BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023471
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2
Length = 1393
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 108 KSTFPT--WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLS 165
+ST T W+ + AA+ K + I+ G+ A I+ L L+ G + LE+LR +
Sbjct: 877 RSTMDTVDWKAIRAADVKEVAETIKSRGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVP 936
Query: 166 IDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH 225
D+ K L F G+G K+V CV + L FPVDT+V I+ +GWVP LH
Sbjct: 937 PDKAKEYLLSFNGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLH 996
Query: 226 LNQRIP 231
L + P
Sbjct: 997 LLEMYP 1002
>sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2
Length = 1332
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W+ + + I N I G+ A IK L L++ G + LE+LR + D+ K L
Sbjct: 817 WDALRCTDVHKIANIIIKRGMNNMLAERIKAFLNRLVKKHGSIDLEWLRDVPPDKAKEYL 876
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
G+G K+V CV + L Q FPVDT+V I+ +GWVP ++ +HL + P
Sbjct: 877 LSINGLGLKSVECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLELYP 934
>sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1
SV=2
Length = 1987
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
+E + A I AI+ G+ A IK+ L+ +++ G + LE+LR D+ K L
Sbjct: 1476 YEAIRRASISEISEAIKERGMNNMLAVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYL 1535
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
RG+G K+V CV + L FPVDT+V I+ +GWVP LHL + P
Sbjct: 1536 LSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYP 1593
>sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=nth PE=3 SV=1
Length = 213
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ TVLSQ T + N+ KA L + T + + A+ + + + I+ G+ KA I I
Sbjct: 26 LISTVLSQRTRDENTEKASKKLFEVYRTPQELAKAKPEDLYDLIKESGMYRQKAERIVEI 85
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+E G G D ++ EL + G+G KT VL ++ VDTHV
Sbjct: 86 SRILVEKYG--------GRVPDSLE-ELLKLPGVGRKTANIVLWVGFKKPALAVDTHVHR 136
Query: 206 ISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK--------LCRNCIKK 255
IS +GWV T +T L + +P++L +N + G+ LC C K
Sbjct: 137 ISNRLGWVKTRTP-EETEEALKKLLPEDLWGPINGSMVEFGRRICKPQNPLCEECFLK 193
>sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2
Length = 1044
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 26/180 (14%)
Query: 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAEL 173
W V + Q +E I+ G + I L + G + LE+LR +K L
Sbjct: 525 WSDVRLSGQNVLETTIKKRGQFRILSERILKFLNDEVNQNGNIDLEWLRNAPSHLVKRYL 584
Query: 174 SRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLH-------L 226
GIG K+ CV + L+ FPVDT+V I+ +G VP N +H +
Sbjct: 585 LEIEGIGLKSAECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPSM 644
Query: 227 NQ----------RIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCE 276
+ ++P+E ++L+ + T GK+ C K N N CP+ + C+
Sbjct: 645 DSIQKYLWPRLCKLPQETLYELHYQMITFGKVF--CTKTIPN-------CNACPMKSECK 695
>sp|Q58829|Y1434_METJA Putative endonuclease MJ1434 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1434 PE=3 SV=1
Length = 220
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 19/202 (9%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWE-HVLAAEQKCIENAIRCGGLAPTK 138
E+ + +V +L+QNT+ N +A +LK E +L ++ ++ IR G K
Sbjct: 29 ETRYEVVVGAILTQNTSWKNVERAINNLKMEDLLEEVKILNVDEDKLKELIRPAGFYNLK 88
Query: 139 AACIKNILKCLLESKGKLCLEYLRGLSIDEI--KAELSRFRGIGPKTVACVLMFHLQQDD 196
