Query 023471
Match_columns 281
No_of_seqs 274 out of 2010
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 07:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orn_A Endonuclease III; DNA r 100.0 1.5E-49 5.1E-54 346.4 19.7 206 29-280 8-213 (226)
2 2abk_A Endonuclease III; DNA-r 100.0 5.3E-49 1.8E-53 339.9 17.3 206 29-281 4-209 (211)
3 3n5n_X A/G-specific adenine DN 100.0 5.5E-48 1.9E-52 345.5 19.5 226 17-280 3-233 (287)
4 1kea_A Possible G-T mismatches 100.0 8.6E-48 2.9E-52 334.4 17.2 211 27-280 5-218 (221)
5 1kg2_A A/G-specific adenine gl 100.0 1.2E-45 4.1E-50 321.8 17.5 183 78-279 26-212 (225)
6 3fsp_A A/G-specific adenine gl 100.0 1.5E-44 5E-49 336.5 17.6 205 32-280 14-222 (369)
7 1pu6_A 3-methyladenine DNA gly 100.0 6.5E-40 2.2E-44 284.1 16.7 185 31-248 4-212 (218)
8 2h56_A DNA-3-methyladenine gly 100.0 2.6E-33 8.8E-38 244.9 19.1 164 79-248 48-217 (233)
9 4b21_A Probable DNA-3-methylad 100.0 8.9E-33 3E-37 241.0 22.0 158 78-241 56-222 (232)
10 2yg9_A DNA-3-methyladenine gly 100.0 1.2E-32 4.2E-37 239.4 18.1 152 78-241 57-212 (225)
11 3fhg_A Mjogg, N-glycosylase/DN 100.0 1.3E-33 4.3E-38 242.8 10.8 159 78-255 29-190 (207)
12 3fhf_A Mjogg, N-glycosylase/DN 100.0 3.4E-32 1.2E-36 234.0 14.1 153 78-255 40-197 (214)
13 3s6i_A DNA-3-methyladenine gly 100.0 4.4E-31 1.5E-35 229.9 21.2 157 79-242 46-212 (228)
14 3i0w_A 8-oxoguanine-DNA-glycos 100.0 7E-30 2.4E-34 229.9 20.8 161 78-248 111-287 (290)
15 4e9f_A Methyl-CPG-binding doma 100.0 1.4E-30 4.7E-35 214.6 12.7 117 78-210 27-145 (161)
16 3n0u_A Probable N-glycosylase/ 100.0 2.6E-30 9E-35 223.1 13.2 158 78-248 46-217 (219)
17 2xhi_A N-glycosylase/DNA lyase 100.0 2.5E-28 8.6E-33 225.5 20.7 164 79-246 149-339 (360)
18 1mpg_A ALKA, 3-methyladenine D 100.0 2.9E-28 9.8E-33 218.8 19.3 190 30-243 70-274 (282)
19 2jhn_A ALKA, 3-methyladenine D 100.0 4.1E-28 1.4E-32 219.1 18.6 199 29-244 67-285 (295)
20 2ofk_A 3-methyladenine DNA gly 97.2 0.003 1E-07 52.1 10.8 113 79-193 28-170 (183)
21 2jg6_A DNA-3-methyladenine gly 97.1 0.0091 3.1E-07 49.3 12.8 112 80-193 29-170 (186)
22 2fmp_A DNA polymerase beta; nu 94.3 0.09 3.1E-06 47.5 7.1 52 133-189 64-116 (335)
23 2ihm_A POL MU, DNA polymerase 94.1 0.06 2.1E-06 49.2 5.5 52 133-189 68-120 (360)
24 1jms_A Terminal deoxynucleotid 92.3 0.14 4.6E-06 47.2 4.9 52 133-189 87-139 (381)
25 2a1j_A DNA repair endonuclease 92.2 0.28 9.7E-06 32.9 5.3 39 103-146 16-55 (63)
26 4gfj_A Topoisomerase V; helix- 92.0 0.13 4.5E-06 47.5 4.3 80 105-189 532-640 (685)
27 4glx_A DNA ligase; inhibitor, 91.9 0.51 1.7E-05 45.8 8.6 94 101-210 456-576 (586)
28 3vdp_A Recombination protein R 91.8 0.16 5.3E-06 42.7 4.3 30 165-194 20-49 (212)
29 2ztd_A Holliday junction ATP-d 91.7 0.11 3.9E-06 43.7 3.5 21 170-190 122-142 (212)
30 2bcq_A DNA polymerase lambda; 91.4 0.29 9.9E-06 44.2 6.0 50 133-189 64-114 (335)
31 1x2i_A HEF helicase/nuclease; 91.0 0.46 1.6E-05 32.4 5.5 38 147-190 28-65 (75)
32 1vdd_A Recombination protein R 90.5 0.24 8.3E-06 41.9 4.3 29 166-194 7-35 (228)
33 4gfj_A Topoisomerase V; helix- 89.4 1 3.4E-05 41.7 7.6 75 104-184 481-573 (685)
34 2a1j_B DNA excision repair pro 88.6 0.79 2.7E-05 32.9 5.3 37 149-191 48-84 (91)
35 1z00_A DNA excision repair pro 88.5 0.84 2.9E-05 32.5 5.4 39 147-191 33-71 (89)
36 1kft_A UVRC, excinuclease ABC 88.2 0.71 2.4E-05 32.1 4.7 34 151-190 42-75 (78)
37 1ixr_A Holliday junction DNA h 88.1 0.14 4.8E-06 42.5 1.1 22 170-191 106-127 (191)
38 1z00_B DNA repair endonuclease 88.0 0.75 2.5E-05 32.8 4.7 38 104-146 31-69 (84)
39 2owo_A DNA ligase; protein-DNA 87.8 1.9 6.5E-05 42.4 9.0 80 103-191 458-564 (671)
40 2fmp_A DNA polymerase beta; nu 87.3 1 3.5E-05 40.5 6.3 57 124-191 21-77 (335)
41 3c1y_A DNA integrity scanning 86.4 0.75 2.6E-05 42.0 4.9 46 103-151 327-372 (377)
42 2duy_A Competence protein come 86.1 0.44 1.5E-05 32.9 2.6 22 169-190 25-46 (75)
43 2ihm_A POL MU, DNA polymerase 86.1 1.3 4.4E-05 40.3 6.3 56 124-191 26-81 (360)
44 2ztd_A Holliday junction ATP-d 85.4 2 6.9E-05 36.0 6.8 19 125-143 122-140 (212)
45 1jms_A Terminal deoxynucleotid 84.6 1.4 4.8E-05 40.4 5.9 53 127-191 48-100 (381)
46 1z00_B DNA repair endonuclease 84.0 0.97 3.3E-05 32.2 3.6 26 167-193 14-39 (84)
47 2bcq_A DNA polymerase lambda; 83.6 1.4 4.9E-05 39.5 5.4 56 124-191 22-77 (335)
48 1ixr_A Holliday junction DNA h 83.1 3 0.0001 34.3 6.8 36 106-144 87-125 (191)
49 1dgs_A DNA ligase; AMP complex 83.0 2.4 8.2E-05 41.7 7.1 81 102-191 452-559 (667)
50 2a1j_A DNA repair endonuclease 82.9 0.87 3E-05 30.5 2.8 24 170-194 3-26 (63)
51 1wcn_A Transcription elongatio 82.8 2.6 8.7E-05 28.8 5.2 43 103-148 19-62 (70)
52 2csb_A Topoisomerase V, TOP61; 81.7 4.4 0.00015 35.2 7.4 25 170-195 410-434 (519)
53 2duy_A Competence protein come 81.3 0.47 1.6E-05 32.7 1.1 54 114-189 18-71 (75)
54 1s5l_U Photosystem II 12 kDa e 81.1 0.72 2.5E-05 35.8 2.1 52 116-189 56-107 (134)
55 1cuk_A RUVA protein; DNA repai 79.6 2.9 9.9E-05 34.8 5.5 21 170-190 107-127 (203)
56 2bgw_A XPF endonuclease; hydro 77.3 3.7 0.00013 34.1 5.6 36 149-190 178-213 (219)
57 3arc_U Photosystem II 12 kDa e 77.0 1.3 4.6E-05 32.4 2.4 55 113-189 16-70 (97)
58 1cuk_A RUVA protein; DNA repai 76.8 1.7 5.8E-05 36.2 3.3 27 167-194 69-95 (203)
59 2edu_A Kinesin-like protein KI 76.3 5.7 0.0002 28.6 5.7 58 115-190 32-89 (98)
60 2edu_A Kinesin-like protein KI 76.2 1.8 6E-05 31.5 2.9 21 170-190 39-59 (98)
61 3b0x_A DNA polymerase beta fam 76.1 7.2 0.00025 37.5 8.0 51 133-189 60-111 (575)
62 1z00_A DNA excision repair pro 75.1 6.3 0.00022 27.7 5.6 40 104-146 32-71 (89)
63 2i5h_A Hypothetical protein AF 74.2 1.5 5.1E-05 36.4 2.2 34 169-202 130-163 (205)
64 1s5l_U Photosystem II 12 kDa e 73.9 1.3 4.4E-05 34.4 1.6 20 170-189 62-81 (134)
65 3arc_U Photosystem II 12 kDa e 73.0 1.2 4.2E-05 32.6 1.3 20 170-189 25-44 (97)
66 2a1j_B DNA excision repair pro 71.4 5.8 0.0002 28.1 4.7 60 80-146 24-84 (91)
67 1kft_A UVRC, excinuclease ABC 71.0 3.7 0.00013 28.2 3.4 39 104-145 37-75 (78)
68 2w9m_A Polymerase X; SAXS, DNA 70.9 2.8 9.5E-05 40.5 3.6 78 167-248 93-179 (578)
69 1x2i_A HEF helicase/nuclease; 70.4 6.6 0.00023 26.3 4.6 41 103-146 26-66 (75)
70 2kp7_A Crossover junction endo 68.3 2.9 9.8E-05 29.9 2.3 40 138-188 36-75 (87)
71 2w9m_A Polymerase X; SAXS, DNA 67.9 7.2 0.00025 37.5 5.8 55 122-187 93-147 (578)
72 2dkz_A Hypothetical protein LO 66.3 3.5 0.00012 29.2 2.4 46 114-168 12-57 (84)
73 1vq8_Y 50S ribosomal protein L 63.5 1.5 5.1E-05 37.6 0.0 24 170-193 14-37 (241)
74 1u9l_A Transcription elongatio 62.4 22 0.00074 24.1 5.8 45 104-151 19-64 (70)
75 1wcn_A Transcription elongatio 61.3 20 0.00069 24.2 5.5 41 146-191 20-60 (70)
76 1xqo_A 8-oxoguanine DNA glycos 60.2 29 0.00099 29.7 7.4 125 88-228 54-205 (256)
77 3c1y_A DNA integrity scanning 59.6 12 0.0004 34.1 5.2 38 145-188 327-364 (377)
78 2nrt_A Uvrabc system protein C 58.9 10 0.00035 31.9 4.4 36 105-144 182-217 (220)
79 3bzc_A TEX; helix-turn-helix, 58.4 11 0.00036 37.8 5.1 75 120-212 505-589 (785)
80 3sgi_A DNA ligase; HET: DNA AM 58.0 2.1 7.2E-05 41.6 0.0 23 169-191 559-581 (615)
81 1b22_A DNA repair protein RAD5 57.8 15 0.00051 27.5 4.7 49 132-192 31-79 (114)
82 3r8n_M 30S ribosomal protein S 57.6 8 0.00027 29.0 3.2 24 168-191 13-36 (114)
83 2bgw_A XPF endonuclease; hydro 57.3 14 0.00048 30.5 5.1 42 102-146 173-214 (219)
84 1skn_P DNA-binding domain of S 54.9 36 0.0012 24.2 6.0 39 113-151 32-70 (92)
85 1u9l_A Transcription elongatio 52.8 34 0.0011 23.1 5.5 31 157-191 29-59 (70)
86 3b0x_A DNA polymerase beta fam 52.1 53 0.0018 31.3 8.9 63 123-191 11-73 (575)
87 1b22_A DNA repair protein RAD5 52.1 9.3 0.00032 28.6 2.8 46 103-151 37-83 (114)
88 3j20_O 30S ribosomal protein S 51.8 10 0.00036 29.8 3.1 24 168-191 20-43 (148)
89 3u5c_S 40S ribosomal protein S 51.1 8.6 0.00029 30.2 2.5 23 169-191 28-50 (146)
90 2kz5_A Transcription factor NF 51.1 45 0.0015 23.7 6.0 39 113-151 36-74 (91)
91 3iz6_M 40S ribosomal protein S 50.8 11 0.00038 29.7 3.1 24 168-191 25-48 (152)
92 1z3e_B DNA-directed RNA polyme 50.8 35 0.0012 23.3 5.3 49 129-189 11-59 (73)
93 2xzm_M RPS18E; ribosome, trans 47.3 14 0.00047 29.3 3.1 24 168-191 27-50 (155)
94 2lz1_A Nuclear factor erythroi 45.1 48 0.0016 23.6 5.3 36 113-148 36-71 (90)
95 3gfk_B DNA-directed RNA polyme 44.4 41 0.0014 23.4 4.9 49 129-189 18-66 (79)
96 3bq7_A Diacylglycerol kinase d 43.5 34 0.0012 23.5 4.5 53 116-180 6-58 (81)
97 1xg7_A Hypothetical protein; s 40.9 1E+02 0.0034 26.3 7.7 144 89-248 58-228 (250)
98 3psf_A Transcription elongatio 40.2 70 0.0024 33.0 7.9 71 114-191 659-737 (1030)
99 3c65_A Uvrabc system protein C 40.1 6 0.0002 33.4 0.0 37 105-145 187-223 (226)
100 2nrt_A Uvrabc system protein C 37.7 22 0.00074 29.8 3.1 25 169-194 166-190 (220)
101 2vqe_M 30S ribosomal protein S 37.7 14 0.0005 28.1 1.8 22 168-189 14-35 (126)
102 3k4g_A DNA-directed RNA polyme 37.2 63 0.0022 22.8 5.0 49 129-189 14-62 (86)
103 3psi_A Transcription elongatio 37.1 83 0.0028 33.1 7.9 71 114-191 656-734 (1219)
104 1kw4_A Polyhomeotic; SAM domai 35.1 48 0.0016 23.3 4.2 54 116-181 13-67 (89)
105 1exn_A 5'-exonuclease, 5'-nucl 34.5 17 0.00057 31.9 1.9 15 175-189 207-221 (290)
106 1pk1_B Sex COMB on midleg CG94 33.6 50 0.0017 23.3 4.1 53 117-181 14-68 (89)
107 3rfa_A Ribosomal RNA large sub 33.2 73 0.0025 29.1 6.1 55 116-175 19-73 (404)
108 1vq8_Y 50S ribosomal protein L 32.2 9.5 0.00033 32.5 0.0 47 132-190 21-67 (241)
109 3c65_A Uvrabc system protein C 32.2 9.5 0.00033 32.2 0.0 17 171-188 205-221 (226)
110 3q8k_A Flap endonuclease 1; he 29.1 23 0.00077 31.7 1.9 15 175-189 236-250 (341)
111 3psf_A Transcription elongatio 28.8 23 0.00079 36.5 2.2 43 132-188 723-765 (1030)
112 3psi_A Transcription elongatio 27.2 32 0.0011 36.2 2.8 44 132-189 720-763 (1219)
113 2f3n_A SH3 and multiple ankyri 25.5 1.4E+02 0.0047 19.9 5.1 42 118-169 3-44 (76)
114 3e1s_A Exodeoxyribonuclease V, 24.9 18 0.00061 34.7 0.5 55 123-189 8-62 (574)
115 2owo_A DNA ligase; protein-DNA 23.8 62 0.0021 31.7 4.1 41 103-146 524-564 (671)
116 1coo_A RNA polymerase alpha su 23.4 51 0.0018 23.9 2.6 49 129-189 26-74 (98)
117 2kvu_A MKL/myocardin-like prot 23.3 46 0.0016 22.9 2.2 39 113-151 22-62 (75)
118 1rxw_A Flap structure-specific 23.1 36 0.0012 30.1 2.1 16 174-189 238-253 (336)
119 3bqs_A Uncharacterized protein 23.1 48 0.0016 23.7 2.4 23 171-193 4-26 (93)
120 2rnn_A E3 SUMO-protein ligase 22.8 98 0.0034 23.0 4.1 37 115-151 35-73 (114)
121 1dgs_A DNA ligase; AMP complex 22.4 96 0.0033 30.3 5.1 41 103-146 519-559 (667)
122 1zrj_A E1B-55KDA-associated pr 22.3 40 0.0014 21.2 1.6 36 116-151 9-46 (50)
123 3ory_A Flap endonuclease 1; hy 22.2 38 0.0013 30.5 2.0 15 175-189 255-269 (363)
124 2fe3_A Peroxide operon regulat 22.0 2.5E+02 0.0087 21.0 6.8 57 123-189 7-64 (145)
125 2izo_A FEN1, flap structure-sp 21.9 39 0.0013 30.1 2.0 18 173-190 235-253 (346)
126 1a76_A Flap endonuclease-1 pro 21.2 42 0.0014 29.5 2.1 16 175-190 229-244 (326)
127 3qe9_Y Exonuclease 1; exonucle 21.0 42 0.0014 30.0 2.1 15 175-189 229-243 (352)
No 1
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00 E-value=1.5e-49 Score=346.37 Aligned_cols=206 Identities=24% Similarity=0.292 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHhhCCChhhhHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 023471 29 EECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLK 108 (281)
Q Consensus 29 ~~~~~v~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~ 108 (281)
+.+.++++.|.++||...++- ...|+||+||++||+|||++++|..++.+|+
T Consensus 8 ~~~~~i~~~L~~~y~~~~~~l----------------------------~~~~pfe~Lv~~IlsQqts~~~v~~~~~~l~ 59 (226)
T 1orn_A 8 QQIRYCLDEMAKMFPDAHCEL----------------------------VHRNPFELLIAVVLSAQCTDALVNKVTKRLF 59 (226)
T ss_dssp HHHHHHHHHHHHHCTTCCCCS----------------------------CCSSHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccCCCC----------------------------CCCCHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 678899999999999865311 2579999999999999999999999999999
Q ss_pred hhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHH
Q 023471 109 STFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188 (281)
Q Consensus 109 ~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il 188 (281)
+.||||++|+++++++|+++|+++||+++||++|+++|+.+.++||+ +.++++++|++|||||+|||++|+
T Consensus 60 ~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g---------~~p~~~~~L~~lpGIG~~TA~~il 130 (226)
T 1orn_A 60 EKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG---------EVPRDRDELMKLPGVGRKTANVVV 130 (226)
T ss_dssp HHCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTT---------SCCSCHHHHTTSTTCCHHHHHHHH
T ss_pred HHCCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC---------CcHHHHHHHHHCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876 456789999999999999999999
Q ss_pred HHhcCCCccccchHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCcccHHHHHHHHHHhcccCCCCcCCCCCCCcCCCCCCC
Q 023471 189 MFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNL 268 (281)
Q Consensus 189 ~~~~~~~~~~vD~~v~Ri~~rlG~~~~~~~~~~~~~~l~~~~p~~~~~~~h~~lv~~G~~c~~C~~~~~p~~p~~~~C~~ 268 (281)
+|++|+++||||+|+.|++.|+|+++...++++++..+++++|++.|.++|++||+||+. +|++++ | + |+.
