYNQK 123
Query: 139 AACIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD 196
+ + + + + + G ++ + D ++ L RG+GPKT CVL+F ++
Sbjct: 124 SGMLIDAAEWVCDEFGSAAEFDRFVTDEAPDTVRETLLDVRGVGPKTADCVLLFAGGRNG 183
Query: 197 -FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-KELKFDLNCLLYTHGKLCRNCIK 254
FPVDTHV I + +G P AD + L +P + F + + C +
Sbjct: 184 VFPVDTHVHRIYRRMGIAPPEADHEEVRAVLEAEVPAAKCGFGHTATIQFGREFC--TAR 241
Query: 255 KGGNRQRKESAGNLCPLLNYCEK 277
K + E+ CP+ + CE+
Sbjct: 242 KPACLEDPEA----CPMADLCEQ 260
>gi|308803847|ref|XP_003079236.1| DEMETER protein (ISS) [Ostreococcus tauri]
gi|116057691|emb|CAL53894.1| DEMETER protein (ISS), partial [Ostreococcus tauri]
Length = 856
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 23/146 (15%)
Query: 149 LLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
++ +G L LE+LR DE + L G+G KT +CVL+ L + DFPVD +V I
Sbjct: 244 VMAQRGCLSLEFLREAPTDEAREYLLALDGMGVKTTSCVLLLALHRTDFPVDVNVGRIMA 303
Query: 209 AIGWVP----TA-------ADRNKTYLHLNQRIPK---ELKFDLNCLLYTHGKLCRNCIK 254
+GWVP TA A Y L +R+ ++ ++L+ + T GK+ C K
Sbjct: 304 RLGWVPLESETALEELAQYAPEPAVYTFLRKRLNSFGIDMLYELHYHMITLGKVF--CGK 361
Query: 255 KGGNRQRKESAGNLCPLLNYCEKSNK 280
+ N CPL + CE + +
Sbjct: 362 RLPN-------CGACPLRDICEYAKQ 380
>gi|289580004|ref|YP_003478470.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
gi|448281243|ref|ZP_21472550.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
gi|289529557|gb|ADD03908.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
gi|445579173|gb|ELY33569.1| HhH-GPD family protein [Natrialba magadii ATCC 43099]
Length = 278
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 17/203 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-------KSTFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
LV+T+LSQNT++ S A +L S + AEQ + I GL K
Sbjct: 64 LVRTILSQNTSDKASQPAHDALIDRYGHSSSRADLAAALAHAEQSQLAETISSAGLYNQK 123
Query: 139 AACIKNILKCLLESKGKL--CLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD 196
+A + + + + + G ++ + D ++ L RG+GPKT CVL+F +
Sbjct: 124 SAMLIDAAEWVCDEFGSADEFDRFVTDETPDTVRETLLDVRGVGPKTADCVLLFAGGRGG 183
Query: 197 -FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-KELKFDLNCLLYTHGKLCRNCIK 254
FPVDTHV I + +G P AD + L +P + F + + C +
Sbjct: 184 VFPVDTHVHRIYRRMGIAPPEADHEEVRTVLEAEVPAAKCGFGHTATIQFGREFC--TAR 241
Query: 255 KGGNRQRKESAGNLCPLLNYCEK 277
K + E+ CP+ + CE+
Sbjct: 242 KPACLEDPEA----CPMADICEQ 260
>gi|347524474|ref|YP_004782044.1| HhH-GPD family protein [Pyrolobus fumarii 1A]
gi|343461356|gb|AEM39792.1| HhH-GPD family protein [Pyrolobus fumarii 1A]
Length = 241
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 15/184 (8%)
Query: 74 YDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP---TWEHVLAAEQKCIENAIR 130
Y + S+ +V VLSQNT + N+++AF L T E VL + +E A++
Sbjct: 29 YAKERGASLFALIVGVVLSQNTNDRNAIEAFRRLAEALGGVVTPEAVLRTPRDRLEEAVK 88
Query: 131 CGGLAPTKAACIKNILKCLLES---KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACV 187
G+ + I I + +E+ + LC + I+ + L RG+GPKTV V
Sbjct: 89 PAGMYRRRVETILGIARFFVENPWVEKSLC-----KMGIENARKLLLGLRGVGPKTVDVV 143
Query: 188 LMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG- 246
LM + FPVDTH+ I + G V + + + + P E++ +++ LL G
Sbjct: 144 LMNYCGFPVFPVDTHISRILERWG-VRGGYEEKRKWGEIF--FPPEVRREMHMLLIELGR 200
Query: 247 KLCR 250
+ CR
Sbjct: 201 RYCR 204
>gi|448671097|ref|ZP_21687089.1| endonuclease III [Haloarcula amylolytica JCM 13557]
gi|445766179|gb|EMA17313.1| endonuclease III [Haloarcula amylolytica JCM 13557]
Length = 278
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 18/164 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPT--------------WEHVLA-AEQKCIENAIR 130
LV+T+LSQNT++ S A L + + + LA A+Q + I
Sbjct: 57 LVRTILSQNTSDKASQPAHDELMARYGSDGGDADGEGDADTDLARALADADQPELAETIS 116
Query: 131 CGGLAPTKAACIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
GL K+ I + + + E G E++R + +++ L G+GPKT CVL
Sbjct: 117 SAGLYNQKSERIIALAQRICEEYGGEAGFDEFVRDSDPEAVRSTLLDMNGVGPKTADCVL 176
Query: 189 MFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
+F + FPVDTHV I++ +G P AD +L + +P
Sbjct: 177 LFAGGRGGVFPVDTHVHRIARRMGLAPPDADHETVREYLERDVP 220
>gi|448652011|ref|ZP_21681024.1| endonuclease III [Haloarcula californiae ATCC 33799]
gi|445769414|gb|EMA20488.1| endonuclease III [Haloarcula californiae ATCC 33799]
Length = 238
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWE--------------HVLA-AEQKCIENAIR 130
LV+T+LSQNT++ S A L + + E LA A+Q + I
Sbjct: 57 LVRTILSQNTSDKASQSAHDDLMARYGGGEDANSEGDIDSTDLARALADADQPELAETIS 116
Query: 131 CGGLAPTKAACIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
GL K+ I + + + E G ++R +++++ L G+GPKT CVL
Sbjct: 117 SAGLYNQKSERIIALAQRICEEYGGEAGFDAFVRDSDSEKVRSTLLDMNGVGPKTADCVL 176
Query: 189 MFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
+F + FPVDTHV I++ IG P A +L + +P
Sbjct: 177 LFAGGRGGVFPVDTHVHRIARRIGLAPADAAHETVRAYLERDVP 220
>gi|251771121|gb|EES51705.1| putative endonuclease III [Leptospirillum ferrodiazotrophum]
Length = 213
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 86 LVKTVLSQNT----TEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAAC 141
L+ T+LS T EA SL+ F S P E + E++ +E I G TKA
Sbjct: 35 LLSTILSLRTRDPVMEAASLRLF----SRAPDLESIALMEEEELERIIYPVGFYRTKAKT 90
Query: 142 IKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
IK I K+ LE +G EI LS G+G KT VL + VDT
Sbjct: 91 IKQI--------AKIVLEKWKGSLPSEISPLLS-LPGVGLKTATLVLGAGFGKSVLTVDT 141
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
HV I+ G V T D + TY L++ +P LK +N +L + G+
Sbjct: 142 HVHRIANRWGAVKT-KDADATYWELDKIVPNTLKLKVNPVLVSFGQ 186
>gi|14520880|ref|NP_126355.1| endonuclease III [Pyrococcus abyssi GE5]
gi|5458097|emb|CAB49586.1| nth endonuclease III [Pyrococcus abyssi GE5]
gi|380741424|tpe|CCE70058.1| TPA: endonuclease III [Pyrococcus abyssi GE5]
Length = 222
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 12/196 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L++ ++SQ + + + L +P+ E + +A + ++N +R K ++
Sbjct: 38 LIRCIISQRNRDEVTDRVSEELFKRYPSIEAIASASVEEMQNFLRS-----LKVGLWRSK 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K ++E+ ++ LE +G D+ + EL + GIG K VL + PVDTHV+
Sbjct: 93 GKWIVET-SRIILEKYKGRVPDKFE-ELIKLPGIGRKCANIVLAYGFGIPAIPVDTHVYR 150
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS+ +G P A + L + IP+E +N + HGK +CR + KE
Sbjct: 151 ISRRLGLAPWDASPEEVEERLKELIPREEWIYVNHAMVDHGKSVCRPIKPRCDECPLKE- 209
Query: 265 AGNLCPLLNYCEKSNK 280
LCP + SN+
Sbjct: 210 ---LCPRIGVQANSNQ 222
>gi|255072753|ref|XP_002500051.1| DNA glycosylase [Micromonas sp. RCC299]
gi|226515313|gb|ACO61309.1| DNA glycosylase [Micromonas sp. RCC299]
Length = 2192
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 24/178 (13%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLL-ESKGKLCLEYLRGLSIDEIKAE 172
W V+ A + IRC G+ +A I+ IL+ + E KG+L LE+LR +++ +
Sbjct: 1397 WRAVMNAPLGDVVECIRCRGMHFMQARRIQRILRRIHDERKGELSLEFLRNCTVEIARGY 1456
Query: 173 LSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRN-----------K 221
L G G KTV+C+ + L + DFPVD +V I +GWVP ++
Sbjct: 1457 LLSLEGFGVKTVSCITLLSLFRADFPVDVNVGRIMARLGWVPLETEQALEELAEYAPEPA 1516
Query: 222 TYLHLNQRIPK---ELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
Y L +R+ + F+L+ + T GK+ C K+ N + CPL + CE
Sbjct: 1517 VYTFLRERLNSFGLQTLFELHYHMITLGKVF--CEKRTPNCRA-------CPLRDMCE 1565
>gi|388565477|ref|ZP_10151968.1| endonuclease III [Hydrogenophaga sp. PBC]
gi|388267366|gb|EIK92865.1| endonuclease III [Hydrogenophaga sp. PBC]
Length = 211
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 19/207 (9%)
Query: 75 DEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGL 134
E E +V + L +LS T+ + KA L T + +LA Q +E+ I+ GL
Sbjct: 22 SELEYTTVFELLAAVLLSAQATDVSVNKATRKLFPVANTPQAILALGQDGLESYIKTIGL 81
Query: 135 APTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ 194
+KA + + L+E G + + L G+G KT VL Q
Sbjct: 82 FRSKAKHLMQACRILVERHGG---------EVPNTREALEALPGVGRKTANVVLNVAFGQ 132
Query: 195 DDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIK 254
VDTH+F +S G P L L QR+P E D + L HG+ C+
Sbjct: 133 PTMAVDTHIFRVSNRTGLAPGKTPL-AVELALMQRVPPEYAVDSHHWLILHGRYV--CLA 189
Query: 255 KGGNRQRKESAGNLCPLLNYCEKSNKT 281
+ R C + YC+ + KT
Sbjct: 190 RKPQCYR-------CAVAAYCDFTPKT 209
>gi|330837763|ref|YP_004412404.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
gi|329749666|gb|AEC03022.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
Length = 237
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 85/199 (42%), Gaps = 21/199 (10%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPT 137
E+ S L+ T++S T +A + A L S T +LA Q+ IE AI G T
Sbjct: 50 EDSSPFRVLIATLISLRTKDAVTYAASRRLFSVANTPRAMLALSQEQIETAIAPAGFFRT 109
Query: 138 KAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDF 197
KA I I K L+E G L + K L G+G KT L D
Sbjct: 110 KARNILEISKKLVEEHGGL---------VPPDKEALVSLPGVGTKTANLTLNLGFGIDAI 160
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG-KLCRNCIKKG 256
VD HV I+ GWV T + +T L + +P+ LN LL ++G K+C + +
Sbjct: 161 CVDCHVHTIANRTGWVST-KNPEQTEKELEKILPRRFWIPLNELLVSYGQKICTSVSPR- 218
Query: 257 GNRQRKESAGNLCPLLNYC 275
++CP+ + C
Sbjct: 219 ---------CSICPIASTC 228
>gi|402850491|ref|ZP_10898688.1| Endonuclease III [Rhodovulum sp. PH10]
gi|402499258|gb|EJW10973.1| Endonuclease III [Rhodovulum sp. PH10]
Length = 259
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 29/216 (13%)
Query: 72 NEYDEGEEESV--LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
N +GE E + LV VLS T+A KA L + T E ++A + + + I
Sbjct: 59 NPEPKGELEHINPFTLLVAVVLSAQATDAGVNKATRGLFAVADTPEKMVALGEPRLRDYI 118
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
+ GL TKA + + + L+ G + + + L G+G KT VL
Sbjct: 119 KTIGLFNTKAKNVIALSERLIAEHGGI---------VPATREALETLPGVGRKTANVVLN 169
Query: 190 FHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTH 245
Q+ F VDTH+F +S G P KT L + Q+ +PK+ + + L H
Sbjct: 170 IAYGQETFAVDTHIFRVSNRTGLAP-----GKTPLEVEQKLEQVVPKDFRLHAHHWLILH 224
Query: 246 GKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
G+ ++ +CP+ + C +KT
Sbjct: 225 GRYVCTALR---------PRCPVCPIADLCRYPDKT 251
>gi|226499668|ref|NP_001146555.1| uncharacterized protein LOC100280151 [Zea mays]
gi|219887797|gb|ACL54273.1| unknown [Zea mays]
Length = 501
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%)
Query: 142 IKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
IK L L+ G + LE+LR + D+ K L RG+G K+V CV + L FPVDT
Sbjct: 9 IKEFLNRLVTDHGSIDLEWLRDVQPDKAKDFLLSIRGLGLKSVECVRLLTLHHMAFPVDT 68
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
+V I +GWVP LHL + P
Sbjct: 69 NVGRICVRLGWVPLQPLPESLQLHLLEMYP 98
>gi|344212676|ref|YP_004796996.1| endonuclease III [Haloarcula hispanica ATCC 33960]
gi|343784031|gb|AEM58008.1| endonuclease III [Haloarcula hispanica ATCC 33960]
Length = 277
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 17/165 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE--------------QKCIENAIRC 131
LV+T+LSQNT++ S A L + + + + Q + I
Sbjct: 57 LVRTILSQNTSDKASQPAHDELMARYGSGGGAASGGGTDADLARALADADQPELAETISS 116
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
GL K+ I + + + E G E++R +++++ L G+GPKT CVL+
Sbjct: 117 AGLYNQKSERIIALAQRICEEYGGEAGFDEFVRDSDPEKVRSTLLDMNGVGPKTADCVLL 176
Query: 190 FHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
F + FPVDTHV I++ +G P AD +L + +P E
Sbjct: 177 FAGGRGGVFPVDTHVHRIARRMGLAPPDADHETVREYLERDVPGE 221
>gi|20093393|ref|NP_619468.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
gi|19918762|gb|AAM07948.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
Length = 216
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TV+S T + + A L F T E ++ A+ + IE I+ G K+ IK I
Sbjct: 41 LISTVMSHRTRDDVTYPAARKLFERFSTPEEMVGADVEEIEALIKDVGFYRVKSGRIKEI 100
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
LLE EY G D+++ L + G+G KT CVL +D VDTHV
Sbjct: 101 SGILLE-------EY-DGEVPDDMET-LLKLPGVGRKTANCVLAHAFLKDALAVDTHVHR 151
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS +G V T +T L L + P++ +N LL G+ +CR
Sbjct: 152 ISNRLGLVETKTP-EETELELKKIFPQKYWKHINLLLVKLGQNICR 196
>gi|168067245|ref|XP_001785533.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662839|gb|EDQ49643.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1894
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL-KCLLESKGKLCLEYLRGLSIDEIKAE 172
W V A + + I+ G A +K L + + G + LE++R L ++ KA
Sbjct: 1243 WNAVQQASVHEVADVIKNRGQHNALAGRLKAFLDRVHRDQNGVIDLEWIRKLPPEDAKAF 1302
Query: 173 LSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVP 214
L FRG+G K+V C+ + L FPVDT+V I+ +GWVP
Sbjct: 1303 LLSFRGVGLKSVECIRLLCLHHPSFPVDTNVGRIAVRLGWVP 1344
>gi|429216868|ref|YP_007174858.1| endoIII-related endonuclease [Caldisphaera lagunensis DSM 15908]
gi|429133397|gb|AFZ70409.1| putative endoIII-related endonuclease [Caldisphaera lagunensis DSM
15908]
Length = 235
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 22/183 (12%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
LV +LSQNTT+ N++KAF +L + T E ++ + IR GL K+ I
Sbjct: 54 LVSIILSQNTTDKNAIKAFNNLYEKTGLDPEKIVDLGVDNVSEIIRTAGLPKQKSHSIIE 113
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
+ K ++ KG+ +YL ++K EL R GIG KT L F FPVDTH+
Sbjct: 114 LAK-FVKEKGE---KYLLEKDPLQLKNELMRIPGIGEKTSDVFLSFTRNYPVFPVDTHIR 169
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNC----LLYTHGKL--------CRNC 252
I A+ W +D+N +Y ++Q + + DL+ LL T G++ C+ C
Sbjct: 170 RI--ALRW--GLSDKN-SYKSISQALIEFFGPDLSNKAHKLLITFGRIYCKAKNPRCKEC 224
Query: 253 IKK 255
K
Sbjct: 225 FLK 227
>gi|87312107|ref|ZP_01094213.1| HhH-GPD protein [Blastopirellula marina DSM 3645]
gi|87285203|gb|EAQ77131.1| HhH-GPD protein [Blastopirellula marina DSM 3645]
Length = 221
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 14/195 (7%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTF---PTWEHVLAAEQKCIENAIRCGGLAP 136
+S L+ +V VL+QNT+ N KA +LK P H E+ + IR G
Sbjct: 25 DSPLEIMVGAVLTQNTSWKNVEKAIVNLKEEGLLDPFKLHETPVEE--LAEIIRPAGYYR 82
Query: 137 TKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD 196
KA ++N+++ +++ LE + S+D ++ +L GIGP+T +L++
Sbjct: 83 LKAKRLQNLMRYVVDVHSG-DLEAMFACSVDSLREDLLALNGIGPETADAILLYAGNLPT 141
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKG 256
F VDT+ + K GW+ AD Y + + +L D+ H L R G
Sbjct: 142 FVVDTYTSRVLKRHGWIEQEAD----YHQIQDQFVSQLPEDVALFNEYHALLVR----VG 193
Query: 257 GNRQRKESAGNLCPL 271
RK CPL
Sbjct: 194 NGHCRKTPKCETCPL 208
>gi|302349120|ref|YP_003816758.1| endoIII-related endonuclease [Acidilobus saccharovorans 345-15]
gi|302329532|gb|ADL19727.1| predicted EndoIII-related endonuclease [Acidilobus saccharovorans
345-15]
Length = 230
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 82/196 (41%), Gaps = 13/196 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LSQN+ + NS+ A+ LK + A +E IR G+ KA I+ +
Sbjct: 44 LVAIILSQNSNDRNSIAAYDDLKRATGLDPARILALGDGLEQVIRRAGMVRQKARAIREL 103
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LE +++L I+E++ L RGIG KTV L + + F VDTH
Sbjct: 104 ARLALERG----VDFLEHGDINEVERALLSIRGIGSKTVDVFLSLYRKVPRFAVDTHAKR 159
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
I+ G A + L E + + LL G+ C + N + E
Sbjct: 160 IAARWGLTRKGASYEEVSGALLNFFGPERSDEAHRLLIAFGRAY--CTAR--NPRCSE-- 213
Query: 266 GNLCPLLNYCEKSNKT 281
CPL YC + T
Sbjct: 214 ---CPLRQYCPSATAT 226
>gi|337283826|ref|YP_004623300.1| endonuclease III [Pyrococcus yayanosii CH1]
gi|334899760|gb|AEH24028.1| endonuclease III [Pyrococcus yayanosii CH1]
Length = 234
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 22/195 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC--GGLAPTKAACIK 143
L+K ++SQ + + + L +PT + A + ++ +R GL +K I
Sbjct: 52 LIKCIISQRNRDEVTDRVAEELFRKYPTINDIANASVEKMQEFLRSLKVGLWRSKGRWIV 111
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ ++ LE G D ++ EL + GIG K VL + + PVDTHV
Sbjct: 112 EV--------SRIILERYDGRVPDTLE-ELMKLPGIGRKCANIVLAYGFGKPAIPVDTHV 162
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG-KLCRNCIKKGGNRQRK 262
+SK +G P A K +L IPKE +N + HG K+CR K
Sbjct: 163 NRVSKRLGLAPLEASPEKVEEYLKVLIPKEEWLYVNHAMVDHGKKVCRPIKPK------- 215
Query: 263 ESAGNLCPLLNYCEK 277
N CP+ N C K
Sbjct: 216 ---CNECPVRNLCPK 227
>gi|352517279|ref|YP_004886596.1| putative endonuclease III [Tetragenococcus halophilus NBRC 12172]
gi|348601386|dbj|BAK94432.1| putative endonuclease III [Tetragenococcus halophilus NBRC 12172]
Length = 231
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
ES L +LS TT+ + K L FPT E + A + I+ IR GL KA
Sbjct: 33 ESNFQLLCAVLLSAQTTDVSVNKVTPQLFEKFPTPEAMSVASLEDIQENIRSIGLYKNKA 92
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
+KN+ + LLE G I + + EL+ G+G KT VL F V
Sbjct: 93 KYLKNMSQMLLEK--------FEG-QIPDNREELTTLPGVGRKTANVVLTNGFNIPAFAV 143
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF 236
DTH+ +++ + +VP A K ++ ++P+++ +
Sbjct: 144 DTHIKRVTRKLHFVPQDASVEKVEQMMSDKLPEDMWY 180
>gi|170756278|ref|YP_001779840.1| endonuclease III [Clostridium botulinum B1 str. Okra]
gi|429243983|ref|ZP_19207465.1| endonuclease III [Clostridium botulinum CFSAN001628]
gi|169121490|gb|ACA45326.1| endonuclease III [Clostridium botulinum B1 str. Okra]
gi|428758903|gb|EKX81294.1| endonuclease III [Clostridium botulinum CFSAN001628]
Length = 213
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 64 KNSVPLDMNEYDEG----EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
KN + + ++ Y + E + + L+ TVLS TT+ + L + T + L
Sbjct: 7 KNVIDILVDTYPDANCELEHRNPFELLIATVLSAQTTDKKVNEVTKELFKEYSTSKDFLK 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ +E I+ GL K+ KNIL E + K G + +L+ G+
Sbjct: 67 LTREELEEKIKKIGLYRNKS---KNILLLCKELEEKF------GSQVPNDFNDLTSLPGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL + VDTHVF +S IG V A++ KT L Q IPKEL ++
Sbjct: 118 GRKTANVVLANAFKVPTIAVDTHVFRVSNRIGLV-DASNVLKTEEQLQQAIPKELWILMH 176
Query: 240 CLLYTHGKLC 249
+L HG+ C
Sbjct: 177 HVLIFHGRRC 186
>gi|435848105|ref|YP_007310355.1| putative endoIII-related endonuclease [Natronococcus occultus SP4]
gi|433674373|gb|AGB38565.1| putative endoIII-related endonuclease [Natronococcus occultus SP4]
Length = 270
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 10/155 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAA-----EQKCIENAIRCGGLAPTKAA 140
L++T+LSQNT++ S A +L + + LAA EQ + I GL K+
Sbjct: 58 LIRTILSQNTSDKASQPAHDALIDRYDDPDRDLAAALADAEQSELAETISSAGLYNQKSE 117
Query: 141 CIKNILKCLL---ESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD- 196
I + +L ES +++R + + ++ L G+GPKT CVL+F +
Sbjct: 118 MIIGAAEEILAEFESAAGF-DDFVREAAPEGVRERLLEIHGVGPKTADCVLLFAGGRGGV 176
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
FPVDTHV I + +G P AD L + +P
Sbjct: 177 FPVDTHVHRIYRRLGVAPPDADHEDVRAVLEREVP 211
>gi|397772834|ref|YP_006540380.1| HhH-GPD family protein [Natrinema sp. J7-2]
gi|448340522|ref|ZP_21529493.1| HhH-GPD family protein [Natrinema gari JCM 14663]
gi|397681927|gb|AFO56304.1| HhH-GPD family protein [Natrinema sp. J7-2]
gi|445629955|gb|ELY83225.1| HhH-GPD family protein [Natrinema gari JCM 14663]
Length = 276
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTF-----PTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + E + +AE+ + I GL K+
Sbjct: 58 LVRTILSQNTSDKASQPAHDALLDRYGGPDVDLAESLASAERSTLAETISGAGLYNQKSE 117
Query: 141 CIKNILKCLLE--SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
+ + + +L +++ ++ L RG+GPKT CVL+F + F
Sbjct: 118 TLIDTAEWVLAEFDSASAFDAFVKDEEPSVVRETLLSVRGVGPKTADCVLLFAGGRGGVF 177
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP-KELKFDLNCLLYTHGKLCR----NC 252
PVDTHV I + +G P AD L + +P + F + + CR C
Sbjct: 178 PVDTHVHRIYRRMGIAPPDADHEAVREVLERDVPAAKCGFGHTATIQFGREYCRARTPAC 237
Query: 253 IKKGGNRQRKESAGNLCPLLNYCEK 277
++ + CP+ + CE+
Sbjct: 238 LED----------PDACPMADVCEQ 252
>gi|448385412|ref|ZP_21563918.1| HhH-GPD family protein [Haloterrigena thermotolerans DSM 11522]
gi|445656907|gb|ELZ09739.1| HhH-GPD family protein [Haloterrigena thermotolerans DSM 11522]
Length = 307
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 115 EHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCL--EYLRGLSIDEIKAE 172
E + AAEQ + I GL K+ I + + +LE G +++ E++
Sbjct: 127 ESLAAAEQSTLAETISGAGLYNQKSETIIDTAEWVLEEFGSAAAFDAFVKDEPPAEVRET 186
Query: 173 LSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
L RG+GPKT CVL+F + FPVDTHV I + +G P AD L + +P
Sbjct: 187 LLGVRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPPDADHEAVREVLERDVP 246
>gi|295425974|ref|ZP_06818648.1| possible deoxyribonuclease [Lactobacillus amylolyticus DSM 11664]
gi|295064290|gb|EFG55224.1| possible deoxyribonuclease [Lactobacillus amylolyticus DSM 11664]
Length = 228
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 89 TVLSQNTTEANSLKAFASLKST---FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
TVL QNT N KA L P + +LA + + NAI+ G K I+N+
Sbjct: 36 TVLIQNTNWKNVAKALKDLYKVSGFLP--QKILALTDEELTNAIKKAGFYTRKVKTIQNL 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K E LE ++ + ++++ EL +GIG +T +LM+ L++ +F VD + +
Sbjct: 94 AKYFQEYS--FDLELMQEMPKEKLRKELLAIKGIGSETADVILMYGLRKGEFVVDNYSYR 151
Query: 206 ISKAIGW 212
+ + +GW
Sbjct: 152 LFECLGW 158
>gi|375084054|ref|ZP_09731064.1| endonuclease III [Thermococcus litoralis DSM 5473]
gi|374741220|gb|EHR77648.1| endonuclease III [Thermococcus litoralis DSM 5473]
Length = 237
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 12/168 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG--LAPTKAACIK 143
L+ ++SQ + + K + L + E + + ++ +R G L TK I
Sbjct: 51 LIHCIISQRMRDEVTYKVWRELFKKYKNIETIANTPIEEMQEFLRKNGVGLWKTKGEWIV 110
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ +LE G G D+I+ EL + GIG K VL + + PVDTHV
Sbjct: 111 RASQIILEEYG--------GKVPDKIE-ELMKLPGIGRKCANIVLAYGFGKQTIPVDTHV 161
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
ISK +G P K +L Q IPK+L +N + HGK +C+
Sbjct: 162 NRISKRLGLAPPKVSPEKVEEYLKQLIPKDLWIYVNHAMVDHGKRICK 209
>gi|261403086|ref|YP_003247310.1| HhH-GPD family protein [Methanocaldococcus vulcanius M7]
gi|261370079|gb|ACX72828.1| HhH-GPD family protein [Methanocaldococcus vulcanius M7]
Length = 230
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 17/198 (8%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWE-HVLAAEQKCIENAIRCGGLAPTK 138
E+ + +V VL+QNT+ N KA +LK+ E +L ++ ++ I+ G K
Sbjct: 34 ETRYEVVVGAVLTQNTSWKNVEKAIRNLKNKDLIDEIKILNIDEDVLKALIKPAGFYNIK 93
Query: 139 AACIKNILKCLLESKGKLCLEYLRG-LSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDF 197
A +KNI K ++E+ K + R + E++ EL +GIGP+T +L++ L ++ F
Sbjct: 94 AKRLKNITKYIVEN-YKTTEDMARANKDVKELRKELLSIKGIGPETADSILLYALDKESF 152
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTHGK-------L 248
+D + I + + ++ +PK+L+ + + L+ H K L
Sbjct: 153 VIDAYTKRIFSRLNIINEKMSYDEIKKLFETNLPKDLQIYKEYHALIVEHAKRVCKKNPL 212
Query: 249 CRNC-IKK----GGNRQR 261
C NC IKK GN +R
Sbjct: 213 CDNCPIKKVYICDGNYKR 230
>gi|431928210|ref|YP_007241244.1| DNA-(apurinic or apyrimidinic site) lyase [Pseudomonas stutzeri
RCH2]
gi|431826497|gb|AGA87614.1| endonuclease III [Pseudomonas stutzeri RCH2]
Length = 212
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + IR GL P+KA +
Sbjct: 33 LIAVILSAQATDVGVNKATAKLYPVANTPEAIYALGYDGLCEYIRTIGLYPSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + +L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILIEKHGG---------QVPDNREDLEALPGVGRKTANVVLNTAFRQFTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P K L + ++ +PKE D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKNVLEVERKLIRFVPKEYLLDAHHWLILHGRYVC---------KA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPQCGS-CRIEDLCEYKHKT 209
>gi|451947518|ref|YP_007468113.1| putative endonuclease III-like protein [Desulfocapsa sulfexigens
DSM 10523]
gi|451906866|gb|AGF78460.1| putative endonuclease III-like protein [Desulfocapsa sulfexigens
DSM 10523]
Length = 218
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKST-FPTWEHVLAAEQKCIENAIRCGGLAPTK 138
E+ L+ +V VL+QNT+ N KA +LK+ + ++L EQ+ + IR G K
Sbjct: 29 ETPLEMMVGAVLTQNTSWGNVEKALGNLKNAGHLSVSNLLEMEQEQLAEYIRPSGYYNIK 88
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A +KN+L+ ++ K + L Y S++E + L + +G+GP+T +L++ ++ F
Sbjct: 89 ARRLKNLLQ-MISDKYEGELTYFLKDSLEESRENLLKVKGVGPETADAILLYAAEKPVFV 147
Query: 199 VDTHVFEI 206
+DT+ +
Sbjct: 148 IDTYTHRV 155
>gi|433638876|ref|YP_007284636.1| putative endoIII-related endonuclease [Halovivax ruber XH-70]
gi|433290680|gb|AGB16503.1| putative endoIII-related endonuclease [Halovivax ruber XH-70]
Length = 296
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 27/173 (15%)
Query: 86 LVKTVLSQNTTEANSLKAFASL------------------------KSTFPTWEHVLAAE 121
LV+T+LSQNT++ S A +L +ST + A+
Sbjct: 66 LVRTILSQNTSDVASQPAHDALIERYGPDGGEADENGHEGATDGETESTSDLAATLADAD 125
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGI 179
++ I I GL K+ I+ + + G Y+R + ++ EL G+
Sbjct: 126 REEIAETISAAGLYNQKSRMIQEAAEWVRTEFGTAPAFDAYVRETAPATVRDELLSVHGV 185
Query: 180 GPKTVACVLMFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
GPKT CVL+F QD +PVDTHV IS+ +G P A L +P
Sbjct: 186 GPKTADCVLLFAGGQDGVYPVDTHVHRISRRLGIAPPEAGHEGVREALETTVP 238
>gi|383785899|ref|YP_005470468.1| DNA-(apurinic or apyrimidinic site) lyase [Fervidobacterium
pennivorans DSM 9078]
gi|383108746|gb|AFG34349.1| endonuclease III [Fervidobacterium pennivorans DSM 9078]
Length = 220
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E +E+ L+ T+LSQ + + N+ + +L S + E + A+ + + + IR GL
Sbjct: 33 EHDEKDPFKVLITTILSQRSRDENTEVSAKNLFSVYENVEQLAQAKPEELYDLIRPSGLY 92
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA I + K +LE G G D ++ EL G+G KT VL Q
Sbjct: 93 KEKAERIIAVSKIILEKYG--------GRVPDNLE-ELLSLPGVGRKTANIVLHVSFGQQ 143
Query: 196 DFPVDTHVFEISKAIGWVPT 215
VDTHV IS +GWV T
Sbjct: 144 ALAVDTHVHRISNRLGWVNT 163
>gi|167044454|gb|ABZ09130.1| putative HhH-GPD superfamily base excision DNA repair protein
[uncultured marine crenarchaeote HF4000_APKG6D9]
Length = 216
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T + + KA +L S + + + A+ K +E I+ G K+ I +
Sbjct: 37 LIGTILSARTKDEATTKAVKALFSKYKNSKQLANAKVKDVEKIIKSIGFFHVKSKRIIEV 96
Query: 146 LKCL-LESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
K + + KGK+ D + L G+G KT CVL++ ++ PVD HV
Sbjct: 97 AKIINTKYKGKVP---------DNLDT-LVELPGVGRKTANCVLVYAFEKPAIPVDIHVH 146
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS +G V T + +T L ++IPK+ D+N +G+ +C+
Sbjct: 147 RISNRLGLVDT-KNPEETEQELMKKIPKKYWIDINDTFVMYGQNICK 192
>gi|418017746|ref|ZP_12657302.1| HhH-GPD superfamily base excision DNA repair protein [Streptococcus
salivarius M18]
gi|345526595|gb|EGX29906.1| HhH-GPD superfamily base excision DNA repair protein [Streptococcus
salivarius M18]
Length = 206
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 89/181 (49%), Gaps = 6/181 (3%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
E + + ++ ++GLV T+L Q TE N+ A A L T E +LA + ++ IR
Sbjct: 19 GEQNWWQSDNKIEGLVSTILIQRITEKNAKLALAGLMDVM-TVEDILALPLEDLQERIRP 77
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
G K+ I+ +L L E G E L + ++++ +L + +GIGP+T +L++
Sbjct: 78 AGFFKQKSQTIRGLLIWLREVGG---FEVLSKIGTEDLRKQLLKLKGIGPETADALLLYL 134
Query: 192 LQQDDFPVDTHVFEISKAIGW--VPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC 249
+ F D + + + +G+ T D + Y ++ + + + +++ ++ HGK
Sbjct: 135 FDRPVFISDEYARRLFRRLGFGNFDTYNDMHAVYGNVLEGLTLKQCQEIHAVIDEHGKAF 194
Query: 250 R 250
R
Sbjct: 195 R 195
>gi|56460900|ref|YP_156181.1| endonuclease III [Idiomarina loihiensis L2TR]
gi|56179910|gb|AAV82632.1| Endonuclease III [Idiomarina loihiensis L2TR]
Length = 211
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 89/220 (40%), Gaps = 24/220 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD N P EYD S L+ +LS T+ KA L PT E +LA
Sbjct: 14 RDNNPNPTTELEYD-----SPFQLLIAVLLSAQATDVGVNKATRKLFPAAPTAETMLALG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
I+ I+ GL +KA K L++ EY G + E +A L G+G
Sbjct: 69 VDGIKEYIKTIGLFNSKAENAYKTCKILVQ-------EY--GGEVPEDRAALEALPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL VDTH+F +S P + + L + +P E K D++
Sbjct: 120 KTANVVLNTAFGWPTIAVDTHIFRVSNRTKLAP-GKNVKEVEEKLIKVVPAEFKVDVHHW 178
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G+ C + + CE KT
Sbjct: 179 LILHGRY--TCI------ARKPRCGS-CVIEDLCEFKEKT 209
>gi|435850481|ref|YP_007312067.1| putative endoIII-related endonuclease [Methanomethylovorans
hollandica DSM 15978]
gi|433661111|gb|AGB48537.1| putative endoIII-related endonuclease [Methanomethylovorans
hollandica DSM 15978]
Length = 208
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLSQ T + ++ L + + + AA+ + +E I+ G K+ I I
Sbjct: 29 LISTVLSQRTRDDVTIPTTEKLFRVYGSPAAMAAADPEDLEKLIKDVGFYRVKSGRIIEI 88
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LL+ EY G D I +L + G+G KT CVL + ++D VDTHV
Sbjct: 89 SRILLQ-------EY-EGKVPDNIN-DLLKLPGVGRKTANCVLTYAFRKDAIAVDTHVHR 139
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS + V T A +T + L + +P+EL +N LL G+ +CR
Sbjct: 140 ISNRLCLVTTNAP-EETEVELERVVPRELWQYVNELLVRFGQDVCR 184
>gi|148378212|ref|YP_001252753.1| endonuclease III [Clostridium botulinum A str. ATCC 3502]
gi|153932971|ref|YP_001382613.1| endonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|153937471|ref|YP_001386165.1| endonuclease III [Clostridium botulinum A str. Hall]
gi|226947430|ref|YP_002802521.1| endonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|387816436|ref|YP_005676780.1| endonuclease III [Clostridium botulinum H04402 065]
gi|421835895|ref|ZP_16270527.1| endonuclease III [Clostridium botulinum CFSAN001627]
gi|148287696|emb|CAL81761.1| endonuclease III [Clostridium botulinum A str. ATCC 3502]
gi|152929015|gb|ABS34515.1| endonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|152933385|gb|ABS38884.1| endonuclease III [Clostridium botulinum A str. Hall]
gi|226844451|gb|ACO87117.1| endonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|322804477|emb|CBZ02027.1| endonuclease III [Clostridium botulinum H04402 065]
gi|409742350|gb|EKN41787.1| endonuclease III [Clostridium botulinum CFSAN001627]
Length = 213
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 64 KNSVPLDMNEYDEG----EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
KN + + ++ Y + E + + L+ TVLS TT+ + L + T + L
Sbjct: 7 KNVIDILVDTYPDANCELEHRNPFELLIATVLSAQTTDKKVNEITKELFKEYSTPKDFLK 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ +E I+ GL K+ KNIL E + K G + +L+ G+
Sbjct: 67 LTREELEEKIKKIGLYRNKS---KNILLLCKELEEKF------GSQVPNDFNDLTSLPGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL + VDTHVF +S IG V A++ KT L Q IPKEL ++
Sbjct: 118 GRKTANVVLANAFKVPTIAVDTHVFRVSNRIGLV-DASNVLKTEEQLQQAIPKELWILMH 176
Query: 240 CLLYTHGKLC 249
+L HG+ C
Sbjct: 177 HVLIFHGRRC 186
>gi|294496431|ref|YP_003542924.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalophilus mahii
DSM 5219]
gi|292667430|gb|ADE37279.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalophilus mahii
DSM 5219]
Length = 206
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 22/214 (10%)
Query: 68 PLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIEN 127
PL +EY E + L+ TVLSQ T + + A L + T ++ A+ + IE
Sbjct: 12 PLYPHEYFSTERDPFY-ILISTVLSQRTRDEVTEVASRRLFDQYSTPVQMVEADVEKIEI 70
Query: 128 AIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACV 187
I+ G KA IK I + L++ EY + + EL + G+G KT CV
Sbjct: 71 LIKDVGFYRVKAGRIKEISQILID-------EYDSQVPASMV--ELLKLPGVGRKTANCV 121
Query: 188 LMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
L + + VDTHV IS +G V T ++T + L +++P ++N L GK
Sbjct: 122 LSYAFLEKAIAVDTHVHRISNRLGLVDTVTP-DQTEIELQKQVPVSYWREVNELFVQFGK 180
Query: 248 -LCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNK 280
+C+ A +C + + C K K
Sbjct: 181 TVCKPL----------SPACEVCAIEDLCAKKEK 204
>gi|339493190|ref|YP_004713483.1| endonuclease III [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338800562|gb|AEJ04394.1| endonuclease III [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 212
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + IR GL P+KA +
Sbjct: 33 LIAVILSAQATDVGVNKATARLFPVANTPEAIYALGYDGLCEYIRTIGLYPSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILIEQHGS---------QVPDTREALEALPGVGRKTANVVLNTAFRQFTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P K L + ++ +PKE D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKNVLEVERKLIRFVPKEYLLDAHHWLILHGRYVC---------KA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPQCGS-CRIEDLCEYKHKT 209
>gi|388582291|gb|EIM22596.1| DNA glycosylase [Wallemia sebi CBS 633.66]
Length = 331
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 84/191 (43%), Gaps = 17/191 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFP---TWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
LV +LS T +A + A +L+ T E VLAA K I++AI G K +
Sbjct: 109 LVSLMLSSQTKDAVTSDAVNNLREQLEGGLTLESVLAATDKQIQDAIAKVGFWRRKTEYL 168
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPVDT 201
K L ++ G +I EL G+GPK L Q+D VD
Sbjct: 169 KKAAVMLRDN--------FEGDVPKDID-ELCSLPGVGPKMGFLALQAAWNQNDGIGVDV 219
Query: 202 HVFEISKAIGW-VPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
HV I+ +GW P +T L+L +PKEL D+N LL G+ C+ G +
Sbjct: 220 HVHRITNRLGWHQPPTKQPEQTRLNLESWLPKELHRDVNKLLVGFGQTI--CLPVGPKCE 277
Query: 261 R-KESAGNLCP 270
K SA +LCP
Sbjct: 278 DCKLSAEDLCP 288
>gi|387878896|ref|YP_006309199.1| Endonuclease III-related protein [Streptococcus parasanguinis
FW213]
gi|386792353|gb|AFJ25388.1| Endonuclease III-related protein [Streptococcus parasanguinis
FW213]
Length = 207
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPT 137
+ E+ L+ LV T+L Q TTE N+ A A L T E +LA + ++ IR G
Sbjct: 25 QSENKLEDLVSTILIQRTTEKNAKLALAGLMDVM-TVEGILALPLEELQERIRPAGFFKQ 83
Query: 138 KAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDF 197
K+ I+ +L L E G E L + ++++ +L +GIGP+T +L++ + F
Sbjct: 84 KSQTIRGLLIWLREVGG---FEVLSKIGTEDLRKQLLELKGIGPETADALLLYLFDRPVF 140
Query: 198 PVDTHVFEISKAIGW--VPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCR 250
D + + + +G+ T D + Y ++ + + + +++ ++ HGK R
Sbjct: 141 ISDEYARRLFRRLGFGNFDTYNDMHAVYGNVLEGLALKQCQEIHAVIDEHGKAFR 195
>gi|403341550|gb|EJY70081.1| Endonuclease III/similar to 8-oxoguanine DNA glycosylase isoform 1b
[Oxytricha trifallax]
Length = 422
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIK 170
FPT E + +K + + ++ G A A K + E GK LE LRG S +E++
Sbjct: 220 FPTIEQMSQVSEKELRD-LKFGYRAKYLVAN----AKMMNEKGGKQWLESLRGKSNEEVR 274
Query: 171 AELSRFRGIGPKTVACVLMFHLQ-QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQR 229
+L GIG K C+ +F L + PVDTHVF+I++ +G+V K +LNQ+
Sbjct: 275 EQLITLNGIGNKVADCIALFSLDCANSIPVDTHVFQIAQKLGYVQGM----KKDANLNQK 330
Query: 230 I 230
+
Sbjct: 331 L 331
>gi|260913861|ref|ZP_05920335.1| endonuclease III [Pasteurella dagmatis ATCC 43325]
gi|260631948|gb|EEX50125.1| endonuclease III [Pasteurella dagmatis ATCC 43325]
Length = 210
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 89/220 (40%), Gaps = 24/220 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD+N P Y S + L+ +LS T+ KA L T E +LA
Sbjct: 14 RDENPHPTTELNYS-----SPFELLIAVILSAQATDKGVNKATDKLFPVANTPEAILALG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
++ I+ GL +KA I + L+E I + +A L G+G
Sbjct: 69 VDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG---------EIPQDRAALEALAGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL Q VDTH+F +S G+ P D K L + +P E K D++
Sbjct: 120 KTANVVLNTAFGQPTIAVDTHIFRVSNRTGFAP-GKDVVKVEEKLLKVVPDEFKVDVHHW 178
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G+ C + + CE KT
Sbjct: 179 LILHGRY--TCI------ARKPRCGS-CIIEDLCEFKEKT 209
>gi|152979399|ref|YP_001345028.1| endonuclease III [Actinobacillus succinogenes 130Z]
gi|150841122|gb|ABR75093.1| endonuclease III [Actinobacillus succinogenes 130Z]
Length = 211
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 88/201 (43%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA L + T + +LA ++ I+ GL +KA
Sbjct: 28 SPFELLIAVILSAQATDKSVNKATKKLFAVANTPQAILALGVDSLKEYIKTIGLYNSKA- 86
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+NI+K + +E G I E + L G+G KT VL VD
Sbjct: 87 --ENIIKTCRD-----LIEKFNG-KIPENRTALESLAGVGRKTANVVLNTAFGYPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F ++ G+ P D K LN+ +P E K D++ L HG+ CI
Sbjct: 139 THIFRVANRTGFAP-GKDVVKVEEKLNKVVPAEFKVDVHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE KT
Sbjct: 190 RKPRCGS-CIIEDLCEYKGKT 209
>gi|218190787|gb|EEC73214.1| hypothetical protein OsI_07297 [Oryza sativa Indica Group]
Length = 1165
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ L L+ G + LE+LR + D+ K L RG+G K+ CV + L Q FPVDT+V
Sbjct: 781 DFLNRLVRDHGSIDLEWLRDIEPDKAKDFLLSIRGLGLKSTECVRLLTLHQMAFPVDTNV 840
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIP 231
I +GWVP LHL + P
Sbjct: 841 ARICVRLGWVPLQPLPESLQLHLLELYP 868
>gi|168182181|ref|ZP_02616845.1| endonuclease III [Clostridium botulinum Bf]
gi|237793528|ref|YP_002861080.1| endonuclease III [Clostridium botulinum Ba4 str. 657]
gi|182674545|gb|EDT86506.1| endonuclease III [Clostridium botulinum Bf]
gi|229261588|gb|ACQ52621.1| endonuclease III [Clostridium botulinum Ba4 str. 657]
Length = 213
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 64 KNSVPLDMNEYDEG----EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
KN + + ++ Y + E + + L+ TVLS TT+ + L + T + L
Sbjct: 7 KNVIDILVDTYPDANCELEHRNPFELLIATVLSAQTTDKKVNEITKELFKEYSTPKDFLK 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ +E I+ GL K+ KNIL E + K G + +L+ G+
Sbjct: 67 LTREELEEKIKKIGLYRNKS---KNILLLCKELEEKF------GSQVPNDFNDLTSLPGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL + VDTHVF +S IG V A++ KT L Q IPKEL ++
Sbjct: 118 GRKTANVVLANAFKVPTIAVDTHVFRVSNRIGLV-DASNVLKTEEQLQQVIPKELWILMH 176
Query: 240 CLLYTHGKLC 249
+L HG+ C
Sbjct: 177 HVLIFHGRRC 186
>gi|239906402|ref|YP_002953143.1| DNA glycosylase [Desulfovibrio magneticus RS-1]
gi|239796268|dbj|BAH75257.1| putative DNA glycosylase [Desulfovibrio magneticus RS-1]
Length = 216
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVL-AAEQKCIENAIRCGGLAPTKAAC 141
L+ V +L+QNT + KA A L+ HVL AA + + IR G KA
Sbjct: 30 LEMAVGAILTQNTNWQGAAKAVAGLREAGLLDPHVLHAASLEAVAERIRPAGHFRVKAGR 89
Query: 142 IKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
+KN++ ++E G L L G +D+ + +L +G+GP+T +L++ L F VD
Sbjct: 90 LKNLMALIVEELGG-DLTALAGYDLDQARDKLLSVKGVGPETADSILLYGLNLPAFVVDA 148
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTHG-KLCR 250
+ I G P A ++ +P++++ + + LL G CR
Sbjct: 149 YTARICFRHGLAPEEAGYDELRELFMDALPEDVRLYNEFHALLVRVGNAWCR 200
>gi|153941507|ref|YP_001389572.1| endonuclease III [Clostridium botulinum F str. Langeland]
gi|384460652|ref|YP_005673247.1| endonuclease III [Clostridium botulinum F str. 230613]
gi|152937403|gb|ABS42901.1| endonuclease III [Clostridium botulinum F str. Langeland]
gi|295317669|gb|ADF98046.1| endonuclease III [Clostridium botulinum F str. 230613]
Length = 213
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 64 KNSVPLDMNEYDEG----EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
KN + + ++ Y + E + + L+ TVLS TT+ + L + T + L
Sbjct: 7 KNVIDILVDTYPDANCELEHRNPFELLIATVLSAQTTDKKVNEITKELFKEYSTPKDFLK 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ +E+ I+ GL K+ KNIL E + K G + +L+ G+
Sbjct: 67 LTREELEDKIKKIGLYRNKS---KNILLLCKELEEKF------GSQVPNDFNDLTSLPGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL + VDTHVF +S IG V A + KT L Q IPKEL ++
Sbjct: 118 GRKTANVVLANAFKVPTIAVDTHVFRVSNRIGLV-DANNVLKTEEQLQQAIPKELWILMH 176
Query: 240 CLLYTHGKLC 249
+L HG+ C
Sbjct: 177 HVLIFHGRRC 186
>gi|85713238|ref|ZP_01044264.1| Endonuclease III [Idiomarina baltica OS145]
gi|85692933|gb|EAQ30905.1| Endonuclease III [Idiomarina baltica OS145]
Length = 211
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 87/220 (39%), Gaps = 24/220 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD N P EY ES L+ +LS T+ KA L PT E +LA
Sbjct: 14 RDNNPNPTTELEY-----ESPFQLLIAVLLSAQATDVGVNKATRKLFPAAPTAETMLALG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
I+ I+ GL +KA K L+E + E + L G+G
Sbjct: 69 VDGIKEYIKTIGLFNSKAENAYKTCKILVEQYDG---------EVPESREALEALPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL VDTH+F +S P + N+ L + +PKE K D++
Sbjct: 120 KTANVVLNTAFGWPTIAVDTHIFRVSNRTKLAP-GKNVNEVEQKLIKVVPKEFKVDVHHW 178
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ C+ RK G+ C + + CE KT
Sbjct: 179 LILHGRY--TCV------ARKPRCGS-CVIEDLCEFKEKT 209
>gi|420239244|ref|ZP_14743581.1| putative endoIII-related endonuclease [Rhizobium sp. CF080]
gi|398081732|gb|EJL72504.1| putative endoIII-related endonuclease [Rhizobium sp. CF080]
Length = 248
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 1/139 (0%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
++K+++S T + SL+A+ L +P W + A IE I A KA +K
Sbjct: 39 MIKSLISSRTKDEVSLRAYERLIRRYPRWSDLAQAPATEIEAVIAKVTFADEKARNLKAA 98
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDFPVDTHVF 204
L + L +L+ + + A L G+GPK A L F L F VDTHV
Sbjct: 99 LGIIAVRNPDFDLSFLKNMPTPQALAWLEALPGVGPKVAASTLNFSTLAMPAFVVDTHVL 158
Query: 205 EISKAIGWVPTAADRNKTY 223
+ G V AD Y
Sbjct: 159 RVLARFGIVGARADIETAY 177
>gi|168177542|ref|ZP_02612206.1| endonuclease III [Clostridium botulinum NCTC 2916]
gi|182670644|gb|EDT82618.1| endonuclease III [Clostridium botulinum NCTC 2916]
Length = 213
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 64 KNSVPLDMNEYDEG----EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
KN + + ++ Y + E + + L+ TVLS TT+ + L + T + L
Sbjct: 7 KNVIDILVDTYPDANCELEHRNPFELLIATVLSAQTTDKKVNEITKELFKEYSTPKDFLK 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ +E I+ GL K+ KNIL E + K G + +L+ G+
Sbjct: 67 LTREELEEKIKKIGLYRNKS---KNILLLCKELEEKF------GSQVPNDFNDLTSLPGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL + VDTHVF +S IG V A++ KT L Q IPKEL ++
Sbjct: 118 GRKTANVVLANAFKVPTIAVDTHVFRVSNRIGLV-GASNVLKTEEQLQQVIPKELWILMH 176
Query: 240 CLLYTHGKLC 249
+L HG+ C
Sbjct: 177 HVLIFHGRRC 186
>gi|333995660|ref|YP_004528273.1| endonuclease III [Treponema azotonutricium ZAS-9]
gi|333736234|gb|AEF82183.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Treponema azotonutricium ZAS-9]
Length = 247
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LS T +A +LK SL P + ++ ++ G TKAA ++ I
Sbjct: 68 LVSTILSLRTKDAVTLKTSKSLLEKAPGPKELIGLGEEKTAKLAYPAGFYRTKAANLQKI 127
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
LL G G ++ A LS G+G KT VL D VD HV
Sbjct: 128 AVILLTQYG--------GKVPADMDALLS-LPGVGRKTANLVLTEAFDMDGICVDIHVHR 178
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS +GWV T +KT L + +PK +N LL +G+ +CR
Sbjct: 179 ISNRMGWVETEVP-DKTEAELREILPKRYWKRINALLVLYGQNVCRPV----------SP 227
Query: 265 AGNLCPLLNYCEK 277
+ CPL +C++
Sbjct: 228 FCSRCPLAKHCKR 240
>gi|431931186|ref|YP_007244232.1| endonuclease III-like protein [Thioflavicoccus mobilis 8321]
gi|431829489|gb|AGA90602.1| putative endonuclease III-like protein [Thioflavicoccus mobilis
8321]
Length = 215
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 10/194 (5%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-TWEHVLAAEQKCIENAIRCGGLAPTK 138
+S + +V VL+QNT +N +A A L P E +LA + + + +AIR G K
Sbjct: 26 DSPFEVMVGAVLTQNTAWSNVERALARLNERIPLAAEAILALDHETLADAIRPAGYFNVK 85
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A ++ +E G L L L ++ L G+GP+T +L++ ++ F
Sbjct: 86 ARRLRAFCHAFVEEGG---LAGLSSLDTKALRERLLAINGVGPETADDMLLYAFERPVFV 142
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
VD + + +G + D ++ Y + + L D C H + R+ +
Sbjct: 143 VDAYTRRLFARLGLL----DGDEGYETIRDAFERALGPDTECFNEYHALIVRHAKEVCRT 198
Query: 259 RQRKESA--GNLCP 270
R R G LCP
Sbjct: 199 RPRCAGCCLGELCP 212
>gi|83590725|ref|YP_430734.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Moorella thermoacetica ATCC 39073]
gi|83573639|gb|ABC20191.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Moorella thermoacetica ATCC 39073]
Length = 233
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS TT+ K L +PT E + AA+ + + I+ GL TKAA +
Sbjct: 55 LVAAILSAQTTDDQVNKVTGELFRRYPTPEVLAAADPEEVAACIKSLGLYRTKAAHLVAA 114
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+ G G D+++ +L R G+G K VL +D VDTHVF
Sbjct: 115 CRTLVREYG--------GRVPDKLE-DLLRLHGVGRKVANVVLSNAFGRDVIAVDTHVFR 165
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
++ +G + A D +T L +P + + + LL HG+ +CR
Sbjct: 166 VANRLG-LARAGDVRETERQLMAALPPGSRGEAHHLLIYHGREVCR 210
>gi|257066254|ref|YP_003152510.1| endonuclease III [Anaerococcus prevotii DSM 20548]
gi|256798134|gb|ACV28789.1| endonuclease III [Anaerococcus prevotii DSM 20548]
Length = 197
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 75/166 (45%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS +T+ K + + T E A+ K IEN IR G+ KA I
Sbjct: 19 LIATILSAQSTDVRVNKVTSVMFKDMNTAEEFAKADIKTIENYIRTVGIYKNKAKNISAT 78
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K LC +Y G +IK EL + G+G KT V VDTHVF
Sbjct: 79 SKI-------LCSDY-NGEVPADIK-ELMKLPGVGRKTANVVASNAFNIPAIAVDTHVFR 129
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
+S +G + A + KT L + IPKE + L THG+ LC+
Sbjct: 130 VSNRLG-LADAKNVEKTEKQLMENIPKERWRKTHHQLITHGRALCK 174
>gi|52424971|ref|YP_088108.1| Nth protein [Mannheimia succiniciproducens MBEL55E]
gi|52307023|gb|AAU37523.1| Nth protein [Mannheimia succiniciproducens MBEL55E]
Length = 211
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 89/220 (40%), Gaps = 24/220 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD N P Y+ S + L+ +LS T+ KA L T E +LA
Sbjct: 14 RDNNPQPTTELTYN-----SPFELLIAVILSAQATDKGVNKATERLFPIANTPEAILALG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
+ ++ I+ GL KA I + L+E + E +A L G+G
Sbjct: 69 VEGLKEYIKTIGLYNAKAENIIKTCRDLIEKHQS---------QVPEDRAALEALAGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL VDTH+F +S G+ P D K LN+ +P E K D++
Sbjct: 120 KTANVVLNTAFGHPTIAVDTHIFRVSNRTGFAP-GKDVVKVEEKLNKVVPNEFKVDVHHW 178
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L G+ CI RK G+ C + + CE +KT
Sbjct: 179 LILLGRY--TCI------ARKPRCGS-CIIEDLCEYKDKT 209
>gi|116747801|ref|YP_844488.1| HhH-GPD family protein [Syntrophobacter fumaroxidans MPOB]
gi|116696865|gb|ABK16053.1| DNA-3-methyladenine glycosylase III [Syntrophobacter fumaroxidans
MPOB]
Length = 222
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 5/176 (2%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKS-TFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
+V +L+QNT+ N +A A+L+ ++E + A + + IR G KA +K
Sbjct: 35 IVGAILTQNTSWKNVARAVANLRDHGLLSFEALCAVPEPLLAELIRSSGYYNQKARKLKA 94
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
+ + E+ G L+ D +++EL R RG+GP+T ++++ + F VDT+
Sbjct: 95 FCRHVCET-GHAGLDGFLAQDTDTLRSELLRIRGVGPETADSIVLYAAHKPSFVVDTYTH 153
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTHGKL-CRNCIKKGG 257
+ GWV + ++ + ++ +L+ LL G L CR + GG
Sbjct: 154 RVFSRHGWVQESPSYDELRGFFMDCLEPDVGLFQELHALLVRTGHLFCRKTPRCGG 209
>gi|387770312|ref|ZP_10126495.1| endonuclease III [Pasteurella bettyae CCUG 2042]
gi|386904674|gb|EIJ69463.1| endonuclease III [Pasteurella bettyae CCUG 2042]
Length = 211
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 80/196 (40%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS T+ KA L S T E +LA ++ I+ GL KA I
Sbjct: 33 LVAVILSAQATDKGVNKATDKLFSVANTPEDILALGVDGLKEYIKTIGLYNAKAENIIKT 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E + E + L G+G KT VL VDTH+F
Sbjct: 93 CRTLIEKHHS---------QVPENREALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S G+ P D + LN+ +P E K D++ L G+ CI RK
Sbjct: 144 VSNRTGFAP-GKDVLEVEEKLNKVVPDEFKMDVHHWLILFGRY--TCI------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE NKT
Sbjct: 195 GS-CLIEDLCEYKNKT 209
>gi|224100671|ref|XP_002311969.1| predicted protein [Populus trichocarpa]
gi|222851789|gb|EEE89336.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 52/101 (51%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E V A I AI+ G+ A I+ L L+ G + LE+LR + + K L
Sbjct: 5 YEAVRCAGVNEISEAIKERGMNKILAERIQEFLNRLVREHGSIDLEWLRDVPPGKAKDYL 64
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVP 214
RG+G K+V CV + L FPVDT+V I+ +GWVP
Sbjct: 65 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP 105
>gi|442318462|ref|YP_007358483.1| endonuclease III [Myxococcus stipitatus DSM 14675]
gi|441486104|gb|AGC42799.1| endonuclease III [Myxococcus stipitatus DSM 14675]
Length = 237
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 98/226 (43%), Gaps = 20/226 (8%)
Query: 47 EFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFAS 106
E + +R M R + S+P E D +S L LV +LS T+ +
Sbjct: 11 ETAAAKRERAVKVMERLEASMPDARIELDY---QSPLQLLVAVMLSAQCTDKRVNMVTPA 67
Query: 107 LKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLES-KGKLCLEYLRGLS 165
L FPT A + +E IR GL KA I K L+E +G++ L+
Sbjct: 68 LFQRFPTARDYAAVQASDVEPFIRTCGLYRAKAKNIVATAKILMEQHQGEVPLQ------ 121
Query: 166 IDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYL 224
+ LS G+G KT A V+ HL D+ FPVDTHV ++ +G+ T D +K
Sbjct: 122 ----RELLSELPGVGRKT-AGVVCIHLGGDNAFPVDTHVKRLAYRLGFT-TQEDPDKVEK 175
Query: 225 HLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCP 270
+ +P E + LL HG+ R C + R A +LCP
Sbjct: 176 DMQAVLPPERWMMGHQLLVWHGR--RTCFARSPECPRCVVA-DLCP 218
>gi|13541635|ref|NP_111323.1| endonuclease III [Thermoplasma volcanium GSS1]
gi|14325034|dbj|BAB59960.1| endonuclease III [Thermoplasma volcanium GSS1]
Length = 215
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLSQ T + + +A +L + T E + +A+ + + I G KA I I
Sbjct: 34 LITTVLSQRTKDETTDQAALALYERYRTIEGLASADVSDVGSIISKVGFWRVKAKKIIMI 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ + + EY G + +L G+G KT + VL L VDTHVF
Sbjct: 94 AQIIRD-------EY--GSKVPASMDQLLSLPGVGVKTASVVLAEGLGIPMIAVDTHVFR 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS IGW ++ +T L Q IPK+L N L GK +CR
Sbjct: 145 ISHRIGW-SSSKTPEQTAQDLMQIIPKDLWIGFNPTLVEFGKAVCR 189
>gi|372270183|ref|ZP_09506231.1| endonuclease III [Marinobacterium stanieri S30]
Length = 211
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 14/178 (7%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
N E E S + L+ +LS T+ + KA L T E +LA ++ I+
Sbjct: 19 NPETELEYNSPFELLIAVLLSAQATDVSVNKATRKLFPVANTPEAMLALGVDGVKEHIKT 78
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL TKA + + L+E L G + + +A L + G+G KT VL
Sbjct: 79 IGLFNTKAENVIKTCRMLIE---------LHGSEVPQDRAALEKLPGVGRKTANVVLNTA 129
Query: 192 LQQDDFPVDTHVFEISKAIGWVP--TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
Q VDTH+F +S G P T D K L + +PK D + L HG+
Sbjct: 130 FGQPTMAVDTHIFRVSNRTGIAPGKTVLDVEKKLL---RHVPKPFLVDAHHWLILHGR 184
>gi|325290084|ref|YP_004266265.1| DNA-(apurinic or apyrimidinic site) lyase [Syntrophobotulus
glycolicus DSM 8271]
gi|324965485|gb|ADY56264.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Syntrophobotulus glycolicus DSM 8271]
Length = 209
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 19/193 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T+ SL + +P+ + ++ Q +EN IR GL KA +NI
Sbjct: 35 LIATILSAQCTDIKVNAVTKSLFADYPSAQEIIKLSQTELENIIRPLGLFHNKA---RNI 91
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L S ++ L+ +G + A L G+G KT +L VDTHVF
Sbjct: 92 L-----STSQILLDRYQG-EVPSDMASLVSLPGVGRKTANVILSNAFNFPALAVDTHVFR 145
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S+ + + ++ L L +IP++L + LL HG+ R C + ++ A
Sbjct: 146 VSRRLD-LTRGKTPHQVELDLTAQIPRDLWSKTHHLLIWHGR--RIC-------KAQKPA 195
Query: 266 GNLCPLLNYCEKS 278
CPLL+ C +
Sbjct: 196 CPSCPLLDLCPSA 208
>gi|145590366|ref|YP_001152368.1| HhH-GPD family protein [Pyrobaculum arsenaticum DSM 13514]
gi|145282134|gb|ABP49716.1| HhH-GPD family protein [Pyrobaculum arsenaticum DSM 13514]
Length = 218
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 9/176 (5%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLA 135
E ++ + LV VLSQNT++ N+ KAF +LK T E + +E I+ G+
Sbjct: 27 EGGNLFETLVAVVLSQNTSDKNAFKAFQNLKKRLGSITPESLRGISLGELEELIKPAGMY 86
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
+A +K + + ++ E L + D + L G+G KT A V++ +L
Sbjct: 87 RQRARYLKALADAFITL--EITPEKLVKMGADAARKLLMSLPGVGRKT-ADVVLANLGLP 143
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
FPVDTH+ I+K G D ++ ++ +++PKE + + L G+ +CR
Sbjct: 144 AFPVDTHITRIAKRWGVGSRYEDISRWFM---EQLPKERYLEFHLKLIQFGRDICR 196
>gi|167630835|ref|YP_001681334.1| endonuclease iii [Heliobacterium modesticaldum Ice1]
gi|167593575|gb|ABZ85323.1| endonuclease iii [Heliobacterium modesticaldum Ice1]
Length = 203
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+L+ T+ + + +L + PT E +L Q+ +E+ I+ GL K I
Sbjct: 18 LIATMLAAQATDKSVNRVTPALFAKAPTPEAMLLLTQEELEDLIKSIGLYRNKGRNILAA 77
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G Y GL + G+G KT VL Q+ VDTHVF
Sbjct: 78 CRILVEKHGGQVPGYREGLE---------KLPGVGRKTANVVLAEAFQEPAIAVDTHVFR 128
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+S +G + A D KT L IP++L + L HG+
Sbjct: 129 VSNRLG-LAQAKDVVKTEQDLMNNIPRDLWAKAHHWLIFHGR 169
>gi|187777203|ref|ZP_02993676.1| hypothetical protein CLOSPO_00749 [Clostridium sporogenes ATCC
15579]
gi|187774131|gb|EDU37933.1| endonuclease III [Clostridium sporogenes ATCC 15579]
Length = 213
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 64 KNSVPLDMNEYDEG----EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
KN + + ++ Y + E + + L+ TVLS TT+ + L + T + L
Sbjct: 7 KNVIDILIDTYPDANCELEHRNPFELLIATVLSAQTTDKKVNEVTKVLFKEYSTPKDFLK 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ +E I+ GL K+ KNIL E + K E + +L+ G+
Sbjct: 67 LTREELEEKIKKIGLYRNKS---KNILLLCKELEEKFESEVPNDFN------DLTSLPGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL + VDTHVF +S IG V A++ KT L Q IPKEL ++
Sbjct: 118 GRKTANVVLANAFKVPTIAVDTHVFRVSNRIGLV-DASNVLKTEEQLQQVIPKELWILMH 176
Query: 240 CLLYTHGKLC 249
+L HG+ C
Sbjct: 177 HVLIFHGRRC 186
>gi|115446213|ref|NP_001046886.1| Os02g0494700 [Oryza sativa Japonica Group]
gi|113536417|dbj|BAF08800.1| Os02g0494700 [Oryza sativa Japonica Group]
Length = 1648
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ L L+ G + LE+LR + D+ K L RG+G K+ CV + L Q FPVDT+V
Sbjct: 1252 DFLNRLVRDHGSIDLEWLRDIEPDKAKGFLLSIRGLGLKSTECVRLLTLHQMAFPVDTNV 1311
Query: 204 FEISKAIGWVP 214
I +GWVP
Sbjct: 1312 ARICVRLGWVP 1322
>gi|222622896|gb|EEE57028.1| hypothetical protein OsJ_06806 [Oryza sativa Japonica Group]
Length = 1615
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ L L+ G + LE+LR + D+ K L RG+G K+ CV + L Q FPVDT+V
Sbjct: 1231 DFLNRLVRDHGSIDLEWLRDIEPDKAKGFLLSIRGLGLKSTECVRLLTLHQMAFPVDTNV 1290
Query: 204 FEISKAIGWVP 214
I +GWVP
Sbjct: 1291 ARICVRLGWVP 1301
>gi|424828159|ref|ZP_18252900.1| endonuclease III [Clostridium sporogenes PA 3679]
gi|365979642|gb|EHN15695.1| endonuclease III [Clostridium sporogenes PA 3679]
Length = 213
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 64 KNSVPLDMNEYDEG----EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
KN + + ++ Y + E + + L+ TVLS TT+ + L + T + L
Sbjct: 7 KNVIDILIDTYPDANCELEHRNPFELLIATVLSAQTTDKKVNEVTKVLFKEYSTPKDFLK 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ +E I+ GL K+ KNIL E + K E + +L+ G+
Sbjct: 67 LTREELEEKIKKIGLYRNKS---KNILLLCKELEEKFESEVPNDFN------DLTSLPGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL + VDTHVF +S IG V A++ KT L Q IPKEL ++
Sbjct: 118 GRKTANVVLANAFKVPTIAVDTHVFRVSNRIGLV-DASNVLKTEEQLQQVIPKELWILMH 176
Query: 240 CLLYTHGKLC 249
+L HG+ C
Sbjct: 177 HVLIFHGRRC 186
>gi|48716531|dbj|BAD23135.1| putative transcriptional activator DEMETER [Oryza sativa Japonica
Group]
Length = 1552
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ L L+ G + LE+LR + D+ K L RG+G K+ CV + L Q FPVDT+V
Sbjct: 1228 DFLNRLVRDHGSIDLEWLRDIEPDKAKGFLLSIRGLGLKSTECVRLLTLHQMAFPVDTNV 1287
Query: 204 FEISKAIGWVP 214
I +GWVP
Sbjct: 1288 ARICVRLGWVP 1298
>gi|327310305|ref|YP_004337202.1| DNA-(apurinic or apyrimidinic site) lyase [Thermoproteus uzoniensis
768-20]
gi|326946784|gb|AEA11890.1| DNA-(apurinic or apyrimidinic site) lyase [Thermoproteus uzoniensis
768-20]
Length = 213
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 98/202 (48%), Gaps = 21/202 (10%)
Query: 82 VLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAPTKA 139
V + LV VL+QNTT+ N+ +A+ +LK+ T + +L+ ++ + IR G+ +A
Sbjct: 27 VFELLVAVVLTQNTTDRNAFRAYYNLKNAVGRITPQALLSLGEERLAELIRPAGMHRVRA 86
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
+ + + L + L + + ++E + L+ G+G KT A V++ +L + FPV
Sbjct: 87 RKLIELSRSL----SDVDLSRIADMDVEEARRFLTSLPGVGEKT-ADVVLANLGKPAFPV 141
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGN 258
DTH+ I++ G + ++ ++ +R+P E +++ L G+ CR + G
Sbjct: 142 DTHITRIARRWGIGKRYGEISRWFM---ERLPPERYLEVHLKLIQFGRDYCRARSPRCGE 198
Query: 259 RQRKESAGNLCPLLNYCEKSNK 280
CP+ + C K
Sbjct: 199 ----------CPVRDLCPWPGK 210
>gi|15673053|ref|NP_267227.1| endonuclease III [Lactococcus lactis subsp. lactis Il1403]
gi|418037871|ref|ZP_12676231.1| DNA-(apurinic or apyrimidinic site) lyase [Lactococcus lactis
subsp. cremoris CNCM I-1631]
gi|12724026|gb|AAK05169.1|AE006340_2 endonuclease III [Lactococcus lactis subsp. lactis Il1403]
gi|354693995|gb|EHE93702.1| DNA-(apurinic or apyrimidinic site) lyase [Lactococcus lactis
subsp. cremoris CNCM I-1631]
Length = 218
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 15/207 (7%)
Query: 74 YDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
+ E E E+ L+ T+LS T+ KA +L +TFP + + A+ + IE IR G
Sbjct: 22 HGELEWETPFQLLIATILSAQATDKGVNKATPALFATFPDAQTMSQAKVEEIEKLIRTIG 81
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L TKA I + L+ G L L L D K L G+G KT VL
Sbjct: 82 LYKTKAKNILRTSQMLVTDFGDL----LPDLPKD--KKVLQTLPGVGRKTANVVLAEAYG 135
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCI 253
VDTHV +SK + VP A + L + IP+E + L G+ +C
Sbjct: 136 IPGIAVDTHVERVSKRLDIVPQKATVLEVEEKLMKLIPQEKWVQAHHHLIFFGRY--HCT 193
Query: 254 KKGGNRQRKESAGNLCPLLNYCEKSNK 280
K K + CP+L+YC+ K
Sbjct: 194 AK------KPKCAD-CPVLDYCKFGKK 213
>gi|403345092|gb|EJY71905.1| Endonuclease III/similar to 8-oxoguanine DNA glycosylase isoform 1b
[Oxytricha trifallax]
Length = 303
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIK 170
FPT E + +K + + ++ G A A K + E GK LE LRG S +E++
Sbjct: 149 FPTIEQMSQVSEKELRD-LKFGYRAKYLVAN----AKMMNEKGGKQWLESLRGKSNEEVR 203
Query: 171 AELSRFRGIGPKTVACVLMFHLQ-QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQR 229
+L GIG K C+ +F L + PVDTHVF+I++ +G+V K +LNQ+
Sbjct: 204 EQLITLNGIGNKVADCIALFSLDCANSIPVDTHVFQIAQKLGYVQGM----KKDANLNQK 259
Query: 230 I 230
+
Sbjct: 260 L 260
>gi|146281590|ref|YP_001171743.1| endonuclease III [Pseudomonas stutzeri A1501]
gi|145569795|gb|ABP78901.1| endonuclease III [Pseudomonas stutzeri A1501]
Length = 212
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + IR GL P+KA +
Sbjct: 33 LIAVILSAQATDVGVNKATAKLFPVANTPEAIYALGYDGLCEYIRTIGLYPSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILIEQHGS---------QVPDNREALEALPGVGRKTANVVLNTAFRQFTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P K L + ++ +PKE D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKNVLEVERKLIRFVPKEYLLDAHHWLILHGRYVC---------KA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPQCGS-CRIEDLCEYKHKT 209
>gi|399156221|ref|ZP_10756288.1| DNA-(apurinic or apyrimidinic site) lyase [SAR324 cluster bacterium
SCGC AAA001-C10]
Length = 211
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + K L S +PT E + A + + IR GLAPTK+ KNI
Sbjct: 33 LISVILSAQATDVSVNKVTPELFSAYPTPEEMFEAGSEKVFAHIRSIGLAPTKS---KNI 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ G+L L + + + +L G+G KT VL VDTH+F
Sbjct: 90 ----AATCGQLV--KLHKGEVPDKRKDLEALPGVGRKTANVVLNTAFGVPVIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
IS G P +T + + Q+ +P + K D + LL HG+ +C R
Sbjct: 144 ISNRTGLAP-----GETVIKVEQKLMSVLPAKWKKDAHHLLILHGRYVC---------RA 189
Query: 261 RKESAGNLCPLLNYCEKSNK 280
RK G+ C + CE +K
Sbjct: 190 RKPDCGH-CVISQECEHPDK 208
>gi|332157727|ref|YP_004423006.1| endonuclease III [Pyrococcus sp. NA2]
gi|331033190|gb|AEC51002.1| endonuclease III [Pyrococcus sp. NA2]
Length = 220
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 18/193 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+K ++SQ + + + L +PT + A + +R K KN
Sbjct: 38 LIKCIISQRNRDEVTDRVSEELFKRYPTIRDIANASIDEMREFLRS-----LKVGLWKNK 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K ++E ++ LE G D+ EL + GIG K VL + PVDTHV+
Sbjct: 93 GKWIVEV-SRILLEKYDGKVPDKFD-ELLKLPGIGRKCANIVLAYGFGIPAIPVDTHVYR 150
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS+ +G P A + L IP+E +N + HGK +CR E
Sbjct: 151 ISRRLGLAPWDASPEEVEERLKSLIPREEWIYVNHAMVDHGKRICRPV----------EP 200
Query: 265 AGNLCPLLNYCEK 277
N CPL + C +
Sbjct: 201 RCNECPLRDLCPR 213
>gi|386019796|ref|YP_005937820.1| endonuclease III [Pseudomonas stutzeri DSM 4166]
gi|327479768|gb|AEA83078.1| endonuclease III [Pseudomonas stutzeri DSM 4166]