A +KN+ K ++E+ G E + D + +AEL G+G +T +L++ L ++
Sbjct: 89 AKRLKNVTKFIVENYGNT--EEMAKTDKDTLILRAELLSINGVGKETADSILLYALDRES 146
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKF--DLNCLLYTH-GKLCRNCI 253
F VD + + +G + A ++ + +PK+L+ + + L+ H K C
Sbjct: 147 FVVDAYTKRMFSRLGVINEKAKYDEIKEIFEKNLPKDLEIYKEYHALIVEHCKKFC---- 202
Query: 254 KKGGNRQRKESAGNLCPLLNYC 275
RK++ + CP+ +C
Sbjct: 203 -------RKKALCDNCPIKEFC 217
>sp|O05956|END3_RICPR Endonuclease III OS=Rickettsia prowazekii (strain Madrid E) GN=nth
PE=3 SV=1
Length = 212
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 79/194 (40%), Gaps = 25/194 (12%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS T+ + A L T+ T E L ++ ++ I+ GL +KA I +
Sbjct: 33 LVAVILSARATDISVNLATKHLFETYNTPEKFLELGEEGLKKYIKSIGLFNSKAKNIIAL 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ L+++ SI EL + G+G KT VL VDTHVF
Sbjct: 93 CQILIKNYQT---------SIPNNFKELVKLPGVGRKTANVVLNCLFAMPTMAVDTHVFR 143
Query: 206 ISKAIGWVP--TAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKE 263
+SK IG TAA K L + D L Y H L I G +
Sbjct: 144 VSKRIGLAKGNTAAIVEKELLQI---------IDEKWLTYAHHWL----ILHGRYICKAR 190
Query: 264 SAG-NLCPLLNYCE 276
G N+CP+ YCE
Sbjct: 191 KPGCNICPIKEYCE 204
>sp|P46303|UVEN_MICLC Ultraviolet N-glycosylase/AP lyase OS=Micrococcus luteus (strain
ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB
9278 / NCTC 2665 / VKM Ac-2230) GN=pdg PE=1 SV=2
Length = 279
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 26/200 (13%)
Query: 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKA 139
E+ + LV TVLS TT+ A +L + FP + AA + ++ +R G KA
Sbjct: 42 ETPFELLVATVLSAQTTDVRVNAATPALFARFPDAHAMAAATEPELQELVRSTGFYRNKA 101
Query: 140 ACIKNILKCLLESKGKLCLEYLRGLSIDEIKA---ELSRFRGIGPKTVACVLMFHLQQDD 196
+ I + + L+ G E+ A +L G+G KT VL Q
Sbjct: 102 SAILRLSQELV------------GRHDGEVPARLEDLVALPGVGRKTAFVVLGNAFGQPG 149
Query: 197 FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFD-LNCLLYTHGKLCRNCIKK 255
VDTH +++ +G+ D K + +P + L+ L HG+ R C
Sbjct: 150 ITVDTHFGRLARRLGFT-DETDPGKGRARRGRPVPPARDWTMLSHRLIFHGR--RVC--- 203
Query: 256 GGNRQRKESAGNLCPLLNYC 275
R+ + G CP+ +C
Sbjct: 204 ---HARRPACGR-CPIARWC 219
>sp|Q4UK93|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=nth PE=3 SV=1
Length = 213
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 83/199 (41%), Gaps = 29/199 (14%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS T+ + A SL T+ T E +L + ++ I+ GL +KA I +
Sbjct: 33 LVAVMLSAQATDISVNLATKSLFETYDTTEKILELGEDGLKKYIKSIGLFNSKAKNIIAL 92
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K L+ + S+ EL + G+G KT VL VDTHVF
Sbjct: 93 CKILISNYQS---------SVPNDFKELIKLPGVGRKTANVVLNCLFGMPTMAVDTHVFR 143
Query: 206 ISKAIGWV----PTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNRQ 260
++K IG P ++ L Q I ++ + L HG+ +C +
Sbjct: 144 VAKRIGLARGNSPEIVEK-----ELLQIINEKWLTHAHHWLILHGRYIC---------KA 189
Query: 261 RKESAGNLCPLLNYCEKSN 279
RK ++CP+ YCE N
Sbjct: 190 RKPDC-DICPIKEYCEYYN 207
>sp|P0AB83|END3_ECOLI Endonuclease III OS=Escherichia coli (strain K12) GN=nth PE=1 SV=1
Length = 211
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 79/201 (39%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T +L + ++ I+ GL +KA
Sbjct: 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
I + LLE + E +A L G+G KT VL VD
Sbjct: 88 NIIKTCRILLEQHNG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F + + P + + L + +P E K D + L HG+ CI