T Consensus 131 ~~a~g~~~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~lv~~G~~--~C~~~~-P---~---C~~ 201 (226)
T 1orn_A 131 SVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRY--HCKAQS-P---Q---CPS 201 (226)
T ss_dssp HHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH--TSCSSC-C---C---GGG
T ss_pred HHHCCCceeeeCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHHH--HcCCCC-C---C---CCC
Confidence 999999999999999999999999876789999999999999999999999999999999 999884 4 3 999
Q ss_pred CCChhhcccccC
Q 023471 269 CPLLNYCEKSNK 280 (281)
Q Consensus 269 Cpl~~~C~~~~~ 280 (281)
|||++.|++|.+
T Consensus 202 Cpl~~~C~~~~~ 213 (226)
T 1orn_A 202 CPLLHLCREGKK 213 (226)
T ss_dssp CTTGGGCHHHHH
T ss_pred CCChhhhhhHhh
Confidence 999999998753
No 2
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=100.00 E-value=5.3e-49 Score=339.87 Aligned_cols=206 Identities=25% Similarity=0.334 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHhhCCChhhhHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 023471 29 EECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLK 108 (281)
Q Consensus 29 ~~~~~v~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~ 108 (281)
.+..++++.|.++||...++ | +..|+||+||++||+|||+++++..++.+|+
T Consensus 4 ~~~~~i~~~L~~~~~~~~~~--~--------------------------~~~~pfe~lv~~Il~qqts~~~v~~~~~~l~ 55 (211)
T 2abk_A 4 AKRLEILTRLRENNPHPTTE--L--------------------------NFSSPFELLIAVLLSAQATDVSVNKATAKLY 55 (211)
T ss_dssp HHHHHHHHHHHHHCSSCCCS--S--------------------------CCSSHHHHHHHHHHTTTSCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCCcC--C--------------------------CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46678999999999986531 1 3689999999999999999999999999999
Q ss_pred hhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHH
Q 023471 109 STFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188 (281)
Q Consensus 109 ~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il 188 (281)
+.||||++|+++++++|.++|+++||+++||++|+++|+.+.+.+++ +.++++++|++|||||+|||++|+
T Consensus 56 ~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g---------~~~~~~~~L~~l~GIG~~tA~~il 126 (211)
T 2abk_A 56 PVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG---------EVPEDRAALEALPGVGRKTANVVL 126 (211)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT---------SCCSCHHHHHHSTTCCHHHHHHHH
T ss_pred HHCCCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC---------CchHHHHHHHhCCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999998776 456789999999999999999999
Q ss_pred HHhcCCCccccchHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCcccHHHHHHHHHHhcccCCCCcCCCCCCCcCCCCCCC
Q 023471 189 MFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNL 268 (281)
Q Consensus 189 ~~~~~~~~~~vD~~v~Ri~~rlG~~~~~~~~~~~~~~l~~~~p~~~~~~~h~~lv~~G~~c~~C~~~~~p~~p~~~~C~~ 268 (281)
+|++|+++||||+|+.|++.|+|+.. ..++++++..+++++|++.+.+||++|++||+. +|++++ | + |+.
T Consensus 127 ~~~~~~~~~~vD~~v~Rv~~rlgl~~-~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~--~C~~~~-P---~---C~~ 196 (211)
T 2abk_A 127 NTAFGWPTIAVDTHIFRVCNRTQFAP-GKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRY--TCIARK-P---R---CGS 196 (211)
T ss_dssp HHHHCCCCCCCCHHHHHHHHHHCSSC-CSSHHHHHHHHHHHSCGGGTTTHHHHHHHHHHH--TSCSSS-C---C---GGG
T ss_pred HHHCCCCcCCcCHHHHHHHHHhCCCC-CCCHHHHHHHHHHhcChhhHHHHHHHHHHHHHH--HCCCCC-C---C---CCC
Confidence 99999999999999999999999864 578999999999999999999999999999999 999884 4 3 999
Q ss_pred CCChhhcccccCC
Q 023471 269 CPLLNYCEKSNKT 281 (281)
Q Consensus 269 Cpl~~~C~~~~~~ 281 (281)
|||++.|+++.++
T Consensus 197 Cpl~~~C~~~~~~ 209 (211)
T 2abk_A 197 CIIEDLCEYKEKV 209 (211)
T ss_dssp CTTGGGCCCTTCS
T ss_pred CCChhhCCCcCcC
Confidence 9999999998753
No 3
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.5e-48 Score=345.50 Aligned_cols=226 Identities=15% Similarity=0.200 Sum_probs=196.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhCCChhhhHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhhhcc
Q 023471 17 QDPYPTHSRPTAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTT 96 (281)
Q Consensus 17 ~~p~p~~~~p~~~~~~~v~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fe~Lv~~ILsqqts 96 (281)
.+|| |.-.+++++..+.+.|.+||...++..+||+..... ..+..|+|++||++||+|||+
T Consensus 3 ~~~~--~~~~~~~~~~~~~~~ll~Wy~~~~R~lPWR~~~~~~-----------------~d~~~dpfe~LVs~ILsQQts 63 (287)
T 3n5n_X 3 VSSY--HLFRDVAEVTAFRGSLLSWYDQEKRDLPWRRRAEDE-----------------MDLDRRAYAVWVSEVMLQQTQ 63 (287)
T ss_dssp -CCT--TSCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC-----------------CSHHHHHHHHHHHHHHHHTSC
T ss_pred CCcc--cccCCHHHHHHHHHHHHHHHHHcCCCCCCcCcCccc-----------------cCCCCCHHHHHHHHHHhCCCc
Confidence 3454 444566889999999999999888888997632110 012468999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhc-
Q 023471 97 EANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSR- 175 (281)
Q Consensus 97 ~~~a~~~~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~- 175 (281)
++++..++.+|+++|||+++|++++.++|+++|+++||++ ||++|+++|+.+.++||| ..++.+++|++
T Consensus 64 ~~~v~~~~~rL~~~fptpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~~i~~~~~g---------~~p~~~~~Ll~~ 133 (287)
T 3n5n_X 64 VATVINYYTGWMQKWPTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELGG---------HMPRTAETLQQL 133 (287)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHSTT---------CCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCC---------CCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 999999999999998887 34557899998
Q ss_pred CcCccHHHHHHHHHHhcCCCccccchHHHHHHHHhCCCCCCCCHHHHHHHH----HhhCCcccHHHHHHHHHHhcccCCC
Q 023471 176 FRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHL----NQRIPKELKFDLNCLLYTHGKLCRN 251 (281)
Q Consensus 176 l~GIG~~tA~~il~~~~~~~~~~vD~~v~Ri~~rlG~~~~~~~~~~~~~~l----~~~~p~~~~~~~h~~lv~~G~~c~~ 251 (281)
|||||+|||++||+|+||+++|+||+||+|++.|+|+++...++.++++.+ +..+|.+.+.+||++||+||+. +
T Consensus 134 LpGIG~kTA~~iL~~a~g~p~~~VDt~V~Rv~~Rlg~i~~~~~~~~~~~~l~~~a~~~lp~~~~~~~h~~L~~~Gr~--i 211 (287)
T 3n5n_X 134 LPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGAT--V 211 (287)
T ss_dssp STTCCHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH--T
T ss_pred cCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhHH--H
Confidence 999999999999999999999999999999999999987556666665554 6789999999999999999999 9
Q ss_pred CcCCCCCCCcCCCCCCCCCChhhcccccC
Q 023471 252 CIKKGGNRQRKESAGNLCPLLNYCEKSNK 280 (281)
Q Consensus 252 C~~~~~p~~p~~~~C~~Cpl~~~C~~~~~ 280 (281)
|++++ | + |+.|||++.|++|.+
T Consensus 212 C~~r~-P---~---C~~Cpl~~~C~~~~~ 233 (287)
T 3n5n_X 212 CTPQR-P---L---CSQCPVESLCRARQR 233 (287)
T ss_dssp SCSSS-C---C---TTSCTTGGGCHHHHH
T ss_pred cCCCC-C---C---CCCCCChhhhHHHHh
Confidence 99984 4 3 999999999999853
No 4
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=100.00 E-value=8.6e-48 Score=334.39 Aligned_cols=211 Identities=16% Similarity=0.241 Sum_probs=186.5
Q ss_pred CHHHHHHHHHHHHHhhCCChhhhHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhhhccHHHHHHHHHH
Q 023471 27 TAEECRGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFAS 106 (281)
Q Consensus 27 ~~~~~~~v~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fe~Lv~~ILsqqts~~~a~~~~~~ 106 (281)
+++.+..+.+.|.+||...+...+| ....|+||+||++||+|||+++++.+++.+
T Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~pw-------------------------~~~~~pfe~lv~~IlsQqts~~~~~~~~~~ 59 (221)
T 1kea_A 5 TNKKRKVFVSTILTFWNTDRRDFPW-------------------------RHTRDPYVILITEILLRRTTAGHVKKIYDK 59 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCGG-------------------------GGCCCHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhCcC-------------------------CCCCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 5677888899999988665442224 246899999999999999999999999999
Q ss_pred HHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHH
Q 023471 107 LKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVAC 186 (281)
Q Consensus 107 L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~ 186 (281)
|.+.||||++|+++++++|.++|+++||+++||++|+++|+.+.+.+++ +.++++++|++|||||+|||++
T Consensus 60 l~~~fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g---------~~p~~~~~L~~lpGIG~~TA~~ 130 (221)
T 1kea_A 60 FFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGG---------RVPRNRKAILDLPGVGKYTCAA 130 (221)
T ss_dssp HHHHCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTT---------SCCSCHHHHHTSTTCCHHHHHH
T ss_pred HHHHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhCC---------CchHHHHHHHhCCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999998876 4567899999999999999999
Q ss_pred HHHHhcCCCccccchHHHHHHHHh-CCCCCCCC--HHHHHHHHHhhCCcccHHHHHHHHHHhcccCCCCcCCCCCCCcCC
Q 023471 187 VLMFHLQQDDFPVDTHVFEISKAI-GWVPTAAD--RNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKE 263 (281)
Q Consensus 187 il~~~~~~~~~~vD~~v~Ri~~rl-G~~~~~~~--~~~~~~~l~~~~p~~~~~~~h~~lv~~G~~c~~C~~~~~p~~p~~ 263 (281)
|++|++|+++|+||+|++|++.|+ |+...... ..++...++.++|++.|.+||++||+||+. +|++++ | +
T Consensus 131 il~~~~~~~~~~vD~~v~Rv~~rl~gl~~~~~~~~~~~l~~~ae~~~P~~~~~~~~~~lv~~G~~--~C~~~~-P---~- 203 (221)
T 1kea_A 131 VMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAI--ICAPRK-P---K- 203 (221)
T ss_dssp HHHHTTCCCCCCCCHHHHHHHHHHHCGGGTTCCTTSHHHHHHHHHHSCTTCHHHHHHHHHHHHHH--TSCSSS-C---C-
T ss_pred HHHHhcCCCcceecHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH--HcCCCC-C---C-
Confidence 999999999999999999999998 98643222 346777788999999999999999999999 999984 4 3
Q ss_pred CCCCCCCChhhcccccC
Q 023471 264 SAGNLCPLLNYCEKSNK 280 (281)
Q Consensus 264 ~~C~~Cpl~~~C~~~~~ 280 (281)
|+.|||++.|++|..
T Consensus 204 --C~~Cpl~~~C~~~~~ 218 (221)
T 1kea_A 204 --CEKCGMSKLCSYYEK 218 (221)
T ss_dssp --GGGCTTTTTCHHHHT
T ss_pred --CCCCCChhhchhhhc
Confidence 999999999998764
No 5
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=100.00 E-value=1.2e-45 Score=321.79 Aligned_cols=183 Identities=20% Similarity=0.218 Sum_probs=165.5
Q ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHHHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCc
Q 023471 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC 157 (281)
Q Consensus 78 ~~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~ 157 (281)
...|+||+||++||+|||+++++.+++.+|++.||||++|+++++++|.++|+++||+ +||++|+++|+.+.+++++
T Consensus 26 ~~~~pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~pt~~~la~~~~~~l~~~i~~~G~~-~kA~~l~~~a~~i~~~~~g-- 102 (225)
T 1kg2_A 26 IDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQQVATLHGG-- 102 (225)
T ss_dssp SSCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCSSHHHHHHSCHHHHHHHHTTSCCT-HHHHHHHHHHHHHHHHSTT--
T ss_pred CCCCHHHHHHHHHHHCcCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHhCChH-HHHHHHHHHHHHHHHHhCC--
Confidence 4689999999999999999999999999999999999999999999999999999999 5999999999999998776
Q ss_pred hHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHhcCCCccccchHHHHHHHHhCCCCCCCC----HHHHHHHHHhhCCcc
Q 023471 158 LEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAAD----RNKTYLHLNQRIPKE 233 (281)
Q Consensus 158 l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Ri~~rlG~~~~~~~----~~~~~~~l~~~~p~~ 233 (281)
+.++++++|++|||||+|||++||+|++|+++|+||+||+|++.|+|++....+ +++++..++.++|++
T Consensus 103 -------~~p~~~~~L~~lpGIG~~TA~~il~~a~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~l~~~~~~~~p~~ 175 (225)
T 1kg2_A 103 -------KFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAV 175 (225)
T ss_dssp -------SCCCSHHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHCCST
T ss_pred -------CchHHHHHHhcCCCCcHHHHHHHHHHhCCCCcceeCHHHHHHHHHHcCCCCCCCccchHHHHHHHHHHHCCcc
Confidence 345679999999999999999999999999999999999999999965543332 445566677899999
Q ss_pred cHHHHHHHHHHhcccCCCCcCCCCCCCcCCCCCCCCCChhhccccc
Q 023471 234 LKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGNLCPLLNYCEKSN 279 (281)
Q Consensus 234 ~~~~~h~~lv~~G~~c~~C~~~~~p~~p~~~~C~~Cpl~~~C~~~~ 279 (281)
.+.+||++||+||+. +|++++ | + |+.|||++.|++|.
T Consensus 176 ~~~~~~~~lv~~G~~--~C~~~~-P---~---C~~Cpl~~~C~~~~ 212 (225)
T 1kg2_A 176 GVERFNQAMMDLGAM--ICTRSK-P---K---CSLCPLQNGCIAAA 212 (225)
T ss_dssp THHHHHHHHHHHHHH--TSCSSS-C---C---GGGCTTTTTCHHHH
T ss_pred cHHHHHHHHHHHHHH--HcCCCC-C---C---CCCCCChhhCHHHH
Confidence 999999999999999 999884 4 3 99999999999975
No 6
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=100.00 E-value=1.5e-44 Score=336.49 Aligned_cols=205 Identities=21% Similarity=0.293 Sum_probs=184.7
Q ss_pred HHHHHHHHHhhCCChhhhHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhhhccHHHHHHHHHHHHhhC
Q 023471 32 RGIRDELLALHGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF 111 (281)
Q Consensus 32 ~~v~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~~~ 111 (281)
.++.+.|.+||...++..+| ....|||++||++||+|||+++++..++.+|+++|
T Consensus 14 ~~~~~~l~~w~~~~~r~lpw-------------------------~~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~ 68 (369)
T 3fsp_A 14 REFQRDLLDWFARERRDLPW-------------------------RKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF 68 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCGG-------------------------GSCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCC-------------------------CCCCChHHHHHHHHHhccCcHHHHHHHHHHHHHHC
Confidence 45888999988765554445 24789999999999999999999999999999999
Q ss_pred CCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHh
Q 023471 112 PTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 112 pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
||+++|++++.++|.++|+++||++ ||++|+++|+.+.++||+ +.++++++|++|||||+|||++||+|+
T Consensus 69 pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~~~~~~~g---------~~p~~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 69 PTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKTRYGG---------KVPDDPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp CSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHHHHHHHTT---------CCCCSHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHCCCHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHcCC---------CChhHHHHHhcCCCcCHHHHHHHHHHH
Confidence 9999999999999999999999998 999999999999998887 456789999999999999999999999
Q ss_pred cCCCccccchHHHHHHHHhCCCCCCC----CHHHHHHHHHhhCCcccHHHHHHHHHHhcccCCCCcCCCCCCCcCCCCCC
Q 023471 192 LQQDDFPVDTHVFEISKAIGWVPTAA----DRNKTYLHLNQRIPKELKFDLNCLLYTHGKLCRNCIKKGGNRQRKESAGN 267 (281)
Q Consensus 192 ~~~~~~~vD~~v~Ri~~rlG~~~~~~----~~~~~~~~l~~~~p~~~~~~~h~~lv~~G~~c~~C~~~~~p~~p~~~~C~ 267 (281)
||+++|+||+||+|++.|+|+++... ++.+++..++.++|.+.+.+||++||+||+. +|++++ | + |+
T Consensus 139 ~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~--~C~~~~-P---~---C~ 209 (369)
T 3fsp_A 139 YGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAYENPGAFNEALIELGAL--VCTPRR-P---S---CL 209 (369)
T ss_dssp HCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHH--TSCSSS-C---C---TT
T ss_pred CCCCcccccHHHHHHHHHHcCcccCccccchHHHHHHHHHHhCChhhHHHHHHHHHHHHHH--hcCCCC-C---C---CC
Confidence 99999999999999999999986543 3566777889999999999999999999999 999984 4 3 99
Q ss_pred CCCChhhcccccC
Q 023471 268 LCPLLNYCEKSNK 280 (281)
Q Consensus 268 ~Cpl~~~C~~~~~ 280 (281)
.|||++.|.+|..