Length = 212
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + IR GL P+KA +
Sbjct: 33 LIAVILSAQATDVGVNKATAKLFPVANTPEAIYALGYDGLCEYIRTIGLYPSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILIEKHGS---------QVPDNREALEALPGVGRKTANVVLNTAFRQFTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P K L + ++ +PKE D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKNVLEVERKLIRFVPKEYLLDAHHWLILHGRYVC---------KA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPQCGS-CRIEDLCEYKHKT 209
>gi|429192463|ref|YP_007178141.1| endoIII-related endonuclease [Natronobacterium gregoryi SP2]
gi|448325876|ref|ZP_21515254.1| HhH-GPD family protein [Natronobacterium gregoryi SP2]
gi|429136681|gb|AFZ73692.1| putative endoIII-related endonuclease [Natronobacterium gregoryi
SP2]
gi|445613968|gb|ELY67653.1| HhH-GPD family protein [Natronobacterium gregoryi SP2]
Length = 270
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAA-----EQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L + T + LA EQ + I GL K+
Sbjct: 58 LVRTILSQNTSDKASQPAHDALIERYDTTDADLADTLAAAEQSTLAETISSAGLYNQKSR 117
Query: 141 CIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
+ + ++ G E++ + + ++ L RG+GPKT CVL+F + F
Sbjct: 118 VLITTAEWVVSEFGSATAFDEFVTEKAPETVRETLLEVRGVGPKTADCVLLFAGGRTGVF 177
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
PVDTHV I + +G AD + L + +P
Sbjct: 178 PVDTHVHRIYRRLGIASPDADHEEVRTVLEEVVP 211
>gi|309775704|ref|ZP_07670702.1| endonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916543|gb|EFP62285.1| endonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 215
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E ++ + LV VLS TT+A K +L FPT + + A+ + IE+ IR GL
Sbjct: 20 ELEHKNPFELLVAVVLSAQTTDAAVNKVTPALFEAFPTPQAMAEAQLQDIEDKIRRIGLY 79
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA I+N+ + LL+S + E ++ +L+ G+G KT V
Sbjct: 80 RNKAHSIQNLSRSLLDSFDGVVPESMK---------DLTSLAGVGRKTANVVRSVCFDIP 130
Query: 196 DFPVDTHVFEISKAIG 211
VDTHV ISK +G
Sbjct: 131 SIAVDTHVERISKRLG 146
>gi|336476216|ref|YP_004615357.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosalsum zhilinae
DSM 4017]
gi|335929597|gb|AEH60138.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosalsum zhilinae
DSM 4017]
Length = 203
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLS T + + +A + L F + + + AE IE I+ G K+ +K I
Sbjct: 29 LISTVLSHRTRDEITYRASSRLMDKFRSAQEMAEAEVSEIEELIKDVGFYRVKSRRVKEI 88
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+ Y G + + L G+G KT CVL++ ++ VDTHV
Sbjct: 89 AEILM---------YRYGGEVPDNCELLLELPGVGRKTANCVLLYAFSKETIAVDTHVHR 139
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS +G V ++ ++T L + +P+ D+N L G+ +CR
Sbjct: 140 ISNRLGLVKSSTP-DETEEKLKKILPRSSWKDINELFVQFGQNICR 184
>gi|258545291|ref|ZP_05705525.1| endonuclease III [Cardiobacterium hominis ATCC 15826]
gi|258519504|gb|EEV88363.1| endonuclease III [Cardiobacterium hominis ATCC 15826]
Length = 210
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 25/198 (12%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD N P EY S + L+ +LS T+ KA L T +LA
Sbjct: 14 RDANPQPTTELEY-----TSTFELLIAVILSAQATDKGVNKATRRLFPVANTPAAILALG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
+ +++ I+ GL TKA I + LL+ G ++ +A L R G+G
Sbjct: 69 EDGLKDYIKTIGLYNTKAVNILKTCQILLDEHGG---------AVPADRAALERLPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH----LNQRIPKELKFD 237
KT +L +Q VDTH+F ++ G P KT L L R+P D
Sbjct: 120 KTANVILNTAFRQPVMAVDTHIFRVANRTGIAP-----GKTVLAVEKGLMARVPPAYLLD 174
Query: 238 LNCLLYTHGKLCRNCIKK 255
+ L HG+ CI +
Sbjct: 175 AHHWLILHGRYV--CIAR 190
>gi|452750031|ref|ZP_21949786.1| endonuclease III [Pseudomonas stutzeri NF13]
gi|452006033|gb|EMD98310.1| endonuclease III [Pseudomonas stutzeri NF13]
Length = 212
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + IR GL P+KA +
Sbjct: 33 LIAVILSAQATDVGVNKATARLYPVANTPEAIYALGYDGLCEYIRTIGLYPSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + +L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILIEKHGS---------QVPDNREDLEALPGVGRKTANVVLNTAFRQFTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P K L + ++ +PK+ D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKNVLEVERKLIRFVPKDYLLDAHHWLILHGRYVC---------KA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPLCGS-CRIEDLCEYKHKT 209
>gi|126458694|ref|YP_001054972.1| HhH-GPD family protein [Pyrobaculum calidifontis JCM 11548]
gi|126248415|gb|ABO07506.1| HhH-GPD family protein [Pyrobaculum calidifontis JCM 11548]
Length = 219
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 87 VKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
V VLSQNT++ N+ KA+ LK T E VL + + I+ G+ +A I+
Sbjct: 38 VAVVLSQNTSDRNAFKAYDQLKRRLGEITPEAVLQLSEDELAELIKPAGMYRIRARNIRA 97
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
+ + + K+ E LR + E + L G+G KT A V++ +L FPVDTH+
Sbjct: 98 LADAFI--RHKVTPEKLREMGPVEARKFLLSLPGVGEKT-ADVILVNLGLPAFPVDTHIR 154
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I+K G V + ++ ++ + +P E +++ L G+
Sbjct: 155 RIAKRWGIVGNHGEISRRFM---EAVPPEKYLEVHLKLIQFGR 194
>gi|373494784|ref|ZP_09585383.1| endonuclease III [Eubacterium infirmum F0142]
gi|371967828|gb|EHO85296.1| endonuclease III [Eubacterium infirmum F0142]
Length = 207
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 19/197 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
+V + +V LS TT+ + K L +P + AEQ +E I+ G+ TK+
Sbjct: 28 NVFELIVAVALSAQTTDKSVNKVTPELFKAYPDANALAKAEQSDVEEYIKKIGMYRTKSK 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
I N+ K L+ EY GL A L++ G+G KT VL + VD
Sbjct: 88 NIINMAKSLVA-------EY-DGLVPQNFDA-LTKLSGVGRKTANVVLSVGFGEPHIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
THVF ++ IG + + T L + IPK+ + LL HG+ C N K
Sbjct: 139 THVFRVANRIG-ICKEKNELATEKALMKAIPKDRWSKAHHLLIFHGRQCCNARKPNCEE- 196
Query: 261 RKESAGNLCPLLNYCEK 277
CP+ + C+K
Sbjct: 197 --------CPIESMCKK 205
>gi|406915475|gb|EKD54553.1| hypothetical protein ACD_60C00070G0003 [uncultured bacterium]
Length = 237
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 18/180 (10%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
N E S + L+ +LS T+ + KA +L PT + +L+ + ++N I+
Sbjct: 46 NPTTELIYHSAFELLIAVMLSAQATDISVNKATPALFRMAPTPKKMLSLGEAKLKNYIKT 105
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL TK KNILK ++ LE +G ++ +A L G+G KT +L +
Sbjct: 106 IGLYNTKT---KNILKTC-----QILLEQHQG-NVPHTRAALEALPGVGRKTANVILNTY 156
Query: 192 LQQDDFPVDTHVFEISKAIGWV----PTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ VDTH+F +++ IG P A ++ L IP+E + + + L HG+
Sbjct: 157 FGESTIAVDTHIFRVAQRIGLAKGKTPLAIEK-----QLVATIPREFRHNAHHWLILHGR 211
>gi|384251193|gb|EIE24671.1| hypothetical protein COCSUDRAFT_62092 [Coccomyxa subellipsoidea
C-169]
Length = 1568
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 23/133 (17%)
Query: 158 LEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAA 217
LE+LR ++ D+ + L G+G K+VACV++ L + DFPVDT+V I +GW+P A
Sbjct: 722 LEWLRDVAEDDARQYLMGVMGLGRKSVACVMLLALCKHDFPVDTNVGRICARLGWIPLDA 781
Query: 218 DRN-----------KTYLHLNQRI---PKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKE 263
+ + + +L+ R+ E ++L+ + T GK+ C KK N +
Sbjct: 782 EEALEDLDRYAPEPEVHKYLHSRLMHFDTETLYELHYQMITLGKVF--CSKKDPNCRA-- 837
Query: 264 SAGNLCPLLNYCE 276
CPL CE
Sbjct: 838 -----CPLRPQCE 845
>gi|392420198|ref|YP_006456802.1| endonuclease III [Pseudomonas stutzeri CCUG 29243]
gi|390982386|gb|AFM32379.1| endonuclease III [Pseudomonas stutzeri CCUG 29243]
Length = 212
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + IR GL P+KA +
Sbjct: 33 LIAVILSAQATDVGVNKATARLYPVANTPEAIYALGYDGLCEYIRTIGLYPSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + +L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILIEKHGG---------QVPDNREDLEALPGVGRKTANVVLNTAFRQFTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P K L + ++ +PK+ D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKNVLEVERKLIRFVPKDYLLDAHHWLILHGRYVC---------KA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPLCGS-CRIEDLCEYRHKT 209
>gi|418293720|ref|ZP_12905626.1| endonuclease III [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379065109|gb|EHY77852.1| endonuclease III [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 212
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 83/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + IR GL P+KA +
Sbjct: 33 LIAVILSAQATDVGVNKATARLYPVANTPEAIYALGYDGLCEYIRTIGLYPSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILIEKHGS---------QVPDNREALEALPGVGRKTANVVLNTAFRQFTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P K L + ++ +PK+ D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKNVLEVERKLIRFVPKDYLLDAHHWLILHGRYVC---------KA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPQCGS-CRIEDLCEYKHKT 209
>gi|51246268|ref|YP_066152.1| exodeoxyribonuclease (ExoA) [Desulfotalea psychrophila LSv54]
gi|50877305|emb|CAG37145.1| probable exodeoxyribonuclease (ExoA) [Desulfotalea psychrophila
LSv54]
Length = 480
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 86 LVKTVLS----QNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAAC 141
LV T+LS TT A+S + FA ++ E QK I G KA
Sbjct: 38 LVATILSARTKDETTAASSKRLFARAQTAEELTELSEEELQKLIYPV----GFYKNKAGY 93
Query: 142 IKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
+K + + L E KG + E EL R G+G KT VL ++ VDT
Sbjct: 94 LKKLPEALKEFKG----------VVPETMTELLRLPGVGRKTANLVLSIAFKKPAICVDT 143
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
HV I G+V TA KT + L +++P+E +N LL + G+ +CR
Sbjct: 144 HVHRIMNIWGYVETATPL-KTEMALREKLPEEFWIPVNSLLVSLGQSICR 192
>gi|195999308|ref|XP_002109522.1| hypothetical protein TRIADDRAFT_21050 [Trichoplax adhaerens]
gi|190587646|gb|EDV27688.1| hypothetical protein TRIADDRAFT_21050 [Trichoplax adhaerens]
Length = 292
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 21/181 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T + + A LK+ T ++V+A K + I G K IK
Sbjct: 112 LISLMLSSQTKDQITAAAMHRLKNHGLTMDNVMATSDKQLGELIFPVGFWQRKVQYIKRT 171
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD-DFPVDTHVF 204
L+E K ++DE+KA GIGPK +++ VDTHV
Sbjct: 172 TAMLIEKYNKDIPP-----TLDELKA----LPGIGPKMAHLIMLSAWNSVVGIGVDTHVH 222
Query: 205 EISKAIGWV--PTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCIK 254
IS + WV PT D KT + L + +P+ ++NCL+ G+ LC NC+
Sbjct: 223 RISNRLKWVKKPT-TDPEKTRIALEEWLPRNEWREINCLMVGFGQTICLPINPLCDNCLN 281
Query: 255 K 255
K
Sbjct: 282 K 282
>gi|424780567|ref|ZP_18207440.1| Endonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422842969|gb|EKU27416.1| Endonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 218
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 10/171 (5%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
E+ L+ +LS TT+ KA SL +++PT E + A + + + I+ GL KA
Sbjct: 28 ETTFQLLIAVILSAQTTDVAVNKATPSLFASYPTPEKLANASIEDVISKIKTIGLYRNKA 87
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
KNI+ C KL E+ G + + +L G+G KT VL F V
Sbjct: 88 ---KNIIAC----SQKLVEEF--GGKVPADRKQLMSLPGVGRKTANVVLSVAFNIPAFAV 138
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LC 249
DTH+ I+K + VP A ++ + +PKE L+ L G+ LC
Sbjct: 139 DTHIQRIAKRLQIVPLDASVDEVEKTITSIMPKETWNHLHHQLIYFGRYLC 189
>gi|37521390|ref|NP_924767.1| endonuclease III [Gloeobacter violaceus PCC 7421]
gi|35212387|dbj|BAC89762.1| endonuclease III [Gloeobacter violaceus PCC 7421]
Length = 220
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV TV+SQ T E + + + +P + AA++K + + K + +
Sbjct: 38 LVSTVISQRTREEQTTAVSQRVFARYPDMASLAAADEKELLVLLAGSEYREAKGPRLIAM 97
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
LLE G G D+I A L+ GIG KT CVL++ ++ VDTH+ +
Sbjct: 98 ATILLEKYG--------GRVPDDIDALLA-LPGIGRKTANCVLIYAFNREAICVDTHMHK 148
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I+ +GWV T +T L +P++L N L HG+
Sbjct: 149 IANRLGWVTTKTP-EQTEKALEVVMPRDLWAGSNRLFLQHGR 189
>gi|392412414|ref|YP_006449021.1| putative endoIII-related endonuclease [Desulfomonile tiedjei DSM
6799]
gi|390625550|gb|AFM26757.1| putative endoIII-related endonuclease [Desulfomonile tiedjei DSM
6799]
Length = 222
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 11/169 (6%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
D LV TVLS T + + A L + T E + ++ IE I G TKA +
Sbjct: 40 FDVLVSTVLSLRTKDDVTRVASRRLLAVASTPEALADLPEEEIEKLIFPVGFYRTKARNL 99
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ + + LL+ G G D++ EL +G+G KT V+ Q VDTH
Sbjct: 100 RQLARDLLQKYG--------GKVPDDLD-ELLTIKGVGRKTANLVITLGFGQQGICVDTH 150
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
V +S +G+V T +T + L ++P E + N LL T G+ +CR
Sbjct: 151 VHRVSNRLGYVSTKTP-EQTEMALRAKLPAEYWIEYNDLLVTWGQNICR 198
>gi|343519836|ref|ZP_08756811.1| endonuclease III [Haemophilus pittmaniae HK 85]
gi|343392261|gb|EGV04831.1| endonuclease III [Haemophilus pittmaniae HK 85]
Length = 211
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 89/220 (40%), Gaps = 24/220 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD+N P +Y+ S + L+ +LS T+ KA A L T E + A
Sbjct: 14 RDQNPHPTTELQYN-----SPFELLIAVILSAQATDKGVNKATAKLFPVANTPEAIWALG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
++ I+ GL KA I + L++ + E +A L G+G
Sbjct: 69 VDGLKEYIKTIGLFNAKAENIIKTCRDLIDKHQS---------QVPEDRAALEALAGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL VDTH+F + + P D K LN+ +P E K D++
Sbjct: 120 KTANVVLNTAFGHPTIAVDTHIFRVCNRTQFAP-GKDVVKVEEKLNKVVPAEFKVDVHHW 178
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G+ C + + CE +KT
Sbjct: 179 LILHGRY--TCI------ARKPHCGS-CIIEDLCEYKDKT 209
>gi|162447100|ref|YP_001620232.1| endonuclease III [Acholeplasma laidlawii PG-8A]
gi|161985207|gb|ABX80856.1| endonuclease III [Acholeplasma laidlawii PG-8A]
Length = 214
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 11/173 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
+V VLS TT+ K L +PT ++ A+ + + I+ GL TK+ I +
Sbjct: 33 IVAVVLSAQTTDIAVNKVTKDLFRKYPTPNDLMHADVDDVMDTIKTIGLYKTKSKNIIGL 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+E GL E + +L G+G KT VL VDTH+
Sbjct: 93 AKRLVEDYD--------GLVPSE-RKDLESLPGVGRKTANVVLSNAFGIPALAVDTHILR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
ISK +G D + + LN++ PKEL L+ L G+ +CI + N
Sbjct: 144 ISKRLGLADETDDVLEVEMKLNKQFPKELWHKLHHQLIFFGRY--HCIARKPN 194
>gi|312899629|ref|ZP_07758955.1| endonuclease III [Enterococcus faecalis TX0470]
gi|311293308|gb|EFQ71864.1| endonuclease III [Enterococcus faecalis TX0470]
Length = 215
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 18/193 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA L + FPT E + AA + I + I+ GL KA KNI
Sbjct: 34 LIAVILSAQATDVSVNKATPGLFAAFPTPEALAAAPVEEIIDKIKTIGLYRNKA---KNI 90
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
C + LE G + + + EL G+G KT V+ + F VDTHV
Sbjct: 91 KAC-----AQQLLERFNG-EVPQTRDELVSLPGVGRKTANVVMGDAFGEPAFAVDTHVER 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+SK + A+ + L +++PKEL + + G+ +C+ + +
Sbjct: 145 VSKRLRICKLNANVTEVEQTLMRKVPKELWVKTHHTMIFFGRY--HCLARAPKCEA---- 198
Query: 266 GNLCPLLNYCEKS 278
CPLL C++
Sbjct: 199 ---CPLLYMCQEG 208
>gi|294944113|ref|XP_002784093.1| endonuclease III, putative [Perkinsus marinus ATCC 50983]
gi|239897127|gb|EER15889.1| endonuclease III, putative [Perkinsus marinus ATCC 50983]
Length = 292
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 16/180 (8%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-----TWEHVLAAEQKCIENAIRCG 132
EE+ L+ +LS T + + KA +L S F T ++ ++K ++ IR
Sbjct: 13 EEDRCFQLLIAVMLSSQTKDQENAKAMHNLHSHFKGNGGLTRANLAGMDEKDLDAQIRGV 72
Query: 133 GLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL-MFH 191
G TK +N++K + E G D ++ LS G+GPK V+ + H
Sbjct: 73 GFHNTKT---RNLIKV-----ANILKEQFNGKVPDSMEDLLS-LPGVGPKMAVLVMEIGH 123
Query: 192 LQQD-DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCR 250
+D VDTHV I+ +GW A T L R+P E+ D+N LL G++ +
Sbjct: 124 GHRDAGICVDTHVHRIAAMLGWTKNAKTPEATRQQLEARLPLEVWPDMNLLLVGLGQMVQ 183
>gi|346314278|ref|ZP_08855799.1| endonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|345906636|gb|EGX76360.1| endonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
Length = 215
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E + + LV VLS TT+A K +L F T + + A+ + IE+ IR GL
Sbjct: 20 ELEHRNAFELLVAVVLSAQTTDAAVNKVTPALFEAFGTPQAMAEADIRDIEDKIRRIGLY 79
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA I+N+ + LLES + E ++ EL+ G+G KT V
Sbjct: 80 RNKARSIQNLSRSLLESFDGVVPESMK---------ELTSLAGVGRKTANVVRSVCFDIP 130
Query: 196 DFPVDTHVFEISKAIG 211
VDTHV ISK +G
Sbjct: 131 SIAVDTHVERISKRLG 146
>gi|242077266|ref|XP_002448569.1| hypothetical protein SORBIDRAFT_06g029335 [Sorghum bicolor]
gi|241939752|gb|EES12897.1| hypothetical protein SORBIDRAFT_06g029335 [Sorghum bicolor]
Length = 901
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESK-GKLCLEYLRGLSIDEIKAE 172
WE VL A + I G + I+ +L + +++ G L++LR +S ++ K
Sbjct: 412 WESVLNAPFSEVAKCIAVRGQHNILSVRIRELLDHVQKAQDGSFDLDWLRFISHEKAKKI 471
Query: 173 LSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLN----- 227
L G G K+V C+ + L+ FPVD +V I +GWV + +N
Sbjct: 472 LLSIHGFGVKSVDCICLLSLRHRAFPVDVNVARIVTRLGWVKLQPLNGADFHLINLYPLL 531
Query: 228 ---QR--------IPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
QR I KE ++L+CL+ T GK+ C K+ N
Sbjct: 532 DDVQRYLWPRLCTIDKEKLYELHCLMITFGKVV--CTKQNPN 571
>gi|418017971|ref|ZP_12657527.1| endonuclease III [Streptococcus salivarius M18]
gi|345526820|gb|EGX30131.1| endonuclease III [Streptococcus salivarius M18]
Length = 214
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 18/210 (8%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
N + E E E+ LV +LS TT+ K L + +P E + +A +E +R
Sbjct: 20 NAHGELEWETPFQLLVAVILSAQTTDKAVNKITPGLWARYPEIEDLASANLDDVEMCLRT 79
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL KA KNI+K ++ L G + + EL G+G KT VL
Sbjct: 80 IGLYKNKA---KNIIKT-----ARVVLMNFDG-QVPKTHKELESLPGVGRKTANVVLAEV 130
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
VDTHV +SK + VP A + L ++IPK + + G+ +
Sbjct: 131 YGIPSIAVDTHVSRVSKRLNIVPEDASVEEIEAELMKKIPKRDWIISHHRMIFFGRY--H 188
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K Q CPL +YC+ +T
Sbjct: 189 CLAKNPKCQT-------CPLQSYCKYYKET 211
>gi|374673082|dbj|BAL50973.1| endonuclease III [Lactococcus lactis subsp. lactis IO-1]
Length = 218
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 88/207 (42%), Gaps = 15/207 (7%)
Query: 74 YDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
+ E E E+ L+ T+LS T+ KA +L + FP + + A + IE IR G
Sbjct: 22 HGELEWETPFQLLIATILSAQATDKGVNKATPALFAAFPDAQTMSQANVEEIEKLIRTIG 81
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L TKA I + L+ G L L L D K L G+G KT VL
Sbjct: 82 LYKTKAKNILRTSQMLVTDFGDL----LPDLPKD--KKVLQTLPGVGRKTANVVLAEAYG 135
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCI 253
VDTHV +SK + VP A + L Q IP+E + L G+ +C
Sbjct: 136 IPGIAVDTHVERVSKRLDIVPQKATVLEVEEKLMQLIPEEKWVQAHHHLIFFGRY--HCT 193
Query: 254 KKGGNRQRKESAGNLCPLLNYCEKSNK 280
K K + CP+L+YC+ K
Sbjct: 194 AK------KPKCAD-CPVLDYCKFGKK 213
>gi|149378176|ref|ZP_01895893.1| endonuclease III [Marinobacter algicola DG893]
gi|149357538|gb|EDM46043.1| endonuclease III [Marinobacter algicola DG893]
Length = 213
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 18/166 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E++LA ++ I+ GL +KA +
Sbjct: 33 LIAVILSAQATDVGVNKATAKLYPVANTPENILALGVDGLKEYIKTIGLFNSKAENVIKT 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + +L G+G KT VL Q VDTH+F
Sbjct: 93 CRALIEKHGG---------EVPDNREDLEALPGVGRKTANVVLNTAFGQPAMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK 247
+S G P K L + +R +PKE D + L HG+
Sbjct: 144 VSNRTGIAP-----GKNVLDVEKRLMRLVPKEFLLDAHHWLILHGR 184
>gi|332289784|ref|YP_004420636.1| endonuclease III [Gallibacterium anatis UMN179]
gi|330432680|gb|AEC17739.1| endonuclease III [Gallibacterium anatis UMN179]
Length = 211
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 93/220 (42%), Gaps = 24/220 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD N P +Y SV + L+ +LS T+ KA A L T + +L
Sbjct: 14 RDANPHPTTELKY-----HSVFELLIAVILSAQATDVGVNKATAKLFPIANTPQAILDLG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
++N I+ GL +KA +NI+K ++ +E G + E + L G+G
Sbjct: 69 VDGLKNYIKTIGLYNSKA---ENIIKTC-----RVLIEKYNG-EVPESREALESLPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL VDTH+F ++ G+ P D L + +P E K D++
Sbjct: 120 KTANVVLNTAFGWPTIAVDTHIFRVANRTGFAP-GKDVLAVEKKLLKVVPDEFKVDVHHW 178
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G C + + CE +KT
Sbjct: 179 LILHGRY--TCI------ARKPRCGA-CLIEDLCEFKDKT 209
>gi|409393596|ref|ZP_11244903.1| endonuclease III [Pseudomonas sp. Chol1]
gi|409395267|ref|ZP_11246351.1| endonuclease III [Pseudomonas sp. Chol1]
gi|409120069|gb|EKM96434.1| endonuclease III [Pseudomonas sp. Chol1]
gi|409121929|gb|EKM97990.1| endonuclease III [Pseudomonas sp. Chol1]
Length = 212
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + I+ GL P+KA +
Sbjct: 33 LIAVILSAQATDVGVNKATARLFPVANTPEAIYALGYDGLCEYIKTIGLYPSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + +L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILVEKHGS---------QVPDNREDLEALPGVGRKTANVVLNTAFRQFTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P K L + ++ +PKE D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKNVLEVERKLIKFVPKEYLLDAHHWLILHGRYVC---------KA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPQCGS-CRIEDLCEYKHKT 209
>gi|182680010|ref|YP_001834156.1| endonuclease III [Beijerinckia indica subsp. indica ATCC 9039]
gi|182635893|gb|ACB96667.1| endonuclease III [Beijerinckia indica subsp. indica ATCC 9039]
Length = 252
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 72 NEYDEGEEESVLDG--LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
+ + EGE SV D L+ VLS T+A KA +L + + E +LA + + + I
Sbjct: 59 DPHPEGELYSVNDFTFLIAVVLSAQATDAGVNKATKALFAIADSPEKMLALGEDKLRDMI 118
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
+ GL KA I + L+E+ G + + L G+G KT VL
Sbjct: 119 KTIGLYQAKAKNIMALCANLIENYGG---------QVPHDREALQSLAGVGRKTANVVLN 169
Query: 190 FHLQQDDFPVDTHVFEISK----AIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTH 245
+ VDTH+F +S AIG P A ++ L + +P E K + L H
Sbjct: 170 IAFGEPTIAVDTHIFRVSNRIPLAIGKTPLAVEQG-----LEKIVPPEYKLHAHVWLILH 224
Query: 246 GK 247
G+
Sbjct: 225 GR 226
>gi|383788949|ref|YP_005473518.1| putative DNA glycosylase/AP lyase [Caldisericum exile AZM16c01]
gi|381364586|dbj|BAL81415.1| putative DNA glycosylase/AP lyase [Caldisericum exile AZM16c01]
Length = 218
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T + + +A L T E ++ +K IE I G KA IK +
Sbjct: 39 LIGTILSLRTKDETTEEAANRLFEVVKTPEDLIKLSEKDIEKLIYPVGFYKRKAKQIKEV 98
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+E G ++++ EL + +G+G KT V+ VDTHV
Sbjct: 99 AKTLIEK--------YDGRVPNDLE-ELLKLKGVGRKTANLVITEAFDDYGICVDTHVHR 149
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNC 252
IS +GWV T + +T + L + +PK+ +N +L T G+ LC C
Sbjct: 150 ISNRLGWVKT-KNPEQTEMELRKILPKKYWKTINPILVTFGQNICKPISPLCSKC 203
>gi|292492759|ref|YP_003528198.1| endonuclease III [Nitrosococcus halophilus Nc4]
gi|291581354|gb|ADE15811.1| endonuclease III [Nitrosococcus halophilus Nc4]
Length = 223
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS T+ KA A L T + +L ++ ++ I+ GL +KA KNI
Sbjct: 34 LVAVILSAQATDKGVNKATAKLFPVANTPQAILDLGEEGLKGYIKTIGLFNSKA---KNI 90
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L+ L LE+ G + +A L G+G KT +L Q VDTH+F
Sbjct: 91 LQTC-----HLLLEWHDG-RVPNDRAALEALPGVGRKTANVMLNTAFGQPVIAVDTHIFR 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL--------CRNCI 253
++ IG P R + L + IP E K D + L HG+ C++C+
Sbjct: 145 VANRIGLAPGKTPRQVEDI-LTRVIPDEFKHDAHHWLILHGRYVCTARNPRCQDCL 199
>gi|402836848|ref|ZP_10885379.1| endonuclease III [Mogibacterium sp. CM50]
gi|402269864|gb|EJU19133.1| endonuclease III [Mogibacterium sp. CM50]
Length = 218
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 10/170 (5%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
+S+ L+ VLS TT+A+ L ST+ + AA+ +E+ I+ GL KA
Sbjct: 37 DSIFHLLLAVVLSAQTTDASVNTVTPELFSTYHEPADLSAADINDVEDIIKKLGLYKNKA 96
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
+ I K L C EY + D EL + G+G KT VL + V
Sbjct: 97 KNLVGIGKLL-------CSEYDGVVPQD--FTELQKLPGVGRKTANVVLSVGFGEQHIAV 147
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC 249
DTHVF ++ IG V D KT L + IPK ++ + HG+ C
Sbjct: 148 DTHVFRVTNRIGLV-DEDDVLKTERSLMEIIPKHRWSHMHHVFIFHGRRC 196
>gi|387784226|ref|YP_006070309.1| putative DNA repair endonuclease [Streptococcus salivarius JIM8777]
gi|338745108|emb|CCB95474.1| putative DNA repair endonuclease [Streptococcus salivarius JIM8777]
Length = 207
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
++ LV T+L Q TTE N+ A A L T E +LA + ++ IR G K+ I
Sbjct: 30 IEDLVSTILIQRTTEKNAKLALAGLMDVM-TVEEILALPLEELQERIRPAGFFKQKSQTI 88
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ +L L E G E L + +E++ +L +GIGP+T +L++ + F D +
Sbjct: 89 RGLLIWLREVGG---FEVLSKIGTEELRKQLLELKGIGPETADALLLYLFDRPVFISDEY 145
Query: 203 VFEISKAIGW 212
+ + +G+
Sbjct: 146 ARRLFRRLGF 155
>gi|228477369|ref|ZP_04062005.1| endonuclease III domain protein [Streptococcus salivarius SK126]
gi|228250804|gb|EEK09992.1| endonuclease III domain protein [Streptococcus salivarius SK126]
Length = 207
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
++ LV T+L Q TTE N+ A A L T E +LA + ++ IR G K+ I
Sbjct: 30 IEDLVSTILIQRTTEKNAKLALAGLMDVM-TVEEILALPLEELQERIRPAGFFKQKSQTI 88
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ +L L E G E L + +E++ +L +GIGP+T +L++ + F D +
Sbjct: 89 RGLLIWLREVGG---FEVLSKIGTEELRKQLLELKGIGPETADALLLYLFDRPVFISDEY 145
Query: 203 VFEISKAIGW 212
+ + +G+
Sbjct: 146 ARRLFRRLGF 155
>gi|386867584|ref|YP_006280578.1| EndoIII-related endonuclease [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|385701667|gb|AFI63615.1| Putative EndoIII-related endonuclease [Bifidobacterium animalis
subsp. animalis ATCC 25527]
Length = 247
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 79/199 (39%), Gaps = 24/199 (12%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LS TT+ L T+PT E + A + +E+ IR G KA I +
Sbjct: 40 LVATILSAQTTDKRVNSITPELFDTYPTAEALADARLEDVESIIRPLGFYHVKAEHIIAV 99
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ ++E G + + EL+ G+G KT VL FPVDTHV
Sbjct: 100 ARQIVERFGG---------EVPQTMEELTSLPGVGRKTANVVLGNAFHVPGFPVDTHVIR 150
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRI----PKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
++ + W N T + Q I P+ DL+ L G+ +C +
Sbjct: 151 VTGRLHWRDDWMKANTTPERIEQEITGCFPESEWTDLSHRLIIFGRNICTS--------- 201
Query: 261 RKESAGNLCPLLNYCEKSN 279
+ CPLL C +
Sbjct: 202 -RSPECETCPLLPTCPSAG 219
>gi|315425726|dbj|BAJ47382.1| endonuclease III [Candidatus Caldiarchaeum subterraneum]
gi|343484521|dbj|BAJ50175.1| endonuclease III [Candidatus Caldiarchaeum subterraneum]
Length = 217
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 30/196 (15%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T + + +A+ +L + F + +A+ + + I+ G KA IK +
Sbjct: 35 LVGAVLSHRTRDEKTDEAYHNLFTWFNDPRDIASADVRTVARLIKPVGFYRQKAKRIKQL 94
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K + GKL G + + +AEL + G+GPK+ VL + + VDTHV
Sbjct: 95 AKIVY---GKL------GGRVPDNRAELLKLPGVGPKSADIVLSIAFNRPEIAVDTHVET 145
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRI-----PKELKFDLNCLLYTHGK-LCRNCIKKGGNR 259
++K +G AD Y + + + P +++ +N L G+ +CR
Sbjct: 146 VAKRLG----IADGKAGYEEVKKALTTLSKPDDIRL-INHLFVKFGREICR--------- 191
Query: 260 QRKESAGNLCPLLNYC 275
R +LCP+ YC
Sbjct: 192 -RPRPRCSLCPITEYC 206
>gi|359300236|ref|ZP_09186075.1| endonuclease III [Haemophilus [parainfluenzae] CCUG 13788]
Length = 211
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 90/222 (40%), Gaps = 22/222 (9%)
Query: 60 MTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
+TR +N P E + + + L+ +LS T+ KA L T E +LA
Sbjct: 10 LTRLRNENPHPTTELNFS---TPFELLIAVILSAQATDKGVNKATDKLFPVANTPEAILA 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ I+ GL +KA I + L+E + E + L G+
Sbjct: 67 LGVDGLKEYIKTIGLFNSKAENIIKTCRDLVEKHHS---------QVPENREALEALAGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL VDTH+F ++ G+ P D K LN+ +P E K D++
Sbjct: 118 GRKTANVVLNTAFGHPTIAVDTHIFRVANRTGFAP-GKDVVKVEEKLNKVVPSEFKVDVH 176
Query: 240 CLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G+ C + + CE KT
Sbjct: 177 HWLILHGRY--TCI------ARKPRCGS-CIIEDLCEYKEKT 209
>gi|347527061|ref|YP_004833808.1| putative endonuclease III [Sphingobium sp. SYK-6]
gi|345135742|dbj|BAK65351.1| putative endonuclease III [Sphingobium sp. SYK-6]
Length = 222
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 22/196 (11%)
Query: 60 MTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
+R + P E D G + +L V VLS T+A KA L T T ++A
Sbjct: 15 FSRLAEANPAPRTELDYGNDYQLL---VAVVLSAQATDAGVNKATRRLFETVKTPAQMVA 71
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
+ +++ IR GL TKA + + + L+ + + + L+ G+
Sbjct: 72 LGEDGLKHHIRTIGLFNTKAKNVIALSEALIANHDG---------EVPRDRDVLTSLPGV 122
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH----LNQRIPKELK 235
G KT V+ ++ F VDTH+F ++ +G P KT L L +R+P+ +
Sbjct: 123 GRKTANVVMNTAFGEETFAVDTHIFRVANRMGLAP-----GKTVLAVEKGLEKRVPQPFR 177
Query: 236 FDLNCLLYTHGK-LCR 250
D + L HG+ +C+
Sbjct: 178 RDAHHWLILHGRYICK 193
>gi|381206051|ref|ZP_09913122.1| DNA-(apurinic or apyrimidinic site) lyase [SAR324 cluster bacterium
JCVI-SC AAA005]
Length = 214
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 90/209 (43%), Gaps = 27/209 (12%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E + + + L+ +LS TT+A K SL +PT + + + + I+ GLA
Sbjct: 23 ELQHANTFELLIAIILSAQTTDAAVNKVTPSLFGNYPTPQKLAQTTPEKVLTHIKTLGLA 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
PTKA KNI+K + +LC E+ +G I E L G+G KT +L
Sbjct: 83 PTKA---KNIVK----TARQLC-EHHQG-EIPEDSEALQALPGVGRKTANVLLNTAFGHP 133
Query: 196 DFPVDTHVFEISK----AIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
VDTHVF +S A G DR L + +P + D + L G+
Sbjct: 134 VIAVDTHVFRVSNRTGLACGKTVEEVDRK-----LARNVPPNWRKDAHHYLILQGRY--T 186
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNK 280
C + RK G CP+L+ C NK
Sbjct: 187 C------KARKPLCGK-CPVLHECSYPNK 208
>gi|344198782|ref|YP_004783108.1| endonuclease III [Acidithiobacillus ferrivorans SS3]
gi|343774226|gb|AEM46782.1| endonuclease III [Acidithiobacillus ferrivorans SS3]
Length = 216
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 92/221 (41%), Gaps = 30/221 (13%)
Query: 64 KNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQK 123
+ ++P E + G S LV VLS +T+ +L +T PT + ++A +
Sbjct: 14 RAAIPNPKTELNYG---SPFQLLVAVVLSAQSTDKVVNTCTQTLFATAPTPDAMVALGED 70
Query: 124 CIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKT 183
I+ IR GL KA + + + LL L G ++ + L G+G KT
Sbjct: 71 GIKAHIRRLGLFNAKARHVHALAQQLLA---------LHGGAVPADREALEALPGVGRKT 121
Query: 184 VACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQ----RIPKELKFDLN 239
VL H Q VDTH+F + IG P KT L + Q +P E D +
Sbjct: 122 ANVVLNTHFGQPTIAVDTHIFRVGNRIGIAP-----GKTPLAVEQALLAAVPAEYVQDAH 176
Query: 240 CLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNK 280
LL HG+ C+ R+ G+ C L CE +K
Sbjct: 177 HLLILHGRY--TCMA------RRPHCGH-CRLFQCCEWPDK 208
>gi|20093633|ref|NP_613480.1| EndoIII-related endonuclease [Methanopyrus kandleri AV19]
gi|19886502|gb|AAM01410.1| Predicted EndoIII-related endonuclease [Methanopyrus kandleri AV19]
Length = 233
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 85 GLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
L++ ++SQ T + + + F T + V K + +R GL KA IK
Sbjct: 48 ALIQAIISQRTRDDVTDRVAERFLRKFKTPKDVAEVNLKDLVETLRDAGLYRQKAKMIKE 107
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
+ +L L LE + +E + EL R G+GPKT VL+F D PVDTHV
Sbjct: 108 CCERILADG--LDLEEIVQKPTEEARRELMRLPGVGPKTADVVLLFAGGHDVCPVDTHVA 165
Query: 205 EISKAIGW 212
+S+ +G
Sbjct: 166 RVSRRLGL 173
>gi|402305793|ref|ZP_10824852.1| endonuclease III [Haemophilus sputorum HK 2154]
gi|400376906|gb|EJP29793.1| endonuclease III [Haemophilus sputorum HK 2154]
Length = 211
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 90/222 (40%), Gaps = 22/222 (9%)
Query: 60 MTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
+TR +N P E + + + L+ +LS T+ KA L T E +LA
Sbjct: 10 LTRLRNENPHPTTELNFS---TPFELLIAVILSAQATDKGVNKATDKLFPVANTPEAILA 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ I+ GL +KA I + L+E + E + L G+
Sbjct: 67 LGVDGLKEYIKTIGLFNSKAENIIKTCRDLVEKHHS---------QVPENREALEALAGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL VDTH+F ++ G+ P D K LN+ +P E K D++
Sbjct: 118 GRKTANVVLNTAFGHPTIAVDTHIFRVANRTGFAP-GKDVVKVEEKLNKVVPSEFKVDVH 176
Query: 240 CLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G+ C + + CE KT
Sbjct: 177 HWLILHGRY--TCI------ARKPRCGS-CIIEDLCEYKEKT 209
>gi|170761508|ref|YP_001785537.1| endonuclease III [Clostridium botulinum A3 str. Loch Maree]
gi|169408497|gb|ACA56908.1| endonuclease III [Clostridium botulinum A3 str. Loch Maree]
Length = 213
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 64 KNSVPLDMNEYDEG----EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
KN + + ++ Y + E + + L+ TVLS TT+ + L + T + L
Sbjct: 7 KNVIDILVDTYPDANCELEHRNPFELLIATVLSAQTTDKKVNEITKELFKEYSTPKDFLK 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ +E I+ GL K+ KNIL E + K + + +L+ G+
Sbjct: 67 LTREELEEKIKKIGLYRNKS---KNILLLCKELEEKFESQVPNDFN------DLTSLPGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL + VDTHVF +S IG V A++ KT L Q IPKEL ++
Sbjct: 118 GRKTANVVLANAFKVPTIAVDTHVFRVSNRIGLV-DASNVLKTEEQLQQVIPKELWILMH 176
Query: 240 CLLYTHGKLC 249
+L HG+ C
Sbjct: 177 HVLIFHGRRC 186
>gi|384440189|ref|YP_005654913.1| Endonuclease III [Thermus sp. CCB_US3_UF1]
gi|359291322|gb|AEV16839.1| Endonuclease III [Thermus sp. CCB_US3_UF1]
Length = 215
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 76/175 (43%), Gaps = 18/175 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV TVLS T+ + +A +L + FPT E + AA + +E IR GL TKA
Sbjct: 39 LVATVLSAQATDKSVNEATPALFARFPTPEALAAASPEAVEPYIRRIGLYKTKA------ 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+ +L E+ G + K L G+G KT VL VDTHV
Sbjct: 93 -KNLVALARRLVAEH--GGEVPRDKKALMALPGVGWKTATVVLGAAFGVPGIAVDTHVAR 149
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL--------CRNC 252
+S+ +G + A + L PKE L+ L HG+ CR+C
Sbjct: 150 VSRRLG-LSLAKRPEQVGAELEALFPKEDWVFLHHALVLHGRYVCTARKPRCRDC 203
>gi|392382883|ref|YP_005032080.1| conserved protein of unknown function [Azospirillum brasilense
Sp245]
gi|356877848|emb|CCC98702.1| conserved protein of unknown function [Azospirillum brasilense
Sp245]
Length = 136
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 153 KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF-HLQQDDFPVDTHVFEISKAIG 211
+G+L L++L +++ E +A L G+GPKT A V+ F L++ PVD+H ++ G
Sbjct: 2 RGELSLDFLAEMTVPEARAWLQALPGVGPKTSAAVMSFSSLRRPALPVDSHHHRVAVRTG 61
Query: 212 WVPTAADRNKTYLHLNQRIPKELK----FDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
+P + ++ L R+P + +D + ++ HG+ R C + +R
Sbjct: 62 LIPPSVAVGPSHTILEARLPPDWTAQEIYDHHEVMMLHGQ--RVCFYRNPACER------ 113
Query: 268 LCPLLNYCEKSNK 280
C LL C + K
Sbjct: 114 -CVLLELCPEGQK 125
>gi|374327779|ref|YP_005085979.1| hypothetical protein P186_2339 [Pyrobaculum sp. 1860]
gi|356643048|gb|AET33727.1| hypothetical protein P186_2339 [Pyrobaculum sp. 1860]
Length = 224
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLA 135
E ++ + LV VLSQNT++ N+ +AF +LK T E +LA + +E IR G+
Sbjct: 28 EGGNLFELLVAVVLSQNTSDKNAFRAFTNLKKRLGGVTPEALLALSTEELEELIRPAGMH 87
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
+A +K + + K + + L + E + L G+G KT A V++ +L
Sbjct: 88 RQRARNLKALADAFI--KLGITPQRLVEMGPGEARRLLLSLPGVGEKT-ADVVLVNLGLP 144
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
FPVDTH+ I+K G ++ ++ + +P E +++ L G+
Sbjct: 145 AFPVDTHITRIAKRWGVGDRYGQISRWFMEM---VPPERYLEIHLKLIQFGR 193
>gi|344941613|ref|ZP_08780901.1| endonuclease III [Methylobacter tundripaludum SV96]
gi|344262805|gb|EGW23076.1| endonuclease III [Methylobacter tundripaludum SV96]
Length = 241
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ VLS T+ KA A L T +LA + ++ I+ GL +KA
Sbjct: 43 STFELLIAVVLSAQATDKGVNKATAKLFPVANTPGDILALGETGLKEYIKTIGLFNSKAT 102
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
I + + LL+ + + + EL G+G KT +L + VD
Sbjct: 103 HIITLCRQLLDKHAG---------EVPQTREELEALAGVGRKTANVILNTAFGRHTIAVD 153
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F ++ G P + + L++ +PK+ K D + LL HG+ CI + +
Sbjct: 154 THIFRVANRTGIAP-GKNVLEVERKLDKWVPKQHKKDAHHLLILHGRY--TCIAR---KP 207
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
R ES C + + CE +KT
Sbjct: 208 RCES----CVIEDLCEYEHKT 224
>gi|325294609|ref|YP_004281123.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065057|gb|ADY73064.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 218
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLS T + + KA L +L +++ I + I G KA IK I
Sbjct: 39 LIATVLSLRTKDEITAKAANKLFQVADNPYDMLKLKEEEIASLIYPVGFYRRKAKNIKEI 98
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+E G DEI EL + G+G KT V+ + VDTHV
Sbjct: 99 CKVLIEK--------YNGKVPDEID-ELLKLPGVGRKTANLVVTLGYGKPGICVDTHVHR 149
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS +G+V T +T L +++PK+ ++N LL + G+ +C K
Sbjct: 150 ISNRLGYVNTKTP-EETEFALREKLPKDYWIEINDLLVSLGQHICHPTSPKCSQ------ 202
Query: 265 AGNLCPLLNYCEKSN 279
CP+ YC+K +
Sbjct: 203 ----CPIEKYCDKRD 213
>gi|313901141|ref|ZP_07834629.1| endonuclease III [Clostridium sp. HGF2]
gi|373121433|ref|ZP_09535301.1| endonuclease III [Erysipelotrichaceae bacterium 21_3]
gi|312954099|gb|EFR35779.1| endonuclease III [Clostridium sp. HGF2]
gi|371665451|gb|EHO30616.1| endonuclease III [Erysipelotrichaceae bacterium 21_3]
Length = 215
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E + + LV VLS TT+A K +L F T + + A+ IE+ IR GL
Sbjct: 20 ELEHRNAFELLVAVVLSAQTTDAAVNKVTPALFEAFKTPQAMAEADIHDIEDKIRRIGLY 79
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA I+N+ + LLES + E ++ EL+ G+G KT V
Sbjct: 80 RNKARSIQNLSRSLLESFNGVVPESMK---------ELTSLAGVGRKTANVVRSVCFDIP 130
Query: 196 DFPVDTHVFEISKAIG 211
VDTHV ISK +G
Sbjct: 131 SIAVDTHVERISKRLG 146
>gi|119872647|ref|YP_930654.1| HhH-GPD family protein [Pyrobaculum islandicum DSM 4184]
gi|119674055|gb|ABL88311.1| HhH-GPD family protein [Pyrobaculum islandicum DSM 4184]
Length = 222
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTW--EHVLAAEQKCIENAIRCGGLAP 136
E+++ + V +LSQNT++ N+ +AF +LK T E + + + I+ G+
Sbjct: 27 EKNLFELFVAVILSQNTSDKNAFRAFENLKMRLGTITPESLNKMSEGELAELIKPAGMYR 86
Query: 137 TKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD 196
+A +KN+ + L K + + L + + +A L G+G KT A V++ +L
Sbjct: 87 QRARVLKNLAETFL--KYDITPQRLLEMGAERARAFLLTLPGVGKKT-ADVILVNLGLPA 143
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
FPVDTH+ I++ G + + ++ ++ +R+P+ +L+ L G+
Sbjct: 144 FPVDTHITRIARRWGIGKSYDEISRWFI---ERLPQHKYLELHLKLIQFGR 191
>gi|307353834|ref|YP_003894885.1| HhH-GPD family protein [Methanoplanus petrolearius DSM 11571]
gi|307157067|gb|ADN36447.1| HhH-GPD family protein [Methanoplanus petrolearius DSM 11571]
Length = 211
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 16/178 (8%)
Query: 45 PPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAF 104
PPE + R ++ D P D ++ ++ +L+Q T N KA
Sbjct: 6 PPEIILKRIISCLQDIYGDAGWWPGDADQV-----------MIGAILTQQTRWENVEKAL 54
Query: 105 ASLKST-FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRG 163
++L+S T + VLAA+ + + IRC G K +K L + KG + + L
Sbjct: 55 SNLESVGIKTLDDVLAADDEIVMENIRCTGYYRMKTGRLKE-LSSFVAGKGGV--DALYD 111
Query: 164 LSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNK 221
+ +DE++ +L +G+G +T +L + L + +D++ IS G + DR K
Sbjct: 112 VPVDELRRDLLGVKGVGAETADSILCYALNMPSYVIDSYTERISGCAG-ITAKKDRLK 168
>gi|307288541|ref|ZP_07568525.1| endonuclease III [Enterococcus faecalis TX0109]
gi|422703006|ref|ZP_16760834.1| endonuclease III [Enterococcus faecalis TX1302]
gi|306500448|gb|EFM69781.1| endonuclease III [Enterococcus faecalis TX0109]
gi|315165565|gb|EFU09582.1| endonuclease III [Enterococcus faecalis TX1302]
Length = 215
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 18/193 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA L + FPT E + AA + I I+ GL KA KNI
Sbjct: 34 LIAVILSAQATDVSVNKATPGLFAAFPTPEALAAAPVEEIIAKIKTIGLYRNKA---KNI 90
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
C + LE G + + + EL G+G KT V+ + F VDTHV
Sbjct: 91 KAC-----AQQLLERFNG-EVPQTRDELVSLPGVGRKTANVVMGDAFGEPAFAVDTHVER 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+SK + A+ + L +++PKEL + + G+ +C+ + +
Sbjct: 145 VSKRLRICKLNANVTEVEQTLMRKVPKELWVKTHHTMILFGRY--HCLARAPKCEA---- 198
Query: 266 GNLCPLLNYCEKS 278
CPLL C++
Sbjct: 199 ---CPLLYMCQEG 208
>gi|383642104|ref|ZP_09954510.1| endonuclease III [Sphingomonas elodea ATCC 31461]
Length = 221
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 72 NEYDEGEEESV--LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
N + E E ESV LV VLS T+A KA +L + T E ++A + ++ I
Sbjct: 17 NPHPETELESVNTFTLLVAVVLSAQATDAGVNKATRALFAQVDTPEKMVALGEAGLKEHI 76
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
+ GL TKA + + + L+ G ++ E + L + G+G KT V+
Sbjct: 77 KTIGLFNTKAKNVIALSEALIRDHGG---------AVPEDRDALEQLPGVGRKTANVVMN 127
Query: 190 FHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-L 248
+ F VDTH+F + G P L L + +P+ + + L HG+ +
Sbjct: 128 TAFGHETFAVDTHIFRVGNRTGLAPGKTPL-AVELKLEKAVPQPFRLHAHHWLILHGRYI 186
Query: 249 CR 250
C+
Sbjct: 187 CK 188
>gi|158319946|ref|YP_001512453.1| endonuclease III [Alkaliphilus oremlandii OhILAs]
gi|158140145|gb|ABW18457.1| endonuclease III [Alkaliphilus oremlandii OhILAs]
Length = 210
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 81/192 (42%), Gaps = 14/192 (7%)
Query: 62 RDKNSVPLDMNEYDEG----EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHV 117
++K + L M EY + E E+ LV T+LS TT+ + L +PT +
Sbjct: 4 KNKKIIELLMAEYPDAKCELEHENPFQLLVATILSAQTTDKKVNEVTKDLFKEYPTLDEF 63
Query: 118 LAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFR 177
L Q +EN I+ GL KA I + + L E + G ++
Sbjct: 64 LLLTQAELENRIKQIGLYRNKAKHIYTMCRQLKEEFNGEVPNTMDG---------ITSLA 114
Query: 178 GIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFD 237
G G KT VL VDTHVF +S IG + A + T L L + I K+L
Sbjct: 115 GAGRKTANVVLSNAFGVPSIAVDTHVFRVSNRIG-LANADNVLDTELQLQKAISKKLWSL 173
Query: 238 LNCLLYTHGKLC 249
+ L+ HG+ C
Sbjct: 174 AHHLIIFHGRRC 185
>gi|343785574|gb|AEM59540.1| 8-oxoguanine DNA glycosylase [Tigriopus japonicus]
Length = 343
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 110 TFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEI 169
TFP+ E LA +E +R G +AA I K + E+ G+ L LR L E
Sbjct: 165 TFPSVEQ-LAKNPMNVEKKLRGLGFG-YRAAYIAKSAKQIAENGGEEYLLKLRTLPYQEA 222
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQD-DFPVDTHVFEIS 207
+ EL + GIGPK CVL+ L Q PVDTH+F+I+
Sbjct: 223 RDELLKLTGIGPKVADCVLLMSLDQTAAIPVDTHMFQIA 261
>gi|188997187|ref|YP_001931438.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932254|gb|ACD66884.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 215
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 21/197 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T + + +A L T E +L +K I I G KA IK I
Sbjct: 39 LISTILSLRTKDQITAQASDRLFKVADTPEKILKLSEKEIVKLIYPVGFYRNKAKIIKEI 98
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+E D+++ LS F+G+G KT VL + VD HV
Sbjct: 99 SKILVEK--------FNSKVPDDLETLLS-FKGVGRKTANLVLSEGFGKPAICVDVHVHR 149
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS IG V T + +T L + +PK+ D+N +L G+ +C+ K
Sbjct: 150 ISNRIGLVKT-KNPEETEFKLMKILPKKYWKDINFVLVAFGQTICKPVKPKCKE------ 202
Query: 265 AGNLCPLLNYCEKSNKT 281
CP++ YCE K+
Sbjct: 203 ----CPIVKYCEHDKKS 215
>gi|229546166|ref|ZP_04434891.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX1322]
gi|256852805|ref|ZP_05558175.1| endonuclease III [Enterococcus faecalis T8]
gi|307291137|ref|ZP_07571022.1| endonuclease III [Enterococcus faecalis TX0411]
gi|422684523|ref|ZP_16742757.1| endonuclease III [Enterococcus faecalis TX4000]
gi|424759883|ref|ZP_18187541.1| endonuclease III [Enterococcus faecalis R508]
gi|229308690|gb|EEN74677.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX1322]
gi|256711264|gb|EEU26302.1| endonuclease III [Enterococcus faecalis T8]
gi|306497791|gb|EFM67323.1| endonuclease III [Enterococcus faecalis TX0411]
gi|315030680|gb|EFT42612.1| endonuclease III [Enterococcus faecalis TX4000]
gi|402404286|gb|EJV36916.1| endonuclease III [Enterococcus faecalis R508]
Length = 215
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 18/193 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA L + FPT E + AA + I I+ GL KA KNI
Sbjct: 34 LIAVILSAQATDVSVNKATPGLFAAFPTPEALAAAPVEEIIAKIKTIGLYRNKA---KNI 90
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
C + LE G + + + EL G+G KT V+ + F VDTHV
Sbjct: 91 KAC-----AQQLLERFNG-EVPQTRDELVSLPGVGRKTANVVMGDAFGEPAFAVDTHVER 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+SK + A+ + L +++PKEL + + G+ +C+ + +
Sbjct: 145 VSKRLRICKLNANVTEVEQTLMRKVPKELWVKTHHTMIFFGRY--HCLARAPKCEA---- 198
Query: 266 GNLCPLLNYCEKS 278
CPLL C++
Sbjct: 199 ---CPLLYMCQEG 208
>gi|448358879|ref|ZP_21547553.1| HhH-GPD family protein [Natrialba chahannaoensis JCM 10990]
gi|445644559|gb|ELY97572.1| HhH-GPD family protein [Natrialba chahannaoensis JCM 10990]
Length = 299
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 74/177 (41%), Gaps = 31/177 (17%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-------------------KSTFPT----WEHVLA--- 119
LV+T+LSQNT++ S A +L T PT E LA
Sbjct: 64 LVRTILSQNTSDKASQPAHDALIERYGHSSSRADETGASAEAETGPTPANDGEADLAVAL 123
Query: 120 --AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCL--EYLRGLSIDEIKAELSR 175
AEQ + I GL K+ + + + + G ++ + D ++ L
Sbjct: 124 AHAEQSQLAETISSAGLYNQKSEMLIGAAEWVCDEFGSAAEFDRFVTDEAPDTVRETLLD 183
Query: 176 FRGIGPKTVACVLMFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+GPKT CVL+F + FPVDTHV I + +G P AD + L +P
Sbjct: 184 VRGVGPKTADCVLLFAGGRGGVFPVDTHVHRIYRRMGIAPAEADHEEVRAVLEAEVP 240
>gi|29375731|ref|NP_814885.1| endonuclease III [Enterococcus faecalis V583]
gi|227518409|ref|ZP_03948458.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX0104]
gi|227552941|ref|ZP_03982990.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
HH22]
gi|229550352|ref|ZP_04439077.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
ATCC 29200]
gi|255973123|ref|ZP_05423709.1| endonuclease III/Nth [Enterococcus faecalis T1]
gi|255976166|ref|ZP_05426752.1| endonuclease III/Nth [Enterococcus faecalis T2]
gi|256618739|ref|ZP_05475585.1| endonuclease III/Nth [Enterococcus faecalis ATCC 4200]
gi|256762163|ref|ZP_05502743.1| endonuclease III [Enterococcus faecalis T3]
gi|256958651|ref|ZP_05562822.1| endonuclease III/Nth [Enterococcus faecalis DS5]
gi|256962250|ref|ZP_05566421.1| endonuclease III/Nth [Enterococcus faecalis Merz96]
gi|256965444|ref|ZP_05569615.1| endonuclease III/Nth [Enterococcus faecalis HIP11704]
gi|257077995|ref|ZP_05572356.1| endonuclease III/Nth [Enterococcus faecalis JH1]
gi|257082883|ref|ZP_05577244.1| endonuclease III [Enterococcus faecalis E1Sol]
gi|257085585|ref|ZP_05579946.1| endonuclease III/Nth [Enterococcus faecalis Fly1]
gi|257086509|ref|ZP_05580870.1| endonuclease III/Nth [Enterococcus faecalis D6]
gi|257089566|ref|ZP_05583927.1| endonuclease III [Enterococcus faecalis CH188]
gi|257415773|ref|ZP_05592767.1| endonuclease III/Nth [Enterococcus faecalis ARO1/DG]
gi|257418983|ref|ZP_05595977.1| endonuclease III/Nth [Enterococcus faecalis T11]
gi|257422928|ref|ZP_05599918.1| endonuclease III [Enterococcus faecalis X98]
gi|293383279|ref|ZP_06629194.1| endonuclease III [Enterococcus faecalis R712]
gi|293387564|ref|ZP_06632113.1| endonuclease III [Enterococcus faecalis S613]
gi|294781025|ref|ZP_06746377.1| endonuclease III [Enterococcus faecalis PC1.1]
gi|300859914|ref|ZP_07106002.1| endonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|307274543|ref|ZP_07555723.1| endonuclease III [Enterococcus faecalis TX2134]
gi|307278810|ref|ZP_07559873.1| endonuclease III [Enterococcus faecalis TX0860]
gi|312903687|ref|ZP_07762863.1| endonuclease III [Enterococcus faecalis TX0635]
gi|312905786|ref|ZP_07764806.1| endonuclease III [Enterococcus faecalis DAPTO 512]
gi|312909159|ref|ZP_07768018.1| endonuclease III [Enterococcus faecalis DAPTO 516]
gi|312951406|ref|ZP_07770304.1| endonuclease III [Enterococcus faecalis TX0102]
gi|384512896|ref|YP_005707989.1| endonuclease III [Enterococcus faecalis OG1RF]
gi|384518260|ref|YP_005705565.1| endonuclease III [Enterococcus faecalis 62]
gi|397699542|ref|YP_006537330.1| endonuclease III [Enterococcus faecalis D32]
gi|421512166|ref|ZP_15958979.1| Endonuclease III [Enterococcus faecalis ATCC 29212]
gi|422689556|ref|ZP_16747665.1| endonuclease III [Enterococcus faecalis TX0630]
gi|422691633|ref|ZP_16749666.1| endonuclease III [Enterococcus faecalis TX0031]
gi|422694151|ref|ZP_16752155.1| endonuclease III [Enterococcus faecalis TX4244]
gi|422700613|ref|ZP_16758459.1| endonuclease III [Enterococcus faecalis TX1342]
gi|422705899|ref|ZP_16763690.1| endonuclease III [Enterococcus faecalis TX0043]
gi|422711028|ref|ZP_16767962.1| endonuclease III [Enterococcus faecalis TX0027]
gi|422712347|ref|ZP_16769117.1| endonuclease III [Enterococcus faecalis TX0309A]
gi|422718091|ref|ZP_16774763.1| endonuclease III [Enterococcus faecalis TX0309B]
gi|422721186|ref|ZP_16777781.1| endonuclease III [Enterococcus faecalis TX0017]
gi|422721893|ref|ZP_16778473.1| endonuclease III [Enterococcus faecalis TX2137]
gi|422726706|ref|ZP_16783150.1| endonuclease III [Enterococcus faecalis TX0312]
gi|422729113|ref|ZP_16785518.1| endonuclease III [Enterococcus faecalis TX0012]
gi|422733017|ref|ZP_16789343.1| endonuclease III [Enterococcus faecalis TX0645]
gi|422734872|ref|ZP_16791154.1| endonuclease III [Enterococcus faecalis TX1341]
gi|422739571|ref|ZP_16794747.1| endonuclease III [Enterococcus faecalis TX2141]
gi|424671493|ref|ZP_18108492.1| endonuclease III [Enterococcus faecalis 599]
gi|424678455|ref|ZP_18115294.1| endonuclease III [Enterococcus faecalis ERV103]
gi|424681894|ref|ZP_18118678.1| endonuclease III [Enterococcus faecalis ERV116]
gi|424685054|ref|ZP_18121760.1| endonuclease III [Enterococcus faecalis ERV129]
gi|424687158|ref|ZP_18123808.1| endonuclease III [Enterococcus faecalis ERV25]
gi|424692115|ref|ZP_18128629.1| endonuclease III [Enterococcus faecalis ERV31]
gi|424693250|ref|ZP_18129696.1| endonuclease III [Enterococcus faecalis ERV37]
gi|424697506|ref|ZP_18133833.1| endonuclease III [Enterococcus faecalis ERV41]
gi|424700671|ref|ZP_18136854.1| endonuclease III [Enterococcus faecalis ERV62]
gi|424703642|ref|ZP_18139775.1| endonuclease III [Enterococcus faecalis ERV63]
gi|424712278|ref|ZP_18144470.1| endonuclease III [Enterococcus faecalis ERV65]
gi|424718347|ref|ZP_18147596.1| endonuclease III [Enterococcus faecalis ERV68]
gi|424721223|ref|ZP_18150317.1| endonuclease III [Enterococcus faecalis ERV72]
gi|424725925|ref|ZP_18154614.1| endonuclease III [Enterococcus faecalis ERV73]
gi|424727389|ref|ZP_18156021.1| endonuclease III [Enterococcus faecalis ERV81]
gi|424739690|ref|ZP_18168107.1| endonuclease III [Enterococcus faecalis ERV85]
gi|424751534|ref|ZP_18179562.1| endonuclease III [Enterococcus faecalis ERV93]
gi|428766664|ref|YP_007152775.1| endonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|430360541|ref|ZP_19426330.1| endonuclease III [Enterococcus faecalis OG1X]
gi|430369976|ref|ZP_19428832.1| endonuclease III [Enterococcus faecalis M7]
gi|29343192|gb|AAO80955.1| endonuclease III [Enterococcus faecalis V583]
gi|227074087|gb|EEI12050.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
TX0104]
gi|227177911|gb|EEI58883.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
HH22]
gi|229304474|gb|EEN70470.1| DNA-(apurinic or apyrimidinic site) lyase [Enterococcus faecalis
ATCC 29200]
gi|255964141|gb|EET96617.1| endonuclease III/Nth [Enterococcus faecalis T1]
gi|255969038|gb|EET99660.1| endonuclease III/Nth [Enterococcus faecalis T2]
gi|256598266|gb|EEU17442.1| endonuclease III/Nth [Enterococcus faecalis ATCC 4200]
gi|256683414|gb|EEU23109.1| endonuclease III [Enterococcus faecalis T3]
gi|256949147|gb|EEU65779.1| endonuclease III/Nth [Enterococcus faecalis DS5]
gi|256952746|gb|EEU69378.1| endonuclease III/Nth [Enterococcus faecalis Merz96]
gi|256955940|gb|EEU72572.1| endonuclease III/Nth [Enterococcus faecalis HIP11704]
gi|256986025|gb|EEU73327.1| endonuclease III/Nth [Enterococcus faecalis JH1]
gi|256990913|gb|EEU78215.1| endonuclease III [Enterococcus faecalis E1Sol]
gi|256993615|gb|EEU80917.1| endonuclease III/Nth [Enterococcus faecalis Fly1]
gi|256994539|gb|EEU81841.1| endonuclease III/Nth [Enterococcus faecalis D6]
gi|256998378|gb|EEU84898.1| endonuclease III [Enterococcus faecalis CH188]
gi|257157601|gb|EEU87561.1| endonuclease III/Nth [Enterococcus faecalis ARO1/DG]
gi|257160811|gb|EEU90771.1| endonuclease III/Nth [Enterococcus faecalis T11]
gi|257164752|gb|EEU94712.1| endonuclease III [Enterococcus faecalis X98]
gi|291079302|gb|EFE16666.1| endonuclease III [Enterococcus faecalis R712]
gi|291083074|gb|EFE20037.1| endonuclease III [Enterococcus faecalis S613]
gi|294451971|gb|EFG20421.1| endonuclease III [Enterococcus faecalis PC1.1]
gi|295112731|emb|CBL31368.1| DNA-(apurinic or apyrimidinic site) lyase /endonuclease III
[Enterococcus sp. 7L76]
gi|300850732|gb|EFK78481.1| endonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|306504481|gb|EFM73688.1| endonuclease III [Enterococcus faecalis TX0860]
gi|306508695|gb|EFM77785.1| endonuclease III [Enterococcus faecalis TX2134]
gi|310628125|gb|EFQ11408.1| endonuclease III [Enterococcus faecalis DAPTO 512]
gi|310630666|gb|EFQ13949.1| endonuclease III [Enterococcus faecalis TX0102]
gi|310633040|gb|EFQ16323.1| endonuclease III [Enterococcus faecalis TX0635]
gi|311290583|gb|EFQ69139.1| endonuclease III [Enterococcus faecalis DAPTO 516]
gi|315028111|gb|EFT40043.1| endonuclease III [Enterococcus faecalis TX2137]
gi|315031632|gb|EFT43564.1| endonuclease III [Enterococcus faecalis TX0017]
gi|315034925|gb|EFT46857.1| endonuclease III [Enterococcus faecalis TX0027]
gi|315144668|gb|EFT88684.1| endonuclease III [Enterococcus faecalis TX2141]
gi|315148491|gb|EFT92507.1| endonuclease III [Enterococcus faecalis TX4244]
gi|315150361|gb|EFT94377.1| endonuclease III [Enterococcus faecalis TX0012]
gi|315153677|gb|EFT97693.1| endonuclease III [Enterococcus faecalis TX0031]
gi|315156505|gb|EFU00522.1| endonuclease III [Enterococcus faecalis TX0043]
gi|315158331|gb|EFU02348.1| endonuclease III [Enterococcus faecalis TX0312]
gi|315160901|gb|EFU04918.1| endonuclease III [Enterococcus faecalis TX0645]
gi|315168422|gb|EFU12439.1| endonuclease III [Enterococcus faecalis TX1341]
gi|315171005|gb|EFU15022.1| endonuclease III [Enterococcus faecalis TX1342]
gi|315573746|gb|EFU85937.1| endonuclease III [Enterococcus faecalis TX0309B]
gi|315577515|gb|EFU89706.1| endonuclease III [Enterococcus faecalis TX0630]
gi|315582639|gb|EFU94830.1| endonuclease III [Enterococcus faecalis TX0309A]
gi|323480393|gb|ADX79832.1| endonuclease III [Enterococcus faecalis 62]
gi|327534785|gb|AEA93619.1| endonuclease III [Enterococcus faecalis OG1RF]
gi|397336181|gb|AFO43853.1| endonuclease III [Enterococcus faecalis D32]
gi|401674735|gb|EJS81080.1| Endonuclease III [Enterococcus faecalis ATCC 29212]
gi|402350027|gb|EJU84940.1| endonuclease III [Enterococcus faecalis ERV116]
gi|402351433|gb|EJU86317.1| endonuclease III [Enterococcus faecalis ERV103]
gi|402358521|gb|EJU93189.1| endonuclease III [Enterococcus faecalis 599]
gi|402359907|gb|EJU94527.1| endonuclease III [Enterococcus faecalis ERV129]
gi|402360640|gb|EJU95236.1| endonuclease III [Enterococcus faecalis ERV31]
gi|402365539|gb|EJU99958.1| endonuclease III [Enterococcus faecalis ERV25]
gi|402373403|gb|EJV07480.1| endonuclease III [Enterococcus faecalis ERV62]
gi|402374735|gb|EJV08739.1| endonuclease III [Enterococcus faecalis ERV37]
gi|402376056|gb|EJV10026.1| endonuclease III [Enterococcus faecalis ERV41]
gi|402381314|gb|EJV15023.1| endonuclease III [Enterococcus faecalis ERV65]
gi|402381902|gb|EJV15595.1| endonuclease III [Enterococcus faecalis ERV68]
gi|402384517|gb|EJV18069.1| endonuclease III [Enterococcus faecalis ERV63]
gi|402390268|gb|EJV23623.1| endonuclease III [Enterococcus faecalis ERV73]
gi|402391893|gb|EJV25171.1| endonuclease III [Enterococcus faecalis ERV72]
gi|402396860|gb|EJV29904.1| endonuclease III [Enterococcus faecalis ERV81]
gi|402402961|gb|EJV35657.1| endonuclease III [Enterococcus faecalis ERV85]
gi|402405448|gb|EJV38039.1| endonuclease III [Enterococcus faecalis ERV93]
gi|427184837|emb|CCO72061.1| endonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|429512818|gb|ELA02414.1| endonuclease III [Enterococcus faecalis OG1X]
gi|429515703|gb|ELA05213.1| endonuclease III [Enterococcus faecalis M7]
Length = 215
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 18/193 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA L + FPT E + AA + I I+ GL KA KNI
Sbjct: 34 LIAVILSAQATDVSVNKATPGLFAAFPTPEALAAAPVEEIIAKIKTIGLYRNKA---KNI 90
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
C + LE G + + + EL G+G KT V+ + F VDTHV
Sbjct: 91 KAC-----AQQLLERFNG-EVPQTRDELVSLPGVGRKTANVVMGDAFGEPAFAVDTHVER 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+SK + A+ + L +++PKEL + + G+ +C+ + +
Sbjct: 145 VSKRLRICKLNANVTEVEQTLMRKVPKELWVKTHHTMIFFGRY--HCLARAPKCEA---- 198
Query: 266 GNLCPLLNYCEKS 278
CPLL C++
Sbjct: 199 ---CPLLYMCQEG 208
>gi|170289841|ref|YP_001736657.1| EndoIII-related endonuclease [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170173921|gb|ACB06974.1| Predicted EndoIII-related endonuclease [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 223
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKS--TFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
LV TV+SQNT + N+++A +LK + T E ++ + +E IR GL KA +K
Sbjct: 36 LVATVISQNTNDRNTMRAMKNLKERLGYLTPEKIMELSDEELEELIRPAGLHKQKAKYLK 95
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
I + L S G LE + L +E + L GIGPKT A VL+ + ++ VD H+
Sbjct: 96 LIAERL--SGG--ALEEILSLETEEARDRLLEIPGIGPKT-ADVLLSLMGRETIGVDRHI 150
Query: 204 FEISKAIG 211
+S +G
Sbjct: 151 ARVSSRLG 158
>gi|365921054|ref|ZP_09445354.1| endonuclease III [Cardiobacterium valvarum F0432]
gi|364576842|gb|EHM54141.1| endonuclease III [Cardiobacterium valvarum F0432]
Length = 210
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 10/172 (5%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E S + L+ +LS T+ KA L T T +LA + +++ I+ GL
Sbjct: 23 ELEYSSTFELLIAVILSAQATDKGVNKATRRLFPTANTPAAILALGEDGLKDYIKTIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
+KAA I + L++ +Y + D +A L + G+G KT +L +Q
Sbjct: 83 NSKAANILKTCRILID-------DYHGEVPAD--RAALEKLPGVGRKTANVILNTAYRQP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
VDTH+F ++ G P R L QR+P E D + L HG+
Sbjct: 134 VMAVDTHIFRVANRTGIAPGKNVR-AVEDGLMQRVPPEYLLDAHHWLILHGR 184
>gi|78356480|ref|YP_387929.1| HhH-GPD family protein [Desulfovibrio alaskensis G20]
gi|78218885|gb|ABB38234.1| HhH-GPD family protein [Desulfovibrio alaskensis G20]
Length = 221
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 8/164 (4%)
Query: 89 TVLSQNTTEANSLKAFASLKSTFPTWEH-VLAAEQKCIENAIRCGGLAPTKAACIKNILK 147
VL+QN + N+ +A ++S E V AA +E +R G KAA ++ +++
Sbjct: 36 AVLTQNASWTNAGQALQRMRSADMLSESGVAAAAPDTLEELVRPAGFYRQKAATLRRLVQ 95
Query: 148 CLLE-SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEI 206
L E + G + L G S+D ++A L +GIGP+T +L++ L F VD + I
Sbjct: 96 FLYEEADGDI--RNLAGTSMDSLRARLLDIKGIGPETADSILLYALDMPSFVVDAYTRRI 153
Query: 207 SKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCR 250
G +P + Y + + L D++ H L R
Sbjct: 154 CVRHGLLP----EDVQYAEMREFFMDVLPADVSVYNEYHALLVR 193
>gi|385830614|ref|YP_005868427.1| endonuclease III [Lactococcus lactis subsp. lactis CV56]
gi|326406622|gb|ADZ63693.1| endonuclease III [Lactococcus lactis subsp. lactis CV56]
Length = 218
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 90/207 (43%), Gaps = 15/207 (7%)
Query: 74 YDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
+ E E E+ L+ T+LS T+ KA +L +TFP + + A+ + IE IR G
Sbjct: 22 HGELEWETPFQLLIATILSAQATDKGVNKATPALFATFPDAQTMSQAKVEEIEKLIRTIG 81
