BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023471
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING ADENINE Opposite To 8-Oxog
Length = 291
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 154 GKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHV 203
G+L LEY++ L+ +E EL +F G+GP+ C+++F +Q+ FPVDT V
Sbjct: 194 GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWV 244
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING CYTOSINE Opposite To 8-Oxog
Length = 290
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 154 GKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHV 203
G+L LEY++ L+ +E EL +F G+GP+ C+++F +Q+ FPVDT V
Sbjct: 194 GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWV 244
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine Dna Glycosylase In Complex With
8-Oxoguanosine
Length = 292
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 154 GKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHV 203
G+L LEY++ L+ +E EL +F G+GP+ C+++F +Q+ FPVDT V
Sbjct: 194 GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWV 244
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN ITS APO-Form
Length = 292
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 154 GKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHV 203
G+L LEY++ L+ +E EL +F G+GPK C+ +F Q+ FPVDT V
Sbjct: 194 GELNLEYIKSLNDNECHEELKKFXGVGPKVADCIXLFSXQKYSAFPVDTWV 244
>pdb|2ABK|A Chain A, Refinement Of The Native Structure Of Endonuclease Iii To
A Resolution Of 1.85 Angstrom
Length = 211
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 79/201 (39%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T +L + ++ I+ GL +KA
Sbjct: 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
I + LLE + E +A L G+G KT VL VD
Sbjct: 88 NIIKTCRILLEQHNG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F + + P + + L + +P E K D + L HG+ CI
Sbjct: 139 THIFRVCNRTQFAP-GKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE K
Sbjct: 190 RKPRCGS-CIIEDLCEYKEKV 209
>pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Guanine Complex
pdb|1ORP|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Adenine Complex
Length = 226
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 15/151 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ VLS T+A K L + T +A + +E IR GL KA I+ +
Sbjct: 37 LIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKL 96
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L++ + + EL + G+G KT V+ VDTHV
Sbjct: 97 CAMLIDKYNG---------EVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVER 147
Query: 206 ISKAIG---WVPTAADRNKTYLHLNQRIPKE 233
+SK +G W + + KT + + IPKE
Sbjct: 148 VSKRLGFCRWDDSVLEVEKTLMKI---IPKE 175
>pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex
Length = 226
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 15/151 (9%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ VLS T+A K L + T +A + +E IR GL KA I+ +
Sbjct: 37 LIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKL 96
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L++ + + EL + G+G KT V+ VDTHV
Sbjct: 97 CAMLIDKYNG---------EVPRDRDELMKLPGVGRKTANVVVSTAFGVPAIAVDTHVER 147
Query: 206 ISKAIG---WVPTAADRNKTYLHLNQRIPKE 233
+SK +G W + + KT + + IPKE
Sbjct: 148 VSKRLGFCRWDDSVLEVEKTLMKI---IPKE 175
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase
Hogg1
Length = 345
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 181 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 236
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G K C+ + L + PVD H++ I+ + W PT +
Sbjct: 237 HKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 286
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped
Intermediate Complex
pdb|1LWV|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Aminoguanine
pdb|1LWW|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Bromoguanine
pdb|1LWY|A Chain A, Hogg1 Borohydride-Trapped Intermediate Without
8-Oxoguanine
Length = 324
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 178 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 233
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G K C+ + L + PVD H++ I+ + W PT +
Sbjct: 234 HKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 283
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human
Base-Excision Dna Repair Protein
Length = 317
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 173 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 228
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G K C+ + L + PVD H++ I+ + W PT +
Sbjct: 229 HKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 278
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine
Containing Dna
Length = 319
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 173 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 228
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G K C+ + L + PVD H++ I+ + W PT +
Sbjct: 229 HKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 278
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To
Fluorninated Oxog-Containing Dna
Length = 317
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 173 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 228
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G K C+ + L + PVD H++ I+ + W PT +
Sbjct: 229 HKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 278
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human
8-Oxoguanine Glycosylase Distally Crosslinked To
Guanine-Containing Dna
Length = 316
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 172 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 227
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G K C+ + L + PVD H++ I+ + W PT +