T Consensus 210 ~Cpl~~~C~~~~~ 222 (369)
T 3fsp_A 210 LCPVQAYCQAFAE 222 (369)
T ss_dssp TCTTGGGCHHHHH
T ss_pred CCCChhhhHHHhc
Confidence 9999999998753
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=100.00 E-value=6.5e-40 Score=284.06 Aligned_cols=185 Identities=17% Similarity=0.198 Sum_probs=164.9
Q ss_pred HHHHHHHHHHh-hCCChhhhHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhhhccHHHHHHHHHHHHh
Q 023471 31 CRGIRDELLAL-HGFPPEFVKYRNQRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLKS 109 (281)
Q Consensus 31 ~~~v~~~L~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~ 109 (281)
..++.+.|.++ |+..+... | .+..|+||+||++||||||+++++.+++.+|.+
T Consensus 4 ~~~i~~~L~~~~~~~~~~~~-~-------------------------~~~~dpfe~Lv~~ILsQqts~~~v~~~~~~L~~ 57 (218)
T 1pu6_A 4 SFEILKALKSLDLLKNAPAW-W-------------------------WPNALKFEALLGAVLTQNTKFEAVLKSLENLKN 57 (218)
T ss_dssp HHHHHHHHHTTTTTTTSCTT-S-------------------------STTTTSHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcccCCCc-C-------------------------CCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 46788899998 86644311 2 246899999999999999999999999999999
Q ss_pred h-CCC------HHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHH
Q 023471 110 T-FPT------WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPK 182 (281)
Q Consensus 110 ~-~pt------~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~ 182 (281)
+ ||| |++|++++.++|+++|+++||+++||++|+++|+.+.++++++ +.+ +.++++++|++|||||+|
T Consensus 58 ~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~i~~~~~~l--~~~---~~~~~~~~L~~lpGIG~k 132 (218)
T 1pu6_A 58 AFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSF--ENF---KQEVTREWLLDQKGIGKE 132 (218)
T ss_dssp TTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHSSH--HHH---HHHCCHHHHHTSTTCCHH
T ss_pred ccCCCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhcCCh--hhc---cchHHHHHHHcCCCcCHH
Confidence 9 999 9999999999999999999999999999999999999988763 333 567889999999999999
Q ss_pred HHHHHHHHhcCCCccccchHHHHHHHHhCCCCCCCCHHHHHHHHHh----hCC------------cccHHHHHHHHHHhc
Q 023471 183 TVACVLMFHLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQ----RIP------------KELKFDLNCLLYTHG 246 (281)
Q Consensus 183 tA~~il~~~~~~~~~~vD~~v~Ri~~rlG~~~~~~~~~~~~~~l~~----~~p------------~~~~~~~h~~lv~~G 246 (281)
||++|++|++|+++||||+|++|++.|+|+. ..+++++++.+++ ++| .+.|.+||.+||+||
T Consensus 133 TA~~il~~a~~~~~~~vD~~v~Ri~~rlg~~--~~~~~~~~~~l~~~~p~~lp~~~~~~~~~~~~~~~~~~~h~liv~~G 210 (218)
T 1pu6_A 133 SADAILCYACAKEVMVVDKYSYLFLKKLGIE--IEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFS 210 (218)
T ss_dssp HHHHHHHHTTCCSCCCCCHHHHHHHHHTTCC--CCSHHHHHHHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCccccCHHHHHHHHHcCCC--CCCHHHHHHHHHHhhhhcCcchhhhcccccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999996 4799999999998 666 356899999999999
Q ss_pred cc
Q 023471 247 KL 248 (281)
Q Consensus 247 ~~ 248 (281)
|.
T Consensus 211 k~ 212 (218)
T 1pu6_A 211 KQ 212 (218)
T ss_dssp HH
T ss_pred hh
Confidence 86
No 8
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=100.00 E-value=2.6e-33 Score=244.95 Aligned_cols=164 Identities=16% Similarity=0.206 Sum_probs=149.3
Q ss_pred CCCHHHHHHHHHHhhhccHHHHHHHHHHHHhhC----CCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcC
Q 023471 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTF----PTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKG 154 (281)
Q Consensus 79 ~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~~~----pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g 154 (281)
..|+||+||++||+|||+++++..++.+|.++| |||++|+++++++| +++||+++||++|+++|+.+.+ |
T Consensus 48 ~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~L----r~~G~~~~KA~~I~~~A~~i~~--~ 121 (233)
T 2h56_A 48 KPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEAL----RQAGVSKRKIEYIRHVCEHVES--G 121 (233)
T ss_dssp CSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHH----HHTTCCHHHHHHHHHHHHHHHT--T
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHh--C
Confidence 689999999999999999999999999999985 69999999998875 8899999999999999999998 5
Q ss_pred CCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHhcCC-CccccchHHHHHHHHhCCCC-CCCCHHHHHHHHHhhCCc
Q 023471 155 KLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAIGWVP-TAADRNKTYLHLNQRIPK 232 (281)
Q Consensus 155 ~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~~~~-~~~~vD~~v~Ri~~rlG~~~-~~~~~~~~~~~l~~~~p~ 232 (281)
.++++.+.+++.++++++|++|||||+|||++||+|++|+ ++||||+|+.|++.++++.. ...++++++..++.+.|.
T Consensus 122 ~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvdd~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~P~ 201 (233)
T 2h56_A 122 RLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAPY 201 (233)
T ss_dssp SSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSSSCSCHHHHHHHHHGGGTTC
T ss_pred CCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCchHHHHHHHHHhccCCCCCCHHHHHHHHHHcCcH
Confidence 5688989888999999999999999999999999999999 59999999999998877643 346888999999999999
Q ss_pred ccHHHHHHHHHHhccc
Q 023471 233 ELKFDLNCLLYTHGKL 248 (281)
Q Consensus 233 ~~~~~~h~~lv~~G~~ 248 (281)
..+..+|.|.++.+..
T Consensus 202 ~~~a~~~lw~~~~~~~ 217 (233)
T 2h56_A 202 ETVACLYLWKAAGTFA 217 (233)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcccccc
Confidence 9999999888876654
No 9
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=100.00 E-value=8.9e-33 Score=241.05 Aligned_cols=158 Identities=16% Similarity=0.243 Sum_probs=146.8
Q ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHHHHHHhh------CCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHH
Q 023471 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKST------FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLE 151 (281)
Q Consensus 78 ~~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~~------~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~ 151 (281)
...|+||+||++||+|||+++++..++.+|.++ ||||++|+.+++++ |+.+||+++||++|+++|+.+.+
T Consensus 56 ~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~----Lr~~Gl~~~Ka~~l~~~A~~~~~ 131 (232)
T 4b21_A 56 PEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVET----LHECGFSKLKSQEIHIVAEAALN 131 (232)
T ss_dssp TTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHH----HHTTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHH----HHHcCCcHHHHHHHHHHHHHHHh
Confidence 367999999999999999999999999999998 89999999999887 47899999999999999999998
Q ss_pred HcCCC-chHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHhcCC-Ccccc-chHHHHHHHHhCCCCCCCCHHHHHHHHHh
Q 023471 152 SKGKL-CLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPV-DTHVFEISKAIGWVPTAADRNKTYLHLNQ 228 (281)
Q Consensus 152 ~~g~~-~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~~~~-~~~~v-D~~v~Ri~~rlG~~~~~~~~~~~~~~l~~ 228 (281)
|.+ +++.+.+++.++++++|++|||||+|||++|++|++|+ ++||| |+||+|++.+++..+...++++++...+.
T Consensus 132 --g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D~~v~r~~~rl~~~~~~~~~~~~~~~~e~ 209 (232)
T 4b21_A 132 --KQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTKP 209 (232)
T ss_dssp --TCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSCCCHHHHHHHTGG
T ss_pred --CCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 888 89999999999999999999999999999999999999 79999 99999999998666666788999999999
Q ss_pred hCCcccHHHHHHH
Q 023471 229 RIPKELKFDLNCL 241 (281)
Q Consensus 229 ~~p~~~~~~~h~~ 241 (281)
|-|...+..+|.|
T Consensus 210 w~P~rs~A~~yLw 222 (232)
T 4b21_A 210 CKPYRTIAAWYLW 222 (232)
T ss_dssp GTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 9999888888776
No 10
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=100.00 E-value=1.2e-32 Score=239.39 Aligned_cols=152 Identities=18% Similarity=0.175 Sum_probs=141.1
Q ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHHHHHHhhC--CCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCC
Q 023471 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTF--PTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGK 155 (281)
Q Consensus 78 ~~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~~~--pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~ 155 (281)
...|+||+||++||+|||+++++..++.+|.++| |||++|+++++++| +.+||+++||++|+++|+.+.+ |.
T Consensus 57 ~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~L----r~~G~~~~KA~~i~~lA~~~~~--g~ 130 (225)
T 2yg9_A 57 PTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDL----RGVGLSWAKVRTVQAAAAAAVS--GQ 130 (225)
T ss_dssp CCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHH----HHTTCCHHHHHHHHHHHHHHHT--TS
T ss_pred CCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHH----HHCCCcHHHHHHHHHHHHHHHh--CC
Confidence 4689999999999999999999999999999999 89999999998875 7899999999999999999998 77
Q ss_pred CchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHhcCC-Ccccc-chHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCcc
Q 023471 156 LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPV-DTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKE 233 (281)
Q Consensus 156 ~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~~~~-~~~~v-D~~v~Ri~~rlG~~~~~~~~~~~~~~l~~~~p~~ 233 (281)
++++.+.+++.++++++|++|||||+|||++|++|++|+ ++||| |+|++|++.++| + .++++...+.+.|..
T Consensus 131 ~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fpv~D~~v~r~~~~l~--~----~~~~~~~~e~~~P~r 204 (225)
T 2yg9_A 131 IDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERLY--P----GEDWRDVTARWAPYR 204 (225)
T ss_dssp SCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCCTTCHHHHHHHHHHS--T----TSCHHHHHHHHTTCH
T ss_pred cCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHhC--C----HHHHHHHHHHcCCHH
Confidence 899999999999999999999999999999999999999 69999 999999999998 2 345677789999999
Q ss_pred cHHHHHHH
Q 023471 234 LKFDLNCL 241 (281)
Q Consensus 234 ~~~~~h~~ 241 (281)
.+..+|.|
T Consensus 205 ~~a~~~Lw 212 (225)
T 2yg9_A 205 SLASRYLW 212 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888877
No 11
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-33 Score=242.81 Aligned_cols=159 Identities=17% Similarity=0.179 Sum_probs=138.8
Q ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHHHHHHhhCCCHHHHHhCCHHHHHHHhhhCC--CchHHHHHHHHHHHHHHHHcCC
Q 023471 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG--LAPTKAACIKNILKCLLESKGK 155 (281)
Q Consensus 78 ~~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~~~pt~~~la~~~~eel~~~i~~~G--~~~~KA~~I~~~a~~i~~~~g~ 155 (281)
...|+|++||++||||||+++++.+++.+| ++.|+.+++++|+++|+++| |+++||++|+++|+.+.+.+++
T Consensus 29 ~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~ 102 (207)
T 3fhg_A 29 NEEVWFRELTLCLLTANSSFISAYQALNCL------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKE 102 (207)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHH------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHH
T ss_pred CcCCHHHHHHHHHHcCCCCHHHHHHHHHHH------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhh
Confidence 368999999999999999999999999999 47899999999999999777 8999999999999988653322
Q ss_pred CchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHH-hcCCCccccchHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCccc
Q 023471 156 LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF-HLQQDDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKEL 234 (281)
Q Consensus 156 ~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~-~~~~~~~~vD~~v~Ri~~rlG~~~~~~~~~~~~~~l~~~~p~~~ 234 (281)
+++.+.+++.++++++|++|||||+|||++||+| ++ .++|+||+|++|++.|+|+++.. +...+++..
T Consensus 103 -~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~-~~~~~vD~~v~Ri~~rlg~~~~~---------~~k~~~~k~ 171 (207)
T 3fhg_A 103 -EIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGY-FDLAIIDRHIIDFMRRIGAIGET---------NVKQLSKSL 171 (207)
T ss_dssp -HHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTC-CSSCCCCHHHHHHHHHTTSSCCC---------CCSCCCHHH
T ss_pred -hHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CCcceecHHHHHHHHHcCCCCcc---------ccccCCHHH
Confidence 5777777788899999999999999999999998 55 69999999999999999997642 334556778
Q ss_pred HHHHHHHHHHhcccCCCCcCC
Q 023471 235 KFDLNCLLYTHGKLCRNCIKK 255 (281)
Q Consensus 235 ~~~~h~~lv~~G~~c~~C~~~ 255 (281)
|.++|..|++||+. +|.+.
T Consensus 172 y~~~~~~l~~~~~~--~~~~~ 190 (207)
T 3fhg_A 172 YISFENILKSIASN--LNMSV 190 (207)
T ss_dssp HHHHHHHHHHHHHH--TTSCH
T ss_pred HHHHHHHHHHHHHH--hCCCH
Confidence 89999999999999 77653
No 12
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.98 E-value=3.4e-32 Score=234.00 Aligned_cols=153 Identities=15% Similarity=0.214 Sum_probs=134.2
Q ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHHHHHHhhCCCHHHHHhCCHHHHHHHhhhCC--CchHHHHHHHHHHHHHHHHcCC
Q 023471 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG--LAPTKAACIKNILKCLLESKGK 155 (281)
Q Consensus 78 ~~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~~~pt~~~la~~~~eel~~~i~~~G--~~~~KA~~I~~~a~~i~~~~g~ 155 (281)
...++|++||++||||||+++++.+++.+|. +.|+.+++++|+++|+++| |+++||++|+++++ + +
T Consensus 40 ~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~-~----~- 107 (214)
T 3fhf_A 40 SNEEWFKELCFCILTANFTAEGGIRIQKEIG------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARR-F----K- 107 (214)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGG-G----C-
T ss_pred CCCChHHHHHHHHHcCCCCHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH-h----h-
Confidence 4688999999999999999999999999996 6799999999999999999 99999999999999 3 2
Q ss_pred CchHHHhcC-ChHHHHHHHh-cCcCccHHHHHHHHHHhcCCCccc-cchHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCc
Q 023471 156 LCLEYLRGL-SIDEIKAELS-RFRGIGPKTVACVLMFHLQQDDFP-VDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPK 232 (281)
Q Consensus 156 ~~l~~l~~~-~~~~~~~~L~-~l~GIG~~tA~~il~~~~~~~~~~-vD~~v~Ri~~rlG~~~~~~~~~~~~~~l~~~~p~ 232 (281)
..++.+.++ +.++++++|+ +|||||+|||++||+++ |.+.++ ||+||+|++.|+||++.. + +.+|.
T Consensus 108 ~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~~~~~vVDthv~Ri~~RlG~~~~~--~--------k~lt~ 176 (214)
T 3fhf_A 108 NIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNV-GYDDVAIIDRHILRELYENNYIDEI--P--------KTLSR 176 (214)
T ss_dssp CHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TCCSCCCCCHHHHHHHHHTTSSSSC--C--------SSCCH
T ss_pred HHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCCcccCcHHHHHHHHHcCCCCCC--C--------CcCCH
Confidence 224444454 7899999999 99999999999999998 666666 999999999999998631 1 55677
Q ss_pred ccHHHHHHHHHHhcccCCCCcCC
Q 023471 233 ELKFDLNCLLYTHGKLCRNCIKK 255 (281)
Q Consensus 233 ~~~~~~h~~lv~~G~~c~~C~~~ 255 (281)
..|.++|..|++||+. +|.+.
T Consensus 177 ~~y~e~~~~l~~~g~~--~g~~~ 197 (214)
T 3fhf_A 177 RKYLEIENILRDIGEE--VNLKL 197 (214)
T ss_dssp HHHHHHHHHHHHHHHH--TTCCH
T ss_pred HHHHHHHHHHHHHHHH--HCCCH
Confidence 8899999999999999 89764
No 13
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=99.98 E-value=4.4e-31 Score=229.92 Aligned_cols=157 Identities=22% Similarity=0.305 Sum_probs=142.7
Q ss_pred CC-CHHHHHHHHHHhhhccHHHHHHHHHHHHhhC------CCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHH
Q 023471 79 EE-SVLDGLVKTVLSQNTTEANSLKAFASLKSTF------PTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLE 151 (281)
Q Consensus 79 ~~-~~fe~Lv~~ILsqqts~~~a~~~~~~L~~~~------pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~ 151 (281)
.. |+||+||++||+|||+++++..++.+| +.| |||++|+.++.++| +++||+++||++|+++|+.+.+
T Consensus 46 ~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~L----r~~G~~~rKa~~i~~~A~~~~~ 120 (228)
T 3s6i_A 46 EKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIM----RACGFSARKIDSLKSIAEATIS 120 (228)
T ss_dssp TTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHH----HHHTCCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHc
Confidence 35 999999999999999999999999999 775 89999999998874 7899999999999999999997
Q ss_pred HcCCC-chHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHhcCC-Cccccch-HHHHHHHHhCCCCCCCCHHHHHHHHHh
Q 023471 152 SKGKL-CLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDT-HVFEISKAIGWVPTAADRNKTYLHLNQ 228 (281)
Q Consensus 152 ~~g~~-~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~~~~-~~~~vD~-~v~Ri~~rlG~~~~~~~~~~~~~~l~~ 228 (281)
|.+ +++.+.+++.++++++|++|||||+|||++||+|++|+ ++||||+ +++|++.++...+...+++++....+.