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L TKA I + L+ G L L L D K L G+G KT VL
Sbjct: 82 LYKTKAKNILRTSQMLVTDFGDL----LPDLPKD--KKVLQTLPGVGRKTANVVLAEAYG 135
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCI 253
VDTHV +SK + VP A + L + IP++ + L G+ +C
Sbjct: 136 IPGIAVDTHVERVSKRLDIVPQKATVLEVEEKLMKLIPQKKWVQAHHHLIFFGRY--HCT 193
Query: 254 KKGGNRQRKESAGNLCPLLNYCEKSNK 280
K K + CP+L+YC+ K
Sbjct: 194 AK------KPKCAD-CPVLDYCKFGKK 213
>gi|281491571|ref|YP_003353551.1| endonuclease III [Lactococcus lactis subsp. lactis KF147]
gi|281375289|gb|ADA64802.1| Endonuclease III [Lactococcus lactis subsp. lactis KF147]
Length = 218
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 89/207 (42%), Gaps = 15/207 (7%)
Query: 74 YDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
+ E E E+ L+ T+LS T+ KA +L + FP + + A+ + IE IR G
Sbjct: 22 HGELEWETPFQLLIATILSAQATDKGVNKATPALFAAFPDAQTMSQAKVEEIEKLIRTIG 81
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L TKA I + L+ G L L L D K L G+G KT VL
Sbjct: 82 LYKTKAKNILRTSQMLVTDFGDL----LPDLPKD--KKVLQTLPGVGRKTANVVLAEAYG 135
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCI 253
VDTHV +SK + VP A + L + IP+E + L G+ +C
Sbjct: 136 IPGIAVDTHVERVSKRLDIVPQKATVLEVEEKLMKLIPQEKWVQAHHHLIFFGRY--HCT 193
Query: 254 KKGGNRQRKESAGNLCPLLNYCEKSNK 280
K K + CP+L+YC+ K
Sbjct: 194 AK------KPKCAD-CPVLDYCKFGKK 213
>gi|389852800|ref|YP_006355034.1| endonuclease III [Pyrococcus sp. ST04]
gi|388250106|gb|AFK22959.1| endonuclease III [Pyrococcus sp. ST04]
Length = 216
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIR--CGGLAPTKAACIK 143
L+K ++SQ + + + L +P+ E + A + ++ ++ GL TK I
Sbjct: 37 LIKCIISQRNRDEVTDRVAEELFKRYPSMEDIARASIEEMQEFLKNLGIGLWKTKGRWIV 96
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ +LE G + L EL + GIG K VL + PVDTHV
Sbjct: 97 ESTRIILEKYGGVVPNTLE---------ELMKLPGIGRKCANIVLAYGFGIPAIPVDTHV 147
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRK 262
+SK +G VP A K L + +PK+ +N + HGK +CR K
Sbjct: 148 NRVSKRLGLVPPNATPEKVEEILKKLLPKDEWLYVNHAMVDHGKAVCRPIKPKCDE---- 203
Query: 263 ESAGNLCPLLNYCEK 277
CPL + C K
Sbjct: 204 ------CPLRDICPK 212
>gi|16082555|ref|NP_394252.1| endonuclease III [Thermoplasma acidophilum DSM 1728]
Length = 217
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 79/191 (41%), Gaps = 21/191 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLSQ T + + +A SL + + + A+ + I G K+ + I
Sbjct: 35 LITTVLSQRTKDETTDEAARSLYEKYRDIDGLADADPDEVGRIISKVGFWRVKSRKVVEI 94
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ + + Y SIDE L G+G KT VL + VDTHVF
Sbjct: 95 ARIIRDR-----YNYRVPDSIDE----LVSLPGVGLKTAKVVLAEGFNRPAIAVDTHVFR 145
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS IGW +A +T L + IP +L+ N ++ GK +CR
Sbjct: 146 ISHRIGW-SSARTPEETSEELERIIPVDLQVGFNPMMVEFGKAICRPV----------RP 194
Query: 265 AGNLCPLLNYC 275
+ CP+ YC
Sbjct: 195 LCDRCPVSEYC 205
>gi|422327448|ref|ZP_16408475.1| endonuclease III [Erysipelotrichaceae bacterium 6_1_45]
gi|371663288|gb|EHO28478.1| endonuclease III [Erysipelotrichaceae bacterium 6_1_45]
Length = 215
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E + + L+ VLS TT+A K +L F T + + A+ IE+ IR GL
Sbjct: 20 ELEHRNAFELLIAVVLSAQTTDAAVNKVTPALFEAFKTPQAMAEADIHDIEDKIRRIGLY 79
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA I+N+ + LLES + E ++ EL+ G+G KT V
Sbjct: 80 RNKARSIQNLSRSLLESFNGVVPESMK---------ELTSLAGVGRKTANVVRSVCFDIP 130
Query: 196 DFPVDTHVFEISKAIG 211
VDTHV ISK +G
Sbjct: 131 SIAVDTHVERISKRLG 146
>gi|260892299|ref|YP_003238396.1| DNA-(apurinic or apyrimidinic site) lyase [Ammonifex degensii KC4]
gi|260864440|gb|ACX51546.1| DNA-(apurinic or apyrimidinic site) lyase [Ammonifex degensii KC4]
Length = 240
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 13/147 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASL----KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAAC 141
LV T+LSQ++T+ +L+ + L K+ P L E++ + +R GL KA
Sbjct: 46 LVATLLSQHSTDRKALEVYRRLVQVVKNLSPA--SFLNCEEQELAEILRPVGLHRRKAKL 103
Query: 142 IKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
++ + + +++ L+ L L E + L R G+GPKT A VL+ HL FPVDT
Sbjct: 104 LRTLAREVVDFD----LKALSNLPTFEARQRLLRLPGVGPKT-ADVLLLHLGHPLFPVDT 158
Query: 202 HVFEISKAIGWV--PTAADRNKTYLHL 226
H+ I+ + W P + K ++ L
Sbjct: 159 HIARITWRLSWAKRPCYEEIQKVWMEL 185
>gi|257454852|ref|ZP_05620103.1| endonuclease III [Enhydrobacter aerosaccus SK60]
gi|257447785|gb|EEV22777.1| endonuclease III [Enhydrobacter aerosaccus SK60]
Length = 236
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E +S + L+ +LS T+ + A L + T + +L + +++ I+ GL
Sbjct: 45 ELEYQSNFELLIAVILSAQATDVSVNLATRKLYAVANTPQAILDLGEAGLKSYIKTIGLY 104
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
+KA KN++KC + K E + + + EL G+G KT VL Q
Sbjct: 105 NSKA---KNVMKCCQDLVDKFASE------VPQTRHELESLAGVGRKTANVVLNTAFGQP 155
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
VDTH+F + G T + + L RIP++ D + L HG+ C
Sbjct: 156 TMAVDTHIFRVGNRTGLA-TGKNVREVEDKLIARIPQDYILDAHHYLILHGRY--TC--- 209
Query: 256 GGNRQRKESAGNLCPLLNYC 275
+ R G CP+ N C
Sbjct: 210 ---KARSPECGK-CPVFNEC 225
>gi|332796258|ref|YP_004457758.1| DNA-(apurinic or apyrimidinic site) lyase [Acidianus hospitalis W1]
gi|332693993|gb|AEE93460.1| DNA-(apurinic or apyrimidinic site) lyase [Acidianus hospitalis W1]
Length = 232
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 12/177 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFP-TWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
L+ T+LSQN+T+ + KAF +L+ T ++++ + + I + IR G+ KA IK
Sbjct: 39 LIATLLSQNSTDKGTYKAFYTLEEKIGVTPDNLIKSSLEDIASCIRNIGIYRIKAERIKE 98
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
+ K +++ K L + E + EL GIG KT VL+ FPVDTH+
Sbjct: 99 LAK-IIKEKYNGDLNKILDKEPKEAREELLSLPGIGEKTADVVLLTCKGYPYFPVDTHIK 157
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCI 253
IS+ +G + ++ L + PK+ + + LL HG+ LC CI
Sbjct: 158 RISQRLGIASGSYEQISASL-MRLFDPKDY-LEAHHLLIAHGRNVCKAKNPLCEKCI 212
>gi|413936930|gb|AFW71481.1| hypothetical protein ZEAMMB73_696780 [Zea mays]
Length = 650
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 98/247 (39%), Gaps = 37/247 (14%)
Query: 59 NMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEAN--SLKAFASLKSTFPT--- 113
N+ +DK P+ DE +L L + V + N E + K + KS T
Sbjct: 94 NLVKDKYGNPV----CDENNLRKILASLRQPVTASNWKELQEEAYKKGYNNKSQTETSDV 149
Query: 114 --WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESK-GKLCLEYLRGLSIDEIK 170
WE VL A + I G A I L + +++ G L++LR +S ++ K
Sbjct: 150 VDWESVLNAPFSEVAKCIAIRGQHNILAVRILAFLDHVKKAQDGSFDLDWLRFVSREKAK 209
Query: 171 AELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWV----------------P 214
L GIG K+ C+ + L+ FPVD +V I +GWV P
Sbjct: 210 KFLLSIHGIGVKSADCICLLSLRHRAFPVDVNVARIVTRLGWVKLQPLNGADFHLIDLYP 269
Query: 215 TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNY 274
D + I KE ++L+CL+ T GK+ C KK N CP
Sbjct: 270 ILDDVQRYLWPRLCTIDKEKLYELHCLMITFGKVV--CRKKNPN-------CGACPFSAS 320
Query: 275 CEKSNKT 281
C+ N +
Sbjct: 321 CKYYNSS 327
>gi|167855491|ref|ZP_02478254.1| putative endonuclease [Haemophilus parasuis 29755]
gi|219870906|ref|YP_002475281.1| endonuclease III [Haemophilus parasuis SH0165]
gi|167853357|gb|EDS24608.1| putative endonuclease [Haemophilus parasuis 29755]
gi|219691110|gb|ACL32333.1| endonuclease III [Haemophilus parasuis SH0165]
Length = 211
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 22/222 (9%)
Query: 60 MTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
+TR +N P E + + + L+ +LS T+ KA A L T + +L
Sbjct: 10 LTRLRNENPHPTTELNYS---NPFELLIAVILSAQATDVGVNKATAKLYPVANTPQAILD 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ I+ GL +KA I + L+E + + + EL G+
Sbjct: 67 LGLDGLKEYIKTIGLYNSKAENIIKTCRDLIEKHNG---------EVPQTREELEALAGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL Q VDTH+F +S + P D K L + +P E K D++
Sbjct: 118 GRKTANVVLNTAFGQPTIAVDTHIFRVSNRTNFAP-GKDVVKVEEKLLKVVPDEFKVDVH 176
Query: 240 CLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G+ C + + CE KT
Sbjct: 177 HWLILHGRY--TCI------ARKPRCGS-CIIEDLCEYKEKT 209
>gi|228476833|ref|ZP_04061478.1| endonuclease III [Streptococcus salivarius SK126]
gi|387761465|ref|YP_006068442.1| endonuclease III [Streptococcus salivarius 57.I]
gi|228251407|gb|EEK10552.1| endonuclease III [Streptococcus salivarius SK126]
gi|339292232|gb|AEJ53579.1| endonuclease III [Streptococcus salivarius 57.I]
Length = 214
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 18/210 (8%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
N + E E E+ LV +LS TT+ K L + +P E + +A +E +R
Sbjct: 20 NAHGELEWETPFQLLVAVILSAQTTDKAVNKITPGLWARYPEIEDLASANLDDVEMCLRT 79
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL KA KNI+K + L G + + EL G+G KT VL
Sbjct: 80 IGLYKNKA---KNIIKT-----ARAVLMNFDG-QVPKTHKELESLPGVGRKTANVVLAEV 130
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
VDTHV +SK + VP A + L ++IPK + + G+ +
Sbjct: 131 YGIPSIAVDTHVSRVSKRLNIVPEDASVEEIEAELMKKIPKRDWIISHHRMIFFGRY--H 188
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K Q CPL +YC+ +T
Sbjct: 189 CLAKNPKCQT-------CPLQSYCKYYKET 211
>gi|57641076|ref|YP_183554.1| endonuclease III [Thermococcus kodakarensis KOD1]
gi|57159400|dbj|BAD85330.1| endonuclease III [Thermococcus kodakarensis KOD1]
Length = 246
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 81/193 (41%), Gaps = 22/193 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIR--CGGLAPTKAACIK 143
LV ++SQ + + + + L + E + + ++ +R GL TK I
Sbjct: 51 LVHCIISQRMRDEVTYRVWEELFKKYKDIETIANTPVEEMQEFLRKQGVGLWKTKGEWIV 110
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
K +LE G G D+I EL + GIG K VL + + PVDTHV
Sbjct: 111 KASKIILERYG--------GKVPDDIH-ELMKLPGIGRKCANIVLAYGFGKQAIPVDTHV 161
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRK 262
ISK +G P K +L IPKE +N + HG+ +CR N + +
Sbjct: 162 NRISKRLGLAPPRVAPEKVEEYLTALIPKEKWIYVNHAMVDHGRSICRPI-----NPKCE 216
Query: 263 ESAGNLCPLLNYC 275
E CPL +C
Sbjct: 217 E-----CPLREFC 224
>gi|15678772|ref|NP_275889.1| endonuclease III [Methanothermobacter thermautotrophicus str. Delta
H]
gi|2621835|gb|AAB85250.1| endonuclease III related protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 253
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 27/200 (13%)
Query: 75 DEGEEESVLDGLVKTVLSQNTT---EANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
D+G+ V+ G ++L+QNT+ A++L+ A++ + P +L+ + +E AIRC
Sbjct: 69 DDGDVFEVITG---SILTQNTSWDSAASALRNLAAMDALKP--HRILSLDDAELEAAIRC 123
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
G K + ++ + + +G + EL + RG+GP+T VL++
Sbjct: 124 AGFYRQKVSYLREMAGFFISLEGS-----------TPSRKELLKVRGVGPETADSVLLYA 172
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
++ +F VD + I +G + A D ++Y + + + L+ D H + R+
Sbjct: 173 YRKPEFVVDAYTRRILTHLGLI--AGD--ESYHRIKELFERSLEPDFRVFQEYHALIVRH 228
Query: 252 CIKKGGNRQRKESAGNLCPL 271
G + R G+ PL
Sbjct: 229 ----GKSYYRGRVHGDGDPL 244
>gi|448377863|ref|ZP_21560559.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Halovivax
asiaticus JCM 14624]
gi|445655807|gb|ELZ08652.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Halovivax
asiaticus JCM 14624]
Length = 153
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 160 YLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEISKAIGWVPTAAD 218
Y+R ++ EL G+GPKT CVL+F QD FPVDTHV IS+ +G P AD
Sbjct: 23 YVRETEPATVRDELLSVHGVGPKTADCVLLFAGGQDGVFPVDTHVHRISRRLGIAPPEAD 82
Query: 219 RNKTYLHLNQRIP 231
L +P
Sbjct: 83 HEGVREALEAAVP 95
>gi|390961830|ref|YP_006425664.1| hypothetical protein CL1_1673 [Thermococcus sp. CL1]
gi|390520138|gb|AFL95870.1| hypothetical protein CL1_1673 [Thermococcus sp. CL1]
Length = 238
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 79/188 (42%), Gaps = 16/188 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIR--CGGLAPTKAACIK 143
LV ++SQ + + + + L + E + + ++ +R GL TK I
Sbjct: 52 LVHCIISQRMRDEVTYRVWGELFERYRDIETIANTPVEEMQRFLRERGVGLWKTKGEWIV 111
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ +LE G G D+I EL + GIG K VL + + PVDTHV
Sbjct: 112 KASRIILEEYG--------GKVPDDIH-ELMKLPGIGRKCANIVLAYGFGKQAIPVDTHV 162
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRK 262
ISK +G P K +L + IP+E +N + HGK +C K G K
Sbjct: 163 NRISKRLGLAPPRVPPEKVEEYLRELIPREKWIYVNHAMVDHGKNICNPIRPKCGECPLK 222
Query: 263 ESAGNLCP 270
E LCP
Sbjct: 223 E----LCP 226
>gi|374340010|ref|YP_005096746.1| endonuclease III [Marinitoga piezophila KA3]
gi|372101544|gb|AEX85448.1| endonuclease III [Marinitoga piezophila KA3]
Length = 210
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS TT+ K L F T + +E I+ GL TK+ KNI
Sbjct: 35 LIAVMLSAQTTDNQVNKVTPELFKRFKTPYDFAKLNPEELEEYIKGVGLYKTKS---KNI 91
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K ++ +E G I + + EL G+G KT +L +D VDTHVF
Sbjct: 92 IKTC-----QILVEKYNG-EIPQTREELMELPGVGRKTANVILSVAFGKDAIAVDTHVFR 145
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
++ IG + A D KT L + IPK L + L HG RN K +
Sbjct: 146 VANRIG-LANAKDVKKTEEDLMKVIPKNLWGQAHHWLIYHG---RNICKA------RNPK 195
Query: 266 GNLCPLLNYCEKSNK 280
++CP+ C+ + K
Sbjct: 196 CDICPIKELCDYNQK 210
>gi|240103334|ref|YP_002959643.1| Endonuclease III (nth) [Thermococcus gammatolerans EJ3]
gi|239910888|gb|ACS33779.1| Endonuclease III (nth) [Thermococcus gammatolerans EJ3]
Length = 230
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 80/193 (41%), Gaps = 22/193 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIR--CGGLAPTKAACIK 143
L+ ++SQ + + + + L + E + + +R GL TK I
Sbjct: 44 LIHCIISQRMRDEVTYRVWEELFKKYGDIETIANTPVDEMREFLRKRGVGLWKTKGEWIV 103
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ +LE G G D+IK EL + GIG K VL + + PVDTHV
Sbjct: 104 KASRIILEKYG--------GKVPDDIK-ELMKLPGIGRKCANIVLAYGFGRQAIPVDTHV 154
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRK 262
ISK +G P K +L + IPKE +N + HG+ +CR R +
Sbjct: 155 NRISKRLGLAPPRVPPEKVEEYLMELIPKEKWIYVNHAMVDHGRSICRPI------RPKC 208
Query: 263 ESAGNLCPLLNYC 275
ES CPL C
Sbjct: 209 ES----CPLKELC 217
>gi|404494240|ref|YP_006718346.1| endonuclease III-like protein [Pelobacter carbinolicus DSM 2380]
gi|77546248|gb|ABA89810.1| endonuclease III-related protein [Pelobacter carbinolicus DSM 2380]
Length = 232
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKC-IENAIRCGGLAPTK 138
+S + ++ L+QNT N A A+LK T P L A Q+ +E IR G K
Sbjct: 41 DSPFEVVIGAFLTQNTAWRNVELAIAALKKTIPLTPQALCALQRQDLEELIRPAGFFRQK 100
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A ++ CLLE K + L+ + + +++ L F+GIGP+T +L++ + F
Sbjct: 101 AQRLQLFATCLLE-KHQGDLDAMLSGPLSQVRQTLLTFKGIGPETADSILLYAGHRPSFV 159
Query: 199 VDTHVFEISKAIG 211
VD + + K G
Sbjct: 160 VDAYTRRLFKRYG 172
>gi|153956018|ref|YP_001396783.1| hypothetical protein CKL_3410 [Clostridium kluyveri DSM 555]
gi|219856358|ref|YP_002473480.1| hypothetical protein CKR_3015 [Clostridium kluyveri NBRC 12016]
gi|146348876|gb|EDK35412.1| Hypothetical protein CKL_3410 [Clostridium kluyveri DSM 555]
gi|219570082|dbj|BAH08066.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 219
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LS T+ K L + T E +L+ ++ + I+ G +K+ I
Sbjct: 33 LVSTILSAQCTDVRVNKVTRELYKEYNTPEKMLSLTEEELGEKIKSCGFFRSKSKHILEA 92
Query: 146 LKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
+ +LES KG+ + + EL++ G+G KT VL VDTHVF
Sbjct: 93 SRVILESHKGE----------VPKTMEELTKLSGVGRKTANVVLSNAFGIPAIAVDTHVF 142
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKES 264
+S +G + +K L + IP+ + D + L HG+L C + RK
Sbjct: 143 RVSNRLG-IAIGNTPDKVEKELMKNIPESMWSDTHHYLIWHGRLI--C------KSRKPD 193
Query: 265 AGNLCPLLNYCEKSN 279
N CPL+ +C+ N
Sbjct: 194 CEN-CPLVPWCQYFN 207
>gi|296537039|ref|ZP_06899028.1| DNA-(apurinic or apyrimidinic site) lyase [Roseomonas cervicalis
ATCC 49957]
gi|296262634|gb|EFH09270.1| DNA-(apurinic or apyrimidinic site) lyase [Roseomonas cervicalis
ATCC 49957]
Length = 217
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS T+ + KA A+L T E +LA ++ + IR GL +KA + +
Sbjct: 33 LVAVALSAQATDVSVNKATATLFPLADTPEKMLALGEEGVGEHIRRIGLWKSKAKNVIAL 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + +A L G+G KT VL ++ VDTH+F
Sbjct: 93 SRLLIERHGG---------QVPADRAALEALPGVGRKTANVVLNVAFGEEAMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ G P R L +R+P EL D + L HG+
Sbjct: 144 LGNRTGLAPGKTPR-AVEDALMRRVPPELLRDAHHWLILHGR 184
>gi|341583175|ref|YP_004763667.1| endonuclease III [Thermococcus sp. 4557]
gi|340810833|gb|AEK73990.1| endonuclease III [Thermococcus sp. 4557]
Length = 238
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG--LAPTKAACIK 143
LV ++SQ + + K + L + + + ++ +R G L TK I
Sbjct: 52 LVHCIISQRMRDEVTYKVWERLFEKYGDIHRIADTPVEEMQEFLRKNGVGLWKTKGEWIV 111
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ +LE G G D+IK EL + GIG K VL + + PVDTHV
Sbjct: 112 KASQIILEKYG--------GKVPDDIK-ELMKLPGIGRKCANIVLAYGFGRQAIPVDTHV 162
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
ISK +G P K +L + IP E +N + HGK +CR
Sbjct: 163 NRISKRLGLAPPRVQPEKVEEYLAELIPYEKWIYVNHAMVDHGKSICR 210
>gi|154249096|ref|YP_001409921.1| endonuclease III [Fervidobacterium nodosum Rt17-B1]
gi|154153032|gb|ABS60264.1| endonuclease III [Fervidobacterium nodosum Rt17-B1]
Length = 221
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
E+ L+ T+LSQ + + N+ A L +P E + A+ + + I+ GL K
Sbjct: 33 EKDAYKVLITTILSQRSRDENTEVASKQLFEKYPNVESIANAKPEELYELIKPAGLYREK 92
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A I + K LLE + L EL G+G KT VL Q
Sbjct: 93 AERIIIVSKILLEKYDGVVPNKLE---------ELLELPGVGRKTANIVLHVSFDQAALA 143
Query: 199 VDTHVFEISKAIGWVPT 215
VDTHV IS +GWV T
Sbjct: 144 VDTHVHRISNRLGWVKT 160
>gi|322390807|ref|ZP_08064317.1| endonuclease III domain protein [Streptococcus parasanguinis ATCC
903]
gi|321142477|gb|EFX37945.1| endonuclease III domain protein [Streptococcus parasanguinis ATCC
903]
Length = 207
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 6/167 (3%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
++ LV T+L Q TTE N+ A A L T E +LA + ++ IR G K+ I
Sbjct: 30 IEDLVSTILIQRTTEKNAKLALAGLMDVM-TVEGILALPLEELQERIRPAGFFKQKSQTI 88
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ +L L E G E+L + ++++ L +GIGP+T +L++ + F D +
Sbjct: 89 RGLLTWLREVGG---FEFLARIGTEDLRKLLLELKGIGPETADALLLYLFDRPVFISDEY 145
Query: 203 VFEISKAIGW--VPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ + +G+ T D + Y ++ + + + +++ ++ HGK
Sbjct: 146 ARRLFRRLGFGNFDTYNDMHAVYGNVLEGLTLKQCQEIHAVIDEHGK 192
>gi|260881026|ref|ZP_05893288.1| endonuclease III [Mitsuokella multacida DSM 20544]
gi|260850209|gb|EEX70216.1| endonuclease III [Mitsuokella multacida DSM 20544]
Length = 239
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 90/203 (44%), Gaps = 39/203 (19%)
Query: 86 LVKTVLSQNTTE----ANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAAC 141
L+ +LS T+ + + FA +KS E ++A +EN IR GL KA
Sbjct: 52 LIAVILSAQCTDKRVNVTTKRLFAKVKSP----EDIVAMGLPTLENEIRDCGLFRNKA-- 105
Query: 142 IKNILK-CLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
KNIL C + LC E+ G D+ +A L R G+G KT V+ VD
Sbjct: 106 -KNILAACQM-----LCTEF-GGEVPDDFEA-LQRLPGVGRKTANVVMSVAFHHPAIAVD 157
Query: 201 THVFEISK----AIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG-KLCRNCIKK 255
THVF I+ A G P A ++ L + IPKE D + L HG K+C+
Sbjct: 158 THVFRIANRLQLATGSTPLAVEQG-----LMKNIPKEKWSDAHHWLIWHGRKICKA---- 208
Query: 256 GGNRQRKESAGNLCPLLNYCEKS 278
++ A ++CPL C +
Sbjct: 209 ------RKPACDICPLAPVCPSA 225
>gi|146337321|ref|YP_001202369.1| DNA-(apurinic or apyrimidinic site) lyase [Bradyrhizobium sp. ORS
278]
gi|146190127|emb|CAL74119.1| endonuclease III DNA-(apurinic or apyrimidinic site) lyase
[Bradyrhizobium sp. ORS 278]
Length = 277
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA L + T + +LA + + + I+ GL TKA KN+
Sbjct: 100 LVAVVLSAQATDAGVNKATRPLFAVADTPQKMLALGEDTVRDYIKTVGLFRTKA---KNV 156
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ KL E+ G + +AEL G G KT VL + VDTHVF
Sbjct: 157 IAL----SQKLIAEF--GGEVPRTRAELESLPGAGRKTANVVLNMAFGEHTMAVDTHVFR 210
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ G P + L L + IP E + L HG+
Sbjct: 211 VGNRTGLAPGKTPL-EVELGLEKVIPAEFMLHAHHWLILHGR 251
>gi|14591284|ref|NP_143362.1| endonuclease III [Pyrococcus horikoshii OT3]
gi|3257923|dbj|BAA30606.1| 222aa long hypothetical endonuclease III [Pyrococcus horikoshii
OT3]
Length = 222
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L++ ++SQ + + + L +PT E + +A + ++N ++ K ++
Sbjct: 38 LIRCIISQRNRDEVTDRVSEELFKRYPTIESIASASVEEMQNFLKS-----LKVGLWRSK 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K ++E+ ++ L+ G D+ + EL + GIG K VL + PVDTHV+
Sbjct: 93 GKWIVET-SRIILKKYNGRVPDKFE-ELIKLPGIGRKCANIVLAYGFGIPAIPVDTHVYR 150
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
IS+ +G P A + L IP+E +N + HGK
Sbjct: 151 ISRRLGLAPWDASPEEVEERLKSLIPREEWIYVNHAMVDHGK 192
>gi|307268732|ref|ZP_07550100.1| endonuclease III [Enterococcus faecalis TX4248]
gi|306514860|gb|EFM83407.1| endonuclease III [Enterococcus faecalis TX4248]
Length = 215
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 18/193 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA L + FPT E + AA I I+ GL KA KNI
Sbjct: 34 LIAVILSAQATDVSVNKATPGLFAAFPTPEALAAAPVDEIIAKIKTIGLYRNKA---KNI 90
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
C + LE G + + + EL G+G KT V+ + F VDTHV
Sbjct: 91 KAC-----AQQLLERFNG-EVPQTRDELVSLPGVGRKTANVVMGDAFGEPAFAVDTHVER 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+SK + A+ + L +++PKEL + + G+ +C+ + +
Sbjct: 145 VSKRLRICKLNANVTEVEQTLMRKVPKELWVKTHHTMIFFGRY--HCLARAPKCEA---- 198
Query: 266 GNLCPLLNYCEKS 278
CPLL C++
Sbjct: 199 ---CPLLYMCQEG 208
>gi|330836808|ref|YP_004411449.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
gi|329748711|gb|AEC02067.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
Length = 224
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 19/195 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L++ +LS TT+A LK L T+P + A+ ++ IR G TKA ++I
Sbjct: 39 LIQVILSAQTTDAQVLKIAPVLFETYPDVRSLAGADINKVKEIIRSTGHFNTKA---RHI 95
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ C L+ G I EL+ G+G KT +CVL Q VDTH
Sbjct: 96 IDC------ATILQKTYGGWIPSTMEELTALPGVGRKTASCVLGEVYGQPVIIVDTHFGR 149
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S+ + V T+A + + +P ++++ + L G RNC RK
Sbjct: 150 VSQRLELV-TSARPEIIEQQMKELLPPDMQYRFSMTLNLFG---RNCCTA-----RKPQC 200
Query: 266 GNLCPLLNYCEKSNK 280
N CPL C K
Sbjct: 201 HN-CPLYALCPWPEK 214
>gi|419953251|ref|ZP_14469396.1| endonuclease III [Pseudomonas stutzeri TS44]
gi|387969843|gb|EIK54123.1| endonuclease III [Pseudomonas stutzeri TS44]
Length = 212
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 85/206 (41%), Gaps = 29/206 (14%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ K A L T E + A + I+ GL P+KA
Sbjct: 28 SPFELLIAVILSAQATDVGVNKVTARLFPVANTPEAIYALGYDGLCEYIKTIGLYPSKAK 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + L+E G + + + +L G+G KT VL +Q VD
Sbjct: 88 NVIETCRILVEKHGS---------QVPDNREDLEALPGVGRKTANVVLNTAFRQFTMAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKK 255
TH+F +S G P K L + ++ +PKE D + L HG+ +C
Sbjct: 139 THIFRVSNRTGIAP-----GKNVLEVERKLIKFVPKEYLLDAHHWLILHGRYVC------ 187
Query: 256 GGNRQRKESAGNLCPLLNYCEKSNKT 281
+ RK G+ C + + CE +KT
Sbjct: 188 ---KARKPQCGS-CRIEDLCEYKHKT 209
>gi|91974861|ref|YP_567520.1| endonuclease III [Rhodopseudomonas palustris BisB5]
gi|91681317|gb|ABE37619.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Rhodopseudomonas palustris BisB5]
Length = 258
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 84/196 (42%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T++ KA +L + T + +LA ++ + + I+ GL TKA KN+
Sbjct: 80 LVAVVLSAQATDSGVNKATRALFAVADTPQKMLALGEERVRDYIKTIGLFRTKA---KNV 136
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ KL ++ G + +AEL G G KT VL Q VDTHVF
Sbjct: 137 IAL----SQKLITDF--GGEVPSTRAELETLPGAGRKTANVVLNMAFGQPTMAVDTHVFR 190
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ G P L L + IP E + L HG+ C+ + + R E
Sbjct: 191 VGNRTGLAPGDTPL-AVELALERMIPPEFMQHAHHWLILHGRY--TCLAR---KPRCE-- 242
Query: 266 GNLCPLLNYCEKSNKT 281
+CP+ + C KT
Sbjct: 243 --VCPINDLCRWPEKT 256
>gi|337279297|ref|YP_004618769.1| endonuclease III [Ramlibacter tataouinensis TTB310]
gi|334730374|gb|AEG92750.1| Candidate endonuclease III [Ramlibacter tataouinensis TTB310]
Length = 216
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 10/172 (5%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E SV + L +LS T+ KA L T + +LA + +E IR GL
Sbjct: 23 ELEYTSVFELLAAVLLSAQATDVGVNKATRRLFPVAGTPQAMLALGLERLEGYIRTIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA + + L+E G + + EL G+G KT VL +
Sbjct: 83 RTKARNLMETCRLLVERHGG---------RVPRTREELEALPGVGRKTANVVLNVAFGEP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
VDTH+F +S G P + + L L +R+P + + L HG+
Sbjct: 134 TMAVDTHIFRVSNRTGLAP-GKNPLEVELELIRRVPPAYAVNAHHWLILHGR 184
>gi|163785187|ref|ZP_02179872.1| endonuclease III [Hydrogenivirga sp. 128-5-R1-1]
gi|159879544|gb|EDP73363.1| endonuclease III [Hydrogenivirga sp. 128-5-R1-1]
Length = 218
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T++S T + + KA L S T E + ++ I I G KA IK+I
Sbjct: 39 LISTIISLRTKDEVTAKASKRLFSVAKTPEEISKLSEEKIAELIYPAGFYKNKAKTIKDI 98
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K+ LE G D ++ +L +F+G+G KT VL + VD HV
Sbjct: 99 --------SKIILEKYNGKVPDTLE-KLLKFKGVGRKTANLVLSEGFNKPAICVDIHVHR 149
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS +G+V T KT L +++P++ +N LL G+ +C+
Sbjct: 150 ISNRLGFVKTKTPE-KTEFALMEKLPEKYWNKINKLLVGFGQTICKPV----------SP 198
Query: 265 AGNLCPLLNYCEKSN 279
+ CP+ N C+K N
Sbjct: 199 YCSKCPVENLCKKKN 213
>gi|422696813|ref|ZP_16754764.1| endonuclease III [Enterococcus faecalis TX1346]
gi|315174673|gb|EFU18690.1| endonuclease III [Enterococcus faecalis TX1346]
Length = 215
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 18/193 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA L + FPT E + AA + I I+ GL KA KNI
Sbjct: 34 LIAVILSAQATDVSVNKATPGLFAAFPTPEALAAAPVEEIIAKIKTIGLYRNKA---KNI 90
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
C + LE G + + + EL G+G KT V+ + F VDTHV
Sbjct: 91 KAC-----AQQLLERFNG-EVPQTRDELVSLPGVGRKTANVVMGDVFGEPAFAVDTHVER 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+SK + A+ + L +++PKEL + + G+ +C+ + +
Sbjct: 145 VSKRLRICKLNANVTEVEQTLMRKVPKELWVKTHHTMIFFGRY--HCLARAPKCEA---- 198
Query: 266 GNLCPLLNYCEKS 278
CPLL C++
Sbjct: 199 ---CPLLYMCQEG 208
>gi|169622792|ref|XP_001804804.1| hypothetical protein SNOG_14622 [Phaeosphaeria nodorum SN15]
gi|160704856|gb|EAT77814.2| hypothetical protein SNOG_14622 [Phaeosphaeria nodorum SN15]
Length = 221
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 30/152 (19%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
PYP PT EEC+ D L LH ++V + N DE
Sbjct: 90 PYPDFGHPTPEECQIAHDVLYKLHN---------------------DAVEAEFN--DENT 126
Query: 79 EES---VLDGLVKTVLSQNTTEANSLKAFASLKSTFPT---WEHVLAAEQKCIENAIRCG 132
E+ VLD ++ VLSQ T+ +N+ +A S+K+T+ + ++ + + + +++ IRCG
Sbjct: 127 PETIPFVLDAMLVAVLSQATSWSNAKRAMNSMKATYGSVFAYDAIFSGGPEKLQDTIRCG 186
Query: 133 -GLAPTKAACIKNILKCLLESKGKLCLEYLRG 163
GL K I +IL+ + G+ L++L G
Sbjct: 187 YGLHIRKTKIIFSILEDVKARYGRWNLDHLLG 218
>gi|365882443|ref|ZP_09421671.1| endonuclease III DNA-(apurinic or apyrimidinic site) lyase
[Bradyrhizobium sp. ORS 375]
gi|365289219|emb|CCD94202.1| endonuclease III DNA-(apurinic or apyrimidinic site) lyase
[Bradyrhizobium sp. ORS 375]
Length = 282
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA L + T + +LA + + + I+ GL TKA KN+
Sbjct: 105 LVAVVLSAQATDAGVNKATRPLFAVADTPQKMLALGEDTVRDYIKTVGLYRTKA---KNV 161
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ KL E+ G + +AEL G G KT VL + VDTHVF
Sbjct: 162 IAL----SQKLIAEF--GGEVPRTRAELESLPGAGRKTANVVLNMAFGEHTMAVDTHVFR 215
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ G P + L L + IP E + L HG+
Sbjct: 216 VGNRTGLAPGKTPL-EVELGLEKVIPAEFMLHAHHWLILHGR 256
>gi|340398994|ref|YP_004728019.1| putative endonuclease III [Streptococcus salivarius CCHSS3]
gi|338742987|emb|CCB93495.1| putative endonuclease III (DNA-(apurinic or apyrimidinic site)
lyase) [Streptococcus salivarius CCHSS3]
Length = 214
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 88/210 (41%), Gaps = 18/210 (8%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
N + E E E+ LV +LS TT+ K L + +P E + +A +E +R
Sbjct: 20 NAHGELEWETPFQLLVAVILSAQTTDKAVNKITPGLWARYPEIEDLASANLDDVEMCLRT 79
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL KA KNI+K + L G + + + EL G+G KT VL
Sbjct: 80 IGLYKNKA---KNIIKT-----ARAVLMNFDG-QVPKTRKELESLPGVGRKTANVVLAEV 130
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
VDTHV +SK + P A + L ++IPK+ + + G+ +
Sbjct: 131 YGIPSIAVDTHVSRVSKRLNIAPEDASVEEIEAELMKKIPKKDWIISHHRMIFFGRY--H 188
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K Q CPL +YC+ +T
Sbjct: 189 CLAKNPKCQT-------CPLQSYCKYYKET 211
>gi|456063690|ref|YP_007502660.1| Endonuclease III [beta proteobacterium CB]
gi|455440987|gb|AGG33925.1| Endonuclease III [beta proteobacterium CB]
Length = 219
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 23/202 (11%)
Query: 60 MTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
+ R+ N P EY S + L+ +LS T+ + K L T + +L
Sbjct: 13 LLRENNPHPETELEYS-----SPFELLIAVLLSAQATDISVNKGTRKLFKIANTPQALLD 67
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ ++ I+ GL +K I+ + L+E G + + + EL G+
Sbjct: 68 LGEEGVKPYIQHIGLFNSKGRHIQETCRLLIEKHGG---------EVPQNREELEALPGV 118
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT +L Q VDTH+F +S G P D K L +RIPKE D +
Sbjct: 119 GRKTANVILNTAFGQPTMAVDTHIFRVSNRTGLAP-GKDVLKVEEQLIKRIPKEFMQDAH 177
Query: 240 CLLYTHGKL--------CRNCI 253
L HG+ C CI
Sbjct: 178 HWLILHGRYTCKARNPDCEQCI 199
>gi|350562631|ref|ZP_08931464.1| endonuclease III [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349778970|gb|EGZ33319.1| endonuclease III [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 216
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 93/232 (40%), Gaps = 32/232 (13%)
Query: 54 QRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPT 113
+R + R+ N P EY S + LV +LS T+ +A L + T
Sbjct: 6 RRAIYERLREHNPAPTTELEY-----RSPFELLVAVILSAQATDVGVNRATRGLFAVANT 60
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
E +L +++ IR GL +KA I + LL G + +A L
Sbjct: 61 PEALLRLGLDGLKSHIRTIGLYNSKAENILKTAEILLRDHGG---------EVPRDRAAL 111
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRI--- 230
G+G KT VL + VDTH+F ++ G P KT L + +++
Sbjct: 112 EALPGVGRKTANVVLNTAFGEPTIAVDTHIFRVANRTGLAP-----GKTPLEVERKLLRF 166
Query: 231 -PKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
P E + D + L HG+ C R R+ G C +++ CE +KT
Sbjct: 167 TPAEFRKDAHHWLILHGRY--TC------RARRPLCGR-CVIVDLCEFRDKT 209
>gi|118577076|ref|YP_876819.1| EndoIII-related endonuclease [Cenarchaeum symbiosum A]
gi|118195597|gb|ABK78515.1| EndoIII-related endonuclease [Cenarchaeum symbiosum A]
Length = 277
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 17/169 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T + ++ K L + + T + A + +E ++ G K+ I +
Sbjct: 37 LIGTILSARTRDESTTKVVKELFARYKTPRELARARHRDVERIVKPIGFYRVKSRRIMEV 96
Query: 146 LKCLLESKGKLC---LEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ + G LE L GL G+G KT CVL++ ++ PVD H
Sbjct: 97 ARIIDTKYGGRVPDDLETLVGLP------------GVGRKTANCVLVYAFEKPAIPVDIH 144
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
V IS +G V T +T L +++PK +N + +G+ +C+
Sbjct: 145 VHRISNRLGLVDTRTP-EETEAALTKKVPKRHWLHVNDIFVMYGQNICK 192
>gi|18312246|ref|NP_558913.1| DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth)
[Pyrobaculum aerophilum str. IM2]
gi|7141250|gb|AAF37269.1|AF222334_1 putative DNA glycosylase [Pyrobaculum aerophilum]
gi|18159688|gb|AAL63095.1| DNA-(apurinic or apyrimidinic site) lyase (endonuclease III, PaNth)
[Pyrobaculum aerophilum str. IM2]
Length = 223
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 94/191 (49%), Gaps = 13/191 (6%)
Query: 67 VPLDMNEYDEG----EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTW--EHVLAA 120
V L +NE+ E+++ LV VLSQNT++ N+ KA +L+ T + +L
Sbjct: 12 VELRLNEFIAPVVWRREKNLFKMLVAVVLSQNTSDKNAFKALENLEKQVGTITPQALLEL 71
Query: 121 EQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIG 180
+ +E I+ G+ +A +K + + ++ L E L + + + L G+G
Sbjct: 72 PIEALEELIKPAGMYRQRARNLKALAEAFIQL--GLTPERLVEMGPERARELLLSLPGVG 129
Query: 181 PKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNC 240
KT A V++ +L FPVDTH+ I+K G + ++ ++ +R+P++ D +
Sbjct: 130 KKT-ADVVLVNLGLPAFPVDTHITRIAKRWGIGEKYDEISRWFM---ERLPRDKYLDFHL 185
Query: 241 LLYTHGK-LCR 250
L G+ +CR
Sbjct: 186 KLIQFGRDVCR 196
>gi|319956678|ref|YP_004167941.1| DNA-(apurinic or apyrimidinic site) lyase [Nitratifractor
salsuginis DSM 16511]
gi|319419082|gb|ADV46192.1| DNA-(apurinic or apyrimidinic site) lyase [Nitratifractor
salsuginis DSM 16511]
Length = 218
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 74/166 (44%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T + +L+A L + T E +L ++ I I G KAA I +
Sbjct: 39 LISTLLSFQTRDEVTLEAGKRLFALADTPEAMLGLSEEEIARTIYPVGFWRKKAAGILEV 98
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G + +EL+ +GIGPKT VL Q VDTHV
Sbjct: 99 TRTLLERHGG---------EVPSTLSELTAIKGIGPKTAKIVLENAYGQSVAAVDTHVHR 149
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
I +G V TA+ P ELK LN LL + G+ +CR
Sbjct: 150 ILNLLGVVETASPEATDKALEGLLEPGELK-GLNKLLVSFGQAICR 194
>gi|398875557|ref|ZP_10630728.1| endonuclease III [Pseudomonas sp. GM67]
gi|398885581|ref|ZP_10640490.1| endonuclease III [Pseudomonas sp. GM60]
gi|398192306|gb|EJM79464.1| endonuclease III [Pseudomonas sp. GM60]
gi|398206914|gb|EJM93671.1| endonuclease III [Pseudomonas sp. GM67]
Length = 212
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS +T+ KA A L T + + A + + I+ GL +KA
Sbjct: 28 SPFELLISVILSAQSTDVGVNKATAKLYPVANTPQAIYALGVEGLSEYIKTIGLFNSKAK 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + L+E G + + + EL G+G KT VL +Q VD
Sbjct: 88 NVIETCRLLVERHGG---------EVPQTREELEALPGVGRKTANVVLNTAFRQLTMAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S G P + + L + +PKE D + L HG+ C+
Sbjct: 139 THIFRVSNRTGIAP-GKNVVEVEKKLMKFVPKEYLLDSHHWLILHGRYV--CL------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPRCGS-CRIEDLCEYKHKT 209
>gi|407461561|ref|YP_006772878.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045183|gb|AFS79936.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus koreensis AR1]
Length = 215
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T + ++ K L S + + + A+ K +E I+ G K+ I +
Sbjct: 37 LIGTILSARTKDESTTKVVKILFSKYKNPKQLANAKLKDVEKIIKPIGFYHVKSKRIIEV 96
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K +++SK K + E L G+G KT CVL++ ++ PVD HV
Sbjct: 97 AK-IIDSKYKG--------KVPEDLETLVELPGVGRKTANCVLVYAFEKPAIPVDIHVHR 147
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS IG V T + +T L ++I K+ D+N +G+ +C+
Sbjct: 148 ISNRIGLVDT-KNPEETEQELMKKIDKKFWIDINDTFVMYGQNICK 192
>gi|149183171|ref|ZP_01861619.1| endonuclease III [Bacillus sp. SG-1]
gi|148849106|gb|EDL63308.1| endonuclease III [Bacillus sp. SG-1]
Length = 216
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 26/202 (12%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
D ++ +LS T+ K +L + T E L+ + ++ IR GL KA I
Sbjct: 31 FDLVIAVLLSAQCTDVLVNKVTKTLFEKYKTPEDYLSVSLEELQQDIRSIGLYRNKAKNI 90
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+++ + LLE EY G + + + EL + G+G KT V+ + VDTH
Sbjct: 91 RSLCELLLE-------EY--GGEVPQSRDELVKLPGVGRKTANVVVSVAFGEPALAVDTH 141
Query: 203 VFEISKAIG---WVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNR 259
V +SK +G W + + KT L ++IP+E D TH +L I G
Sbjct: 142 VERVSKRLGICRWKDSVLEVEKT---LMRKIPREKWTD------THHRL----IFFGRYH 188
Query: 260 QRKESAG-NLCPLLNYCEKSNK 280
+ +S +CPLL+ C + K
Sbjct: 189 CKAQSPQCEICPLLHLCREGQK 210
>gi|421616877|ref|ZP_16057878.1| endonuclease III [Pseudomonas stutzeri KOS6]
gi|409781107|gb|EKN60711.1| endonuclease III [Pseudomonas stutzeri KOS6]
Length = 212
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 83/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + IR GL P+KA +
Sbjct: 33 LIAVILSAQATDVGVNKATARLFPVANTPEAIYALGYDGLCEYIRSIGLYPSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + +L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILIEKHGS---------QVPDNREDLEALPGVGRKTANVVLNTAFRQFTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S P K L + ++ +PKE D + L HG+ +C +
Sbjct: 144 VSNRTNIAP-----GKNVLEVERKLIRFVPKEYLLDAHHWLILHGRYVC---------KA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPLCGS-CRIEDLCEYKHKT 209
>gi|398944702|ref|ZP_10671410.1| endonuclease III [Pseudomonas sp. GM41(2012)]
gi|398157884|gb|EJM46253.1| endonuclease III [Pseudomonas sp. GM41(2012)]
Length = 212
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 27/205 (13%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS +T+ KA A L T + A + + I+ GL +KA
Sbjct: 28 SPFELLISVILSAQSTDVGVNKATAKLYPVANTPAAIYALGVEGLSEYIKTIGLFNSKAK 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + L+E G + + + EL G+G KT VL +Q VD
Sbjct: 88 NVIETCRLLMERHGG---------EVPQTREELEALPGVGRKTANVVLNTAFRQLTMAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGKLCRNCIKKG 256
TH+F +S G P K + + Q+ +PKE D + L HG+ C+
Sbjct: 139 THIFRVSNRTGIAP-----GKNVVEVEQKLMKFVPKEYLLDSHHWLILHGRYV--CL--- 188
Query: 257 GNRQRKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE KT
Sbjct: 189 ---ARKPRCGS-CRIEDLCEYKQKT 209
>gi|325275201|ref|ZP_08141168.1| endonuclease III [Pseudomonas sp. TJI-51]
gi|324099688|gb|EGB97567.1| endonuclease III [Pseudomonas sp. TJI-51]
Length = 212
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS +T+ KA A L T E + A + + I+ GL +KA +
Sbjct: 33 LVAVTLSAQSTDVGVNKATARLFPVANTPEAIYALGVEGLSEYIKTIGLYNSKAKNVIEA 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + L G+G KT VL +Q VDTH+F
Sbjct: 93 CRLLIERHGS---------QVPQTREALEALPGVGRKTANVVLNTAFRQPTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P KT L + ++ +PK+ D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKTVLEVEKKLVKFVPKDYLLDAHHWLILHGRYVC---------QA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPRCGS-CRIEDLCEYKHKT 209
>gi|10640069|emb|CAC11921.1| endonuclease III related protein [Thermoplasma acidophilum]
Length = 197
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 79/191 (41%), Gaps = 21/191 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLSQ T + + +A SL + + + A+ + I G K+ + I
Sbjct: 15 LITTVLSQRTKDETTDEAARSLYEKYRDIDGLADADPDEVGRIISKVGFWRVKSRKVVEI 74
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ + + Y SIDE L G+G KT VL + VDTHVF
Sbjct: 75 ARIIRDR-----YNYRVPDSIDE----LVSLPGVGLKTAKVVLAEGFNRPAIAVDTHVFR 125
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS IGW +A +T L + IP +L+ N ++ GK +CR
Sbjct: 126 ISHRIGW-SSARTPEETSEELERIIPVDLQVGFNPMMVEFGKAICRPV----------RP 174
Query: 265 AGNLCPLLNYC 275
+ CP+ YC
Sbjct: 175 LCDRCPVSEYC 185
>gi|157364361|ref|YP_001471128.1| endonuclease III [Thermotoga lettingae TMO]
gi|157314965|gb|ABV34064.1| endonuclease III [Thermotoga lettingae TMO]
Length = 217
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LSQ T + N+ KA L +FP + A+ I + I+ G+ KA I +
Sbjct: 33 LIATILSQRTKDENTDKASKKLFESFPDVYSLSMAKPSQIYDLIKASGMYRQKAERIIKV 92
Query: 146 LKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
+ ++E GK+ LS+ G+G KT VL Q VDTHV
Sbjct: 93 SQIIVEKFNGKIPANLHDLLSLP----------GVGRKTANIVLYHCFCQPALAVDTHVH 142
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKES 264
IS +G+V T +T L + IP++ +N + GK + C+ + Q
Sbjct: 143 RISNRLGFVKTKTPE-QTEEGLKKIIPEKFWGPINGAMVEFGK--KVCLPRKPKCQE--- 196
Query: 265 AGNLCPLLNYCEKSN 279
CP+ YCE N
Sbjct: 197 ----CPVNKYCEYFN 207
>gi|51893925|ref|YP_076616.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
gi|51857614|dbj|BAD41772.1| endonuclease III [Symbiobacterium thermophilum IAM 14863]
Length = 235
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 78/191 (40%), Gaps = 21/191 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV TVLS T+A A + + EH A I IR GL +KA I+ +
Sbjct: 35 LVATVLSAQCTDARVNIVTARIFPRYNRPEHFAALSVDEIGEMIRDCGLWKSKAKNIQGL 94
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G + EL + G+G KT VL VDTHVF
Sbjct: 95 SQMLLEKHGG---------EVPSTMEELIQLPGVGRKTANVVLSNAFGIPAIAVDTHVFR 145
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
++ +G + A +T L +RIP+E + L HG+ +C +
Sbjct: 146 VANRLG-LAEAKTPEETERQLMERIPREYWSQAHHWLIYHGRQVC----------HARNP 194
Query: 265 AGNLCPLLNYC 275
+ CPLL +C
Sbjct: 195 QCSQCPLLPHC 205
>gi|395240700|ref|ZP_10417731.1| DNA-(Apurinic or apyrimidinic site) lyase [Lactobacillus gigeriorum
CRBIP 24.85]
gi|394475860|emb|CCI87708.1| DNA-(Apurinic or apyrimidinic site) lyase [Lactobacillus gigeriorum
CRBIP 24.85]
Length = 215
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 89 TVLSQNTTEANSLKAFASLKST---FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
TVL QNT N KA L PT +LA K E AI+ G KA +K++
Sbjct: 35 TVLIQNTNWKNVAKAMVDLDHATGFLPT--KILALTNKEPEQAIKSAGFYTRKAQTLKSL 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LE + + D+++ E+ +GIGP+T +LM+ L + +F VD +
Sbjct: 93 ATYF--ASYNFDLEQMTMMPKDQLRKEILSLKGIGPETADVILMYALNKGEFVVDVYARR 150
Query: 206 ISKAIGW 212
+ +G+
Sbjct: 151 LFTCLGY 157
>gi|432328581|ref|YP_007246725.1| putative endoIII-related endonuclease [Aciduliprofundum sp.
MAR08-339]
gi|432135290|gb|AGB04559.1| putative endoIII-related endonuclease [Aciduliprofundum sp.
MAR08-339]
Length = 209
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 77/192 (40%), Gaps = 21/192 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TV+SQ T + + L +P + A I I G KA IK I
Sbjct: 30 LIATVISQRTKDEVTYSVAERLFEKYPDPSSLKNAPVDEIARLIYPAGFYKQKARKIKEI 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ + E + L EL + G+G KT VL QD VD HV
Sbjct: 90 ARIIDEEYDGVVPRTL---------DELLKLPGVGRKTANIVLSRCFDQDVIAVDVHVHR 140
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS +GWV T +T L + +PK+ ++N LL G+ +CR K
Sbjct: 141 ISNRLGWVSTRTP-EETERELMKILPKKYWREINELLVMFGRTICRPVGPKCDE------ 193
Query: 265 AGNLCPLLNYCE 276
CP+ ++C+
Sbjct: 194 ----CPVSDFCD 201
>gi|114319970|ref|YP_741653.1| DNA-(apurinic or apyrimidinic site) lyase/endonuclease III
[Alkalilimnicola ehrlichii MLHE-1]
gi|114226364|gb|ABI56163.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Alkalilimnicola ehrlichii MLHE-1]
Length = 211
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 81/196 (41%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS T+ + KA A L T E +L ++ +++ IR GL +KAA I
Sbjct: 33 LVAVALSAQATDVSVNKATARLFPVANTPEAILELGEEGLKDYIRHIGLYNSKAANIIKT 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G + + L G+G KT +L + VDTH+F
Sbjct: 93 CRILLERHGG---------EVPRDRKALEALPGVGRKTANVILNTAFGEPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S G P R + L + +P E K D + L HG+ C+ RK
Sbjct: 144 VSNRTGLAPGNTVR-QVEDKLIRVVPDEFKRDAHHWLILHGRY--TCV------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G C + + CE +K
Sbjct: 195 GA-CVIEDLCEFPDKV 209
>gi|71027073|ref|XP_763180.1| endonuclease III [Theileria parva strain Muguga]
gi|68350133|gb|EAN30897.1| endonuclease III, putative [Theileria parva]
Length = 418
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 16/191 (8%)
Query: 62 RDKNSVPLDMNE----YDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHV 117
R+K P+D+ D GE LV +LS T + + +LK T +++
Sbjct: 209 RNKEIAPVDLYGCHCVADPGEHFE-FQTLVGCMLSSQTKDEITALTMKNLKKRGLTLDNI 267
Query: 118 LAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFR 177
L +++ +++ I G TKA IK + L + G + K +L
Sbjct: 268 LKMDEEELDSIISKVGFHKTKAKNIKKAAQILKDQYGG---------KVPSNKKDLESLP 318
Query: 178 GIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF 236
GIGPK +L D VD HV I+ +GWV T +T L L + +PK+L
Sbjct: 319 GIGPKMANLILQVAFNMVDGVAVDIHVHRITNRLGWVKTKTPE-ETSLKLQELLPKDLWS 377
Query: 237 DLNCLLYTHGK 247
+N LL G+
Sbjct: 378 KINPLLVGFGQ 388
>gi|408403428|ref|YP_006861411.1| endonuclease III [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408364024|gb|AFU57754.1| putative endonuclease III [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 223
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T + N+ + L + F T + + +A+ I+ I G KA IK +
Sbjct: 38 LIGTILSARTRDENTTRVVNKLFARFKTPQDLASADIDEIKKIIHSIGFYNIKAERIKQV 97
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+ G G +I + L + G+G KT CVL++ + PVD HV
Sbjct: 98 SQMLISKFG--------GRVPSDIDS-LLKLPGVGRKTANCVLVYAFDKPAIPVDVHVHR 148
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
IS +G V T +T L++ + ++L +N +G+
Sbjct: 149 ISNRLGLVSTKTP-EQTEQDLSKLVDRKLWTKVNDTFVMYGQ 189
>gi|291288305|ref|YP_003505121.1| DNA-(apurinic or apyrimidinic site) lyase [Denitrovibrio
acetiphilus DSM 12809]
gi|290885465|gb|ADD69165.1| DNA-(apurinic or apyrimidinic site) lyase [Denitrovibrio
acetiphilus DSM 12809]
Length = 219
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ ++S T + +L A L + T E +L I I G TK+ I NI
Sbjct: 40 LISCLISLRTKDEVTLAASNRLFAKADTPEKMLTIPADEIAKLIYPAGFYKTKSNTITNI 99
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LL+ EY G DEI EL + +G+G KT V++ +D VDTHV
Sbjct: 100 CRILLD-------EY-DGKVPDEID-ELLKLKGVGRKTANLVVVEGYGRDAICVDTHVHR 150
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I +G+V T +KT + L + +P + +N +L ++G+
Sbjct: 151 IFNRLGYVATKTP-DKTEMELRKHLPIKYWIRINEILVSYGR 191
>gi|403238043|ref|ZP_10916629.1| endonuclease III [Bacillus sp. 10403023]
Length = 219
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 24/198 (12%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
++ LS T+A K ASL + T E LA + ++N IR GL KA I+ +
Sbjct: 34 VIAVSLSAQCTDALVNKVTASLFEKYKTPEDYLAVSLEELQNDIRSIGLYRNKAKNIQKL 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G + + + + EL++ G+G KT V+ VDTHV
Sbjct: 94 CQMLLEDYGGI---------LPQDRDELTKLPGVGRKTANVVVSVAFGIPAIAVDTHVER 144
Query: 206 ISKAIG---WVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRK 262
+SK +G W + + KT L +++PKE + + G+ +C K N Q
Sbjct: 145 VSKRLGFCRWKDSVLEVEKT---LMKKVPKEEWSATHHRMIFFGRY--HC--KAQNPQ-- 195
Query: 263 ESAGNLCPLLNYCEKSNK 280
+CPLL C + K
Sbjct: 196 ---CEICPLLEVCREGKK 210
>gi|330811337|ref|YP_004355799.1| DNA lyase [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
gi|423698896|ref|ZP_17673386.1| endonuclease III [Pseudomonas fluorescens Q8r1-96]
gi|327379445|gb|AEA70795.1| DNA-(apurinic or apyrimidinic site) lyase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|387996602|gb|EIK57932.1| endonuclease III [Pseudomonas fluorescens Q8r1-96]
Length = 212
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS +T+ KA A L T E + A + + I+ GL +KA
Sbjct: 28 SPFELLIAVILSAQSTDVGVNKATAKLFPVANTPEAIYALGVEGLSEYIKTIGLFNSKAK 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + L+E G + + + L G+G KT VL +Q VD
Sbjct: 88 NVIETCRLLIERHGS---------EVPQTREALEALPGVGRKTANVVLNTAFRQLTMAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S G P + + L + +PKE D + L HG+ C+
Sbjct: 139 THIFRVSNRTGLAP-GKNVVEVEKKLMKFVPKEFLLDSHHWLILHGRYV--CL------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPRCGS-CRIEDLCEYKHKT 209
>gi|253688406|ref|YP_003017596.1| endonuclease III [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|251754984|gb|ACT13060.1| endonuclease III [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 211
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 19/195 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T E +LA +++ I+ GL +KA +N+
Sbjct: 33 LIAVLLSAQATDVSVNKATAKLYPVANTPETLLALGVDGVKDYIKTIGLFNSKA---ENV 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K +L LE +G + E +A L G+G KT VL VDTH+F
Sbjct: 90 IKTC-----RLLLEKHQG-QVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S G+ P + + L + +P E K D + L HG+ CI RK
Sbjct: 144 VSNRTGFAP-GKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNK 280
G+ C + + CE K
Sbjct: 195 GS-CLIEDLCEFGEK 208
>gi|56478210|ref|YP_159799.1| endonuclease III [Aromatoleum aromaticum EbN1]
gi|56314253|emb|CAI08898.1| Endonuclease III [Aromatoleum aromaticum EbN1]
Length = 210
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 18/188 (9%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E S LV VLS T+ + A L + PT E +L+ ++ + +R GL
Sbjct: 23 ELEYGSPFQLLVAVVLSAQATDKSVNLATRELFAVAPTPEAMLSLGEENVTERLRSIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA + + + LLE G + + L G+G KT + VL +
Sbjct: 83 RNKAKNVVALSRLLLERHGG---------DVPRSREALEALPGVGRKTASVVLNIVFGEA 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL------- 248
VDTH+F ++ G P D L +R+PKE + + L HG+
Sbjct: 134 VMAVDTHIFRVANRTGLAP-GKDVLAVEQALMRRVPKEYLHNAHHWLILHGRYVCTARKP 192
Query: 249 -CRNCIKK 255
C++C+ +
Sbjct: 193 RCKDCLVR 200
>gi|418402700|ref|ZP_12976207.1| endonuclease III [Sinorhizobium meliloti CCNWSX0020]
gi|359503357|gb|EHK75912.1| endonuclease III [Sinorhizobium meliloti CCNWSX0020]
Length = 263
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 76 EGEEESV--LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
EGE E V +V LS T+A KA L + T E +LA ++ + + I+ G
Sbjct: 53 EGELEHVNPFTLVVAVALSAQATDAGVNKATRQLFAVADTPEKMLALGEERVRDYIKTIG 112
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L KA KN++ KL ++ G + + EL G+G KT VL
Sbjct: 113 LYRNKA---KNVIAL----SEKLITDF--GGEVPRTREELVTLPGVGRKTANVVLSMAFG 163
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
Q VDTH+F I+ I P ++ HL + IP+ F + L HG+
Sbjct: 164 QPTMAVDTHIFRIANRIRLAPGKTP-DEVEAHLLRVIPEHYLFHAHHWLILHGR 216
>gi|261339608|ref|ZP_05967466.1| endonuclease III [Enterobacter cancerogenus ATCC 35316]
gi|288318430|gb|EFC57368.1| endonuclease III [Enterobacter cancerogenus ATCC 35316]
Length = 211
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 92/222 (41%), Gaps = 22/222 (9%)
Query: 60 MTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
+TR +N P E + S + L+ +LS T+ + KA A L T E +LA
Sbjct: 10 LTRLRNENPHPTTELNF---TSPFELLIAVLLSAQATDVSVNKATALLYPVANTPEAMLA 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
+ +++ I+ GL +KA + + LLE G + E +A L G+
Sbjct: 67 LGVEGVKSYIKTIGLFNSKAENVIKTCRILLEQHGG---------EVPEDRAALEALPGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL VDTH+F +S + P + + L + +P E K D +
Sbjct: 118 GRKTANVVLNTAFGWPTIAVDTHIFRVSNRTNFAP-GKNVEQVEEKLLKVVPAEFKVDCH 176
Query: 240 CLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G+ C + + CE K
Sbjct: 177 HWLILHGRY--TCI------ARKPRCGS-CIIEDLCEYKEKV 209
>gi|307352991|ref|YP_003894042.1| endonuclease III [Methanoplanus petrolearius DSM 11571]
gi|307156224|gb|ADN35604.1| endonuclease III [Methanoplanus petrolearius DSM 11571]
Length = 215
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 86 LVKTVLSQNTTE--ANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
LV T+LS TT+ NS+K L S +P + A+Q+ +E I+ G KA
Sbjct: 36 LVMTILSAQTTDNMVNSVK--DDLFSKYPDPAALSQAKQEDVETIIKKTGFFRAKA---- 89
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTH 202
K ++ES LC ++ G + EL G+G KT VL D+ VDTH
Sbjct: 90 ---KNIIESSKILCSDF--GGEVPRTMEELVTLPGVGRKTANIVLNHAFGIDEGIAVDTH 144
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL--------CRNCIK 254
V +S IG + D K + L PK+ +N LL +HG+ C C+
Sbjct: 145 VKRVSWRIG-LTDNTDPVKIEMDLTALFPKDAWGKMNYLLISHGRAICTARKPDCERCVI 203
Query: 255 KGGNRQRKE 263
K R +E
Sbjct: 204 KDFCRYFRE 212
>gi|161527564|ref|YP_001581390.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrosopumilus maritimus
SCM1]
gi|160338865|gb|ABX11952.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrosopumilus maritimus
SCM1]
Length = 218
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T + ++ K L S + + + A+ K +E I+ G K+ I +
Sbjct: 39 LIGTILSARTKDESTTKVVKVLFSKYKNPKQLANAKLKDVEKIIKSIGFYHVKSKRIIEV 98
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K +++SK K + E L + G+G KT CVL++ ++ PVD HV
Sbjct: 99 AK-IIDSKYKG--------KVPEDLDTLVQLPGVGRKTANCVLVYAFEKPAIPVDIHVHR 149
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS +G V T + +T L +++ K+ D+N +G+ +C+
Sbjct: 150 ISNRLGLVET-KNPEETEQELMKKVDKKFWIDINDTFVMYGQNICK 194
>gi|289192102|ref|YP_003458043.1| HhH-GPD family protein [Methanocaldococcus sp. FS406-22]
gi|288938552|gb|ADC69307.1| HhH-GPD family protein [Methanocaldococcus sp. FS406-22]
Length = 222
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 14/185 (7%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKS-TFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
E+ + +V +L+QNT+ N KA +LK+ E +L ++ ++ I+ G K
Sbjct: 29 ETRYEVVVGAILTQNTSWKNVEKAINNLKNENLLDEEKILNVDEDKLKELIKPAGFYNLK 88
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEI--KAELSRFRGIGPKTVACVLMFHLQQDD 196
A +KN+ K ++++ G E + D + +AEL G+G +T +L++ L ++
Sbjct: 89 AKRLKNVTKFIVDNYGNT--EEMAKTDKDTLTLRAELLSINGVGKETADSILLYALDRES 146
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTHGK------- 247
F VD + + +G + A ++ + +PK+L+ + + L+ H K
Sbjct: 147 FVVDAYTKRMFSRLGIINEKAKYDEIKEIFEKSLPKDLEIYKEYHALIVEHCKKFCRKKP 206
Query: 248 LCRNC 252
LC NC
Sbjct: 207 LCDNC 211
>gi|209966040|ref|YP_002298955.1| endonuclease III [Rhodospirillum centenum SW]
gi|209959506|gb|ACJ00143.1| endonuclease III, putative [Rhodospirillum centenum SW]
Length = 228
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 21/197 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A +A +L + T ++A + I IR GL TKAA + +
Sbjct: 33 LVAVVLSAQATDAGVNRATRTLFAVADTPAAMVALGEDGIREHIRTIGLYRTKAANVFRL 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE+ G + + EL G+G KT VL + VDTH+F
Sbjct: 93 SQILLETHGG---------EVPRRREELEALPGVGRKTANVVLNVAFGEPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
++ G P L + +P + + L HG+ +C+ +
Sbjct: 144 VANRTGLAPGKTP-EAVEQGLLKVVPGAWRLHAHHWLILHGRYVCKA----------RRP 192
Query: 265 AGNLCPLLNYCEKSNKT 281
LCP+ + C +KT
Sbjct: 193 DCPLCPVRDLCAFPDKT 209
>gi|408382845|ref|ZP_11180386.1| HhH-GPD family protein [Methanobacterium formicicum DSM 3637]
gi|407814383|gb|EKF85010.1| HhH-GPD family protein [Methanobacterium formicicum DSM 3637]
Length = 229
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKS---TFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
++ T+L+QNT ++ KA +LK+ P E +L + + ++NA+R G K+ +
Sbjct: 60 ILGTILTQNTAWTSAEKALENLKNLDVIHP--ERLLLLDDEILKNAVRPAGFLNQKSVYL 117
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+NI + L KGK ++E+ +G+G +T +L++ ++ +F VD +
Sbjct: 118 RNISQFFLSLKGK-----------TPARSEILEVKGVGNETADSILLYAYRKPEFVVDAY 166
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
I +G V D TY+ L + L D+ H + +
Sbjct: 167 TKRIFSNLGLV----DEKITYMDLKKFFENNLPVDVPIYQEYHALIVEHA 212
>gi|423093915|ref|ZP_17081711.1| endonuclease III [Pseudomonas fluorescens Q2-87]
gi|397888622|gb|EJL05105.1| endonuclease III [Pseudomonas fluorescens Q2-87]
Length = 212
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 23/203 (11%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS +T+ KA A L T E + A + + I+ GL +KA
Sbjct: 28 SPFELLIAVILSAQSTDVGVNKATAKLFPVANTPETIYALGVEGLSEYIKTIGLFNSKAK 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + L+E G I + + L G+G KT VL +Q VD
Sbjct: 88 NVIETCRLLIERHGG---------EIPQTREALEALPGVGRKTANVVLNTAFRQLTMAVD 138
Query: 201 THVFEISKAIGWVP--TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
TH+F +S G P + K L +PKE D + L HG+ C+
Sbjct: 139 THIFRVSNRTGLAPGKNVVEVEKKLLKF---VPKEFLLDSHHWLILHGRYV--CL----- 188
Query: 259 RQRKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 189 -ARKPRCGS-CRIEDLCEYKHKT 209
>gi|378952456|ref|YP_005209944.1| hypothetical protein PSF113_4559 [Pseudomonas fluorescens F113]
gi|359762470|gb|AEV64549.1| Nth [Pseudomonas fluorescens F113]
Length = 212
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS +T+ KA A L T E + A + + I+ GL +KA
Sbjct: 28 SPFELLISVILSAQSTDVGVNKATARLYPVANTPETIHALGVEGLSEYIKTIGLFNSKAK 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + L+E G + + + L G+G KT VL +Q VD
Sbjct: 88 NVIETCRLLIERHGS---------EVPQTREALEALPGVGRKTANVVLNTAFRQLTMAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S G P + + L + +PKE D + L HG+ C+
Sbjct: 139 THIFRVSNRTGLAP-GKNVVEVEKKLMKFVPKEFLLDSHHWLILHGRYV--CL------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPRCGS-CRIEDLCEYKHKT 209
>gi|413963156|ref|ZP_11402383.1| endonuclease III [Burkholderia sp. SJ98]
gi|413928988|gb|EKS68276.1| endonuclease III [Burkholderia sp. SJ98]
Length = 214
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 10/179 (5%)
Query: 69 LDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENA 128
L+ + E E + + L+ +LS T+ + KA + T VLA ++ +
Sbjct: 16 LNPHPVTELEYTTPFELLIAVMLSAQATDVSVNKAMRKMFPVANTPATVLALGEEGVAEY 75
Query: 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
IR GL TKA + + L+E G + + + L G+G KT VL
Sbjct: 76 IRTIGLYRTKAKNVIATCRMLVEQHGG---------EVPDNREALEALPGVGRKTANVVL 126
Query: 189 MFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
Q VDTH+F ++ G P D L + PKE D + L HG+
Sbjct: 127 NIAFGQPSIAVDTHIFRVANRTGLAP-GKDVRAVETALEKFTPKEFLHDAHHWLILHGR 184
>gi|56808324|ref|ZP_00366085.1| COG0177: Predicted EndoIII-related endonuclease [Streptococcus
pyogenes M49 591]
gi|209559276|ref|YP_002285748.1| endonuclease III [Streptococcus pyogenes NZ131]
gi|209540477|gb|ACI61053.1| Endonuclease III [Streptococcus pyogenes NZ131]
Length = 218
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 26/210 (12%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E + E+ L+ +LS TT+ K L ++P E + AE +ENA+R GL
Sbjct: 25 ELDWETPFQLLIAVILSAQTTDKAVNKVTPGLWQSYPEIEDLAFAELSDVENALRTIGLY 84
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA KNI+K + + +G + + EL G+G KT VL
Sbjct: 85 KNKA---KNIIKT-----AQAIRDDFKG-QVPKTHKELESLPGVGRKTANVVLAEVYGVP 135
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC----RN 251
VDTHV +SK + + AD + L +IPK+ + TH +L +
Sbjct: 136 AIAVDTHVARVSKRLNISSSDADVKQIEADLMAKIPKK------DWIITHHRLIFFGRYH 189
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K+ +CP+ +YC+ T
Sbjct: 190 CLA-------KKPKCEICPVQSYCKYYQNT 212
>gi|323137137|ref|ZP_08072216.1| endonuclease III [Methylocystis sp. ATCC 49242]
gi|322397495|gb|EFY00018.1| endonuclease III [Methylocystis sp. ATCC 49242]
Length = 229
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 18/166 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA +L + T E ++A + + AI+ GL +KA + +
Sbjct: 52 LVAVVLSAQATDAGVNKATPALFAMADTAEKMVALGEDRVREAIKTIGLFRSKAKNVVAL 111
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + EL+ G+G KT VL Q VDTH+F
Sbjct: 112 SQLLIERHGG---------DVPRTREELTALPGVGRKTANVVLNIAYHQPVIAVDTHIFR 162
Query: 206 ISK----AIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+S A G P A + L +P+E + L HG+
Sbjct: 163 VSNRLPLAKGATPEAVEAG-----LESIVPEEYLLHAHHWLILHGR 203
>gi|448369885|ref|ZP_21556338.1| HhH-GPD family protein [Natrialba aegyptia DSM 13077]
gi|445650325|gb|ELZ03249.1| HhH-GPD family protein [Natrialba aegyptia DSM 13077]
Length = 276
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 8/154 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-----KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L S + AAEQ + I GL K+
Sbjct: 64 LVRTILSQNTSDKASQPAHDALIDRYGGSDVDLAAELAAAEQSQLAETISSAGLYNQKSE 123
Query: 141 CIKNILKCLLESKGKLCLEYLRGL--SIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
I + + + G + E++ L RG+GPKT CVL+F + F
Sbjct: 124 MIIGAAEWVCDEFGSAAAFDAFVADEAPGEVRETLLDVRGVGPKTADCVLLFAGGRGGVF 183
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
PVDTHV I + +G P AD + +P
Sbjct: 184 PVDTHVHRIYRRLGIAPPDADHEDVREVVEDEVP 217
>gi|398989592|ref|ZP_10692829.1| endonuclease III [Pseudomonas sp. GM24]
gi|399015076|ref|ZP_10717352.1| endonuclease III [Pseudomonas sp. GM16]
gi|398109087|gb|EJL99026.1| endonuclease III [Pseudomonas sp. GM16]
gi|398147214|gb|EJM35929.1| endonuclease III [Pseudomonas sp. GM24]
Length = 212
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 29/206 (14%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASL--KSTFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
S + L+ +LS +T+ KA A L + P H L E + I+ GL +K
Sbjct: 28 SPFELLIAVILSAQSTDVGVNKATAKLFPVANTPAAIHALGVEG--LSEYIKTIGLYNSK 85
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A + + L+E G + + + + EL G+G KT VL +Q
Sbjct: 86 AKNVIETCRLLVERHGSV---------VPQTREELEALPGVGRKTANVVLNTAFRQLTMA 136
Query: 199 VDTHVFEISKAIGWVP---TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
VDTH+F +S G P NK L + +PKE D + L HG+ C+
Sbjct: 137 VDTHIFRVSNRTGIAPGKNVVEVENK----LMKFVPKEFLLDSHHWLILHGRYV--CL-- 188
Query: 256 GGNRQRKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 189 ----ARKPRCGS-CRIEDLCEYKDKT 209
>gi|385260156|ref|ZP_10038305.1| base excision DNA repair protein, HhH-GPD family [Streptococcus sp.
SK140]
gi|385192076|gb|EIF39486.1| base excision DNA repair protein, HhH-GPD family [Streptococcus sp.