Sbjct: 228 HKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 277
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal
Crosslink To 8-Oxoguanine Dna
Length = 325
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 179 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 234
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G K C+ + L + PVD H++ I+ + W PT +
Sbjct: 235 HKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 284
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal
Crosslink To 8-oxoguanine Dna
Length = 325
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 179 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 234
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G K C+ + L + PVD H++ I+ + W PT +
Sbjct: 235 HKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 284
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G
Adjacent To An Oxog
Length = 315
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 173 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 228
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G K C+ + L + PVD H++ I+ + W PT +
Sbjct: 229 HKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 278
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase
(Hogg1) Bound To A Substrate Oligonucleotide
Length = 317
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 173 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 228
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G + C+ + L + PVD H++ I+ + W PT +
Sbjct: 229 HKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 278
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8-
Azaguanine Containing Dna
pdb|1YQM|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To 7-Deazaguanine Containing Dna
pdb|1YQR|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To Oxog Containing Dna
Length = 319
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 173 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 228
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G + C+ + L + PVD H++ I+ + W PT +
Sbjct: 229 HKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 278
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine
Glycosylase Distal Crosslink To Oxog Dna
Length = 325
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 179 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 234
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G + C+ + L + PVD H++ I+ + W PT +
Sbjct: 235 HKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 284
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human
8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna
Length = 325
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 179 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 234
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G + C+ + L + PVD H++ I+ + W PT +
Sbjct: 235 HKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 284
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8-
Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna
Length = 325
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 179 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 234
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G + C+ + L + PVD H++ I+ + W PT +
Sbjct: 235 HKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 284
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase
Crosslinked To Undamaged G-Containing Dna
Length = 325
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 179 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 234
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G + C+ + L + PVD H++ I+ + W PT +
Sbjct: 235 HKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 284
>pdb|1N39|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
pdb|1M3Q|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Base-Excised
Dna And 8-Aminoguanine
pdb|1M3H|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Product
Oligonucleotide
Length = 317
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 173 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 228
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G K C+ + L + PV+ H++ I+ + W PT +
Sbjct: 229 HKALCILPGVGTKVADCICLMALDKPQAVPVEVHMWHIAQRDYSWHPTTS 278
>pdb|1N3C|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-oxoguanine Glycosylase
Length = 317
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 173 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 228
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G K C+ + L + PV+ H++ I+ + W PT +
Sbjct: 229 HKALCILPGVGTKVADCICLMALDKPQAVPVNVHMWHIAQRDYSWHPTTS 278
>pdb|1N3A|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
Length = 317
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 173 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 228
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G K C+ + L + PV H++ I+ + W PT +
Sbjct: 229 HKALCILPGVGTKVADCICLMALDKPQAVPVQVHMWHIAQRDYSWHPTTS 278
>pdb|3S6I|A Chain A, Schizosaccaromyces Pombe 3-Methyladenine Dna Glycosylase
(Mag1) In Complex With Abasic-Dna.
pdb|3S6I|D Chain D, Schizosaccaromyces Pombe 3-Methyladenine Dna Glycosylase
(Mag1) In Complex With Abasic-Dna
Length = 228
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKST-----FPTWEHVLAAEQKCIENAIRCG 132
E++ + L++ V SQ + F KS FPT E + + + + R
Sbjct: 46 EKKEPYEELIRAVASQQLHSKAANAIFNRFKSISNNGQFPTPEEIRDMDFEIM----RAC 101
Query: 133 GLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHL 192
G + K +K+I + + E R LS +E+ L++ +GIG TV +L+F L
Sbjct: 102 GFSARKIDSLKSIAEATISGLIPTKEEAER-LSNEELIERLTQIKGIGRWTVEMLLIFSL 160
Query: 193 QQDD-FPVD 200
+DD P D
Sbjct: 161 NRDDVMPAD 169