T Consensus 121 --g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD~~v~r~~~~~~~~~~~~~~~~~~~~~e~ 198 (228)
T 3s6i_A 121 --GLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTKMYVLKHSEI 198 (228)
T ss_dssp --TSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSCCCHHHHHHHHGG
T ss_pred --CCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEecccHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 888 79999999999999999999999999999999999999 6999975 578888987655666788999999999
Q ss_pred hCCcccHHHHHHHH
Q 023471 229 RIPKELKFDLNCLL 242 (281)
Q Consensus 229 ~~p~~~~~~~h~~l 242 (281)
|-|...+..+|.|-
T Consensus 199 w~P~r~~A~~yLw~ 212 (228)
T 3s6i_A 199 CAPFRTAAAWYLWK 212 (228)
T ss_dssp GTTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH
Confidence 99999888888664
No 14
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=99.97 E-value=7e-30 Score=229.92 Aligned_cols=161 Identities=23% Similarity=0.348 Sum_probs=143.4
Q ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHHHHHHhh--------------CCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHH
Q 023471 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKST--------------FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143 (281)
Q Consensus 78 ~~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~~--------------~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~ 143 (281)
+..|+||+||++||+|||+++++.+++.+|.++ ||||++|+.+++++|.+ +|++. ||++|+
T Consensus 111 ~~~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~~----~g~g~-Ra~~I~ 185 (290)
T 3i0w_A 111 LRQDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEE----CTAGF-RAKYLK 185 (290)
T ss_dssp CCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHHH----TTCGG-GHHHHH
T ss_pred CCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHHH----cCCch-HHHHHH
Confidence 358999999999999999999999999999986 79999999999988766 67765 899999
Q ss_pred HHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHhcCC-CccccchHHHHHHHHhCCCCCCCCHHHH
Q 023471 144 NILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAIGWVPTAADRNKT 222 (281)
Q Consensus 144 ~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~~~~-~~~~vD~~v~Ri~~rlG~~~~~~~~~~~ 222 (281)
++|+.+.+ |.++++.+.+++.++++++|++|||||+|||++|++|++|+ ++||||+|++|++.|+|+.+ ..+++++
T Consensus 186 ~~A~~i~~--g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r~~~rl~~~~-~~~~~~i 262 (290)
T 3i0w_A 186 DTVDRIYN--GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLYVAP-DVSLKKI 262 (290)
T ss_dssp HHHHHHHT--TSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHTSCT-TCCHHHH
T ss_pred HHHHHHHh--CCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHHHHHHhcCCC-CCCHHHH
Confidence 99999998 77899999999999999999999999999999999999999 79999999999999999865 5789999
Q ss_pred HHHH-HhhCCcccHHHHHHHHHHhccc
Q 023471 223 YLHL-NQRIPKELKFDLNCLLYTHGKL 248 (281)
Q Consensus 223 ~~~l-~~~~p~~~~~~~h~~lv~~G~~ 248 (281)
+..+ +.+-| ..+..+..|+.||+.
T Consensus 263 ~~~~~~~~~p--~~~~A~~~Lw~~~R~ 287 (290)
T 3i0w_A 263 RDFGREKFGS--LSGFAQQYLFYYARE 287 (290)
T ss_dssp HHHHHHHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHhhcch--HHHHHHHHHHHhhhh
Confidence 9888 55544 555666667777765
No 15
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.97 E-value=1.4e-30 Score=214.63 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=109.7
Q ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHHHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCc
Q 023471 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLC 157 (281)
Q Consensus 78 ~~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~ 157 (281)
..+|||++||++||||||+++++..++.+|+++|||+++|++++.++|.++|+++||+++||++|+++++.++.
T Consensus 27 ~~~dP~~vLVs~ILsqQT~~~~v~~~~~~l~~~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~vp------ 100 (161)
T 4e9f_A 27 LFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLT------ 100 (161)
T ss_dssp HTTSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH------
T ss_pred hcCChHHHHHHHHHHhhCcHHHHHHHHHHHHHHCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCcCC------
Confidence 46899999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred hHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHhcCC--CccccchHHHHHHHHh
Q 023471 158 LEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ--DDFPVDTHVFEISKAI 210 (281)
Q Consensus 158 l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~~~~--~~~~vD~~v~Ri~~rl 210 (281)
+.+++|++|||||+||||+|++||+|. .++|+|.+++|++.|+
T Consensus 101 ----------~~~~~L~~LpGVG~yTAdav~~F~~~e~~~V~p~D~~l~r~l~wl 145 (161)
T 4e9f_A 101 ----------KQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWL 145 (161)
T ss_dssp ----------SCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHH
T ss_pred ----------CChhhhhcCCCchHHHHHHHHHHHCCCCCCCCCCcHHHHHHHHHH
Confidence 235679999999999999999999996 8999999999999986
No 16
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.97 E-value=2.6e-30 Score=223.13 Aligned_cols=158 Identities=22% Similarity=0.176 Sum_probs=131.4
Q ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHHHHHHhhCCCHHHHHhCCHHHHHHHhhhCC--CchHHHHHHHHHHHHHHHHcCC
Q 023471 78 EEESVLDGLVKTVLSQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGG--LAPTKAACIKNILKCLLESKGK 155 (281)
Q Consensus 78 ~~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~~~pt~~~la~~~~eel~~~i~~~G--~~~~KA~~I~~~a~~i~~~~g~ 155 (281)
+..++|++||++||||||+++++.+++.+| |+.|+.+++++|+++|+++| |+++||++|+++|+.+ |
T Consensus 46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L------p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~i----g- 114 (219)
T 3n0u_A 46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI------GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLL----G- 114 (219)
T ss_dssp CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH------TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGT----T-
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH------HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHH----H-
Confidence 468899999999999999999999999999 68899999999999999999 9999999999999987 2
Q ss_pred CchHHHhcCChHHHHHHHh-cCcCccHHHHHHHHHHhcCC-CccccchHHHHHHHHhCCCCC---C---CCHHHHHHHHH
Q 023471 156 LCLEYLRGLSIDEIKAELS-RFRGIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAIGWVPT---A---ADRNKTYLHLN 227 (281)
Q Consensus 156 ~~l~~l~~~~~~~~~~~L~-~l~GIG~~tA~~il~~~~~~-~~~~vD~~v~Ri~~rlG~~~~---~---~~~~~~~~~l~ 227 (281)
++..+.+.++++++++|+ ++||||+|||++||+| +|. ++||||+||.|++.|+|+++. . .+|.+++..+.
T Consensus 115 -~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~-~g~~~~~~VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~ 192 (219)
T 3n0u_A 115 -KLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRN-TGVEDLAILDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILR 192 (219)
T ss_dssp -THHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHT-TTCCSCCCCCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHH
T ss_pred -HHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHH-cCCCCeeeecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHH
Confidence 345555678999999999 9999999999999999 887 999999999999999999865 1 23555666655
Q ss_pred hhCCc----ccHHHHHHHHHHhccc
Q 023471 228 QRIPK----ELKFDLNCLLYTHGKL 248 (281)
Q Consensus 228 ~~~p~----~~~~~~h~~lv~~G~~ 248 (281)
++... -...++..|....|+.
T Consensus 193 ~~a~~~g~~~~~ldl~lW~~~~~~v 217 (219)
T 3n0u_A 193 KVAEAFGESPGKFDLYLWYLVKGKV 217 (219)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 44321 1133555666666653
No 17
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=99.96 E-value=2.5e-28 Score=225.52 Aligned_cols=164 Identities=20% Similarity=0.262 Sum_probs=137.3
Q ss_pred CCCHHHHHHHHHHhhhccHHHHHHHHHHHHh---------------hCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHH
Q 023471 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKS---------------TFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIK 143 (281)
Q Consensus 79 ~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~---------------~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~ 143 (281)
..|+||+||++||+|||+++++.+++.+|.+ .||||++|+.++. ++.|+.+||+ .||++|+
T Consensus 149 ~~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~---ee~Lr~~Gl~-~RA~~I~ 224 (360)
T 2xhi_A 149 RQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEV---EAHLRKLGLG-YRARYVS 224 (360)
T ss_dssp CCCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTH---HHHHHHTTCT-THHHHHH
T ss_pred CCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCH---HHHHHHcCCc-HHHHHHH
Confidence 4799999999999999999999999999998 4799999999964 4568889995 6999999
Q ss_pred HHHHHHHHHcCC-CchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHhcCC-CccccchHHHHHHHHh-CCCCCC----
Q 023471 144 NILKCLLESKGK-LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAI-GWVPTA---- 216 (281)
Q Consensus 144 ~~a~~i~~~~g~-~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~~~~-~~~~vD~~v~Ri~~rl-G~~~~~---- 216 (281)
++|+.+.+.+|| ++++.+..++.++++++|++|||||+|||++|++|++|+ ++||||+||.|++.|+ |+....
T Consensus 225 ~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpvDthV~Ri~~r~~gl~~~~~~~k 304 (360)
T 2xhi_A 225 ASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHIAQRDYSWHPTTSQAK 304 (360)
T ss_dssp HHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCSHHHHHHHHHHHCCCCSSCSCS
T ss_pred HHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEecHHHHHHHHHHhCccccccccc
Confidence 999999997766 689999999999999999999999999999999999999 6999999999999995 986521
Q ss_pred -CCH---HHHHH-HHHhhCCcccHHHHHHHHHHhc
Q 023471 217 -ADR---NKTYL-HLNQRIPKELKFDLNCLLYTHG 246 (281)
Q Consensus 217 -~~~---~~~~~-~l~~~~p~~~~~~~h~~lv~~G 246 (281)
.+. .++.. ..+.|-|...+..+|.|-.+..
T Consensus 305 ~~~~~~~~~l~~~~~e~w~p~~~~a~~yLw~~~~~ 339 (360)
T 2xhi_A 305 GPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLR 339 (360)
T ss_dssp SCCHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 112 22222 2345667777777777765553
No 18
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=99.96 E-value=2.9e-28 Score=218.82 Aligned_cols=190 Identities=16% Similarity=0.114 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHhhCCChhhhHHHH-hhhhccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 023471 30 ECRGIRDELLALHGFPPEFVKYRN-QRLKHNMTRDKNSVPLDMNEYDEGEEESVLDGLVKTVLSQNTTEANSLKAFASLK 108 (281)
Q Consensus 30 ~~~~v~~~L~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~ 108 (281)
...++.+.+...++....+..+.. ...- . .. .+........|+||+||++||+|||+++++.+++.+|.
T Consensus 70 ~~~~~~~~~~~~~~ld~d~~~~~~~l~~l----~-~~-----~~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~ 139 (282)
T 1mpg_A 70 VAAECLAKMSRLFDLQCNPQIVNGALGRL----G-AA-----RPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVA 139 (282)
T ss_dssp GHHHHHHHHHHHHTTTCCHHHHHHHHGGG----G-TT-----CTTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCHHHHHHHHHHH----H-HH-----cCCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 356677777777777665544322 1100 0 00 11223334689999999999999999999999999997
Q ss_pred hh-------------CCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhc
Q 023471 109 ST-------------FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSR 175 (281)
Q Consensus 109 ~~-------------~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~ 175 (281)
++ ||||++|+++++++| +.+||+++||++|+++|+.+.+ |.++++.+ ++.++++++|++
T Consensus 140 ~~~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~G~~~~ra~~i~~~A~~~~~--~~~~~~~~--~~~~~~~~~L~~ 211 (282)
T 1mpg_A 140 QLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRAEALIHLANAALE--GTLPMTIP--GDVEQAMKTLQT 211 (282)
T ss_dssp HHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHHHHHHHHHHHHHH--TCSCSSCC--SCHHHHHHHHTT
T ss_pred HHhCCCCCCCCCcccCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHc--CCCCcccc--CCHHHHHHHHhc
Confidence 54 689999999998875 7899999999999999999998 55565554 578899999999
Q ss_pred CcCccHHHHHHHHHHhcCC-CccccchHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCcccHHHHHHHHH
Q 023471 176 FRGIGPKTVACVLMFHLQQ-DDFPVDTHVFEISKAIGWVPTAADRNKTYLHLNQRIPKELKFDLNCLLY 243 (281)
Q Consensus 176 l~GIG~~tA~~il~~~~~~-~~~~vD~~v~Ri~~rlG~~~~~~~~~~~~~~l~~~~p~~~~~~~h~~lv 243 (281)
|||||+|||++|++|++|+ ++||||+|+.| ++++ ..+++++++.++.+.|+..|..+|.|..
T Consensus 212 lpGIG~~TA~~ill~~lg~~d~~pvdd~~~r--~~l~----~~~~~~~~~~~~~~~P~r~~a~~~lw~~ 274 (282)
T 1mpg_A 212 FPGIGRWTANYFALRGWQAKDVFLPDDYLIK--QRFP----GMTPAQIRRYAERWKPWRSYALLHIWYT 274 (282)
T ss_dssp STTCCHHHHHHHHHHHSCCSSCCCTTCHHHH--HHST----TCCHHHHHHHHGGGTTCHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHhCCCCCcCccccHHHH--HHhc----cCCHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999 69999999977 5563 4788999999999999999999998853
No 19
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=99.96 E-value=4.1e-28 Score=219.07 Aligned_cols=199 Identities=22% Similarity=0.220 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHhhCCChhhhHHHHhhhh--ccCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHhhhccHHHHHHHH
Q 023471 29 EECRGIRDELLALHGFPPEFVKYRNQRLK--HNMTRDKNSVPLDMNEYDEGE--EESVLDGLVKTVLSQNTTEANSLKAF 104 (281)
Q Consensus 29 ~~~~~v~~~L~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~fe~Lv~~ILsqqts~~~a~~~~ 104 (281)
.+...+.+.+..+++....+..+ ..... .-.+.-. ..+...... ..|+||+||++||+|||+++++.+++
T Consensus 67 ~~~~~~~~~~~~~fdLd~d~~~~-~~~~~D~~l~~l~~-----~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~ 140 (295)
T 2jhn_A 67 REWEAVRRKLVEYLGLQNPEELY-RFMDGDEKLRMLKN-----RFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLA 140 (295)
T ss_dssp GGHHHHHHHHHHHHTCSCCHHHH-HHHHTSHHHHHHHH-----HTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCCHHHH-HhhccCHHHHHHHH-----HcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHH
Confidence 44677788888888887766655 21100 0000000 001122233 68999999999999999999999999
Q ss_pred HHHHhh--------------CCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHH
Q 023471 105 ASLKST--------------FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIK 170 (281)
Q Consensus 105 ~~L~~~--------------~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~ 170 (281)
.+|.++ ||||++|+++++++| +.+||+++||++|+++|+. | +++.+..++.++++
T Consensus 141 ~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~L----r~~G~~~rKa~~i~~~A~~-----g--~l~~l~~~~~~e~~ 209 (295)
T 2jhn_A 141 AKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGL----RECGLSRRKAELIVEIAKE-----E--NLEELKEWGEEEAY 209 (295)
T ss_dssp HHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHH----HHTTCCHHHHHHHHHHHTC-----S--SGGGGGGSCHHHHH
T ss_pred HHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHC-----C--CHhhhhcCCHHHHH
Confidence 999998 799999999998764 7899999999999999988 3 67778888999999
Q ss_pred HHHhcCcCccHHHHHHHHHHhcCCCccccchHHHH-HHHHh-CCCCCCCCHHHHHHHHHhhCCcccHHHHHHHHHH
Q 023471 171 AELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFE-ISKAI-GWVPTAADRNKTYLHLNQRIPKELKFDLNCLLYT 244 (281)
Q Consensus 171 ~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~R-i~~rl-G~~~~~~~~~~~~~~l~~~~p~~~~~~~h~~lv~ 244 (281)
++|++|||||+|||++|++|++|.++||||+|+.| ++.++ |+.....++++++...+.+-|+..+..+|.|...
T Consensus 210 ~~L~~lpGIG~~TA~~ill~~lg~d~fpvdD~~~rr~~~~~~g~~~~~~~~~~~~~~~e~~~p~r~~a~~~Lw~~~ 285 (295)
T 2jhn_A 210 EYLTSFKGIGRWTAELVLSIALGKNVFPADDLGVRRAVSRLYFNGEIQSAEKVREIARERFGRFARDILFYLFLYD 285 (295)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCCCCCCTTCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHTGGGHHHHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHHHccCCCcccchHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 99999999999999999999999449999766554 88887 7743257888899999999999999888887643
No 20
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=97.22 E-value=0.003 Score=52.07 Aligned_cols=113 Identities=12% Similarity=0.172 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHhhhccHHHHHHHHHHHHhhC--CCHHHHHhCCHHHHHHHhhhCCC--chHHHHHHHHHHHHHH---H
Q 023471 79 EESVLDGLVKTVLSQNTTEANSLKAFASLKSTF--PTWEHVLAAEQKCIENAIRCGGL--APTKAACIKNILKCLL---E 151 (281)
Q Consensus 79 ~~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~~~--pt~~~la~~~~eel~~~i~~~G~--~~~KA~~I~~~a~~i~---~ 151 (281)
..-.||.|+-.++-.-.||..+.+-...+.++| -+++.|+..++++|++++..-|+ .+.|.+.+.+-|+.+. +
T Consensus 28 d~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~ 107 (183)
T 2ofk_A 28 SRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQ 107 (183)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 344699999999999999999999999999999 48999999999999999999998 4567778888888765 4
Q ss_pred HcCCCchHHHhcC----C-----------------hHHHHHHHh--cCcCccHHHHHHHHHHhcC
Q 023471 152 SKGKLCLEYLRGL----S-----------------IDEIKAELS--RFRGIGPKTVACVLMFHLQ 193 (281)
Q Consensus 152 ~~g~~~l~~l~~~----~-----------------~~~~~~~L~--~l~GIG~~tA~~il~~~~~ 193 (281)
++|+++ +.+.+. + .+.+-+.|. .++-|||-|+.++|+ |.|
T Consensus 108 e~Gsf~-~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkrGfkFvGpT~~yafmQ-A~G 170 (183)
T 2ofk_A 108 NGESFA-DFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQ-ACG 170 (183)
T ss_dssp TTCCHH-HHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHTTCCSCCHHHHHHHHH-HTT
T ss_pred hcCCHH-HHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhCCCeecChHHHHHHHH-HcC
Confidence 456542 122211 1 123556676 489999999988887 444
No 21
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=97.14 E-value=0.0091 Score=49.29 Aligned_cols=112 Identities=18% Similarity=0.211 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHhhhccHHHHHHHHHHHHhhC--CCHHHHHhCCHHHHHHHhhhCCC--chHHHHHHHHHHHHHH---HH
Q 023471 80 ESVLDGLVKTVLSQNTTEANSLKAFASLKSTF--PTWEHVLAAEQKCIENAIRCGGL--APTKAACIKNILKCLL---ES 152 (281)
Q Consensus 80 ~~~fe~Lv~~ILsqqts~~~a~~~~~~L~~~~--pt~~~la~~~~eel~~~i~~~G~--~~~KA~~I~~~a~~i~---~~ 152 (281)
.-.||.|+-.++-.-.||..+.+-...+.++| -+++.|+..++++|++++..-|+ .+.|.+.+.+-|+.+. ++
T Consensus 29 ~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e 108 (186)
T 2jg6_A 29 KALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQA 108 (186)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 44699999999999999999999999999999 48999999999999999999998 4567777888777765 45
Q ss_pred cCCCchHHHhcC----C-----------------hHHHHHHHh--cCcCccHHHHHHHHHHhcC
Q 023471 153 KGKLCLEYLRGL----S-----------------IDEIKAELS--RFRGIGPKTVACVLMFHLQ 193 (281)
Q Consensus 153 ~g~~~l~~l~~~----~-----------------~~~~~~~L~--~l~GIG~~tA~~il~~~~~ 193 (281)
+|+++ +.+.+. + .+.+-+.|. .++-|||.|+.++|+ |.|
T Consensus 109 ~gsf~-~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvGpt~~YafmQ-A~G 170 (186)
T 2jg6_A 109 YGSFS-KFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLE-AAG 170 (186)
T ss_dssp HSCHH-HHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCCHHHHHHHHH-HTT
T ss_pred cCCHH-HHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeechHHHHHHHH-Hhc
Confidence 66542 112110 1 124555676 489999999999888 444
No 22
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=94.31 E-value=0.09 Score=47.50 Aligned_cols=52 Identities=31% Similarity=0.381 Sum_probs=37.4
Q ss_pred CCchHHHHHHHHHHHHHHHHcCCC-chHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 133 GLAPTKAACIKNILKCLLESKGKL-CLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 133 G~~~~KA~~I~~~a~~i~~~~g~~-~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
|....-|+.|.++.+ . |.+ .++.+..-..+.....|++++|||++||..+-.