SK140]
Length = 207
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
L+ LV T+L Q TTE N+ A A L T E +L + ++ IR G K+ I
Sbjct: 30 LEDLVSTILIQRTTEKNAKLALAGLMDIM-TVEGILELSLEDLQERIRPAGFFKQKSQTI 88
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
K +L L E+ G E L + ++++ +L +GIGP+T +L++ + F D +
Sbjct: 89 KGLLIWLRENGG---FEVLARIGTEDLRKKLLELKGIGPETADALLLYLFDRPVFISDEY 145
Query: 203 VFEISKAIG 211
+ + +G
Sbjct: 146 ARRLFRRLG 154
>gi|304385734|ref|ZP_07368078.1| deoxyribonuclease (pyrimidine dimer) [Pediococcus acidilactici DSM
20284]
gi|304328238|gb|EFL95460.1| deoxyribonuclease (pyrimidine dimer) [Pediococcus acidilactici DSM
20284]
Length = 209
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 13/136 (9%)
Query: 71 MNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF---PTWEHVLAAEQKCIEN 127
+ E+ E E V G +L QNT+ N + + SLK F P + +L + ++
Sbjct: 27 LEEWQETPWEVVYGG----ILVQNTSWRNVVPSLNSLKLNFNFNP--KLILELSDEELQQ 80
Query: 128 AIRCGGLAPTKAACIKNILKCLLESKG-KLCLEYLRGLSIDEIKAELSRFRGIGPKTVAC 186
+R G KAA IKNIL+ +KG + ++ L+ +++AEL G+GP+T
Sbjct: 81 NVRPSGFYTRKAAAIKNILQW---AKGYDFSVLRIQNLTSSQLRAELLALHGVGPETADY 137
Query: 187 VLMFHLQQDDFPVDTH 202
V+M+ + F D +
Sbjct: 138 VMMYAFEHAGFIADKY 153
>gi|407791811|ref|ZP_11138890.1| endonuclease III [Gallaecimonas xiamenensis 3-C-1]
gi|407199132|gb|EKE69155.1| endonuclease III [Gallaecimonas xiamenensis 3-C-1]
Length = 211
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + LV LS T+ KA A L T + + +++ I+ GL KA
Sbjct: 28 SPFELLVAVTLSAQATDVGVNKATAKLFPVANTPQAIWDLGVDGLKDYIKTIGLFNAKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + + LL+ G + E + L G+G KT VL VD
Sbjct: 88 NVHKMCRILLDQHGG---------EVPESREALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S + P D L + +PKE K D++ L HG+ CI
Sbjct: 139 THIFRVSNRTKFAP-GKDVRAVEDRLEKVVPKEFKVDVHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPRCGS-CIIEDLCEFKDKT 209
>gi|317153228|ref|YP_004121276.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2]
gi|316943479|gb|ADU62530.1| HhH-GPD family protein [Desulfovibrio aespoeensis Aspo-2]
Length = 219
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 6/174 (3%)
Query: 87 VKTVLSQNTTEANSLKAFASLKS-TFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
V +L+QNT N KA A+LK+ + + A + + IR G KAA ++N
Sbjct: 34 VGAILTQNTNWRNVEKAIANLKARDLLSARAMHALDTGELAELIRPAGYYNIKAARLRNF 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L L + G +E L+ +DE+++++ G+GP+T +L++ L+ F VD + +
Sbjct: 94 LNFLNDEAG-FEIESLKTQGMDELRSKVLSINGVGPETADSILLYALEMPTFVVDAYTYR 152
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTHGKLCRNCIKKGG 257
+ G D + +P+++ + + L+ GK C KK G
Sbjct: 153 MMDRHGLAHEGIDYHGLRSIFMDALPEDVSLYNEFHALIVRVGK--DWCRKKAG 204
>gi|383757390|ref|YP_005436375.1| endonuclease III Nth [Rubrivivax gelatinosus IL144]
gi|381378059|dbj|BAL94876.1| endonuclease III Nth [Rubrivivax gelatinosus IL144]
Length = 214
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 10/172 (5%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E SV + L +LS T+A KA L + PT + +L + + IR GL
Sbjct: 23 ELEFTSVFELLCAVLLSAQATDAGVNKATKRLFALAPTPQRMLDLGLEQVTELIRTIGLF 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA + + L+E G ++ + L G+G KT VL +
Sbjct: 83 RTKAKNLVQTCRILVEQHGG---------AVPRSREALEALPGVGRKTANVVLNVAFGEP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
VDTH+F ++ G P + L L +R+P + D + L HG+
Sbjct: 134 TMAVDTHIFRVANRTGLAP-GKNPLAVELKLLERVPAKYAVDAHHWLILHGR 184
>gi|126178987|ref|YP_001046952.1| endonuclease III [Methanoculleus marisnigri JR1]
gi|125861781|gb|ABN56970.1| DNA-(apurinic or apyrimidinic site) lyase [Methanoculleus
marisnigri JR1]
Length = 218
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 27/198 (13%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
+ L+ T+LS TT+ L S +PT E + AE + +E IR G KA
Sbjct: 33 FETLILTILSAQTTDRAVNAVRDDLFSRYPTPEALARAEPEEVEPLIRTIGFHHAKA--- 89
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD-DFPVDT 201
+ ++ + KL E+ G + EL G+G KT VL + VDT
Sbjct: 90 ----RYIVGAARKLVAEF--GGEVPRTMEELQTLPGVGRKTANIVLSHAFDINVGIAVDT 143
Query: 202 HVFEISKAIGWV----PTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRN----- 251
HV +SK +G+ P +R+ L P+E+ D+N LL HG+ +C
Sbjct: 144 HVRRVSKRLGFTDSTNPDIIERDLVAL-----FPEEVWRDINYLLIRHGRAVCTAKNPKH 198
Query: 252 --CIKKGGNRQRKESAGN 267
C+ G R +E +G
Sbjct: 199 EVCVVAGLCRYYREFSGG 216
>gi|448104103|ref|XP_004200201.1| Piso0_002778 [Millerozyma farinosa CBS 7064]
gi|359381623|emb|CCE82082.1| Piso0_002778 [Millerozyma farinosa CBS 7064]
Length = 364
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 20/182 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFP--------TWEHVLAAEQKCIENAIRCGGLAPT 137
LV +LS T + + A +L T E VL + ++ I G
Sbjct: 139 LVSLILSSQTKDEVTYNAMVNLNRHLMDRGFEDGLTLEAVLTLSEAEVDGLISKVGFHRK 198
Query: 138 KAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ-QDD 196
KAA I L E+ G + ++DEI +R G+GPK ++ D
Sbjct: 199 KAAYILKSAAILKETAGSDVPQ-----TVDEI----TRLPGVGPKMAYLLIQRGWNINDG 249
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKG 256
VD HV +++ WVP + +T L L +PK+ ++N LL G++ C+ +
Sbjct: 250 IGVDVHVHRLAQMWRWVPKSDSPERTRLALQAWLPKKFWPEINPLLVGFGQVV--CVPRA 307
Query: 257 GN 258
GN
Sbjct: 308 GN 309
>gi|254780383|ref|YP_003064796.1| endonuclease III [Candidatus Liberibacter asiaticus str. psy62]
gi|254040060|gb|ACT56856.1| endonuclease III [Candidatus Liberibacter asiaticus str. psy62]
Length = 227
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 18/176 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
+V +LS +T+ N KA L T + +LA +K ++N IR G+ K+ I ++
Sbjct: 52 IVAVLLSAQSTDVNVNKATKHLFEIADTPQKMLAIGEKKLQNYIRTIGIYRKKSENIISL 111
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L+ + L GL+ R GIG K +L VDTH+F
Sbjct: 112 SHILINEFDNKIPQTLEGLT---------RLPGIGRKGANVILSMAFGIPTIGVDTHIFR 162
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL--------CRNCI 253
IS IG P NK L + IP + +++ + L HG+ C++CI
Sbjct: 163 ISNRIGLAP-GKTPNKVEQSLLRIIPPKHQYNAHYWLVLHGRYVCKARKPQCQSCI 217
>gi|339484768|ref|YP_004696554.1| endonuclease III [Nitrosomonas sp. Is79A3]
gi|338806913|gb|AEJ03155.1| endonuclease III [Nitrosomonas sp. Is79A3]
Length = 210
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E S + L+ +LS T+ + A L T E +LA + + I+ GL
Sbjct: 23 ELEYRSPFELLIAVILSAQATDKSVNLATRKLFPQANTPEKILALGEASLTEFIKSIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA KNIL + +L +++ R + + +L + G+G KT +L +
Sbjct: 83 KTKA---KNIL-----ATCQLLMQHHRS-EVPRTREQLEKLPGVGRKTANVILNTAFGEP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
VDTH+F ++ G P + + L L + +PKE + D + L HG+
Sbjct: 134 TIAVDTHIFRVANRTGIAP-GKNVLEVELKLLKVVPKEFRLDAHHWLILHGR 184
>gi|295697115|ref|YP_003590353.1| endonuclease III [Kyrpidia tusciae DSM 2912]
gi|295412717|gb|ADG07209.1| endonuclease III [Kyrpidia tusciae DSM 2912]
Length = 233
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 79/190 (41%), Gaps = 19/190 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LS T+ L + FPT E + +E I+ GL TK+ I +
Sbjct: 32 LVATILSAQCTDERVNLVTGPLFAKFPTAEDFARLSPEELEPHIQSCGLYKTKSKNIVSA 91
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E EY G + + + L G+G KT + VL VDTHVF
Sbjct: 92 CRILVE-------EY--GGQVPKSREALQALPGVGRKTASVVLSNAFGVPAIAVDTHVFR 142
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
++ +G + A +T L +RIPK + L HG+ + G +R
Sbjct: 143 VANRLG-LADATTPEETERQLMKRIPKAKWSAAHHWLIHHGRQICSARSPGCDR------ 195
Query: 266 GNLCPLLNYC 275
CPL YC
Sbjct: 196 ---CPLSRYC 202
>gi|398850623|ref|ZP_10607324.1| endonuclease III [Pseudomonas sp. GM80]
gi|398248446|gb|EJN33860.1| endonuclease III [Pseudomonas sp. GM80]
Length = 212
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 23/203 (11%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASL--KSTFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
S + L+ +LS +T+ KA A L + P H L E + I+ GL +K
Sbjct: 28 SPFELLIAVILSAQSTDVGVNKATAKLFPVANTPAAIHALGVEG--LSEYIKTIGLYNSK 85
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A + + L+E G + + + EL G+G KT VL +Q
Sbjct: 86 AKNVIETCRLLVERHGS---------EVPQTREELEALPGVGRKTANVVLNTAFRQLTMA 136
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
VDTH+F +S G P + + L + +PKE D + L HG+ C+
Sbjct: 137 VDTHIFRVSNRTGIAP-GKNVVEVEKKLMKFVPKEFLLDSHHWLILHGRYV--CL----- 188
Query: 259 RQRKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 189 -ARKPRCGS-CRIEDLCEYKDKT 209
>gi|289208913|ref|YP_003460979.1| HhH-GPD family protein [Thioalkalivibrio sp. K90mix]
gi|288944544|gb|ADC72243.1| HhH-GPD family protein [Thioalkalivibrio sp. K90mix]
Length = 216
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKS-TFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
ES + +V VL+QNT+ N +A A+L++ E +L + + IR G K
Sbjct: 25 ESAFEVMVGAVLTQNTSWTNVERAIANLRAGDVLDPESLLELPHEILAEHIRPSGYFNVK 84
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A ++++L+ L + G +E L + + +++ L +G+GP+T ++++ ++ F
Sbjct: 85 ADRLRHLLRFLEQQGG---VEALARMETEALRSALLSVKGVGPETADDIVLYAFERPVFV 141
Query: 199 VDTHVFEISKAIGWVP---TAADRNKTYLHLNQRIPKELKF-DLNCLLYTHGK------- 247
VD + + + +G +P A D + ++ ++ P F DL+ L+ HGK
Sbjct: 142 VDAYTRRLFERLG-LPHARGAYDDLRVWVE-SELGPDAQAFNDLHALIVEHGKQRCRPKP 199
Query: 248 LCRNC 252
LC+ C
Sbjct: 200 LCQGC 204
>gi|116075469|ref|ZP_01472729.1| endonuclease III [Synechococcus sp. RS9916]
gi|116067666|gb|EAU73420.1| endonuclease III [Synechococcus sp. RS9916]
Length = 217
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 27/221 (12%)
Query: 52 RNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF 111
R QR+ + P+ ++ D L+ +LS T+ + +L +
Sbjct: 6 RAQRILQRLEETYPETPIPLDHSDP------FTLLIAVLLSAQCTDKKVNEVTPALFAAG 59
Query: 112 PTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLES-KGKLCLEYLRGLSIDEIK 170
PT + A +++ I N IR GLA TKA +K + + L+ + G++ +
Sbjct: 60 PTPAAMAALDEETILNHIRQLGLAKTKARNVKKLAQILVTAYDGEVPASF---------- 109
Query: 171 AELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRI 230
EL G+G KT + V+ FPVDTH+ +++ G + + +T L Q
Sbjct: 110 EELEALPGVGHKTASVVMAQAFGVPAFPVDTHIHRLAQRWG-LSSGDSVQRTERDLKQLF 168
Query: 231 PKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPL 271
P+E L+ + +G+ C +G + G +CPL
Sbjct: 169 PEEAWNKLHLQIIFYGR--EYCTARGCD-------GTVCPL 200
>gi|406994421|gb|EKE13413.1| hypothetical protein ACD_13C00021G0015 [uncultured bacterium]
Length = 199
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LS T + +L+A L P E + E I I G TKA +K +
Sbjct: 30 LVSTLLSARTKDGVTLEASKRLFKIAPNLEKLNQLEINEIGKLIYPVGFYKTKAKHLKTL 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ +L S G + + + EL+ G+G KT VL VDTHV
Sbjct: 90 ARIVLTSYGG---------KVPKTQKELNTLPGVGIKTANLVLNRAFGVPAIAVDTHVHR 140
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
IS +GWV T +T L + +PK+ D+N L + G+
Sbjct: 141 ISNLLGWVHTKTP-EQTEKELIKVVPKKYWPDMNRLFVSIGR 181
>gi|145589680|ref|YP_001156277.1| endonuclease III [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145048086|gb|ABP34713.1| endonuclease III [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 219
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 75/190 (39%), Gaps = 18/190 (9%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
N E E S + L+ +LS T+ + K L T + +L ++ + I+
Sbjct: 20 NPETELEYSSPFELLIAVLLSAQATDVSVNKGTRKLFKIANTPQALLDLGEEGVRPYIQH 79
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL +K I+ + LLE + E + EL G+G KT +L
Sbjct: 80 IGLFNSKGKHIQETCRLLLEKHAG---------QVPETREELEALPGVGRKTANVILNTA 130
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL--- 248
Q VDTH+F +S G P D K L +R+PKE D + L HG+
Sbjct: 131 FGQPTMAVDTHIFRVSNRTGLAP-GKDVLKVEEQLLKRVPKEYLQDAHHWLILHGRYTCK 189
Query: 249 -----CRNCI 253
C CI
Sbjct: 190 ARSPECAQCI 199
>gi|87124068|ref|ZP_01079918.1| endonuclease III [Synechococcus sp. RS9917]
gi|86168637|gb|EAQ69894.1| endonuclease III [Synechococcus sp. RS9917]
Length = 217
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 25/220 (11%)
Query: 52 RNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF 111
R QR+ + P+ ++ D LV +LS T+ + +L +
Sbjct: 6 RAQRILERLNEHYPEPPIPLDHSDP------FTLLVAVLLSAQCTDRKVNEVTPALFAAA 59
Query: 112 PTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKA 171
PT + + A E+ I + IR GLA TKA +K + L+E + G +
Sbjct: 60 PTPQALAALEEGEILSFIRQLGLAKTKARHLKKLAHILVE---------IHGGEVPRSFE 110
Query: 172 ELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
EL G+G KT + V+ FPVDTH+ +++ G + +T L P
Sbjct: 111 ELEALPGVGHKTASVVMAQAFGVPAFPVDTHIHRLAQRWG-LSKGLSVERTEADLKALFP 169
Query: 232 KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPL 271
KE L+ + +G+ +C +G + G +CPL
Sbjct: 170 KEAWNRLHLQIIFYGR--DHCTARGCD-------GTVCPL 200
>gi|186516091|ref|NP_001119112.1| DEMETER-like protein 3 [Arabidopsis thaliana]
gi|332660917|gb|AEE86317.1| DEMETER-like protein 3 [Arabidopsis thaliana]
Length = 957
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 26/180 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W V + Q +E I+ G + I L + G + LE+LR +K L
Sbjct: 525 WSDVRLSGQNVLETTIKKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYL 584
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH-------L 226
GIG K+ CV + L+ FPVDT+V I+ +G VP N +H +
Sbjct: 585 LEIEGIGLKSAECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSM 644
Query: 227 NQ----------RIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
+ ++P+E ++L+ + T GK+ C K N N CP+ + C+
Sbjct: 645 DSIQKYLWPRLCKLPQETLYELHYQMITFGKVF--CTKTIPN-------CNACPMKSECK 695
>gi|298675584|ref|YP_003727334.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalobium
evestigatum Z-7303]
gi|298288572|gb|ADI74538.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalobium
evestigatum Z-7303]
Length = 203
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLSQ T ++ + + +L + + + ++ ++ IE+ I+ G K IK I
Sbjct: 29 LITTVLSQRTRDSVTNSSAKTLFNKYNSPNELVHTDEDEIESLIKNVGFYRVKTQRIKQI 88
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ +L+ EY G D + +L + G+G KT CVL + + VDTHV
Sbjct: 89 SEMILD-------EY-DGQVPDNLN-DLLKLPGVGRKTANCVLTYAFSKKAIAVDTHVHR 139
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS +G V T KT L + +P+ L +N L G+ CR
Sbjct: 140 ISNRLGLVETKTPE-KTEKDLKKIVPENLWNKINELFVRFGQNTCR 184
>gi|406658170|ref|ZP_11066310.1| endonuclease III [Streptococcus iniae 9117]
gi|405578385|gb|EKB52499.1| endonuclease III [Streptococcus iniae 9117]
Length = 218
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 26/194 (13%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS TT+ K L + +P E + AA +EN +R GL KA KNI
Sbjct: 35 LIAVILSAQTTDKAVNKVTPLLWAKYPEIEDLAAANLSDVENCLRTIGLYKNKA---KNI 91
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K L L+ G + + EL G+G KT VL VDTHV
Sbjct: 92 IKT-----ANLILQQFHG-ELPKTHKELESLPGVGRKTANVVLGEVYGIPGIAVDTHVAR 145
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC----RNCIKKGGNRQR 261
+SK + AD ++ L ++IPK+ + TH +L +C+ K
Sbjct: 146 VSKRLAISAQDADVSEIEADLMKKIPKK------DWVITHHRLIFFGRYHCLAKN----- 194
Query: 262 KESAGNLCPLLNYC 275
++CPL +YC
Sbjct: 195 --PKCDICPLQSYC 206
>gi|420145504|ref|ZP_14652968.1| Endonuclease III [Lactobacillus coryniformis subsp. coryniformis
CECT 5711]
gi|398402878|gb|EJN56169.1| Endonuclease III [Lactobacillus coryniformis subsp. coryniformis
CECT 5711]
Length = 216
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 26/199 (13%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
++ +LS T+ + K L FP E + AA + ++ I GL KA +K
Sbjct: 34 MISVMLSAQATDISVNKVTPKLFRDFPDPEAMAAASETALQADIHSIGLYRNKAKHMKAA 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LL+ G+ + +AEL + G+G KT VL F VDTHV
Sbjct: 94 SQALLDD--------FNGV-VPSTRAELMQLPGVGRKTADVVLADAFGIPAFAVDTHVTR 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC----RNCIKKGGNRQR 261
++K + VP A T L + QR+ K L DL + H ++ +C+ + ++
Sbjct: 145 VTKRLRMVPQKA----TVLEIEQRMMKLLPEDL--WVTAHHRMIYFGRYHCLARAPKCEQ 198
Query: 262 KESAGNLCPLLNYCEKSNK 280
CPLL+ C +
Sbjct: 199 -------CPLLSMCADGQR 210
>gi|307273846|ref|ZP_07555068.1| endonuclease III [Enterococcus faecalis TX0855]
gi|306509531|gb|EFM78579.1| endonuclease III [Enterococcus faecalis TX0855]
Length = 215
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 84/193 (43%), Gaps = 18/193 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA L + FPT E + AA + I I+ GL KA KNI
Sbjct: 34 LIAVILSAQATDVSVNKATPGLFAAFPTPEALAAAPVEEIIAKIKTIGLYRNKA---KNI 90
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
C + LE G + + + EL G+G KT V+ + F VDTHV
Sbjct: 91 KAC-----AQQLLERFNG-EVPQTRDELVSLPGVGRKTANVVMGDAFGEPAFAVDTHVER 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+SK + A+ + L +++PKEL + + G+ +C+ +
Sbjct: 145 VSKRLRICKLNANVTEVEQTLMRKVPKELWVKTHHTMIFFGRY--HCLAIAPKCEA---- 198
Query: 266 GNLCPLLNYCEKS 278
CPLL C++
Sbjct: 199 ---CPLLYMCQEG 208
>gi|312113452|ref|YP_004011048.1| endonuclease III [Rhodomicrobium vannielii ATCC 17100]
gi|311218581|gb|ADP69949.1| endonuclease III [Rhodomicrobium vannielii ATCC 17100]
Length = 252
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA +L + T E +LA + + +AI+ GL TKA + +
Sbjct: 64 LVAVVLSAQATDAGVNKATKALFAKADTPEKMLALGEDKVRDAIKTIGLFNTKARNVVAL 123
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+E+ G + + + + L G+G K+ VL + VDTH+F
Sbjct: 124 SKALVETWGGV---------VPKDRDALESLPGVGRKSANVVLNVAFGEPTIAVDTHIFR 174
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
++ G P L L + +P + + L HG+
Sbjct: 175 VANRTGLAPGKTPL-AVELGLERVVPARFALNAHHWLILHGR 215
>gi|213408176|ref|XP_002174859.1| endonuclease III-like protein [Schizosaccharomyces japonicus
yFS275]
gi|212002906|gb|EEB08566.1| endonuclease III-like protein [Schizosaccharomyces japonicus
yFS275]
Length = 361
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFP---TWEHVLAAEQKCIENAIRCGGLAPTKA 139
L LV +LS T + +LK P T E + A ++K + I G KA
Sbjct: 93 LQTLVALMLSSQTKDTVLGPTMKNLKENMPKGLTVEGLEAIDEKELNILIEKVGFHNRKA 152
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKT-VACVLMFHLQQDDFP 198
+K K L E + + GL G+GPK C+ + + D
Sbjct: 153 MYLKKTAKILKEKYDGDIPDTIEGLM---------ELPGVGPKMGYLCLGVAWNKIDGIG 203
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKG 256
VD HV IS +GWV T + +T L L +PKEL D+N +L G++ C+ +G
Sbjct: 204 VDVHVHRISNLLGWVHTKTE-EQTRLALQSWLPKELWLDVNHMLVGFGQMI--CLPRG 258
>gi|52354425|gb|AAU44533.1| hypothetical protein AT4G34060 [Arabidopsis thaliana]
Length = 1044
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 26/180 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W V + Q +E I+ G + I L + G + LE+LR +K L
Sbjct: 525 WSDVRLSGQNVLETTIKKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYL 584
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH-------L 226
GIG K+ CV + L+ FPVDT+V I+ +G VP N +H +
Sbjct: 585 LEIEGIGLKSAECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSM 644
Query: 227 NQ----------RIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
+ ++P+E ++L+ + T GK+ C K N N CP+ + C+
Sbjct: 645 DSIQKYLWPRLCKLPQETLYELHYQMITFGKVF--CTKTIPN-------CNACPMKSECK 695
>gi|367474322|ref|ZP_09473835.1| endonuclease III DNA-(apurinic or apyrimidinic site) lyase
[Bradyrhizobium sp. ORS 285]
gi|365273379|emb|CCD86303.1| endonuclease III DNA-(apurinic or apyrimidinic site) lyase
[Bradyrhizobium sp. ORS 285]
Length = 287
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 76/178 (42%), Gaps = 12/178 (6%)
Query: 72 NEYDEGEEESV--LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
N +GE E V LV VLS T+A KA L + T + +LA + + + I
Sbjct: 94 NPEPKGELEHVNPYTLLVAVVLSAQATDAGVNKATRPLFAVADTPQKMLALGEDTVRDYI 153
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
+ GL TKA KN++ L E L E+ G + +AEL G G KT VL
Sbjct: 154 KTVGLFRTKA---KNVI-ALSEM---LIAEF--GGEVPRTRAELESLPGAGRKTANVVLN 204
Query: 190 FHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ VDTHVF + G P + L L + IP E + L HG+
Sbjct: 205 MAFGEHTMAVDTHVFRVGNRTGLAPGKTPL-EVELGLEKVIPAEFMLHAHHWLILHGR 261
>gi|345303642|ref|YP_004825544.1| endonuclease III [Rhodothermus marinus SG0.5JP17-172]
gi|345112875|gb|AEN73707.1| endonuclease III [Rhodothermus marinus SG0.5JP17-172]
Length = 280
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E+ LV +LS T+A + +L + FPT E + AAE + + IR
Sbjct: 24 ELHHENPYQLLVAVMLSAQCTDARVNQVTPALFAAFPTVEALAAAEPEDVLPYIRSVSYP 83
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
+KA + + + ++ G G D ++A L G+GPKT V
Sbjct: 84 NSKARHLVAAARRIRDAFG--------GEIPDSLEA-LESLPGVGPKTARVVASVAFGVA 134
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF----DLNCLLYTHGK 247
PVDTHV+ ++ IG V R +T L + +R+ ++L + + LL HG+
Sbjct: 135 ALPVDTHVYRVAHRIGLV----RRARTPLEVERRLKRQLPARDWGEAHHLLILHGR 186
>gi|251770935|gb|EES51520.1| Endonuclease III/Nth [Leptospirillum ferrodiazotrophum]
Length = 228
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 21/214 (9%)
Query: 47 EFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFAS 106
E + + RLK+ + R K ++P + E + + LV TVLS TT+ +
Sbjct: 4 ESLAQKKDRLKNILARLKQAIP---DPRTELAFHNPFELLVATVLSAQTTDLTVNRVTPE 60
Query: 107 LKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSI 166
L + FPT + A +E +R G KA +K + + L + +
Sbjct: 61 LFARFPTPAALAEASLSELETILRPTGFFRRKAQHVKELAQALATRYQGV---------V 111
Query: 167 DEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHL 226
E EL G+G KT + VL + VDTHV +SK +G + D + L
Sbjct: 112 PETMEELVTLPGVGRKTASVVLFHGFSRPAIFVDTHVGRVSKRLGLT-ESDDPERVERDL 170
Query: 227 NQRIPKELKFDLNCLLYTHGK--------LCRNC 252
++ IP++ L HG+ LC+ C
Sbjct: 171 SELIPEKDWGIAASRLLLHGRRVCLARRPLCKTC 204
>gi|94498908|ref|ZP_01305446.1| endonuclease III [Bermanella marisrubri]
gi|94428540|gb|EAT13512.1| endonuclease III [Oceanobacter sp. RED65]
Length = 211
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 15/186 (8%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD N P EY S + LV LS T+ + KA L T E + A
Sbjct: 14 RDNNPQPETELEYS-----SPFELLVAVTLSAQATDVSVNKATRKLFPVANTPESIYALG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
++ ++ I+ GL +KA + + K L+E + E + EL G+G
Sbjct: 69 EEGLKEYIKTIGLFNSKAKNVVAMCKILMEKHNS---------QVPETRDELVALPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL Q VDTH+F +S P D + L + +PKE D +
Sbjct: 120 KTANVVLNTAFNQIAMAVDTHIFRVSNRTKIAP-GKDVLEVEKRLIRLVPKEFLMDAHHW 178
Query: 242 LYTHGK 247
L HG+
Sbjct: 179 LILHGR 184
>gi|417002349|ref|ZP_11941738.1| endonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
gi|325479490|gb|EGC82586.1| endonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
Length = 197
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 75/175 (42%), Gaps = 18/175 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LS +T+ K + + T E A+ K IEN IR G+ KA I
Sbjct: 19 LVATILSAQSTDVRVNKVTKVMFADMNTPEEFAKADIKTIENYIRTVGIYKNKAKNISAT 78
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L +Y + D IK EL + G+G KT V VDTHVF
Sbjct: 79 SKILYN-------DYNSEVPAD-IK-ELMKLPGVGRKTANVVASNAFGIPAIAVDTHVFR 129
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNC 252
++ +G + +A + KT L + IPKE + L THG+ LC C
Sbjct: 130 VANRLG-LASAKNVEKTEDQLMKNIPKERWRKTHHQLITHGRAICKARNPLCEEC 183
>gi|79496905|ref|NP_195132.3| DEMETER-like protein 3 [Arabidopsis thaliana]
gi|84028203|sp|O49498.2|DML3_ARATH RecName: Full=DEMETER-like protein 3
gi|332660916|gb|AEE86316.1| DEMETER-like protein 3 [Arabidopsis thaliana]
Length = 1044
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 26/180 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W V + Q +E I+ G + I L + G + LE+LR +K L
Sbjct: 525 WSDVRLSGQNVLETTIKKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYL 584
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH-------L 226
GIG K+ CV + L+ FPVDT+V I+ +G VP N +H +
Sbjct: 585 LEIEGIGLKSAECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSM 644
Query: 227 NQ----------RIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
+ ++P+E ++L+ + T GK+ C K N N CP+ + C+
Sbjct: 645 DSIQKYLWPRLCKLPQETLYELHYQMITFGKVF--CTKTIPN-------CNACPMKSECK 695
>gi|421452259|ref|ZP_15901620.1| Endonuclease III [Streptococcus salivarius K12]
gi|400182690|gb|EJO16952.1| Endonuclease III [Streptococcus salivarius K12]
Length = 219
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 18/210 (8%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
N + E E E+ LV +LS TT+ K L + +P E + +A +E +R
Sbjct: 25 NAHGELEWETPFQLLVAVILSAQTTDKAVNKITPGLWARYPEIEDLASANLDDVEMCLRT 84
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL KA KNI+K + L G + + EL G+G KT VL
Sbjct: 85 IGLYKNKA---KNIIKT-----ARAVLMNFDG-QVPKTHKELESLPGVGRKTANVVLAEV 135
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
VDTHV +SK + P A + L ++IPK+ + + G+ +
Sbjct: 136 YGIPSIAVDTHVSRVSKRLNIAPEDASVEEIEAELMKKIPKKDWIISHHRMIFFGRY--H 193
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K Q CPL +YC+ +T
Sbjct: 194 CLAKNPKCQT-------CPLQSYCKYYKET 216
>gi|397906310|ref|ZP_10507123.1| Endonuclease III [Caloramator australicus RC3]
gi|397160659|emb|CCJ34460.1| Endonuclease III [Caloramator australicus RC3]
Length = 208
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 21/192 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS TT+ KA A L + + + +E I+ GL TKA KNI
Sbjct: 31 LIATILSAQTTDETVNKATAELFKDYNKPHDIANLTPQELEGYIKICGLYKTKA---KNI 87
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
++ K+ +E G ++ +L + G+G KT VL +D VDTHVF
Sbjct: 88 IEA-----SKIIVEQFNG-NVPNKMEDLIKLPGVGRKTANVVLSNAFGKDAIAVDTHVFR 141
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG-KLCRNCIKKGGNRQRKES 264
++ +G + A D +T L + IPK + L HG K+C ++
Sbjct: 142 VANRLG-LANAKDVLQTEKQLMENIPKSYWSRAHHWLIWHGRKIC----------TARKP 190
Query: 265 AGNLCPLLNYCE 276
+LC L ++C+
Sbjct: 191 KCDLCKLRDFCK 202
>gi|226330222|ref|ZP_03805740.1| hypothetical protein PROPEN_04135 [Proteus penneri ATCC 35198]
gi|225201017|gb|EEG83371.1| endonuclease III [Proteus penneri ATCC 35198]
Length = 212
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 89/220 (40%), Gaps = 24/220 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD N P ++D S + L+ +LS T+ + KA A L T + +L
Sbjct: 14 RDNNPQPTTELKFD-----SPFELLISVLLSAQATDVSVNKATAKLYPVANTPQAILNLG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
++ I+ GL TKA + + L++ + E + L G+G
Sbjct: 69 VDGLKEYIKTIGLYNTKAENVIKTCQILVDKHNS---------EVPENREALEALPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL VDTH+F +S G+ P + N+ L + +P E K D +
Sbjct: 120 KTANVVLNTAFGWPTIAVDTHIFRVSNRTGFAP-GKNVNEVEQKLLKVVPAEFKVDCHHW 178
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G+ C + + CE KT
Sbjct: 179 LILHGRY--TCI------ARKPRCGS-CIIEDLCEFKEKT 209
>gi|222617989|gb|EEE54121.1| hypothetical protein OsJ_00892 [Oryza sativa Japonica Group]
Length = 1964
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 69/160 (43%), Gaps = 17/160 (10%)
Query: 84 DGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
D L K VL + + S A S+ WE + AE K I + IR G+ A IK
Sbjct: 1404 DMLRKEVLYSHGNKERSQNAKDSID-----WETIRQAEVKEISDTIRERGMNNMLAERIK 1458
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL-MFHLQQDDFP---- 198
+ L L+ G + LE+LR + D+ K L RG+G K+V C + + P
Sbjct: 1459 DFLNRLVRDHGSIDLEWLRYVDSDKAKDYLLSIRGLGLKSVECNMCEAWMGATSAPTRVS 1518
Query: 199 -------VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
VDT+V I +GWVP LHL + P
Sbjct: 1519 SVAPVGDVDTNVGRICVRLGWVPLQPLPESLQLHLLEMYP 1558
>gi|256822162|ref|YP_003146125.1| endonuclease III [Kangiella koreensis DSM 16069]
gi|256795701|gb|ACV26357.1| endonuclease III [Kangiella koreensis DSM 16069]
Length = 211
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
N E E S + L+ +LS T+ KA L T E + A + ++ I+
Sbjct: 19 NPTTELEYNSTFELLIAVILSAQATDVGVNKATRKLYPVANTPEAIYALGEDGLKEYIKT 78
Query: 132 GGLAPTKAACIKNILKC---LLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
GL +KA KN++ C L+E + I + + +L G+G KT VL
Sbjct: 79 IGLFNSKA---KNVISCCKDLIEKHNSV---------IPDNRKDLEALAGVGRKTANVVL 126
Query: 189 MFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL 248
+Q VDTH+F +S P R + L + +PKE D + L HG+
Sbjct: 127 NTAFRQPAMAVDTHIFRVSNRTKIAPGKNVR-QVEEKLLKFVPKEFLLDAHHWLILHGRY 185
Query: 249 CRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ RK G+ C + + CE +KT
Sbjct: 186 --TCL------ARKPRCGS-CIIEDLCEFKDKT 209
>gi|154488115|ref|ZP_02029232.1| hypothetical protein BIFADO_01686 [Bifidobacterium adolescentis
L2-32]
gi|154083588|gb|EDN82633.1| endonuclease III [Bifidobacterium adolescentis L2-32]
Length = 221
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + LV TVLS TT+ L +P + AA + +E+ IR G TKA
Sbjct: 35 SPFELLVATVLSAQTTDKRVNMVTPELFGEYPGPAELAAANPEHVEDIIRTIGFFRTKA- 93
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+NI+ E LC+ + G + A L G+G KT VL FPVD
Sbjct: 94 --RNIIGLSHE----LCVRF--GGEVPADMASLVSLPGVGRKTANVVLGNAFGVPGFPVD 145
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRI----PKELKFDLNCLLYTHGK-LCRNCIKK 255
THV ++ + W A + + + + + P E DL+ L HG+ +C
Sbjct: 146 THVIRVTGRLRWRSDWASPSPDPVAIEREVTACFPPEEWTDLSHRLILHGRAIC------ 199
Query: 256 GGNRQRKESAGNLCPLLNYCEKS 278
RK + CPL + C +
Sbjct: 200 ---HARKPDCAD-CPLNDTCPSA 218
>gi|238796526|ref|ZP_04640034.1| Endonuclease III [Yersinia mollaretii ATCC 43969]
gi|238719731|gb|EEQ11539.1| Endonuclease III [Yersinia mollaretii ATCC 43969]
Length = 204
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T + +L +++ I+ GL TKA +N+
Sbjct: 24 LISVLLSAQATDVSVNKATAKLYPVANTPQAILDLGVDGLKSYIKTIGLFNTKA---ENV 80
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K +L LE +G + E +A L G+G KT VL VDTH+F
Sbjct: 81 IKTC-----RLLLEKHQG-EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 134
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ G+ P ++ ++ L + +P E K D + L HG+ CI RK
Sbjct: 135 VCNRTGFAP-GSNVDQVEAKLLKVVPDEFKLDCHHWLILHGRY--TCI------ARKPRC 185
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE K
Sbjct: 186 GS-CIIEDLCEYKEKV 200
>gi|167035313|ref|YP_001670544.1| endonuclease III [Pseudomonas putida GB-1]
gi|166861801|gb|ABZ00209.1| endonuclease III [Pseudomonas putida GB-1]
Length = 212
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS +T+ KA A L T E + A + + I+ GL +KA +
Sbjct: 33 LVAVTLSAQSTDVGVNKATARLFPVANTPEAIYALGVEGLSEYIKTIGLYNSKAKNVIEA 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + L G+G KT VL +Q VDTH++
Sbjct: 93 CRLLIERHGS---------EVPQTREALEALPGVGRKTANVVLNTAFRQPTMAVDTHIYR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P KT L + ++ +PK+ D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKTVLEVEKKLVKFVPKDYLLDAHHWLILHGRYVC---------QA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPRCGS-CRIEDLCEYKHKT 209
>gi|288942209|ref|YP_003444449.1| endonuclease III [Allochromatium vinosum DSM 180]
gi|288897581|gb|ADC63417.1| endonuclease III [Allochromatium vinosum DSM 180]
Length = 212
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 18/166 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + +A A L + T E +LA + ++ IR GL TKA I
Sbjct: 33 LIAVMLSAQATDRSVNQATAGLFAHADTPEAILALGEDGLKAHIRAIGLFNTKARHILQT 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L+E G ++ +A L G+G KT +L + VDTH+F
Sbjct: 93 CALLIERHGG---------AVPRDRAALESLPGVGRKTANVILNTAFGEPTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQ----RIPKELKFDLNCLLYTHGK 247
++ G P KT L + Q ++P E D + L HG+
Sbjct: 144 VANRTGLAP-----GKTPLAVEQGLLDQVPGEFLHDAHHWLILHGR 184
>gi|387772456|ref|ZP_10128400.1| endonuclease III [Haemophilus parahaemolyticus HK385]
gi|386906375|gb|EIJ71110.1| endonuclease III [Haemophilus parahaemolyticus HK385]
Length = 211
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 91/224 (40%), Gaps = 26/224 (11%)
Query: 60 MTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
+TR +N P E + S + L+ +LS T+ KA L T E +LA
Sbjct: 10 LTRLRNENPHPTTELNYS---SPFELLIAVILSAQATDKGVNKATDKLFPVANTPEAILA 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
+ ++ I+ GL +KA I + L+E + + E + L G+
Sbjct: 67 LGVEGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNGI---------VPEDRDALEALAGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVP--TAADRNKTYLHLNQRIPKELKFD 237
G KT VL VDTH+F +S G+ P + K L + +P E K D
Sbjct: 118 GRKTANVVLNTAFGHPTIAVDTHIFRVSNRTGFAPGKNVVEVEKKLLKV---VPAEFKVD 174
Query: 238 LNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
++ L HG+ CI RK G+ C + + CE KT
Sbjct: 175 VHHWLILHGRY--TCI------ARKPRCGS-CIIEDLCEYKEKT 209
>gi|375088848|ref|ZP_09735186.1| endonuclease III [Dolosigranulum pigrum ATCC 51524]
gi|374561813|gb|EHR33152.1| endonuclease III [Dolosigranulum pigrum ATCC 51524]
Length = 214
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS TT+ K L +PT E ++ A+++ I I+ GL KA IK+
Sbjct: 38 LIAVILSAQTTDVGVNKVTPGLFEAYPTPEALMQADREDIMEKIKTIGLYRNKAKFIKSC 97
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
++E G + + + EL G+G KT V+ + VDTHV
Sbjct: 98 ATDIVERFGG---------EVPQTRKELQSLAGVGRKTANVVMSVAFDEPAIAVDTHVNR 148
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKEL 234
ISK P A + L +++P++L
Sbjct: 149 ISKKFNIAPEDASIRQVENCLMEKLPEDL 177
>gi|300681534|emb|CBH32631.1| conserved hypothetical protein [Triticum aestivum]
Length = 840
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 95/255 (37%), Gaps = 46/255 (18%)
Query: 58 HNMTRDKNSV---PLDMNEYDEGEE---------ESVLDGLVKTVLSQNTTEANSL---- 101
H+ NSV P+D E GEE E+ L + T+ ++T + L
Sbjct: 379 HDAGDSTNSVFTNPIDCEEVGYGEEDKSGKPICTENTLRKFIATLRVEDTAHWDKLRDEA 438
Query: 102 --KAFASLKSTFPT----WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGK 155
K + + T T WE V A + I G A I+ L + + G
Sbjct: 439 YRKGYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYLLALRIQAFLTRIKKDHGS 498
Query: 156 LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWV-- 213
L++LR L + K L G+G K+V C+ + L+ FPVD +V I + WV
Sbjct: 499 FDLDWLRCLPRESAKKYLLSINGLGAKSVDCIRLLSLEHKAFPVDVNVARIVTRLQWVEL 558
Query: 214 -------------PTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
P D I KE ++L+CL+ T GK+ C K N
Sbjct: 559 QCCSEEFHSVDLYPLMQDVQNYLWPRLCTIDKEKLYELHCLMITFGKVI--CTKVDPN-- 614
Query: 261 RKESAGNLCPLLNYC 275
N CP C
Sbjct: 615 -----CNACPFRGDC 624
>gi|347758515|ref|YP_004866077.1| endonuclease III [Micavibrio aeruginosavorus ARL-13]
gi|347591033|gb|AEP10075.1| endonuclease III [Micavibrio aeruginosavorus ARL-13]
Length = 211
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 21/197 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS T+ KA L T + +L + +++ I+ GL TKA
Sbjct: 33 LVAVALSAQATDIGVNKATEKLFKIVKTPQDMLKLGEDGLKDHIKTIGLYNTKA------ 86
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K ++ + L +Y G + E + EL + G+G KT VL + VDTH+F
Sbjct: 87 -KNVMAAAEMLVRDY--GGKVPEDRDELVKLPGVGRKTANVVLNIAFGHETIAVDTHLFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
+S G P A L + IP E + + L HG+ +C + RK S
Sbjct: 144 VSNRTGLAP-GATPEAVEAKLEKVIPPEFRRHAHHWLILHGRYIC---------KARKPS 193
Query: 265 AGNLCPLLNYCEKSNKT 281
+CP+ + C +KT
Sbjct: 194 C-PVCPVRDVCGFKDKT 209
>gi|365887671|ref|ZP_09426497.1| endonuclease III DNA-(apurinic or apyrimidinic site) lyase
[Bradyrhizobium sp. STM 3809]
gi|365336743|emb|CCD99028.1| endonuclease III DNA-(apurinic or apyrimidinic site) lyase
[Bradyrhizobium sp. STM 3809]
Length = 279
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA L + T + +LA + + + I+ GL TKA KN+
Sbjct: 102 LVAVVLSAQATDAGVNKATRPLFAIADTPQKMLALGEDNVRDYIKTIGLYRTKA---KNV 158
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L E KL E+ G + +AE+ G G KT VL + VDTHVF
Sbjct: 159 I-ALSE---KLIAEF--GGEVPRTRAEIESLPGAGRKTANVVLNMAFGEHTMAVDTHVFR 212
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ G P + L L + IP E + L HG+
Sbjct: 213 VGNRTGLAPGKTPL-EVELGLEKVIPAEFMLHAHHWLILHGR 253
>gi|55823139|ref|YP_141580.1| endonuclease III, DNA repair [Streptococcus thermophilus CNRZ1066]
gi|55739124|gb|AAV62765.1| endonuclease III, DNA repair [Streptococcus thermophilus CNRZ1066]
Length = 219
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 86/210 (40%), Gaps = 18/210 (8%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
+ + E E E+ LV +LS TT+ K L + +P E + +A +E +R
Sbjct: 25 DAHGELEWETPFQLLVAVILSAQTTDKAVNKVTPGLWARYPEIEDLASANLNDVEMCLRT 84
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL KA KNI+K + L G + + EL G+G KT VL
Sbjct: 85 IGLYKNKA---KNIIKT-----ARAILMNFDG-QVPKTHKELESLPGVGRKTANVVLAEV 135
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
VDTHV +SK + P A + L ++IPK+ + + G+ +
Sbjct: 136 YGIPSIAVDTHVSRVSKRLNIAPENASVEEIEAELMKKIPKKDWIISHHRMIFFGRY--H 193
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K Q CPL YCE +T
Sbjct: 194 CLAKNPKCQT-------CPLQRYCEYYRET 216
>gi|302390061|ref|YP_003825882.1| DNA-(apurinic or apyrimidinic site) lyase [Thermosediminibacter
oceani DSM 16646]
gi|302200689|gb|ADL08259.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Thermosediminibacter oceani DSM 16646]
Length = 229
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 26/182 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LS T+ + A L + E AE+ +E I+ GL +K+ KNI
Sbjct: 47 LVATILSAQCTDRRVNQVTARLFKKYKGPEDFARAERHELEEDIKECGLFRSKS---KNI 103
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
++ ++ +E G DE + EL + G+G KT +L + F VDTHVF
Sbjct: 104 IET-----SRIIVEKYGGRVPDEFE-ELIKLPGVGRKTANVILANAFGKPAFAVDTHVFR 157
Query: 206 ISKAIGWV----PTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL--------CRNCI 253
+++ +G+ P +++ L ++P+E + L HG+ C NC+
Sbjct: 158 VARRLGFSDGKDPLGVEKD-----LTAKVPREYWIKAHHWLINHGRRVCTARKPKCENCV 212
Query: 254 KK 255
K
Sbjct: 213 LK 214
>gi|306827478|ref|ZP_07460761.1| endonuclease III [Streptococcus pyogenes ATCC 10782]
gi|304430276|gb|EFM33302.1| endonuclease III [Streptococcus pyogenes ATCC 10782]
Length = 218
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 18/206 (8%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E + E+ L+ +LS TT+ K L ++P E + AE +ENA+R GL
Sbjct: 25 ELDWETPFQLLIAVILSAQTTDKAVNKGTPGLWQSYPEIEDLAFAELSDVENALRTIGLY 84
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA KNI+K + + +G + + EL G+G KT VL
Sbjct: 85 KNKA---KNIIKT-----AQAIRDDFKG-QVPKTHKELESLPGVGRKTANVVLAEVYGVP 135
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
VDTHV +SK + AD + L +IPK+ + L G+ +C+
Sbjct: 136 AIAVDTHVARVSKRLNISSPDADVKQIEADLMAKIPKKDWIITHHRLIFFGRY--HCLA- 192
Query: 256 GGNRQRKESAGNLCPLLNYCEKSNKT 281
K+ +CP+ +YC+ T
Sbjct: 193 ------KKPKCEICPVQSYCKYYQDT 212
>gi|407465823|ref|YP_006776705.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus sp. AR2]
gi|407049011|gb|AFS83763.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus sp. AR2]
Length = 216
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T + + KA L S + + + A+ K +E I+ G K+ I +
Sbjct: 37 LIGTILSARTKDEATTKAVKELFSKYKNPKELANAKIKDVEKIIKSIGFFHVKSKRIIEV 96
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K+ + +G D ++ L G+G KT CVL++ ++ PVD HV
Sbjct: 97 --------AKIIDKKYKGKVPDNLET-LVELPGVGRKTANCVLVYAFEKPAIPVDIHVHR 147
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS +G V T + +T L ++I K+ D+N +G+ +C+
Sbjct: 148 ISNRLGLVDT-KNPEETEQELMKKIQKKYWIDINDTFVMYGQNICK 192
>gi|242398202|ref|YP_002993626.1| Endonuclease III [Thermococcus sibiricus MM 739]
gi|242264595|gb|ACS89277.1| Endonuclease III [Thermococcus sibiricus MM 739]
Length = 233
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDG-----LVKTVLSQNTTEANSLKAFASLKSTFPTWEH 116
R K V +N Y + E +L G L+ ++SQ + + K L + E+
Sbjct: 21 RAKEIVKRLINHY---QREKLLTGDPYKTLIYCIISQRMRDEVTNKVGKMLFKKYKNIEN 77
Query: 117 VLAAEQKCIENAIRCGG--LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELS 174
+ A + ++ +R G L TK I + +L EY RG ++I+ EL
Sbjct: 78 IANAPVEEMQEFLRNNGVGLWKTKGEWIVRTSQIILR-------EY-RGRVPNKIE-ELM 128
Query: 175 RFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKEL 234
+ GIG K VL + + PVDTHV ISK +G P K +L + IP++L
Sbjct: 129 KLPGIGRKCANIVLAYGFGKQTIPVDTHVNRISKRLGLAPPTVAPEKVEEYLKKLIPEDL 188
Query: 235 KFDLNCLLYTHGK-LCR 250
+N + HGK +C+
Sbjct: 189 WIYINHAMVDHGKRICK 205
>gi|365157635|ref|ZP_09353887.1| endonuclease III [Bacillus smithii 7_3_47FAA]
gi|363623160|gb|EHL74286.1| endonuclease III [Bacillus smithii 7_3_47FAA]
Length = 229
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ VLS +T+A+ K SL + E + + +E IR GL TKA I+ +
Sbjct: 35 LIAVVLSAQSTDAHVNKVTKSLFQKYKRPEDYVRVPLEELEQDIRSIGLYRTKAKNIQKL 94
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+E + E K EL G+G KT V+ Q VDTHV
Sbjct: 95 CKILIEKHQG---------QVPETKEELMELPGVGRKTANVVVSIAFGQPAIAVDTHVER 145
Query: 206 ISKAIG---WVPTAADRNKTYLHLNQRIPKE 233
+SK +G W + + +T L +++PKE
Sbjct: 146 VSKRLGICRWKDSVWEVEQT---LMKKVPKE 173
>gi|448100402|ref|XP_004199342.1| Piso0_002778 [Millerozyma farinosa CBS 7064]
gi|359380764|emb|CCE83005.1| Piso0_002778 [Millerozyma farinosa CBS 7064]
Length = 362
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 20/182 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFP--------TWEHVLAAEQKCIENAIRCGGLAPT 137
LV +LS T + + A +L T E VL + ++ I G
Sbjct: 137 LVSLILSSQTKDEVTYNAMLNLNRHLMDRGFEDGLTLEAVLTLSETEVDGLISKVGFHRK 196
Query: 138 KAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ-QDD 196
KAA I L E+ G + + E++R G+GPK ++ D
Sbjct: 197 KAAYILKSAAILKETAGS---------DVPQTVDEITRLPGVGPKMAYLLIQRGWNINDG 247
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKG 256
VD HV +++ WVP + + +T L L +P++ ++N LL G++ C+ +
Sbjct: 248 IGVDVHVHRLAQMWRWVPKSDNPERTRLALQAWLPRKFWPEINPLLVGFGQVV--CVPRA 305
Query: 257 GN 258
GN
Sbjct: 306 GN 307
>gi|255319167|ref|ZP_05360385.1| endonuclease III [Acinetobacter radioresistens SK82]
gi|262379299|ref|ZP_06072455.1| endonuclease III [Acinetobacter radioresistens SH164]
gi|421854815|ref|ZP_16287200.1| endonuclease III [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|255303813|gb|EET83012.1| endonuclease III [Acinetobacter radioresistens SK82]
gi|262298756|gb|EEY86669.1| endonuclease III [Acinetobacter radioresistens SH164]
gi|403189830|dbj|GAB73401.1| endonuclease III [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 238
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 86/212 (40%), Gaps = 35/212 (16%)
Query: 48 FVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASL 107
F + R QR H T + S P ++ LV LS T+ + KA L
Sbjct: 21 FERLRQQR-PHPTTELRFSSPFEL--------------LVAVTLSAQATDVSVNKATDKL 65
Query: 108 KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSID 167
T E + A + ++ I+ GL KA +N++K K+ +E G +
Sbjct: 66 FPVANTPEAIYALGVEGLKAYIKTIGLYNAKA---ENVIKAC-----KILIEQHNG-QVP 116
Query: 168 EIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLN 227
E +AEL G+G KT VL Q VDTH+F + G P K L +
Sbjct: 117 ETRAELEALPGVGRKTANVVLNTAFGQPTMAVDTHIFRVGNRTGLAP-----GKNVLEVE 171
Query: 228 QR----IPKELKFDLNCLLYTHGKLCRNCIKK 255
Q+ IPKE D + L HG+ CI +
Sbjct: 172 QQLLKVIPKEFIVDAHHWLILHGRY--TCIAR 201
>gi|156934165|ref|YP_001438081.1| hypothetical protein ESA_01992 [Cronobacter sakazakii ATCC BAA-894]
gi|389841144|ref|YP_006343228.1| endonuclease III [Cronobacter sakazakii ES15]
gi|156532419|gb|ABU77245.1| hypothetical protein ESA_01992 [Cronobacter sakazakii ATCC BAA-894]
gi|387851620|gb|AFJ99717.1| endonuclease III [Cronobacter sakazakii ES15]
Length = 211
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T E +LA ++ I+ GL +KA
Sbjct: 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPEAMLALGVDGVKEYIKTIGLFNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + LLE G + E +A L G+G KT VL VD
Sbjct: 88 NVIKTCRILLEKHGG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S + P + + L + +P E K D + L HG+ CI
Sbjct: 139 THIFRVSNRTKFAP-GKNVDAVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE + K
Sbjct: 190 RKPRCGS-CIIEDLCEYAEKV 209
>gi|347760464|ref|YP_004868025.1| endonuclease III [Gluconacetobacter xylinus NBRC 3288]
gi|347579434|dbj|BAK83655.1| endonuclease III [Gluconacetobacter xylinus NBRC 3288]
Length = 232
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A+ KA L PT + ++ + + IR GL TKA + +
Sbjct: 47 LVAVVLSAQATDASVNKATVGLFRDAPTPQAMVELGEGKVGEHIRTVGLWRTKARNVVAL 106
Query: 146 LKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
+ LLE G++ + +A L G+G KT V+ VDTH+F
Sbjct: 107 SRQLLERFDGRVPYD----------RAALESLPGVGRKTANVVMNVAFGDSTMAVDTHIF 156
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
I G P A+ R L L +RIP ++ + L HG+ +C+
Sbjct: 157 RIGNRTGLAPGASVRAVEDL-LVRRIPADMLRPAHHWLILHGRYICK 202
>gi|300681535|emb|CBH32632.1| conserved hypothetical protein, expressed [Triticum aestivum]
Length = 950
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 95/255 (37%), Gaps = 46/255 (18%)
Query: 58 HNMTRDKNSV---PLDMNEYDEGEE---------ESVLDGLVKTVLSQNTTEANSL---- 101
H+ NSV P+D E GEE E+ L + T+ ++T + L
Sbjct: 379 HDAGDSTNSVFTNPIDCEEVGYGEEDKSGKPICTENTLRKFIATLRVEDTAHWDKLRDEA 438
Query: 102 --KAFASLKSTFPT----WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGK 155
K + + T T WE V A + I G A I+ L + + G
Sbjct: 439 YRKGYDNGSKTRITDKVNWEAVQQASFVDVAKCIAGRGQHYLLALRIQAFLTRIKKDHGS 498
Query: 156 LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWV-- 213
L++LR L + K L G+G K+V C+ + L+ FPVD +V I + WV
Sbjct: 499 FDLDWLRCLPRESAKKYLLSINGLGAKSVDCIRLLSLEHKAFPVDVNVARIVTRLQWVEL 558
Query: 214 -------------PTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
P D I KE ++L+CL+ T GK+ C K N
Sbjct: 559 QCCSEEFHSVDLYPLMQDVQNYLWPRLCTIDKEKLYELHCLMITFGKVI--CTKVDPN-- 614
Query: 261 RKESAGNLCPLLNYC 275
N CP C
Sbjct: 615 -----CNACPFRGDC 624
>gi|119026466|ref|YP_910311.1| endonuclease III [Bifidobacterium adolescentis ATCC 15703]
gi|118766050|dbj|BAF40229.1| endonuclease III [Bifidobacterium adolescentis ATCC 15703]
Length = 221
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 73/171 (42%), Gaps = 13/171 (7%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + LV TVLS TT+ L +P + AA + +E+ IR G TKA
Sbjct: 35 SPFELLVATVLSAQTTDKRVNMVTPELFGEYPGPAELAAANPEHVEDIIRTIGFFRTKA- 93
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+NI+ E LC+ + G + A L G+G KT VL FPVD
Sbjct: 94 --RNIIGLSHE----LCVRF--GGEVPADMASLVSLPGVGRKTANVVLGNAFGVPGFPVD 145
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRI----PKELKFDLNCLLYTHGK 247
THV ++ + W A + + + + + P E DL+ L HG+
Sbjct: 146 THVIRVTGRLRWRSDWASPSPDPVAIEREVTACFPPEEWTDLSHRLILHGR 196
>gi|429086515|ref|ZP_19149247.1| Endonuclease III [Cronobacter universalis NCTC 9529]
gi|426506318|emb|CCK14359.1| Endonuclease III [Cronobacter universalis NCTC 9529]
Length = 211
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T E +LA + ++ I+ GL +KA
Sbjct: 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPEAMLALGVEGVKEYIKTIGLFNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + LLE G + E +A L G+G KT VL VD
Sbjct: 88 NVIKTCRILLEQHGG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S + P + L + +P E K D + L HG+ CI
Sbjct: 139 THIFRVSNRTKFAP-GKNVEAVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE + K
Sbjct: 190 RKPRCGS-CIIEDLCEYAEKV 209
>gi|393796716|ref|ZP_10380080.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 175
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 11/161 (6%)
Query: 91 LSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLL 150
+S T + + KA L S + + + +A+ K +E I+ G K+ I + K ++
Sbjct: 1 MSARTKDETTTKAVKVLFSKYKNAKELASAKTKDVEKIIKSIGFYHVKSKRIIEVAK-II 59
Query: 151 ESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAI 210
SK K G D ++ +L G+G KT CVL++ + PVD HV IS +
Sbjct: 60 NSKYK-------GKVPDNLE-KLVELPGVGRKTANCVLVYAFDKPAIPVDIHVHRISNRL 111
Query: 211 GWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
G V T +T L + IPK+ D+N +G+ +C+
Sbjct: 112 GLVNTKTPE-ETEQELMRIIPKKFWIDINDTFVMYGQNICK 151
>gi|352682089|ref|YP_004892613.1| DNA endonuclease III [Thermoproteus tenax Kra 1]
gi|350274888|emb|CCC81534.1| DNA endonuclease III [Thermoproteus tenax Kra 1]
Length = 224
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWE--HVLAAEQKCIENAIRCGGLAPTK 138
+ + L+ +L+QNT++ N+ KA+ +LK E +L+ ++ + IR G+ +
Sbjct: 34 GLFELLIAIILTQNTSDKNAFKAYYNLKGRLGIIEPQSILSLSEEELSQLIRPAGMHRGR 93
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A + + + LL LE + +S +E + L G+G KT A VL+ ++ + FP
Sbjct: 94 ARKLIELSRSLLGHP----LEEISRMSFEEARKFLMDLPGVGEKT-ADVLLLNMGKPAFP 148
Query: 199 VDTHVFEIS 207
VDTH+ I+
Sbjct: 149 VDTHIKRIA 157
>gi|387783942|ref|YP_006070025.1| putative endonuclease III (DNA-(apurinic or apyrimidinic site)
lyase) [Streptococcus salivarius JIM8777]
gi|338744824|emb|CCB95190.1| putative endonuclease III (DNA-(apurinic or apyrimidinic site)
lyase) [Streptococcus salivarius JIM8777]
Length = 214
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 18/210 (8%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
N + E + E+ LV +LS TT+ K L + +P E + +A +E +R
Sbjct: 20 NAHGELDWETPFQLLVAVILSAQTTDKAVNKITPGLWARYPEIEDLASANLDDVEMCLRT 79
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL KA +NI+K + L G + + EL G+G KT VL
Sbjct: 80 IGLYKNKA---RNIIKT-----ARAVLMNFDG-QVPKTHKELESLPGVGRKTANVVLAEV 130
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
VDTHV +SK + VP A + L ++IPK + + G+ +
Sbjct: 131 YGIPSIAVDTHVSRVSKRLNIVPEDASVEEIEAELMKKIPKRDWIISHHRMIFFGRY--H 188
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K Q CPL +YC+ +T
Sbjct: 189 CLAKNPKCQT-------CPLQSYCKYYKET 211
>gi|19745991|ref|NP_607127.1| endonuclease III (DNA repair) [Streptococcus pyogenes MGAS8232]
gi|19748153|gb|AAL97626.1| putative endonuclease III (DNA repair) [Streptococcus pyogenes
MGAS8232]
Length = 218
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 26/210 (12%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E + E+ L+ +LS TT+ K L ++P E + AE +ENA+R GL
Sbjct: 25 ELDWETPFQLLIAVILSAQTTDKAVNKVTPGLWQSYPEIEDLAFAELSDVENALRTIGLY 84
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA KNI+K + + +G + + EL G+G KT VL
Sbjct: 85 KNKA---KNIIKT-----AQAIRDDFKG-QVPKTHKELESLPGVGRKTANVVLAEVYGVP 135
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC----RN 251
VDTHV +SK + AD + L +IPK+ + TH +L +
Sbjct: 136 AIAVDTHVARVSKRLNISSPDADVKQIEADLMAKIPKK------DWIITHHRLIFFGRYH 189
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K+ +CP+ +YC+ T
Sbjct: 190 CLA-------KKPKCEICPVQSYCKYYQNT 212
>gi|148264846|ref|YP_001231552.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter uraniireducens
Rf4]
gi|146398346|gb|ABQ26979.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter uraniireducens
Rf4]
Length = 218
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 81/185 (43%), Gaps = 21/185 (11%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
EG+ VL + ++ +Q+ T A + + +L T P+ L E IE AI G
Sbjct: 32 EGDPFKVLVSCILSLRTQDKTTAAASERLFALAGT-PSDLGTLPTET--IEKAIYPVGFY 88
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KAA IK+I +L E G DEI EL F+G+G KT V+ +
Sbjct: 89 RVKAAQIKDI--------SRLIQEKYAGRVPDEID-ELLTFKGVGRKTANLVVTLGYGKP 139
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-------- 247
VDTHV I G+V T +T L ++P++ +N LL T G+
Sbjct: 140 GICVDTHVHRICNRWGYVQTKTP-EQTEFALRGKLPRDYWLVINDLLVTFGQNQCLPVSP 198
Query: 248 LCRNC 252
LC C
Sbjct: 199 LCSTC 203
>gi|94543806|gb|ABF33854.1| Endonuclease III [Streptococcus pyogenes MGAS10270]
Length = 218
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 18/206 (8%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E + E+ L+ +LS TT+ K L ++P E + AE +ENA+R GL
Sbjct: 25 ELDWETPFQLLIAVILSAQTTDKAVNKVTPGLWQSYPEIEDLAFAEVSDVENALRTIGLY 84
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA KNI+K + + +G + + EL G+G KT VL
Sbjct: 85 KNKA---KNIIKT-----AQAIRDDFKG-QVPKTHKELESLPGVGRKTANVVLAEVYGVP 135
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
VDTHV +SK + AD + L +IPK+ + L G+ +C+
Sbjct: 136 AIAVDTHVARVSKRLNISSPDADVKQIEADLMAKIPKKDWIITHHRLIFFGRY--HCLA- 192
Query: 256 GGNRQRKESAGNLCPLLNYCEKSNKT 281
K+ +CP+ +YC+ T
Sbjct: 193 ------KKPKCEICPVQSYCKYYQNT 212
>gi|448350252|ref|ZP_21539071.1| HhH-GPD family protein [Natrialba taiwanensis DSM 12281]
gi|445637759|gb|ELY90907.1| HhH-GPD family protein [Natrialba taiwanensis DSM 12281]
Length = 276
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 8/154 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASL-----KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
LV+T+LSQNT++ S A +L S + AAEQ + I GL K+
Sbjct: 64 LVRTILSQNTSDKASQPAHDALIDRYGGSDADLAAELAAAEQSRLAETISSAGLYNQKSE 123
Query: 141 CIKNILKCLLESKGKLCLEYLRGL--SIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-F 197
I + + + G + E++ L RG+GPKT CVL+F + F
Sbjct: 124 MIIGAAEWVCDEFGSAAAFDAFVADKAPGEVRETLLDVRGVGPKTADCVLLFAGGRGGVF 183
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
PVDTHV I + +G P AD + +P
Sbjct: 184 PVDTHVHRIYRRLGIAPPDADHEDVREVVEDEVP 217
>gi|395648781|ref|ZP_10436631.1| endonuclease III [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 212
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 21/202 (10%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS +T+ KA A L T E + A + + I+ GL +KA
Sbjct: 28 SPFELLIAVILSAQSTDVGVNKATAKLYPVANTPEAIYALGVEGLSEYIKTIGLYNSKAK 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + L+E G + + + L G+G KT VL +Q VD
Sbjct: 88 NVIETCRLLIERHGS---------EVPQTREALEALPGVGRKTANVVLNTAFRQLTMAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNR 259
TH+F +S G + + + L + +PK+ D + L HG+ +C +
Sbjct: 139 THIFRVSNRTG-IARGKNVVEVEKQLMKFVPKQYLLDSHHWLILHGRYVC---------Q 188
Query: 260 QRKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE NKT
Sbjct: 189 ARKPRCGS-CRIEDLCEYKNKT 209
>gi|386389330|ref|ZP_10074146.1| endonuclease III [Haemophilus paraphrohaemolyticus HK411]
gi|385695709|gb|EIG26260.1| endonuclease III [Haemophilus paraphrohaemolyticus HK411]
Length = 211
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 90/224 (40%), Gaps = 26/224 (11%)
Query: 60 MTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
+TR +N P E + S + L+ +LS T+ KA L T E +LA
Sbjct: 10 LTRLRNENPHPTTELNYS---SPFELLIAVILSAQATDKGVNKATDKLFPVTNTPEAILA 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ I+ GL +KA I + L+E + + E + L G+
Sbjct: 67 LGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNGI---------VPEDREALEALAGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVP--TAADRNKTYLHLNQRIPKELKFD 237
G KT VL VDTH+F +S G+ P + K L + +P E K D
Sbjct: 118 GRKTANVVLNTAFGHPTIAVDTHIFRVSNRTGFAPGKNVVEVEKKLLKV---VPDEFKVD 174
Query: 238 LNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
++ L HG+ CI RK G+ C + + CE KT
Sbjct: 175 VHHWLILHGRY--TCI------ARKPHCGS-CIIEDLCEYKEKT 209
>gi|332559505|ref|ZP_08413827.1| Endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase
[Rhodobacter sphaeroides WS8N]
gi|332277217|gb|EGJ22532.1| Endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase
[Rhodobacter sphaeroides WS8N]
Length = 214
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS T+A KA +L + T +L ++ + IR GL KA KN+
Sbjct: 37 LVAVALSAQATDAGVNKATRALFAQVTTPAEMLELGEEGLTEHIRTIGLYRNKA---KNV 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ + +L +++ G + +A L G+G KT VL Q VDTH+F
Sbjct: 94 I-----ALSRLLVDHYDG-EVPSSRAALQSLPGVGRKTANVVLNMWFHQPAMAVDTHIFR 147
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
++ G P D L +P + L HG+ C+ RK
Sbjct: 148 VANRTGIAP-GRDVEAVERALEDHVPAPFALHAHHWLILHGRYI--CVA------RKPRC 198
Query: 266 GNLCPLLNYCEKSNKT 281
G +CP+ + C KT
Sbjct: 199 G-ICPIRDLCPYEEKT 213
>gi|319790239|ref|YP_004151872.1| iron-sulfur cluster loop protein [Thermovibrio ammonificans HB-1]
gi|317114741|gb|ADU97231.1| iron-sulfur cluster loop protein [Thermovibrio ammonificans HB-1]
Length = 214
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 14/163 (8%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIEN---AIRCGGLAPTKA 139
L+ V TVLSQNTT+ N+ + LK T +L Q + AIR G+ K
Sbjct: 30 LEQAVFTVLSQNTTDLNASRCLERLKRA--TGGKLLEIPQLTTDELVEAIRPCGMFKQKE 87
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
++ ++ S+ E LR L +E L+ IGPKT +L F ++ FP+
Sbjct: 88 RALRELV-----SRWPRLEEKLRELPPEEGIKLLTELPYIGPKTARVILTFGFGKNTFPI 142
Query: 200 DTHVFEISKAIGWVPTAADRNKTYL----HLNQRIPKELKFDL 238
DTH ++ +G P + H + R +EL ++L
Sbjct: 143 DTHCKKVLSRLGIFPKGWSTEEISRFFEKHFSARFNRELHYNL 185
>gi|424799476|ref|ZP_18225018.1| Endonuclease III [Cronobacter sakazakii 696]
gi|429119608|ref|ZP_19180317.1| Endonuclease III [Cronobacter sakazakii 680]
gi|423235197|emb|CCK06888.1| Endonuclease III [Cronobacter sakazakii 696]
gi|426325864|emb|CCK11054.1| Endonuclease III [Cronobacter sakazakii 680]
Length = 211
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 83/200 (41%), Gaps = 19/200 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T E +LA ++ I+ GL +KA
Sbjct: 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPEAMLALGVDGVKEYIKTIGLFNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + LLE G + E +A L G+G KT VL VD
Sbjct: 88 NVIKTCRILLEKHGG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S + P + + L + +P E K D + L HG+ CI
Sbjct: 139 THIFRVSNRTKFAP-GKNVDAVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNK 280
RK G+ C + + CE + K
Sbjct: 190 RKPRCGS-CIIEDLCEYAEK 208
>gi|21910178|ref|NP_664446.1| endonuclease III (DNA repair) [Streptococcus pyogenes MGAS315]
gi|28896122|ref|NP_802472.1| endonuclease III [Streptococcus pyogenes SSI-1]
gi|50914102|ref|YP_060074.1| endonuclease III [Streptococcus pyogenes MGAS10394]
gi|71903375|ref|YP_280178.1| endonuclease III [Streptococcus pyogenes MGAS6180]
gi|94988419|ref|YP_596520.1| endonuclease III [Streptococcus pyogenes MGAS9429]
gi|94992299|ref|YP_600398.1| endonuclease III [Streptococcus pyogenes MGAS2096]
gi|94994220|ref|YP_602318.1| endonuclease III [Streptococcus pyogenes MGAS10750]
gi|386362582|ref|YP_006071913.1| endonuclease III [Streptococcus pyogenes Alab49]
gi|417857064|ref|ZP_12502123.1| endonuclease III [Streptococcus pyogenes HKU QMH11M0907901]
gi|421892324|ref|ZP_16323006.1| Endonuclease III [Streptococcus pyogenes NS88.2]
gi|21904371|gb|AAM79249.1| putative endonuclease III (DNA repair) [Streptococcus pyogenes
MGAS315]
gi|28811372|dbj|BAC64305.1| putative endonuclease III (DNA repair) [Streptococcus pyogenes
SSI-1]
gi|50903176|gb|AAT86891.1| Endonuclease III [Streptococcus pyogenes MGAS10394]
gi|71802470|gb|AAX71823.1| endonuclease III [Streptococcus pyogenes MGAS6180]
gi|94541927|gb|ABF31976.1| endonuclease III [Streptococcus pyogenes MGAS9429]
gi|94545807|gb|ABF35854.1| Endonuclease III [Streptococcus pyogenes MGAS2096]
gi|94547728|gb|ABF37774.1| Endonuclease III [Streptococcus pyogenes MGAS10750]
gi|350276991|gb|AEQ24359.1| endonuclease III [Streptococcus pyogenes Alab49]
gi|379981925|emb|CCG26728.1| Endonuclease III [Streptococcus pyogenes NS88.2]
gi|387934019|gb|EIK42132.1| endonuclease III [Streptococcus pyogenes HKU QMH11M0907901]
Length = 218
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 18/206 (8%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E + E+ L+ +LS TT+ K L ++P E + AE +ENA+R GL
Sbjct: 25 ELDWETPFQLLIAVILSAQTTDKAVNKVTPGLWQSYPEIEDLAFAELSDVENALRTIGLY 84
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA KNI+K + + +G + + EL G+G KT VL
Sbjct: 85 KNKA---KNIIKT-----AQAIRDDFKG-QVPKTHKELESLPGVGRKTANVVLAEVYGVP 135
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
VDTHV +SK + AD + L +IPK+ + L G+ +C+
Sbjct: 136 AIAVDTHVARVSKRLNISSPDADVKQIEADLMAKIPKKDWIITHHRLIFFGRY--HCLA- 192
Query: 256 GGNRQRKESAGNLCPLLNYCEKSNKT 281
K+ +CP+ +YC+ T
Sbjct: 193 ------KKPKCEICPVQSYCKYYQNT 212
>gi|407363495|ref|ZP_11110027.1| endonuclease III [Pseudomonas mandelii JR-1]
Length = 212
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS +T+ KA A L T + A + + I+ GL +KA
Sbjct: 28 SPFELLIAVILSAQSTDVGVNKATARLYPVANTPAAIYALGVEGLSEYIKTIGLFNSKAK 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + L+E G + + EL G+G KT VL +Q VD
Sbjct: 88 NVIETCRLLVERHGG---------EVPHTREELEALPGVGRKTANVVLNTAFRQLTMAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S G P + + + L + +PK+ D + L HG+ C+
Sbjct: 139 THIFRVSNRTGIAP-GKNVVEVEMKLMKFVPKQYLLDSHHWLILHGRYV--CL------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE KT
Sbjct: 190 RKPRCGS-CRIEDLCEYKQKT 209
>gi|417790306|ref|ZP_12437867.1| hypothetical protein CSE899_06643 [Cronobacter sakazakii E899]
gi|449308417|ref|YP_007440773.1| endonuclease III [Cronobacter sakazakii SP291]
gi|333955593|gb|EGL73335.1| hypothetical protein CSE899_06643 [Cronobacter sakazakii E899]
gi|449098450|gb|AGE86484.1| endonuclease III [Cronobacter sakazakii SP291]
Length = 211
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T E +LA ++ I+ GL +KA
Sbjct: 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPEAMLALGVDGVKEYIKTIGLFNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + LLE G + E +A L G+G KT VL VD
Sbjct: 88 NVIKTCRILLEKHGG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S + P + + L + +P E K D + L HG+ CI
Sbjct: 139 THIFRVSNRTKFAP-GKNVDAVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE + K
Sbjct: 190 RKPRCGS-CIIEDLCEYAEKV 209
>gi|146276253|ref|YP_001166412.1| endonuclease III [Rhodobacter sphaeroides ATCC 17025]
gi|145554494|gb|ABP69107.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Rhodobacter sphaeroides ATCC 17025]
Length = 214
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 80/196 (40%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS T+A KA +L + T +L ++ + IR GL KA KN+
Sbjct: 37 LVAVALSAQATDAGVNKATRALFARVTTPAQMLELGEEGLTEHIRTIGLYRNKA---KNV 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ + +L +++ G + +A L G+G KT VL Q VDTH+F
Sbjct: 94 I-----ALSRLLVDHYDG-EVPASRAALQSLPGVGRKTANVVLNMWFHQPAMAVDTHIFR 147
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
++ G P D L +P + L HG+ C+ RK
Sbjct: 148 VANRTGIAP-GRDVEAVERALEDHVPAPFALHAHHWLILHGRYI--CVA------RKPKC 198
Query: 266 GNLCPLLNYCEKSNKT 281
G +CP+ + C +KT
Sbjct: 199 G-ICPIRDLCLYEDKT 213
>gi|171184578|ref|YP_001793497.1| DNA-(apurinic or apyrimidinic site) lyase [Pyrobaculum neutrophilum
V24Sta]
gi|170933790|gb|ACB39051.1| DNA-(apurinic or apyrimidinic site) lyase [Pyrobaculum neutrophilum
V24Sta]
Length = 222
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
+V VLSQNT++ N+ KAF SLK T E V ++ + I+ G+ +A +K
Sbjct: 34 VVAVVLSQNTSDKNAFKAFNSLKRALGSITPEAVAKLAEEELAALIKPAGMYRIRARALK 93
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ + L K + + L + + +A L G+G KT A V++ ++ FPVDTH+
Sbjct: 94 ALAEAFL--KHGITPQRLLEMGAERARAFLMSLPGVGKKT-ADVVLVNIGLPAFPVDTHI 150
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
I++ G + + ++ ++ R+P + + L G+ +CR
Sbjct: 151 TRIARRWGIGRSYDEISRWFM---DRLPPARYLEFHLKLIQFGRDVCR 195
>gi|395215283|ref|ZP_10400884.1| endonuclease III [Pontibacter sp. BAB1700]
gi|394455890|gb|EJF10288.1| endonuclease III [Pontibacter sp. BAB1700]
Length = 228
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 19/191 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
++ VLS T+ +L +FPT EH+ AA + I IR KA + +
Sbjct: 34 ILAVVLSAQCTDKRVNMVTPALFESFPTPEHLAAATPEEIFPIIRSISYPNNKAKHLAGL 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E + EL + G+G KT ++ Q VDTHVF
Sbjct: 94 GRMLVEQFNS---------EVPSTVEELVKLPGVGRKTANVIVSVIWNQPAMAVDTHVFR 144
Query: 206 ISKAIGWVP-TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKES 264
+SK +G V TA + L +P+EL + L HG+ CI + R + E
Sbjct: 145 VSKRLGLVSKTAKTPLEVEKELVANLPQELIAKAHHWLILHGRYI--CIAR---RPKCEE 199
Query: 265 AGNLCPLLNYC 275
CPL ++C
Sbjct: 200 ----CPLTHFC 206
>gi|329298915|ref|ZP_08256251.1| endonuclease III [Plautia stali symbiont]
Length = 210
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 101/230 (43%), Gaps = 23/230 (10%)
Query: 52 RNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF 111
+++RL+ +TR +++ P E + S + L+ +LS T+ + KA A L
Sbjct: 3 KDKRLQI-LTRLRDANPHPTTELNFS---SPFELLIAVLLSAQATDVSVNKATARLYPVA 58
Query: 112 PTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKA 171
T +LA + ++ I+ GL +KA + I + LLE G + + E +A
Sbjct: 59 NTPAAMLALGVEGVKEYIKTIGLFNSKAENVIKICRILLEQHGGV---------VPEDRA 109
Query: 172 ELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
L G+G KT VL VDTH+F +S + P + + L + +P
Sbjct: 110 ALEALPGVGRKTANVVLNTAFGWPIIAVDTHIFRVSNRTRFAP-GKNVEEVEQKLLKVVP 168
Query: 232 KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
+ K D + L HG+ C+ RK G+ C + + CE + KT
Sbjct: 169 ADFKVDCHHWLILHGRY--TCV------ARKPRCGS-CLIEDLCEFTEKT 209
>gi|428671556|gb|EKX72474.1| endonuclease III family member protein [Babesia equi]
Length = 666
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 16/189 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS T + + + LK T + ++ ++ ++ I G TKA IK
Sbjct: 484 LVACMLSSQTKDQVTAQTMDVLKKRGLTLDSIMEISEEELDTLISRVGFHNTKAKNIKKT 543
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHVF 204
+ E G + + EL G+GPK V+ ++ D VD HV
Sbjct: 544 ATIIHEKFGG---------RVPDTMEELVSLPGVGPKMANLVIQLAFKRIDGISVDLHVH 594
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR----NCIKKGGNR 259
IS +GWV T ++T L L + IP++L ++N LL G+ +C C G N+
Sbjct: 595 RISNRLGWVKTKTP-DETRLQLQELIPQKLWAEVNHLLVGFGQTICTAAGPGCATCGANK 653
Query: 260 QRKESAGNL 268
NL
Sbjct: 654 WCPTGIANL 662
>gi|398830894|ref|ZP_10589075.1| endonuclease III [Phyllobacterium sp. YR531]
gi|398213474|gb|EJN00068.1| endonuclease III [Phyllobacterium sp. YR531]
Length = 252
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Query: 76 EGEEESV--LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
+GE E V LV VLS T+ KA +L T E +LA ++ + + IR G
Sbjct: 49 KGELEHVNPFTLLVAVVLSAQATDVGVNKATRALFKIADTPEKMLALGEEKVGDYIRTIG 108
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L KA + + + L+ G + + + + EL + G+G KT VL
Sbjct: 109 LWRNKAKNVITLSQTLINDYGSV---------VPDSRDELVKLPGVGRKTANVVLSMAFG 159
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
Q VDTH+F I +G P + L + IP E + + L HG+
Sbjct: 160 QATMAVDTHIFRIGNRLGLAP-GKTPEQVEDKLMKIIPAEYLYHAHHWLILHGR 212
>gi|429115403|ref|ZP_19176321.1| Endonuclease III [Cronobacter sakazakii 701]
gi|426318532|emb|CCK02434.1| Endonuclease III [Cronobacter sakazakii 701]
Length = 211
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 83/200 (41%), Gaps = 19/200 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T E +LA ++ I+ GL +KA
Sbjct: 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPEAMLALGVDGVKEYIKTIGLFNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + LLE G + E +A L G+G KT VL VD
Sbjct: 88 NVIKTCRILLEKHGG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S + P + + L + +P E K D + L HG+ CI
Sbjct: 139 THIFRVSNRTKFAP-GKNVDAVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNK 280
RK G+ C + + CE + K
Sbjct: 190 RKPRCGS-CIIEDLCEYAEK 208
>gi|15669625|ref|NP_248438.1| endonuclease III [Methanocaldococcus jannaschii DSM 2661]
gi|41018436|sp|Q58829.1|Y1434_METJA RecName: Full=Putative endonuclease MJ1434
gi|1592082|gb|AAB99444.1| endonuclease III, putative (nth2) [Methanocaldococcus jannaschii
DSM 2661]
Length = 220
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 19/202 (9%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWE-HVLAAEQKCIENAIRCGGLAPTK 138
E+ + +V +L+QNT+ N +A +LK E +L ++ ++ IR G K
Sbjct: 29 ETRYEVVVGAILTQNTSWKNVERAINNLKMEDLLEEVKILNVDEDKLKELIRPAGFYNLK 88
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEI--KAELSRFRGIGPKTVACVLMFHLQQDD 196
A +KN+ K ++E+ G E + D + +AEL G+G +T +L++ L ++
Sbjct: 89 AKRLKNVTKFIVENYGNT--EEMAKTDKDTLILRAELLSINGVGKETADSILLYALDRES 146
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTH-GKLCRNCI 253
F VD + + +G + A ++ + +PK+L+ + + L+ H K C
Sbjct: 147 FVVDAYTKRMFSRLGVINEKAKYDEIKEIFEKNLPKDLEIYKEYHALIVEHCKKFC---- 202
Query: 254 KKGGNRQRKESAGNLCPLLNYC 275
RK++ + CP+ +C
Sbjct: 203 -------RKKALCDNCPIKEFC 217
>gi|148251819|ref|YP_001236404.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Bradyrhizobium sp. BTAi1]
gi|146403992|gb|ABQ32498.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Bradyrhizobium sp. BTAi1]
Length = 274
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA L + T + ++A ++ + + I+ GL TKA KN+
Sbjct: 97 LVAVVLSAQATDAGVNKATRPLFAVADTPQKMIALGEEQLRDYIKTIGLYRTKA---KNV 153
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ KL E+ G + +AEL G G KT VL + VDTHVF
Sbjct: 154 IAL----SQKLISEF--GGEVPRTRAELESLPGAGRKTANVVLNMAFGEHTMAVDTHVFR 207
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ G P + L L + IP E + L HG+
Sbjct: 208 VGNRTGLAPGKTPL-EVELGLEKVIPAEFMLHAHHWLILHGR 248
>gi|406982493|gb|EKE03804.1| Endonuclease III [uncultured bacterium]
Length = 211
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 21/193 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T + + A L + T + L ++ I+ AI G K I I
Sbjct: 36 LIACLLSLRTKDETTYGATLRLFNLGSTPDDFLKLNEEEIQKAIYPVGFYRNKTGVILGI 95
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LL+ G+ DEI EL + +G+G KT V+ + VDTHV
Sbjct: 96 CRDLLDK--------YNGIVPDEID-ELLKLKGVGRKTANLVVSKGYGKPAICVDTHVHR 146
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS +G+V T + ++T + L +++PK+ +N L+ THG+ C+ K
Sbjct: 147 ISNRLGFVKT-KNPDETEMALREKLPKKYWNKINDLMVTHGQNTCKPVNPK--------- 196
Query: 265 AGNLCPLLNYCEK 277
N+C + YC+K
Sbjct: 197 -CNICTIEPYCQK 208
>gi|120553864|ref|YP_958215.1| endonuclease III [Marinobacter aquaeolei VT8]
gi|120323713|gb|ABM18028.1| endonuclease III [Marinobacter aquaeolei VT8]
Length = 212
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 75/190 (39%), Gaps = 23/190 (12%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD N P Y + + L+ +LS T+ KA L T E +LA
Sbjct: 14 RDANPNPTTELNYS-----TPFELLIAVILSAQATDVGVNKATDKLFPVANTPEAILALG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
++ I+ GL +KA + + L+E G + + +L G+G
Sbjct: 69 VDGLKEYIKTIGLFNSKAENVIKTCRILIEKHGS---------EVPARREDLEALPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQR----IPKELKFD 237
KT VL +Q VDTH+F +S G P K L + +R +PKE D
Sbjct: 120 KTANVVLNTAFRQPAMAVDTHIFRVSNRTGIAP-----GKNVLEVEKRLLRLVPKEFLMD 174
Query: 238 LNCLLYTHGK 247
+ L HG+
Sbjct: 175 AHHWLILHGR 184
>gi|374702607|ref|ZP_09709477.1| endonuclease III [Pseudomonas sp. S9]
Length = 212
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 81/201 (40%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + ++ GL P+KA I
Sbjct: 33 LIAVILSAQATDVGVNKATAKLYPVANTPEAIYALGYDGLCEYVKTIGLYPSKAKNIVET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E L + E + L G+G KT VL +Q VDTH+F
Sbjct: 93 CRMLIE---------LHNSQVPETREALEALPGVGRKTANVVLNTAFRQFTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
S G P K L + ++ +PK+ D + + HG+ +C +
Sbjct: 144 FSNRTGVAP-----GKNVLEVEKKLLKFVPKDFLLDAHHWMILHGRYVC---------QA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE KT
Sbjct: 190 RKPRCGS-CRIEDLCEYKQKT 209
>gi|237653896|ref|YP_002890210.1| endonuclease III [Thauera sp. MZ1T]
gi|237625143|gb|ACR01833.1| endonuclease III [Thauera sp. MZ1T]
Length = 213
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+ + A L + PT E +++ ++ I I+ GL KA +
Sbjct: 36 LVAVVLSAQATDRSVNLATRKLFALAPTPEAMVSLGEEGIAECIKSIGLFRNKAKNTLAL 95
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G + ++ L G+G KT VL +Q VDTH+F
Sbjct: 96 SRLLLERHGG---------EVPAVREALEALPGVGRKTANVVLNTVFRQPAMAVDTHIFR 146
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
++ G P D + L +R+PK+ D + L HG+
Sbjct: 147 LANRTGLAP-GKDVLEVEKALLRRVPKDYLLDAHHWLILHGR 187
>gi|15674949|ref|NP_269123.1| endonuclease III [Streptococcus pyogenes SF370]
gi|71910543|ref|YP_282093.1| endonuclease III [Streptococcus pyogenes MGAS5005]
gi|410680407|ref|YP_006932809.1| endonuclease III [Streptococcus pyogenes A20]
gi|13622093|gb|AAK33844.1| putative endonuclease III (DNA repair) [Streptococcus pyogenes M1
GAS]
gi|71853325|gb|AAZ51348.1| endonuclease III [Streptococcus pyogenes MGAS5005]
gi|395453786|dbj|BAM30125.1| endonuclease III [Streptococcus pyogenes M1 476]
gi|409692996|gb|AFV37856.1| endonuclease III [Streptococcus pyogenes A20]
Length = 218
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 26/210 (12%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E + E+ L+ +LS TT+ K L ++P E + AE +ENA+R GL
Sbjct: 25 ELDWETPFQLLIAVILSAQTTDKAVNKVTPGLWQSYPEIEDLAFAELSDVENALRTIGLY 84
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA KNI+K + + +G + + EL G+G KT VL
Sbjct: 85 KNKA---KNIIKT-----AQAIRDDFKG-QVPKTHKELESLPGVGRKTANVVLAEVYGVP 135
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC----RN 251
VDTHV +SK + AD + L +IPK+ + TH +L +
Sbjct: 136 AIAVDTHVARVSKRLNISSPDADVKQIEADLMAKIPKK------DWIITHHRLIFFGRYH 189
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K+ +CP+ +YC+ T
Sbjct: 190 CLA-------KKPKCEICPVQSYCKYYQDT 212
>gi|405355393|ref|ZP_11024619.1| Endonuclease III [Chondromyces apiculatus DSM 436]
gi|397091735|gb|EJJ22537.1| Endonuclease III [Myxococcus sp. (contaminant ex DSM 436)]
Length = 256
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 98/226 (43%), Gaps = 20/226 (8%)
Query: 47 EFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFAS 106
E V + +R M R +P E D + L+ LV +LS T+ +
Sbjct: 25 ETVAEKRKRALTVMDRLAADMPDARIELDY---RTPLELLVAVMLSAQCTDKRVNIVTPA 81
Query: 107 LKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLL-ESKGKLCLEYLRGLS 165
L FP+ + AE +E IR GL KA I + L+ E G++ L+
Sbjct: 82 LFQRFPSAQTYAEAEPSDVEPFIRTCGLYRAKAKNIVAAARTLVAEHAGQVPLK------ 135
Query: 166 IDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYL 224
+ L + G+G KT A V+ HL DD FPVDTHV ++ +G+ T D +K
Sbjct: 136 ----RDTLEKLPGVGRKT-AGVVCIHLGGDDAFPVDTHVKRLAYRLGFT-TKEDPDKVEA 189
Query: 225 HLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCP 270
+ +P E + LL HG+ R C + + R A +LCP
Sbjct: 190 DMQAVLPSERWTLGHQLLVWHGR--RTCFARSPDCARCVVA-DLCP 232
>gi|297843388|ref|XP_002889575.1| hypothetical protein ARALYDRAFT_470604 [Arabidopsis lyrata subsp.