Sbjct: 139 THIFRVCNRTQFAP-GKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE K
Sbjct: 190 RKPRCGS-CIIEDLCEYKEKV 209
>sp|P0AB84|END3_ECOL6 Endonuclease III OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nth PE=3 SV=1
Length = 211
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 79/201 (39%), Gaps = 19/201 (9%)
Query: 81 SVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAA 140
S + L+ +LS T+ + KA A L T +L + ++ I+ GL +KA
Sbjct: 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAE 87
Query: 141 CIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVD 200
I + LLE + E +A L G+G KT VL VD
Sbjct: 88 NIIKTCRILLEQHNG---------EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVD 138
Query: 201 THVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQ 260
TH+F + + P + + L + +P E K D + L HG+ CI
Sbjct: 139 THIFRVCNRTQFAP-GKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRY--TCI------A 189
Query: 261 RKESAGNLCPLLNYCEKSNKT 281
RK G+ C + + CE K
Sbjct: 190 RKPRCGS-CIIEDLCEYKEKV 209
>sp|Q9FNY7|OGG1_ARATH N-glycosylase/DNA lyase OGG1 OS=Arabidopsis thaliana GN=OGG1 PE=1
SV=1
Length = 365
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 154 GKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHL-QQDDFPVDTHVFEIS 207
G L LR + + E A L G+GPK AC+ +F L Q PVDTHV++I+
Sbjct: 233 GNEWLLSLRKVELQEAVAALCTLPGVGPKVAACIALFSLDQHSAIPVDTHVWQIA 287
>sp|P44319|END3_HAEIN Endonuclease III OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=nth PE=3 SV=1
Length = 211
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 85/220 (38%), Gaps = 24/220 (10%)
Query: 62 RDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAE 121
R++N P +Y+ S + L+ +LS T+ KA L T + +L
Sbjct: 14 REQNPHPTTELQYN-----SPFELLIAVILSAQATDKGVNKATEKLFPVANTPQAILDLG 68
Query: 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
+++ I+ GL +KA I + L+E + E + L G+G
Sbjct: 69 LDGLKSYIKTIGLFNSKAENIIKTCRDLIEKHNG---------EVPENREALEALAGVGR 119
Query: 182 KTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCL 241
KT VL VDTH+F + + D K L + +P E K D++
Sbjct: 120 KTANVVLNTAFGHPTIAVDTHIFRVCNRTNFA-AGKDVVKVEEKLLKVVPNEFKVDVHHW 178
Query: 242 LYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSNKT 281
L HG+ CI RK G+ C + + CE K
Sbjct: 179 LILHGRY--TCI------ARKPRCGS-CIIEDLCEYKEKV 209
>sp|P39788|END3_BACSU Probable endonuclease III OS=Bacillus subtilis (strain 168) GN=nth
PE=3 SV=1
Length = 219
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 26/199 (13%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
+V LS T+A + +L + E LA + ++ I+ GL KA I+ +
Sbjct: 34 VVAVALSAQCTDALVNRVTKTLFQKYKRPEDYLAVPLEELQQDIKSIGLYRNKAKNIQKL 93
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
K ++E G + + EL + G+G KT V+ VDTHV
Sbjct: 94 SKMIIEDYGG---------EVPRDRDELVKLPGVGRKTANVVVSVAFGVPAIAVDTHVER 144
Query: 206 ISKAIG---WVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRK 262
+SK +G W + + KT L +++PKE D + TH +L I G +
Sbjct: 145 VSKRLGICRWKDSVLEVEKT---LMRKVPKE---DWS---VTHHRL----IFFGRYHCKA 191
Query: 263 ESAGNL-CPLLNYCEKSNK 280
+S CPLL+ C + K
Sbjct: 192 QSPRCAECPLLSLCREGQK 210
>sp|P78549|NTHL1_HUMAN Endonuclease III-like protein 1 OS=Homo sapiens GN=NTHL1 PE=1 SV=2
Length = 312
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 17/205 (8%)
Query: 51 YRNQRLKHNMTRDKNSVPLDM----NEYDEGEEESV--LDGLVKTVLSQNTTEANSLKAF 104