T Consensus 64 GIG~~~A~kI~E~l~---t--G~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~ 116 (335)
T 2fmp_A 64 GVGTKIAEKIDEFLA---T--GKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVD 116 (335)
T ss_dssp TCCHHHHHHHHHHHH---H--SSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH---h--CCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHH
Confidence 556667777766654 2 655 455665544478899999999999999997744
No 23
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=94.08 E-value=0.06 Score=49.16 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=38.4
Q ss_pred CCchHHHHHHHHHHHHHHHHcCCC-chHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 133 GLAPTKAACIKNILKCLLESKGKL-CLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 133 G~~~~KA~~I~~~a~~i~~~~g~~-~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
|.....|+.|.++.+ . |.+ .++.+..-..+.....|++++|||++||..+-.
T Consensus 68 GIG~~~A~kI~E~l~---t--G~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~ 120 (360)
T 2ihm_A 68 YFGEHSTRVIQELLE---H--GTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQ 120 (360)
T ss_dssp TCCHHHHHHHHHHHH---H--SCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---c--CChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHH
Confidence 566667777766655 2 665 456665546778889999999999999997744
No 24
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=92.30 E-value=0.14 Score=47.17 Aligned_cols=52 Identities=15% Similarity=0.101 Sum_probs=37.8
Q ss_pred CCchHHHHHHHHHHHHHHHHcCCC-chHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 133 GLAPTKAACIKNILKCLLESKGKL-CLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 133 G~~~~KA~~I~~~a~~i~~~~g~~-~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
|....-|+.|.++.+ . |.+ .++.+..-..+.....|++++|||++||..+-.
T Consensus 87 GIG~~ia~kI~E~l~---t--G~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~ 139 (381)
T 1jms_A 87 CLGDKVKSIIEGIIE---D--GESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFR 139 (381)
T ss_dssp SCCHHHHHHHHHHHH---H--SSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH---c--CCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHH
Confidence 666666666666554 2 655 466666546778889999999999999997743
No 25
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=92.21 E-value=0.28 Score=32.94 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=31.1
Q ss_pred HHHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHH-HHHHHHHH
Q 023471 103 AFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTK-AACIKNIL 146 (281)
Q Consensus 103 ~~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~K-A~~I~~~a 146 (281)
-...|..+|++.++|.+++.+||.++| | ... |+.|.+..
T Consensus 16 r~~~LL~~Fgs~~~i~~As~eeL~~vi---g--~~~~A~~I~~~l 55 (63)
T 2a1j_A 16 NCRSLMHHVKNIAELAALSQDELTSIL---G--NAANAKQLYDFI 55 (63)
T ss_dssp HHHHHHHHCSSHHHHHTCCHHHHHHHH---S--CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHCCHHHHHHHc---C--chHHHHHHHHHH
Confidence 356788999999999999999999983 3 345 88886654
No 26
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=91.97 E-value=0.13 Score=47.49 Aligned_cols=80 Identities=26% Similarity=0.257 Sum_probs=37.8
Q ss_pred HHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHH------------HHcCCC-------chHHHh---
Q 023471 105 ASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLL------------ESKGKL-------CLEYLR--- 162 (281)
Q Consensus 105 ~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~------------~~~g~~-------~l~~l~--- 162 (281)
..|+.+|++..++..++.++ ++.+||+..+...|+.+-+.+. ++||.+ ..+.|-
T Consensus 532 ~elkr~ygs~savr~~pv~e----lrelg~sd~~ia~ikgip~~~~~~~~~e~a~~l~er~~~~~~~~~~~~~~~l~~~g 607 (685)
T 4gfj_A 532 DELKRKYGSASAVRRLPVEE----LRELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLELG 607 (685)
T ss_dssp HHHHHHSSCHHHHHHSCHHH----HHTTSCCHHHHHHHHTCCHHHHHHSCHHHHHHHHHHHSSSTGGGGSCGGGCCSSSC
T ss_pred HHHHHhhccHHHHHhccHHH----HHHcCCchhhHHHhcCCcHHHHhhcCHHHHHHHHHHhccHHHHhhcCCHHHHhccC
Confidence 46888999999999999877 5569999999999887655544 445432 111111
Q ss_pred -------cCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 163 -------GLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 163 -------~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
... +...+.|+.++||||+.|+-++-
T Consensus 608 ~~~~~~~eik-~p~~k~ll~~~gv~p~la~r~~e 640 (685)
T 4gfj_A 608 ATPKAAAEIK-GPEFKFLLNIEGVGPKLAERILE 640 (685)
T ss_dssp CGGGC-----------------------------
T ss_pred CCHHHHHHhc-ChhHHHhhcccCCCHHHHHHHHH
Confidence 111 23467889999999999987654
No 27
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=91.92 E-value=0.51 Score=45.76 Aligned_cols=94 Identities=18% Similarity=0.149 Sum_probs=56.5
Q ss_pred HHHHHHHHhhC--CCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHH-------------------------HHHHHHHc
Q 023471 101 LKAFASLKSTF--PTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI-------------------------LKCLLESK 153 (281)
Q Consensus 101 ~~~~~~L~~~~--pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~-------------------------a~~i~~~~ 153 (281)
.+.+..|.+.. -++.+|..++.++|.. --||....|..|.+. |+.+.+.|
T Consensus 456 ~~~i~~L~~~g~i~~~~Dly~L~~~~L~~---l~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~La~~f 532 (586)
T 4glx_A 456 DKIIDQLVEKEYVHTPADLFKLTAGKLTG---LERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYF 532 (586)
T ss_dssp HHHHHHHHHTTCCSSGGGGGTCCHHHHHT---STTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHhCCCHHHHhc---ccCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHHHHHc
Confidence 34556666654 4677777777665443 235666555554432 33333334
Q ss_pred CCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 023471 154 GKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISKAI 210 (281)
Q Consensus 154 g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Ri~~rl 210 (281)
+ +++.|...+ .++|.+++|||+.+|..|..|- -|.+...++.+|
T Consensus 533 ~--sl~~l~~a~----~e~l~~i~giG~~~A~si~~ff-------~~~~n~~~i~~L 576 (586)
T 4glx_A 533 G--TLEALEAAS----IEELQKVPDVGIVVASHVHNFF-------AEESNRNVISEL 576 (586)
T ss_dssp C--SHHHHHHCC----HHHHTTSTTCCHHHHHHHHHHH-------HSHHHHHHHHHH
T ss_pred C--CHHHHHccC----HHHHhcCCCccHHHHHHHHHHH-------cCHHHHHHHHHH
Confidence 4 455555443 4579999999999999998853 245555555553
No 28
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=91.82 E-value=0.16 Score=42.70 Aligned_cols=30 Identities=37% Similarity=0.647 Sum_probs=24.1
Q ss_pred ChHHHHHHHhcCcCccHHHHHHHHHHhcCC
Q 023471 165 SIDEIKAELSRFRGIGPKTVACVLMFHLQQ 194 (281)
Q Consensus 165 ~~~~~~~~L~~l~GIG~~tA~~il~~~~~~ 194 (281)
..+++.+.|.+|||||+|||.-+..+-+..
T Consensus 20 ~l~~LI~~l~~LPGIG~KsA~RlA~hLL~~ 49 (212)
T 3vdp_A 20 SVAKLIEELSKLPGIGPKTAQRLAFFIINM 49 (212)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHcC
Confidence 367899999999999999998766654443
No 29
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=91.75 E-value=0.11 Score=43.75 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=14.4
Q ss_pred HHHHhcCcCccHHHHHHHHHH
Q 023471 170 KAELSRFRGIGPKTVACVLMF 190 (281)
Q Consensus 170 ~~~L~~l~GIG~~tA~~il~~ 190 (281)
.+.|.++||||+|||+-|..-
T Consensus 122 ~~~L~~vpGIG~KtA~rIi~e 142 (212)
T 2ztd_A 122 VAALTRVPGIGKRGAERMVLE 142 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHH
Confidence 356777777777777776653
No 30
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=91.45 E-value=0.29 Score=44.15 Aligned_cols=50 Identities=28% Similarity=0.364 Sum_probs=34.0
Q ss_pred CCchHHHHHHHHHHHHHHHHcCCC-chHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 133 GLAPTKAACIKNILKCLLESKGKL-CLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 133 G~~~~KA~~I~~~a~~i~~~~g~~-~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
|.....|+.|.++.+ .|.+ .++.+.. ..+ +.+.|.+++|||++||..+-.
T Consensus 64 GIG~~~A~kI~E~l~-----tG~~~~le~l~~-~~p-~l~ll~~v~GiG~k~a~~l~~ 114 (335)
T 2bcq_A 64 GIGKRMAEKIIEILE-----SGHLRKLDHISE-SVP-VLELFSNIWGAGTKTAQMWYQ 114 (335)
T ss_dssp TCCHHHHHHHHHHHH-----SSSCGGGGGCCT-THH-HHHHHHTSTTCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHH-----cCCchHHHHHhh-hhH-HHHHHhcCCCcCHHHHHHHHH
Confidence 666667777776544 2654 4455532 345 777778999999999997743
No 31
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=91.03 E-value=0.46 Score=32.41 Aligned_cols=38 Identities=32% Similarity=0.356 Sum_probs=25.2
Q ss_pred HHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHH
Q 023471 147 KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF 190 (281)
Q Consensus 147 ~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~ 190 (281)
+.+.+.||+ ++.+...+ .+.|.+++|||+++|..+..+
T Consensus 28 ~~Ll~~fgs--~~~l~~a~----~~~L~~i~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 28 RRLLKHFGS--VERVFTAS----VAELMKVEGIGEKIAKEIRRV 65 (75)
T ss_dssp HHHHHHHCS--HHHHHHCC----HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCC--HHHHHhCC----HHHHhcCCCCCHHHHHHHHHH
Confidence 333444554 45554333 467899999999999988764
No 32
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=90.52 E-value=0.24 Score=41.91 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=23.3
Q ss_pred hHHHHHHHhcCcCccHHHHHHHHHHhcCC
Q 023471 166 IDEIKAELSRFRGIGPKTVACVLMFHLQQ 194 (281)
Q Consensus 166 ~~~~~~~L~~l~GIG~~tA~~il~~~~~~ 194 (281)
.+++.+.|.+|||||+|||.-+..+-+..
T Consensus 7 l~~LI~~l~~LPGIG~KSA~RlA~hLL~~ 35 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRLAFHLFEQ 35 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHhHCCCCCHHHHHHHHHHHHcC
Confidence 47889999999999999998666544443
No 33
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=89.39 E-value=1 Score=41.73 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=51.4
Q ss_pred HHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHH------------HHHcCCCchHHHhcCChHHHHH
Q 023471 104 FASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCL------------LESKGKLCLEYLRGLSIDEIKA 171 (281)
Q Consensus 104 ~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i------------~~~~g~~~l~~l~~~~~~~~~~ 171 (281)
..+|.++|+|.+.+..|+++||.+ -|++..+++.|+.+-... ..+||+ ....+..+..++++
T Consensus 481 AeRLLEkFGSVe~Vm~AteDELRe----dGIGekqarrI~gl~~l~~~~~d~~~a~elkr~ygs--~savr~~pv~elre 554 (685)
T 4gfj_A 481 AERLLKKYGGYSKVREAGVEELRE----DGLTDAQIRELKGLKTLESIVGDLEKADELKRKYGS--ASAVRRLPVEELRE 554 (685)
T ss_dssp HHHHHHHHTSHHHHHHSCHHHHHH----TTCCHHHHHHHHTCHHHHHHSSSHHHHHHHHHHSSC--HHHHHHSCHHHHHT
T ss_pred HHHHHHHhcCHHHHHhCCHHHHHH----ccccHHHHHHHhhHHHHHHHhcchhhHHHHHHhhcc--HHHHHhccHHHHHH
Confidence 467889999999999999999744 789999999998754332 334553 33444455555543
Q ss_pred ------HHhcCcCccHHHH
Q 023471 172 ------ELSRFRGIGPKTV 184 (281)
Q Consensus 172 ------~L~~l~GIG~~tA 184 (281)
.+..|+||-.+.-
T Consensus 555 lg~sd~~ia~ikgip~~~~ 573 (685)
T 4gfj_A 555 LGFSDDEIAEIKGIPKKLR 573 (685)
T ss_dssp TSCCHHHHHHHHTCCHHHH
T ss_pred cCCchhhHHHhcCCcHHHH
Confidence 4556777766543
No 34
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=88.64 E-value=0.79 Score=32.87 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=25.5
Q ss_pred HHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHh
Q 023471 149 LLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 149 i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
+.+.||+ ++.+...+ .++|.+++|||+++|..+..+-
T Consensus 48 Ll~~fgs--~~~l~~as----~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 48 LLTTFGS--LEQLIAAS----REDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHSS--HHHHHSCC----HHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHHCCC--HHHHHhCC----HHHHHhCCCCCHHHHHHHHHHH
Confidence 3344553 45555444 3678999999999999887653
No 35
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=88.55 E-value=0.84 Score=32.50 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=26.2
Q ss_pred HHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHh
Q 023471 147 KCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 147 ~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
+.+.+.||+ ++.+...+ .++|.+++|||+++|..+..+-
T Consensus 33 ~~Ll~~fgs--l~~l~~a~----~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 33 QTLLTTFGS--LEQLIAAS----REDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHHHHHTCB--HHHHHHCC----HHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCC--HHHHHhCC----HHHHHhCCCCCHHHHHHHHHHH
Confidence 334445553 45554433 4678999999999999887654
No 36
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=88.17 E-value=0.71 Score=32.07 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=23.5
Q ss_pred HHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHH
Q 023471 151 ESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF 190 (281)
Q Consensus 151 ~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~ 190 (281)
+.||+ ++.+...+ .++|.+++|||+++|..+..+
T Consensus 42 ~~fgs--l~~l~~a~----~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 42 KYMGG--LQGLRNAS----VEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp HHHSC--HHHHHHCC----HHHHTTSSSTTSHHHHHHHHH
T ss_pred HHcCC--HHHHHHCC----HHHHHHCCCCCHHHHHHHHHH
Confidence 34553 45554333 467899999999999988764
No 37
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=88.13 E-value=0.14 Score=42.48 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=16.5
Q ss_pred HHHHhcCcCccHHHHHHHHHHh
Q 023471 170 KAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 170 ~~~L~~l~GIG~~tA~~il~~~ 191 (281)
.+.|.++||||++||.-|...-
T Consensus 106 ~~~L~~vpGIG~K~A~rI~~~l 127 (191)
T 1ixr_A 106 ARLLTSASGVGRRLAERIALEL 127 (191)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHH
Confidence 4678888888888888876533
No 38
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=87.96 E-value=0.75 Score=32.81 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=30.4
Q ss_pred HHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHH-HHHHHHHH
Q 023471 104 FASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTK-AACIKNIL 146 (281)
Q Consensus 104 ~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~K-A~~I~~~a 146 (281)
...|..+|++.++|..++.+||.++| | ... |+.|.++.
T Consensus 31 ~~~LL~~FgSl~~i~~AS~eEL~~vi---g--~~~~A~~I~~~l 69 (84)
T 1z00_B 31 CRSLMHHVKNIAELAALSQDELTSIL---G--NAANAKQLYDFI 69 (84)
T ss_dssp HHHHHHHSSCHHHHHHSCHHHHHHHH---S--CHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHCCHHHHHHHh---C--chHHHHHHHHHH
Confidence 56788999999999999999999983 3 234 78776654
No 39
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=87.76 E-value=1.9 Score=42.43 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=48.7
Q ss_pred HHHHHHhhC--CCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHH---------HHH----------------HHHHcCC
Q 023471 103 AFASLKSTF--PTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI---------LKC----------------LLESKGK 155 (281)
Q Consensus 103 ~~~~L~~~~--pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~---------a~~----------------i~~~~g~ 155 (281)
.+..|.+.. -++.+|..+..++|.. --||....+..|.+. .+. +.+.||
T Consensus 458 ~i~~L~~~g~I~~~aDL~~L~~~~L~~---l~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fg- 533 (671)
T 2owo_A 458 IIDQLVEKEYVHTPADLFKLTAGKLTG---LERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFG- 533 (671)
T ss_dssp HHHHHHHTTCCSSGGGGGTCCHHHHHT---STTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCCCHHHHHhhCHHHhhc---ccccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcC-
Confidence 344555553 3677777777665543 246666556655543 222 223333
Q ss_pred CchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHh
Q 023471 156 LCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 156 ~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
+++.+...+ .++|.+++|||+++|..|..|-
T Consensus 534 -sl~~l~~As----~eeL~~i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 534 -TLEALEAAS----IEELQKVPDVGIVVASHVHNFF 564 (671)
T ss_dssp -SHHHHHTCC----HHHHTTSTTCCHHHHHHHHHHH
T ss_pred -CHHHHHhCC----HHHHhhcCCCCHHHHHHHHHHH
Confidence 345555443 4689999999999999998753
No 40
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=87.29 E-value=1 Score=40.54 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=39.7
Q ss_pred HHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHh
Q 023471 124 CIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 124 el~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
++.+++...|-...|++...++|..|.. +. .++. ....|.+|||||+.+|+.|.-+.
T Consensus 21 ~ia~l~e~~~~~~~rv~AYr~Aa~~l~~-l~-~~i~---------~~~~l~~LpGIG~~~A~kI~E~l 77 (335)
T 2fmp_A 21 ELANFEKNVSQAIHKYNAYRKAASVIAK-YP-HKIK---------SGAEAKKLPGVGTKIAEKIDEFL 77 (335)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH-CS-SCCC---------CHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHh-CC-cccc---------CHHHHhcCCCCcHHHHHHHHHHH
Confidence 4455555455555688999999999876 22 2222 12348999999999999998663
No 41
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=86.42 E-value=0.75 Score=41.98 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=39.8
Q ss_pred HHHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHH
Q 023471 103 AFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLE 151 (281)
Q Consensus 103 ~~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~ 151 (281)
..++|.++|++.+.|.+++.+||.+ --|.+..||+.|++....+..