lyrata]
gi|297335417|gb|EFH65834.1| hypothetical protein ARALYDRAFT_470604 [Arabidopsis lyrata subsp.
lyrata]
Length = 384
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 90/219 (41%), Gaps = 26/219 (11%)
Query: 43 GFPPEFVKY---RNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEAN 99
G PPE K Q++K + N+V D +E L+ T+LS T E
Sbjct: 136 GIPPENWKKVLEGIQKMKSSEEAPANAVECDRTGSFLPPKERRFYVLIGTLLSSQTKEHI 195
Query: 100 SLKAFASL-KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILK-CLLESKGKLC 157
+ A L ++ T E + A++ I+ I G KA +K + K CL++ G
Sbjct: 196 TGAAVERLHQNGLLTPEAIDKADESTIKELIYPVGFYTRKATNVKKVAKICLMKYDG--- 252
Query: 158 LEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP---VDTHVFEISKAIGWVP 214
I EL G+GPK VL H+ +D VDTHV I +GWV
Sbjct: 253 -------DIPRTLEELLSLPGVGPKIAHLVL--HVAWNDVQGICVDTHVHRICNRLGWVS 303
Query: 215 TAADRNKTY------LHLNQRIPKELKFDLNCLLYTHGK 247
+ KT + L Q +PKE +N LL G+
Sbjct: 304 KPGTKQKTLSPEETRVALQQWLPKEEWVAINFLLVGFGQ 342
>gi|206895438|ref|YP_002247351.1| endonuclease III [Coprothermobacter proteolyticus DSM 5265]
gi|206738055|gb|ACI17133.1| endonuclease III [Coprothermobacter proteolyticus DSM 5265]
Length = 209
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 20/176 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T + + L S +PT + A +EN ++ G KA +++
Sbjct: 35 LLSCILSARTKDEITYPTADRLFSFYPTPLSLCQAHLTDLENILKPVGFYRQKAKYVRDA 94
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
C +E G + + +L++ GIGPK A V F D VD HV
Sbjct: 95 -ACYIEKWG-----------VPKTTKQLTQVPGIGPKCAAIVRAFGWGIPDIAVDAHVQR 142
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCI 253
ISK +GW D +T L +P +N LL + G+ LC C+
Sbjct: 143 ISKRLGWTEEKDDHLRTQTKLKTLLPIHEWVYVNHLLVSLGRHVCRPQRPLCHQCV 198
>gi|149908207|ref|ZP_01896871.1| endonuclease III, putative (nth2) [Moritella sp. PE36]
gi|149808749|gb|EDM68682.1| endonuclease III, putative (nth2) [Moritella sp. PE36]
Length = 230
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
+V +L+QNT N KA A+L T + +LA + IR G KA +K +
Sbjct: 48 MVGAILTQNTNWKNVEKALANLAGKL-TPQQILAMPVDTLAQLIRSSGYYNQKAIKLKAL 106
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L + + R + ++ EL GIGP+T +L++ L + F +D +
Sbjct: 107 --TLWYQEYDFDISQARCIEGTILRNELLAVNGIGPETADSILVYALDKTFFIIDNYTRR 164
Query: 206 ISKAIGW-VPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTHGKLCRNCIK 254
I IG+ +PT D+ + L L Q IP+++ + LL H K R C K
Sbjct: 165 ILHRIGFELPTGYDKLR--LLLEQNIPRDITTYQQYHALLVEHAK--RYCTK 212
>gi|383479909|ref|YP_005388803.1| endonuclease III protein Nth [Streptococcus pyogenes MGAS15252]
gi|383493824|ref|YP_005411500.1| endonuclease III protein Nth [Streptococcus pyogenes MGAS1882]
gi|378927899|gb|AFC66105.1| endonuclease III protein Nth [Streptococcus pyogenes MGAS15252]
gi|378929552|gb|AFC67969.1| endonuclease III protein Nth [Streptococcus pyogenes MGAS1882]
Length = 218
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 26/210 (12%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E + E+ L+ +LS TT+ K L ++P E + AE +ENA+R GL
Sbjct: 25 ELDWETPFQLLIAVILSAQTTDKAVNKVTPGLWQSYPEIEDLAFAELSDVENALRTIGLY 84
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA KNI+K + + +G + + EL G+G KT VL
Sbjct: 85 KNKA---KNIIKT-----AQAIRDDFKG-QVPKTHEELESLPGVGRKTANVVLAEVYGVP 135
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC----RN 251
VDTHV +SK + AD + L +IPK+ + TH +L +
Sbjct: 136 AIAVDTHVARVSKRLNISSLDADVKQIEADLMAKIPKK------DWIITHHRLIFFGRYH 189
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K+ +CP+ +YC+ T
Sbjct: 190 CLA-------KKPKCEICPVQSYCKYYQNT 212
>gi|15921690|ref|NP_377359.1| endonuclease III [Sulfolobus tokodaii str. 7]
gi|342306469|dbj|BAK54558.1| DNA glycosylase/AP lyase [Sulfolobus tokodaii str. 7]
Length = 224
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 82 VLDGLVKTVLSQNTTEANSLKAFASLKSTF-PTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
V V T+LSQN+T+ + A+ +L++ T + +L+ + ++ I+ GL+ +KA
Sbjct: 34 VFKTFVATILSQNSTDKATYVAYNNLENKIGVTVDKILSISEDELKEVIKIVGLSNSKAR 93
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
IKNI L + K+ + L L D+++ GIG KT VL+ + FPVD
Sbjct: 94 YIKNI--ALFFKRNKI--DELTRLPCDKLRELFLTVDGIGEKTADVVLVNCFKCKFFPVD 149
Query: 201 THVFEISKAIGWV 213
TH+ + +G +
Sbjct: 150 THIKRVMSRLGIL 162
>gi|335424561|ref|ZP_08553569.1| endonuclease III [Salinisphaera shabanensis E1L3A]
gi|334888899|gb|EGM27194.1| endonuclease III [Salinisphaera shabanensis E1L3A]
Length = 215
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 80/199 (40%), Gaps = 23/199 (11%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD N P +Y+ S + LV +LS T+ KA A L T + +L
Sbjct: 14 RDANPNPQTELQYN-----SAFELLVAVILSAQATDIGVNKATAKLFPVANTPQAILDLG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
+ +++ ++ GL +KAA I + L++ + + + EL G+G
Sbjct: 69 EDGLKDYVKTIGLYNSKAANIMKTCRALVDEHDG---------EVPDTREELVALPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL + VDTH+F +S G P R L + +PK D +
Sbjct: 120 KTANVVLNTAFGKPAMAVDTHIFRVSNRTGIAPGKTVR-AVEDRLMRLVPKAFLLDAHHW 178
Query: 242 LYTHGK--------LCRNC 252
L HG+ LC +C
Sbjct: 179 LILHGRYVCKARKPLCDDC 197
>gi|421465462|ref|ZP_15914149.1| endonuclease III [Acinetobacter radioresistens WC-A-157]
gi|400203729|gb|EJO34714.1| endonuclease III [Acinetobacter radioresistens WC-A-157]
Length = 238
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 86/212 (40%), Gaps = 35/212 (16%)
Query: 48 FVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASL 107
F + R QR H T K S P ++ LV LS T+ + KA L
Sbjct: 21 FERLRQQR-PHPTTELKFSSPFEL--------------LVAVTLSAQATDVSVNKATDKL 65
Query: 108 KSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSID 167
T E + A + ++ I+ GL KA +N++K K+ +E G +
Sbjct: 66 FPVANTPEAIYALGVEGLKAYIKTIGLYNAKA---ENVIKAC-----KILIEQHNG-QVP 116
Query: 168 EIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLN 227
E +AEL G+G KT VL Q VDTH+F + G P K L +
Sbjct: 117 ETRAELEALPGVGRKTANVVLNTAFGQPTMAVDTHIFRVGNRTGLAP-----GKNVLEVE 171
Query: 228 QRI----PKELKFDLNCLLYTHGKLCRNCIKK 255
Q++ PKE D + L HG+ CI +
Sbjct: 172 QQLLKVMPKEFIVDAHHWLILHGRY--TCIAR 201
>gi|260597793|ref|YP_003210364.1| endonuclease III [Cronobacter turicensis z3032]
gi|429100342|ref|ZP_19162316.1| Endonuclease III [Cronobacter turicensis 564]
gi|260216970|emb|CBA30609.1| Endonuclease III [Cronobacter turicensis z3032]
gi|426286991|emb|CCJ88429.1| Endonuclease III [Cronobacter turicensis 564]
Length = 211
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T E +LA ++ I+ GL +KA
Sbjct: 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPEAMLALGVDGVKEYIKTIGLFNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + LLE G + E +A L G+G KT VL VD
Sbjct: 88 NVIKTCRILLEQHGG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S + P + L + +P E K D + L HG+ CI
Sbjct: 139 THIFRVSNRTKFAP-GKNVEAVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE + K
Sbjct: 190 RKPRCGS-CIIEDLCEYAEKV 209
>gi|183602757|ref|ZP_02964120.1| endonuclease III [Bifidobacterium animalis subsp. lactis HN019]
gi|219683144|ref|YP_002469527.1| endonuclease III [Bifidobacterium animalis subsp. lactis AD011]
gi|241191477|ref|YP_002968871.1| putative EndoIII-related endonuclease [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241196882|ref|YP_002970437.1| putative EndoIII-related endonuclease [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|384194472|ref|YP_005580218.1| endonuclease III [Bifidobacterium animalis subsp. lactis BLC1]
gi|384196038|ref|YP_005581783.1| Putative EndoIII-related endonuclease [Bifidobacterium animalis
subsp. lactis V9]
gi|387821338|ref|YP_006301381.1| Endonuclease III [Bifidobacterium animalis subsp. lactis B420]
gi|387823021|ref|YP_006302970.1| Endonuclease III [Bifidobacterium animalis subsp. lactis Bi-07]
gi|423680007|ref|ZP_17654883.1| endonuclease III [Bifidobacterium animalis subsp. lactis BS 01]
gi|183217995|gb|EDT88643.1| endonuclease III [Bifidobacterium animalis subsp. lactis HN019]
gi|219620794|gb|ACL28951.1| endonuclease III [Bifidobacterium animalis subsp. lactis AD011]
gi|240249869|gb|ACS46809.1| Putative EndoIII-related endonuclease [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240251436|gb|ACS48375.1| Putative EndoIII-related endonuclease [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|295794469|gb|ADG34004.1| Putative EndoIII-related endonuclease [Bifidobacterium animalis
subsp. lactis V9]
gi|345283331|gb|AEN77185.1| endonuclease III [Bifidobacterium animalis subsp. lactis BLC1]
gi|366041006|gb|EHN17519.1| endonuclease III [Bifidobacterium animalis subsp. lactis BS 01]
gi|386654039|gb|AFJ17169.1| Endonuclease III [Bifidobacterium animalis subsp. lactis B420]
gi|386655629|gb|AFJ18758.1| Endonuclease III [Bifidobacterium animalis subsp. lactis Bi-07]
Length = 247
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 81/200 (40%), Gaps = 24/200 (12%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LS TT+ L T+PT + A + +E+ IR G KA I +
Sbjct: 40 LVATILSAQTTDKRVNSITPELFGTYPTAAALADARLEDVESIIRPLGFYHVKAEHIIAV 99
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ ++E G I + EL+ G+G KT VL + FPVDTHV
Sbjct: 100 ARQIVERFGG---------QIPQTMEELTSLPGVGRKTANVVLGNAFRVPGFPVDTHVIR 150
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRI----PKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
++ + W + T + Q I P+ DL+ L G+ +C +
Sbjct: 151 VTGRLHWRDDWMKTSTTPERIEQEITGCFPESEWTDLSHRLIIFGRNICTS--------- 201
Query: 261 RKESAGNLCPLLNYCEKSNK 280
R N CPLL C + +
Sbjct: 202 RSPECEN-CPLLPTCPSAGE 220
>gi|296133862|ref|YP_003641109.1| endonuclease III [Thermincola potens JR]
gi|296032440|gb|ADG83208.1| endonuclease III [Thermincola potens JR]
Length = 208
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 17/198 (8%)
Query: 60 MTRDKNSVPLDMNEYDEGEEESVLDG------LVKTVLSQNTTEANSLKAFASLKSTFPT 113
M D+ + L E + G+ + L+ LV TVLS T+ K +L + F T
Sbjct: 1 MAADRVQMILQALEKEYGDAGTALNYRNPFELLVATVLSAQCTDERVNKVTPALFAKFGT 60
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
E + A K +E I+ GL KA + L+ + KL E+ +G D ++ EL
Sbjct: 61 PEKMSKAPVKEVEELIKSCGLYHNKA-------RNLVAASKKLVAEF-KGQVPDTLQ-EL 111
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233
G+G KT VL +D VDTHVF ++ +G ++ KT L + IP++
Sbjct: 112 ISLPGVGRKTANVVLSNAFARDAIAVDTHVFRVANRLGLADSSTPL-KTEADLMRAIPRD 170
Query: 234 LKFDLNCLLYTHG-KLCR 250
+ L HG K+C+
Sbjct: 171 KWSRAHHWLIHHGRKVCK 188
>gi|158425308|ref|YP_001526600.1| endonuclease III/Nth [Azorhizobium caulinodans ORS 571]
gi|158332197|dbj|BAF89682.1| endonuclease III/Nth precursor [Azorhizobium caulinodans ORS 571]
Length = 359
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+ KA L + PT + + A ++ + IR GL KA KN+
Sbjct: 182 LVAVVLSAQATDVGVNKATRGLFAAAPTPKAMFALGEEGVAQFIRTLGLYRGKA---KNV 238
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
++ +L LE G+ + + L G+G KT VL VDTH+F
Sbjct: 239 VEL-----SRLLLEKHDGV-VPPDREALEALPGVGRKTANVVLNIAFGLPTIAVDTHLFR 292
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
++ G P A + L L +RIP K + L HG+ +C+
Sbjct: 293 VANRTGLAPGATPLD-VELALEKRIPDRFKLHAHHWLILHGRYICK 337
>gi|153006575|ref|YP_001380900.1| endonuclease III [Anaeromyxobacter sp. Fw109-5]
gi|152030148|gb|ABS27916.1| endonuclease III [Anaeromyxobacter sp. Fw109-5]
Length = 226
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 19/200 (9%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPT 137
E E L+ LV +LS +T+A +A +L + + T AA + + IR GL
Sbjct: 37 EFEDDLELLVSVILSAQSTDAGVNRATPALFARYRTAADYGAAAPEDLWPFIRSLGLYRN 96
Query: 138 KAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDF 197
KA I ++ + G + + L G+G KT VL+ F
Sbjct: 97 KAKAIVAAMRAIATEHGG---------RVPRTREALEALPGVGRKTAGVVLVHLGAAHAF 147
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGG 257
PVDTHV +S+ +G + D +K L +P+E + + L HG+ R C
Sbjct: 148 PVDTHVGRVSRRLG-LTRHEDPSKVEQDLMALLPEERWGEAHQLFVWHGR--RTC----- 199
Query: 258 NRQRKESAGNLCPLLNYCEK 277
+ A + CP+ C K
Sbjct: 200 --DARRPACSRCPVEELCPK 217
>gi|365904081|ref|ZP_09441840.1| DNA-(apurinic or apyrimidinic site) lyase [Lactobacillus
versmoldensis KCTC 3814]
Length = 217
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 73 EYDEGEEESVLDG------LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIE 126
E D G E LD LV +LS T+ + K L + +P + ++ A +E
Sbjct: 15 EADIGPVEPSLDSRTPFQYLVSVILSAQATDVSVNKVTPILFAKYPDPKDLMNANLSDVE 74
Query: 127 NAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVAC 186
I+ GL KA KNI+K + G + +Y + EI++E+ + G G KT
Sbjct: 75 EMIKSVGLFHNKA---KNIIK----TAGLIHTQY--NDVVPEIRSEIMKLPGAGRKTANV 125
Query: 187 VLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKEL 234
VL Q F VDTHV ISK + +V D+ T + + ++I L
Sbjct: 126 VLSDVFHQATFAVDTHVSAISKRLHFV----DQKATPVQVEKKIVSAL 169
>gi|206602825|gb|EDZ39306.1| Putative endonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 210
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 23/194 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T ++ ++ A L P + E IE+ I G TKA IK I
Sbjct: 31 LIMTILSLRTKDSVTMPASQRLFEKAPDLPSLSQMEISDIESLIFPVGFYRTKAKTIKTI 90
Query: 146 L-KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
+ L E +GK+ E L GL LS G+G KT VL +++ F VD HV
Sbjct: 91 AERVLTEFEGKIP-ETLEGL--------LS-LPGVGLKTANLVLTVGFEKEGFCVDIHVH 140
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKE 263
I G + T + ++TY + +P++ K N LL + G+ CR
Sbjct: 141 RILNRWGVIQTHSP-DETYRIVEPVLPRKWKRRANALLVSFGQHFCRPV----------S 189
Query: 264 SAGNLCPLLNYCEK 277
++CPLL C++
Sbjct: 190 PFCSVCPLLPDCDR 203
>gi|319790163|ref|YP_004151796.1| DNA-(apurinic or apyrimidinic site) lyase [Thermovibrio
ammonificans HB-1]
gi|317114665|gb|ADU97155.1| DNA-(apurinic or apyrimidinic site) lyase [Thermovibrio
ammonificans HB-1]
Length = 219
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 21/193 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV TVLS T + + +A L T E +L ++ I + I G KA +K I
Sbjct: 40 LVATVLSLRTKDEVTAEAARRLFQVADTPEKLLKLSEEEIASLIYPVGFYNRKAKNLKEI 99
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G L EL + G+G KT V+ ++ VDTHV
Sbjct: 100 ARILVEHYGGQVPSDLE---------ELLKLPGVGRKTANLVVTQGFKKPGICVDTHVHR 150
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
I +G+V T +T L +++PKE ++N LL G+ +CR K
Sbjct: 151 IMNRLGFVKTKTP-EETEFALREKLPKEFWIEINDLLVALGQHICRPISPKCSQ------ 203
Query: 265 AGNLCPLLNYCEK 277
CP+ + C+K
Sbjct: 204 ----CPIEHLCKK 212
>gi|387814765|ref|YP_005430252.1| DNA glycosylase and apyrimidinic (AP) lyase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381339782|emb|CCG95829.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 212
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 18/166 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA L T E +LA ++ I+ GL +KA +
Sbjct: 33 LIAVILSAQATDVGVNKATDKLFPVANTPEAILALGVDGLKEYIKTIGLFNSKAENVIKT 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + +L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILIEKHGS---------EVPARREDLEALPGVGRKTANVVLNTAFRQPAMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK 247
+S G P K L + +R +PKE D + L HG+
Sbjct: 144 VSNRTGIAP-----GKNVLEVEKRLVRLVPKEFLMDAHHWLILHGR 184
>gi|429104460|ref|ZP_19166329.1| Endonuclease III [Cronobacter malonaticus 681]
gi|429110139|ref|ZP_19171909.1| Endonuclease III [Cronobacter malonaticus 507]
gi|426291183|emb|CCJ92442.1| Endonuclease III [Cronobacter malonaticus 681]
gi|426311296|emb|CCJ98022.1| Endonuclease III [Cronobacter malonaticus 507]
Length = 211
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 82/201 (40%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T E +LA ++ I+ GL +KA
Sbjct: 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPEAMLALGVDGVKEYIKTIGLFNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + LLE G + E +A L G+G KT VL VD
Sbjct: 88 NVIKTCRILLEQHGG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S + P + L + +P E K D + L HG+ CI
Sbjct: 139 THIFRVSNRTKFAP-GKNVEAVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE + K
Sbjct: 190 RKPRCGS-CIIEDLCEYAEKV 209
>gi|301782301|ref|XP_002926577.1| PREDICTED: LOW QUALITY PROTEIN: endonuclease III-like protein
1-like [Ailuropoda melanoleuca]
Length = 316
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 85/226 (37%), Gaps = 25/226 (11%)
Query: 47 EFVKYRNQRLKHNMTRDKNSVPLDM----NEYDEGEEESV--LDGLVKTVLSQNTTEANS 100
E + +R Q R + P+D + YD V L+ +LS T + +
Sbjct: 89 EPLAWRQQLQNIRTMRSEKDAPVDQLGAEHCYDPSAPPKVRRYQVLLSLMLSSQTKDQVT 148
Query: 101 LKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEY 160
A L+S T + +L + + I G +K IK L + G
Sbjct: 149 AGAMQRLRSRGLTVDSILQTDDSTLGTLIYPVGFWRSKVKYIKQTSAILQQRYGG----- 203
Query: 161 LRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAIGWVPTAADR 219
I AEL G+GPK + VDTHV I+ +GW TA
Sbjct: 204 ----DIPATVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANRLGWTETATKS 259
Query: 220 -NKTYLHLNQRIPKELKFDLNCLLYTHGKL--------CRNCIKKG 256
KT L +P+EL ++N LL G+ C++C+ +G
Sbjct: 260 PEKTRAALEAWLPRELWSEINGLLVGFGQQVCLPTHPRCQDCLNRG 305
>gi|18977601|ref|NP_578958.1| glycosylase [Pyrococcus furiosus DSM 3638]
gi|397651727|ref|YP_006492308.1| endonuclease III [Pyrococcus furiosus COM1]
gi|18893320|gb|AAL81353.1| glycosylase putative; mutY-nth family [Pyrococcus furiosus DSM
3638]
gi|393189318|gb|AFN04016.1| endonuclease III [Pyrococcus furiosus COM1]
Length = 225
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 18/193 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L++ ++SQ + + K L + + E + + ++ +R K KN
Sbjct: 47 LIRCIISQRNRDEVTDKVSEELFKRYKSIEEIANESVENMQEFLR-----KQKVGLWKNK 101
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K ++E+ + +Y G + EL + GIG K VL + + PVDTHV+
Sbjct: 102 GKWIVEASRIILYKY--GGKVPNTLEELMKLPGIGRKCANIVLAYGFGKPAIPVDTHVYR 159
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS+ +G P + K L IP E +N + HGK +CR K
Sbjct: 160 ISRRLGLAPINSTPEKVEEILKTLIPVEEWIYVNHAMVDHGKSICRPIKPK--------- 210
Query: 265 AGNLCPLLNYCEK 277
LCPL C K
Sbjct: 211 -CELCPLNELCPK 222
>gi|357061372|ref|ZP_09122129.1| endonuclease III [Alloprevotella rava F0323]
gi|355374445|gb|EHG21740.1| endonuclease III [Alloprevotella rava F0323]
Length = 215
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 10/181 (5%)
Query: 68 PLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIEN 127
P+ N E ++ LV TVLS T+ +L +FPT + A + I
Sbjct: 16 PIHGNVETELHFQTPFQLLVATVLSAQCTDKRVNMVTPALFESFPTPVEMSQATPEAIFE 75
Query: 128 AIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACV 187
IR KA K L+E K+ +E +G + + +L++ G+G KT V
Sbjct: 76 YIRSVSYPNAKA-------KHLVEL-AKMLVEKFQG-EVPQTLEQLTQLPGVGRKTANVV 126
Query: 188 LMFHLQQDDFPVDTHVFEISKAIGWVPTAADR-NKTYLHLNQRIPKELKFDLNCLLYTHG 246
L Q VDTH++ ++ +G VP +A+ K + L + IP+E + L HG
Sbjct: 127 LAVAFGQAALAVDTHIYRVAHRLGLVPASANTPYKVEMALRKFIPEEDVAHSHFWLLLHG 186
Query: 247 K 247
+
Sbjct: 187 R 187
>gi|386812677|ref|ZP_10099902.1| endonuclease III [planctomycete KSU-1]
gi|386404947|dbj|GAB62783.1| endonuclease III [planctomycete KSU-1]
Length = 215
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 77 GEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAP 136
+E + L+ +LS T + + +A L + T + + + +E I G
Sbjct: 27 SKERTPFHVLISCILSLRTKDKTTHEASHRLFAVVNTPKDMAEIPTEKLEKLIYPVGFYR 86
Query: 137 TKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD 196
KA IK I K L+++ RG DEI EL + G+G KT V+ ++
Sbjct: 87 VKAKNIKEICKELVKT--------YRGKVPDEID-ELLKLSGVGRKTANLVVTLGYKKPG 137
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKK 255
VDTHV I+ G+V T + +T L +++PKE +N LL T G+ +C K
Sbjct: 138 ICVDTHVHRITNRWGYVKTKNPK-ETEFALREKLPKEYWLIINDLLVTFGQNICVPISPK 196
Query: 256 GGNRQRKESAGNLCPLLNYCEKSNKT 281
+ CP+ YC+K T
Sbjct: 197 ----------CSFCPVNMYCQKVGVT 212
>gi|118579102|ref|YP_900352.1| HhH-GPD family protein [Pelobacter propionicus DSM 2379]
gi|118501812|gb|ABK98294.1| HhH-GPD family protein [Pelobacter propionicus DSM 2379]
Length = 218
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
E S LV ++S T + + A A + + + E +L + I I G TK
Sbjct: 32 ERSPFKVLVSCIISLRTKDEVTAAASARMFARADSAERMLKLAEDEIAALIYPAGFYRTK 91
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A I I L+ G G DE++ +L RFRG+G KT VL +
Sbjct: 92 AGQIHGIAHRLVTEFG--------GNVPDEME-DLLRFRGVGRKTANLVLTLGFGKPGIC 142
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
VDTHV I +G+V T + +T + L ++P E +N LL G+
Sbjct: 143 VDTHVHRICNRLGYVSTRSP-EQTEMALRAQLPGEYWIAINDLLVAFGQ 190
>gi|281342124|gb|EFB17708.1| hypothetical protein PANDA_016228 [Ailuropoda melanoleuca]
Length = 266
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 85/226 (37%), Gaps = 25/226 (11%)
Query: 47 EFVKYRNQRLKHNMTRDKNSVPLDM----NEYDEGEEESV--LDGLVKTVLSQNTTEANS 100
E + +R Q R + P+D + YD V L+ +LS T + +
Sbjct: 42 EPLAWRQQLQNIRTMRSEKDAPVDQLGAEHCYDPSAPPKVRRYQVLLSLMLSSQTKDQVT 101
Query: 101 LKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEY 160
A L+S T + +L + + I G +K IK L + G
Sbjct: 102 AGAMQRLRSRGLTVDSILQTDDSTLGTLIYPVGFWRSKVKYIKQTSAILQQRYGG----- 156
Query: 161 LRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAIGWVPTAADR 219
I AEL G+GPK + VDTHV I+ +GW TA
Sbjct: 157 ----DIPATVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANRLGWTETATKS 212
Query: 220 -NKTYLHLNQRIPKELKFDLNCLLYTHGKL--------CRNCIKKG 256
KT L +P+EL ++N LL G+ C++C+ +G
Sbjct: 213 PEKTRAALEAWLPRELWSEINGLLVGFGQQVCLPTHPRCQDCLNRG 258
>gi|393764771|ref|ZP_10353372.1| endonuclease III [Methylobacterium sp. GXF4]
gi|392729767|gb|EIZ87031.1| endonuclease III [Methylobacterium sp. GXF4]
Length = 260
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+ A L + T E +LA ++ + IR GL TKA + +
Sbjct: 82 LVAVVLSAQATDRGVNLATGPLFAVADTPEKMLALGEETVRGFIRTIGLFNTKAKNVIAL 141
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G L L + G+G KT + VL Q VDTH+F
Sbjct: 142 SRILVEQHGGAVPASLEALQV---------LPGVGAKTASVVLNIAFQVPRIAVDTHIFR 192
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+S I + +K L +P+ + + L HG+
Sbjct: 193 VSNRIPLF-VGSTTDKVQAGLEAIVPEPYRLHAHHWLILHGR 233
>gi|387889576|ref|YP_006319874.1| endonuclease III [Escherichia blattae DSM 4481]
gi|414593144|ref|ZP_11442792.1| endonuclease III [Escherichia blattae NBRC 105725]
gi|386924409|gb|AFJ47363.1| endonuclease III [Escherichia blattae DSM 4481]
gi|403195977|dbj|GAB80444.1| endonuclease III [Escherichia blattae NBRC 105725]
Length = 211
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 30/233 (12%)
Query: 53 NQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP 112
N R + +TR + P E + + + L+ +LS T+ + KA A L
Sbjct: 3 NARRREILTRLRAENPHPTTEL---QFTTPFELLIAVMLSAQATDVSVNKATAKLYPVAN 59
Query: 113 TWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAE 172
T E +LA + ++ IR GL +KA + + L+E L + E +A
Sbjct: 60 TPEAILALGVEGLKTYIRTIGLYNSKAENVIKTCRMLIE---------LHHSQVPEDRAA 110
Query: 173 LSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQR--- 229
L G+G KT VL VDTH+F + G+ P KT + ++
Sbjct: 111 LEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTGFAP-----GKTVEQVEEKLLK 165
Query: 230 -IPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
+P E K D + L HG+ CI RK G+ C + + C+ KT
Sbjct: 166 VVPAEFKTDCHHWLILHGRY--TCI------ARKPRCGS-CLIEDLCDYKEKT 209
>gi|197124070|ref|YP_002136021.1| endonuclease III [Anaeromyxobacter sp. K]
gi|196173919|gb|ACG74892.1| endonuclease III [Anaeromyxobacter sp. K]
Length = 230
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 13/191 (6%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
E L LV +LS +T+A K +L + FP A+ + + IR GL
Sbjct: 43 EDDLQLLVSVILSAQSTDAGVNKVTPALFARFPDAAAYAGAQPEELWPYIRSLGL----- 97
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
+N K ++ + G + E+ G + + L G+G KT VL+ + FPV
Sbjct: 98 --FRNKAKAIVAAMGAIAREH--GGRVPRTREALEALPGVGRKTAGVVLVHLGAAEAFPV 153
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNR 259
DTHV +S+ +G + D ++ L +P+ + L HG+ R C +
Sbjct: 154 DTHVGRVSRRLG-LTREQDPDRVERDLMALLPESRWGRGHQLFVWHGR--RTCAARAPAC 210
Query: 260 QRKESAGNLCP 270
R A +LCP
Sbjct: 211 SRCVVA-DLCP 220
>gi|339630005|ref|YP_004721648.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfobacillus
acidophilus TPY]
gi|379009107|ref|YP_005258558.1| endonuclease III [Sulfobacillus acidophilus DSM 10332]
gi|339287794|gb|AEJ41905.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Sulfobacillus acidophilus TPY]
gi|361055369|gb|AEW06886.1| endonuclease III, DNA-(apurinic or apyrimidinic site) lyase
[Sulfobacillus acidophilus DSM 10332]
Length = 217
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 78/195 (40%), Gaps = 19/195 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LS T+ L FP + A +E IR GL TKA +N+
Sbjct: 32 LVATMLSAQCTDRRVNMITPRLFRRFPDAFALAEALLADVEELIRDCGLYHTKA---QNL 88
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
++ ++ E RG + + L G+G KT VL D VDTHVF
Sbjct: 89 IR-----TARVIAETYRG-EVPADRDALMALPGVGRKTANVVLSNAFGVDALAVDTHVFR 142
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S +GW A D T L IP+ L + L HG+ C ++ +
Sbjct: 143 VSHRLGWS-NAKDPAGTEQQLMALIPQALWSKAHHWLIYHGRYCCKAVRPLCHE------ 195
Query: 266 GNLCPLLNYCEKSNK 280
CPL + C + +
Sbjct: 196 ---CPLADLCPSAER 207
>gi|315122204|ref|YP_004062693.1| endonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495606|gb|ADR52205.1| endonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 177
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 87 VKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146
+ +LS +T+ N KA SL T + +LA +K ++N I+ G+ KA I ++
Sbjct: 3 IAVLLSAQSTDVNVNKATKSLFDIADTPQKMLAIGEKNLQNHIKTIGIYRRKAKNIISLS 62
Query: 147 KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEI 206
L+ I + EL+R GIG K +L VDTH+F I
Sbjct: 63 HTLINEFDS---------EIPKTLEELTRLSGIGRKGANVILSMAFGIPTIGVDTHIFRI 113
Query: 207 SKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL--------CRNCI 253
+ IG P N+ L + IP++ +++ + L HG+ C++C+
Sbjct: 114 ANRIGLAP-GKTPNQVEQSLLRIIPQKHQYNAHYWLVLHGRYVCKARKPQCQSCV 167
>gi|374300499|ref|YP_005052138.1| HhH-GPD family protein [Desulfovibrio africanus str. Walvis Bay]
gi|332553435|gb|EGJ50479.1| HhH-GPD family protein [Desulfovibrio africanus str. Walvis Bay]
Length = 227
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 11/139 (7%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKS-TFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
E+ + V VL+QNT+ AN KA A+L++ T +L + + AIR G K
Sbjct: 27 ETSFEVAVGAVLTQNTSWANVEKAMATLRAHDLLTPAAMLDISEAALAEAIRPAGYYRIK 86
Query: 139 AACIKNILKCLLESKGKL----------CLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
A + N+L+ L + L L+G + E++ L RGIGP+T +L
Sbjct: 87 AGRLANLLRFLRAEAEEFGHGEADLHDPALPMLQGRNARELRERLLTVRGIGPETADSIL 146
Query: 189 MFHLQQDDFPVDTHVFEIS 207
++ L F VD + I+
Sbjct: 147 LYALGLPIFVVDAYTARIA 165
>gi|384190110|ref|YP_005575858.1| Endonuclease III [Bifidobacterium animalis subsp. lactis BB-12]
gi|384192901|ref|YP_005578648.1| DNA-(apurinic or apyrimidinic site) lyase [Bifidobacterium animalis
subsp. lactis CNCM I-2494]
gi|289177602|gb|ADC84848.1| Endonuclease III [Bifidobacterium animalis subsp. lactis BB-12]
gi|340365638|gb|AEK30929.1| DNA-(apurinic or apyrimidinic site) lyase [Bifidobacterium animalis
subsp. lactis CNCM I-2494]
Length = 288
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 81/200 (40%), Gaps = 24/200 (12%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LS TT+ L T+PT + A + +E+ IR G KA I +
Sbjct: 81 LVATILSAQTTDKRVNSITPELFGTYPTAAALADARLEDVESIIRPLGFYHVKAEHIIAV 140
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ ++E G I + EL+ G+G KT VL + FPVDTHV
Sbjct: 141 ARQIVERFGG---------QIPQTMEELTSLPGVGRKTANVVLGNAFRVPGFPVDTHVIR 191
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRI----PKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
++ + W + T + Q I P+ DL+ L G+ +C +
Sbjct: 192 VTGRLHWRDDWMKTSTTPERIEQEITGCFPESEWTDLSHRLIIFGRNICTS--------- 242
Query: 261 RKESAGNLCPLLNYCEKSNK 280
R N CPLL C + +
Sbjct: 243 RSPECEN-CPLLPTCPSAGE 261
>gi|293331251|ref|NP_001168988.1| uncharacterized protein LOC100382817 [Zea mays]
gi|223974285|gb|ACN31330.1| unknown [Zea mays]
Length = 650
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 97/247 (39%), Gaps = 37/247 (14%)
Query: 59 NMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEAN--SLKAFASLKSTFPT--- 113
N+ +DK P+ DE +L L + V + N E + K + KS T
Sbjct: 94 NLVKDKYGNPV----CDENNLRKILASLRQPVTASNWKELQEEAYKKGYNNKSQTETSDV 149
Query: 114 --WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESK-GKLCLEYLRGLSIDEIK 170
WE VL A + I G A I L + +++ G L++LR +S ++ K
Sbjct: 150 VDWESVLNAPFSEVAKCIAIRGQHNILAVRILAFLDHVKKAQDGSFDLDWLRFVSREKAK 209
Query: 171 AELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWV----------------P 214
L GIG K+ C+ + L+ FPVD +V I +GWV P
Sbjct: 210 KFLLSIHGIGVKSADCICLLSLRHRAFPVDVNVARIVTRLGWVKLQPLNGADFHLIDLYP 269
Query: 215 TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNY 274
D + I KE ++ +CL+ T GK+ C KK N CP
Sbjct: 270 ILDDVQRYLWPRLCTIDKEKLYEPHCLMITFGKVV--CRKKNPN-------CGACPFSAS 320
Query: 275 CEKSNKT 281
C+ N +
Sbjct: 321 CKYYNSS 327
>gi|91788609|ref|YP_549561.1| DNA-(apurinic or apyrimidinic site) lyase [Polaromonas sp. JS666]
gi|91697834|gb|ABE44663.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Polaromonas sp. JS666]
Length = 212
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 80/201 (39%), Gaps = 27/201 (13%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
R N P+ +Y SV + L +LS T+ KA L + PT + +L
Sbjct: 14 RAANPQPVTELKYT-----SVFELLAAVLLSAQATDVGVNKATRKLFAVAPTPQAILDLG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
+ +EN I+ GL TKA + + L+E G + + L G+G
Sbjct: 69 LEGLENYIKTIGLYRTKAKNLLATCRILVEQHGG---------QVPRTREALEALPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH--LNQRIPKELKFDLN 239
KT VL + VDTH+F +S G P +N + L +R+P+ D +
Sbjct: 120 KTANVVLNSAFGEATMAVDTHIFRVSNRTGLAP---GKNPLEVEKGLLKRVPEAYLVDAH 176
Query: 240 CLLYTHGK--------LCRNC 252
L HG+ LC C
Sbjct: 177 HWLILHGRYVCTARKPLCWQC 197
>gi|85375166|ref|YP_459228.1| endonuclease III [Erythrobacter litoralis HTCC2594]
gi|84788249|gb|ABC64431.1| endonuclease III [Erythrobacter litoralis HTCC2594]
Length = 224
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 19/189 (10%)
Query: 87 VKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146
+ +LS + ++N+ KA +L + + E +LA + + I AI+ GL K I+
Sbjct: 42 ISCMLSAQSLDSNTAKAARALFALATSPEEMLALDDEAIAQAIKPCGLYNMKTRNIRKFN 101
Query: 147 KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEI 206
+ LL RG+ D + LS GIG K V+ F +D VDTHV +
Sbjct: 102 QALLAEH--------RGVVPDTREGLLS-LPGIGRKCADIVMSFTFGKDVIAVDTHVHRV 152
Query: 207 SKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAG 266
IG + A +KT L +R P+ D + L GK R C + +R
Sbjct: 153 CNRIG-LTDAKTADKTAEQLEERAPRWAHADGHFWLIQFGK--RVCTSRAPKCER----- 204
Query: 267 NLCPLLNYC 275
CP+ + C
Sbjct: 205 --CPVSDLC 211
>gi|15963921|ref|NP_384274.1| endonuclease III protein [Sinorhizobium meliloti 1021]
gi|334318195|ref|YP_004550814.1| endonuclease III [Sinorhizobium meliloti AK83]
gi|384531322|ref|YP_005715410.1| endonuclease III [Sinorhizobium meliloti BL225C]
gi|407722507|ref|YP_006842169.1| endonuclease III [Sinorhizobium meliloti Rm41]
gi|433611957|ref|YP_007188755.1| endonuclease III [Sinorhizobium meliloti GR4]
gi|15073096|emb|CAC41555.1| Probable endonuclease III [Sinorhizobium meliloti 1021]
gi|333813498|gb|AEG06167.1| endonuclease III [Sinorhizobium meliloti BL225C]
gi|334097189|gb|AEG55200.1| endonuclease III [Sinorhizobium meliloti AK83]
gi|407320739|emb|CCM69343.1| Endonuclease III [Sinorhizobium meliloti Rm41]
gi|429550147|gb|AGA05156.1| endonuclease III [Sinorhizobium meliloti GR4]
Length = 263
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 76 EGEEESV--LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
+GE E V +V LS T+A KA L + T E +LA ++ + + I+ G
Sbjct: 53 KGELEHVNPFTLVVAVALSAQATDAGVNKATRQLFAVADTPEKMLALGEERVRDYIKTIG 112
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L KA KN++ KL ++ G + + EL G+G KT VL
Sbjct: 113 LYRNKA---KNVIAL----SEKLIADF--GGEVPRTREELVTLPGVGRKTANVVLSMAFG 163
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
Q VDTH+F I+ I P ++ HL + IP+ F + L HG+
Sbjct: 164 QPTMAVDTHIFRIANRIRLAPGKTP-DEVEAHLLRVIPEHYLFHAHHWLILHGR 216
>gi|225850162|ref|YP_002730396.1| endonuclease III (DNA-(apurinic orapyrimidinic site) lyase)
[Persephonella marina EX-H1]
gi|225646537|gb|ACO04723.1| probable endonuclease III (DNA-(apurinic orapyrimidinic site)
lyase) [Persephonella marina EX-H1]
Length = 219
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 21/193 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T++S T + + + L +L ++ I AI G KA IK I
Sbjct: 40 LISTIISLRTKDQVTAEVSERLFRLADNPYDMLKIPEEKIAEAIYPAGFYRNKAKVIKEI 99
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
GK+ ++ G + + EL + +G+G KT V+ + VDTHV
Sbjct: 100 -------SGKIVKDF--GGKVPDSIDELLKLKGVGRKTANLVVALGYGKPAICVDTHVHR 150
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
IS +G+V T +T + L +++P+E ++N L G+ +C+ K
Sbjct: 151 ISNRLGFVKTKTA-EETEMALRKKVPREYWNEINDLFVAFGQTICKPVSPKCSE------ 203
Query: 265 AGNLCPLLNYCEK 277
CP+ +YCEK
Sbjct: 204 ----CPVSSYCEK 212
>gi|254472102|ref|ZP_05085502.1| endonuclease III [Pseudovibrio sp. JE062]
gi|211958385|gb|EEA93585.1| endonuclease III [Pseudovibrio sp. JE062]
Length = 239
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA L T E ++A + I IR GL KA +
Sbjct: 58 LVAVVLSAQATDAGVNKATKHLFQIADTPEKMVALGEDKIREEIRTIGLYKNKAKNTFLL 117
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + EL G+G KT VL Q VDTH+F
Sbjct: 118 SQMLIEQHGG---------QVPQTREELEALPGVGRKTANVVLNIAFGQPTIAVDTHLFR 168
Query: 206 ISKAIGWVP--TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
I+ +G P T D K L + IP++ + L HG+ +C+
Sbjct: 169 IANRLGLAPGKTPLDVEKK---LEKVIPQDFMQHAHHWLILHGRYICK 213
>gi|359783795|ref|ZP_09287004.1| endonuclease III [Pseudomonas psychrotolerans L19]
gi|359368255|gb|EHK68837.1| endonuclease III [Pseudomonas psychrotolerans L19]
Length = 212
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 21/202 (10%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T + +L + + I+ GL +KA
Sbjct: 28 SPFELLIAVILSAQATDVSVNKATARLYPVANTPQAILDLGVEGLSEYIKTIGLYNSKAR 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + LLE G + + + EL G+G KT VL +Q VD
Sbjct: 88 NVIETCRLLLERHGG---------EVPQTREELEALPGVGRKTANVVLNTAFRQLAMAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNR 259
TH+F +S P + + L L + +P++ D + L HG+ +C +
Sbjct: 139 THIFRVSNRTNLAP-GKNVVEVELRLLKVVPRDFLLDAHHWLILHGRYVC---------Q 188
Query: 260 QRKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE KT
Sbjct: 189 ARKPRCGS-CRIEDLCEYKAKT 209
>gi|75674404|ref|YP_316825.1| endonuclease III/Nth [Nitrobacter winogradskyi Nb-255]
gi|74419274|gb|ABA03473.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrobacter winogradskyi
Nb-255]
Length = 252
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 91/223 (40%), Gaps = 16/223 (7%)
Query: 28 AEECRGIRDELLALHG---FPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLD 84
AE G+R + G PP + + TR + + P E E +
Sbjct: 13 AEPVSGVRRAVKPARGPAELPPSLRPWTPAEVHEAFTRFRRANPEPKGEL---EHLNPFT 69
Query: 85 GLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144
LV VLS T+A KA +L + T +LA ++ + + I+ GL TKA +N
Sbjct: 70 LLVAVVLSAQATDAGVNKATRALFAVADTPARMLALGEEKVRDYIKTIGLYRTKA---RN 126
Query: 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
I+ L E KL E+ ++ +A + G G KT VL + VDTHVF
Sbjct: 127 II-ALSE---KLLAEF--DGAVPPSRAGIESLPGAGRKTANVVLNMAFGERTMAVDTHVF 180
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
++ G P + L L + IP + + L HG+
Sbjct: 181 RVANRTGMAPGKTPL-EVELGLERVIPNQFMLHAHHWLILHGR 222
>gi|15602246|ref|NP_245318.1| hypothetical protein PM0381 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|378774098|ref|YP_005176341.1| endonuclease III [Pasteurella multocida 36950]
gi|383310016|ref|YP_005362826.1| endonuclease III [Pasteurella multocida subsp. multocida str. HN06]
gi|386834504|ref|YP_006239820.1| endonuclease III [Pasteurella multocida subsp. multocida str. 3480]
gi|417852985|ref|ZP_12498429.1| endonuclease III [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|417855401|ref|ZP_12500531.1| endonuclease III [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|425065156|ref|ZP_18468276.1| Endonuclease III [Pasteurella multocida subsp. gallicida P1059]
gi|12720628|gb|AAK02465.1| Nth [Pasteurella multocida subsp. multocida str. Pm70]
gi|338215774|gb|EGP02006.1| endonuclease III [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338216185|gb|EGP02347.1| endonuclease III [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|356596646|gb|AET15372.1| endonuclease III [Pasteurella multocida 36950]
gi|380871288|gb|AFF23655.1| endonuclease III [Pasteurella multocida subsp. multocida str. HN06]
gi|385201206|gb|AFI46061.1| endonuclease III [Pasteurella multocida subsp. multocida str. 3480]
gi|404384347|gb|EJZ80787.1| Endonuclease III [Pasteurella multocida subsp. gallicida P1059]
Length = 210
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 86/220 (39%), Gaps = 24/220 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD N P Y S + L+ +LS T+ KA L T + +L
Sbjct: 14 RDHNPHPTTELNYS-----SPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
++ I+ GL +KA I + L+E I E ++ L G+G
Sbjct: 69 LDGLKEYIKTIGLYNSKAENIIKTCRDLIEKHNG---------EIPENRSALEALAGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL VDTH+F +S G+ P D K L + +P E K D++
Sbjct: 120 KTANVVLNTAFGHPTIAVDTHIFRVSNRTGFAP-GKDVVKVEEKLLKVVPDEFKVDVHHW 178
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G+ C + + CE KT
Sbjct: 179 LILHGRY--TCI------ARKPRCGS-CLIEDLCEFKEKT 209
>gi|347521618|ref|YP_004779189.1| endonuclease III [Lactococcus garvieae ATCC 49156]
gi|385832997|ref|YP_005870772.1| endonuclease III [Lactococcus garvieae Lg2]
gi|343180186|dbj|BAK58525.1| endonuclease III [Lactococcus garvieae ATCC 49156]
gi|343182150|dbj|BAK60488.1| endonuclease III [Lactococcus garvieae Lg2]
Length = 214
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 18/207 (8%)
Query: 74 YDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
+ E E E+ L+ T+LS T+ KA L + +P E + A+ +E IR G
Sbjct: 22 HGELEWETPFQLLIATILSAQATDKGVNKATPGLFAKYPDPESLAQADIADVEQCIRTIG 81
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L TKA KNI+K ++ +E + K L G+G KT VL
Sbjct: 82 LYKTKA---KNIVKT-----SQMLVENFNS-ELPRDKKLLQTLSGVGRKTANVVLGETYG 132
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCI 253
VDTHV ISK + VP A + L + IP+E + + L G+ +C
Sbjct: 133 IPGIAVDTHVERISKRLDIVPQKASVLEVEEKLMKLIPEERWVESHHHLIFFGRY--HCT 190
Query: 254 KKGGNRQRKESAGNLCPLLNYCEKSNK 280
+ + CP+L YC+ K
Sbjct: 191 ARAPKCEE-------CPVLEYCKFGKK 210
>gi|397669156|ref|YP_006510691.1| endonuclease III [Propionibacterium propionicum F0230a]
gi|395142567|gb|AFN46674.1| endonuclease III [Propionibacterium propionicum F0230a]
Length = 205
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPT 137
+ S + LV VLS TT+A + L + +P EH+ AEQ +E I GL +
Sbjct: 22 DHRSPFELLVAVVLSAQTTDARVNQVTPELFARYPDAEHLAGAEQDDVEEIISSLGLYRS 81
Query: 138 KAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDF 197
KA + + + L+ + L EL + G+G KT VL
Sbjct: 82 KARSLTGLARALVADHDGRVPDSLD---------ELVKLPGVGRKTANVVLGDAFGIPGI 132
Query: 198 PVDTHVFEISKAIGWV 213
DTHV +S +GWV
Sbjct: 133 TPDTHVIRVSNRLGWV 148
>gi|304314901|ref|YP_003850048.1| endonuclease III related protein [Methanothermobacter marburgensis
str. Marburg]
gi|302588360|gb|ADL58735.1| endonuclease III related protein [Methanothermobacter marburgensis
str. Marburg]
Length = 228
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 22/204 (10%)
Query: 79 EESVLDGLVKTVLSQNTT---EANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E + + + +L+QNT+ A +L+ AS+ P E +LAAE +E A+RC G
Sbjct: 44 EREIFEVMAGAILTQNTSWDSAAAALRNLASMNVLEP--EGILAAEDDELEGALRCAGFY 101
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA+ ++ I + + +G + EL RG+G +T +L++ ++
Sbjct: 102 RQKASYLREISEFFISLEGA-----------TPSRKELLGVRGVGYETADSILLYGYRKP 150
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
+F VD + I G + ++ Y + + + L+ D H + R+ K
Sbjct: 151 EFVVDAYTRRILSHTGIIGG----DEGYSVIKEIFEENLEPDFRVFQEYHALIVRHG--K 204
Query: 256 GGNRQRKESAGNLCPLLNYCEKSN 279
R R G+ P Y + +
Sbjct: 205 LYYRGRVHGEGDPLPQRLYGDSGD 228
>gi|374328674|ref|YP_005078858.1| Endonuclease III [Pseudovibrio sp. FO-BEG1]
gi|359341462|gb|AEV34836.1| Endonuclease III [Pseudovibrio sp. FO-BEG1]
Length = 239
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA L T E ++A + I IR GL KA +
Sbjct: 58 LVAVVLSAQATDAGVNKATKHLFQIADTPEKMVALGEDKIREEIRTIGLYKNKAKNTFLL 117
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + EL G+G KT VL Q VDTH+F
Sbjct: 118 SQMLIEQHGG---------QVPQTREELEALPGVGRKTANVVLNIAFGQPTIAVDTHLFR 168
Query: 206 ISKAIGWVP--TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
I+ +G P T D K L + IP++ + L HG+ +C+
Sbjct: 169 IANRLGLAPGKTPLDVEKK---LEKVIPQDFMQHAHHWLILHGRYICK 213
>gi|229495325|ref|ZP_04389060.1| endonuclease III [Porphyromonas endodontalis ATCC 35406]
gi|229317768|gb|EEN83666.1| endonuclease III [Porphyromonas endodontalis ATCC 35406]
Length = 217
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 15/196 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS T+ +L + PT E + A Q+ I I+ +KA + +
Sbjct: 34 LVAVMLSAQCTDKRVNIVTPALFAALPTVEAMAQASQEEILALIKSISYPNSKAEHLSKM 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ ++++ G SI + EL G+G KT +L Q VDTHVF
Sbjct: 94 AQRVVQTFGG---------SIPATREELMTLPGVGRKTANVILAVLYNQPTMAVDTHVFR 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S+ IG A T L L + IP EL + L HG+ C+ R K S+
Sbjct: 145 VSERIGLTTRAKTPLDTELTLVRYIPPELIPKAHHWLILHGRYV--CLA----RSPKCSS 198
Query: 266 GNLCPLLNYCEKSNKT 281
+ Y +K+N T
Sbjct: 199 CGITSWCRYAQKNNLT 214
>gi|333911156|ref|YP_004484889.1| HhH-GPD family protein [Methanotorris igneus Kol 5]
gi|333751745|gb|AEF96824.1| HhH-GPD family protein [Methanotorris igneus Kol 5]
Length = 220
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 16/204 (7%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEH-VLAAEQKCIENAIRCGGLAPTK 138
E+ + ++ VL+QNT+ N KA +LK E +L + + ++ I+ G K
Sbjct: 23 ETRYEVVIGAVLTQNTSWKNVEKAIENLKKENLIDERKILEIDTEKLKKLIKPAGFYNIK 82
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSI--DEIKAELSRFRGIGPKTVACVLMFHLQQDD 196
A +KNI ++++ G E L L I ++++ EL +GIG +T +L++ L +
Sbjct: 83 AERLKNITHHIVKNYG--STENLAKLPIKLEDLRKELLNVKGIGKETADSILLYALDRPI 140
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTHGKLCRNCIK 254
F VD + I +G + + ++ + +PK+LK + + L+ GK C
Sbjct: 141 FVVDAYTKRIFSRLGVIEGGEEYDEIRHIFEENLPKDLKIYKEYHALIVELGK--HYC-- 196
Query: 255 KGGNRQRKESAGNLCPLLNYCEKS 278
+++ A CPL + C+ S
Sbjct: 197 -----KKRNPACEKCPLSDLCDYS 215
>gi|319794008|ref|YP_004155648.1| endonuclease III [Variovorax paradoxus EPS]
gi|315596471|gb|ADU37537.1| endonuclease III [Variovorax paradoxus EPS]
Length = 215
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 85/210 (40%), Gaps = 27/210 (12%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E ++ + L +LS T+ KA L T + +L + +E+ I+ GL
Sbjct: 23 ELEYDTPFELLAAVLLSAQATDVGVNKATRKLYPVANTPQAILDLGVEGLESYIKTIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
+KA + + L+E L G + +AEL G+G KT VL +
Sbjct: 83 RSKAKHLIEACRMLVE---------LHGGEVPRTRAELEALPGVGRKTANVVLNVAFGEP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLH----LNQRIPKELKFDLNCLLYTHGKLCRN 251
VDTH+F +S G R KT L L +R+P E + + L HG+
Sbjct: 134 TMAVDTHIFRVSNRTGLA-----RGKTPLEVELKLEKRVPPEYRLHAHHWLILHGRYI-- 186
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ RK C + YC+ KT
Sbjct: 187 CV------ARKPRCWE-CAVAPYCDYKPKT 209
>gi|227111418|ref|ZP_03825074.1| endonuclease III [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
gi|403058515|ref|YP_006646732.1| endonuclease III [Pectobacterium carotovorum subsp. carotovorum
PCC21]
gi|402805841|gb|AFR03479.1| endonuclease III [Pectobacterium carotovorum subsp. carotovorum
PCC21]
Length = 211
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T E +L +++ I+ GL +KA +N+
Sbjct: 33 LIAVLLSAQATDVSVNKATAKLYPVANTPEALLELGVDGVKDYIKTIGLFNSKA---ENV 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K +L LE +G + E +A L G+G KT VL VDTH+F
Sbjct: 90 IKTC-----RLLLEKHQG-QVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S G+ P + + L + +P E K D + L HG+ CI RK
Sbjct: 144 VSNRTGFAP-GKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE K
Sbjct: 195 GS-CLIEDLCEFGEKV 209
>gi|404494924|ref|YP_006719030.1| endonuclease III-like protein [Geobacter metallireducens GS-15]
gi|418067578|ref|ZP_12704917.1| HhH-GPD family protein [Geobacter metallireducens RCH3]
gi|78192552|gb|ABB30319.1| endonuclease III-related protein [Geobacter metallireducens GS-15]
gi|373558576|gb|EHP84912.1| HhH-GPD family protein [Geobacter metallireducens RCH3]
Length = 223
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 6/172 (3%)
Query: 87 VKTVLSQNTTEANSLKAFASLK-STFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
V +L+QNT N KA ++LK + + E + + AIR G K+ +K+
Sbjct: 33 VGAILTQNTNWGNVEKAISNLKRESLLSPEALRDVPAASLAEAIRPAGYFNVKSLRLKDF 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L E G LE + ++ EL RGIGP+T +L++ + F VD +
Sbjct: 93 AGYLWERHGG-SLERMFAGDWHALREELLGVRGIGPETADSILLYAGGKPTFVVDAYTKR 151
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTHGKLCRNCIKK 255
+ A+G + +A ++ +P +++ + + L+ HGK R+C K+
Sbjct: 152 LFAALGILNGSAGYDEVRDLFMANLPPDVRLFNEYHALIVEHGK--RHCRKR 201
>gi|406941768|gb|EKD74171.1| hypothetical protein ACD_45C00052G0002 [uncultured bacterium]
Length = 210
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A+L T + +LA + ++N I+ GL TKA KNI
Sbjct: 33 LIAVLLSAQATDVSVNKATATLFKVANTPQKMLALGETQLKNYIKTIGLFNTKA---KNI 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L + ++ ++ G I + L G+G KT +L + + VDTH+F
Sbjct: 90 L-----TTCQMLIDQYHG-KIPHTRETLETLPGVGRKTANVILNTYFGKPTIAVDTHIFR 143
Query: 206 ISKAIGW----VPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+++ IG P A ++ L IP E D + L HG+
Sbjct: 144 VAQRIGLAKGKTPLAIEK-----QLTASIPTEFLHDAHHWLILHGR 184
>gi|333396087|ref|ZP_08477904.1| endonuclease III [Lactobacillus coryniformis subsp. coryniformis
KCTC 3167]
Length = 216
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 26/199 (13%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
++ +LS T+ + K L FP + + AA + ++ I GL KA +K
Sbjct: 34 MISVMLSAQATDISVNKVTPKLFRDFPDPQAMAAASETALQADIHSIGLYRNKAKHMKAA 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LL+ G+ + +AEL + G+G KT VL F VDTHV
Sbjct: 94 SQALLDD--------FNGV-VPSTRAELMQLPGVGRKTADVVLADAFGIPAFAVDTHVTR 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC----RNCIKKGGNRQR 261
++K + VP A T L + QR+ K L DL + H ++ +C+ + ++
Sbjct: 145 VTKRLRMVPQKA----TVLEIEQRMMKLLPEDL--WVTAHHRMIYFGRYHCLARAPKCEQ 198
Query: 262 KESAGNLCPLLNYCEKSNK 280
CPLL+ C +
Sbjct: 199 -------CPLLSMCADGQR 210
>gi|71906794|ref|YP_284381.1| DNA-(apurinic or apyrimidinic site) lyase [Dechloromonas aromatica
RCB]
gi|71846415|gb|AAZ45911.1| DNA-(apurinic or apyrimidinic site) lyase [Dechloromonas aromatica
RCB]
Length = 210
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 76/194 (39%), Gaps = 24/194 (12%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD N P Y + L+ +LS T+ KA L PT E +LA
Sbjct: 14 RDANPAPTTELHY-----ATPFQLLIAVILSAQATDVGVNKATLRLFPVAPTPEAMLALG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
++ + I+ GL TKA + + L+E G + + + L G+G
Sbjct: 69 EEGLTEYIKTIGLFRTKAKNVMATCRMLVEQHGG---------EVPDDREALEALPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRI----PKELKFD 237
KT VL VDTH+F + G P KT + Q++ P E K D
Sbjct: 120 KTANVVLNTAFGHPTIAVDTHIFRLGNRTGLAP-----GKTVQEVEQKLLRVTPDEFKKD 174
Query: 238 LNCLLYTHGK-LCR 250
+ L HG+ +C+
Sbjct: 175 AHHWLILHGRYICK 188
>gi|374586616|ref|ZP_09659708.1| DNA-3-methyladenine glycosylase III [Leptonema illini DSM 21528]
gi|373875477|gb|EHQ07471.1| DNA-3-methyladenine glycosylase III [Leptonema illini DSM 21528]
Length = 238
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKS-TFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
ES + +V +L+QNT+ N KA SL++ T E +L Q+ + IR G K
Sbjct: 24 ESPFEVIVGAILTQNTSWKNVEKALTSLRAATELQAEQILRLSQEDLAQLIRSSGYFNQK 83
Query: 139 AACIKNILKCLLESKGKLCLEYLRG-LSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDF 197
AA ++ L+ + ++ LR S +E++ +L +GIGP+T +L + L F
Sbjct: 84 AARLQGFLRWF--ERFDFSVDTLRASASSEELRRQLLEQKGIGPETADSILCYALNLPFF 141
Query: 198 PVDTHVFEISKAI 210
VD + F +++ +
Sbjct: 142 VVDAYSFRLAERL 154
>gi|167752258|ref|ZP_02424385.1| hypothetical protein ALIPUT_00501 [Alistipes putredinis DSM 17216]
gi|167660499|gb|EDS04629.1| endonuclease III [Alistipes putredinis DSM 17216]
Length = 218
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS T+ +L FPT + + AA + I I+ KA + +
Sbjct: 34 LVAVILSAQCTDKRVNMTTPALFEAFPTPQAMAAATPEQIYPYIKSISYPNNKAKNLAGM 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L E G G ++K EL R G+G KT V Q++ PVDTHVF
Sbjct: 94 ARMLCEEFG--------GEVPSDLK-ELQRLPGVGRKTANVVGAVIWQKEVMPVDTHVFR 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+S IG + +T L L + IP L + L HG+
Sbjct: 145 VSNRIGLTNRSKTPLQTELTLEKYIPSHLLPTAHHWLILHGR 186
>gi|384538044|ref|YP_005722129.1| endonuclease III protein [Sinorhizobium meliloti SM11]
gi|336034935|gb|AEH80867.1| endonuclease III protein [Sinorhizobium meliloti SM11]
Length = 280
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 76 EGEEESV--LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
+GE E V +V LS T+A KA L + T E +LA ++ + + I+ G
Sbjct: 70 KGELEHVNPFTLVVAVALSAQATDAGVNKATRQLFAVADTPEKMLALGEERVRDYIKTIG 129
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L KA KN++ KL ++ G + + EL G+G KT VL
Sbjct: 130 LYRNKA---KNVIAL----SEKLIADF--GGEVPRTREELVTLPGVGRKTANVVLSMAFG 180
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
Q VDTH+F I+ I P ++ HL + IP+ F + L HG+
Sbjct: 181 QPTMAVDTHIFRIANRIRLAPGKTP-DEVEAHLLRVIPEHYLFHAHHWLILHGR 233
>gi|398848557|ref|ZP_10605368.1| endonuclease III [Pseudomonas sp. GM84]
gi|398248014|gb|EJN33443.1| endonuclease III [Pseudomonas sp. GM84]
Length = 212
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS +T+ KA A L T + + A + + I+ GL +KA +
Sbjct: 33 LVAVTLSAQSTDVGVNKATARLFPVANTPQAIYALGVEGLSEYIKTIGLYNSKAKNVIEA 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + L G+G KT VL +Q VDTH+F
Sbjct: 93 CRLLIERHGG---------EVPQTREALEALPGVGRKTANVVLNTAFRQPAMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P KT L + ++ +PK+ D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKTVLEVEKKLLKFVPKDYLLDAHHWLILHGRYVC---------QA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE KT
Sbjct: 190 RKPRCGS-CRIEDLCEYKQKT 209
>gi|403223295|dbj|BAM41426.1| endonuclease III [Theileria orientalis strain Shintoku]
Length = 426
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 27/223 (12%)
Query: 32 RGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYD-----EGEEESVLDGL 86
R + DE+ ++ P F K N R+K P+D +Y E ++ L
Sbjct: 192 RIVEDEVCSI----PNFTKVWNGIANK---RNKELAPVD--QYGSHCLAEQGKDFEFQTL 242
Query: 87 VKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146
V +LS T + + LK T E++L E +++ I G TK+ IK +
Sbjct: 243 VACMLSSQTKDEVTASCMEKLKKRGLTLENMLKMEVSELDSLISKVGFHATKSKNIKKVA 302
Query: 147 KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACV--LMFHLQQDDFPVDTHVF 204
+ L E G + K +L GIGPK + + F++ D VD HV
Sbjct: 303 EILKEKYGG---------KVPSNKKDLESLPGIGPKMANLIQQIAFNIV-DGIAVDLHVH 352
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I+ +GWV T +T + L + +PK L ++N LL G+
Sbjct: 353 RITNRLGWVKTKTPE-ETRVKLEELLPKSLWSEVNPLLVGFGQ 394
>gi|298290334|ref|YP_003692273.1| endonuclease III [Starkeya novella DSM 506]
gi|296926845|gb|ADH87654.1| endonuclease III [Starkeya novella DSM 506]
Length = 283
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 14/188 (7%)
Query: 70 DMNEYDEGE--EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIEN 127
+ N + EGE LV VLS T+A KA +L PT ++A ++ +
Sbjct: 87 EANPHPEGELNYHDPFTLLVAVVLSAQATDAGVNKATKTLFEEAPTPARMVALGEEGVAR 146
Query: 128 AIRCGGLAPTKAACIKNILKCLL-ESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVAC 186
IR GL KA + + + L+ E GK+ + +A L G+G KT
Sbjct: 147 HIRTLGLYRGKAKNVVELSRLLIAEHDGKVPPD----------RAALEALPGVGRKTANV 196
Query: 187 VLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG 246
VL VDTH+F ++ G P + L L + IP K + L HG
Sbjct: 197 VLNIAFHMPTIAVDTHLFRVANRTGLAPGKTPL-EVELGLERVIPDRFKLHAHHWLILHG 255
Query: 247 KLCRNCIK 254
+ +K
Sbjct: 256 RYICKALK 263
>gi|115314726|ref|YP_763449.1| DNA-(apurinic or apyrimidinic site) lyase [Francisella tularensis
subsp. holarctica OSU18]
gi|115129625|gb|ABI82812.1| DNA-(apurinic or apyrimidinic site) lyase [Francisella tularensis
subsp. holarctica OSU18]
Length = 218
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E S + L+ +LS T+ KA L T E + A ++ + I+ GL
Sbjct: 23 ELEYTSNFELLIAVILSAQATDVGVNKATKVLFKVANTPEQIYALGEQKLAEYIKSIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA + K L+E G + + +L G+G KT VL +
Sbjct: 83 KTKAKNVIATCKDLIEKFGSIVPDNFD---------DLISLAGVGRKTANVVLNTAFSKP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLH--LNQRIPKELKFDLNCLLYTHGKL----- 248
VDTH+F ++ I P A +N + L + IPKE D + + HG+
Sbjct: 134 TMAVDTHIFRLANRI---PLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICTAQ 190
Query: 249 ---CRNCI 253
CRNCI
Sbjct: 191 RPRCRNCI 198
>gi|386874791|ref|ZP_10117017.1| putative endonuclease III [Candidatus Nitrosopumilus salaria BD31]
gi|386807414|gb|EIJ66807.1| putative endonuclease III [Candidatus Nitrosopumilus salaria BD31]
Length = 218
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T + + KA L + + + +A+ K +E I+ G K+ I +
Sbjct: 39 LIGTILSARTKDEATTKAVKELFLKYKNPKELASAKVKDVEKIIKSIGFFHVKSKRIIEV 98
Query: 146 LKCL-LESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
K + + KGK+ D++ L G+G KT CVL++ ++ PVD HV
Sbjct: 99 AKIIHTKYKGKVP---------DDLPT-LIELPGVGRKTANCVLVYAFEKPAIPVDIHVH 148
Query: 205 EISKAIGWVPTAADRN--KTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
IS +G V T RN +T L ++I K+ D+N +G+ +C+
Sbjct: 149 RISNRLGLVDT---RNPEETEQELMKKIQKKYWIDINDTFVMYGQNICK 194
>gi|374308995|ref|YP_005055425.1| iron-sulfur cluster loop [Granulicella mallensis MP5ACTX8]
gi|358751005|gb|AEU34395.1| iron-sulfur cluster loop [Granulicella mallensis MP5ACTX8]
Length = 261
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 89/208 (42%), Gaps = 21/208 (10%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPT----WEHVLAAEQKCIENAIRCGGLAPTK 138
L + ++L+ T ++ + L+ F WE V A IE AI K
Sbjct: 51 LTQFIYSLLAGRTKTPSAHQVMRDLERYFQAGPGNWESVRDATVAEIERAIAVVTFPEVK 110
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH-LQQDDF 197
A +K L + E G L L++L D+I++ L +F G+GP+ A V+ F L++
Sbjct: 111 APRLKAALMGITERYGSLTLDFLARYRTDKIRSWLEQFEGVGPQVSAAVVNFSTLRRRAI 170
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPK----ELKFDLNCLLYTHGK-LCRNC 252
+D + + + + VP AD T L + +P+ E+ + + L+ HG+ LC
Sbjct: 171 SIDANHLRVVQRLCVVPR-ADAAITEERLMRLVPETWDAEMLDEHHSLVKLHGQTLC--- 226
Query: 253 IKKGGNRQRKESAGNLCPLLNYCEKSNK 280
E CPLL+ C +
Sbjct: 227 -------TFSEPRCEACPLLDICPTGKR 247
>gi|440230764|ref|YP_007344557.1| endonuclease III [Serratia marcescens FGI94]
gi|440052469|gb|AGB82372.1| endonuclease III [Serratia marcescens FGI94]
Length = 213
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T +LA ++ I+ GL +KA +
Sbjct: 33 LIAVLLSAQATDVSVNKATAKLYPVANTPAAMLALAVDGVKEYIKTIGLFNSKAENVIKT 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G + E +A L G+G KT VL VDTH+F
Sbjct: 93 CRILLEQHGG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S G+ P + ++ L + +P K D + L HG+ CI RK
Sbjct: 144 VSNRTGFAP-GKNVDQVEEKLLKVVPPAFKVDCHHWLILHGRY--TCI------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE K
Sbjct: 195 GS-CLIEDLCEYKEKV 209
>gi|393796715|ref|ZP_10380079.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 175
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 11/161 (6%)
Query: 91 LSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLL 150
+S T + + KA L S + + + A+ K +E I+ G K+ I + K ++
Sbjct: 1 MSARTKDETTTKAVKVLFSKYKNAKELANAKTKDVEKIIKSIGFYHVKSKRIIEVAK-II 59
Query: 151 ESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAI 210
SK K G D ++ +L G+G KT CVL++ + PVD HV IS +
Sbjct: 60 NSKYK-------GKVPDNLE-KLVELPGVGRKTANCVLVYAFDKPAIPVDIHVHRISNRL 111
Query: 211 GWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
G V T +T L + IPK+ D+N +G+ +C+
Sbjct: 112 GLVDTKTPE-ETEQELMRIIPKKFWIDINDTFVMYGQNICK 151
>gi|218888239|ref|YP_002437560.1| HhH-GPD family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218759193|gb|ACL10092.1| HhH-GPD family protein [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 223
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 10/199 (5%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLK--STFPTWEHVLAAEQKCIENAIRCGGLAPT 137
E+ L+ V VL+QNT N KA L+ + + +L+ + + IR G
Sbjct: 29 ETPLEICVGAVLTQNTAWTNVEKAICRLRDAGALASGQTLLSLPEAELSELIRPAGFFRL 88
Query: 138 KAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDF 197
KA ++N+L+ L ++ G L G +D+++ L + G+GP+T VL++ + F
Sbjct: 89 KAVRLRNLLRFLDDACG-FDFGVLAGQDLDDLRPRLLKVSGVGPETADSVLLYAVGLPTF 147
Query: 198 PVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGG 257
VD + I G VP + Y L L+ D+ H + R + K
Sbjct: 148 VVDAYTRRILHRHGMVPD----DIPYHELRDVFMDVLEPDVPLYNEYHALIVR--VAKDW 201
Query: 258 NRQRKESAGNLCPLLNYCE 276
R R + CPL ++ +
Sbjct: 202 CRARAPRCAD-CPLCSFLD 219
>gi|86747565|ref|YP_484061.1| endonuclease III [Rhodopseudomonas palustris HaA2]
gi|86570593|gb|ABD05150.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Rhodopseudomonas palustris HaA2]
Length = 254
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA SL + T +LA ++ + I+ GL TKA KN+
Sbjct: 77 LVAVVLSAQATDAGVNKATRSLFAIADTPAKMLALGEERVREHIKTIGLFRTKA---KNV 133
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ KL ++ G + +AEL G G KT VL Q VDTHVF
Sbjct: 134 IAL----SQKLLSDF--GGQVPSTRAELETLPGAGRKTANVVLNMAFGQPTMAVDTHVFR 187
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ G P L L + IP E + L HG+
Sbjct: 188 VGNRTGLAPGDTPL-AVELGLEKAIPPEFMQHAHHWLILHGR 228
>gi|418464405|ref|ZP_13035345.1| endonuclease III [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359757201|gb|EHK91357.1| endonuclease III [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 211
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 79/196 (40%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA L T + +LA ++ I+ GL +KA I
Sbjct: 33 LIAVILSAQATDKGVNKATDKLFPVANTPQAILALGVDGLKGYIKTIGLFNSKAENIIKT 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E + E +A L G+G KT VL VDTH+F
Sbjct: 93 CRDLIEKHNG---------EVPEDRAALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ G+ P D K L + +P E K D++ L HG+ C+ RK
Sbjct: 144 VCNRTGFAP-GKDVVKVEEKLIKVVPAEFKVDVHHWLILHGRY--TCV------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G C + + CE +KT
Sbjct: 195 G-ACIIEDLCEYKDKT 209
>gi|345849058|ref|ZP_08802074.1| endonuclease/N-glycosylase [Streptomyces zinciresistens K42]
gi|345639477|gb|EGX60968.1| endonuclease/N-glycosylase [Streptomyces zinciresistens K42]
Length = 313
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 76/190 (40%), Gaps = 19/190 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV TVLS TT+ + +L + +PT E + AA+ + +E +R G K + +