++ Q + R+K P+D + YD V L+ +LS T + + A
Sbjct: 92 WQQQLVNIRAMRNKKDAPVDHLGTEHCYDSSAPPKVRRYQVLLSLMLSSQTKDQVTAGAM 151
Query: 105 ASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGL 164
L++ T + +L + + I G +K IK L + G
Sbjct: 152 QRLRARGLTVDSILQTDDATLGKLIYPVGFWRSKVKYIKQTSAILQQHYGG--------- 202
Query: 165 SIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAIGWVPTAADR-NKT 222
I AEL G+GPK + VDTHV I+ + W A +T
Sbjct: 203 DIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANRLRWTKKATKSPEET 262
Query: 223 YLHLNQRIPKELKFDLNCLLYTHGK 247
L + +P+EL ++N LL G+
Sbjct: 263 RAALEEWLPRELWHEINGLLVGFGQ 287
>sp|Q68W04|END3_RICTY Endonuclease III OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=nth PE=3 SV=1
Length = 212
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS T+ + L T+ T E +LA ++ ++ I+ GL +KA KNI
Sbjct: 33 LVAVILSARATDISVNLVTKHLFETYNTPEKILALGEEGLKKYIKSIGLFNSKA---KNI 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ + ++ ++ + ++ K EL + G+G KT VL VDTHVF
Sbjct: 90 I-----ASCQILIKNYQASIPNDFK-ELVKLPGVGRKTANVVLNCLFAMPTMAVDTHVFR 143
Query: 206 ISKAIG 211
+SK IG
Sbjct: 144 VSKRIG 149
>sp|Q8SRB8|NTH1_ENCCU Endonuclease III homolog OS=Encephalitozoon cuniculi (strain GB-M1)
GN=NTH1 PE=1 SV=1
Length = 238
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFP-------------TWEHVLAAEQKC 124
EEE LV +LS T + + +A A L+ P T E V ++ K
Sbjct: 44 EEERRFHILVSLLLSSQTKDEVTYEAMARLRKLLPESAATDGEARGGLTIERVANSDVKH 103
Query: 125 IENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTV 184
I I+ G KAA +K I + L E +GL E+K +L GIG K +
Sbjct: 104 INECIKKVGFHNRKAANLKKIAEILRE----------KGLP-REMK-DLISLPGIGNK-M 150
Query: 185 ACVLMFHL--QQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLL 242
A + M H + VDTHV IS IG V T D T L + +P++ +N +L
Sbjct: 151 ALLYMSHACNRTVGISVDTHVHRISNRIGLVRT-RDVESTRRELERVVPRKEWKTINNIL 209
Query: 243 YTHGK 247
G+
Sbjct: 210 VGFGQ 214
>sp|Q92GH4|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=nth PE=3 SV=1
Length = 210
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS T+ + A SL +T+ T E +L ++ ++ I+ GL +KA KNI
Sbjct: 33 LVAVILSAQATDISVNLATKSLFATYDTPEKILELGEEGLKKYIKSIGLFNSKA---KNI 89
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ + K+ + + ++ KA L + G+G KT VL VDTHVF
Sbjct: 90 I-----ALCKILISNYQASVPNDFKA-LIKLPGVGRKTANVVLNCLFGMPTMAVDTHVFR 143
Query: 206 ISKAIG 211
++ IG
Sbjct: 144 VANRIG 149
>sp|O70249|OGG1_RAT N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Ogg1 PE=2 SV=1
Length = 345
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 116 HVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSR 175
H LA + +E +R GL + L E G L+ LR S +E L
Sbjct: 185 HALAGPE--VETHLRKLGLGYRARYVCASAKAILEEQGGPAWLQQLRVASYEEAHKALCT 242
Query: 176 FRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVP 214
G+G K C+ + L + PVD HV++I+ + GW P
Sbjct: 243 LPGVGTKVADCICLMALDKPQAVPVDIHVWQIAHRDYGWQP 283
>sp|O08760|OGG1_MOUSE N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2
Length = 345
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 116 HVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKG-KLCLEYLRGLSIDEIKAELS 174
H LA + E +R GL +A ++ K +LE +G L+ LR +E L
Sbjct: 185 HALAGPEA--ETHLRKLGLG-YRARYVRASAKAILEEQGGPAWLQQLRVAPYEEAHKALC 241
Query: 175 RFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVP 214
G+G K C+ + L + PVD HV++I+ + GW P
Sbjct: 242 TLPGVGAKVADCICLMALDKPQAVPVDVHVWQIAHRDYGWHP 283