T Consensus 327 iae~Lv~~FGsLq~Il~AS~eEL~~---VeGIGe~rAr~IregL~r~~~ 372 (377)
T 3c1y_A 327 IGYNVVRMFKTLDQISKASVEDLKK---VEGIGEKRARAISESISSLKH 372 (377)
T ss_dssp HHHHHHHHHCSHHHHTTCCHHHHTT---STTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhCCHHHHHh---ccCccHHHHHHHHHHHHHHhc
Confidence 4678999999999999999988765 358888999999999988864
No 42
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=86.13 E-value=0.44 Score=32.88 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=18.9
Q ss_pred HHHHHhcCcCccHHHHHHHHHH
Q 023471 169 IKAELSRFRGIGPKTVACVLMF 190 (281)
Q Consensus 169 ~~~~L~~l~GIG~~tA~~il~~ 190 (281)
....|.++||||+++|..|+.+
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHT
T ss_pred CHHHHHhCCCCCHHHHHHHHHH
Confidence 3567999999999999999875
No 43
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=86.07 E-value=1.3 Score=40.27 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=38.7
Q ss_pred HHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHh
Q 023471 124 CIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 124 el~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
++.+++.--| ...|++...++|..|.. +. .++..+ +.|.+|||||+.+|+.|.-+.
T Consensus 26 ~ia~~~e~~g-~~~r~~AYr~Aa~~l~~-l~-~~i~~~---------~~l~~lpGIG~~~A~kI~E~l 81 (360)
T 2ihm_A 26 TLAEAAGFEA-NEGRLLSFSRAASVLKS-LP-CPVASL---------SQLHGLPYFGEHSTRVIQELL 81 (360)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHH-CS-SCCCSG---------GGGTTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CcHHHHHHHHHHHHHHh-CC-cccCCH---------HHHhcCCCCCHHHHHHHHHHH
Confidence 3344444556 55688888999998876 22 233222 238999999999999987663
No 44
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=85.38 E-value=2 Score=36.02 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=11.6
Q ss_pred HHHHhhhCCCchHHHHHHH
Q 023471 125 IENAIRCGGLAPTKAACIK 143 (281)
Q Consensus 125 l~~~i~~~G~~~~KA~~I~ 143 (281)
...+.+--|....+|++|.
T Consensus 122 ~~~L~~vpGIG~KtA~rIi 140 (212)
T 2ztd_A 122 VAALTRVPGIGKRGAERMV 140 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHH
Confidence 3444455677777776663
No 45
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=84.58 E-value=1.4 Score=40.36 Aligned_cols=53 Identities=6% Similarity=-0.035 Sum_probs=36.8
Q ss_pred HHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHh
Q 023471 127 NAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 127 ~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
+++.-.| ...|++...++|..|.. +. .++..+ +.|.+|||||+.+|+.|.-+.
T Consensus 48 ~~~e~~g-~~~rv~AYr~Aa~~l~~-l~-~~i~~~---------~~l~~lpGIG~~ia~kI~E~l 100 (381)
T 1jms_A 48 ENDELRE-NEGSCLAFMRASSVLKS-LP-FPITSM---------KDTEGIPCLGDKVKSIIEGII 100 (381)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHT-CS-SCCCSG---------GGGTTCSSCCHHHHHHHHHHH
T ss_pred HHHHhhC-CcHHHHHHHHHHHHHHh-CC-ccccCH---------HHHhcCCCCcHHHHHHHHHHH
Confidence 3344456 55688888999998875 22 233222 238999999999999987653
No 46
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=83.98 E-value=0.97 Score=32.19 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=21.5
Q ss_pred HHHHHHHhcCcCccHHHHHHHHHHhcC
Q 023471 167 DEIKAELSRFRGIGPKTVACVLMFHLQ 193 (281)
Q Consensus 167 ~~~~~~L~~l~GIG~~tA~~il~~~~~ 193 (281)
......|..|||||++....+|. .||
T Consensus 14 ~~~~s~L~~IpGIG~kr~~~LL~-~Fg 39 (84)
T 1z00_B 14 PGPQDFLLKMPGVNAKNCRSLMH-HVK 39 (84)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHH-HSS
T ss_pred ccHHHHHHhCCCCCHHHHHHHHH-HcC
Confidence 56788999999999999988776 444
No 47
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=83.65 E-value=1.4 Score=39.55 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=38.5
Q ss_pred HHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHh
Q 023471 124 CIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 124 el~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
++.+++.-.|-. .|++...++|..|.. +. .++. . .++|.+|||||+.+|+.|.-+.
T Consensus 22 ~ia~~~e~~g~~-~r~~AYr~Aa~~l~~-l~-~~i~--------~-~~~l~~lpGIG~~~A~kI~E~l 77 (335)
T 2bcq_A 22 VLAKAYSVQGDK-WRALGYAKAINALKS-FH-KPVT--------S-YQEACSIPGIGKRMAEKIIEIL 77 (335)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHHHHHS-CC-SCCC--------C-HHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcc-HhHHHHHHHHHHHHh-CC-cccc--------C-HHHHhcCCCccHHHHHHHHHHH
Confidence 444445555655 688888898988875 22 2222 1 2349999999999999998663
No 48
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=83.07 E-value=3 Score=34.32 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=20.9
Q ss_pred HHHhhCCC---HHHHHhCCHHHHHHHhhhCCCchHHHHHHHH
Q 023471 106 SLKSTFPT---WEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144 (281)
Q Consensus 106 ~L~~~~pt---~~~la~~~~eel~~~i~~~G~~~~KA~~I~~ 144 (281)
.+...|++ .++|...+ ++++-+--|.+..+|++|..
T Consensus 87 ~iL~~f~~~~l~~aI~~~d---~~~L~~vpGIG~K~A~rI~~ 125 (191)
T 1ixr_A 87 ALLSALPPRLLARALLEGD---ARLLTSASGVGRRLAERIAL 125 (191)
T ss_dssp HHHHHSCHHHHHHHHHTTC---HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHhCChHHHHHHHHhCC---HHHHHhCCCCCHHHHHHHHH
Confidence 45556655 44455444 44444445888877777743
No 49
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=82.96 E-value=2.4 Score=41.66 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=49.6
Q ss_pred HHHHHHHhhCC--CHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHH-------------------------HHHHHHHcC
Q 023471 102 KAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI-------------------------LKCLLESKG 154 (281)
Q Consensus 102 ~~~~~L~~~~p--t~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~-------------------------a~~i~~~~g 154 (281)
+.+..|.+.+. ++.+|..+..++|.++ -||...++..|.+. |+.+.+.||
T Consensus 452 k~i~~L~~~g~I~~~~DL~~L~~e~L~~l---~g~G~Ksa~nLl~aIe~sk~~~l~R~L~alGI~~VG~~~Ak~La~~Fg 528 (667)
T 1dgs_A 452 KLIERLLEKGLVRDVADLYHLRKEDLLGL---ERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFG 528 (667)
T ss_dssp HHHHHHHHTTSCSSGGGGGGGCCHHHHTT---SSCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCHHHHHhcCHHHHhcc---cccchhhHHHHHHHHHHHhcCcHHHhhHhhccCCccHHHHHHHHHHcC
Confidence 34455666653 7777777776655442 36665555555443 222233333
Q ss_pred CCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHh
Q 023471 155 KLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 155 ~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
+++.+...+ .++|.+++|||+++|+.|..|-
T Consensus 529 --sl~~l~~As----~eeL~~I~GIG~~~A~sI~~ff 559 (667)
T 1dgs_A 529 --TMDRLLEAS----LEELIEVEEVGELTARAILETL 559 (667)
T ss_dssp --BHHHHTTCC----HHHHHTSTTCCHHHHHHHHHHH
T ss_pred --CHHHHHhCC----HHHHHhccCcCHHHHHHHHHHH
Confidence 355554443 4678899999999999998754
No 50
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=82.86 E-value=0.87 Score=30.47 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=18.9
Q ss_pred HHHHhcCcCccHHHHHHHHHHhcCC
Q 023471 170 KAELSRFRGIGPKTVACVLMFHLQQ 194 (281)
Q Consensus 170 ~~~L~~l~GIG~~tA~~il~~~~~~ 194 (281)
...|.+|||||++.+..+|. .||-
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~-~Fgs 26 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMH-HVKN 26 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHH-HCSS
T ss_pred HhHHHcCCCCCHHHHHHHHH-HcCC
Confidence 35688999999999987776 4543
No 51
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=82.78 E-value=2.6 Score=28.83 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=36.1
Q ss_pred HHHHHHhh-CCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHH
Q 023471 103 AFASLKST-FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKC 148 (281)
Q Consensus 103 ~~~~L~~~-~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~ 148 (281)
...+|.+. +-|.++|+.++.++|.++ .|++..||..|+..|+.
T Consensus 19 ~~~kL~e~Gi~TvedlA~~~~~eL~~i---~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 19 LAFKLAARGVCTLEDLAEQGIDDLADI---EGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHHHTTTCCSHHHHHTSCHHHHHTS---SSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHcCCHHHHHHc---cCCCHHHHHHHHHHHHH
Confidence 34567766 479999999999998874 49999999999999987
No 52
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=81.65 E-value=4.4 Score=35.22 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=18.9
Q ss_pred HHHHhcCcCccHHHHHHHHHHhcCCC
Q 023471 170 KAELSRFRGIGPKTVACVLMFHLQQD 195 (281)
Q Consensus 170 ~~~L~~l~GIG~~tA~~il~~~~~~~ 195 (281)
..+|.+-.|||.+||+-+| .+||.|
T Consensus 410 laeltkkegvgrktaerll-rafgnp 434 (519)
T 2csb_A 410 LAELTKKEGVGRKTAERLL-RAFGNP 434 (519)
T ss_dssp HHHHHTSTTCCHHHHHHHH-HHHSSH
T ss_pred HHHHhhhcccchhHHHHHH-HHhCCH
Confidence 4567888999999998655 477763
No 53
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=81.34 E-value=0.47 Score=32.71 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=34.6
Q ss_pred HHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 114 ~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
+-+|..++.++|.. | -|++..+|+.|.+.- .+ ...++|.+++|||+++++-+.-
T Consensus 18 ~idiN~a~~~~L~~-i--pGIG~~~A~~Il~~r--------~~-----------~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 18 PVSLNEASLEELMA-L--PGIGPVLARRIVEGR--------PY-----------ARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp SEETTTCCHHHHTT-S--TTCCHHHHHHHHHTC--------CC-----------SSGGGGGGSTTCCHHHHHHHGG
T ss_pred ccChhhCCHHHHHh-C--CCCCHHHHHHHHHHc--------cc-----------CCHHHHHhCCCCCHHHHHHHHH
Confidence 34456667666554 2 467776666665521 11 1245688999999999987754
No 54
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=81.08 E-value=0.72 Score=35.82 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=36.0
Q ss_pred HHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 116 HVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 116 ~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
+|-.++.++|.. --|++..||+.|. .+|.|. ..++|.+++|||+++.+.+--
T Consensus 56 niNtA~~~eL~~---LpGiGp~~A~~II--------~~GpF~-----------svedL~~V~GIg~k~~e~l~~ 107 (134)
T 1s5l_U 56 DLNNTNIAAFIQ---YRGLYPTLAKLIV--------KNAPYE-----------SVEDVLNIPGLTERQKQILRE 107 (134)
T ss_dssp ETTTSCGGGGGG---STTCTHHHHHHHH--------HTCCCS-----------SGGGGGGCTTCCHHHHHHHHH
T ss_pred eCcccCHHHHHH---CCCCCHHHHHHHH--------HcCCCC-----------CHHHHHhCCCCCHHHHHHHHH
Confidence 455566655443 3588888998887 257652 356789999999998776643
No 55
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=79.57 E-value=2.9 Score=34.77 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.4
Q ss_pred HHHHhcCcCccHHHHHHHHHH
Q 023471 170 KAELSRFRGIGPKTVACVLMF 190 (281)
Q Consensus 170 ~~~L~~l~GIG~~tA~~il~~ 190 (281)
.+.|.++||||++||.-|...
T Consensus 107 ~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 107 VGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHH
Confidence 578999999999999998753
No 56
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=77.32 E-value=3.7 Score=34.14 Aligned_cols=36 Identities=39% Similarity=0.491 Sum_probs=23.0
Q ss_pred HHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHH
Q 023471 149 LLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF 190 (281)
Q Consensus 149 i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~ 190 (281)
+.+.||. ++.+...+ .++|.+++|||+++|..+..+
T Consensus 178 Ll~~fgs--~~~l~~a~----~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 178 ILERFGS--LERFFTAS----KAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp HHHHHSS--HHHHTTCC----HHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHcCC--HHHHHhCC----HHHHhhCCCCCHHHHHHHHHH
Confidence 3444554 45554444 346788888888888887654
No 57
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=77.01 E-value=1.3 Score=32.40 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=36.2
Q ss_pred CHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 113 TWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 113 t~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
..-+|-.++.++|.. | -|++..+|+.|.+ +|.| ...++|.+++|||+++.+-+.-
T Consensus 16 ~~vdiNtAs~~eL~~-l--pGIG~~~A~~IV~--------~GpF-----------~s~edL~~V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 16 EKIDLNNTNIAAFIQ-Y--RGLYPTLAKLIVK--------NAPY-----------ESVEDVLNIPGLTERQKQILRE 70 (97)
T ss_dssp TSEETTTSCGGGGGG-S--TTCTTHHHHHHHH--------HCCC-----------SSGGGGGGCTTCCHHHHHHHHH
T ss_pred CceeCCcCCHHHHhH-C--CCCCHHHHHHHHH--------cCCC-----------CCHHHHHhccCCCHHHHHHHHH
Confidence 334455667665544 2 4666667777766 3665 1356788999999999887754
No 58
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=76.82 E-value=1.7 Score=36.22 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=21.2
Q ss_pred HHHHHHHhcCcCccHHHHHHHHHHhcCC
Q 023471 167 DEIKAELSRFRGIGPKTVACVLMFHLQQ 194 (281)
Q Consensus 167 ~~~~~~L~~l~GIG~~tA~~il~~~~~~ 194 (281)
.+....|.+++||||++|-.+|. .|+-
T Consensus 69 k~~f~~L~~V~GIGpk~A~~iL~-~f~~ 95 (203)
T 1cuk_A 69 RTLFKELIKTNGVGPKLALAILS-GMSA 95 (203)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHH-HSCH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHh-hCCh
Confidence 34556789999999999999887 4544
No 59
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=76.31 E-value=5.7 Score=28.65 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=36.5
Q ss_pred HHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHH
Q 023471 115 EHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF 190 (281)
Q Consensus 115 ~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~ 190 (281)
-+|..++.++|.. |. |+....|+.|.+.-. ..|.+ ...++|.+++|||+++++.+...
T Consensus 32 i~iN~a~~~~L~~-ip--GIG~~~A~~Il~~r~----~~g~f-----------~s~edL~~v~Gig~k~~~~l~~~ 89 (98)
T 2edu_A 32 DLLNEGSARDLRS-LQ--RIGPKKAQLIVGWRE----LHGPF-----------SQVEDLERVEGITGKQMESFLKA 89 (98)
T ss_dssp HHHHHSCHHHHHH-ST--TCCHHHHHHHHHHHH----HHCCC-----------SSGGGGGGSTTCCHHHHHHHHHH
T ss_pred eehhhCCHHHHHH-CC--CCCHHHHHHHHHHHH----hcCCc-----------CCHHHHHhCCCCCHHHHHHHHHC
Confidence 4566677776654 43 556666776665422 12443 11334899999999999988653
No 60
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=76.19 E-value=1.8 Score=31.48 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=18.6
Q ss_pred HHHHhcCcCccHHHHHHHHHH
Q 023471 170 KAELSRFRGIGPKTVACVLMF 190 (281)
Q Consensus 170 ~~~L~~l~GIG~~tA~~il~~ 190 (281)
.+.|.+|||||+.+|..|+.+
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~ 59 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGW 59 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHH
Confidence 457899999999999999876
No 61
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=76.06 E-value=7.2 Score=37.47 Aligned_cols=51 Identities=29% Similarity=0.375 Sum_probs=31.4
Q ss_pred CCchHHHHHHHHHHHHHHHHcCCCc-hHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 133 GLAPTKAACIKNILKCLLESKGKLC-LEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 133 G~~~~KA~~I~~~a~~i~~~~g~~~-l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
|....-+.+|..+. .+ |.+. ++.+.. +..+....|++++||||++|-.++.
T Consensus 60 ~iG~~~~~~i~~~v---~~--g~~~l~~~~~~-~~~~~~~~l~~v~GvGpk~A~~~~~ 111 (575)
T 3b0x_A 60 GVGPDLAEKILEFL---RT--GKVRKHEELSR-KVPRGVLEVMEVPGVGPKTARLLYE 111 (575)
T ss_dssp TCCHHHHHHHHHHH---HH--SSCHHHHHHHH-HSCHHHHHHHTSTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---Hc--CcHHHHhhhhh-hhHHHHHHHhcCCCcCHHHHHHHHH
Confidence 44444444554433 23 5443 233332 2345788899999999999988876
No 62
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=75.07 E-value=6.3 Score=27.73 Aligned_cols=40 Identities=33% Similarity=0.538 Sum_probs=30.6
Q ss_pred HHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHH
Q 023471 104 FASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146 (281)
Q Consensus 104 ~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a 146 (281)
..+|.+.|++.++|..++.++|.. --|++..+|..|....
T Consensus 32 A~~Ll~~fgsl~~l~~a~~~eL~~---i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 32 SQTLLTTFGSLEQLIAASREDLAL---CPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHHHHHHTCBHHHHHHCCHHHHHT---STTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHhCCHHHHHh---CCCCCHHHHHHHHHHH
Confidence 456778899999999999987654 3477777888876644
No 63
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=74.24 E-value=1.5 Score=36.44 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=24.5
Q ss_pred HHHHHhcCcCccHHHHHHHHHHhcCCCccccchH
Q 023471 169 IKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTH 202 (281)
Q Consensus 169 ~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~ 202 (281)
..++|..|||||+++|..|+.+--..+.-.+|+.