Sbjct: 94 LVATVLSAQTTDLRVNQTTPALFAAYPTPEDLAAADPEAVEEILRPTGFFRAKTKSVMGL 153
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L E G L +L + G+G KT VL + VDTH
Sbjct: 154 SKALAEEYGGEVPGRLE---------DLVKLPGVGRKTAFVVLGNAFGRPGITVDTHFQR 204
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ + W D +K + PK DL+ + HG+ R C RK +
Sbjct: 205 LVRRWKWT-EQTDPDKIEAEIAGLFPKSDWTDLSHHVVWHGR--RIC------HARKPAC 255
Query: 266 GNLCPLLNYC 275
G CP+ C
Sbjct: 256 GA-CPIAPLC 264
>gi|432331457|ref|YP_007249600.1| endonuclease III [Methanoregula formicicum SMSP]
gi|432138166|gb|AGB03093.1| endonuclease III [Methanoregula formicicum SMSP]
Length = 214
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 27/198 (13%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + +V T+LS TT+ LK +L S +PT + A+ +E I G KA
Sbjct: 31 SPFEVIVLTILSAQTTDKAVLKVKPALFSQYPTPAKLAKAKAGDVETIIHSLGYYHAKAK 90
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
I + L++ G S+ E EL G+G KT VL L +++ V
Sbjct: 91 NIIAASQTLIDQFGG---------SVPETMDELLTIPGVGRKTANIVLYHALGKNEGIAV 141
Query: 200 DTHVFEISKAIGWVPT----AADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-------- 247
DTHV +++ IG+ T +R+ L PK+ DL +L HG+
Sbjct: 142 DTHVRRLAQRIGFSDTDNVEVIERD-----LMAIFPKKDWGDLTDVLIAHGRVTCDAKKP 196
Query: 248 LCRNCIKKGGNRQRKESA 265
LC C+ +G R + S+
Sbjct: 197 LCGECVIRGMCRWNRNSS 214
>gi|85375167|ref|YP_459229.1| endonuclease III family protein [Erythrobacter litoralis HTCC2594]
gi|84788250|gb|ABC64432.1| endonuclease III family protein [Erythrobacter litoralis HTCC2594]
Length = 225
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV V+ T A S + L + +WE V AA + +E ++ A +K+
Sbjct: 30 LVHGVIGAQTKTAASNASTDGLLAECGSWEAVAAAPVEELEVRLQRQTFPSVAAQRLKDC 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHL-QQDDFPVDTHVF 204
L ++ +G + L +L L+I++ L R G+ K A V+ L ++ VD H
Sbjct: 90 LNAIIAERGAVDLRHLSNLAIEDAMEWLERLPGVARKNSAGVMNASLFERKAMVVDGHHR 149
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKE 233
I + +G VP AD +TY L +P+E
Sbjct: 150 RIMQRMGMVPPKADTARTYDALMPIVPEE 178
>gi|89256272|ref|YP_513634.1| endonuclease III [Francisella tularensis subsp. holarctica LVS]
gi|156502338|ref|YP_001428403.1| endonuclease III [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|290953108|ref|ZP_06557729.1| endonuclease III [Francisella tularensis subsp. holarctica URFT1]
gi|422938686|ref|YP_007011833.1| endonuclease III [Francisella tularensis subsp. holarctica FSC200]
gi|423050620|ref|YP_007009054.1| endonuclease III [Francisella tularensis subsp. holarctica F92]
gi|89144103|emb|CAJ79360.1| Endonuclease III [Francisella tularensis subsp. holarctica LVS]
gi|156252941|gb|ABU61447.1| endonuclease III [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|407293837|gb|AFT92743.1| endonuclease III [Francisella tularensis subsp. holarctica FSC200]
gi|421951342|gb|AFX70591.1| endonuclease III [Francisella tularensis subsp. holarctica F92]
Length = 212
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E S + L+ +LS T+ KA L T E + A ++ + I+ GL
Sbjct: 23 ELEYTSNFELLIAVILSAQATDVGVNKATKVLFKVANTPEQIYALGEQKLAEYIKSIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA + K L+E G + + +L G+G KT VL +
Sbjct: 83 KTKAKNVIATCKDLIEKFGSIVPDNFD---------DLISLAGVGRKTANVVLNTAFSKP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLH--LNQRIPKELKFDLNCLLYTHGKL----- 248
VDTH+F ++ I P A +N + L + IPKE D + + HG+
Sbjct: 134 TMAVDTHIFRLANRI---PLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICTAQ 190
Query: 249 ---CRNCI 253
CRNCI
Sbjct: 191 RPRCRNCI 198
>gi|332982475|ref|YP_004463916.1| DNA-(apurinic or apyrimidinic site) lyase [Mahella australiensis
50-1 BON]
gi|332700153|gb|AEE97094.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Mahella australiensis 50-1 BON]
Length = 213
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 81/195 (41%), Gaps = 21/195 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS +T+ K L + T E A E + +E I+ GL TKA I N+
Sbjct: 34 LIATILSAQSTDKQVNKVTGKLFGKYKTPEDFAALEPQTLEEEIKSCGLYRTKALNIINM 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+E G + EL + G+G KT V+ + VDTHVF
Sbjct: 94 SKILVERYGS---------QVPSDPDELQKLPGVGRKTANVVVSNAFGRPAIAVDTHVFR 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKES 264
++ +G ++ T L IP+ L + HG+ +CR RQ K
Sbjct: 145 VTHRLGLAKSSTPLG-TEKELMACIPRVLWSQAHHWFIYHGRNVCR-------ARQPK-- 194
Query: 265 AGNLCPLLNYCEKSN 279
+ C L YC+ N
Sbjct: 195 -CDECRLRQYCDFYN 208
>gi|152987876|ref|YP_001347018.1| endonuclease III [Pseudomonas aeruginosa PA7]
gi|452880555|ref|ZP_21957510.1| endonuclease III [Pseudomonas aeruginosa VRFPA01]
gi|150963034|gb|ABR85059.1| endonuclease III [Pseudomonas aeruginosa PA7]
gi|452183029|gb|EME10047.1| endonuclease III [Pseudomonas aeruginosa VRFPA01]
Length = 212
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 27/200 (13%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + + I+ GL +KA +
Sbjct: 33 LIAVILSAQATDVGVNKATARLYPVANTPEAIYALGVEGLSEYIKTIGLFNSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + +L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILIEKHGS---------QVPDNREDLEALPGVGRKTANVVLNTAFRQPTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGKLCRNCIKKGGNRQR 261
++ G P K L + ++ +P++ D + L HG+ C + R
Sbjct: 144 VANRTGIAP-----GKNVLEVEKKLLKFVPRDYLLDAHHWLILHGRYV--C------KAR 190
Query: 262 KESAGNLCPLLNYCEKSNKT 281
K G+ C + + CE +KT
Sbjct: 191 KPQCGS-CRIEDLCEYRHKT 209
>gi|449016697|dbj|BAM80099.1| similar to endonuclease III [Cyanidioschyzon merolae strain 10D]
Length = 333
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 15/174 (8%)
Query: 38 LLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTE 97
LA P V+ + R++ N+ R VP + ++ + L+ VLS T+
Sbjct: 32 FLAFQPPTPALVR-KAARIRENLERCYPQVPRTLLQHRDP-----FTLLLAVVLSAQCTD 85
Query: 98 ANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC 157
L PT + +L ++ I IR GLAP KA + I + LLE G
Sbjct: 86 LKVNGVTPKLFELAPTPQALLHLGEQRIREIIRPLGLAPRKARALVGIAERLLEEHGG-- 143
Query: 158 LEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIG 211
+ AEL G+G KT + VL + FPVDTH+ +++ G
Sbjct: 144 -------QVPRTFAELEALPGVGHKTASVVLSQAFGEPAFPVDTHIHRLAQRWG 190
>gi|416070527|ref|ZP_11583641.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|347999105|gb|EGY39982.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
Length = 224
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ KA L T + +LA ++ I+ GL +KA
Sbjct: 41 SPFELLIAVILSAQATDKGVNKATDKLFPVANTPQTILALGVDGLKEYIKTIGLFNSKAE 100
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
I + L+E + E +A L G+G KT VL VD
Sbjct: 101 NIIKTCRDLIEKHNG---------DVPEDRAALEALAGVGRKTANVVLNTAFGHPTIAVD 151
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F + G+ P D K L + +P E K D++ L HG+ C+
Sbjct: 152 THIFRVCNRTGFAP-GKDVVKVEEKLIKVVPAEFKVDVHHWLILHGRY--TCV------A 202
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G C + + CE +KT
Sbjct: 203 RKPRCGA-CIIEDLCEYKDKT 222
>gi|116627954|ref|YP_820573.1| endonuclease III, DNA repair [Streptococcus thermophilus LMD-9]
gi|386086829|ref|YP_006002703.1| Endonuclease III, DNA repair [Streptococcus thermophilus ND03]
gi|386344902|ref|YP_006041066.1| endonuclease III, DNA repair [Streptococcus thermophilus JIM 8232]
gi|387909931|ref|YP_006340237.1| endonuclease III, DNA repair [Streptococcus thermophilus
MN-ZLW-002]
gi|116101231|gb|ABJ66377.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Streptococcus thermophilus LMD-9]
gi|312278542|gb|ADQ63199.1| Endonuclease III, DNA repair [Streptococcus thermophilus ND03]
gi|339278363|emb|CCC20111.1| endonuclease III, DNA repair [Streptococcus thermophilus JIM 8232]
gi|387574866|gb|AFJ83572.1| endonuclease III, DNA repair [Streptococcus thermophilus
MN-ZLW-002]
Length = 214
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 18/210 (8%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
+ + E E E+ LV +LS TT+ K L + +P E + +A +E +R
Sbjct: 20 DAHGELEWETPFQLLVAVILSAQTTDKAVNKVTPGLWARYPEIEDLASANLDDVEMCLRT 79
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL KA KNI+K + L G + + EL G+G KT VL
Sbjct: 80 IGLYKNKA---KNIIKT-----ARAILMNFDG-QVPKTHKELESLPGVGRKTANVVLAEV 130
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
VDTHV +SK + P A + L ++IPK+ + + G+ +
Sbjct: 131 YGIPSIAVDTHVSRVSKRLNIAPENASVEEIEAELMKKIPKKDWIISHHRMIFFGRY--H 188
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K Q CPL +YC+ +T
Sbjct: 189 CLAKNPKCQT-------CPLQSYCKYYRET 211
>gi|332530205|ref|ZP_08406152.1| endonuclease III [Hylemonella gracilis ATCC 19624]
gi|332040326|gb|EGI76705.1| endonuclease III [Hylemonella gracilis ATCC 19624]
Length = 212
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 74/190 (38%), Gaps = 23/190 (12%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
R N +P+ EY SV + L +LS T+ KA L T +LA
Sbjct: 14 RAANPLPVTELEYT-----SVFELLAAVLLSAQATDVGVNKATRRLFPVANTPARILALG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
Q +E+ I+ GL +KA + + L++ G + + EL G+G
Sbjct: 69 QDGLESYIKTIGLYRSKAKHLMETCRILVQRHGG---------QVPRTREELEALPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQ----RIPKELKFD 237
KT VL + VDTH+F + G P KT + Q RIP E
Sbjct: 120 KTANVVLNVAFGEPTMAVDTHIFRLGNRTGLAP-----GKTPYEVEQQLLRRIPAEFMEH 174
Query: 238 LNCLLYTHGK 247
+ L HG+
Sbjct: 175 AHHWLILHGR 184
>gi|283456809|ref|YP_003361373.1| endonuclease III [Bifidobacterium dentium Bd1]
gi|283103443|gb|ADB10549.1| endonuclease III [Bifidobacterium dentium Bd1]
Length = 221
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV TVLS TT+ L FP + AA+ + +E+ I G TK KNI
Sbjct: 40 LVATVLSAQTTDKRVNMVTPVLFGRFPGPADLQAADPEQVEDIIHSIGFHRTKT---KNI 96
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
++ LC Y G D ++ EL+ G+G KT VL + FPVDTHV
Sbjct: 97 IRL----SHDLCERY-DGTVPDSME-ELTALPGVGRKTANVVLGNAFDKPGFPVDTHVIR 150
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRI----PKELKFDLNCLLYTHGK 247
++ + W A + + + I P DL+ L HG+
Sbjct: 151 VTGRLHWRSDWASPTPDPVAIEREITACFPPSEWTDLSHRLIMHGR 196
>gi|253751599|ref|YP_003024740.1| endonuclease III [Streptococcus suis SC84]
gi|253753501|ref|YP_003026642.1| endonuclease III [Streptococcus suis P1/7]
gi|253755674|ref|YP_003028814.1| endonuclease III [Streptococcus suis BM407]
gi|403061427|ref|YP_006649643.1| endonuclease III [Streptococcus suis S735]
gi|251815888|emb|CAZ51501.1| putative endonuclease III [Streptococcus suis SC84]
gi|251818138|emb|CAZ55933.1| putative endonuclease III [Streptococcus suis BM407]
gi|251819747|emb|CAR45620.1| putative endonuclease III [Streptococcus suis P1/7]
gi|402808753|gb|AFR00245.1| endonuclease III [Streptococcus suis S735]
Length = 207
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 89 TVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKC 148
+LS TT+A KA L + FPT + + AAE K IE I GL KA +K+ +
Sbjct: 38 VLLSAQTTDAAVNKATPGLFAAFPTPQAMAAAEVKDIEPYISRLGLYRNKAKFLKDCAQQ 97
Query: 149 LLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
L+E + + + + EL G+G KT VL F VDTHV I K
Sbjct: 98 LMERHNGI---------VPQTREELEALAGVGRKTANVVLSVGFGIPAFAVDTHVGRICK 148
Query: 209 AIGWVPTAADRNKTYLHLNQRIPKELKFDLN-CLLYTHGKLC 249
V +A +T + + +P EL + ++Y ++C
Sbjct: 149 HHDIVKKSATPLETEKRVMEVLPPELWLPAHQAMIYFGREVC 190
>gi|238786054|ref|ZP_04630013.1| Endonuclease III [Yersinia bercovieri ATCC 43970]
gi|238713030|gb|EEQ05083.1| Endonuclease III [Yersinia bercovieri ATCC 43970]
Length = 204
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T + +L +++ I+ GL TKA +N+
Sbjct: 24 LISVLLSAQATDVSVNKATAKLYPVANTPQAILDLGVDGLKSYIKTIGLFNTKA---ENV 80
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K ++ LE G + E +A L G+G KT VL VDTH+F
Sbjct: 81 IKTC-----RILLEQHHG-EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 134
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ G+ P ++ ++ L + +P E K D + L HG+ CI RK
Sbjct: 135 VCNRTGFAP-GSNVDQVEAKLLKVVPAEFKLDCHHWLILHGRY--TCI------ARKPRC 185
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE K
Sbjct: 186 GS-CLIEDLCEYKEKV 200
>gi|139473911|ref|YP_001128627.1| endonuclease III [Streptococcus pyogenes str. Manfredo]
gi|134272158|emb|CAM30403.1| putative endonuclease III [Streptococcus pyogenes str. Manfredo]
Length = 218
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 26/210 (12%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E + E+ L+ +LS TT+ K L ++P E + AE +ENA+R GL
Sbjct: 25 ELDWETPFQLLIAVILSAQTTDKAVNKVTPGLWQSYPEIEDLAFAELSDVENALRTIGLY 84
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA KNI+K + + +G + + EL G+G KT VL
Sbjct: 85 KNKA---KNIIKT-----AQAIRDDFKG-QVPKNHKELESLPGVGRKTANVVLAEVYGVP 135
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC----RN 251
VDTHV +SK + AD + L +IPK+ + TH +L +
Sbjct: 136 AIAVDTHVARVSKRLNISSPDADVKQIEADLMAKIPKK------DWIITHHRLIFFGRYH 189
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K+ +CP+ +YC+ T
Sbjct: 190 CLA-------KKPKCEICPVQSYCKYYQDT 212
>gi|297585115|ref|YP_003700895.1| HhH-GPD family protein [Bacillus selenitireducens MLS10]
gi|297143572|gb|ADI00330.1| HhH-GPD family protein [Bacillus selenitireducens MLS10]
Length = 211
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 18/202 (8%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
+S + + +L QNT N KA A L+ E + A + +E IR G KA
Sbjct: 24 DSPFEMMAGAILVQNTNWNNVGKALARLQPDLSP-ERIRAMTDEELEERIRPSGFFRMKA 82
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
++ L+ ES G + L+ + D ++ EL + +GIG +T +L++ L + F +
Sbjct: 83 QRLRAFLEWF-ESHGD-DVRALQQVETDVLREELLQVKGIGAETADSILLYALYRPVFVI 140
Query: 200 DTHVFEISKAIGW-VPTAADRNKTYLHLNQRIPKE--LKFDLNCLLYTHGKLCRNCIKKG 256
D + I IG+ P ++ + + + +PK+ L D + H K +C
Sbjct: 141 DAYTHRIMNRIGYQFPKKYNQAQAF--FEEALPKDEALYNDFHAQFVRHAK--EHC---- 192
Query: 257 GNRQRKESAGNLCPLLNYCEKS 278
+K+ CPL CEK
Sbjct: 193 ----KKKPVCEGCPLEPECEKQ 210
>gi|283782700|ref|YP_003373454.1| endonuclease III [Gardnerella vaginalis 409-05]
gi|298253131|ref|ZP_06976923.1| EndoIII-like endonuclease [Gardnerella vaginalis 5-1]
gi|283442104|gb|ADB14570.1| endonuclease III [Gardnerella vaginalis 409-05]
gi|297532526|gb|EFH71412.1| EndoIII-like endonuclease [Gardnerella vaginalis 5-1]
Length = 224
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 73/172 (42%), Gaps = 22/172 (12%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLS TT+ L S FP + AA +E+ I G KA I ++
Sbjct: 46 LIATVLSAQTTDKRVNIVTPELFSIFPNASSLAAAPVSQVESIIYPLGFYRVKAQNIISL 105
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
CLL + G+ ++A +S G+G KT VL FPVDTHV
Sbjct: 106 SACLLNN--------FSGIVPSNMEALIS-LPGVGRKTANVVLGNAFGLPGFPVDTHVIR 156
Query: 206 ISKAIGWV-------PTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG-KLC 249
++ +GW P A +R T PKE +L+ L HG K+C
Sbjct: 157 VTGRLGWRKVQNRPNPVAIEREITAYFA----PKEWT-NLSHRLILHGRKIC 203
>gi|309801734|ref|ZP_07695854.1| endonuclease III [Bifidobacterium dentium JCVIHMP022]
gi|308221676|gb|EFO77968.1| endonuclease III [Bifidobacterium dentium JCVIHMP022]
Length = 221
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV TVLS TT+ L FP + AA+ + +E+ I G TK KNI
Sbjct: 40 LVATVLSAQTTDKRVNMVTPVLFGRFPGPADLQAADPEQVEDIIHSIGFHRTKT---KNI 96
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
++ LC Y G D ++ EL+ G+G KT VL + FPVDTHV
Sbjct: 97 IRL----SHDLCERY-DGTVPDSME-ELTALPGVGRKTANVVLGNAFDKPGFPVDTHVIR 150
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRI----PKELKFDLNCLLYTHGK 247
++ + W A + + + I P DL+ L HG+
Sbjct: 151 VTGRLHWRSDWASPTPDPVAIEREITACFPPSEWTDLSHRLIMHGR 196
>gi|410657012|ref|YP_006909383.1| Endonuclease III [Dehalobacter sp. DCA]
gi|410660050|ref|YP_006912421.1| Endonuclease III [Dehalobacter sp. CF]
gi|409019367|gb|AFV01398.1| Endonuclease III [Dehalobacter sp. DCA]
gi|409022406|gb|AFV04436.1| Endonuclease III [Dehalobacter sp. CF]
Length = 217
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LS TT+ K A L PT + +L + E I GL TKA KNI
Sbjct: 40 LVATILSAQTTDQKVNKVTAVLFERCPTPKKMLEITPREFEEIIHPIGLFRTKA---KNI 96
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L+ +L +E G + +L + G+G KT VL PVDTHV
Sbjct: 97 LQ-----TCELLIEEHHG-DVPSNLDDLVKMPGVGRKTAGVVLANAYGIPALPVDTHVLR 150
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG-KLC 249
++ +G + D +K L IP EL D + L HG KLC
Sbjct: 151 VANRLG-LSREKDPSKVEKELTALIPMELWIDTHHRLIFHGRKLC 194
>gi|46204880|ref|ZP_00209603.1| COG0177: Predicted EndoIII-related endonuclease [Magnetospirillum
magnetotacticum MS-1]
Length = 247
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+ + A A L + T E +LA ++ + + IR GL TKA + +
Sbjct: 61 LVAVVLSAQATDKSVNLATAPLFALADTPEKMLALGEERVRHFIRTIGLFNTKAKNVIAL 120
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G L + G+G KT + VL VDTH+F
Sbjct: 121 SRILIERHGGEVPREAEALEV---------LPGVGTKTASVVLNVAFGVPRIAVDTHIFR 171
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+S I A +K L R+P+ + + + L HG+
Sbjct: 172 VSNRIPLF-VAPTTDKVQAGLEARVPEPFRLNAHHWLILHGR 212
>gi|410464085|ref|ZP_11317553.1| putative endonuclease III-like protein [Desulfovibrio magneticus
str. Maddingley MBC34]
gi|409982800|gb|EKO39221.1| putative endonuclease III-like protein [Desulfovibrio magneticus
str. Maddingley MBC34]
Length = 216
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVL-AAEQKCIENAIRCGGLAPTKAAC 141
L+ V +L+QNT + KA A L+ + L AA + + IR G KA
Sbjct: 30 LEMAVGAILTQNTNWPGAAKAVAGLREAGLLDPYALHAASLEAVAEPIRPAGHFRVKAGR 89
Query: 142 IKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT 201
+KN++ ++E G L L G + + + +L +G+GP+T +L++ L F VD
Sbjct: 90 LKNLMALIVEDLGG-DLTALAGYDLGQARDKLLAVKGVGPETADSILLYGLNLPAFVVDA 148
Query: 202 HVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF 236
+ I G VP A ++ +P+++
Sbjct: 149 YTARICFRHGLVPEDAGYDELRELFMDALPEDVGL 183
>gi|53718738|ref|YP_107724.1| endonuclease III [Burkholderia pseudomallei K96243]
gi|53725522|ref|YP_103525.1| endonuclease III [Burkholderia mallei ATCC 23344]
gi|67643799|ref|ZP_00442542.1| endonuclease III [Burkholderia mallei GB8 horse 4]
gi|76811187|ref|YP_332746.1| endonuclease III [Burkholderia pseudomallei 1710b]
gi|121598356|ref|YP_992362.1| endonuclease III [Burkholderia mallei SAVP1]
gi|124386556|ref|YP_001026833.1| endonuclease III [Burkholderia mallei NCTC 10229]
gi|126440005|ref|YP_001058224.1| endonuclease III [Burkholderia pseudomallei 668]
gi|126450130|ref|YP_001079880.1| endonuclease III [Burkholderia mallei NCTC 10247]
gi|126451469|ref|YP_001065462.1| endonuclease III [Burkholderia pseudomallei 1106a]
gi|134281309|ref|ZP_01768018.1| endonuclease III [Burkholderia pseudomallei 305]
gi|166999901|ref|ZP_02265730.1| endonuclease III [Burkholderia mallei PRL-20]
gi|167718711|ref|ZP_02401947.1| endonuclease III [Burkholderia pseudomallei DM98]
gi|167737724|ref|ZP_02410498.1| endonuclease III [Burkholderia pseudomallei 14]
gi|167814881|ref|ZP_02446561.1| endonuclease III [Burkholderia pseudomallei 91]
gi|167823328|ref|ZP_02454799.1| endonuclease III [Burkholderia pseudomallei 9]
gi|167844879|ref|ZP_02470387.1| endonuclease III [Burkholderia pseudomallei B7210]
gi|167893413|ref|ZP_02480815.1| endonuclease III [Burkholderia pseudomallei 7894]
gi|167901875|ref|ZP_02489080.1| endonuclease III [Burkholderia pseudomallei NCTC 13177]
gi|167910107|ref|ZP_02497198.1| endonuclease III [Burkholderia pseudomallei 112]
gi|167918136|ref|ZP_02505227.1| endonuclease III [Burkholderia pseudomallei BCC215]
gi|217419458|ref|ZP_03450964.1| endonuclease III [Burkholderia pseudomallei 576]
gi|226194383|ref|ZP_03789981.1| endonuclease III [Burkholderia pseudomallei Pakistan 9]
gi|237811473|ref|YP_002895924.1| endonuclease III [Burkholderia pseudomallei MSHR346]
gi|242318004|ref|ZP_04817020.1| endonuclease III [Burkholderia pseudomallei 1106b]
gi|254175502|ref|ZP_04882162.1| endonuclease III [Burkholderia mallei ATCC 10399]
gi|254190653|ref|ZP_04897160.1| endonuclease III [Burkholderia pseudomallei Pasteur 52237]
gi|254207542|ref|ZP_04913892.1| endonuclease III [Burkholderia mallei JHU]
gi|254257990|ref|ZP_04949044.1| endonuclease III [Burkholderia pseudomallei 1710a]
gi|254298436|ref|ZP_04965888.1| endonuclease III [Burkholderia pseudomallei 406e]
gi|254359955|ref|ZP_04976225.1| endonuclease III [Burkholderia mallei 2002721280]
gi|386862484|ref|YP_006275433.1| endonuclease III [Burkholderia pseudomallei 1026b]
gi|403517894|ref|YP_006652027.1| endonuclease III [Burkholderia pseudomallei BPC006]
gi|418390025|ref|ZP_12967834.1| endonuclease III [Burkholderia pseudomallei 354a]
gi|418538121|ref|ZP_13103749.1| endonuclease III [Burkholderia pseudomallei 1026a]
gi|418545444|ref|ZP_13110699.1| endonuclease III [Burkholderia pseudomallei 1258a]
gi|418547870|ref|ZP_13113003.1| endonuclease III [Burkholderia pseudomallei 1258b]
gi|418554045|ref|ZP_13118844.1| endonuclease III [Burkholderia pseudomallei 354e]
gi|52209152|emb|CAH35096.1| endonuclease III [Burkholderia pseudomallei K96243]
gi|52428945|gb|AAU49538.1| endonuclease III [Burkholderia mallei ATCC 23344]
gi|76580640|gb|ABA50115.1| endonuclease III [Burkholderia pseudomallei 1710b]
gi|121227166|gb|ABM49684.1| endonuclease III [Burkholderia mallei SAVP1]
gi|124294576|gb|ABN03845.1| endonuclease III [Burkholderia mallei NCTC 10229]
gi|126219498|gb|ABN83004.1| endonuclease III [Burkholderia pseudomallei 668]
gi|126225111|gb|ABN88651.1| endonuclease III [Burkholderia pseudomallei 1106a]
gi|126243000|gb|ABO06093.1| endonuclease III [Burkholderia mallei NCTC 10247]
gi|134247615|gb|EBA47700.1| endonuclease III [Burkholderia pseudomallei 305]
gi|147751436|gb|EDK58503.1| endonuclease III [Burkholderia mallei JHU]
gi|148029195|gb|EDK87100.1| endonuclease III [Burkholderia mallei 2002721280]
gi|157808285|gb|EDO85455.1| endonuclease III [Burkholderia pseudomallei 406e]
gi|157938328|gb|EDO93998.1| endonuclease III [Burkholderia pseudomallei Pasteur 52237]
gi|160696546|gb|EDP86516.1| endonuclease III [Burkholderia mallei ATCC 10399]
gi|217396762|gb|EEC36778.1| endonuclease III [Burkholderia pseudomallei 576]
gi|225933468|gb|EEH29457.1| endonuclease III [Burkholderia pseudomallei Pakistan 9]
gi|237502706|gb|ACQ95024.1| endonuclease III [Burkholderia pseudomallei MSHR346]
gi|238525237|gb|EEP88665.1| endonuclease III [Burkholderia mallei GB8 horse 4]
gi|242141243|gb|EES27645.1| endonuclease III [Burkholderia pseudomallei 1106b]
gi|243064026|gb|EES46212.1| endonuclease III [Burkholderia mallei PRL-20]
gi|254216679|gb|EET06063.1| endonuclease III [Burkholderia pseudomallei 1710a]
gi|385345597|gb|EIF52292.1| endonuclease III [Burkholderia pseudomallei 1258a]
gi|385348881|gb|EIF55477.1| endonuclease III [Burkholderia pseudomallei 1026a]
gi|385359409|gb|EIF65372.1| endonuclease III [Burkholderia pseudomallei 1258b]
gi|385370824|gb|EIF76050.1| endonuclease III [Burkholderia pseudomallei 354e]
gi|385375760|gb|EIF80504.1| endonuclease III [Burkholderia pseudomallei 354a]
gi|385659612|gb|AFI67035.1| endonuclease III [Burkholderia pseudomallei 1026b]
gi|403073537|gb|AFR15117.1| endonuclease III [Burkholderia pseudomallei BPC006]
Length = 214
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 16/182 (8%)
Query: 69 LDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENA 128
L+ + E E + + L+ +LS T+ + KA + T + ++A ++ + +
Sbjct: 16 LNPHPTTELEYTTPFELLIAVMLSAQATDVSVNKAMRKMFPVANTPKKIVALGEEGVADY 75
Query: 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAE---LSRFRGIGPKTVA 185
I+ GL TKA + + LLE G E+ AE L G+G KT
Sbjct: 76 IKTIGLYRTKAKNVVAASRILLEQYG------------GEVPAEREALESLPGVGRKTAN 123
Query: 186 CVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTH 245
VL Q VDTH+F ++ G P D L + PKE D + L H
Sbjct: 124 VVLNTAFGQPTIAVDTHIFRVANRTGLAP-GKDVRAVEAALEKLTPKEFLHDAHHWLILH 182
Query: 246 GK 247
G+
Sbjct: 183 GR 184
>gi|302809902|ref|XP_002986643.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
gi|302809904|ref|XP_002986644.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
gi|300145531|gb|EFJ12206.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
gi|300145532|gb|EFJ12207.1| hypothetical protein SELMODRAFT_450920 [Selaginella moellendorffii]
Length = 469
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A +K L + E G + LE++R + + K L RG+G K+V C+ + L FP
Sbjct: 6 AGRMKGFLDRVYEEHGSIDLEWIRDVPPQDAKDFLLSIRGLGLKSVECIRLLALDHLAFP 65
Query: 199 VDTHVFEISKAIGWVP 214
VDT+V I +GWVP
Sbjct: 66 VDTNVGRILVRLGWVP 81
>gi|339500707|ref|YP_004698742.1| DNA-(apurinic or apyrimidinic site) lyase [Spirochaeta caldaria DSM
7334]
gi|338835056|gb|AEJ20234.1| DNA-(apurinic or apyrimidinic site) lyase [Spirochaeta caldaria DSM
7334]
Length = 229
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 81/193 (41%), Gaps = 21/193 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV TV+S T +A +L + L + PT E ++ + I +I G TKA + I
Sbjct: 50 LVSTVISLRTKDAVTLSSSRRLLAKAPTPEALVKLTKDEIAQSIYPAGFYRTKAEHLHTI 109
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L + G D ++ LS G+G KT VL QD VDTHV
Sbjct: 110 --------ADLLIHQYDGKVPDTLEVLLS-LPGVGRKTANLVLSEGFGQDAICVDTHVHR 160
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG-KLCRNCIKKGGNRQRKES 264
I GWV T +T L +P+ +N LL G ++CR +
Sbjct: 161 ICNRTGWVVTKVP-EETEQALRHILPRPYWRRINWLLVQFGQQICRP----------QSP 209
Query: 265 AGNLCPLLNYCEK 277
+ CPL ++C++
Sbjct: 210 LCSQCPLTSFCKR 222
>gi|119897726|ref|YP_932939.1| DNA-(apurinic or apyrimidinic site) lyase [Azoarcus sp. BH72]
gi|119670139|emb|CAL94052.1| DNA-(apurinic or apyrimidinic site) lyase [Azoarcus sp. BH72]
Length = 213
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 10/172 (5%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E ++ LV VLS T+ + A L + PT E +LA ++ + + I+ GL
Sbjct: 26 ELEYQTPYQLLVAVVLSAQATDKSVNLATRKLFAAAPTPEAMLALGEEGVADYIKTIGLF 85
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA + + LLE G + + L G+G KT VL ++
Sbjct: 86 RNKAKNTVALSRLLLERHGG---------EVPRDREALEALPGVGRKTANVVLNTIFREP 136
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
VDTH+F ++ G P D L +R+PK D + L HG+
Sbjct: 137 AMAVDTHIFRLANRTGLAP-GKDVMAVEQSLLKRVPKAFLLDAHHWLILHGR 187
>gi|420144137|ref|ZP_14651625.1| Endonuclease III [Lactococcus garvieae IPLA 31405]
gi|391855589|gb|EIT66138.1| Endonuclease III [Lactococcus garvieae IPLA 31405]
Length = 214
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 18/207 (8%)
Query: 74 YDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
+ E E E+ L+ T+LS T+ KA L + +P E + A+ +E IR G
Sbjct: 22 HGELEWETPFQLLIATILSAQATDKGVNKATPGLFAKYPDPESLAQADIADVEQCIRTIG 81
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L TKA KNI+K ++ +E + K L G+G KT VL
Sbjct: 82 LYKTKA---KNIVKT-----SQMLVENFNS-ELPRDKKLLQTLPGVGRKTANVVLGETYG 132
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCI 253
VDTHV ISK + VP A + L + IP+E + + L G+ +C
Sbjct: 133 IPGIAVDTHVERISKRLDIVPQKASVLEVEEKLMKLIPEERWVESHHHLIFFGRY--HCT 190
Query: 254 KKGGNRQRKESAGNLCPLLNYCEKSNK 280
+ + CP+L YC+ K
Sbjct: 191 ARAPKCEE-------CPVLEYCKFGKK 210
>gi|365967585|ref|YP_004949147.1| endonuclease III [Aggregatibacter actinomycetemcomitans ANH9381]
gi|415765627|ref|ZP_11482819.1| endonuclease III [Aggregatibacter actinomycetemcomitans D17P-3]
gi|415768390|ref|ZP_11483692.1| endonuclease III [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416036134|ref|ZP_11573628.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
gi|416048847|ref|ZP_11576433.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|416073952|ref|ZP_11584368.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|416107504|ref|ZP_11590471.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|429734757|ref|ZP_19268761.1| endonuclease III [Aggregatibacter actinomycetemcomitans Y4]
gi|444346704|ref|ZP_21154668.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|347992135|gb|EGY33555.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|347996773|gb|EGY37827.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
gi|348005053|gb|EGY45542.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|348007012|gb|EGY47358.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|348653798|gb|EGY69474.1| endonuclease III [Aggregatibacter actinomycetemcomitans D17P-3]
gi|348657959|gb|EGY75537.1| endonuclease III [Aggregatibacter actinomycetemcomitans D17P-2]
gi|365746498|gb|AEW77403.1| endonuclease III [Aggregatibacter actinomycetemcomitans ANH9381]
gi|429151278|gb|EKX94152.1| endonuclease III [Aggregatibacter actinomycetemcomitans Y4]
gi|443541522|gb|ELT51949.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
Length = 211
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 79/196 (40%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA L T + +LA ++ I+ GL +KA I
Sbjct: 33 LIAVILSAQATDKGVNKATDKLFPVANTPQTILALGVDGLKEYIKTIGLFNSKAENIIKT 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E + E +A L G+G KT VL VDTH+F
Sbjct: 93 CRDLIEKHNG---------DVPEDRAALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ G+ P D K L + +P E K D++ L HG+ C+ RK
Sbjct: 144 VCNRTGFAP-GKDVVKVEEKLIKVVPAEFKVDVHHWLILHGRY--TCV------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G C + + CE +KT
Sbjct: 195 G-ACIIEDLCEYKDKT 209
>gi|302818184|ref|XP_002990766.1| hypothetical protein SELMODRAFT_161136 [Selaginella moellendorffii]
gi|300141504|gb|EFJ08215.1| hypothetical protein SELMODRAFT_161136 [Selaginella moellendorffii]
Length = 470
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A +K L + E G + LE++R + + K L RG+G K+V C+ + L FP
Sbjct: 6 AGRMKGFLDRVYEEHGSIDLEWIRDVPPQDAKDFLLSIRGLGLKSVECIRLLALDHLAFP 65
Query: 199 VDTHVFEISKAIGWVP 214
VDT+V I +GWVP
Sbjct: 66 VDTNVGRILVRLGWVP 81
>gi|146318468|ref|YP_001198180.1| EndoIII-related endonuclease [Streptococcus suis 05ZYH33]
gi|145689274|gb|ABP89780.1| Predicted EndoIII-related endonuclease [Streptococcus suis 05ZYH33]
Length = 227
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 9/146 (6%)
Query: 89 TVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKC 148
+LS TT+A KA L + FPT + + AAE K IE I GL KA +K+ +
Sbjct: 58 VLLSAQTTDAAVNKATPGLFAAFPTPQAMAAAEVKDIEPYISRLGLYRNKAKFLKDCAQQ 117
Query: 149 LLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
L+E + + + + EL G+G KT VL F VDTHV I K
Sbjct: 118 LMERHNGI---------VPQTREELEALAGVGRKTANVVLSVGFGIPAFAVDTHVGRICK 168
Query: 209 AIGWVPTAADRNKTYLHLNQRIPKEL 234
V +A +T + + +P EL
Sbjct: 169 HHDIVKKSATPLETKKRVMEVLPPEL 194
>gi|85710081|ref|ZP_01041146.1| endonuclease III family protein [Erythrobacter sp. NAP1]
gi|85688791|gb|EAQ28795.1| endonuclease III family protein [Erythrobacter sp. NAP1]
Length = 234
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 12/200 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV V+ T A S + L + + +WE V AA +E ++ A +K
Sbjct: 42 LVHGVIGAQTKTAASNASTDGLIAEYGSWEAVAAAPVGDLEARLQRQTFPTVAAQRLKQC 101
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL-MFHLQQDDFPVDTHVF 204
L ++E +G + L +L L E A L G+ K A V+ + +D H
Sbjct: 102 LNTIIEQRGSVDLRHLSNLETAEAMAWLETLPGVARKNSAGVMNASSFNRRAMVIDGHHR 161
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELK---FDLNCLLYTHGKLCRNCIKKGGNRQR 261
I + +G VP AD KTY L +P+E D + LL KL + C +
Sbjct: 162 RIMQRMGIVPAKADTAKTYDALMPIVPEEWSAADIDEHHLLLK--KLGQTCCRP------ 213
Query: 262 KESAGNLCPLLNYCEKSNKT 281
+ + CP CE + K+
Sbjct: 214 RAALCEDCPAAPDCETARKS 233
>gi|261867807|ref|YP_003255729.1| endonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413139|gb|ACX82510.1| endonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 211
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 79/196 (40%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA L T + +LA ++ I+ GL +KA I
Sbjct: 33 LIAVILSAQATDKGVNKATDKLFPVANTPQTILALGVDGLKEYIKTIGLFNSKAENIIKT 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E + E +A L G+G KT VL VDTH+F
Sbjct: 93 CRDLIEKHNG---------DVPEDRAALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ G+ P D K L + +P E K D++ L HG+ C+ RK
Sbjct: 144 VCNRTGFAP-GKDVVKVEEKLIKVVPAEFKVDVHHWLILHGRY--TCV------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G C + + CE +KT
Sbjct: 195 G-ACIIEDLCEYKDKT 209
>gi|261821590|ref|YP_003259696.1| endonuclease III [Pectobacterium wasabiae WPP163]
gi|261605603|gb|ACX88089.1| endonuclease III [Pectobacterium wasabiae WPP163]
gi|385871832|gb|AFI90352.1| Endonuclease III [Pectobacterium sp. SCC3193]
Length = 211
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T E +L +++ I+ GL +KA +N+
Sbjct: 33 LIAVLLSAQATDVSVNKATAKLYPVANTPEALLELGVDGVKSYIKTIGLFNSKA---ENV 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K +L LE +G + E +A L G+G KT VL VDTH+F
Sbjct: 90 IKTC-----RLLLEKHQG-QVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S G+ P + + L + +P E K D + L HG+ CI RK
Sbjct: 144 VSNRTGFAP-GKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE K
Sbjct: 195 GS-CLIEDLCEFGEKV 209
>gi|146320661|ref|YP_001200372.1| EndoIII-related endonuclease [Streptococcus suis 98HAH33]
gi|145691467|gb|ABP91972.1| Predicted EndoIII-related endonuclease [Streptococcus suis 98HAH33]
Length = 227
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 89 TVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKC 148
+LS TT+A KA L + FPT + + AAE K IE I GL KA +K+ +
Sbjct: 58 VLLSAQTTDAAVNKATPGLFAAFPTPQAMAAAEVKDIEPYISRLGLYRNKAKFLKDCAQQ 117
Query: 149 LLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
L+E + + + + EL G+G KT VL F VDTHV I K
Sbjct: 118 LMERHNGI---------VPQTREELEALAGVGRKTANVVLSVGFGIPAFAVDTHVGRICK 168
Query: 209 AIGWVPTAADRNKTYLHLNQRIPKELKFDLN-CLLYTHGKLC 249
V +A +T + + +P EL + ++Y ++C
Sbjct: 169 HHDIVKKSATPLETEKRVMEVLPPELWLPAHQAMIYLGREVC 210
>gi|398993563|ref|ZP_10696509.1| endonuclease III [Pseudomonas sp. GM21]
gi|398134559|gb|EJM23709.1| endonuclease III [Pseudomonas sp. GM21]
Length = 212
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 85/207 (41%), Gaps = 31/207 (14%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLK--STFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
S + L+ +LS +T+ KA A L + P H L E + I+ GL +K
Sbjct: 28 SPFELLIAVILSAQSTDVGVNKATAKLYPVANTPAAIHALGVEG--LSEYIKTIGLFNSK 85
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A + + L+E G + + + EL G+G KT VL +Q
Sbjct: 86 AKNVIETCRLLVERHGG---------EVPQTREELEALPGVGRKTANVVLNTAFRQLTMA 136
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGKLCRNCIK 254
VDTH+F +S G P K + + Q+ +PK+ D + L HG+ C+
Sbjct: 137 VDTHIFRVSNRTGIAP-----GKNVVEVEQKLMKFVPKQYLLDSHHWLILHGRYV--CL- 188
Query: 255 KGGNRQRKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE KT
Sbjct: 189 -----ARKPRCGS-CRIEDLCEYKQKT 209
>gi|398826468|ref|ZP_10584712.1| endonuclease III [Bradyrhizobium sp. YR681]
gi|398221106|gb|EJN07534.1| endonuclease III [Bradyrhizobium sp. YR681]
Length = 255
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 75/178 (42%), Gaps = 12/178 (6%)
Query: 72 NEYDEGEEESV--LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
N +GE E V LV VLS T+A KA +L T + +L ++ + + I
Sbjct: 62 NPEPKGELEHVNPFTLLVAVVLSAQATDAGVNKATRALFEVADTPQKMLDLGEERLRDYI 121
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
+ GL TKA KN++ KL E+ G + +AE+ G G KT VL
Sbjct: 122 KTIGLYRTKA---KNVIGL----SAKLLSEF--GGEVPRTRAEIESLPGAGRKTANVVLN 172
Query: 190 FHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ VDTHVF + G P + L L + IP E + L HG+
Sbjct: 173 MAFGEHTMAVDTHVFRVGNRTGLAPGKTPLD-VELGLEKIIPSEYMLHAHHWLILHGR 229
>gi|268317390|ref|YP_003291109.1| endonuclease III [Rhodothermus marinus DSM 4252]
gi|262334924|gb|ACY48721.1| endonuclease III [Rhodothermus marinus DSM 4252]
Length = 267
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 23/169 (13%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS T+A + +L + FPT E + AAE + + IR +KA +
Sbjct: 21 LVAVMLSAQCTDARVNQVTPALFAAFPTVEALAAAEPEDVLPYIRSVSYPNSKARHLVAA 80
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFR---GIGPKTVACVLMFHLQQDDFPVDTH 202
+ + ++ G EI A L G+GPKT V PVDTH
Sbjct: 81 ARRIRDAFG------------GEIPASLEALESLPGVGPKTARVVASVAFGVAALPVDTH 128
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF----DLNCLLYTHGK 247
V+ ++ IG V R +T L + +R+ ++L + + LL HG+
Sbjct: 129 VYRVAHRIGLV----RRARTPLEVERRLKRQLPARDWGEAHHLLILHGR 173
>gi|255528039|ref|ZP_05394875.1| endonuclease III [Clostridium carboxidivorans P7]
gi|296185709|ref|ZP_06854118.1| endonuclease III [Clostridium carboxidivorans P7]
gi|255508278|gb|EET84682.1| endonuclease III [Clostridium carboxidivorans P7]
gi|296049837|gb|EFG89262.1| endonuclease III [Clostridium carboxidivorans P7]
Length = 212
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 20/191 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T+ L + T E ++ ++ + IR G K+ I
Sbjct: 33 LISTILSAQCTDVRVNMVTEKLYEKYNTPETMITLTEEELSEKIRSCGFYKNKSKNILGA 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K +LE+ GK + + EL + G+G KT VL VDTHVF
Sbjct: 93 TKAILENGGK----------VPDTMEELLKLPGVGRKTANVVLSNAFGVPAIAVDTHVFR 142
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S +G + + L + +P+++ D + L HG+L C + RK
Sbjct: 143 VSNRLG-IAKGDTPEQVEKGLMKNVPRDMWSDTHHYLIWHGRLI--C------KSRKPDC 193
Query: 266 GNLCPLLNYCE 276
CPL YCE
Sbjct: 194 EK-CPLAPYCE 203
>gi|378828254|ref|YP_005190986.1| endonuclease III [Sinorhizobium fredii HH103]
gi|365181306|emb|CCE98161.1| putative endonuclease III protein [Sinorhizobium fredii HH103]
Length = 275
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 76 EGEEESV--LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
+GE E V LV LS T+A KA L + T E +LA ++ + +AI+ G
Sbjct: 68 KGELEHVNAFTLLVAVALSAQATDAGVNKATRPLFAVADTPEKMLALGEEKLRDAIKTIG 127
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L KA KN++ +L ++ G ++ + + EL G+G KT VL
Sbjct: 128 LYRNKA---KNVIAL----SERLIADF--GGAVPKTREELMTLPGVGRKTANVVLQMAFG 178
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL----- 248
Q VDTH+F I+ I P ++ +L + IP++ + + L HG+
Sbjct: 179 QSTIAVDTHLFRIANRIRLAPGKTP-DEVEANLMRVIPQKYLYHAHHWLILHGRYVCKAR 237
Query: 249 ---CRNCI 253
C CI
Sbjct: 238 RPECERCI 245
>gi|358636813|dbj|BAL24110.1| endonuclease III [Azoarcus sp. KH32C]
Length = 212
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+ + A L + PT E ++ ++ + + I+ GL KA + +
Sbjct: 35 LVAVVLSAQATDKSVNLATRGLFAAAPTPEEMITLGEEGVASHIKTIGLYRNKAKNVVAL 94
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE + + L G+G KT VL +Q VDTH+F
Sbjct: 95 SRLLLERHAG---------EVPANREALEALPGVGRKTANVVLNTVFRQPVMAVDTHIFR 145
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
++ G P D L +R+PKE D + L HG+
Sbjct: 146 VANRTGLAP-GKDVLAVEEALMKRVPKEYLLDAHHWLILHGR 186
>gi|126463452|ref|YP_001044566.1| endonuclease III [Rhodobacter sphaeroides ATCC 17029]
gi|126105116|gb|ABN77794.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Rhodobacter sphaeroides ATCC 17029]
Length = 214
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 79/196 (40%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS T+A KA +L + T +L ++ + IR GL KA +N+
Sbjct: 37 LVAVALSAQATDAGVNKATRALFAQVTTPAQMLELGEEGLTEHIRTIGLYRNKA---RNV 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ + +L ++ G + +A L G+G KT VL Q VDTH+F
Sbjct: 94 I-----ALSRLLVDQYDG-EVPSSRAALQSLPGVGRKTANVVLNMWFHQPAMAVDTHIFR 147
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
++ G P D + L +P + L HG+ C+ RK
Sbjct: 148 VANRTGIAP-GRDVDAVERALEDHVPAPFALHAHHWLILHGRYI--CVA------RKPRC 198
Query: 266 GNLCPLLNYCEKSNKT 281
G +CP+ + C KT
Sbjct: 199 G-ICPIRDLCPYEEKT 213
>gi|345430158|ref|YP_004823278.1| DNA glycosylase and apyrimidinic (AP) lyase [Haemophilus
parainfluenzae T3T1]
gi|301156221|emb|CBW15692.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
[Haemophilus parainfluenzae T3T1]
Length = 211
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 88/220 (40%), Gaps = 24/220 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
R++N P EY+ S + L+ +LS T+ KA A L T + +L
Sbjct: 14 REQNPHPTTELEYN-----SPFELLIAVILSAQATDKGVNKATAKLFPVANTPQAILDLG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
+ ++ I+ GL +KA I + L+E + E + L G+G
Sbjct: 69 LEGLKEYIKTIGLYNSKAENIIKTCRDLVEKHNG---------EVPESREALEALAGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL VDTH+F + + P D K L + +PKE K D++
Sbjct: 120 KTANVVLNTAFGHPTIAVDTHIFRVCNRTNFAP-GKDVVKVEEKLLKVVPKEFKVDVHHW 178
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G C + + CE KT
Sbjct: 179 LILHGRY--TCI------ARKPRCG-ACLIEDLCEYKEKT 209
>gi|208779428|ref|ZP_03246774.1| endonuclease III [Francisella novicida FTG]
gi|208745228|gb|EDZ91526.1| endonuclease III [Francisella novicida FTG]
Length = 212
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E S + L+ +LS T+ KA L T E + A ++ + I+ GL
Sbjct: 23 ELEYTSNFELLIAVILSAQATDVGVNKATKVLFKVANTPEQIYALGEQKLAGYIKSIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA + K L+E G + + +L G+G KT VL +
Sbjct: 83 KTKAKNVIATCKDLIEKFGSIVPDNFD---------DLISLAGVGRKTANVVLNTAFGKP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLH--LNQRIPKELKFDLNCLLYTHGKL----- 248
VDTH+F ++ I P A +N + L + IPKE D + + HG+
Sbjct: 134 TMAVDTHIFRLANRI---PLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICTAQ 190
Query: 249 ---CRNCI 253
CRNCI
Sbjct: 191 RPKCRNCI 198
>gi|393241149|gb|EJD48672.1| DNA glycosylase [Auricularia delicata TFB-10046 SS5]
Length = 253
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 103/257 (40%), Gaps = 37/257 (14%)
Query: 19 PYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGE 78
P P H R + +RD L+A P + + +K + K V
Sbjct: 8 PAPAHWREVYDTIHRMRDNLVA----PVDTMGCHTPAMKEEDPKTKRYV----------- 52
Query: 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAP 136
LV +LS T + + A +L+ T +++LAA+ I AI G
Sbjct: 53 ------TLVALMLSSQTKDEVTHAAVMNLREALGGLTVDNILAADDSVISGAIAKVGFWR 106
Query: 137 TKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD- 195
K +K ++ KL E+ + + EL G+GPK L + +
Sbjct: 107 RKTEYLK-------KAAQKLRDEF--DSDVPKTVDELCSLPGVGPKMAFLCLQSAWKLNV 157
Query: 196 DFPVDTHVFEISKAIGW-VPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIK 254
VDTHV I+ +GW PT +T L+L +PK+L +D+N +L G+ C+
Sbjct: 158 GIGVDTHVHRITNRLGWHKPTTTTPEQTRLNLQSWLPKDLHYDVNHMLVGFGQTI--CLP 215
Query: 255 KGGNRQRKE-SAGNLCP 270
G E SA LCP
Sbjct: 216 VGPKCDVCELSAKKLCP 232
>gi|389856669|ref|YP_006358912.1| Endonuclease III/Nth [Streptococcus suis ST1]
gi|353740387|gb|AER21394.1| Endonuclease III/Nth [Streptococcus suis ST1]
Length = 224
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 89 TVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKC 148
+LS TT+A KA L + FPT + + AAE K IE I GL KA +K+ +
Sbjct: 55 VLLSAQTTDAAVNKATPGLFAAFPTPQAMAAAEVKDIEPYISRLGLYRNKAKFLKDCAQQ 114
Query: 149 LLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
L+E + + + + EL G+G KT VL F VDTHV I K
Sbjct: 115 LMERHNGI---------VPQTREELEALAGVGRKTANVVLSVGFGIPAFAVDTHVGRICK 165
Query: 209 AIGWVPTAADRNKTYLHLNQRIPKELKFDLN-CLLYTHGKLC 249
V +A +T + + +P EL + ++Y ++C
Sbjct: 166 HHDIVKKSATPLETEKRVMELLPPELWLPAHQAMIYFGREVC 207
>gi|342732970|ref|YP_004771809.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384456337|ref|YP_005668934.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417967782|ref|ZP_12608847.1| Endonuclease III [Candidatus Arthromitus sp. SFB-co]
gi|418015623|ref|ZP_12655188.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|418373221|ref|ZP_12965312.1| Endonuclease III [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342330425|dbj|BAK57067.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345505958|gb|EGX28252.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|346984682|dbj|BAK80358.1| endonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380340820|gb|EIA29370.1| Endonuclease III [Candidatus Arthromitus sp. SFB-co]
gi|380341610|gb|EIA30084.1| Endonuclease III [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 209
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 19/201 (9%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E +S L+ TVLS TT+ + +L +P E L ++K +++ I+ GL
Sbjct: 22 ELEYKSPFQLLIATVLSAQTTDKKVNEVTKNLFIEYPRLEDFLKLDEKELQDKIKSIGLY 81
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
K+ I N+ + L E + + EL G+G KT V+
Sbjct: 82 RMKSKNIINLCRILEERFDS---------EVPRTRDELITLPGVGRKTANVVISNCFGVQ 132
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
F VD HVF +S IG + + KT L L + I + L + + HG+ C C
Sbjct: 133 AFAVDVHVFRVSNRIG-IANSPTPEKTELDLMKNIDENLWTICHHTIIFHGRRC--CT-- 187
Query: 256 GGNRQRKESAGNLCPLLNYCE 276
RK + G C + YC+
Sbjct: 188 ----SRKPNCGE-CKISEYCK 203
>gi|402698707|ref|ZP_10846686.1| endonuclease III [Pseudomonas fragi A22]
Length = 212
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 21/202 (10%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T E + A + + I+ GL +KA
Sbjct: 28 SPFELLIAVILSAQATDVSVNKAMAKLFPVANTPEAIYALGVEGLSQYIKTIGLYNSKA- 86
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
KN+++ +L +E G + + + EL G+G KT VL +Q VD
Sbjct: 87 --KNVIETC-----RLLIERHAG-QVPQTREELEALPGVGRKTANVVLNTAFRQLTMAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNR 259
TH+F +S G P + + L + +PK D + L HG+ +C +
Sbjct: 139 THIFRVSNRTGIAP-GKNVVEVEKQLMKFVPKPYLLDAHHWLILHGRYVC---------Q 188
Query: 260 QRKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE KT
Sbjct: 189 ARKPRCGS-CRIEDLCEFKQKT 209
>gi|238763083|ref|ZP_04624049.1| Endonuclease III [Yersinia kristensenii ATCC 33638]
gi|238698582|gb|EEP91333.1| Endonuclease III [Yersinia kristensenii ATCC 33638]
Length = 204
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T + +L + +++ I+ GL TKA +N+
Sbjct: 24 LISVLLSAQATDVSVNKATAKLYPVANTPQAILDLGVEGLKSYIKTIGLFNTKA---ENV 80
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K ++ LE +G + E +A L G+G KT VL VDTH+F
Sbjct: 81 IKTC-----RILLEKHQG-EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 134
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ G+ P ++ ++ L + +P E K D + L HG+ C+ RK
Sbjct: 135 VCNRTGFAP-GSNVDQVETKLLKVVPAEFKLDCHHWLILHGRY--TCV------ARKPRC 185
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE K
Sbjct: 186 GS-CIIEDLCEFKEKV 200
>gi|167835948|ref|ZP_02462831.1| endonuclease III [Burkholderia thailandensis MSMB43]
gi|424902624|ref|ZP_18326140.1| endonuclease III [Burkholderia thailandensis MSMB43]
gi|390932999|gb|EIP90399.1| endonuclease III [Burkholderia thailandensis MSMB43]
Length = 214
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 10/179 (5%)
Query: 69 LDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENA 128
L+ + E E + + L+ +LS T+ + KA + T + ++A ++ + +
Sbjct: 16 LNPHPTTELEYTTPFELLIAVMLSAQATDVSVNKAMRKMFPVANTPKRIVALGEEGVADY 75
Query: 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
IR GL TKA KN++ + ++ LE G + + L G+G KT VL
Sbjct: 76 IRTIGLYRTKA---KNVV-----AASRILLERYDG-EVPADREALESLPGVGRKTANVVL 126
Query: 189 MFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
Q VDTH+F ++ G P D L + PKE D + L HG+
Sbjct: 127 NTAFGQPTIAVDTHIFRVANRTGLAP-GKDVRAVEAALEKFTPKEFLHDAHHWLILHGR 184
>gi|379005350|ref|YP_005261022.1| putative EndoIII-related endonuclease [Pyrobaculum oguniense TE7]
gi|375160803|gb|AFA40415.1| putative EndoIII-related endonuclease [Pyrobaculum oguniense TE7]
Length = 218
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLA 135
E ++ + LV VLSQNT++ N+ KAF +LK T E + +E I+ G+
Sbjct: 27 EGGNLFETLVAVVLSQNTSDKNAFKAFQNLKKRLGSITPESLRGISLGELEELIKPAGMY 86
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
+A +K + + ++ E L + D + L G+G KT A V++ +L
Sbjct: 87 RQRARYLKALADAFITL--EITPEKLVKMGADAARKLLMGLPGVGRKT-ADVVLVNLGLP 143
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQR 229
FPVDTH+ I+K G D ++ ++ Q+
Sbjct: 144 AFPVDTHITRIAKRWGVGSRYEDISRWFMEQLQK 177
>gi|330994167|ref|ZP_08318095.1| Endonuclease III [Gluconacetobacter sp. SXCC-1]
gi|329758634|gb|EGG75150.1| Endonuclease III [Gluconacetobacter sp. SXCC-1]
Length = 232
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 12/163 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A+ +A L PT + ++ ++ + IR GL TKA + ++
Sbjct: 47 LVAVVLSAQATDASVNRATVGLFRDAPTPKAMVELGEEKVGEHIRTIGLWRTKAHNVVSL 106
Query: 146 LKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
+ LLE G++ + +A L G+G KT V+ VDTH+F
Sbjct: 107 SRQLLERFDGRVPYD----------RAALESLPGVGRKTANVVMNVAFGDSTMAVDTHIF 156
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I G P A+ R L +RIP ++ + L HG+
Sbjct: 157 RIGNRTGLAPGASVR-AVEDQLVRRIPADMLRPAHHWLILHGR 198
>gi|227326044|ref|ZP_03830068.1| endonuclease III [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 211
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T E +L ++ I+ GL +KA +N+
Sbjct: 33 LIAVLLSAQATDVSVNKATAKLYPVANTPEALLELGVDGVKGYIKTIGLFNSKA---ENV 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K +L LE +G + E +A L G+G KT VL VDTH+F
Sbjct: 90 IKTC-----RLLLEKHQG-QVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S G+ P + + L + +P E K D + L HG+ CI RK
Sbjct: 144 VSNRTGFAP-GKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE K
Sbjct: 195 GS-CLIEDLCEFGEKV 209
>gi|421079568|ref|ZP_15540506.1| Endonuclease III [Pectobacterium wasabiae CFBP 3304]
gi|401705654|gb|EJS95839.1| Endonuclease III [Pectobacterium wasabiae CFBP 3304]
Length = 211
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 19/195 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T E +L +++ I+ GL +KA +N+
Sbjct: 33 LIAVLLSAQATDVSVNKATAKLYPVANTPEALLELGVDGVKSYIKTIGLFNSKA---ENV 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K +L LE +G + E +A L G+G KT VL VDTH+F
Sbjct: 90 IKTC-----RLLLEKHQG-QVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S G+ P + + L + +P E K D + L HG+ CI RK
Sbjct: 144 VSNRTGFAP-GKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNK 280
G+ C + + CE K
Sbjct: 195 GS-CLIEDLCEFGEK 208
>gi|386581789|ref|YP_006078193.1| Endonuclease III/Nth [Streptococcus suis SS12]
gi|386586131|ref|YP_006082533.1| Endonuclease III/Nth [Streptococcus suis D12]
gi|386588023|ref|YP_006084424.1| Endonuclease III/Nth [Streptococcus suis A7]
gi|353733935|gb|AER14945.1| Endonuclease III/Nth [Streptococcus suis SS12]
gi|353738277|gb|AER19285.1| Endonuclease III/Nth [Streptococcus suis D12]
gi|354985184|gb|AER44082.1| Endonuclease III/Nth [Streptococcus suis A7]
Length = 224
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 89 TVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKC 148
+LS TT+A KA L + FPT + + AAE K IE I GL KA +K+ +
Sbjct: 55 VLLSAQTTDAAVNKATPGLFAAFPTPQAMAAAEVKDIEPYISRLGLYRNKAKFLKDCAQQ 114
Query: 149 LLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
L+E + + + + EL G+G KT VL F VDTHV I K
Sbjct: 115 LMERHNGI---------VPQTREELEALAGVGRKTANVVLSVGFGIPAFAVDTHVGRICK 165
Query: 209 AIGWVPTAADRNKTYLHLNQRIPKELKFDLN-CLLYTHGKLC 249
V +A +T + + +P EL + ++Y ++C
Sbjct: 166 HHDIVKKSATPLETEKRVMEVLPPELWLPAHQAMIYFGREVC 207
>gi|329766249|ref|ZP_08257807.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137308|gb|EGG41586.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 170
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Query: 71 MNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIR 130
+ E E E S L+ T+LS T + + KA L S + + + A+ K +E I+
Sbjct: 16 LRELHEAETGS-FSILIGTILSARTKDETTTKAVKVLFSKYKNAKELANAKTKDVEKIIK 74
Query: 131 CGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF 190
G K+ I + K +++SK K G D ++ +L G+G KT CVL++
Sbjct: 75 SIGFYHVKSKRIIEVAK-IIDSKYK-------GKVPDNLE-KLVELPGVGRKTANCVLVY 125
Query: 191 HLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKEL 234
+ PVD HV IS +G V T +T L + IPK++
Sbjct: 126 AFDKPAIPVDIHVHRISNRLGLVNTKTP-EETEHELMRIIPKKI 168
>gi|227485039|ref|ZP_03915355.1| DNA-(apurinic or apyrimidinic site) lyase [Anaerococcus
lactolyticus ATCC 51172]
gi|227237036|gb|EEI87051.1| DNA-(apurinic or apyrimidinic site) lyase [Anaerococcus
lactolyticus ATCC 51172]
Length = 201
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T+LS T+ + K + T E + K +EN IR G+ KA IK
Sbjct: 23 LVATILSAQATDISVNKVTKEMFKVANTPEDFANMDIKELENHIRTIGIYRNKAKNIKAA 82
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+E + + K EL + G+G KT V VDTHVF
Sbjct: 83 SKILIEDYNSI---------VPADKKELQKLPGVGRKTANVVCANAFGIPSIAVDTHVFR 133
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
++ IG + A + +KT L +R+ K + L THG+ LC+
Sbjct: 134 VANRIG-LADANNVDKTQDQLEKRLDKSRWSKTHHQLITHGRVLCK 178
>gi|425063080|ref|ZP_18466205.1| Endonuclease III [Pasteurella multocida subsp. gallicida X73]
gi|404383196|gb|EJZ79651.1| Endonuclease III [Pasteurella multocida subsp. gallicida X73]
Length = 210
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 86/220 (39%), Gaps = 24/220 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD N P Y S + L+ +LS T+ KA L T + +L
Sbjct: 14 RDHNLHPTTELNYS-----SPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
++ I+ GL +KA I + L+E I E ++ L G+G
Sbjct: 69 LDGLKEYIKTIGLYNSKAENIIKTCRDLIEKHNG---------EIPENRSALEALAGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL VDTH+F +S G+ P D K L + +P E K D++
Sbjct: 120 KTANVVLNTAFGHPTIAVDTHIFRVSNRTGFAP-GKDVVKVEEKLLKVVPDEFKVDVHHW 178
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G+ C + + CE KT
Sbjct: 179 LILHGRY--TCI------ARKPRCGS-CLIEDLCEFKEKT 209
>gi|302850094|ref|XP_002956575.1| hypothetical protein VOLCADRAFT_33476 [Volvox carteri f.
nagariensis]
gi|300258102|gb|EFJ42342.1| hypothetical protein VOLCADRAFT_33476 [Volvox carteri f.
nagariensis]
Length = 198
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 10/167 (5%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S LV VLS +T+A L + P + A + IE IR GLAPTKA
Sbjct: 26 STFQLLVAVVLSAQSTDAKVNTVTPELFARGPDAMAMAALKVSEIERIIRVLGLAPTKAR 85
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
++ + + L+E L G + + + L G+G KT + V+ FPVD
Sbjct: 86 NVQRLSQMLVE---------LYGGQVPDSFSALEELPGVGHKTASVVMCQAFSHPAFPVD 136
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
TH+ +++ G + +T L +P+ DL+ + G+
Sbjct: 137 THIHRLAQRWG-LSNGKSVEQTEQDLKTLLPEHTWRDLHLQMIYFGR 182
>gi|388580364|gb|EIM20679.1| DNA glycosylase [Wallemia sebi CBS 633.66]
Length = 344
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 118 LAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGK-----LCLEYLRGLSIDEIKAE 172
LA E +E+ +R G +A + N+ K L+E G L LR S + + +
Sbjct: 138 LAGED--VEDTLRTLGFG-YRAKYVANVAKMLVEEHGSDENIFTYLHSLRKESYENVIPQ 194
Query: 173 LSRFRGIGPKTVACVLMFHL-QQDDFPVDTHVFEIS 207
L+R G+GPK CV + L Q PVDTHV++I+
Sbjct: 195 LTRMMGVGPKVADCVALMSLDQHSSIPVDTHVWQIA 230
>gi|385793008|ref|YP_005825984.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678333|gb|AEE87462.1| Endonuclease III [Francisella cf. novicida Fx1]
Length = 212
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E S + L+ +LS T+ KA L T E + A ++ + I+ GL
Sbjct: 23 ELEYTSNFELLIAVILSAQATDVGVNKATKVLFKVANTPEQIYALGEQKLAEYIKSIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA + K L+E G + + +L G+G KT VL +
Sbjct: 83 KTKAKNVIATCKDLIEKFGSIVPDNFD---------DLISLAGVGRKTANVVLNTSFGKP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLH--LNQRIPKELKFDLNCLLYTHGKL----- 248
VDTH+F ++ I P A +N + L + IPKE D + + HG+
Sbjct: 134 TMAVDTHIFRLANRI---PLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICTAQ 190
Query: 249 ---CRNCI 253
CRNCI
Sbjct: 191 RPKCRNCI 198
>gi|55821227|ref|YP_139669.1| endonuclease III, DNA repair [Streptococcus thermophilus LMG 18311]
gi|55737212|gb|AAV60854.1| endonuclease III, DNA repair [Streptococcus thermophilus LMG 18311]
Length = 219
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 18/210 (8%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
+ + E E E+ LV +LS TT+ K L + +P E + +A +E +R
Sbjct: 25 DAHGELEWETPFQLLVAVILSAQTTDKAVNKVTPGLWARYPEIEDLASANLDDVEMCLRT 84
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL KA KNI+K + L G + + EL G+G KT VL
Sbjct: 85 IGLYKNKA---KNIIKT-----ARAILMNFDG-QVPKTHKELESLPGVGRKTANVVLAEV 135
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
VDTHV +SK + P A + L ++IPK+ + + G+ +
Sbjct: 136 YGIPSIAVDTHVSRVSKRLNIAPENASVEEIEAELMKKIPKKDWIISHHRMIFFGRY--H 193
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K Q CPL +YC+ +T
Sbjct: 194 CLAKNPKCQT-------CPLQSYCKYYRET 216
>gi|365857074|ref|ZP_09397074.1| endonuclease III, partial [Acetobacteraceae bacterium AT-5844]
gi|363716839|gb|EHM00232.1| endonuclease III, partial [Acetobacteraceae bacterium AT-5844]
Length = 260
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS T+ + KA A+L T E ++A ++ + IR GL KA + +
Sbjct: 78 LVAVALSAQATDVSVNKATATLFKEADTPEAMVALGEEGLAKHIRTIGLWKGKARNVIAM 137
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G + +A L G+G KT VL ++ VDTH+F
Sbjct: 138 SRLLLERHGG---------EVPADRAALEALPGVGRKTANVVLNVAFGEEAMAVDTHIFR 188
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ G P R + L +R P EL D + L HG+
Sbjct: 189 LGNRTGLAPGKTPR-EVEDALVKRCPPELLRDAHHWLILHGR 229
>gi|417091041|ref|ZP_11956237.1| Endonuclease III/Nth [Streptococcus suis R61]
gi|353533301|gb|EHC02960.1| Endonuclease III/Nth [Streptococcus suis R61]
Length = 224
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 89 TVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKC 148
+LS TT+A KA L + FPT + + AAE K IE I GL KA +K+ +
Sbjct: 55 VLLSAQTTDAAVNKATPGLFAAFPTPQAMAAAEVKDIEPYISRLGLYRNKAKFLKDCAQQ 114
Query: 149 LLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
L+E + + + + EL G+G KT VL F VDTHV I K
Sbjct: 115 LMERHNGI---------VPQTREELEALAGVGRKTANVVLSVGFGIPAFAVDTHVGRICK 165
Query: 209 AIGWVPTAADRNKTYLHLNQRIPKELKFDLN-CLLYTHGKLC 249
V +A +T + + +P EL + ++Y ++C
Sbjct: 166 HHDIVKKSATPLETEKRVMEVLPPELWLPAHQAMIYFGREVC 207
>gi|221199572|ref|ZP_03572616.1| endonuclease III [Burkholderia multivorans CGD2M]
gi|221205528|ref|ZP_03578543.1| endonuclease III [Burkholderia multivorans CGD2]
gi|221174366|gb|EEE06798.1| endonuclease III [Burkholderia multivorans CGD2]
gi|221180857|gb|EEE13260.1| endonuclease III [Burkholderia multivorans CGD2M]
Length = 214
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 10/179 (5%)
Query: 69 LDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENA 128
L+ + E E + + L+ +LS T+ + KA + T + ++A ++ +
Sbjct: 16 LNPHPTTELEYSTPFELLIAVMLSAQATDVSVNKAMRKMFPVANTPQQIVALGEEGVAEY 75
Query: 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
I+ GL TKA + + LLE G + + L G+G KT VL
Sbjct: 76 IKTIGLYRTKAKNVVAACRILLERYGG---------EVPADREALESLPGVGRKTANVVL 126
Query: 189 MFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
Q VDTH+F ++ G P D L + PKE D + L HG+
Sbjct: 127 NTAFGQPTIAVDTHIFRVANRTGLAP-GKDVKAVEAALEKFTPKEFLHDAHHWLILHGR 184
>gi|386577789|ref|YP_006074195.1| Endonuclease III/Nth [Streptococcus suis GZ1]
gi|292558252|gb|ADE31253.1| Endonuclease III/Nth [Streptococcus suis GZ1]
Length = 227
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 89 TVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKC 148
+LS TT+A KA L + FPT + + AAE K IE I GL KA +K+ +
Sbjct: 58 VLLSAQTTDAAVNKATPGLFAAFPTPQAMAAAEVKDIEPYISRLGLYRNKAKFLKDCAQQ 117
Query: 149 LLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK 208
L+E + + + + EL G+G KT VL F VDTHV I K
Sbjct: 118 LMERHNGI---------VPQTREELEALAGVGRKTANVVLSVGFGIPAFAVDTHVGRICK 168
Query: 209 AIGWVPTAADRNKTYLHLNQRIPKELKFDLN-CLLYTHGKLC 249
V +A +T + + +P EL + ++Y ++C
Sbjct: 169 HHDIVKKSATPLETEKRVMEVLPPELWLPAHQAMIYFGREVC 210
>gi|254369256|ref|ZP_04985268.1| hypothetical protein FTAG_00213 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122206|gb|EDO66346.1| hypothetical protein FTAG_00213 [Francisella tularensis subsp.