>sp|Q89AW4|END3_BUCBP Endonuclease III OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=nth PE=3 SV=1
Length = 215
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 14/164 (8%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS TT+ K L T ++ I IR GL K++ I
Sbjct: 38 LISVMLSAQTTDRMVNKTTQRLFGIANTPSGFISIGLHAIRENIRKLGLYNKKSSNILRT 97
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
+ LL+ G + + +L G+G KT +L ++ VDTHVF
Sbjct: 98 CEILLKRYGG---------KVPNNREDLESLPGVGRKTANVILNVIFKKKTIAVDTHVFR 148
Query: 206 ISKAIGWV--PTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ IG+ T K L++ +P++ K + + HG+
Sbjct: 149 LCNRIGFAKGTTVLTVEKKLLNI---VPEKFKLNFHAWFIMHGR 189
>sp|O15527|OGG1_HUMAN N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE=1 SV=2
Length = 345
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 111 FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEI 169
FP+ + + E +E +R GL +A + + +LE +G L L+ LR S +E
Sbjct: 181 FPSLQALAGPE---VEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEA 236
Query: 170 KAELSRFRGIGPKTVACVLMFHLQQDD-FPVDTHVFEIS-KAIGWVPTAA 217
L G+G K C+ + L + PVD H++ I+ + W PT +
Sbjct: 237 HKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTS 286
>sp|O83754|END3_TREPA Endonuclease III OS=Treponema pallidum (strain Nichols) GN=nth PE=3
SV=1
Length = 211
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 18/166 (10%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
LV +LS T+ + KA A+L T + +LA ++ + + IR L PTKA I +
Sbjct: 36 LVAVLLSAQATDKSVNKATAALFDVADTPQAMLALGEERLCSYIRTINLYPTKARRIIAL 95
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE 205
L+E + + D L G+G KT VL VDTH+
Sbjct: 96 SAELIE-------RFAAQVPCD--AHALESLPGVGHKTANVVLNMGFGIPTIAVDTHILR 146
Query: 206 ISKAIGW----VPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGK 247
+ IG P A +R+ + P+E + + + HG+
Sbjct: 147 TAPRIGLSSGRTPRAVERDLLVV-----TPREFRMHAHHWILLHGR 187
>sp|O27397|OGG1_METTH Probable N-glycosylase/DNA lyase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1342 PE=3 SV=1
Length = 312
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 127 NAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVAC 186
N +R G+ +A I+ + L E ++ + + G+ D+ + L G+GPK C
Sbjct: 184 NDLRSCGVG-YRAPYIRETSRILAE---EMDIRRIDGMDYDDARELLLELSGVGPKVADC 239
Query: 187 VLMFHLQQDD-FPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTH 245
+L++ ++ + FPVD + I I P +++ + +R E+ + L+ H
Sbjct: 240 ILLYGFRKTEAFPVDVWIRRIMNHIH--PGRNFNDRSMVEFARREYGEMADYVQLYLFNH 297
Query: 246 GK 247
+
Sbjct: 298 AR 299
>sp|Q2KID2|NTHL1_BOVIN Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1
Length = 305
Score = 38.1 bits (87), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 11/164 (6%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145
L+ +LS T + + A L++ T + +L + + I G +K IK
Sbjct: 126 LLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDSTLGALIYPVGFWRSKVKYIKQT 185
Query: 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHVF 204
L + I AEL G+GPK + VDTHV
Sbjct: 186 SAILQQRYDG---------DIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVH 236
Query: 205 EISKAIGWVPTAADR-NKTYLHLNQRIPKELKFDLNCLLYTHGK 247
I+ + W A +T L + +P+EL ++N LL G+
Sbjct: 237 RIANRLRWTKKATKSPEETRRALEEWLPRELWSEINGLLVGFGQ 280
>sp|P53397|OGG1_YEAST N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=OGG1 PE=1 SV=1
Length = 376
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 167 DEIKAELSRFRGIGPKTVACVLMFHLQQDDF-PVDTHVFEISK 208