T Consensus 130 ~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL 163 (205)
T 2i5h_A 130 RMHQLELLPGVGKKMMWAIIEERKKRPFESFEDI 163 (205)
T ss_dssp SSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHH
T ss_pred CHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHH
Confidence 4567899999999999999976433344445553
No 64
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=73.90 E-value=1.3 Score=34.41 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=17.9
Q ss_pred HHHHhcCcCccHHHHHHHHH
Q 023471 170 KAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 170 ~~~L~~l~GIG~~tA~~il~ 189 (281)
.++|.++|||||+.|..|..
T Consensus 62 ~~eL~~LpGiGp~~A~~II~ 81 (134)
T 1s5l_U 62 IAAFIQYRGLYPTLAKLIVK 81 (134)
T ss_dssp GGGGGGSTTCTHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHH
Confidence 56789999999999999994
No 65
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=73.04 E-value=1.2 Score=32.58 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=18.2
Q ss_pred HHHHhcCcCccHHHHHHHHH
Q 023471 170 KAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 170 ~~~L~~l~GIG~~tA~~il~ 189 (281)
.++|..|||||+..|..|..
T Consensus 25 ~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 25 IAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp GGGGGGSTTCTTHHHHHHHH
T ss_pred HHHHhHCCCCCHHHHHHHHH
Confidence 46789999999999999988
No 66
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=71.44 E-value=5.8 Score=28.13 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHH-hhhccHHHHHHHHHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHH
Q 023471 80 ESVLDGLVKTVL-SQNTTEANSLKAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146 (281)
Q Consensus 80 ~~~fe~Lv~~IL-sqqts~~~a~~~~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a 146 (281)
.+.++.++..+. ........ ..+|.+.|+++++|..++.++|.+ --|+...+|..|....
T Consensus 24 ~~~~~~~~~~L~~IpgIG~~~----A~~Ll~~fgs~~~l~~as~~eL~~---i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 24 QDFVSRVTECLTTVKSVNKTD----SQTLLTTFGSLEQLIAASREDLAL---CPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHHHHHHHTTSTTCCHHH----HHHHHHHHSSHHHHHSCCHHHHHT---SSSCCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCHHH----HHHHHHHCCCHHHHHhCCHHHHHh---CCCCCHHHHHHHHHHH
Confidence 344555555542 23333333 446677889999999999987654 2466677888776543
No 67
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=71.03 E-value=3.7 Score=28.25 Aligned_cols=39 Identities=15% Similarity=-0.018 Sum_probs=28.8
Q ss_pred HHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHH
Q 023471 104 FASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145 (281)
Q Consensus 104 ~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~ 145 (281)
..+|.+.|+++++|..++.++|.+ --|+...+|..|...
T Consensus 37 A~~Ll~~fgsl~~l~~a~~eeL~~---i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 37 RQMLLKYMGGLQGLRNASVEEIAK---VPGISQGLAEKIFWS 75 (78)
T ss_dssp HHHHHHHHSCHHHHHHCCHHHHTT---SSSTTSHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHCCHHHHHH---CCCCCHHHHHHHHHH
Confidence 345667788999999999887654 246777788877654
No 68
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=70.89 E-value=2.8 Score=40.46 Aligned_cols=78 Identities=13% Similarity=0.047 Sum_probs=42.8
Q ss_pred HHHHHHHhcCcCccHHHHHHHHHHhcCCCccccchHHHHHHH-HhCCCC--CCCCHHHH------HHHHHhhCCcccHHH
Q 023471 167 DEIKAELSRFRGIGPKTVACVLMFHLQQDDFPVDTHVFEISK-AIGWVP--TAADRNKT------YLHLNQRIPKELKFD 237 (281)
Q Consensus 167 ~~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~Ri~~-rlG~~~--~~~~~~~~------~~~l~~~~p~~~~~~ 237 (281)
.+....|++++||||++|..++.- | +..+|+-...+.. +|--++ ...+.+++ ...+...+|......
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~--G--~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~~~~~~~~r~~~~e~~~ 168 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA--G--IDSLERLREAAESGELAGLKGFGAKSAATILENVVFLFEARQRQSLRAGLA 168 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT--T--CCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHHHHHHHCSSEEHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc--C--CCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHHHHHhhcCCeeHHHHHH
Confidence 457788999999999999988863 3 3334444432211 221111 11222333 122334555555666
Q ss_pred HHHHHHHhccc
Q 023471 238 LNCLLYTHGKL 248 (281)
Q Consensus 238 ~h~~lv~~G~~ 248 (281)
+...+.++-+.
T Consensus 169 ~~~~i~~~l~~ 179 (578)
T 2w9m_A 169 VAEELAGALTD 179 (578)
T ss_dssp HHHHHHHHTGG
T ss_pred HHHHHHHHHHh
Confidence 66667666655
No 69
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=70.36 E-value=6.6 Score=26.30 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=30.3
Q ss_pred HHHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHH
Q 023471 103 AFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146 (281)
Q Consensus 103 ~~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a 146 (281)
...+|.+.|++.+.|..++.++|.. --|+...+|..|....
T Consensus 26 ~a~~Ll~~fgs~~~l~~a~~~~L~~---i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 26 LARRLLKHFGSVERVFTASVAELMK---VEGIGEKIAKEIRRVI 66 (75)
T ss_dssp HHHHHHHHHCSHHHHHHCCHHHHTT---STTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHhCCHHHHhc---CCCCCHHHHHHHHHHH
Confidence 3556777889999999999877543 3577788888776543
No 70
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=68.33 E-value=2.9 Score=29.91 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHH
Q 023471 138 KAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188 (281)
Q Consensus 138 KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il 188 (281)
++.....++..+.. |.. ++ ...+++..|+|||++++..+-
T Consensus 36 ~~~~Y~KA~~sLk~-~P~---------~i-~s~~e~~~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 36 TRFVFQKALRSLQR-YPL---------PL-RSGKEAKILQHFGDRLCRMLD 75 (87)
T ss_dssp THHHHHHHHHHHHH-CCS---------CC-CSHHHHHTCTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCC---------CC-CCHHHHHHhhcccHHHHHHHH
Confidence 45556666666665 332 11 134678899999999998764
No 71
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=67.92 E-value=7.2 Score=37.52 Aligned_cols=55 Identities=27% Similarity=0.394 Sum_probs=38.0
Q ss_pred HHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHH
Q 023471 122 QKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACV 187 (281)
Q Consensus 122 ~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~i 187 (281)
.+.+.++++--|....+|+.|.+ . |-.++++|... -....|.++||||+||+.-|
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~-------~-G~~s~edL~~a---~~~~~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWL-------A-GIDSLERLREA---AESGELAGLKGFGAKSAATI 147 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHH-------T-TCCSHHHHHHH---HHHTTTTTSTTCCHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHH-------c-CCCCHHHHHHH---HhhCccccCCCCCHHHHHHH
Confidence 45677778888999888877753 1 43466655421 01236888999999999988
No 72
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.27 E-value=3.5 Score=29.18 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=32.6
Q ss_pred HHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHH
Q 023471 114 WEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDE 168 (281)
Q Consensus 114 ~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~ 168 (281)
|.+|...+++||.+.|+-+|+.. .++..+.+ ..+|-+-|-.++.+.
T Consensus 12 P~dLs~lSv~EVs~~Lr~igL~e-------~vv~~F~~--e~IDG~lL~~L~ee~ 57 (84)
T 2dkz_A 12 PADLSGLSIEEVSKSLRFIGLSE-------DVISFFVT--EKIDGNLLVQLTEEI 57 (84)
T ss_dssp CSCCSSCCHHHHHHHGGGTCCCH-------HHHHHHHT--TTCCHHHHHHCCHHH
T ss_pred chhhhhcCHHHHHHHHHHcCCcH-------HHHHHHHH--HccchHHHHhCCHHH
Confidence 67788899999999999999996 23344443 456666666665443
No 73
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=63.48 E-value=1.5 Score=37.61 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHhcCcCccHHHHHHHHHHhcC
Q 023471 170 KAELSRFRGIGPKTVACVLMFHLQ 193 (281)
Q Consensus 170 ~~~L~~l~GIG~~tA~~il~~~~~ 193 (281)
...|.+|+|||+++|..++...|+
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~gf~ 37 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREAGFE 37 (241)
T ss_dssp ------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHcCCC
Confidence 345666777777777666655343
No 74
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=62.41 E-value=22 Score=24.10 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=35.9
Q ss_pred HHHHHhh-CCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHH
Q 023471 104 FASLKST-FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLE 151 (281)
Q Consensus 104 ~~~L~~~-~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~ 151 (281)
...|.+. |-|.++|+.++.++|.+ --||...|+.-|++-|+.+..
T Consensus 19 a~~L~~~Gf~tve~vA~~~~~eL~~---I~G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 19 ATVLVEEGFSTLEELAYVPMKELLE---IEGLDEPTVEALRERAKNALA 64 (70)
T ss_dssp HHHHHHTTCCCHHHHHHSCHHHHTT---STTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcCcHHHHHcCCHHHHhh---ccCCCHHHHHHHHHHHHHHHH
Confidence 3455554 67999999999987655 468999999999999987765
No 75
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=61.32 E-value=20 Score=24.20 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=29.4
Q ss_pred HHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHh
Q 023471 146 LKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 146 a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
+..+.+ .|-.+++.+...+ .++|..++||+...|+.+.+-|
T Consensus 20 ~~kL~e-~Gi~TvedlA~~~----~~eL~~i~gise~kA~~ii~aA 60 (70)
T 1wcn_A 20 AFKLAA-RGVCTLEDLAEQG----IDDLADIEGLTDEKAGALIMAA 60 (70)
T ss_dssp HHHHHT-TTCCSHHHHHTSC----HHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCcHHHHHcCC----HHHHHHccCCCHHHHHHHHHHH
Confidence 334444 3444888887665 4668889999999999988755
No 76
>1xqo_A 8-oxoguanine DNA glycosylase; helix-hairpin-helix, archaea, P.aerophilum, PA-AGOG native, DNA repair, lyase; 1.03A {Pyrobaculum aerophilum} SCOP: a.96.1.6 PDB: 1xqp_A*
Probab=60.17 E-value=29 Score=29.70 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=73.3
Q ss_pred HHHHhhhccHHHHHHHHHHHHhhCC--CHHHHHhCCHHHHHHHhhhCCC----chHHHHHHHHHHHHHHHHcCCCchHHH
Q 023471 88 KTVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGGL----APTKAACIKNILKCLLESKGKLCLEYL 161 (281)
Q Consensus 88 ~~ILsqqts~~~a~~~~~~L~~~~p--t~~~la~~~~eel~~~i~~~G~----~~~KA~~I~~~a~~i~~~~g~~~l~~l 161 (281)
.++.|-|.+...-. .|..|.+-|. ++.+| .+++...++...+ .++|.++|..+..... +++
T Consensus 54 NaLvSYQLsgkGEe-~W~~Fs~yfs~~~~~~l----~~~~~~Fl~~s~~n~Rl~~~KikRi~k~~~~~~------~~~-- 120 (256)
T 1xqo_A 54 NALISYRLTGKGEE-HWEYFGKYFSQLEVIDL----CRDFLKYIETSPFLKIGVEARKKRALKACDYVP------NLE-- 120 (256)
T ss_dssp HHHTCCCCTTCHHH-HHHHHHHHHHTSCCSSH----HHHHHHHHHHCTTCCTTHHHHHHHHHHHTTCCC------CTT--
T ss_pred HHHHHHhcCCchHH-HHHHHHHHHhcCChhhH----HHHHHHHHhcCchhHHHHHHHHHHHHHHhhhhh------HHH--
Confidence 36667776654333 5655555441 22222 3456667776643 4688888887643332 222
Q ss_pred hcCChHHHHHHHhcCcCccH---------HHHHHHHHHhcCCC-------ccccchHHHHHHHHhCCCCCCC-----CHH
Q 023471 162 RGLSIDEIKAELSRFRGIGP---------KTVACVLMFHLQQD-------DFPVDTHVFEISKAIGWVPTAA-----DRN 220 (281)
Q Consensus 162 ~~~~~~~~~~~L~~l~GIG~---------~tA~~il~~~~~~~-------~~~vD~~v~Ri~~rlG~~~~~~-----~~~ 220 (281)
+...+++.|..+-|-.+ |...+....++|.. -+|||.-+..+....|+++... .++
T Consensus 121 ---dl~~l~~~LA~~l~s~~~~KTIVFAvKM~~Ya~r~~~g~~~~~p~~IpIPvD~Rv~~lT~~s~l~~~~~~~~mr~~~ 197 (256)
T 1xqo_A 121 ---DLGLTLRQLSHIVGARREQKTLVFTIKILNYAYMCSRGVNRVLPFDIPIPVDYRVARLTWCAGLIDFPPEEALRRYE 197 (256)
T ss_dssp ---CHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHTCCCCCCTTSCCCCCHHHHHHHHHTTSCSSCHHHHHHTHH
T ss_pred ---HHHHHHHHHHHHhCCCCCcceeeeHHHHHHHHHHHHcCCCCCCCCCCCCCchHHHHHHHHHhccccCChhhhhhhhH
Confidence 45677777777766552 33444445555642 4899999999999999976321 234
Q ss_pred HHHHHHHh
Q 023471 221 KTYLHLNQ 228 (281)
Q Consensus 221 ~~~~~l~~ 228 (281)
+++..+..
T Consensus 198 ~~~~~W~~ 205 (256)
T 1xqo_A 198 AVQKIWDA 205 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56655543
No 77
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=59.58 E-value=12 Score=34.09 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHH
Q 023471 145 ILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188 (281)
Q Consensus 145 ~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il 188 (281)
+++.++++||+ ++.+-..+ .++|.++.|||++.|..|.
T Consensus 327 iae~Lv~~FGs--Lq~Il~AS----~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 327 IGYNVVRMFKT--LDQISKAS----VEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp HHHHHHHHHCS--HHHHTTCC----HHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHhCC--HHHHHhCC----HHHHHhccCccHHHHHHHH
Confidence 57778888875 56665444 4678999999999998764
No 78
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=58.87 E-value=10 Score=31.87 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=25.8
Q ss_pred HHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHH
Q 023471 105 ASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKN 144 (281)
Q Consensus 105 ~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~ 144 (281)
..|.++|++++.|.+++.+||.++ +|-. ..|+.|.+
T Consensus 182 k~Ll~~FgSl~~i~~As~EeL~~V---IG~~-~~A~~I~~ 217 (220)
T 2nrt_A 182 KKLIEHFGSLENIRSASLEEIARV---IGST-EIARRVLD 217 (220)
T ss_dssp HHHHHHHCSHHHHHTSCHHHHHHH---HTCH-HHHHHHHH
T ss_pred HHHHHHcCCHHHHHhCCHHHHHHH---hChH-HHHHHHHH
Confidence 346667999999999999999887 3321 45665554
No 79
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=58.42 E-value=11 Score=37.83 Aligned_cols=75 Identities=25% Similarity=0.295 Sum_probs=48.1
Q ss_pred CCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHhcCC-Cccc
Q 023471 120 AEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHLQQ-DDFP 198 (281)
Q Consensus 120 ~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~~~~-~~~~ 198 (281)
++.++|. .-.|++..+|+.|.+. .+++|.| ..++.|.+++|||+++.+-+.-|..=. -..|
T Consensus 505 As~~~L~---~v~GiG~~~A~~Iv~y----R~~~G~f-----------~sr~~L~~V~giG~k~~ekl~~FL~i~G~~~p 566 (785)
T 3bzc_A 505 ASAALLA---RISGLNSTLAQNIVAH----RDANGAF-----------RTRDELKKVSRLGEKTFEQAAGFLRVMNGDNP 566 (785)
T ss_dssp CCHHHHH---TSTTCCHHHHHHHHHH----HHHHCCC-----------SSGGGGGGSTTCCHHHHHHHGGGEECTTSSCG
T ss_pred CCHHHHh---hcCCCCHHHHHHHHHH----HHhcCCC-----------CCHHHHHhcCCCCHHHHHHhhheEEECCcccc
Confidence 4544443 2368888899988764 2335765 236778899999999998876654222 2334
Q ss_pred cch---------HHHHHHHHhCC
Q 023471 199 VDT---------HVFEISKAIGW 212 (281)
Q Consensus 199 vD~---------~v~Ri~~rlG~ 212 (281)
.|. .+.+++..+|.
T Consensus 567 LD~t~VHPEsY~~a~kil~~~g~ 589 (785)
T 3bzc_A 567 LDASAVHPETYPLVQRIAADTER 589 (785)
T ss_dssp GGGSSCCGGGHHHHHHHHHHHTC
T ss_pred cccCcCCHHHHHHHHHHHHHcCC
Confidence 442 24567777765
No 80
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=58.03 E-value=2.1 Score=41.62 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=0.0
Q ss_pred HHHHHhcCcCccHHHHHHHHHHh
Q 023471 169 IKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 169 ~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
..++|.+++|||+++|..|..|-
T Consensus 559 s~eeL~~I~GIG~~~A~sI~~ff 581 (615)
T 3sgi_A 559 STDQLAAVEGVGPTIAAAVTEWF 581 (615)
T ss_dssp -----------------------
T ss_pred CHHHHhhCCCCCHHHHHHHHHHH
Confidence 35789999999999999988754
No 81
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=57.78 E-value=15 Score=27.48 Aligned_cols=49 Identities=20% Similarity=0.208 Sum_probs=32.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHhc
Q 023471 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFHL 192 (281)
Q Consensus 132 ~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~~ 192 (281)
+|.....++.|+ + .|-.+++.+... ..+.|..++|||+-.|+-|+..+-
T Consensus 31 ~GIg~~~i~kL~-------e-AG~~Tve~va~a----~~~eL~~i~GIse~ka~kIi~aA~ 79 (114)
T 1b22_A 31 CGINANDVKKLE-------E-AGFHTVEAVAYA----PKKELINIKGISEAKADKILAEAA 79 (114)
T ss_dssp TTCSHHHHHHHH-------T-TCCSSGGGBTSS----BHHHHHTTTTCSTTHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-------H-cCcCcHHHHHhC----CHHHHHHccCCCHHHHHHHHHHHH
Confidence 466654444443 2 132256666543 367899999999999999987664
No 82
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=57.63 E-value=8 Score=29.05 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.0
Q ss_pred HHHHHHhcCcCccHHHHHHHHHHh
Q 023471 168 EIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 168 ~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
.+.-.|..|.|||+.+|..|+..+
T Consensus 13 ~v~~aLt~I~GIG~~~A~~I~~~~ 36 (114)
T 3r8n_M 13 HAVIALTSIYGVGKTRSKAILAAA 36 (114)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHHT
T ss_pred EeHhhHhhhcCcCHHHHHHHHHHc
Confidence 356789999999999999888743
No 83
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=57.25 E-value=14 Score=30.49 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=32.3
Q ss_pred HHHHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHH
Q 023471 102 KAFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146 (281)
Q Consensus 102 ~~~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a 146 (281)
.....|.++|+++++|..++.++|.+ --|++..+|+.|.+..