holarctica FSC022]
Length = 212
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E S + L+ +LS T+ KA L T E + A ++ + I+ GL
Sbjct: 23 ELEYTSNFELLIAVILSAQATDVGVNKATKVLFKVANTPEQIYALGEQKLAEYIKSIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA + K L+E G + + +L G+G KT VL +
Sbjct: 83 KTKAKNVIATCKDLIEKFGSIVPDNFD---------DLISLAGVGRKTANVVLNTAFGKP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLH--LNQRIPKELKFDLNCLLYTHGKL----- 248
VDTH+F ++ I P A +N + L + IPKE D + + HG+
Sbjct: 134 TMAVDTHIFRLANRI---PLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICTAQ 190
Query: 249 ---CRNCI 253
CRNCI
Sbjct: 191 RPRCRNCI 198
>gi|270261657|ref|ZP_06189930.1| hypothetical protein SOD_a08920 [Serratia odorifera 4Rx13]
gi|421783325|ref|ZP_16219775.1| endonuclease III [Serratia plymuthica A30]
gi|270045141|gb|EFA18232.1| hypothetical protein SOD_a08920 [Serratia odorifera 4Rx13]
gi|407754568|gb|EKF64701.1| endonuclease III [Serratia plymuthica A30]
Length = 211
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T +LA +++ I+ GL +KA +
Sbjct: 33 LISVLLSAQATDVSVNKATAKLYPVANTPAALLALGVDGVKSYIKTIGLFNSKAENVIKT 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE L G + E +A L G+G KT VL VDTH+F
Sbjct: 93 CRMLLE---------LHGGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ + P + ++ L + +P E K D + HG+ CI RK
Sbjct: 144 VCNRTNFAP-GKNVDQVEEKLLKVVPGEFKVDCHHWFILHGRY--TCI------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE ++KT
Sbjct: 195 GS-CIIEDLCEFADKT 209
>gi|410985533|ref|XP_003999075.1| PREDICTED: endonuclease III-like protein 1 [Felis catus]
Length = 323
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 25/221 (11%)
Query: 51 YRNQRLKHNMTRDKNSVPLDM----NEYDEGEEESV--LDGLVKTVLSQNTTEANSLKAF 104
+R Q L R P+D + YD V L+ +LS T + + A
Sbjct: 103 WRQQLLNIRTMRSGKDAPVDWLGVEHCYDSDAPPKVRRYQVLLSLMLSSQTKDQVTAGAM 162
Query: 105 ASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGL 164
L++ T + +L + + I G +K IK L + G
Sbjct: 163 QRLRARGLTVDSILQTDDSTLGTLIYPVGFWRSKVKYIKQTSAILQQRYGG--------- 213
Query: 165 SIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAIGWVPTAADR-NKT 222
I + AEL G+GPK + VDTHV I+ +GW TA + KT
Sbjct: 214 DIPDSVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANRLGWTKTATNSPEKT 273
Query: 223 YLHLNQRIPKELKFDLNCLLYTHGKL--------CRNCIKK 255
L + +P+EL ++N LL G+ C+ C+ +
Sbjct: 274 RAALEEWLPRELWGEINGLLVGFGQQTCLPVHPRCQGCLNR 314
>gi|229918737|ref|YP_002887383.1| endonuclease III [Exiguobacterium sp. AT1b]
gi|229470166|gb|ACQ71938.1| endonuclease III [Exiguobacterium sp. AT1b]
Length = 219
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 18/195 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
+V LS T+A K L FPT E + AA+ IE I+ GL KA +K +
Sbjct: 34 VVAVALSAQATDALVNKVTPGLFEAFPTVEAMAAADVSEIEALIKRIGLYRNKAKNVKAL 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ ++ G + + +A L G+G KT VL + F VDTHV
Sbjct: 94 SEKIVNEHGGI---------VPSDRASLEALPGVGRKTANVVLSVAFHEPAFAVDTHVER 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+SK +G + + L ++ P+E L+ G+ +C + +
Sbjct: 145 VSKRLGICRWKDNVRQVEDTLMKKFPREEWSQLHHQFIFFGRY--HC-------KAQRPG 195
Query: 266 GNLCPLLNYCEKSNK 280
CPLL+ C + K
Sbjct: 196 CEACPLLHMCREGKK 210
>gi|49078760|gb|AAT49817.1| PA3495, partial [synthetic construct]
Length = 213
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 27/200 (13%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + + I+ GL +KA +
Sbjct: 33 LIAVILSAQATDVGVNKATARLYPVANTPEAIHALGVEGLSEYIKTIGLYNSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + +L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILIEKHGG---------QVPDNREDLEALPGVGRKTANVVLNTAFRQLAMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGKLCRNCIKKGGNRQR 261
++ G P K L + ++ +P+E D + L HG+ C + R
Sbjct: 144 VANRTGIAP-----GKNVLEVEKKLLKFVPREYLLDAHHWLILHGRYV--C------KAR 190
Query: 262 KESAGNLCPLLNYCEKSNKT 281
K G+ C + + CE +KT
Sbjct: 191 KPQCGS-CRIEDLCEYKHKT 209
>gi|429744335|ref|ZP_19277833.1| endonuclease III [Neisseria sp. oral taxon 020 str. F0370]
gi|429163162|gb|EKY05412.1| endonuclease III [Neisseria sp. oral taxon 020 str. F0370]
Length = 220
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 18/176 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L PT + +L + + + GL TK+ I
Sbjct: 33 LIAVLLSAQATDKGVNKATARLFPAAPTPQAMLDLGLEGVMEYTQTIGLYKTKSKHIIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G + + + EL G+G KT VL Q VDTH+F
Sbjct: 93 CRILLEKHGG---------QVPQTREELEALPGVGRKTANVVLNTAFGQPVMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCI 253
+S + P D + L + +P E + + L HG+ LC CI
Sbjct: 144 VSNRMNLAP-GKDVREVEDKLMRVVPAEFLLNAHHWLILHGRYVCKAQKPLCHQCI 198
>gi|56707770|ref|YP_169666.1| endonuclease III [Francisella tularensis subsp. tularensis SCHU S4]
gi|110670241|ref|YP_666798.1| endonuclease III [Francisella tularensis subsp. tularensis FSC198]
gi|134302047|ref|YP_001122016.1| endonuclease III [Francisella tularensis subsp. tularensis
WY96-3418]
gi|254370270|ref|ZP_04986275.1| hypothetical protein FTBG_00020 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874582|ref|ZP_05247292.1| endonuclease III [Francisella tularensis subsp. tularensis
MA00-2987]
gi|379717020|ref|YP_005305356.1| Endonuclease III [Francisella tularensis subsp. tularensis TIGB03]
gi|379725624|ref|YP_005317810.1| Endonuclease III [Francisella tularensis subsp. tularensis TI0902]
gi|385794407|ref|YP_005830813.1| endonuclease III [Francisella tularensis subsp. tularensis
NE061598]
gi|421751859|ref|ZP_16188896.1| endonuclease III [Francisella tularensis subsp. tularensis AS_713]
gi|421753714|ref|ZP_16190703.1| endonuclease III [Francisella tularensis subsp. tularensis 831]
gi|421755277|ref|ZP_16192227.1| endonuclease III [Francisella tularensis subsp. tularensis
80700075]
gi|421757440|ref|ZP_16194320.1| endonuclease III [Francisella tularensis subsp. tularensis
80700103]
gi|421759297|ref|ZP_16196130.1| endonuclease III [Francisella tularensis subsp. tularensis
70102010]
gi|424674617|ref|ZP_18111533.1| endonuclease III [Francisella tularensis subsp. tularensis
70001275]
gi|56604262|emb|CAG45281.1| Endonuclease III [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320574|emb|CAL08664.1| Endonuclease III [Francisella tularensis subsp. tularensis FSC198]
gi|134049824|gb|ABO46895.1| endonuclease III [Francisella tularensis subsp. tularensis
WY96-3418]
gi|151568513|gb|EDN34167.1| hypothetical protein FTBG_00020 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840581|gb|EET19017.1| endonuclease III [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158942|gb|ADA78333.1| endonuclease III [Francisella tularensis subsp. tularensis
NE061598]
gi|377827073|gb|AFB80321.1| Endonuclease III [Francisella tularensis subsp. tularensis TI0902]
gi|377828697|gb|AFB78776.1| Endonuclease III [Francisella tularensis subsp. tularensis TIGB03]
gi|409086396|gb|EKM86515.1| endonuclease III [Francisella tularensis subsp. tularensis 831]
gi|409086586|gb|EKM86702.1| endonuclease III [Francisella tularensis subsp. tularensis AS_713]
gi|409088612|gb|EKM88676.1| endonuclease III [Francisella tularensis subsp. tularensis
80700075]
gi|409091023|gb|EKM91028.1| endonuclease III [Francisella tularensis subsp. tularensis
70102010]
gi|409092528|gb|EKM92499.1| endonuclease III [Francisella tularensis subsp. tularensis
80700103]
gi|417434661|gb|EKT89603.1| endonuclease III [Francisella tularensis subsp. tularensis
70001275]
Length = 212
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E S + L+ +LS T+ KA L T E + A ++ + I+ GL
Sbjct: 23 ELEYTSNFELLIAVILSAQATDVGVNKATKVLFKVANTPEQIYALGEQKLAEYIKSIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA + K L+E G + + +L G+G KT VL +
Sbjct: 83 KTKAKNVIATCKDLIEKFGSIVPDNFD---------DLISLAGVGRKTANVVLNTAFGKP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLH--LNQRIPKELKFDLNCLLYTHGKL----- 248
VDTH+F ++ I P A +N + L + IPKE D + + HG+
Sbjct: 134 TMAVDTHIFRLANRI---PLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICTAQ 190
Query: 249 ---CRNCI 253
CRNCI
Sbjct: 191 RPRCRNCI 198
>gi|416086449|ref|ZP_11587460.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
gi|444335005|ref|ZP_21150385.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
gi|444337345|ref|ZP_21151335.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|444348577|ref|ZP_21156200.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
gi|348009901|gb|EGY50003.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
gi|443546693|gb|ELT56313.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
gi|443547093|gb|ELT56655.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|443549577|gb|ELT58319.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
Length = 180
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 79/196 (40%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA L T + +LA ++ I+ GL +KA I
Sbjct: 2 LIAVILSAQATDKGVNKATDKLFPVANTPQTILALGVDGLKEYIKTIGLFNSKAENIIKT 61
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E + E +A L G+G KT VL VDTH+F
Sbjct: 62 CRDLIEKHNG---------DVPEDRAALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFR 112
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ G+ P D K L + +P E K D++ L HG+ C+ RK
Sbjct: 113 VCNRTGFAP-GKDVVKVEEKLIKVVPAEFKVDVHHWLILHGRY--TCV------ARKPRC 163
Query: 266 GNLCPLLNYCEKSNKT 281
G C + + CE +KT
Sbjct: 164 GA-CIIEDLCEYKDKT 178
>gi|161524126|ref|YP_001579138.1| endonuclease III [Burkholderia multivorans ATCC 17616]
gi|189351117|ref|YP_001946745.1| endonuclease III-related protein [Burkholderia multivorans ATCC
17616]
gi|421473279|ref|ZP_15921408.1| endonuclease III [Burkholderia multivorans ATCC BAA-247]
gi|421475528|ref|ZP_15923470.1| endonuclease III [Burkholderia multivorans CF2]
gi|160341555|gb|ABX14641.1| endonuclease III [Burkholderia multivorans ATCC 17616]
gi|189335139|dbj|BAG44209.1| endonuclease III-related protein [Burkholderia multivorans ATCC
17616]
gi|400221345|gb|EJO51807.1| endonuclease III [Burkholderia multivorans ATCC BAA-247]
gi|400229984|gb|EJO59808.1| endonuclease III [Burkholderia multivorans CF2]
Length = 214
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 10/179 (5%)
Query: 69 LDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENA 128
L+ + E E + + L+ +LS T+ + KA + T + ++A ++ +
Sbjct: 16 LNPHPTTELEYSTPFELLIAVMLSAQATDVSVNKAMRKMFPVANTPQQIVALGEEGVAEY 75
Query: 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
I+ GL TKA + + LLE G + + L G+G KT VL
Sbjct: 76 IKTIGLYRTKAKNVVAACRILLERYGG---------EVPADREALESLPGVGRKTANVVL 126
Query: 189 MFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
Q VDTH+F ++ G P D L + PKE D + L HG+
Sbjct: 127 NTAFGQPTIAVDTHIFRVANRTGLAP-GKDVKAVEAALEKFTPKEFLHDAHHWLILHGR 184
>gi|404329357|ref|ZP_10969805.1| endonuclease III [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 213
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 28/199 (14%)
Query: 87 VKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146
+ +LS T+A + +L + E LA + ++ IR GL TKA I+ +
Sbjct: 25 IAVMLSAQCTDALVNRVTPALFEKYHEPEDYLAVPVEELQRDIRSIGLFRTKAKHIRQMC 84
Query: 147 KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEI 206
CL+E + E + EL + GIG KT + Q VDTHV +
Sbjct: 85 ACLIEDDNG---------QLPETRDELVKLPGIGRKTANVIASVAFGQPAIAVDTHVERV 135
Query: 207 SKAIG---WVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKE 263
+K +G W + + KT L +R+P+E K+ L TH +L G K
Sbjct: 136 TKRLGICRWKDSVLEVEKT---LMKRVPRE-KWSL-----THHRLI-----FFGRYHCKA 181
Query: 264 SAGNL--CPLLNYCEKSNK 280
+ N CPLL+ C + K
Sbjct: 182 ANPNCPECPLLDLCREGQK 200
>gi|355640219|ref|ZP_09051638.1| endonuclease III [Pseudomonas sp. 2_1_26]
gi|354831431|gb|EHF15446.1| endonuclease III [Pseudomonas sp. 2_1_26]
Length = 212
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + + I+ GL +KA +
Sbjct: 33 LIAVILSAQATDVGVNKATARLYPVANTPEAIHALGVEGLSEYIKTIGLYNSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + +L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILIEKHGG---------QVPDNREDLEALPGVGRKTANVVLNTAFRQLAMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
++ G P K L + ++ +P+E D + L HG+ +C +
Sbjct: 144 VANRTGIAP-----GKNVLEVEKKLLKFVPREYLLDAHHWLILHGRYVC---------KA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPQCGS-CRIEDLCEYKHKT 209
>gi|324516785|gb|ADY46633.1| N-glycosylase/DNA lyase [Ascaris suum]
Length = 372
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 109 STFPTWEHVL-------AAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYL 161
S+FP+ E V A +E+ +R G +AA + K L E G+L L L
Sbjct: 162 SSFPSQEIVYDFADLARMATDDAMESKLRESGFG-YRAAYLHRAAKNLHEIGGELWLNEL 220
Query: 162 RGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEISKA 209
+ D K +L + G+GPK C+ + L + D PVDTH+F+I+ A
Sbjct: 221 ANETYDIAKQKLQQLPGVGPKVADCICLMSLGKSDVVPVDTHIFQITAA 269
>gi|321474741|gb|EFX85705.1| hypothetical protein DAPPUDRAFT_313422 [Daphnia pulex]
Length = 347
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 110 TFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEI 169
+FP E LAA++ +E+ +R G +A I+ ++E+ G+ L LR LS E
Sbjct: 169 SFPALES-LAADK--VESRLRTLGFG-YRAKFIQQSAAKIVENGGRDWLMNLRNLSYPEA 224
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQD-DFPVDTHVFEISKAIGWVP 214
K L GIG K C+ + L PVDTHVF+I+KA +VP
Sbjct: 225 KTALMTLPGIGAKVADCICLMSLDHSVAIPVDTHVFQIAKA-SYVP 269
>gi|312862650|ref|ZP_07722890.1| endonuclease III [Streptococcus vestibularis F0396]
gi|322516627|ref|ZP_08069541.1| endonuclease III [Streptococcus vestibularis ATCC 49124]
gi|311101510|gb|EFQ59713.1| endonuclease III [Streptococcus vestibularis F0396]
gi|322124897|gb|EFX96321.1| endonuclease III [Streptococcus vestibularis ATCC 49124]
Length = 214
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 18/205 (8%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
+ + E E E+ LV +LS TT+ K L + +P E + +A +E +R
Sbjct: 20 DAHGELEWETPFQLLVAVILSAQTTDKAVNKVTPGLWARYPEIEDLASANLDDVEMCLRT 79
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL KA KNI+K + L G + + EL G+G KT VL
Sbjct: 80 IGLYKNKA---KNIIKT-----ARAVLMNFDG-QVPKTHKELESLPGVGRKTANVVLAEV 130
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
VDTHV +SK + P A + L ++IPK+ + + G+ +
Sbjct: 131 YGIPSIAVDTHVSRVSKRLNIAPENASVEEIEAELMKKIPKKDWIISHHRMIFFGRY--H 188
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCE 276
C+ K Q CPL +YC+
Sbjct: 189 CLAKNPKCQT-------CPLQSYCK 206
>gi|300723261|ref|YP_003712561.1| endonuclease III [Xenorhabdus nematophila ATCC 19061]
gi|297629778|emb|CBJ90386.1| endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on
5-formyluracil and 5-hydroxymethyluracil [Xenorhabdus
nematophila ATCC 19061]
Length = 210
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T + +L ++ I+ GL TKA
Sbjct: 28 SPFELLISVLLSAQATDVSVNKATAKLYPVANTPQAILNLGVDGLKGYIKTIGLYNTKA- 86
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+N++K +L LE +G + E +A L G+G KT VL VD
Sbjct: 87 --ENVIKTC-----RLLLEKHQG-EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S + P + ++ L + +P E K D + L HG+ CI
Sbjct: 139 THIFRVSNRTQFAP-GKNVDEVEKKLLKVVPAEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE KT
Sbjct: 190 RKPRCGS-CIIEDLCEFEEKT 209
>gi|171742064|ref|ZP_02917871.1| hypothetical protein BIFDEN_01168 [Bifidobacterium dentium ATCC
27678]
gi|171277678|gb|EDT45339.1| endonuclease III [Bifidobacterium dentium ATCC 27678]
Length = 209
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV TVLS TT+ L FP + AA+ + +E+ I G TK KNI
Sbjct: 28 LVATVLSAQTTDKRVNMVTPVLFGRFPGPADLQAADPEQVEDIIHSIGFHRTKT---KNI 84
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
++ LC Y G D ++ EL+ G+G KT VL + FPVDTHV
Sbjct: 85 IRL----SHDLCERY-DGTVPDSME-ELTALPGVGRKTANVVLGNAFDKPGFPVDTHVIR 138
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRI----PKELKFDLNCLLYTHGK 247
++ + W A + + + I P DL+ L HG+
Sbjct: 139 VTGRLHWRSDWASPTPDPVAIEREITACFPPSEWTDLSHRLIMHGR 184
>gi|445378622|ref|ZP_21426835.1| endonuclease III [Streptococcus thermophilus MTCC 5460]
gi|445392830|ref|ZP_21428561.1| endonuclease III [Streptococcus thermophilus MTCC 5461]
gi|444749453|gb|ELW74351.1| endonuclease III [Streptococcus thermophilus MTCC 5461]
gi|444749716|gb|ELW74604.1| endonuclease III [Streptococcus thermophilus MTCC 5460]
Length = 214
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 18/210 (8%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
+ + E E E+ LV +LS TT+ K L + +P E + +A +E +R
Sbjct: 20 DAHGELEWETPFQLLVAVILSAQTTDKAVNKVTPGLWARYPEIEDLASANLDDVEMCLRT 79
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL KA KNI+K + L G + + EL G+G KT VL
Sbjct: 80 IGLYKNKA---KNIIKT-----ARAILMNFDG-QVPKTHKELEGLPGVGRKTANVVLAEV 130
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRN 251
VDTHV +SK + P A + L ++IPK+ + + G+ +
Sbjct: 131 YGIPSIAVDTHVSRVSKRLNIAPENASVEEIEAELMKKIPKKDWIISHHRMIFFGRY--H 188
Query: 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
C+ K Q CPL +YC+ +T
Sbjct: 189 CLAKNPKCQT-------CPLQSYCKYYRET 211
>gi|429214593|ref|ZP_19205756.1| endonuclease III [Pseudomonas sp. M1]
gi|428154879|gb|EKX01429.1| endonuclease III [Pseudomonas sp. M1]
Length = 212
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 27/206 (13%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
+S + L+ +LS T+ KA A L T E + A + I+ GL +KA
Sbjct: 27 DSPFELLIAVILSAQATDVGVNKATAKLYPVANTPEAIYALGVDGLSEYIKTIGLYNSKA 86
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
+ + L+E G + E + +L G+G KT VL +Q V
Sbjct: 87 KNVIETCRILIEKHGS---------KVPENREDLEALPGVGRKTANVVLNTAFRQLAMAV 137
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGKLCRNCIKK 255
DTH+F ++ P K L + ++ +P+E D + L HG+ C
Sbjct: 138 DTHIFRVANRTNIAP-----GKNVLEVERKLLKFVPREYLLDAHHWLILHGRYV--C--- 187
Query: 256 GGNRQRKESAGNLCPLLNYCEKSNKT 281
+ RK G+ C + + CE +KT
Sbjct: 188 ---KARKPQCGS-CRIEDLCEYKHKT 209
>gi|416057155|ref|ZP_11580096.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|348001225|gb|EGY41978.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
Length = 224
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ KA L T + +LA ++ I+ GL +KA
Sbjct: 41 SPFELLIAVILSAQATDKGVNKATDKLFPVANTPQTILALGVDGLKEYIKTIGLFNSKAE 100
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
I + L+E + E +A L G+G KT VL VD
Sbjct: 101 NIIKTCRDLIEKHNG---------DVPEDRAALEALAGVGRKTANVVLNTAFGHPTIAVD 151
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F + G+ P D K L + +P E K D++ L HG+ C+
Sbjct: 152 THIFRVCNRTGFAP-GKDVVKVEEKLIKVVPAEFKVDVHHWLILHGRY--TCV------A 202
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G C + + CE +KT
Sbjct: 203 RKPRCGA-CIIEDLCEYKDKT 222
>gi|306824244|ref|ZP_07457614.1| endonuclease III [Bifidobacterium dentium ATCC 27679]
gi|304552447|gb|EFM40364.1| endonuclease III [Bifidobacterium dentium ATCC 27679]
Length = 209
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV TVLS TT+ L FP + AA+ + +E+ I G TK KNI
Sbjct: 28 LVATVLSAQTTDKRVNMVTPVLFGRFPGPADLQAADPEQVEDIIHSIGFHRTKT---KNI 84
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
++ LC Y G D ++ EL+ G+G KT VL + FPVDTHV
Sbjct: 85 IRL----SHDLCERY-DGTVPDSME-ELTALPGVGRKTANVVLGNAFDKPGFPVDTHVIR 138
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRI----PKELKFDLNCLLYTHGK 247
++ + W A + + + I P DL+ L HG+
Sbjct: 139 VTGRLHWRSDWASPTPDPVAIEREITACFPPSEWTDLSHRLIMHGR 184
>gi|229817097|ref|ZP_04447379.1| hypothetical protein BIFANG_02353 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784886|gb|EEP21000.1| hypothetical protein BIFANG_02353 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 207
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 24/204 (11%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
E+ L L+ TVLS TT+ L +T+P+ + A + +E IR G TK
Sbjct: 22 ETPLQLLIATVLSAQTTDKRVNTVTPELFATYPSCSDLACANPEDVERIIRPLGFYRTKT 81
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
+ + + L + EL+ G+G KT VL FPV
Sbjct: 82 KHLLGLAQVLASRFDG---------EVPSTMDELTSLPGVGRKTANVVLGNAFHIPGFPV 132
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRI----PKELKFDLNCLLYTHGK-LCRNCIK 254
DTHV ++ + W N + + + I P E DL+ L HG+ +C
Sbjct: 133 DTHVMRVTGRLRWRSDWRHANPNPVAVEREITACFPPEQWTDLSHRLILHGRAIC----- 187
Query: 255 KGGNRQRKESAGNLCPLLNYCEKS 278
RK G +CPL + C +
Sbjct: 188 ----HARKPDCG-ICPLADSCPSA 206
>gi|163850028|ref|YP_001638071.1| endonuclease III [Methylobacterium extorquens PA1]
gi|163661633|gb|ABY29000.1| endonuclease III [Methylobacterium extorquens PA1]
Length = 270
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+ + A A L + T + +L ++ + + IR GL TKA + +
Sbjct: 84 LVAVVLSAQATDKSVNLATAPLFTIADTPQKMLDLGEERVRHFIRTIGLFNTKAKNVIAL 143
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G G E +A L G+G KT + VL VDTH+F
Sbjct: 144 SRILLERHG--------GAVPCEAEA-LEVLPGVGTKTASVVLNVAFGVPRIAVDTHIFR 194
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
+S I +AA +K L R+P+ + + + L HG+ +C+
Sbjct: 195 VSNRIPLF-SAATTDKVQAGLEARVPEPFRLNAHHWLILHGRYICK 239
>gi|392533864|ref|ZP_10281001.1| DNA-(apurinic or apyrimidinic site) lyase [Pseudoalteromonas
arctica A 37-1-2]
Length = 210
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 91/224 (40%), Gaps = 32/224 (14%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD N P+ EY S + LV LS T+ KA L T + +L
Sbjct: 14 RDDNPHPVTELEY-----SSPFELLVAVTLSAQATDVGVNKATRKLFPVANTPQAILDLG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
+ + I+ GL +KAA + + + L++ + + E + L G+G
Sbjct: 69 HDTLRDYIKTIGLFNSKAANVYKMCQILVDEHNSI---------VPENREALEALPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISK----AIGWVPTAADRNKTYLHLNQRIPKELKFD 237
KT VL VDTH+F +S A+G A ++ L + +PKE K D
Sbjct: 120 KTANVVLNTAFGWPVIAVDTHIFRVSNRTKLAMGKDVVAVEQK-----LEKVVPKEFKVD 174
Query: 238 LNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
++ L HG+ C+ RK G+ C + + CE KT
Sbjct: 175 VHHWLILHGRY--TCV------ARKPKCGS-CIIEDLCEFKEKT 209
>gi|82703817|ref|YP_413383.1| endonuclease III [Nitrosospira multiformis ATCC 25196]
gi|82411882|gb|ABB75991.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrosospira multiformis
ATCC 25196]
Length = 215
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E S + LV LS T+ + A L T E +LA ++ + I+ GL
Sbjct: 23 ELEYNSPFELLVAVALSAQATDKSVNLATRKLFPKANTPEAILAMGEEALREYIKSIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA I + L++ G + E + +L + G+G KT +L Q
Sbjct: 83 KTKARNILATCRILIDQYGG---------KVPETREQLEKLPGVGRKTANVLLNTAFGQP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK 247
VDTH+F ++ G R K L + + +PKE + D + L HG+
Sbjct: 134 TIAVDTHIFRVANRTGIA-----RGKNVLEVESKLLKCVPKEFRQDAHHWLILHGR 184
>gi|405972859|gb|EKC37606.1| N-glycosylase/DNA lyase [Crassostrea gigas]
Length = 364
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 110 TFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEI 169
+FPT + + +E+ +R G +A I + +LE G+ L LR + E
Sbjct: 183 SFPT---IFELSEDGVESELRNLGFG-YRAKYINKSAQQILEKGGETWLRALREIPYAEA 238
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEISKAIGWVPT 215
K EL G+G K CV + L + D PVDTHV++I+ A G++P+
Sbjct: 239 KKELLALNGVGAKVADCVCLMSLDKTDALPVDTHVWQIA-ARGYMPS 284
>gi|126667563|ref|ZP_01738533.1| endonuclease III [Marinobacter sp. ELB17]
gi|126627989|gb|EAZ98616.1| endonuclease III [Marinobacter sp. ELB17]
Length = 212
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 87/223 (39%), Gaps = 32/223 (14%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
R++N P+ Y S + L+ +LS T+ KA L S T E + A
Sbjct: 14 REENPKPVTELNYS-----SNFELLIAVILSAQATDVGVNKATNKLYSVANTPEAIFALG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
++ I+ GL +KA + + L++ + + EL G+G
Sbjct: 69 VDGLKEYIKTIGLFNSKAGNVIKTCRALIDRHAS---------QVPRTREELEALPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQR----IPKELKFD 237
KT VL Q VDTH+F +S G P K L + +R +P+E D
Sbjct: 120 KTANVVLNTAFGQIAMAVDTHIFRVSNRTGIAP-----GKNVLEVEKRLIRLVPQEFLLD 174
Query: 238 LNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNK 280
+ L HG+ CI RK G C + + CE +K
Sbjct: 175 AHHWLILHGRY--TCI------ARKPRCG-ACLIEDLCEFKDK 208
>gi|15598691|ref|NP_252185.1| endonuclease III [Pseudomonas aeruginosa PAO1]
gi|107103025|ref|ZP_01366943.1| hypothetical protein PaerPA_01004094 [Pseudomonas aeruginosa PACS2]
gi|116051512|ref|YP_789652.1| endonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
gi|218890260|ref|YP_002439124.1| endonuclease III [Pseudomonas aeruginosa LESB58]
gi|254236439|ref|ZP_04929762.1| endonuclease III [Pseudomonas aeruginosa C3719]
gi|254242175|ref|ZP_04935497.1| endonuclease III [Pseudomonas aeruginosa 2192]
gi|296387984|ref|ZP_06877459.1| endonuclease III [Pseudomonas aeruginosa PAb1]
gi|313108859|ref|ZP_07794842.1| endonuclease III [Pseudomonas aeruginosa 39016]
gi|386057540|ref|YP_005974062.1| endonuclease III [Pseudomonas aeruginosa M18]
gi|386067541|ref|YP_005982845.1| endonuclease III [Pseudomonas aeruginosa NCGM2.S1]
gi|392982768|ref|YP_006481355.1| endonuclease III [Pseudomonas aeruginosa DK2]
gi|416867830|ref|ZP_11916116.1| endonuclease III [Pseudomonas aeruginosa 138244]
gi|416875861|ref|ZP_11918934.1| endonuclease III [Pseudomonas aeruginosa 152504]
gi|418584272|ref|ZP_13148336.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P1]
gi|418591842|ref|ZP_13155728.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P2]
gi|419754900|ref|ZP_14281258.1| endonuclease III [Pseudomonas aeruginosa PADK2_CF510]
gi|420138609|ref|ZP_14646508.1| endonuclease III [Pseudomonas aeruginosa CIG1]
gi|421152679|ref|ZP_15612257.1| endonuclease III [Pseudomonas aeruginosa ATCC 14886]
gi|421158996|ref|ZP_15618178.1| endonuclease III [Pseudomonas aeruginosa ATCC 25324]
gi|421166302|ref|ZP_15624564.1| endonuclease III [Pseudomonas aeruginosa ATCC 700888]
gi|421173249|ref|ZP_15631001.1| endonuclease III [Pseudomonas aeruginosa CI27]
gi|421179340|ref|ZP_15636932.1| endonuclease III [Pseudomonas aeruginosa E2]
gi|421518036|ref|ZP_15964710.1| endonuclease III [Pseudomonas aeruginosa PAO579]
gi|424939679|ref|ZP_18355442.1| endonuclease III [Pseudomonas aeruginosa NCMG1179]
gi|451987559|ref|ZP_21935715.1| Endonuclease III [Pseudomonas aeruginosa 18A]
gi|9949641|gb|AAG06883.1|AE004770_8 endonuclease III [Pseudomonas aeruginosa PAO1]
gi|115586733|gb|ABJ12748.1| endonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
gi|126168370|gb|EAZ53881.1| endonuclease III [Pseudomonas aeruginosa C3719]
gi|126195553|gb|EAZ59616.1| endonuclease III [Pseudomonas aeruginosa 2192]
gi|218770483|emb|CAW26248.1| endonuclease III [Pseudomonas aeruginosa LESB58]
gi|310881344|gb|EFQ39938.1| endonuclease III [Pseudomonas aeruginosa 39016]
gi|334833542|gb|EGM12621.1| endonuclease III [Pseudomonas aeruginosa 138244]
gi|334841489|gb|EGM20117.1| endonuclease III [Pseudomonas aeruginosa 152504]
gi|346056125|dbj|GAA16008.1| endonuclease III [Pseudomonas aeruginosa NCMG1179]
gi|347303846|gb|AEO73960.1| endonuclease III [Pseudomonas aeruginosa M18]
gi|348036100|dbj|BAK91460.1| endonuclease III [Pseudomonas aeruginosa NCGM2.S1]
gi|375046119|gb|EHS38687.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P1]
gi|375049324|gb|EHS41825.1| endonuclease III [Pseudomonas aeruginosa MPAO1/P2]
gi|384398718|gb|EIE45123.1| endonuclease III [Pseudomonas aeruginosa PADK2_CF510]
gi|392318273|gb|AFM63653.1| endonuclease III [Pseudomonas aeruginosa DK2]
gi|403248618|gb|EJY62175.1| endonuclease III [Pseudomonas aeruginosa CIG1]
gi|404347518|gb|EJZ73867.1| endonuclease III [Pseudomonas aeruginosa PAO579]
gi|404524991|gb|EKA35279.1| endonuclease III [Pseudomonas aeruginosa ATCC 14886]
gi|404536198|gb|EKA45844.1| endonuclease III [Pseudomonas aeruginosa CI27]
gi|404538732|gb|EKA48254.1| endonuclease III [Pseudomonas aeruginosa ATCC 700888]
gi|404547208|gb|EKA56220.1| endonuclease III [Pseudomonas aeruginosa E2]
gi|404548847|gb|EKA57786.1| endonuclease III [Pseudomonas aeruginosa ATCC 25324]
gi|451754792|emb|CCQ88238.1| Endonuclease III [Pseudomonas aeruginosa 18A]
gi|453047484|gb|EME95198.1| endonuclease III [Pseudomonas aeruginosa PA21_ST175]
Length = 212
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA A L T E + A + + I+ GL +KA +
Sbjct: 33 LIAVILSAQATDVGVNKATARLYPVANTPEAIHALGVEGLSEYIKTIGLYNSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + + + +L G+G KT VL +Q VDTH+F
Sbjct: 93 CRILIEKHGG---------QVPDNREDLEALPGVGRKTANVVLNTAFRQLAMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
++ G P K L + ++ +P+E D + L HG+ +C +
Sbjct: 144 VANRTGIAP-----GKNVLEVEKKLLKFVPREYLLDAHHWLILHGRYVC---------KA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPQCGS-CRIEDLCEYKHKT 209
>gi|118497626|ref|YP_898676.1| endonuclease III [Francisella novicida U112]
gi|195536327|ref|ZP_03079334.1| endonuclease III [Francisella novicida FTE]
gi|254374441|ref|ZP_04989923.1| endonuclease III [Francisella novicida GA99-3548]
gi|118423532|gb|ABK89922.1| endonuclease III [Francisella novicida U112]
gi|151572161|gb|EDN37815.1| endonuclease III [Francisella novicida GA99-3548]
gi|194372804|gb|EDX27515.1| endonuclease III [Francisella tularensis subsp. novicida FTE]
Length = 212
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E S + L+ +LS T+ KA L T E + A ++ + I+ GL
Sbjct: 23 ELEYTSNFELLIAVILSAQATDVGVNKATKVLFKVANTPEQIYALGEQKLAEYIKSIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA + K L+E G + + +L G+G KT VL +
Sbjct: 83 KTKAKNVIATCKDLIEKFGSIVPDNFD---------DLISLAGVGRKTANVVLNTAFGKP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLH--LNQRIPKELKFDLNCLLYTHGKL----- 248
VDTH+F ++ I P A +N + L + IPKE D + + HG+
Sbjct: 134 TMAVDTHIFRLANRI---PLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICTAQ 190
Query: 249 ---CRNCI 253
CRNCI
Sbjct: 191 RPKCRNCI 198
>gi|373107960|ref|ZP_09522251.1| endonuclease III [Stomatobaculum longum]
gi|371650126|gb|EHO15594.1| endonuclease III [Stomatobaculum longum]
Length = 212
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 74/173 (42%), Gaps = 12/173 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+LS T+A + L +P E + AA Q+ IE I G KA +N+
Sbjct: 36 LLATILSAQCTDARVNQVTKVLYQHYPRLEDIAAASQEEIEREIYTTGFYHNKA---RNL 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
C ++ L G DE++A L+ G+G KT +L + VDTHV
Sbjct: 93 RAC-----AQVLLLRFDGTVPDEMEALLT-LPGVGRKTANLILGEIYGKPSIVVDTHVKR 146
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
+S+ +G V TA D K L +P+ N L G+ C K N
Sbjct: 147 VSRRLGLV-TATDPTKVEAELKTVLPESFWILWNTRLMALGR--TYCTAKAPN 196
>gi|421263112|ref|ZP_15714184.1| endonuclease III [Pasteurella multocida subsp. multocida str.
P52VAC]
gi|401690060|gb|EJS85390.1| endonuclease III [Pasteurella multocida subsp. multocida str.
P52VAC]
Length = 210
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 81/201 (40%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ KA L T + +L ++ I+ GL +KA
Sbjct: 28 SPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLGLDGLKEYIKTIGLYNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
I + L+E I E ++ L G+G KT VL VD
Sbjct: 88 NIIKTCRDLIEKHNG---------EIPENRSALEALAGVGRKTANVVLNTAFGHPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S G+ P D K L + +P E K D++ L HG+ CI
Sbjct: 139 THIFRVSNRTGFAP-GKDVVKVEEKLLKVVPDEFKVDVHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE KT
Sbjct: 190 RKPRCGS-CLIEDLCEFKEKT 209
>gi|123442259|ref|YP_001006240.1| endonuclease III [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|332161845|ref|YP_004298422.1| endonuclease III [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|386308474|ref|YP_006004530.1| endonuclease III [Yersinia enterocolitica subsp. palearctica Y11]
gi|418242979|ref|ZP_12869477.1| endonuclease III [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|420258595|ref|ZP_14761327.1| endonuclease III [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|433549631|ref|ZP_20505675.1| Endonuclease III [Yersinia enterocolitica IP 10393]
gi|122089220|emb|CAL12066.1| endonuclease III [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|318605652|emb|CBY27150.1| endonuclease III [Yersinia enterocolitica subsp. palearctica Y11]
gi|325666075|gb|ADZ42719.1| endonuclease III [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|351777598|gb|EHB19802.1| endonuclease III [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|404513940|gb|EKA27743.1| endonuclease III [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|431788766|emb|CCO68715.1| Endonuclease III [Yersinia enterocolitica IP 10393]
Length = 213
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T + +L +++ I+ GL TKA +N+
Sbjct: 33 LISVLLSAQATDVSVNKATAKLYPVANTPQAILDLGVDGLKSYIKTIGLFNTKA---ENV 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K ++ LE G + E +A L G+G KT VL VDTH+F
Sbjct: 90 IKTC-----RILLEKHHG-EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ G+ P ++ ++ L + +P E K D + L HG+ CI RK
Sbjct: 144 VCNRTGFAP-GSNVDQVEAKLLKVVPAEFKLDCHHWLILHGRY--TCI------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE K
Sbjct: 195 GS-CIIEDLCEFKEKV 209
>gi|83719698|ref|YP_441524.1| endonuclease III [Burkholderia thailandensis E264]
gi|167580297|ref|ZP_02373171.1| endonuclease III [Burkholderia thailandensis TXDOH]
gi|167618419|ref|ZP_02387050.1| endonuclease III [Burkholderia thailandensis Bt4]
gi|257139788|ref|ZP_05588050.1| endonuclease III [Burkholderia thailandensis E264]
gi|83653523|gb|ABC37586.1| endonuclease III [Burkholderia thailandensis E264]
Length = 214
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 10/179 (5%)
Query: 69 LDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENA 128
L+ + E E + + L+ +LS T+ + KA + T + ++A ++ + +
Sbjct: 16 LNPHPTTELEYTTPFELLIAVMLSAQATDVSVNKAMRKMFPVANTPKKIVALGEEGVADY 75
Query: 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
I+ GL TKA KN++ + KL LE G + + L G+G KT VL
Sbjct: 76 IKTIGLFRTKA---KNVV-----AASKLLLERYDG-EVPADREALESLPGVGRKTANVVL 126
Query: 189 MFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
Q VDTH+F ++ G P D L + PKE D + L HG+
Sbjct: 127 NTAFGQPTIAVDTHIFRVANRTGLAP-GKDVRAVEAALEKFTPKEFLHDAHHWLILHGR 184
>gi|218528631|ref|YP_002419447.1| endonuclease III [Methylobacterium extorquens CM4]
gi|218520934|gb|ACK81519.1| endonuclease III [Methylobacterium extorquens CM4]
Length = 233
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+ + A A L + T + +L ++ + + IR GL TKA + +
Sbjct: 47 LVAVVLSAQATDKSVNLATAPLFAIADTPQKMLDLGEERVRHFIRTIGLFNTKAKNVIAL 106
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G G E +A L G+G KT + VL VDTH+F
Sbjct: 107 SRILLERHG--------GAVPCEAEA-LEVLPGVGTKTASVVLNVAFGVPRIAVDTHIFR 157
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
+S I +AA +K L R+P+ + + + L HG+ +C+
Sbjct: 158 VSNRIPLF-SAATTDKVQAGLEARVPEPFRLNAHHWLILHGRYICK 202
>gi|349687436|ref|ZP_08898578.1| endonuclease III [Gluconacetobacter oboediens 174Bp2]
Length = 223
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 12/163 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A+ +A +L PT ++ ++ + IR GL TKA + +
Sbjct: 33 LVAVVLSAQATDASVNRATKALFRDAPTPRAMVELGEEKVGAHIRTIGLWRTKARNVVAL 92
Query: 146 LKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
+ LLE GK+ + +A L G+G KT V+ + VDTH+F
Sbjct: 93 SQQLLERFDGKVPYD----------RAALESLPGVGRKTANVVMNVAFGDNTMAVDTHIF 142
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I G P A R L +RIP ++ + L HG+
Sbjct: 143 RIGNRTGLAPGATPR-AVEDQLVRRIPADMLRPAHHWLILHGR 184
>gi|339489054|ref|YP_004703582.1| endonuclease III [Pseudomonas putida S16]
gi|431804103|ref|YP_007231006.1| endonuclease III [Pseudomonas putida HB3267]
gi|338839897|gb|AEJ14702.1| endonuclease III [Pseudomonas putida S16]
gi|430794868|gb|AGA75063.1| endonuclease III [Pseudomonas putida HB3267]
Length = 212
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 27/200 (13%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS +T+ KA A L T E + A + + I+ GL +KA +
Sbjct: 33 LVAVTLSAQSTDVGVNKATARLFPVANTPEAIYALGVEGLSEYIKTIGLYNSKAKNVIEA 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E + + + L G+G KT VL +Q VDTH+F
Sbjct: 93 CRLLIERHDS---------QVPQTREALEALPGVGRKTANVVLNTAFRQPTMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGKLCRNCIKKGGNRQR 261
+S G P KT L + ++ +PK+ D + L HG+ C + R
Sbjct: 144 VSNRTGIAP-----GKTVLEVEKKLIKFVPKDYLLDAHHWLILHGRYV--C------QAR 190
Query: 262 KESAGNLCPLLNYCEKSNKT 281
K G+ C + + CE +KT
Sbjct: 191 KPRCGS-CRIEDLCEYKHKT 209
>gi|315634432|ref|ZP_07889719.1| endonuclease III [Aggregatibacter segnis ATCC 33393]
gi|315477022|gb|EFU67767.1| endonuclease III [Aggregatibacter segnis ATCC 33393]
Length = 211
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ KA L T + +LA ++ I+ GL +KA
Sbjct: 28 SPFELLIAVILSAQATDKGVNKATDKLFPVANTPQAILALGVDGLKEYIKTIGLFNSKA- 86
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+NI+K + +E G + E + L G+G KT VL VD
Sbjct: 87 --ENIIKTCRD-----LIEKYNG-EVPEDREALEALAGVGRKTANVVLNTAFGHPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F + G+ P D K L + +P E K D++ L HG+ C+
Sbjct: 139 THIFRVCNRTGFAP-GKDVVKVEEKLIKVVPAEFKVDVHHWLILHGRY--TCV------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G C + + CE NKT
Sbjct: 190 RKPRCG-ACMIEDLCEYKNKT 209
>gi|206890497|ref|YP_002248535.1| endonuclease III [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742435|gb|ACI21492.1| endonuclease III [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 210
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 86/200 (43%), Gaps = 22/200 (11%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S LD +V T+LS TT+ N K +L + T + +EN I+ KA
Sbjct: 29 SALDLVVATILSAQTTDINVNKVTENLFKKYQTADDYANVSLTELENDIKSINFYKNKAK 88
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL--MFHLQQDDFP 198
IKN+ K L+E G + + EL G+G KT VL +F + +
Sbjct: 89 YIKNLAKKLIEE--------FNG-QVPKTMNELVTLPGVGRKTANIVLWNVFGINE-GIA 138
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
VDTHV ISK +G + D +K L + P++ L+ LL G+ C K N
Sbjct: 139 VDTHVKRISKLLG-LTENTDPDKIEQDLMEITPRKYWGKLSHLLIMLGREI--CKAKAPN 195
Query: 259 RQRKESAGNLCPLLNYCEKS 278
+ +CPL + C S
Sbjct: 196 HK-------ICPLSDICPSS 208
>gi|50546697|ref|XP_500818.1| YALI0B12870p [Yarrowia lipolytica]
gi|49646684|emb|CAG83069.1| YALI0B12870p [Yarrowia lipolytica CLIB122]
Length = 403
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 126 ENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVA 185
E +R GL K L + G+ L LR S DE K+ + F G+GPK
Sbjct: 182 EPILRELGLGYRAKYISKTAEMLLTKPGGEQFLHELRDASFDEAKSSIMEFLGVGPKVAD 241
Query: 186 CVLMFHL-QQDDFPVDTHVFEISK 208
CV +F L + D PVDTHV++I++
Sbjct: 242 CVCLFSLDKHDTVPVDTHVWQIAQ 265
>gi|416051845|ref|ZP_11577868.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347992657|gb|EGY34042.1| endonuclease III [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 211
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 80/201 (39%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ KA L T + +LA ++ I+ GL +KA
Sbjct: 28 SPFELLIAVILSAQATDKGVNKATDKLFPVANTPQAILALGVDGLKGYIKTIGLFNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
I + L+E + E +A L G+G KT VL VD
Sbjct: 88 NIIKTCRDLIEKHNG---------EVPEDRAALEALAGVGRKTANVVLNTAFGHPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F + G+ P D K L + +P E K D++ L HG+ C+
Sbjct: 139 THIFRVCNRTGFAP-GKDVVKVEEKLIKVVPAEFKVDVHHWLILHGRY--TCV------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G C + + CE KT
Sbjct: 190 RKPRCG-ACIIEDLCEYKEKT 209
>gi|417960104|ref|ZP_12602758.1| Endonuclease III [Candidatus Arthromitus sp. SFB-1]
gi|380331776|gb|EIA22753.1| Endonuclease III [Candidatus Arthromitus sp. SFB-1]
Length = 209
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 19/201 (9%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E +S L+ TVLS TT+ + +L +P E L ++K +++ I+ GL
Sbjct: 22 ELEYKSPFQLLIATVLSAQTTDKKVNEVTKNLFIEYPRLEDFLKLDEKELKDKIKSIGLY 81
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
K+ I N+ + L E + + EL G+G KT V+
Sbjct: 82 RMKSKNIINLCRILEERFDS---------EVPRTRDELITLPGVGRKTANVVISNCFGVQ 132
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
F VD HVF +S IG + + KT L L + I + L + + HG+ C C
Sbjct: 133 AFAVDVHVFRVSNRIG-IANSPTPEKTELDLMKNIDENLWTICHHTIIFHGRRC--CT-- 187
Query: 256 GGNRQRKESAGNLCPLLNYCE 276
RK + G C + YC+
Sbjct: 188 ----SRKPNCGE-CKISEYCK 203
>gi|239815553|ref|YP_002944463.1| endonuclease III [Variovorax paradoxus S110]
gi|239802130|gb|ACS19197.1| endonuclease III [Variovorax paradoxus S110]
Length = 215
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 10/172 (5%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E + + L +LS T+ KA L T + +L + +E+ I+ GL
Sbjct: 23 ELEYATPFELLAAVLLSAQATDVGVNKATRKLFPVANTPQAILRLGVEGLEDYIKTIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
+KA + + L+E G + +AEL G+G KT VL +
Sbjct: 83 RSKAKHLIETCRILVEKHGG---------EVPRTRAELEALPGVGRKTANVVLNVAFGEA 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
VDTH+F +S G P + L L +R+P E + + L HG+
Sbjct: 134 TIAVDTHIFRVSNRTGLAPGKTPL-EVELKLEKRVPFEFRLHAHHWLILHGR 184
>gi|27375800|ref|NP_767329.1| endonuclease III [Bradyrhizobium japonicum USDA 110]
gi|27348938|dbj|BAC45954.1| endonuclease III [Bradyrhizobium japonicum USDA 110]
Length = 260
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 74/178 (41%), Gaps = 12/178 (6%)
Query: 72 NEYDEGEEESV--LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
N +GE E V LV VLS T+A KA +L T + +L ++ + I
Sbjct: 67 NPEPKGELEHVNPFTLLVAVVLSAQATDAGVNKATRALFEVADTPQKMLDLGEESLREYI 126
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
+ GL TKA KN++ K+ E+ G + +AE+ G G KT VL
Sbjct: 127 KTIGLYRTKA---KNVIAL----SAKVLSEF--GGEVPRTRAEIESLPGAGRKTANVVLN 177
Query: 190 FHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ VDTHVF + G P + L L + IP E + L HG+
Sbjct: 178 MAFGEHTMAVDTHVFRVGNRTGLAPGKTPL-EVELGLEKVIPAEFMLHAHHWLILHGR 234
>gi|308049952|ref|YP_003913518.1| DNA-(apurinic or apyrimidinic site) lyase [Ferrimonas balearica DSM
9799]
gi|307632142|gb|ADN76444.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Ferrimonas balearica DSM 9799]
Length = 213
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS T+ + KA L T + +L + +++ I+ GL TKA +
Sbjct: 33 LVAVALSAQATDVSVNKATRKLFPVANTPQAMLDLGAEGVKSYIKTIGLYNTKAENVIKA 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G + E +A L + G+G KT VL VDTH+F
Sbjct: 93 ARILVEQHGG---------EVPEDRAALEKLPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+S + P + ++ L + +P E K D++ L HG+
Sbjct: 144 VSNRTKFAP-GKNVDEVEQKLLKVVPAEFKVDVHHWLILHGR 184
>gi|240948721|ref|ZP_04753093.1| endonuclease III [Actinobacillus minor NM305]
gi|257464497|ref|ZP_05628868.1| endonuclease III [Actinobacillus minor 202]
gi|240296937|gb|EER47515.1| endonuclease III [Actinobacillus minor NM305]
gi|257450157|gb|EEV24200.1| endonuclease III [Actinobacillus minor 202]
Length = 211
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ KA L + T + +L + ++ I+ GL +KA +NI
Sbjct: 33 LIAVILSAQATDKGVNKATEKLFAVANTPQAILDLGVEGLKEYIKTIGLFNSKA---ENI 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K + +E +G + E + L G+G KT VL VDTH+F
Sbjct: 90 IKTCRD-----LIEKHQG-QVPENREALEALAGVGRKTANVVLNTAFGHPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S G+ P D K L + +P E K D++ L HG+ CI RK
Sbjct: 144 VSNRTGFAP-GKDVVKVEEKLLKVVPDEFKVDVHHWLILHGRY--TCI------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE KT
Sbjct: 195 GS-CIIEDLCEYKEKT 209
>gi|398355789|ref|YP_006401253.1| endonuclease III [Sinorhizobium fredii USDA 257]
gi|390131115|gb|AFL54496.1| endonuclease III [Sinorhizobium fredii USDA 257]
Length = 275
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 79/188 (42%), Gaps = 20/188 (10%)
Query: 76 EGEEESV--LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
+GE E V LV LS T+A KA L + T E +LA ++ + +AI+ G
Sbjct: 68 KGELEHVNAFTLLVAVALSAQATDAGVNKATRPLFAVADTPEKMLALGEEKLRDAIKTIG 127
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L KA + + + LL G + + + EL G+G KT VL
Sbjct: 128 LYRNKATNVIALSEKLLADFGS---------EVPKTREELMTLPGVGRKTANVVLQMAFG 178
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL----- 248
Q VDTH+F I+ I P ++ +L + IP++ + + L HG+
Sbjct: 179 QSTIAVDTHLFRIANRIRLAPGKTP-DEVEANLMRVIPEKYLYHAHHWLILHGRYVCKAR 237
Query: 249 ---CRNCI 253
C CI
Sbjct: 238 RPECERCI 245
>gi|150391360|ref|YP_001321409.1| endonuclease III [Alkaliphilus metalliredigens QYMF]
gi|149951222|gb|ABR49750.1| endonuclease III [Alkaliphilus metalliredigens QYMF]
Length = 216
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 23/208 (11%)
Query: 72 NEYDEGEEE----SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIEN 127
N Y E E + + L+ T+L+ T+ + L +PT E +L + +
Sbjct: 20 NMYPNAESELNFRNPFELLISTILAAQCTDKRVNQVTKPLFEKYPTPERILTLTEVELGQ 79
Query: 128 AIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACV 187
I+ G K+ I L+E G + E + L G+G KT V
Sbjct: 80 WIKSCGFYNMKSKNILATCHLLMEKHGG---------EVPEEREALMALPGVGRKTANVV 130
Query: 188 LMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ QD VDTHVF +S +G + + + + T L + IPK + D + + HG+
Sbjct: 131 ISNVFGQDAIAVDTHVFRVSNRLG-LAHSDNVDDTEQDLMKSIPKSMWSDAHHWIILHGR 189
Query: 248 LCRNCIKKGGNRQRKESAGNLCPLLNYC 275
R C + + CPL YC
Sbjct: 190 --RIC-------KARRPLCEECPLTTYC 208
>gi|395447558|ref|YP_006387811.1| endonuclease III [Pseudomonas putida ND6]
gi|397694592|ref|YP_006532473.1| endonuclease III [Pseudomonas putida DOT-T1E]
gi|421524246|ref|ZP_15970871.1| endonuclease III [Pseudomonas putida LS46]
gi|388561555|gb|AFK70696.1| endonuclease III [Pseudomonas putida ND6]
gi|397331322|gb|AFO47681.1| endonuclease III [Pseudomonas putida DOT-T1E]
gi|402752057|gb|EJX12566.1| endonuclease III [Pseudomonas putida LS46]
Length = 212
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS +T+ KA A L T E + A + + I+ GL +KA +
Sbjct: 33 LVAVTLSAQSTDVGVNKATARLFPVANTPEAIYALGVEGLSEYIKTIGLYNSKAKNVIEA 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E + + + L G+G KT VL +Q VDTH+F
Sbjct: 93 CRLLIERHDS---------QVPQTREALEALPGVGRKTANVVLNTAFRQPAMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P KT L + ++ +PK+ D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKTVLEVEKKLVKFVPKDYLLDAHHWLILHGRYVC---------QA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPRCGS-CRIEDLCEYKHKT 209
>gi|349700393|ref|ZP_08902022.1| endonuclease III [Gluconacetobacter europaeus LMG 18494]
Length = 225
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 12/163 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A+ +A +L PT + ++ ++ + IR GL TKA + +
Sbjct: 33 LVAVVLSAQATDASVNRATKALFRDAPTPQAMVELGEEKVGAHIRTIGLWRTKARNVVAL 92
Query: 146 LKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
+ LLE GK+ + +A L G+G KT V+ VDTH+F
Sbjct: 93 SQQLLERFDGKVPYD----------RAALESLPGVGRKTANVVMNVAFGDSTMAVDTHIF 142
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I G P A R L +RIP ++ + L HG+
Sbjct: 143 RIGNRTGLAPGATPR-AVEDQLVRRIPADMLRPAHHWLILHGR 184
>gi|429092186|ref|ZP_19154830.1| Endonuclease III [Cronobacter dublinensis 1210]
gi|426743155|emb|CCJ80943.1| Endonuclease III [Cronobacter dublinensis 1210]
Length = 211
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T + +LA ++ I+ GL +KA
Sbjct: 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPQAMLALGVDGVKEYIKTIGLFNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + L+E G + E +A L G+G KT VL VD
Sbjct: 88 NVIKTCRILIEQHGG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S + P + L + +P E K D + L HG+ CI
Sbjct: 139 THIFRVSNRTKFAP-GKNVEAVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE ++K
Sbjct: 190 RKPRCGS-CIIEDLCEYADKV 209
>gi|26987828|ref|NP_743253.1| endonuclease III [Pseudomonas putida KT2440]
gi|24982528|gb|AAN66717.1|AE016300_2 endonuclease III [Pseudomonas putida KT2440]
Length = 212
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS +T+ KA A L T E + A + + I+ GL +KA +
Sbjct: 33 LVAVTLSAQSTDVGVNKATARLFPVANTPEAIYALGVEGLSEYIKTIGLYNSKAKNVIEA 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E + + + L G+G KT VL +Q VDTH+F
Sbjct: 93 CRLLIERHDS---------QVPQTREALEALPGVGRKTANVVLNTAFRQPAMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P KT L + ++ +PK+ D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKTVLEVEKKLLKFVPKDYLLDAHHWLILHGRYVC---------QA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPRCGS-CRIEDLCEYKHKT 209
>gi|28212004|ref|NP_782948.1| 8-oxoguanine DNA glycosylase [Clostridium tetani E88]
gi|28204447|gb|AAO36885.1| 8-oxoguanine DNA glycosylase [Clostridium tetani E88]
Length = 311
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 111 FPTWEHVLAAEQKCIE---NAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSID 167
FP+ E + A + +E R + T + +NI LE + + Y++ L D
Sbjct: 167 FPSIEKLYNASIEEVEECGTGFRSKYIVDTVSKIYENITTDSLEYNEQFDINYIKTLQDD 226
Query: 168 EIKAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHV 203
E + L F+GIGPK C+++F + +D FPVD V
Sbjct: 227 ECHSALQNFKGIGPKVADCIMLFSMGKDSAFPVDVWV 263
>gi|336324330|ref|YP_004604297.1| DNA-(apurinic or apyrimidinic site) lyase [Flexistipes sinusarabici
DSM 4947]
gi|336107911|gb|AEI15729.1| DNA-(apurinic or apyrimidinic site) lyase [Flexistipes sinusarabici
DSM 4947]
Length = 227
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T++S T ++ +LKA SL ++ + I NAI G KA IK+I
Sbjct: 40 LISTIISLRTKDSVTLKASESLFELAAEPVKMMNLSEDEIINAIYPAGFYRRKAVTIKDI 99
Query: 146 LKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
K ++E GK+ + + LS+ +G+G KT VL+ + D VDTHV
Sbjct: 100 CKDIVERFDGKVPADLDKLLSL----------KGVGRKTANLVLVEGFEMDAVCVDTHVH 149
Query: 205 EISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG-KLCR 250
I G+V T ++T + L + +P + N +L ++G K+C+
Sbjct: 150 RICNRAGFVKTKTP-DETEMRLREILPVKYWKKWNEMLVSYGQKVCK 195
>gi|436837987|ref|YP_007323203.1| endonuclease III [Fibrella aestuarina BUZ 2]
gi|384069400|emb|CCH02610.1| endonuclease III [Fibrella aestuarina BUZ 2]
Length = 218
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 16/193 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS T+ + +L + FP E + AA + + + IR KA + +
Sbjct: 34 LVAVILSAQCTDKRINQISPALFARFPEPESLAAASVEEVFSYIRSVSYPNNKAKHLVGM 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+ G I AEL R G+G KT ++ Q VDTHVF
Sbjct: 94 ARLLMSEFGG---------EIPATVAELQRLPGVGRKTANVIVSVVYNQPAMAVDTHVFR 144
Query: 206 ISKAIGWVP-TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKES 264
+S +G VP TA L IP L + L HG+ CI R K +
Sbjct: 145 VSHRLGLVPRTATTPLAVEKSLMAHIPTALVPRFHHWLILHGRYV--CIA----RSPKCA 198
Query: 265 AGNLCPLLNYCEK 277
L P+ Y EK
Sbjct: 199 ECALKPVCKYYEK 211
>gi|85000285|ref|XP_954861.1| endonuclease III [Theileria annulata strain Ankara]
gi|65303007|emb|CAI75385.1| endonuclease III, putative [Theileria annulata]
Length = 377
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 62 RDKNSVPLDMNE----YDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHV 117
R+K P+D+ D GE LV +LS T + + +LK T +++
Sbjct: 209 RNKEIAPVDLYGCHCVADPGENFE-FQTLVGCMLSSQTKDEITAATMKNLKKRGLTLDNI 267
Query: 118 LAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFR 177
+ +++ +++ I G TKA IK + + L E G + K EL
Sbjct: 268 IKMDEEELDSIISKVGFHKTKAKNIKKVAQILKEQYGG---------KVPSNKKELESLP 318
Query: 178 GIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKEL 234
GIGPK +L D VD HV I+ +GWV T +T L L + +PK L
Sbjct: 319 GIGPKMANLILQVAYNMVDGVAVDIHVHRITNRLGWVKTKTPE-ETSLKLQELLPKYL 375
>gi|398914659|ref|ZP_10656980.1| endonuclease III [Pseudomonas sp. GM49]
gi|398177798|gb|EJM65464.1| endonuclease III [Pseudomonas sp. GM49]
Length = 212
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 23/203 (11%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASL--KSTFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
S + L+ +LS +T+ KA A L + P H L E + I+ GL +K
Sbjct: 28 SAFELLIAVILSAQSTDVGVNKATAKLFPVANTPAAIHALGVEG--LSEYIKTIGLYNSK 85
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A KN+++ +L +E G + + + EL G+G KT VL +Q
Sbjct: 86 A---KNVIETC-----RLLVERHAG-EVPQTREELEALPGVGRKTANVVLNTAFRQLTMA 136
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
VDTH+F +S G P + + L + +PKE D + L HG+ C+
Sbjct: 137 VDTHIFRVSNRTGIAP-GKNVVEVEKKLMKFVPKEYLLDSHHWLILHGRYV--CL----- 188
Query: 259 RQRKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 189 -ARKPRCGS-CRIEDLCEYKHKT 209
>gi|333927039|ref|YP_004500618.1| endonuclease III [Serratia sp. AS12]
gi|333931993|ref|YP_004505571.1| endonuclease III [Serratia plymuthica AS9]
gi|386328862|ref|YP_006025032.1| endonuclease III [Serratia sp. AS13]
gi|333473600|gb|AEF45310.1| endonuclease III [Serratia plymuthica AS9]
gi|333491099|gb|AEF50261.1| endonuclease III [Serratia sp. AS12]
gi|333961195|gb|AEG27968.1| endonuclease III [Serratia sp. AS13]
Length = 211
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T +LA +++ I+ GL +KA +
Sbjct: 33 LISVLLSAQATDVSVNKATAKLYPVANTPAALLALGVDGVKSYIKTIGLFNSKAENVIKT 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE L G + E +A L G+G KT VL VDTH+F
Sbjct: 93 CRMLLE---------LHGGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ + P + ++ L + +P E K D + HG+ CI RK
Sbjct: 144 VCNRTNFAP-GKNVDQVEEKLLKVVPGEFKVDCHHWFILHGRY--TCI------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE + KT
Sbjct: 195 GS-CIIEDLCEFAGKT 209
>gi|357636663|ref|ZP_09134538.1| endonuclease III [Streptococcus macacae NCTC 11558]
gi|357585117|gb|EHJ52320.1| endonuclease III [Streptococcus macacae NCTC 11558]
Length = 207
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS TT+A KA +L + FPT E + A + I + I GL KA +K
Sbjct: 35 LVAVVLSAQTTDAAVNKATPALFAAFPTPEKMAKASEAEIASYISKLGLYRNKAKFLKKC 94
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
LLE+ G + + + EL G+G KT V+ F VDTHV
Sbjct: 95 ANQLLENFGG---------QVPQTRKELESLSGVGRKTANVVMSVGFGLPAFAVDTHVER 145
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKE 233
I K V +A + + + +PKE
Sbjct: 146 ICKHHNIVKKSATPLEVEKRVMEVLPKE 173
>gi|456351740|dbj|BAM86185.1| endonuclease III DNA-(apurinic or apyrimidinic site) lyase
[Agromonas oligotrophica S58]
Length = 290
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 67/162 (41%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA L T + ++A ++ + I+ GL TKA KN+
Sbjct: 113 LVAVVLSAQATDAGVNKATRPLFKVADTPQKMIALGEETLREYIKTIGLYRTKA---KNV 169
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ KL E+ G + + EL G G KT VL + VDTHVF
Sbjct: 170 IAL----SQKLITEF--GGEVPRTRGELESLPGAGRKTANVVLNMAFGEHTMAVDTHVFR 223
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ G P + L L + IP E + L HG+
Sbjct: 224 VGNRTGLAPGKTPL-EVELGLEKVIPAEFMLHAHHWLILHGR 264
>gi|379734022|ref|YP_005327527.1| Endonuclease III [Blastococcus saxobsidens DD2]
gi|378781828|emb|CCG01479.1| Endonuclease III [Blastococcus saxobsidens DD2]
Length = 266
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 99/255 (38%), Gaps = 22/255 (8%)
Query: 21 PTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEE 80
P ++RP R R L F PE R M R+ + D + E +
Sbjct: 8 PAYARPVRAR-RPTRAALTGASPFDPEETPLAQTRRARRMARELAVIHADA--HCELDFT 64
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
+ + LV TVLS TT+ K +L + +P + A++ +E ++ G KA
Sbjct: 65 NAFELLVATVLSAQTTDKMVNKVTPTLFARYPDAVALAGADRGELETILKPTGFFRAKAN 124
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + + L+E + E R + AEL G+G KT VL VD
Sbjct: 125 SVLGLSQVLVE---RFDGEVPRRM------AELVTLPGVGRKTANVVLGNAFGVPGLTVD 175
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH + + GW D K + + +PK D + + HG+ R C
Sbjct: 176 THFGRLVRRFGWT-AEEDPVKVEAEVARLVPKREWTDFSHRVIFHGR--RVC-------H 225
Query: 261 RKESAGNLCPLLNYC 275
K++A C L +C
Sbjct: 226 AKKAACGACGLAQWC 240
>gi|407692636|ref|YP_006817425.1| endonuclease III [Actinobacillus suis H91-0380]
gi|407388693|gb|AFU19186.1| endonuclease III [Actinobacillus suis H91-0380]
Length = 210
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 88/222 (39%), Gaps = 22/222 (9%)
Query: 60 MTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
+TR +N P E + + L+ +LS T+ KA L T + +L
Sbjct: 10 LTRLRNENPHPTTELNYSNP---FELLIAVILSAQATDKGVNKATDKLFPVANTPQAILD 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
++ I+ GL +KA I + L+E + E + L G+
Sbjct: 67 LGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHHG---------EVPESREALEALAGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL VDTH+F +S G+ P D K L + +P E K D++
Sbjct: 118 GRKTANVVLNTAFGHPTIAVDTHIFRVSNRTGFAP-GKDVVKVEEKLLKVVPAEFKVDVH 176
Query: 240 CLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G+ C + + CE +KT
Sbjct: 177 HWLILHGRY--TCI------ARKPRCGS-CIIEDLCEYKDKT 209
>gi|158522177|ref|YP_001530047.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfococcus oleovorans
Hxd3]
gi|158511003|gb|ABW67970.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfococcus oleovorans
Hxd3]
Length = 220
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L T+LS T +A + A L + T E + A + IE I G PTKA + I
Sbjct: 41 LASTLLSLRTKDAVTDAAARRLLAVANTPEQIAALPAQKIEKLIYPVGFYPTKAKRLIEI 100
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G DE++A L+ G+G KT VL+ +D VDTHV
Sbjct: 101 SRILLERHD--------GRVPDEMEALLA-LPGVGRKTANLVLIEGFGRDGICVDTHVHR 151
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
IS G V T +T L + +PK+ N LL ++G+
Sbjct: 152 ISNRTGIV-TTRTPEETEFALRKTLPKKYWKPYNELLVSYGQ 192
>gi|345862301|ref|ZP_08814530.1| endonuclease III [Desulfosporosinus sp. OT]
gi|344324588|gb|EGW36137.1| endonuclease III [Desulfosporosinus sp. OT]
Length = 214
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 88/201 (43%), Gaps = 19/201 (9%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E + + L+ T+LS T+ SL + T E +LA Q +EN IR GL
Sbjct: 26 ELEFRTPFELLIATILSAQCTDERVNLVTVSLFAETNTPEEILALGQIELENRIRSLGLY 85
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
KA KNIL + ++ +E GL ++I + L + G+G KT V
Sbjct: 86 HNKA---KNIL-----AACRVIVEDFAGLVPNDIDS-LRKLPGVGRKTANVVASNAFGIP 136
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKK 255
VDTHVF ++ +G + K L + P+E ++ LL HG+ R C+ +
Sbjct: 137 ALAVDTHVFRVAHRLG-IANGKTPEKVEEELLRIFPRERWTQVHHLLIFHGR--RICVAR 193
Query: 256 GGNRQRKESAGNLCPLLNYCE 276
N + CPL C+
Sbjct: 194 KPNCEE-------CPLTVVCK 207
>gi|386814885|ref|ZP_10102103.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Thiothrix nivea DSM 5205]
gi|386419461|gb|EIJ33296.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Thiothrix nivea DSM 5205]
Length = 210
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 14/178 (7%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
N E E S + L+ +LS T+ KA A L T + + A ++ +++ I+
Sbjct: 19 NPATELEYGSAFELLIAVILSAQATDKGVNKATARLFPAANTPKAIYALGEEGLKDYIKT 78
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL +KA I + L+E + E +A L G+G KT +L
Sbjct: 79 IGLFNSKAKNIIETCRILVEKHHS---------QVPEDRAALEALPGVGRKTANVILNTA 129
Query: 192 LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH--LNQRIPKELKFDLNCLLYTHGK 247
+ VDTH+F +S G P RN + L + +PK+ D + L HG+
Sbjct: 130 FRHPTMAVDTHIFRVSNRTGIAP---GRNVLEVEKALLKHVPKQYLLDAHHWLILHGR 184
>gi|365093482|ref|ZP_09330547.1| endonuclease III [Acidovorax sp. NO-1]
gi|363414362|gb|EHL21512.1| endonuclease III [Acidovorax sp. NO-1]
Length = 212
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 10/172 (5%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E +V + L +LS T+ KA L T + ++ + +E I+ GL
Sbjct: 23 ELEYTTVFELLAAVLLSAQATDVGVNKATRRLFPVAGTPQAIVELGLERLEGYIKTIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
+KA + + L+ES + + + L G+G KT VL Q
Sbjct: 83 KSKARHLMETCRILVESHAGV---------VPRTREALEALPGVGRKTANVVLNVAFGQP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
VDTH+F +S G P + + L +R+P E D + L HG+
Sbjct: 134 TMAVDTHIFRVSNRTGLAP-GKNPLAVEMQLMKRVPAEYAVDSHHWLILHGR 184
>gi|212224145|ref|YP_002307381.1| endonuclease III [Thermococcus onnurineus NA1]
gi|212009102|gb|ACJ16484.1| endonuclease III [Thermococcus onnurineus NA1]
Length = 243
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 12/168 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG--LAPTKAACIK 143
L+ ++SQ + + K + L + E + + ++ ++ G L TK I
Sbjct: 52 LIHCIISQRMRDEVTYKVWEKLFEKYGDIETIARTPIEEMQTFLKENGVGLWKTKGEWIV 111
Query: 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHV 203
+ +L+ G G D+I EL + GIG K VL + + PVDTHV
Sbjct: 112 KASQIILKEYG--------GKVPDDIH-ELMKLPGIGRKCANIVLAYGFGRQAIPVDTHV 162
Query: 204 FEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
ISK +G P + +L + IP+E +N + HGK +CR
Sbjct: 163 NRISKRLGLAPPRVQPERVEDYLRELIPREKWIYVNHAMVDHGKTICR 210
>gi|224004634|ref|XP_002295968.1| glycosylase [Thalassiosira pseudonana CCMP1335]
gi|209586000|gb|ACI64685.1| glycosylase [Thalassiosira pseudonana CCMP1335]
Length = 284
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 110 TFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEI 169
TFPT E + + E+ +R GL ++ I L++S G+ L LR L+ ++
Sbjct: 161 TFPTIESL----SEATEDELRGMGLG-YRSKYITETRDLLVKSGGEEYLIGLRSLTDAQV 215
Query: 170 -KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS 207
+ EL++F GIG K CV +F L QDD PVD HV I+
Sbjct: 216 VQDELTKFSGIGRKVADCVALFSLDQDDAIPVDVHVQHIA 255
>gi|70732175|ref|YP_261931.1| endonuclease III [Pseudomonas protegens Pf-5]
gi|68346474|gb|AAY94080.1| endonuclease III [Pseudomonas protegens Pf-5]
Length = 212
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 82/201 (40%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS +T+ KA A L T + A + + I+ GL +KA
Sbjct: 28 SPFELLIAVILSAQSTDVGVNKATAKLFPVANTPAAIYALGVEGLSEYIKTIGLYNSKAK 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + L+E + + + EL G+G KT VL +Q VD
Sbjct: 88 NVIETCRLLVERHNS---------EVPQTREELEALPGVGRKTANVVLNTAFRQLTMAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S G P + + L + +PKE D + L HG+ C+
Sbjct: 139 THIFRVSNRTGLAP-GKNVVEVEKKLMKFVPKEFLLDSHHWLILHGRYV--CL------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE KT
Sbjct: 190 RKPRCGS-CRIEDLCEYKQKT 209
>gi|415885277|ref|ZP_11547205.1| putative EndoIII-related endonuclease [Bacillus methanolicus MGA3]
gi|387590946|gb|EIJ83265.1| putative EndoIII-related endonuclease [Bacillus methanolicus MGA3]
Length = 218
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 26/213 (12%)
Query: 72 NEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRC 131
N + E + + L+ +LS T+A K L + T E L+ + ++N IR
Sbjct: 20 NAHGELNHSNPFELLIAVLLSAQCTDALVNKVTKDLFKKYKTPEDYLSVPLEELQNDIRS 79
Query: 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191
GL KA I+++ + L++ G L + +D + EL + G+G KT V+
Sbjct: 80 IGLYRNKAKNIQSLCRMLIDEYGGL-------VPMD--RDELMKLPGVGRKTANVVVSVA 130
Query: 192 LQQDDFPVDTHVFEISKAIG---WVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL 248
VDTHV +SK +G W + + KT L +++PKE ++ + TH ++
Sbjct: 131 FGVPAIAVDTHVERVSKRLGICRWKDSVLEVEKT---LMRKVPKE-EWSI-----THHRM 181
Query: 249 CRNCIKKGGNRQRKESAG-NLCPLLNYCEKSNK 280
I G + ++ LCPLL+ C + K
Sbjct: 182 ----IFFGRYHCKAQNPKCELCPLLDLCREGKK 210
>gi|365895713|ref|ZP_09433812.1| endonuclease III DNA-(apurinic or apyrimidinic site) lyase
[Bradyrhizobium sp. STM 3843]
gi|365423517|emb|CCE06354.1| endonuclease III DNA-(apurinic or apyrimidinic site) lyase
[Bradyrhizobium sp. STM 3843]