++++ L + G+GPK CV + L D PVD HV I+K
Sbjct: 226 EDVREHLMSYNGVGPKVADCVCLMGLHMDGIVPVDVHVSRIAK 268
>sp|P54137|NTH1_CAEEL Probable endonuclease III homolog OS=Caenorhabditis elegans
GN=nth-1 PE=1 SV=2
Length = 298
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 173 LSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIP 231
L G+GPK V+ + VDTHV IS +GW+ T+ KT L +P
Sbjct: 149 LCALPGVGPKMANLVMQIAWGECVGIAVDTHVHRISNRLGWIKTSTP-EKTQKALEILLP 207
Query: 232 KELKFDLNCLLYTHGKL 248
K +N LL G++
Sbjct: 208 KSEWQPINHLLVGFGQM 224
>sp|Q09907|NTH1_SCHPO Endonuclease III homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nth1 PE=1 SV=1
Length = 355
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 150 LESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKT-VACVLMFHLQQDDFPVDTHVFEISK 208
L+ ++ E +G I + +L G+GPK C+ + + VD HV I
Sbjct: 111 LKQMARILSEKFQG-DIPDTVEDLMTLPGVGPKMGYLCMSIAWNKTVGIGVDVHVHRICN 169
Query: 209 AIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKG 256
+ W T + +T L +PKEL F+LN L G+ C+ +G
Sbjct: 170 LLHWCNTKTE-EQTRAALQSWLPKELWFELNHTLVGFGQTI--CLPRG 214
>sp|O35980|NTHL1_MOUSE Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1
Length = 300
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 78/222 (35%), Gaps = 25/222 (11%)
Query: 51 YRNQRLKHNMTRDKNSVPLDM----NEYDEGEEESV--LDGLVKTVLSQNTTEANSLKAF 104
++ Q + R K P+D + YD V L+ +LS T + + A
Sbjct: 80 WQQQLANIRIMRSKKDAPVDQLGAEHCYDASAPPKVRRYQVLLSLMLSSQTKDQVTAGAM 139
Query: 105 ASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGL 164
L++ T E +L + + I G K IK L +
Sbjct: 140 QRLRARGLTVESILQTDDDTLGRLIYPVGFWRNKVKYIKQTTAILQQRYEG--------- 190
Query: 165 SIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAIGWVPTAADR-NKT 222
I AEL G+GPK + VDTHV I+ + W +T
Sbjct: 191 DIPASVAELVALPGVGPKMAHLAMAVAWGTISGIAVDTHVHRIANRLRWTKKMTKTPEET 250
Query: 223 YLHLNQRIPKELKFDLNCLLYTHGKL--------CRNCIKKG 256
+L + +P+ L ++N LL G+ C+ C+ K
Sbjct: 251 RKNLEEWLPRVLWSEVNGLLVGFGQQICLPVHPRCQACLNKA 292
>sp|O31544|YFJP_BACSU Putative DNA-3-methyladenine glycosylase YfjP OS=Bacillus subtilis
(strain 168) GN=yfjP PE=3 SV=1
Length = 287
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 152 SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDD-FPV 199
++G L L L ++ ++I +L + RGIGP TV VLMF L + + FP+
Sbjct: 192 AEGTLSLSELPHMADEDIMKKLIKIRGIGPWTVQNVLMFGLGRPNLFPL 240
>sp|Q92383|MAG1_SCHPO DNA-3-methyladenine glycosylase 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mag1 PE=1 SV=1
Length = 228
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKST-----FPTWEHVLAAEQKCIENAIRCG 132
E++ + L++ V SQ + F KS FPT E + + + + R
Sbjct: 46 EKKEPYEELIRAVASQQLHSKAANAIFNRFKSISNNGQFPTPEEIRDMDFEIM----RAC 101
Query: 133 GLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHL 192
G + K +K+I + + E R LS +E+ L++ +GIG TV +L+F L
Sbjct: 102 GFSARKIDSLKSIAEATISGLIPTKEEAER-LSNEELIERLTQIKGIGRWTVEMLLIFSL 160
Query: 193 QQDD-FPVD 200
+DD P D
Sbjct: 161 NRDDVMPAD 169
>sp|P37878|3MGA_BACSU DNA-3-methyladenine glycosylase OS=Bacillus subtilis (strain 168)
GN=alkA PE=1 SV=1
Length = 303
Score = 34.7 bits (78), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 130 RCGGLAPTKAACIKNILK--------CLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181
R L PT A IK +K L + G+L E L ++ + + L + RGIGP
Sbjct: 178 RIARLTPTDLADIKMTVKKSEYIIGIARLMASGELSREKLMKMNFKDAEKNLIKIRGIGP 237