>pdb|3FSP|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With Dg In Duplexed Dna
pdb|3FSQ|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With D(8-Oxog) In Duplexed Dna
Length = 369
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 10/120 (8%)
Query: 87 VKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146
V V+ Q T + F FPT E + A++ + A G + ++N+
Sbjct: 44 VSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYY----SRVRNLH 99
Query: 147 KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEI 206
+ E K + G + + E SR +G+GP TV VL + VD +V +
Sbjct: 100 AAVKEVKTRY------GGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRV 153
>pdb|3G0Q|A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna
Length = 352
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 10/120 (8%)
Query: 87 VKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146
V V+ Q T + F FPT E + A++ + A G + ++N+
Sbjct: 33 VSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYY----SRVRNLH 88
Query: 147 KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEI 206
+ E K + G + + E SR +G+GP TV VL + VD +V +
Sbjct: 89 AAVKEVKTRY------GGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRV 142
>pdb|1RRS|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
Abasic Site
pdb|1VRL|A Chain A, Muty Adenine Glycosylase In Complex With Dna And Soaked
Adenine Free Base
Length = 369
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 87 VKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146
V V+ Q T + F FPT E + A++ + A G + ++N+
Sbjct: 44 VSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYY----SRVRNLH 99
Query: 147 KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
+ E K + G + + E SR +G+GP TV VL
Sbjct: 100 AAVKEVKTRY------GGKVPDDPDEFSRLKGVGPYTVGAVL 135
>pdb|1RRQ|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
A:oxog Pair
Length = 369
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 87 VKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146
V V+ Q T + F FPT E + A++ + A G + ++N+
Sbjct: 44 VSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYY----SRVRNLH 99
Query: 147 KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188
+ E K + G + + E SR +G+GP TV VL
Sbjct: 100 AAVKEVKTRY------GGKVPDDPDEFSRLKGVGPYTVGAVL 135
>pdb|2NOB|A Chain A, Structure Of Catalytically Inactive H270a Human 8-
Oxoguanine Glycosylase Crosslinked To 8-Oxoguanine Dna
Length = 325
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 179 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 234
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G + C+ + L + PVD ++ I+ + W PT +
Sbjct: 235 HKALCILPGVGTQVADCICLMALDKPQAVPVDVAMWHIAQRDYSWHPTTS 284
>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
Length = 977
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 15/123 (12%)
Query: 130 RCGGLAPTKAACIKN----ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVA 185
RC G+A +A + N I + L S G +E+ + A L+ G G T
Sbjct: 119 RCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIXHSATVAALAESYGRGAMTNH 178
Query: 186 CVLMFH----LQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
+ + + L P + H WV A D+ T +H++ P+ + C
Sbjct: 179 WIDLKNSDVILMMGSNPAENHPISFK----WVMRAKDKGATLIHVD---PRYTRTSTKCD 231
Query: 242 LYT 244
LY
Sbjct: 232 LYA 234
>pdb|3PVL|A Chain A, Structure Of Myosin Viia Myth4-Ferm-Sh3 In Complex With
The Cen1 Of Sans
Length = 655
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 41 LHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEE-------SVLDGLVKTVLSQ 93
+HG PP + Y +RL+ + P E + + + +DG KT+L+
Sbjct: 222 IHGGPPGYAPYCEERLRRTFVNGTRTQPPSWLELQATKSKKPIMLPVTFMDGTTKTLLTD 281
Query: 94 NTTEA----NSLKAFASLKSTF 111
+ T A N+L SLK F
Sbjct: 282 SATTARELCNALADKISLKDRF 303
>pdb|2JHJ|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
pdb|2JHJ|B Chain B, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
Length = 295
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 55/144 (38%), Gaps = 45/144 (31%)
Query: 81 SVLDGLVKTVLSQNTT-------------------EANSLKAFASLKSTFPTWEHVLAAE 121
SV +G+ K ++ Q + E N LK + FPT E +L A
Sbjct: 117 SVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYG-----FPTQEAILKA- 170
Query: 122 QKCIENAIRCGGLAPTKAACIKNI-----LKCLLESKGKLCLEYLRGLSIDEIKAELSRF 176
+E CG L+ KA I I L+ L E + EYL + F
Sbjct: 171 --GVEGLRECG-LSRRKAELIVEIAKEENLEELKEWGEEEAYEYL------------TSF 215
Query: 177 RGIGPKTVACVLMFHLQQDDFPVD 200
+GIG T VL L ++ FP D
Sbjct: 216 KGIGRWTAELVLSMALGKNVFPAD 239
>pdb|2JHN|A Chain A, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
pdb|2JHN|B Chain B, 3-Methyladenine Dna-Glycosylase From Archaeoglobus
Fulgidus
Length = 295
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 55/144 (38%), Gaps = 45/144 (31%)
Query: 81 SVLDGLVKTVLSQNTT-------------------EANSLKAFASLKSTFPTWEHVLAAE 121
SV +G+ K ++ Q + E N LK + FPT E +L A
Sbjct: 117 SVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYG-----FPTQEAILKA- 170
Query: 122 QKCIENAIRCGGLAPTKAACIKNI-----LKCLLESKGKLCLEYLRGLSIDEIKAELSRF 176
+E CG L+ KA I I L+ L E + EYL + F
Sbjct: 171 --GVEGLRECG-LSRRKAELIVEIAKEENLEELKEWGEEEAYEYL------------TSF 215
Query: 177 RGIGPKTVACVLMFHLQQDDFPVD 200
+GIG T VL L ++ FP D
Sbjct: 216 KGIGRWTAELVLSIALGKNVFPAD 239
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 163 GLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVF 204
G +DEI A F+G+ P +A L LQ DFP VF
Sbjct: 1 GSHMDEILARAGIFQGVEPSAIAA-LTKQLQPVDFPRGHTVF 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,237,925
Number of Sequences: 62578
Number of extensions: 326780
Number of successful extensions: 733
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 37
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)