Length = 301
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 12/188 (6%)
Query: 62 RDKNSVPLDMNEYDEGEEESV--LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
RD S N +GE E + LV VLS T+A KA L + T + ++A
Sbjct: 98 RDAFSRFAKANPEPKGELEHLNPFTLLVAVVLSAQATDAGVNKATRPLFTVADTPQKMIA 157
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
+ + + I+ GL TKA KN++ L E KL ++ G + +AE+ G
Sbjct: 158 LGEDRLRDYIKTVGLYRTKA---KNVI-ALSE---KLIRDF--GGEVPRTRAEIESLPGA 208
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL + VDTHVF ++ G P + L L + IP E +
Sbjct: 209 GRKTANVVLNMAFGERTMAVDTHVFRVANRTGLAPGKTPL-EVELGLEKVIPAEFMLHAH 267
Query: 240 CLLYTHGK 247
L HG+
Sbjct: 268 HWLILHGR 275
>gi|78043065|ref|YP_359967.1| endonuclease III [Carboxydothermus hydrogenoformans Z-2901]
gi|77995180|gb|ABB14079.1| endonuclease III [Carboxydothermus hydrogenoformans Z-2901]
Length = 210
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 21/199 (10%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
+++ LV VLS +T+ K L +L ++ + IR GL KA
Sbjct: 27 QNIFQLLVAVVLSAQSTDRQVNKVTEKLFLFVKEPRDLLDMGEEELSRQIRSLGLYRNKA 86
Query: 140 ACIKNILKCL-LESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
+ I + L E G++ + AEL + G+GPKT ++ + FP
Sbjct: 87 RNLIKIAEILDREYHGQVPDSF----------AELLKLPGVGPKTAEVIVGVGFNKPSFP 136
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGN 258
VDTHVF +++ +G + A L + P DL+ L G+ R C
Sbjct: 137 VDTHVFRVARRLG-LSKARTPEGVSFDLKKIFPPNSWIDLHHRLIFFGR--RIC------ 187
Query: 259 RQRKESAGNLCPLLNYCEK 277
+ ++ + N+CP +C+K
Sbjct: 188 -KAQKPSCNICPFPEFCQK 205
>gi|326503606|dbj|BAJ86309.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 723
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 67/177 (37%), Gaps = 24/177 (13%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
WE V A + I G A I+ L + + G L++LR L + K L
Sbjct: 511 WEAVQQASFVDVAKCIAGRGQHYVLALRIQAFLTRIKKDHGSFDLDWLRYLPRESAKKYL 570
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWV---------------PTAAD 218
G+G K+V C+ + L+ FPVD +V I + WV P D
Sbjct: 571 ISINGLGAKSVDCIRLLSLEHKAFPVDVNVARIVTRLQWVELQCCSEEFHSVDLYPLMQD 630
Query: 219 RNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
I KE ++L+CL+ T GK+ C K N N CP C
Sbjct: 631 VQSYLWPRLCTIDKEKLYELHCLMITFGKVI--CTKVDPN-------CNACPFRGDC 678
>gi|307943421|ref|ZP_07658765.1| endonuclease III [Roseibium sp. TrichSKD4]
gi|307773051|gb|EFO32268.1| endonuclease III [Roseibium sp. TrichSKD4]
Length = 272
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+ +A +L T ++A + + IR GL TKA KN+
Sbjct: 75 LVAVVLSAQATDVGVNRATKNLFQIADTPAKMVALGEDRVREEIRTIGLFKTKA---KNV 131
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LL + L G + E + L + G+G KT VL VDTH+F
Sbjct: 132 I--LLSEQ----LIRDHGGEVPEDREALEKLPGVGRKTANVVLNIFFGYPTIAVDTHLFR 185
Query: 206 ISKAIGWVP--TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKL--------CRNCI 253
+S IG P T D K L + IP+E + L HG+ CR C+
Sbjct: 186 LSNRIGMAPGKTPLDVEKA---LEKVIPQEFSQHAHHWLILHGRYICKARKPECRRCV 240
>gi|337266339|ref|YP_004610394.1| endonuclease III [Mesorhizobium opportunistum WSM2075]
gi|336026649|gb|AEH86300.1| endonuclease III [Mesorhizobium opportunistum WSM2075]
Length = 266
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA +L T + +LA + + + IR GL KA + +
Sbjct: 71 LVAVVLSAQATDAGVNKATRALFKAADTPQKMLALGEAKVGDHIRTIGLWRNKAKNVIAL 130
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+ G ++ + + EL + G+G KT VL Q VDTH+F
Sbjct: 131 SEALIRDHGG---------AVPDDRDELVKLPGVGRKTANVVLNMAFGQHTMAVDTHIFR 181
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I +G P + L + IP E + L HG+
Sbjct: 182 IGNRLGLAPGKTPEQVEH-GLLKIIPDEYMRHAHHWLILHGR 222
>gi|383100759|emb|CCG47990.1| conserved hypothetical protein, expressed [Triticum aestivum]
Length = 950
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 92/248 (37%), Gaps = 46/248 (18%)
Query: 65 NSV---PLDMNEYDEGEE---------ESVLDGLVKTVLSQNTTEANSL------KAFAS 106
NSV P+D E GEE E L + T+ ++T + L K + +
Sbjct: 386 NSVFTNPIDCEEVGYGEEDKSGKPICTEKTLRKFIATLRVEDTAHWDKLRKEAYGKGYDN 445
Query: 107 LKSTFPT----WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLR 162
T T WE V A + I G A I+ L + + G L++LR
Sbjct: 446 GSKTRITDKVNWEAVQKASFVDVAKCIAGRGQHYLLALRIQAFLTRIKKDHGSFDLDWLR 505
Query: 163 GLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWV--------- 213
L + K L G+G K+V C+ + L+ FPVD +V I + WV
Sbjct: 506 CLPRESAKKYLLSINGLGAKSVDCIRLLSLEHKAFPVDVNVARIVTRLQWVELQCCSEEF 565
Query: 214 ------PTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267
P D I KE ++L+CL+ T GK+ C K N N
Sbjct: 566 HSVDLYPLMQDVQSYLWPRLCTIDKEKLYELHCLMITFGKVI--CTKVDPN-------CN 616
Query: 268 LCPLLNYC 275
CP C
Sbjct: 617 ACPFRGDC 624
>gi|197119883|ref|YP_002140310.1| endonuclease III-like protein [Geobacter bemidjiensis Bem]
gi|197089243|gb|ACH40514.1| endonuclease III-related protein [Geobacter bemidjiensis Bem]
Length = 228
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 25/197 (12%)
Query: 87 VKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE------QKCIENAIRCGGLAPTKAA 140
V +L+QNT N KA +LK E +L+AE + + IR G K+A
Sbjct: 41 VGAILTQNTNWLNVEKAIVNLKR-----EGLLSAEALREIDEGRLAELIRPSGFFNVKSA 95
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+K + L E G L + +G I ++ ELS RGIGP+T +L++ + F VD
Sbjct: 96 RLKGFVGWLFERYGSLDAMF-QGDWIG-LREELSAVRGIGPETCDSILLYAGGKPSFVVD 153
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTHGKLCRNCIKKGGN 258
+ + +G + D ++ +P E+ + + L+ K R+C
Sbjct: 154 AYTRRLFSRLGLMREEDDYHRVRALFMDHLPAEVPLFNEYHALIVEQCK--RHC------ 205
Query: 259 RQRKESAGNLCPLLNYC 275
RK+ + CPL +C
Sbjct: 206 --RKKPLCDGCPLTRFC 220
>gi|31296708|gb|AAP46637.1| PG3 [Hordeum vulgare]
Length = 689
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 112/300 (37%), Gaps = 63/300 (21%)
Query: 20 YPTHSRP-TAEECRGIRDELLALHGFPPEFVKYR---NQRLKHNMTRDKNSV---PLDMN 72
+P + R AEEC + PP V + N + + NSV P++
Sbjct: 165 FPMNKRKGNAEECSYV----------PPSTVDIKENLNLTKAPDASDSTNSVFTNPIECE 214
Query: 73 EYDEGEE-----------ESVLDGLVKTVLSQNTTEANSLKAFASLK----------STF 111
E D GEE E L + T+ ++T + L+ A K +
Sbjct: 215 EVDYGEEATDKSGKPICKEKTLRKFIATLRLEDTAHWDKLREEAYRKGYDNGSKTRITDK 274
Query: 112 PTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKA 171
WE V A + I G A I+ L + + G L++LR L + K
Sbjct: 275 VNWEAVQQASFVDVAKCIAGRGQHYVLALRIQAFLTRIKKDHGSFDLDWLRYLPRESAKK 334
Query: 172 ELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTY-LHLNQRI 230
L G+G K+V C+ + L+ FPVD +V I + WV + + + L Q +
Sbjct: 335 YLISINGLGAKSVDCIRLLSLEHKAFPVDVNVPRIVTRLQWVELQCCSEEFHSVDLYQLM 394
Query: 231 P---------------KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYC 275
P KE ++L+CL+ T GK+ C K N N CP C
Sbjct: 395 PGCGKITLWPRLCTIDKEKLYELHCLMITFGKVI--CTKVDPN-------CNACPFRGDC 445
>gi|94309959|ref|YP_583169.1| DNA glycosylase and apyrimidinic (AP) lyase [Cupriavidus
metallidurans CH34]
gi|93353811|gb|ABF07900.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
[Cupriavidus metallidurans CH34]
Length = 214
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 17/187 (9%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
R+ N P EY S + L+ +LS T+ KA L + + +LA
Sbjct: 14 REVNPTPTTELEYS-----SPFELLIAVLLSAQATDVGVNKATRLLFPVAHSPQQILALG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIG 180
+ + + I+ GL TKA + + L+E GK + ++ L G+G
Sbjct: 69 EAGLIDYIKTIGLYKTKAKHVMETCRILVEKYDGK----------VPPVREALESLPGVG 118
Query: 181 PKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNC 240
KT VL Q VDTH+F +S G P + + L + +PKE D +
Sbjct: 119 RKTANVVLNVAFGQPTIAVDTHIFRVSNRTGLAP-GKNPDAVEQKLLKVVPKEFLHDAHH 177
Query: 241 LLYTHGK 247
L HG+
Sbjct: 178 WLILHGR 184
>gi|398857977|ref|ZP_10613672.1| endonuclease III [Pseudomonas sp. GM79]
gi|399001819|ref|ZP_10704528.1| endonuclease III [Pseudomonas sp. GM18]
gi|398126760|gb|EJM16186.1| endonuclease III [Pseudomonas sp. GM18]
gi|398239983|gb|EJN25678.1| endonuclease III [Pseudomonas sp. GM79]
Length = 212
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 84/207 (40%), Gaps = 31/207 (14%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASL--KSTFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
S + L+ +LS +T+ KA A L + P H L E + I+ GL +K
Sbjct: 28 SPFELLIAVILSAQSTDVGVNKATAKLFPVANTPAAIHALGVEG--LSEYIKTIGLFNSK 85
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A + + L+E G + + + L G+G KT VL +Q
Sbjct: 86 AKNVIETCRLLVERHGG---------EVPQTREALEALPGVGRKTANVVLNTAFRQLTMA 136
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGKLCRNCIK 254
VDTH+F +S G P K + + Q+ +PKE D + L HG+ C+
Sbjct: 137 VDTHIFRVSNRTGIAP-----GKNVVEVEQKLMKFVPKEYLLDAHHWLILHGRYV--CL- 188
Query: 255 KGGNRQRKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE KT
Sbjct: 189 -----ARKPRCGS-CRIEDLCEYKQKT 209
>gi|398839352|ref|ZP_10596600.1| endonuclease III [Pseudomonas sp. GM102]
gi|398902044|ref|ZP_10650755.1| endonuclease III [Pseudomonas sp. GM50]
gi|398113069|gb|EJM02920.1| endonuclease III [Pseudomonas sp. GM102]
gi|398179053|gb|EJM66678.1| endonuclease III [Pseudomonas sp. GM50]
Length = 212
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 84/207 (40%), Gaps = 31/207 (14%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASL--KSTFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
S + L+ +LS +T+ KA A L + P H L E + I+ GL +K
Sbjct: 28 SPFELLIAVILSAQSTDVGVNKATAKLFPVANTPAAIHALGVEG--LSEYIKTIGLFNSK 85
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A + + L+E G + + + L G+G KT VL +Q
Sbjct: 86 AKNVIETCRLLVERHGG---------EVPQTREALEALPGVGRKTANVVLNTAFRQLTMA 136
Query: 199 VDTHVFEISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGKLCRNCIK 254
VDTH+F +S G P K + + Q+ +PKE D + L HG+ C+
Sbjct: 137 VDTHIFRVSNRTGIAP-----GKNVVEVEQKLMKFVPKEYLLDAHHWLILHGRYV--CL- 188
Query: 255 KGGNRQRKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE KT
Sbjct: 189 -----ARKPRCGS-CRIEDLCEYKQKT 209
>gi|220918837|ref|YP_002494141.1| endonuclease III [Anaeromyxobacter dehalogenans 2CP-1]
gi|219956691|gb|ACL67075.1| endonuclease III [Anaeromyxobacter dehalogenans 2CP-1]
Length = 230
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 13/185 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS +T+A K +L + FP A+ + + +R GL +N
Sbjct: 49 LVSVILSAQSTDAGVNKVTPALFARFPDAAAYAGAQPEELWPYLRSLGL-------FRNK 101
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K ++ + G + E+ G + + L G+G KT VL+ + FPVDTHV
Sbjct: 102 AKAIVAAMGAIAREH--GGRVPRTREALEALPGVGRKTAGVVLVHLGAAEAFPVDTHVGR 159
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+S+ +G + D ++ L +P+ + L HG+ R C + R A
Sbjct: 160 VSRRLG-LTREQDPDRVERDLMALLPEARWGRGHQLFVWHGR--RTCAARAPACSRCVVA 216
Query: 266 GNLCP 270
+LCP
Sbjct: 217 -DLCP 220
>gi|343519831|ref|ZP_08756806.1| base excision DNA repair protein, HhH-GPD family [Haemophilus
pittmaniae HK 85]
gi|343392256|gb|EGV04826.1| base excision DNA repair protein, HhH-GPD family [Haemophilus
pittmaniae HK 85]
Length = 415
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 15/177 (8%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
L V +L Q TT N++ A ++ T E +LA + ++ IR G K+A I
Sbjct: 238 LSDWVSMILIQQTTAKNAINALQQIEDIL-TLEQLLAVSDEELQQRIRPAGFYKQKSAYI 296
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
K ++ E G+L + + + ++ +L +G+GP+T +L++ ++ F D +
Sbjct: 297 KYQMRWFAEQGGELS--AFKTIPTETLRKQLLSLKGVGPETADAMLLYLFERKVFIADQY 354
Query: 203 VFEISKAIGWVPTAADRNKTY-------LHLNQRIPKELKFDLNCLLYTHGKLCRNC 252
+ +G + +TY + L +RI + + + ++ HGK+ R
Sbjct: 355 ALRLFNRLG-----LSQAQTYTALRAECMPLMERISLKTAQEWHAVIDEHGKVFRQA 406
>gi|323525305|ref|YP_004227458.1| endonuclease III [Burkholderia sp. CCGE1001]
gi|323382307|gb|ADX54398.1| endonuclease III [Burkholderia sp. CCGE1001]
Length = 214
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 10/179 (5%)
Query: 69 LDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENA 128
L+ + E E + + L+ +LS T+ + KA + T + VL ++ + N
Sbjct: 16 LNPHPTTELEHTTPFELLIAVLLSAQATDVSVNKAMRKMFPVANTPQKVLELGEEGVANY 75
Query: 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
I+ GL KA + + LL+ G + E + L G+G KT +L
Sbjct: 76 IKTIGLYRNKAKNVIATCRILLDQYGG---------EVPEDREALESLPGVGRKTANVIL 126
Query: 189 MFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
VDTH+F ++ G P D L + P E K D + L HG+
Sbjct: 127 NTAFGHPTIAVDTHIFRVANRTGLAP-GKDVRAVEAALEKFTPTEFKHDAHHWLILHGR 184
>gi|218281634|ref|ZP_03488042.1| hypothetical protein EUBIFOR_00609 [Eubacterium biforme DSM 3989]
gi|218217269|gb|EEC90807.1| hypothetical protein EUBIFOR_00609 [Eubacterium biforme DSM 3989]
Length = 208
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
ES +V VLS TT+A K +L +PT E + A +E I+ GL KA
Sbjct: 24 ESAFQLIVAVVLSAQTTDAMVNKVTPALFKAYPTAEKMAEATVSELEPYIKRIGLYRNKA 83
Query: 140 ACIKNILKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
I N+ K L+E G++ Y +L G+G KT V F
Sbjct: 84 RSISNLSKDLVERYHGQVPYTY----------KDLMSLAGVGRKTANVVRSVAFDIPSFA 133
Query: 199 VDTHVFEISKAIG 211
VDTHV +SK +G
Sbjct: 134 VDTHVNRVSKRLG 146
>gi|409095774|ref|ZP_11215798.1| endonuclease III [Thermococcus zilligii AN1]
Length = 242
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 14/169 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIR--CGGLAPTKAACIK 143
L+ ++SQ + + K + L + E + A + ++ +R GL TK I
Sbjct: 44 LIHCIISQRMRDEVTYKVWEELFRKYGDIETIAATPIEEMQEFLRKQGVGLWKTKGEWIV 103
Query: 144 NILKCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+ LLE GK + E EL + GIG K VL + + PVDTH
Sbjct: 104 RASQILLEKYNGK----------VPEDINELMKLPGIGRKCANIVLAYGFGKQAIPVDTH 153
Query: 203 VFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
V ISK +G P K +L IP++ +N + HG+ +CR
Sbjct: 154 VNRISKRLGLAPPGVAPEKVEEYLAGLIPEDKWIYVNHAMVDHGRSICR 202
>gi|386741494|ref|YP_006214673.1| endonuclease III [Providencia stuartii MRSN 2154]
gi|384478187|gb|AFH91982.1| endonuclease III [Providencia stuartii MRSN 2154]
Length = 213
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 22/222 (9%)
Query: 60 MTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLA 119
+TR +++ P N E + S + L+ +LS T+ + KA A L T E +LA
Sbjct: 10 LTRLRDNNP---NPTTELQFNSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPEAMLA 66
Query: 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGI 179
I+ I+ GL TKA + K L+E + E +A L G+
Sbjct: 67 LGVDGIKEYIKTIGLFNTKAESVIKTCKILIEKHNS---------QVPEDRAALEALPGV 117
Query: 180 GPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLN 239
G KT VL VDTH+F + + P + + L + +P E K D +
Sbjct: 118 GRKTANVVLNTAFGWPTIAVDTHIFRVCNRTNFAP-GKNVVEVEEKLLKVVPTEFKVDCH 176
Query: 240 CLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
HG+ CI RK G+ C + + CE +K
Sbjct: 177 HWFILHGRY--TCI------ARKPRCGS-CIIEDLCEFKDKV 209
>gi|443470920|ref|ZP_21060997.1| Endonuclease III [Pseudomonas pseudoalcaligenes KF707]
gi|442900750|gb|ELS26826.1| Endonuclease III [Pseudomonas pseudoalcaligenes KF707]
Length = 212
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 84/216 (38%), Gaps = 27/216 (12%)
Query: 70 DMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAI 129
D N E + + L+ +LS T+ KA A L T E + A + + I
Sbjct: 17 DPNPTTELAYSTPFELLIAVILSAQATDVGVNKATARLYPVANTPEAIYALGVEGLSEYI 76
Query: 130 RCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189
+ GL +KA + + L+E + + + L G+G KT VL
Sbjct: 77 KTIGLYNSKARNVIETCRILIERHES---------QVPDNREALEALPGVGRKTANVVLN 127
Query: 190 FHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTH 245
+Q VDTH+F +S G P K L + ++ +PKE D + L H
Sbjct: 128 TAFRQPTMAVDTHIFRVSNRTGIAP-----GKNVLEVEKKLLKFVPKEFLLDAHHWLILH 182
Query: 246 GKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
G+ C+ RK G C + + CE KT
Sbjct: 183 GRYV--CV------ARKPRCGA-CKIEDLCEYKAKT 209
>gi|373457007|ref|ZP_09548774.1| endonuclease III [Caldithrix abyssi DSM 13497]
gi|371718671|gb|EHO40442.1| endonuclease III [Caldithrix abyssi DSM 13497]
Length = 231
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 68/166 (40%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ T+L+ +T+ L +P + ++ I I+ GL KA I N+
Sbjct: 43 LISTMLAAQSTDKRVNIVTEKLFKDYPDAASMRRMSEEQIREYIKTVGLYKAKAKNILNV 102
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L E G I + EL G+G KT VL VDTHVF
Sbjct: 103 SEILDEKYGG---------DIPATREELMALPGVGRKTANVVLSIAKNVPAIAVDTHVFR 153
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHG-KLCR 250
+S IG + A D T L + IPKE + L HG K+CR
Sbjct: 154 VSNRIG-LARAKDVLNTEKQLMESIPKEKWSQAHHWLIWHGRKICR 198
>gi|298530217|ref|ZP_07017619.1| HhH-GPD family protein [Desulfonatronospira thiodismutans ASO3-1]
gi|298509591|gb|EFI33495.1| HhH-GPD family protein [Desulfonatronospira thiodismutans ASO3-1]
Length = 215
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 25/197 (12%)
Query: 87 VKTVLSQNTTEANSLKAFASLKS---TFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143
V VL+QNT +N KA +LKS P E + + + + + IR G KA +K
Sbjct: 34 VGAVLTQNTNWSNVQKAINNLKSRDLLHP--EKMASLDDELLAELIRPSGYFRIKARRLK 91
Query: 144 NILKCL-LESKGKLCLEYLRGLS---IDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPV 199
N+L+ L LE C +L LS + +++ +L + +GIGP+T +L++ L++ F V
Sbjct: 92 NLLEFLRLE-----CAYHLPDLSSQDLQQLRDKLLQVKGIGPETADSILLYALEKPSFVV 146
Query: 200 DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYT--HGKLCRNCIKKGG 257
D + I V D ++ R+P+++ LY H L R KK
Sbjct: 147 DAYTSRILNRHLLVHEDIDYHELRDFFMDRLPRDVA------LYNEYHALLVRTG-KKWC 199
Query: 258 NRQRKESAGNLCPLLNY 274
N+ G CPL +Y
Sbjct: 200 NKNNPRCDG--CPLGSY 214
>gi|425738168|ref|ZP_18856435.1| endonuclease III [Staphylococcus massiliensis S46]
gi|425480304|gb|EKU47471.1| endonuclease III [Staphylococcus massiliensis S46]
Length = 220
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 20/195 (10%)
Query: 87 VKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146
+ +LS T+ K ASL + T E LA E + +++ IR GL K+ I+ +
Sbjct: 35 IAVLLSAQCTDKLVNKVTASLFEKYKTPEDYLAVELEELQDDIRSIGLYRNKSKNIRKLC 94
Query: 147 KCLLES-KGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
LLE GK + E AEL G+G KT V+ + VDTHV
Sbjct: 95 ASLLEKFDGK----------VPETHAELESLAGVGRKTANVVMSVAFGEPSLAVDTHVER 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+SK +G + + L IP+E + L G+ +C+ K+
Sbjct: 145 VSKRLGICRYKDNVREVERKLTSIIPREQWTKSHHQLIFFGRY--HCLA-------KKPK 195
Query: 266 GNLCPLLNYCEKSNK 280
+ CPLL C + K
Sbjct: 196 CSECPLLQDCREGQK 210
>gi|77464612|ref|YP_354116.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Rhodobacter sphaeroides 2.4.1]
gi|221640524|ref|YP_002526786.1| endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase
[Rhodobacter sphaeroides KD131]
gi|429207171|ref|ZP_19198430.1| Endonuclease III [Rhodobacter sp. AKP1]
gi|77389030|gb|ABA80215.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Rhodobacter sphaeroides 2.4.1]
gi|221161305|gb|ACM02285.1| Endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase
[Rhodobacter sphaeroides KD131]
gi|428189546|gb|EKX58099.1| Endonuclease III [Rhodobacter sp. AKP1]
Length = 214
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 78/196 (39%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS T+A KA +L + T +L ++ + IR GL KA +N+
Sbjct: 37 LVAVALSAQATDAGVNKATRALFAQVTTPAQMLELGEEGLTEHIRTIGLYRNKA---RNV 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ + +L ++ G + +A L G+G KT VL Q VDTH+F
Sbjct: 94 I-----ALSRLLVDQYDG-EVPSSRAALQSLPGVGRKTANVVLNMWFHQPAMAVDTHIFR 147
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
++ G P D L +P + L HG+ C+ RK
Sbjct: 148 VANRTGIAP-GRDVEAVERALEDHVPAPFALHAHHWLILHGRYI--CVA------RKPRC 198
Query: 266 GNLCPLLNYCEKSNKT 281
G +CP+ + C KT
Sbjct: 199 G-ICPIRDLCPYEEKT 213
>gi|390443653|ref|ZP_10231441.1| endonuclease III [Nitritalea halalkaliphila LW7]
gi|389666256|gb|EIM77710.1| endonuclease III [Nitritalea halalkaliphila LW7]
Length = 233
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+ L FPT EH+ ++ + IR K K++
Sbjct: 34 LVAVVLSAQCTDKRVNIVTEKLFQDFPTPEHLANSDFDSLFPYIRSVSYPNNKT---KHL 90
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L GK+ +E + + + EL + G+G KT + Q + VDTHVF
Sbjct: 91 LGL-----GKMLVEEFQS-EVPQTVNELIKLPGVGRKTANVITSVIWHQPNMAVDTHVFR 144
Query: 206 ISKAIGWVP-TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+S+ +G P TA + HL + IPKE + L HG+
Sbjct: 145 VSRRLGLAPLTAKTPLEVEKHLIRHIPKEHVHQAHHWLILHGR 187
>gi|223477172|ref|YP_002581604.1| Endonuclease III [Thermococcus sp. AM4]
gi|214032398|gb|EEB73228.1| Endonuclease III [Thermococcus sp. AM4]
Length = 239
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 155 KLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVP 214
++ LE G D+I EL + GIG K VL + + PVDTHV ISK +G P
Sbjct: 107 RIILEKYNGKVPDDIN-ELMKLPGIGRKCANIVLAYGFGKQAIPVDTHVNRISKRLGLAP 165
Query: 215 TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQRKESAGNLCPLLN 273
K +L + IPKE +N + HG+ +C+ R + ES CPL
Sbjct: 166 PRVPPEKVEEYLRELIPKEKWIYVNHAMVDHGRSICKPI------RPKCES----CPLKE 215
Query: 274 YC 275
C
Sbjct: 216 LC 217
>gi|329944476|ref|ZP_08292641.1| base excision DNA repair protein, HhH-GPD family [Actinomyces sp.
oral taxon 170 str. F0386]
gi|328530241|gb|EGF57120.1| base excision DNA repair protein, HhH-GPD family [Actinomyces sp.
oral taxon 170 str. F0386]
Length = 215
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 70 DMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLK-STFPTWEHVLAAEQKCIENA 128
++ E D ES L+ + VL QNTT ++L++ +L+ +T + +L+ ++ C+ +
Sbjct: 15 ELGEIDPWPAESDLEYVCGAVLVQNTTWGSALRSLDALRDATAFDADRMLSLDEACLIDL 74
Query: 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
IR G KA ++ L +G++ L D ++AEL + G GP+T V
Sbjct: 75 IRPSGFMKAKARALRAYATWLTGPEGRVA----PALGDDALRAELMKLPGFGPETADVVA 130
Query: 189 MFHLQQDDFPVDTHVFEISKAIGW 212
+ + F D + + + G+
Sbjct: 131 LMVYGRPRFIFDAYARRLLRQAGY 154
>gi|374316259|ref|YP_005062687.1| putative endoIII-related endonuclease [Sphaerochaeta pleomorpha
str. Grapes]
gi|359351903|gb|AEV29677.1| putative endoIII-related endonuclease [Sphaerochaeta pleomorpha
str. Grapes]
Length = 220
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 79/190 (41%), Gaps = 24/190 (12%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV T++S T + +L+A L S T +L QK IE AI G TKA KN+
Sbjct: 41 LVSTLISLRTKDEVTLQASRKLFSLADTPHAMLLLGQKAIEEAIYPAGFYKTKA---KNL 97
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L LE + +L + G+G KT L + VD HV +
Sbjct: 98 LAI------SEILEMTYNGKVPSSSEKLLQLPGVGIKTANLTLNLGFGIEAICVDCHVHQ 151
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRN------------- 251
I+ +GWV T +T L +PK LN LL +G+ +C +
Sbjct: 152 IANRMGWVATKTPE-QTEQALQTVMPKRFWIPLNELLVVYGQYICTSVSPWCSKCSETAT 210
Query: 252 CIKKGGNRQR 261
C+K G ++R
Sbjct: 211 CLKNGVKKER 220
>gi|238790384|ref|ZP_04634155.1| Endonuclease III [Yersinia frederiksenii ATCC 33641]
gi|238721491|gb|EEQ13160.1| Endonuclease III [Yersinia frederiksenii ATCC 33641]
Length = 213
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T + +L + +++ I+ GL TKA +N+
Sbjct: 33 LISVLLSAQATDVSVNKATAKLYPLANTPQAILDLGVEGLKSYIKTIGLFNTKA---ENV 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K ++ LE G + E +A L G+G KT VL VDTH+F
Sbjct: 90 IKTC-----RILLEKHHG-EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ G+ P + ++ L + +P E K D + L HG+ CI RK
Sbjct: 144 VCNRTGFAP-GTNVDQVEAKLIKVVPAEFKLDCHHWLILHGRY--TCI------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE K
Sbjct: 195 GS-CIIEDLCEFKEKV 209
>gi|422336392|ref|ZP_16417365.1| endonuclease III [Aggregatibacter aphrophilus F0387]
gi|353346578|gb|EHB90863.1| endonuclease III [Aggregatibacter aphrophilus F0387]
Length = 211
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 80/201 (39%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ KA L T + +LA ++ I+ GL +KA
Sbjct: 28 SPFELLIAVILSAQATDKGVNKATDKLFPIANTPQAILALGVDGLKEYIKTIGLFNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
I + L+E + E +A L G+G KT VL VD
Sbjct: 88 NIIKTCRDLIEKHNG---------EVPEDRAALEALAGVGRKTANVVLNTAFGHPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F + G+ P D K L + +P E K D++ L HG+ C+
Sbjct: 139 THIFRVCNRTGFAP-GKDVVKVEEKLIKVVPAEFKVDVHHWLILHGRY--TCV------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G C + + CE KT
Sbjct: 190 RKPRCGA-CIIEDLCEYKEKT 209
>gi|332526725|ref|ZP_08402827.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Rubrivivax benzoatilyticus JA2]
gi|332111128|gb|EGJ11160.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Rubrivivax benzoatilyticus JA2]
Length = 214
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 69/172 (40%), Gaps = 10/172 (5%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E SV + L +LS T+ KA L + PT + +L + +IR GL
Sbjct: 23 ELEFTSVFELLCAVLLSAQATDVGVNKATKRLFARAPTPQRLLDLGLDQVTESIRTIGLF 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA + + L+E G + + L G+G KT VL +
Sbjct: 83 RTKAKNLIQTCRILVEQHGG---------EVPRSREALEALPGVGRKTANVVLNVAFGEP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
VDTH+F ++ G P L L +R+P + D + L HG+
Sbjct: 134 TMAVDTHIFRVANRTGLAPGKTPL-AVELKLLERVPPKYAVDAHHWLILHGR 184
>gi|410693770|ref|YP_003624391.1| Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)
[Thiomonas sp. 3As]
gi|294340194|emb|CAZ88566.1| Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)
[Thiomonas sp. 3As]
Length = 213
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 18/176 (10%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E + + LV LS T+ + KA SL + T + +L + + AIR GL
Sbjct: 23 ELEYRTPFELLVAVALSAQATDVSVNKATRSLFAVANTPQALLDLGEDRLREAIRTIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA I + L++ G + + L G+G KT VL QD
Sbjct: 83 KTKAKNIIATCRILIDQYGG---------EVPRSREALESLPGVGRKTANVVLNVAFGQD 133
Query: 196 DFPVDTHVFEISKAIGWV----PTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
VDTH+F ++ +G P A + L + IP + + + L HG+
Sbjct: 134 TIAVDTHIFRVANRLGLAKGNTPLAVE-----TRLEKVIPPQFRLHAHHWLILHGR 184
>gi|429083643|ref|ZP_19146675.1| Endonuclease III [Cronobacter condimenti 1330]
gi|426547458|emb|CCJ72716.1| Endonuclease III [Cronobacter condimenti 1330]
Length = 211
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T + +LA ++ I+ GL +KA
Sbjct: 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPQAMLALGVDGVKEYIKTIGLFNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + L+E + E +A L G+G KT VL VD
Sbjct: 88 NVIKTCRILIEQHAG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S + P + + L + +PKE K D + L HG+ CI
Sbjct: 139 THIFRVSNRTKFAP-GKNVDAVEEKLLKVVPKEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE + K
Sbjct: 190 RKPRCGS-CIIEDLCEYAEKV 209
>gi|421767561|ref|ZP_16204310.1| Endonuclease III [Lactococcus garvieae DCC43]
gi|407623979|gb|EKF50770.1| Endonuclease III [Lactococcus garvieae DCC43]
Length = 214
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 18/207 (8%)
Query: 74 YDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG 133
+ E E E+ L+ T+LS T+ KA +L + +P E + A+ +E IR G
Sbjct: 22 HGELEWETPFQLLIATILSAQATDKGVNKATPALFAKYPDPESLAQADIADVEQCIRTIG 81
Query: 134 LAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQ 193
L TKA KNI+K ++ + G + K L G+G KT VL
Sbjct: 82 LYKTKA---KNIVKT-----AQMLVRDFNG-ELPRDKKLLQTLPGVGRKTANVVLGETYG 132
Query: 194 QDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCI 253
VDTHV +SK + VP A + L + IP++ + L G+ +C
Sbjct: 133 IPGIAVDTHVERVSKRLDIVPQKASVLEVEEKLMRLIPEDRWVKTHHHLIFFGRY--HCT 190
Query: 254 KKGGNRQRKESAGNLCPLLNYCEKSNK 280
+ + CP+L YC+ K
Sbjct: 191 ARAPKCEE-------CPVLEYCKFGKK 210
>gi|374636071|ref|ZP_09707655.1| HhH-GPD family protein [Methanotorris formicicus Mc-S-70]
gi|373560329|gb|EHP86596.1| HhH-GPD family protein [Methanotorris formicicus Mc-S-70]
Length = 218
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 16/202 (7%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWE-HVLAAEQKCIENAIRCGGLAPTK 138
E+ + ++ VL+QNT+ N KA +LK E +L + + ++ I+ G K
Sbjct: 23 ETRYEVVIGAVLTQNTSWKNVEKAIENLKKENLIDEIKILNTDIEKLKKLIKPAGFYNIK 82
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSI--DEIKAELSRFRGIGPKTVACVLMFHLQQDD 196
A +KNI K ++E+ E L LSI ++++ E+ +GIG +T +L++ L ++
Sbjct: 83 AERLKNITKFIVENYKNT--ENLAKLSIKLEDLRKEILNVKGIGKETADSILLYALDREI 140
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTHGKLCRNCIK 254
F +D + I + + + ++ + +PK+LK + + L+ GK C
Sbjct: 141 FVIDAYTRRIFSRLRIIEGGEEYDEIRGIFEKNLPKDLKIYKEYHALIVELGK--HYC-- 196
Query: 255 KGGNRQRKESAGNLCPLLNYCE 276
++K CPL N C+
Sbjct: 197 -----KKKNPVCEKCPLHNLCD 213
>gi|319790406|ref|YP_004152039.1| HhH-GPD family protein [Thermovibrio ammonificans HB-1]
gi|317114908|gb|ADU97398.1| HhH-GPD family protein [Thermovibrio ammonificans HB-1]
Length = 221
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLK-STFPTWEHVLAAEQKCIENAIRCGGLAPTK 138
E+ + V VL+QNTT N+ +A +LK + T E + + ++ ++N I+ G K
Sbjct: 26 ETPFEVCVGAVLTQNTTWENASRAVGNLKKANLLTPEALSSTDEGELQNLIKPAGFFRQK 85
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFP 198
A +K + + ++ G +E L+ + ++ +L +GIGP+T +L++ L + F
Sbjct: 86 ARYLKELSRFVVREGG---IEGLKAQPLKVLRPKLLNVKGIGPETADSILLYALDKPSFV 142
Query: 199 VDTHVFEISKAIG 211
VD + + +G
Sbjct: 143 VDKYTKRLLYRLG 155
>gi|323452587|gb|EGB08460.1| hypothetical protein AURANDRAFT_3135, partial [Aureococcus
anophagefferens]
Length = 318
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 105 ASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGL 164
AS TFPT E + E++ + + + G AP A +++ + G L LR
Sbjct: 153 ASEPRTFPTLERLCGVEERTLRD-LGFGYRAPYVAKTARHVR----DKGGDAWLAGLRNA 207
Query: 165 SIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHVFEISK 208
++K L G+GPK CV +F L Q D PVDTHV+ I++
Sbjct: 208 DRADVKVALLECAGVGPKVADCVALFSLDQADAVPVDTHVWRIAR 252
>gi|302385477|ref|YP_003821299.1| endonuclease III [Clostridium saccharolyticum WM1]
gi|302196105|gb|ADL03676.1| endonuclease III [Clostridium saccharolyticum WM1]
Length = 218
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L +LS +T+ + L F T E + A + IE AIR GL KA +N+
Sbjct: 33 LAAIMLSAQSTDKQVEEVLPQLFQRFRTAEQMAEAPLEEIEEAIRTIGLYKNKA---RNL 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
KC G++ E+ G + ++ G+G KT L VDTHVF
Sbjct: 90 KKCC----GQIANEF--GGQVPGDIDKILTLAGVGRKTATLFLADAYGIPGITVDTHVFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
IS+ +GW + + + + L + +PK+ +N L HG+
Sbjct: 144 ISRRLGWA-SGKNPAQVEMELQRILPKDHWNRINFQLIYHGR 184
>gi|376275061|ref|YP_005115500.1| endonuclease III [Brucella canis HSK A52141]
gi|363403628|gb|AEW13923.1| endonuclease III [Brucella canis HSK A52141]
Length = 239
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA +L + T + +LA ++ + IR GL KA KNI
Sbjct: 51 LVAVVLSAQATDAGVNKATRALFAVADTPQKMLALGEEKVGEYIRTIGLWRNKA---KNI 107
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LL L +Y G + + EL + G+G KT VL Q VDTH+
Sbjct: 108 I--LLSEA--LIRDY--GGEVPGDRDELVKLPGVGRKTANVVLNMAFGQPTMAVDTHILR 161
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I IG P + L + IP+E + L HG+
Sbjct: 162 IGNRIGLAPGKTPEAVEAI-LVRVIPREYMLHAHHWLILHGR 202
>gi|22125970|ref|NP_669393.1| endonuclease III [Yersinia pestis KIM10+]
gi|45441837|ref|NP_993376.1| endonuclease III [Yersinia pestis biovar Microtus str. 91001]
gi|51596486|ref|YP_070677.1| endonuclease III [Yersinia pseudotuberculosis IP 32953]
gi|108807593|ref|YP_651509.1| endonuclease III [Yersinia pestis Antiqua]
gi|108811869|ref|YP_647636.1| endonuclease III [Yersinia pestis Nepal516]
gi|145598193|ref|YP_001162269.1| endonuclease III [Yersinia pestis Pestoides F]
gi|149365842|ref|ZP_01887877.1| endonuclease III [Yersinia pestis CA88-4125]
gi|153948366|ref|YP_001400876.1| endonuclease III [Yersinia pseudotuberculosis IP 31758]
gi|162419397|ref|YP_001606692.1| endonuclease III [Yersinia pestis Angola]
gi|165927359|ref|ZP_02223191.1| endonuclease III [Yersinia pestis biovar Orientalis str. F1991016]
gi|165938263|ref|ZP_02226822.1| endonuclease III [Yersinia pestis biovar Orientalis str. IP275]
gi|166010761|ref|ZP_02231659.1| endonuclease III [Yersinia pestis biovar Antiqua str. E1979001]
gi|166210692|ref|ZP_02236727.1| endonuclease III [Yersinia pestis biovar Antiqua str. B42003004]
gi|167400818|ref|ZP_02306324.1| endonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167420201|ref|ZP_02311954.1| endonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167424998|ref|ZP_02316751.1| endonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|167467741|ref|ZP_02332445.1| endonuclease III [Yersinia pestis FV-1]
gi|170024248|ref|YP_001720753.1| endonuclease III [Yersinia pseudotuberculosis YPIII]
gi|186895536|ref|YP_001872648.1| endonuclease III [Yersinia pseudotuberculosis PB1/+]
gi|218929335|ref|YP_002347210.1| endonuclease III [Yersinia pestis CO92]
gi|229894924|ref|ZP_04510102.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
[Yersinia pestis Pestoides A]
gi|229897667|ref|ZP_04512823.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
[Yersinia pestis biovar Orientalis str. PEXU2]
gi|229898312|ref|ZP_04513459.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
[Yersinia pestis biovar Orientalis str. India 195]
gi|229902171|ref|ZP_04517292.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
[Yersinia pestis Nepal516]
gi|270490644|ref|ZP_06207718.1| endonuclease III [Yersinia pestis KIM D27]
gi|294503728|ref|YP_003567790.1| endonuclease III [Yersinia pestis Z176003]
gi|384122556|ref|YP_005505176.1| endonuclease III [Yersinia pestis D106004]
gi|384125821|ref|YP_005508435.1| endonuclease III [Yersinia pestis D182038]
gi|384139933|ref|YP_005522635.1| endonuclease III [Yersinia pestis A1122]
gi|384414401|ref|YP_005623763.1| endonuclease III [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|420547131|ref|ZP_15045052.1| endonuclease III [Yersinia pestis PY-01]
gi|420552466|ref|ZP_15049818.1| endonuclease III [Yersinia pestis PY-02]
gi|420557999|ref|ZP_15054675.1| endonuclease III [Yersinia pestis PY-03]
gi|420563507|ref|ZP_15059558.1| endonuclease III [Yersinia pestis PY-04]
gi|420568534|ref|ZP_15064121.1| endonuclease III [Yersinia pestis PY-05]
gi|420574169|ref|ZP_15069223.1| endonuclease III [Yersinia pestis PY-06]
gi|420579504|ref|ZP_15074067.1| endonuclease III [Yersinia pestis PY-07]
gi|420584845|ref|ZP_15078912.1| endonuclease III [Yersinia pestis PY-08]
gi|420589966|ref|ZP_15083522.1| endonuclease III [Yersinia pestis PY-09]
gi|420595345|ref|ZP_15088362.1| endonuclease III [Yersinia pestis PY-10]
gi|420601005|ref|ZP_15093411.1| endonuclease III [Yersinia pestis PY-11]
gi|420606450|ref|ZP_15098306.1| endonuclease III [Yersinia pestis PY-12]
gi|420611842|ref|ZP_15103161.1| endonuclease III [Yersinia pestis PY-13]
gi|420617202|ref|ZP_15107867.1| endonuclease III [Yersinia pestis PY-14]
gi|420622499|ref|ZP_15112591.1| endonuclease III [Yersinia pestis PY-15]
gi|420627588|ref|ZP_15117204.1| endonuclease III [Yersinia pestis PY-16]
gi|420632709|ref|ZP_15121820.1| endonuclease III [Yersinia pestis PY-19]
gi|420637924|ref|ZP_15126496.1| endonuclease III [Yersinia pestis PY-25]
gi|420643419|ref|ZP_15131485.1| endonuclease III [Yersinia pestis PY-29]
gi|420648674|ref|ZP_15136261.1| endonuclease III [Yersinia pestis PY-32]
gi|420654318|ref|ZP_15141330.1| endonuclease III [Yersinia pestis PY-34]
gi|420659793|ref|ZP_15146256.1| endonuclease III [Yersinia pestis PY-36]
gi|420665125|ref|ZP_15151031.1| endonuclease III [Yersinia pestis PY-42]
gi|420670002|ref|ZP_15155462.1| endonuclease III [Yersinia pestis PY-45]
gi|420675358|ref|ZP_15160332.1| endonuclease III [Yersinia pestis PY-46]
gi|420680951|ref|ZP_15165398.1| endonuclease III [Yersinia pestis PY-47]
gi|420686240|ref|ZP_15170117.1| endonuclease III [Yersinia pestis PY-48]
gi|420691433|ref|ZP_15174702.1| endonuclease III [Yersinia pestis PY-52]
gi|420697217|ref|ZP_15179763.1| endonuclease III [Yersinia pestis PY-53]
gi|420702834|ref|ZP_15184390.1| endonuclease III [Yersinia pestis PY-54]
gi|420708475|ref|ZP_15189184.1| endonuclease III [Yersinia pestis PY-55]
gi|420713896|ref|ZP_15194032.1| endonuclease III [Yersinia pestis PY-56]
gi|420719366|ref|ZP_15198776.1| endonuclease III [Yersinia pestis PY-58]
gi|420724892|ref|ZP_15203583.1| endonuclease III [Yersinia pestis PY-59]
gi|420730497|ref|ZP_15208602.1| endonuclease III [Yersinia pestis PY-60]
gi|420735518|ref|ZP_15213146.1| endonuclease III [Yersinia pestis PY-61]
gi|420741001|ref|ZP_15218074.1| endonuclease III [Yersinia pestis PY-63]
gi|420746551|ref|ZP_15222847.1| endonuclease III [Yersinia pestis PY-64]
gi|420752138|ref|ZP_15227742.1| endonuclease III [Yersinia pestis PY-65]
gi|420757684|ref|ZP_15232346.1| endonuclease III [Yersinia pestis PY-66]
gi|420763185|ref|ZP_15237017.1| endonuclease III [Yersinia pestis PY-71]
gi|420768380|ref|ZP_15241694.1| endonuclease III [Yersinia pestis PY-72]
gi|420773414|ref|ZP_15246233.1| endonuclease III [Yersinia pestis PY-76]
gi|420778946|ref|ZP_15251126.1| endonuclease III [Yersinia pestis PY-88]
gi|420784542|ref|ZP_15256030.1| endonuclease III [Yersinia pestis PY-89]
gi|420789772|ref|ZP_15260689.1| endonuclease III [Yersinia pestis PY-90]
gi|420795274|ref|ZP_15265643.1| endonuclease III [Yersinia pestis PY-91]
gi|420800324|ref|ZP_15270180.1| endonuclease III [Yersinia pestis PY-92]
gi|420805717|ref|ZP_15275054.1| endonuclease III [Yersinia pestis PY-93]
gi|420811024|ref|ZP_15279837.1| endonuclease III [Yersinia pestis PY-94]
gi|420816596|ref|ZP_15284850.1| endonuclease III [Yersinia pestis PY-95]
gi|420821880|ref|ZP_15289611.1| endonuclease III [Yersinia pestis PY-96]
gi|420826969|ref|ZP_15294171.1| endonuclease III [Yersinia pestis PY-98]
gi|420832680|ref|ZP_15299334.1| endonuclease III [Yersinia pestis PY-99]
gi|420837534|ref|ZP_15303721.1| endonuclease III [Yersinia pestis PY-100]
gi|420842713|ref|ZP_15308414.1| endonuclease III [Yersinia pestis PY-101]
gi|420848358|ref|ZP_15313492.1| endonuclease III [Yersinia pestis PY-102]
gi|420853888|ref|ZP_15318254.1| endonuclease III [Yersinia pestis PY-103]
gi|420859222|ref|ZP_15322881.1| endonuclease III [Yersinia pestis PY-113]
gi|421763730|ref|ZP_16200523.1| endonuclease III [Yersinia pestis INS]
gi|21958913|gb|AAM85644.1|AE013810_7 endonuclease III [Yersinia pestis KIM10+]
gi|45436699|gb|AAS62253.1| endonuclease III [Yersinia pestis biovar Microtus str. 91001]
gi|51589768|emb|CAH21398.1| endonuclease III [Yersinia pseudotuberculosis IP 32953]
gi|108775517|gb|ABG18036.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Yersinia pestis Nepal516]
gi|108779506|gb|ABG13564.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Yersinia pestis Antiqua]
gi|115347946|emb|CAL20868.1| endonuclease III [Yersinia pestis CO92]
gi|145209889|gb|ABP39296.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Yersinia pestis Pestoides F]
gi|149292255|gb|EDM42329.1| endonuclease III [Yersinia pestis CA88-4125]
gi|152959861|gb|ABS47322.1| endonuclease III [Yersinia pseudotuberculosis IP 31758]
gi|162352212|gb|ABX86160.1| endonuclease III [Yersinia pestis Angola]
gi|165913924|gb|EDR32542.1| endonuclease III [Yersinia pestis biovar Orientalis str. IP275]
gi|165920625|gb|EDR37873.1| endonuclease III [Yersinia pestis biovar Orientalis str. F1991016]
gi|165990463|gb|EDR42764.1| endonuclease III [Yersinia pestis biovar Antiqua str. E1979001]
gi|166207872|gb|EDR52352.1| endonuclease III [Yersinia pestis biovar Antiqua str. B42003004]
gi|166961896|gb|EDR57917.1| endonuclease III [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167049671|gb|EDR61079.1| endonuclease III [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167056185|gb|EDR65963.1| endonuclease III [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|169750782|gb|ACA68300.1| endonuclease III [Yersinia pseudotuberculosis YPIII]
gi|186698562|gb|ACC89191.1| endonuclease III [Yersinia pseudotuberculosis PB1/+]
gi|229681067|gb|EEO77162.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
[Yersinia pestis Nepal516]
gi|229688602|gb|EEO80671.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
[Yersinia pestis biovar Orientalis str. India 195]
gi|229694004|gb|EEO84053.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
[Yersinia pestis biovar Orientalis str. PEXU2]
gi|229702019|gb|EEO90040.1| DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
[Yersinia pestis Pestoides A]
gi|262362152|gb|ACY58873.1| endonuclease III [Yersinia pestis D106004]
gi|262365485|gb|ACY62042.1| endonuclease III [Yersinia pestis D182038]
gi|270339148|gb|EFA49925.1| endonuclease III [Yersinia pestis KIM D27]
gi|294354187|gb|ADE64528.1| endonuclease III [Yersinia pestis Z176003]
gi|320014905|gb|ADV98476.1| endonuclease III [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|342855062|gb|AEL73615.1| endonuclease III [Yersinia pestis A1122]
gi|391425798|gb|EIQ88034.1| endonuclease III [Yersinia pestis PY-01]
gi|391427389|gb|EIQ89479.1| endonuclease III [Yersinia pestis PY-02]
gi|391428302|gb|EIQ90294.1| endonuclease III [Yersinia pestis PY-03]
gi|391441138|gb|EIR01651.1| endonuclease III [Yersinia pestis PY-04]
gi|391442786|gb|EIR03159.1| endonuclease III [Yersinia pestis PY-05]
gi|391446262|gb|EIR06320.1| endonuclease III [Yersinia pestis PY-06]
gi|391458349|gb|EIR17221.1| endonuclease III [Yersinia pestis PY-07]
gi|391459268|gb|EIR18067.1| endonuclease III [Yersinia pestis PY-08]
gi|391461516|gb|EIR20121.1| endonuclease III [Yersinia pestis PY-09]
gi|391474365|gb|EIR31662.1| endonuclease III [Yersinia pestis PY-10]
gi|391475975|gb|EIR33132.1| endonuclease III [Yersinia pestis PY-11]
gi|391476741|gb|EIR33838.1| endonuclease III [Yersinia pestis PY-12]
gi|391490328|gb|EIR45992.1| endonuclease III [Yersinia pestis PY-13]
gi|391491379|gb|EIR46938.1| endonuclease III [Yersinia pestis PY-15]
gi|391493436|gb|EIR48790.1| endonuclease III [Yersinia pestis PY-14]
gi|391505831|gb|EIR59809.1| endonuclease III [Yersinia pestis PY-16]
gi|391506793|gb|EIR60688.1| endonuclease III [Yersinia pestis PY-19]
gi|391511187|gb|EIR64628.1| endonuclease III [Yersinia pestis PY-25]
gi|391521656|gb|EIR74111.1| endonuclease III [Yersinia pestis PY-29]
gi|391523972|gb|EIR76242.1| endonuclease III [Yersinia pestis PY-34]
gi|391525118|gb|EIR77284.1| endonuclease III [Yersinia pestis PY-32]
gi|391537216|gb|EIR88130.1| endonuclease III [Yersinia pestis PY-36]
gi|391539854|gb|EIR90543.1| endonuclease III [Yersinia pestis PY-42]
gi|391541818|gb|EIR92335.1| endonuclease III [Yersinia pestis PY-45]
gi|391555074|gb|EIS04271.1| endonuclease III [Yersinia pestis PY-46]
gi|391555497|gb|EIS04665.1| endonuclease III [Yersinia pestis PY-47]
gi|391556615|gb|EIS05686.1| endonuclease III [Yersinia pestis PY-48]
gi|391570220|gb|EIS17713.1| endonuclease III [Yersinia pestis PY-52]
gi|391570855|gb|EIS18276.1| endonuclease III [Yersinia pestis PY-53]
gi|391578330|gb|EIS24621.1| endonuclease III [Yersinia pestis PY-54]
gi|391583530|gb|EIS29180.1| endonuclease III [Yersinia pestis PY-55]
gi|391586527|gb|EIS31821.1| endonuclease III [Yersinia pestis PY-56]
gi|391598035|gb|EIS41803.1| endonuclease III [Yersinia pestis PY-58]
gi|391599714|gb|EIS43310.1| endonuclease III [Yersinia pestis PY-60]
gi|391601470|gb|EIS44894.1| endonuclease III [Yersinia pestis PY-59]
gi|391614311|gb|EIS56192.1| endonuclease III [Yersinia pestis PY-61]
gi|391614856|gb|EIS56686.1| endonuclease III [Yersinia pestis PY-63]
gi|391619529|gb|EIS60784.1| endonuclease III [Yersinia pestis PY-64]
gi|391626676|gb|EIS66993.1| endonuclease III [Yersinia pestis PY-65]
gi|391635053|gb|EIS74256.1| endonuclease III [Yersinia pestis PY-66]
gi|391637724|gb|EIS76608.1| endonuclease III [Yersinia pestis PY-71]
gi|391640233|gb|EIS78811.1| endonuclease III [Yersinia pestis PY-72]
gi|391649814|gb|EIS87167.1| endonuclease III [Yersinia pestis PY-76]
gi|391653983|gb|EIS90856.1| endonuclease III [Yersinia pestis PY-88]
gi|391658921|gb|EIS95276.1| endonuclease III [Yersinia pestis PY-89]
gi|391662745|gb|EIS98652.1| endonuclease III [Yersinia pestis PY-90]
gi|391670582|gb|EIT05607.1| endonuclease III [Yersinia pestis PY-91]
gi|391680227|gb|EIT14296.1| endonuclease III [Yersinia pestis PY-93]
gi|391681549|gb|EIT15500.1| endonuclease III [Yersinia pestis PY-92]
gi|391682254|gb|EIT16148.1| endonuclease III [Yersinia pestis PY-94]
gi|391694046|gb|EIT26747.1| endonuclease III [Yersinia pestis PY-95]
gi|391697311|gb|EIT29715.1| endonuclease III [Yersinia pestis PY-96]
gi|391698765|gb|EIT31030.1| endonuclease III [Yersinia pestis PY-98]
gi|391709181|gb|EIT40382.1| endonuclease III [Yersinia pestis PY-99]
gi|391714755|gb|EIT45385.1| endonuclease III [Yersinia pestis PY-100]
gi|391715334|gb|EIT45892.1| endonuclease III [Yersinia pestis PY-101]
gi|391726081|gb|EIT55477.1| endonuclease III [Yersinia pestis PY-102]
gi|391729449|gb|EIT58443.1| endonuclease III [Yersinia pestis PY-103]
gi|391734621|gb|EIT62872.1| endonuclease III [Yersinia pestis PY-113]
gi|411175828|gb|EKS45852.1| endonuclease III [Yersinia pestis INS]
Length = 213
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T+ + KA A L T + +L ++ I+ GL TKA +N+
Sbjct: 33 LISVLLSAQATDVSVNKATARLYPVANTPQAILDLGVDGLKEYIKTIGLYNTKA---ENV 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K ++ LE +G + E +A L G+G KT VL VDTH+F
Sbjct: 90 IKTC-----RILLEKHQG-EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESA 265
+ G+ P ++ ++ L + +P E K D + L HG+ CI RK
Sbjct: 144 VCNRTGFAP-GSNVDQVEEKLLKVVPAEFKLDCHHWLILHGRY--TCI------ARKPRC 194
Query: 266 GNLCPLLNYCEKSNKT 281
G+ C + + CE K
Sbjct: 195 GS-CIIEDLCEFKEKV 209
>gi|406903824|gb|EKD45786.1| hypothetical protein ACD_69C00136G0003 [uncultured bacterium]
Length = 210
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 83/199 (41%), Gaps = 25/199 (12%)
Query: 65 NSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKC 124
+S+P N E S + L+ +LS TT+ K +SL + T E +L K
Sbjct: 15 SSIP---NPTTELNYNSNFELLIAVMLSARTTDKTVNKITSSLFAIANTPEKILKLGIKE 71
Query: 125 IENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLS--IDEIKAELSRFRGIGPK 182
I+ I+ G TKA KNI K C ++ + I + + EL G+G K
Sbjct: 72 IKKHIKSSGFFNTKA---KNI--------AKTCEILVKNFNSQIPKTREELETLPGVGRK 120
Query: 183 TVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLL 242
T +L Q VDTHVF ++ IG + + L + IPK+ LL
Sbjct: 121 TANVILNIAFNQPTIAVDTHVFRVANRIG-IAQGKTPEEIETKLLKIIPKKFAKTAGNLL 179
Query: 243 YTHGKL--------CRNCI 253
HG+ C++C+
Sbjct: 180 ILHGRYTCIAQKPKCKSCV 198
>gi|389685832|ref|ZP_10177155.1| endonuclease III [Pseudomonas chlororaphis O6]
gi|399005502|ref|ZP_10708082.1| endonuclease III [Pseudomonas sp. GM17]
gi|425901222|ref|ZP_18877813.1| endonuclease III [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|388550174|gb|EIM13444.1| endonuclease III [Pseudomonas chlororaphis O6]
gi|397883764|gb|EJL00251.1| endonuclease III [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|398125990|gb|EJM15443.1| endonuclease III [Pseudomonas sp. GM17]
Length = 212
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS +T+ KA A L T + A + + I+ GL +KA
Sbjct: 28 SPFELLIAVILSAQSTDVGVNKATAKLFPVANTPAAIYALGVEGLSEYIKTIGLYNSKAK 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + L+E + + + EL G+G KT VL +Q VD
Sbjct: 88 NVIETCRLLVERHNS---------EVPQTREELEALPGVGRKTANVVLNTAFRQLTMAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S G P + + L + +PKE D + L HG+ C+
Sbjct: 139 THIFRVSNRTGLAP-GKNVVEVEKKLMKFVPKEYLLDSHHWLILHGRYV--CL------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPRCGS-CRIEDLCEYKHKT 209
>gi|323344306|ref|ZP_08084532.1| endonuclease III [Prevotella oralis ATCC 33269]
gi|323095035|gb|EFZ37610.1| endonuclease III [Prevotella oralis ATCC 33269]
Length = 216
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 21/199 (10%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S LV T+LS T+ + +L +PT + + AE + + I+ K+
Sbjct: 29 SAFQLLVSTLLSAQCTDKRINQITPALFRRYPTPQEMAKAEVEDVLEYIKTVSYPNAKSK 88
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + + +++ G + + E EL++ G+G KT + + VD
Sbjct: 89 HLVEMARMIVDDFGGI---------VPETMEELTKLPGVGRKTANVLQAVWFGKATMAVD 139
Query: 201 THVFEISKAIGWVP-TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGN 258
THV+ +S +G VP TA K L + IPKE D + L HG+ +C + I K
Sbjct: 140 THVYRVSHRLGLVPKTANTPYKVERELLRNIPKEDVPDAHHWLLLHGRYVCLSRIPKCPE 199
Query: 259 RQRKESAGNLCPLLNYCEK 277
CP ++C K
Sbjct: 200 ----------CPFGSFCPK 208
>gi|240137162|ref|YP_002961631.1| endonuclease III [Methylobacterium extorquens AM1]
gi|418063281|ref|ZP_12700981.1| endonuclease III [Methylobacterium extorquens DSM 13060]
gi|240007128|gb|ACS38354.1| endonuclease III DNA glycosylase/apyrimidinic (AP) lyase
[Methylobacterium extorquens AM1]
gi|373560340|gb|EHP86606.1| endonuclease III [Methylobacterium extorquens DSM 13060]
Length = 233
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+ + A A L + T + +L ++ + + IR GL TKA + +
Sbjct: 47 LVAVVLSAQATDKSVNLATAPLFAIADTPQKMLDLGEEQVRHFIRTIGLFNTKAKNVIAL 106
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G G E +A L G+G KT + VL VDTH+F
Sbjct: 107 SRILLERHG--------GAVPCEAEA-LEVLPGVGTKTASVVLNVAFGVPRIAVDTHIFR 157
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCR 250
+S I +AA ++ L R+P+ + + + L HG+ +C+
Sbjct: 158 VSNRIPLF-SAATTDRVQAGLEARVPEPFRLNAHHWLILHGRYICK 202
>gi|253702180|ref|YP_003023369.1| HhH-GPD family protein [Geobacter sp. M21]
gi|251777030|gb|ACT19611.1| HhH-GPD family protein [Geobacter sp. M21]
Length = 228
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 25/197 (12%)
Query: 87 VKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE------QKCIENAIRCGGLAPTKAA 140
V +L+QNT N KA +LK E +L+AE + + +IR G K+A
Sbjct: 41 VGAILTQNTNWLNVEKAIVNLKR-----EGLLSAEALREIDEGRLAESIRPSGFFNVKSA 95
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+K ++ LLE G L + + ++ ELS RGIGP+T +L++ + F VD
Sbjct: 96 RLKGFVEWLLERYGSL--DAMFEGDWVRLREELSAVRGIGPETCDSILLYAGGKPSFVVD 153
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTHGKLCRNCIKKGGN 258
+ + +G V D ++ +P ++ + + L+ K R+C
Sbjct: 154 AYTRRLFSRLGLVREEDDYHQVRALFMDHLPAKVPLFNEYHALIVEQCK--RHC------ 205
Query: 259 RQRKESAGNLCPLLNYC 275
RK+ CPL +C
Sbjct: 206 --RKKPLCEGCPLSRFC 220
>gi|429096143|ref|ZP_19158249.1| Endonuclease III [Cronobacter dublinensis 582]
gi|426282483|emb|CCJ84362.1| Endonuclease III [Cronobacter dublinensis 582]
Length = 211
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T + +LA ++ I+ GL +KA
Sbjct: 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPKAMLALGVDGVKEYIKTIGLFNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
+ + L+E G + E +A L G+G KT VL VD
Sbjct: 88 NVIKTCRILIEQHGG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F +S + P + L + +P E K D + L HG+ CI
Sbjct: 139 THIFRVSNRTKFAP-GKNVEAVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE ++K
Sbjct: 190 RKPRCGS-CIIEDLCEYADKV 209
>gi|320546504|ref|ZP_08040819.1| endonuclease III [Streptococcus equinus ATCC 9812]
gi|320448889|gb|EFW89617.1| endonuclease III [Streptococcus equinus ATCC 9812]
Length = 216
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 26/195 (13%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS TT+ K +L +P E + A +E+ +R GL KA KNI
Sbjct: 35 LVAVILSAQTTDKAVNKVTPNLWKKYPEIEDLAMANLSDVEDCLRAIGLYKNKA---KNI 91
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+K + L+ G + + EL G+G KT VL VDTHV
Sbjct: 92 IKT-----ARAILQDFDG-KVPKTHKELETLPGVGRKTANVVLAEVYGVPSIAVDTHVSR 145
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLC----RNCIKKGGNRQR 261
I+K + AD + L ++IPK+ + TH +L +C+ K N
Sbjct: 146 IAKRLNISAPDADVKEIEQDLMKKIPKK------DWILTHHRLIFFGRYHCLAKKPN--- 196
Query: 262 KESAGNLCPLLNYCE 276
++CP+ YC+
Sbjct: 197 ----CDICPVQTYCK 207
>gi|15614261|ref|NP_242564.1| endonuclease III [Bacillus halodurans C-125]
gi|10174315|dbj|BAB05417.1| endonuclease III (DNA repair) [Bacillus halodurans C-125]
Length = 218
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 81/196 (41%), Gaps = 20/196 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ VLS T+A K L + + T E +A + +E IR GL KA IK +
Sbjct: 34 LIAVVLSAQCTDALVNKVTPRLFAKYKTPEDYIAVPLEELEQDIRSIGLYRNKAKNIKKL 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LLE G + + + EL + G+G KT V VDTHV
Sbjct: 94 CQSLLEQYGG---------EVPQDRDELVKLAGVGRKTANVVASVAFGVPAIAVDTHVER 144
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIP-KELKFDLNCLLYTHGKLCRNCIKKGGNRQRKES 264
+SK +G + + L ++IP E + L++ C K N Q
Sbjct: 145 VSKRLGICRWKDNVTQVEQTLMKKIPMDEWSISHHRLIFFGRYHC-----KAQNPQ---- 195
Query: 265 AGNLCPLLNYCEKSNK 280
++CPLL+ C + K
Sbjct: 196 -CDICPLLDMCREGKK 210
>gi|23501077|ref|NP_697204.1| endonuclease III [Brucella suis 1330]
gi|161618154|ref|YP_001592041.1| endonuclease III [Brucella canis ATCC 23365]
gi|163842435|ref|YP_001626839.1| endonuclease III [Brucella suis ATCC 23445]
gi|260567197|ref|ZP_05837667.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|261756055|ref|ZP_05999764.1| endonuclease III [Brucella suis bv. 3 str. 686]
gi|376279865|ref|YP_005153871.1| endonuclease III [Brucella suis VBI22]
gi|384223859|ref|YP_005615023.1| endonuclease III [Brucella suis 1330]
gi|23346945|gb|AAN29119.1| endonuclease III [Brucella suis 1330]
gi|161334965|gb|ABX61270.1| endonuclease III [Brucella canis ATCC 23365]
gi|163673158|gb|ABY37269.1| endonuclease III [Brucella suis ATCC 23445]
gi|260156715|gb|EEW91795.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|261745808|gb|EEY33734.1| endonuclease III [Brucella suis bv. 3 str. 686]
gi|343382039|gb|AEM17531.1| endonuclease III [Brucella suis 1330]
gi|358257464|gb|AEU05199.1| endonuclease III [Brucella suis VBI22]
Length = 248
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA +L + T + +LA ++ + IR GL KA KNI
Sbjct: 60 LVAVVLSAQATDAGVNKATRALFAVADTPQKMLALGEEKVGEYIRTIGLWRNKA---KNI 116
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L E+ L +Y G + + EL + G+G KT VL Q VDTH+
Sbjct: 117 I-LLSEA---LIRDY--GGEVPGDRDELVKLPGVGRKTANVVLNMAFGQPTMAVDTHILR 170
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I IG P + L + IP+E + L HG+
Sbjct: 171 IGNRIGLAPGKTPEAVEAI-LVRVIPREYMLHAHHWLILHGR 211
>gi|237814635|ref|ZP_04593633.1| endonuclease III [Brucella abortus str. 2308 A]
gi|237789472|gb|EEP63682.1| endonuclease III [Brucella abortus str. 2308 A]
Length = 260
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA +L + T + +LA ++ + IR GL KA KN+
Sbjct: 72 LVAVVLSAQATDAGVNKATRALFAVADTPQKMLALGEEKVGEYIRTIGLWRNKA---KNV 128
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L E+ L +Y G + + EL + G+G KT VL Q VDTH+
Sbjct: 129 I-LLSEA---LIRDY--GGEVPGDRDELMKLPGVGRKTANVVLNMAFGQPTMAVDTHILR 182
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I IG P + L + IP+E + L HG+
Sbjct: 183 IGNRIGLAPGKTPEAVEAI-LVRVIPREYMLHAHHWLILHGR 223
>gi|386010752|ref|YP_005929029.1| Endonuclease III [Pseudomonas putida BIRD-1]
gi|313497458|gb|ADR58824.1| Endonuclease III [Pseudomonas putida BIRD-1]
Length = 212
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 29/201 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV LS +T+ KA A L T E + A + + I+ GL +KA +
Sbjct: 33 LVAVTLSAQSTDVGVNKATARLFPVANTPEAIHALGVEGLSEYIKTIGLYNSKAKNVIET 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E + + + L G+G KT VL +Q VDTH+F
Sbjct: 93 CRLLIERHDS---------QVPQTREALEALPGVGRKTANVVLNTAFRQPAMAVDTHIFR 143
Query: 206 ISKAIGWVPTAADRNKTYLHLNQR----IPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
+S G P KT L + ++ +PK+ D + L HG+ +C +
Sbjct: 144 VSNRTGIAP-----GKTVLEVEKKLVKFVPKDYLLDAHHWLILHGRYVC---------QA 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE +KT
Sbjct: 190 RKPRCGS-CRIEDLCEYKHKT 209
>gi|357419554|ref|YP_004932546.1| DNA-3-methyladenine glycosylase III [Thermovirga lienii DSM 17291]
gi|355397020|gb|AER66449.1| DNA-3-methyladenine glycosylase III [Thermovirga lienii DSM 17291]
Length = 219
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 7/169 (4%)
Query: 87 VKTVLSQNTTEANSLKAFASLK-STFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
+ +L+QNT +N KA +LK + + +A ++ IE ++ G KA + +
Sbjct: 31 IGAILTQNTNWSNVEKALMNLKRKGLLSISSIASAPKEIIEECLKPAGTYRRKALYLMDF 90
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K ++ G C+E L L ++ + L + +GIGP+T +L + +D +
Sbjct: 91 SKQVISQLG--CIEKLFTLGPNKARKWLLKQKGIGPETADSILCYGGNFPLLVIDAYTLR 148
Query: 206 ISKAIGWV-PTAADRNKTYLHLNQRIPKELKF--DLNCLLYTHGK-LCR 250
+ K +GW+ P +K L +PK+ K + + L+ H K +CR
Sbjct: 149 LGKRMGWLSPEINSYDKAQEELQLYLPKDPKVLGEFHALIVKHSKEICR 197
>gi|254372990|ref|ZP_04988479.1| hypothetical protein FTCG_00563 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570717|gb|EDN36371.1| hypothetical protein FTCG_00563 [Francisella novicida GA99-3549]
Length = 212
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E S + L+ +LS T+ KA L T E + A ++ + I+ GL
Sbjct: 23 ELEYTSNFELLIAVILSAQATDVGVNKATKVLFKVANTPEQIYALGEQKLAEYIKSIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA + + L+E G + + +L G+G KT VL +
Sbjct: 83 KTKAKNVIATCRDLIEKFGSIVPDNFD---------DLISLAGVGRKTANVVLNTAFGKP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRNKTYLH--LNQRIPKELKFDLNCLLYTHGKL----- 248
VDTH+F ++ I P A +N + L + IPKE D + + HG+
Sbjct: 134 TMAVDTHIFRLANRI---PLAKGKNVNEVEKKLLRVIPKEYLHDAHHWIILHGRYICTAQ 190
Query: 249 ---CRNCI 253
CRNCI
Sbjct: 191 RPKCRNCI 198
>gi|148559865|ref|YP_001258197.1| endonuclease III [Brucella ovis ATCC 25840]
gi|225626703|ref|ZP_03784742.1| endonuclease III [Brucella ceti str. Cudo]
gi|148371122|gb|ABQ61101.1| endonuclease III [Brucella ovis ATCC 25840]
gi|225618360|gb|EEH15403.1| endonuclease III [Brucella ceti str. Cudo]
Length = 260
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 10/162 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV VLS T+A KA +L + T + +LA ++ + IR GL KA KN+
Sbjct: 72 LVAVVLSAQATDAGVNKATRALFAVADTPQKMLALGEEKVGEYIRTIGLWRNKA---KNV 128
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L E+ L +Y G + + EL + G+G KT VL Q VDTH+
Sbjct: 129 I-LLSEA---LIRDY--GGEVPGDRDELVKLPGVGRKTANVVLNMAFGQPTMAVDTHILR 182
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I IG P + L + IP+E + L HG+
Sbjct: 183 IGNRIGLAPGKTPEAVEAI-LVRVIPREYMLHAHHWLILHGR 223
>gi|317047957|ref|YP_004115605.1| endonuclease III [Pantoea sp. At-9b]
gi|316949574|gb|ADU69049.1| endonuclease III [Pantoea sp. At-9b]
Length = 210
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 88/220 (40%), Gaps = 24/220 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD+N P E S + L+ +LS T+ + KA A L T +LA
Sbjct: 14 RDENPHP-----TTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPASLLALG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
++ I+ GL +KA + + LLE G + E +A L G+G
Sbjct: 69 VDGVKEYIKTIGLFNSKAENVIKTCRILLEQHGS---------EVPEDRAALEALPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL VDTH+F +S + P + + L + +PK K D +
Sbjct: 120 KTANVVLNTAFGWPTIAVDTHIFRVSNRTRFAP-GKNVEEVEEKLLKVVPKAFKVDCHHW 178
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ C+ RK G+ C + + CE KT
Sbjct: 179 LILHGRY--TCV------ARKPRCGS-CLIEDLCEFDAKT 209
>gi|392541003|ref|ZP_10288140.1| endonuclease III [Pseudoalteromonas piscicida JCM 20779]
Length = 211
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 87/220 (39%), Gaps = 24/220 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
RD+N P EY S + LV LS T+ KA L T E +L
Sbjct: 14 RDENPHPETELEYS-----SPFELLVAVTLSAQATDVGVNKATRKLFPVANTPEKILELG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
+ + + I+ GL +KA + + + L++ G + E + L G+G
Sbjct: 69 LEGLRDYIKTIGLFNSKANNVYKMCQILVDKHGS---------EVPENREALEALPGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL VDTH+F +S + D L + +PKE K D++
Sbjct: 120 KTANVVLNCAFGWPTIAVDTHIFRVSNRTKFA-MGKDVVAVEQKLEKVVPKEFKVDVHHW 178
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ C+ RK G+ C + + CE KT
Sbjct: 179 LILHGRYV--CV------ARKPKCGS-CIIEDLCEFKEKT 209
>gi|398811764|ref|ZP_10570553.1| endonuclease III [Variovorax sp. CF313]
gi|398079854|gb|EJL70692.1| endonuclease III [Variovorax sp. CF313]
Length = 215
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 18/192 (9%)
Query: 64 KNSVPL------DMNEYDEGEEE--SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWE 115
KN +PL N E E E + + L +LS T+ KA L T +
Sbjct: 3 KNDIPLFFATLQAANPEPETELEYTTPFELLAAVLLSAQATDVGVNKATRKLYPVANTPQ 62
Query: 116 HVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSR 175
+L + +E I+ GL +KA + + L+E L G + +AEL
Sbjct: 63 AILDLGVEGLEEYIKTIGLYRSKARHLIEACRMLVE---------LHGGEVPRTRAELEA 113
Query: 176 FRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELK 235
G+G KT VL + VDTH+F + G P + L L +R+P E +
Sbjct: 114 LPGVGRKTANVVLNVAFGEPTMAVDTHIFRVGNRTGLAPGKTPL-EVELKLEKRVPPEYQ 172
Query: 236 FDLNCLLYTHGK 247
+ L HG+
Sbjct: 173 LHAHHWLILHGR 184
>gi|418323844|ref|ZP_12935104.1| endonuclease III [Staphylococcus pettenkoferi VCU012]
gi|365229081|gb|EHM70248.1| endonuclease III [Staphylococcus pettenkoferi VCU012]
Length = 220
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 18/194 (9%)
Query: 87 VKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146
+ +LS TT+ + K A L + T E L Q+ +EN IR GL KA I+ +
Sbjct: 35 IAVLLSAQTTDNSVNKVTAKLFQKYHTAEDFLQVPQEELENDIRTIGLYRNKAKNIQKLC 94
Query: 147 KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEI 206
+ LL+ G I EL G+G KT V+ + VDTHV +
Sbjct: 95 RSLLDK--------FNG-EIPRTHKELESLAGVGRKTANVVMSVAFDEPSLAVDTHVERV 145
Query: 207 SKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAG 266
SK +G + + L + +P+E + L G+ +C+ +
Sbjct: 146 SKRLGICRWKDNVRQVEEKLCKVVPRERWNRTHHQLIFFGRY--HCLARA-------PKC 196
Query: 267 NLCPLLNYCEKSNK 280
++CPL + C + K
Sbjct: 197 DVCPLFDDCREGQK 210
>gi|337755580|ref|YP_004648091.1| Endonuclease III [Francisella sp. TX077308]
gi|336447185|gb|AEI36491.1| Endonuclease III [Francisella sp. TX077308]
Length = 212
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 78/191 (40%), Gaps = 28/191 (14%)
Query: 76 EGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLA 135
E E S + L+ +LS T+ + KA L T E + A ++ + I+ GL
Sbjct: 23 ELEYSSNFELLIAVILSAQATDVSVNKATQVLYKIANTPEQIYALGEQKLAQYIKSIGLY 82
Query: 136 PTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQD 195
TKA + K L+E + + +L G+G KT VL Q
Sbjct: 83 KTKAKNVITTCKDLIEKFDS---------QVPDNFDDLISLAGVGRKTANVVLNTAFNQP 133
Query: 196 DFPVDTHVFEISKAIGWVPTAADRN-----KTYLHLNQRIPKELKFDLNCLLYTHGKL-- 248
VDTH+F ++ I P A +N K LH+ IPK+ D + + HG+
Sbjct: 134 TMAVDTHIFRLANRI---PLAKGKNVNEVEKKLLHV---IPKQYLQDAHHWIILHGRYIC 187
Query: 249 ------CRNCI 253
CRNCI
Sbjct: 188 TAQKPKCRNCI 198
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,360,778,300
Number of Sequences: 23463169
Number of extensions: 173854047
Number of successful extensions: 391780
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 3897
Number of HSP's that attempted gapping in prelim test: 388704
Number of HSP's gapped (non-prelim): 4731
length of query: 281
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 140
effective length of database: 9,050,888,538
effective search space: 1267124395320
effective search space used: 1267124395320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)