Query: 182 KTVACVLMFHLQ-QDDFPVD 200
T VLM L+ FP+D
Sbjct: 238 WTANYVLMRCLRFPTAFPID 257
>sp|Q8KA16|END3_BUCAP Endonuclease III OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=nth PE=3 SV=1
Length = 209
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 86 LVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN- 144
L+ +LS +T+ K +L T + +L + + I+ GL TK+ I N
Sbjct: 33 LLSVILSAKSTDVMVNKITGTLFQIANTPQSILKLGFNKLRHYIKSIGLYNTKSLNIINS 92
Query: 145 --ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
++K +K + + EL G+G KT +L ++ VDTH
Sbjct: 93 AYLIKTKYNNK------------VPSNRTELESLPGVGRKTANIILNVLFNKNTIAVDTH 140
Query: 203 VFEISKAIGW 212
VF ++ G+
Sbjct: 141 VFRVANRTGF 150
>sp|A3PCI2|ILVD_PROM0 Dihydroxy-acid dehydratase OS=Prochlorococcus marinus (strain MIT
9301) GN=ilvD PE=3 SV=1
Length = 557
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 19/152 (12%)
Query: 92 SQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLE 151
++ T ++ +A L S T E ++ E+ CI A CGG+ N + ++E
Sbjct: 155 GEDLTVVSAFEAVGQLTSGKITEERLIQVEKNCIPGAGSCGGM------FTANTMSAVIE 208
Query: 152 SKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDT---HVFEISK 208
G L L + ++ ++++ ELS + A +L+ +++D P+D FE
Sbjct: 209 VLG-LSLPHSSTMAAEDLEKELSADKS------AEILVSAIKKDIRPLDLMTKKAFE--N 259
Query: 209 AIGWVPTAADRNKTYLHLNQRIPKELKFDLNC 240
AI + LH+ I D+N
Sbjct: 260 AISVIMAIGGSTNAVLHI-LAIANTAGIDINI 290
>sp|Q9V3I8|OGG1_DROME N-glycosylase/DNA lyase OS=Drosophila melanogaster GN=Ogg1 PE=2
SV=2
Length = 343
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 138 KAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACV-LMFHLQQDD 196
+A I L+ + + G+ L+ + ++ + EL+ GIG K C+ LM +
Sbjct: 206 RAKFIAQTLQEIQKKGGQNWFISLKSMPFEKAREELTLLPGIGYKVADCICLMSMGHLES 265
Query: 197 FPVDTHVFEISK 208
PVD H++ I++
Sbjct: 266 VPVDIHIYRIAQ 277
>sp|P57219|END3_BUCAI Endonuclease III OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=nth PE=3 SV=1
Length = 210
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 25/197 (12%)
Query: 83 LDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACI 142
+ L+ +LS +T+ K L T E + + ++N I+ GL TKA I
Sbjct: 30 FELLLSVILSAQSTDFIVNKTTKILFKIANTPETIFLLGLERLKNYIKDIGLYNTKALNI 89
Query: 143 KNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202
+L + + + EL G+G KT +L ++ VDTH
Sbjct: 90 IRTSFIILTKYNSI---------VPNNRIELESLPGVGRKTANIILNILFKKKTIAVDTH 140
Query: 203 VFEISKAIGWVPTAADRNKTYLH--LNQRIPKELKFDLNCLLYTHGK-LCRNCIKKGGNR 259
VF + + A +N + L + +P K + + HG+ +C
Sbjct: 141 VFRVCNRTNF---AKGKNVKIVEEKLIKVVPSIFKLNFHSWFILHGRYIC---------- 187
Query: 260 QRKESAGNLCPLLNYCE 276
++ N+C + CE
Sbjct: 188 TARKIKCNICLIFKLCE 204
>sp|E1C1R4|UBP47_CHICK Ubiquitin carboxyl-terminal hydrolase 47 OS=Gallus gallus GN=USP47
PE=3 SV=1
Length = 1375
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 161 LRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRN 220
L S++E+K +LS GI + + F + FP D V EI + + W P + N
Sbjct: 1247 LESSSVEELKEKLSELSGIPLENIE----FAKGRGTFPCDISVLEIHQDLDWNPKVSTLN 1302
Query: 221 KTYLHL 226
L++
Sbjct: 1303 VWPLYI 1308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,110,041
Number of Sequences: 539616
Number of extensions: 4265262
Number of successful extensions: 10611
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 10583
Number of HSP's gapped (non-prelim): 52
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)