T Consensus 173 ~~a~~Ll~~fgs~~~l~~a~~e~L~~---v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 173 RTAERILERFGSLERFFTASKAEISK---VEGIGEKRAEEIKKIL 214 (219)
T ss_dssp HHHHHHHHHHSSHHHHTTCCHHHHHH---STTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHhCCHHHHhh---CCCCCHHHHHHHHHHH
Confidence 34456778899999999999988765 3577888888887653
No 84
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=54.92 E-value=36 Score=24.25 Aligned_cols=39 Identities=8% Similarity=0.053 Sum_probs=33.5
Q ss_pred CHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHH
Q 023471 113 TWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLE 151 (281)
Q Consensus 113 t~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~ 151 (281)
+.++|.+++.+|+.++|+..|++..-...|+.+-+...+
T Consensus 32 s~~eIv~lpv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KN 70 (92)
T 1skn_P 32 SAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKN 70 (92)
T ss_dssp CHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 899999999999999999999998777777776665544
No 85
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=52.77 E-value=34 Score=23.13 Aligned_cols=31 Identities=26% Similarity=0.184 Sum_probs=23.0
Q ss_pred chHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHh
Q 023471 157 CLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 157 ~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
+++.+... ..++|..|+||...+|+-+...+
T Consensus 29 tve~vA~~----~~~eL~~I~G~dE~~a~~l~~~A 59 (70)
T 1u9l_A 29 TLEELAYV----PMKELLEIEGLDEPTVEALRERA 59 (70)
T ss_dssp CHHHHHHS----CHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cHHHHHcC----CHHHHhhccCCCHHHHHHHHHHH
Confidence 45554433 36789999999999999887655
No 86
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=52.13 E-value=53 Score=31.31 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=42.6
Q ss_pred HHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHHh
Q 023471 123 KCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 123 eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
+++.+++.-.|-...|++.-.+.|+.|.. -..++..+.+.. .+.|.+|||||..++..|-.+.
T Consensus 11 ~~~a~~~e~~g~~~~r~~aYr~Aa~~l~~--~~~~i~~~~~~~----~~~~~~lp~iG~~~~~~i~~~v 73 (575)
T 3b0x_A 11 EEIGLMSEFLGDNPFRVRAYHQAARTLYD--LDTPIEEIAEKG----KEALMELPGVGPDLAEKILEFL 73 (575)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH--CCSCHHHHHTTC----HHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHh--CCcchhhHhhcc----hhHHHhCCCCCHHHHHHHHHHH
Confidence 34455555566555699999999999987 334555443211 1239999999999998876653
No 87
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=52.10 E-value=9.3 Score=28.63 Aligned_cols=46 Identities=28% Similarity=0.236 Sum_probs=37.9
Q ss_pred HHHHHHhh-CCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHH
Q 023471 103 AFASLKST-FPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLE 151 (281)
Q Consensus 103 ~~~~L~~~-~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~ 151 (281)
...+|.+. |-|.++|+.++.++|.+ --|++..||..|++.|+.+..
T Consensus 37 ~i~kL~eAG~~Tve~va~a~~~eL~~---i~GIse~ka~kIi~aA~kl~~ 83 (114)
T 1b22_A 37 DVKKLEEAGFHTVEAVAYAPKKELIN---IKGISEAKADKILAEAAKLVP 83 (114)
T ss_dssp HHHHHHTTCCSSGGGBTSSBHHHHHT---TTTCSTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCcCcHHHHHhCCHHHHHH---ccCCCHHHHHHHHHHHHHHcc
Confidence 45678777 57999999999987665 468889999999999998764
No 88
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.83 E-value=10 Score=29.78 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.2
Q ss_pred HHHHHHhcCcCccHHHHHHHHHHh
Q 023471 168 EIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 168 ~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
.+.-.|..|.|||..+|..|+..+
T Consensus 20 ~v~~aLt~I~GIG~~~A~~I~~~~ 43 (148)
T 3j20_O 20 QLRWALTAIKGIGINFATMVCRVA 43 (148)
T ss_dssp CHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred EehhhhhhccCcCHHHHHHHHHHh
Confidence 456789999999999999888644
No 89
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=51.13 E-value=8.6 Score=30.20 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=19.2
Q ss_pred HHHHHhcCcCccHHHHHHHHHHh
Q 023471 169 IKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 169 ~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
+.-.|..|+|||..+|..|+..+
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~ 50 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKA 50 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHH
T ss_pred hHhhHhhhcCCCHHHHHHHHHHc
Confidence 45579999999999999888744
No 90
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=51.10 E-value=45 Score=23.72 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=33.9
Q ss_pred CHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHH
Q 023471 113 TWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLE 151 (281)
Q Consensus 113 t~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~ 151 (281)
+.++|.+++.+|+.++|+..||+..-...|+.+-+.-.+
T Consensus 36 s~~~Iv~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRgKN 74 (91)
T 2kz5_A 36 PTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKN 74 (91)
T ss_dssp CHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Confidence 899999999999999999999999877778777666544
No 91
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=50.83 E-value=11 Score=29.75 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=20.3
Q ss_pred HHHHHHhcCcCccHHHHHHHHHHh
Q 023471 168 EIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 168 ~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
.+.-.|..|.|||+.+|..|+..+
T Consensus 25 ~v~~ALt~I~GIG~~~A~~I~~~~ 48 (152)
T 3iz6_M 25 KIMFALTSIKGVGRRFSNIVCKKA 48 (152)
T ss_dssp BHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred EeHhhhhhccCcCHHHHHHHHHHc
Confidence 466789999999999999888744
No 92
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=50.79 E-value=35 Score=23.31 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=33.3
Q ss_pred hhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 129 i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
|..++++. ||... +. +.|-..+.+|..++ .++|++++|+|+++.+-|.-
T Consensus 11 Ie~L~LS~-Ra~Nc------Lk-ragI~Tv~dL~~~s----~~dLlki~n~G~kSl~EI~~ 59 (73)
T 1z3e_B 11 IEELDLSV-RSYNC------LK-RAGINTVQELANKT----EEDMMKVRNLGRKSLEEVKA 59 (73)
T ss_dssp GGGSCCBH-HHHHH------HH-HTTCCBHHHHHTSC----HHHHHTSTTCCHHHHHHHHH
T ss_pred HHHhCCCH-HHHHH------HH-HcCCCcHHHHHcCC----HHHHHHcCCCCHHHHHHHHH
Confidence 56688886 44322 22 23544778887665 46799999999999987653
No 93
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=47.30 E-value=14 Score=29.34 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=19.9
Q ss_pred HHHHHHhcCcCccHHHHHHHHHHh
Q 023471 168 EIKAELSRFRGIGPKTVACVLMFH 191 (281)
Q Consensus 168 ~~~~~L~~l~GIG~~tA~~il~~~ 191 (281)
.+.-.|..|.|||..+|..|+..+
T Consensus 27 ~v~~aLt~I~GIG~~~A~~I~~~~ 50 (155)
T 2xzm_M 27 ITPIALTGIRGIGRRFAYIICKVL 50 (155)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred EEEEeeecccccCHHHHHHHHHHc
Confidence 356789999999999999887643
No 94
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=45.05 E-value=48 Score=23.58 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=31.1
Q ss_pred CHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHH
Q 023471 113 TWEHVLAAEQKCIENAIRCGGLAPTKAACIKNILKC 148 (281)
Q Consensus 113 t~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~ 148 (281)
+.++|.+++.+|+.++|+..+|+..-...|+.+-+.
T Consensus 36 svdqIvnLpv~eFn~lL~~~~Lt~~Ql~lIrdiRRR 71 (90)
T 2lz1_A 36 PVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRR 71 (90)
T ss_dssp CHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 899999999999999999999998777777665543
No 95
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=44.43 E-value=41 Score=23.38 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=33.3
Q ss_pred hhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 129 i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
|..++++. ||... +.. .|-..+.+|..++ .++|++++|+|+++.+-|.-
T Consensus 18 Ie~L~LS~-Ra~Nc------Lk~-agI~Tv~dL~~~s----e~dLlki~n~G~kSl~EI~~ 66 (79)
T 3gfk_B 18 IEELDLSV-RSYNC------LKR-AGINTVQELANKT----EEDMMKVRNLGRKSLEEVKA 66 (79)
T ss_dssp GGGSCCBH-HHHHH------HHH-TTCCBHHHHTTCC----HHHHTTSTTCHHHHHHHHHH
T ss_pred HHHhCCCH-HHHHH------HHH-hCCCCHHHHHhCC----HHHHHHcCCCCHhHHHHHHH
Confidence 55678875 44322 222 3544788887665 46799999999999987753
No 96
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=43.48 E-value=34 Score=23.48 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=35.3
Q ss_pred HHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCcc
Q 023471 116 HVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIG 180 (281)
Q Consensus 116 ~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG 180 (281)
.+..=++++|.+.|..+|+.. .+..+.+ .++|...|..++.+++.+ +.|.-+|
T Consensus 6 ~v~~Ws~~~V~~WL~~lgl~~--------Y~~~F~~--~~idg~~Ll~Lt~~dL~~--lGI~~~g 58 (81)
T 3bq7_A 6 PVHLWGTEEVAAWLEHLSLCE--------YKDIFTR--HDIRGSGLLHLERRDLKD--LGVTKVG 58 (81)
T ss_dssp CGGGCCHHHHHHHHHHTTCGG--------GHHHHHH--TTCCHHHHTTCCHHHHHH--TTCCCHH
T ss_pred ChhhCCHHHHHHHHHHCCCHH--------HHHHHHH--cCCCHHHHCcCCHHHHhH--cCCCCHH
Confidence 355667889999999999875 2234444 557778888887776544 4444334
No 97
>1xg7_A Hypothetical protein; southeast collaboratory for structural genomics, secsg, hyperthermophIle, pyrococcus FU protein structure initiative; 1.88A {Pyrococcus furiosus} SCOP: a.96.1.6
Probab=40.89 E-value=1e+02 Score=26.27 Aligned_cols=144 Identities=14% Similarity=0.170 Sum_probs=83.8
Q ss_pred HHHhhhccHHHHHHHHHHHHhhCC--CHHHHHhCCHHHHHHHhhhCC----CchHHHHHHHHHHHHHHHHcCCCchHHHh
Q 023471 89 TVLSQNTTEANSLKAFASLKSTFP--TWEHVLAAEQKCIENAIRCGG----LAPTKAACIKNILKCLLESKGKLCLEYLR 162 (281)
Q Consensus 89 ~ILsqqts~~~a~~~~~~L~~~~p--t~~~la~~~~eel~~~i~~~G----~~~~KA~~I~~~a~~i~~~~g~~~l~~l~ 162 (281)
++.|-|-+...- ..|..|.+-|. ++.+| .+++.+.++..+ +.++|.++|..+...+. .+.++++.
T Consensus 58 aLvSYQLsgkGE-e~W~~Fs~yfs~~~~~~l----~~~~~~Fl~~S~~n~Rl~~~KikRi~k~~~~l~----~L~~~d~~ 128 (250)
T 1xg7_A 58 SLVSYQLTGRGE-DWWWEFARYFSGREVDSI----WKAYGEFLPKSKNNRRLIEAKLNRIRKVEGFLS----TLTLKDLE 128 (250)
T ss_dssp HHTCSSCSSCHH-HHHHHHHHHHTTCCCSCH----HHHHHHHTTTCSSCCSSHHHHHHHHHHHHHHHH----TCCHHHHH
T ss_pred HHHHHhcCCcHH-HHHHHHHHHHhcCChhHH----HHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHH----HHhhhhHH
Confidence 666777665432 55666655552 12211 244555777443 45789999999976654 35544444
Q ss_pred cC--ChHHHHHHHhcCcCcc---------HHHHHHHHHHhcCC--C-----ccccchHHHHHHHHhCCCCCCCCHHHHHH
Q 023471 163 GL--SIDEIKAELSRFRGIG---------PKTVACVLMFHLQQ--D-----DFPVDTHVFEISKAIGWVPTAADRNKTYL 224 (281)
Q Consensus 163 ~~--~~~~~~~~L~~l~GIG---------~~tA~~il~~~~~~--~-----~~~vD~~v~Ri~~rlG~~~~~~~~~~~~~ 224 (281)
.. +.+.+++.|..+-|-. -|+..+....++|. + -+|||.-+..+..++ ++++.+.
T Consensus 129 ~y~~dl~~l~~~LA~~l~s~~~~KTIVFAvKM~~Ya~r~~~g~~~p~p~~IpIPvD~Ri~~~T~kl-------~~~~~~~ 201 (250)
T 1xg7_A 129 GYYKNMKMLWKALIKIMGSREDSKTIVFTVKMFGYASRIAFSRFIPYPMEIPIPEDLRIKSVTSKL-------TQEKPTK 201 (250)
T ss_dssp HHHHTHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCCCHHHHHHHHTT-------CSSCHHH
T ss_pred HHHhHHHHHHHHHHHHhCCCCCcceeehHHHHHHHHHHHHcCCCCCCCCCCCCcchHHHHHHHHHh-------chhHHHH
Confidence 32 5677888888776665 24444455556674 2 488999999988865 2333444
Q ss_pred HHHhhCC--cccHHHHHHHHH-Hhccc
Q 023471 225 HLNQRIP--KELKFDLNCLLY-THGKL 248 (281)
Q Consensus 225 ~l~~~~p--~~~~~~~h~~lv-~~G~~ 248 (281)
.+..... .--.-.+...++ .+|..
T Consensus 202 ~W~~Va~~sgIPpLHLDSilW~~lG~~ 228 (250)
T 1xg7_A 202 FWMKIGQESGVPPLHIDSLIWPLLGNA 228 (250)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCcceehhHHHHHhcCc
Confidence 4433211 112446667777 67754
No 98
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=40.23 E-value=70 Score=33.00 Aligned_cols=71 Identities=8% Similarity=0.060 Sum_probs=40.8
Q ss_pred HHHHHhCCHHHHHHHhhhCCCch--------HHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHH
Q 023471 114 WEHVLAAEQKCIENAIRCGGLAP--------TKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVA 185 (281)
Q Consensus 114 ~~~la~~~~eel~~~i~~~G~~~--------~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~ 185 (281)
..++..+++++ |..+|++. .-.+.|-....-+++.- |+|+..... .+-....|..++||||..|.
T Consensus 659 LaElvki~pkd----i~sigvg~yQhdv~q~~L~~~L~~vv~d~VN~v-GVdiNtA~~--~~~s~~lL~~v~GlGp~kA~ 731 (1030)
T 3psf_A 659 LLEYANLTSEE----VRSLSIHPHQNLLSSEQLSWALETAFVDIVNLV-SVEVNKATD--NNYYASALKYISGFGKRKAI 731 (1030)
T ss_dssp HHHHHTSCHHH----HHTSCCCTTGGGSCHHHHHHHHHHHHHHHHHHH-CEEHHHHHT--CHHHHTTGGGSTTCCHHHHH
T ss_pred HHHHhccCccc----ceeeeccccccccCHHHHHHHHHHHHHhhcccc-CccHHHhhc--CcCCHHHHhhCCCCCHHHHH
Confidence 34556666544 34566542 23344444444445433 456554321 22346678889999999999
Q ss_pred HHHHHh
Q 023471 186 CVLMFH 191 (281)
Q Consensus 186 ~il~~~ 191 (281)
.|+.+-
T Consensus 732 ~Iv~~r 737 (1030)
T 3psf_A 732 DFLQSL 737 (1030)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988654
No 99
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=40.12 E-value=6 Score=33.45 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHH
Q 023471 105 ASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNI 145 (281)
Q Consensus 105 ~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~ 145 (281)
..|.++|++++.|.+++.++|.++ |++...|+.|.+.
T Consensus 187 k~Ll~~FGSl~~i~~As~eeL~~V----GIG~~~A~~I~~~ 223 (226)
T 3c65_A 187 KALLNYFGSVKKMKEATVEELQRA----NIPRAVAEKIYEK 223 (226)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHhCCHHHHHhCCHHHHHHc----CCCHHHHHHHHHH
Confidence 346667889999999998887663 6666677766553
No 100
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=37.72 E-value=22 Score=29.85 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=19.6
Q ss_pred HHHHHhcCcCccHHHHHHHHHHhcCC
Q 023471 169 IKAELSRFRGIGPKTVACVLMFHLQQ 194 (281)
Q Consensus 169 ~~~~L~~l~GIG~~tA~~il~~~~~~ 194 (281)
....|..|||||++++..++. .||.
T Consensus 166 ~~s~LdgIpGIG~k~ak~Ll~-~FgS 190 (220)
T 2nrt_A 166 LRSVLDNVPGIGPIRKKKLIE-HFGS 190 (220)
T ss_dssp HHHHHTTSTTCCHHHHHHHHH-HHCS
T ss_pred ccccccCCCCcCHHHHHHHHH-HcCC
Confidence 345688999999999997776 5553
No 101
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=37.71 E-value=14 Score=28.14 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=18.9
Q ss_pred HHHHHHhcCcCccHHHHHHHHH
Q 023471 168 EIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 168 ~~~~~L~~l~GIG~~tA~~il~ 189 (281)
.+.-.|..|.|||+.+|..|+.
T Consensus 14 ~v~~aLt~I~GIG~~~A~~I~~ 35 (126)
T 2vqe_M 14 RVDVALTYIYGIGKARAKEALE 35 (126)
T ss_dssp BHHHHHTTSSSCCSHHHHHHTT
T ss_pred EeeeehhccccccHHHHHHHHH
Confidence 3567899999999999998876
No 102
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=37.21 E-value=63 Score=22.78 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=32.2
Q ss_pred hhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 129 i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
|..++++. |+.. .+.. .|-..+.+|..++ .++|++++|+|+++.+-|.-
T Consensus 14 I~~L~LSv-Ra~N------cLkr-agI~Tv~dL~~~s----e~dLlki~n~G~KSl~EI~~ 62 (86)
T 3k4g_A 14 VDDLELTV-RSAN------CLXA-EAIHYIGDLVQRT----EVELLXTPNLGXXSLTEIXD 62 (86)
T ss_dssp GGGGCCCH-HHHH------HHHH-TTCCBHHHHHHSC----HHHHHTSTTCCHHHHHHHHH
T ss_pred HHHhCCCH-HHHH------HHHH-cCCCcHHHHHhCC----HHHHhhccccCcccHHHHHH
Confidence 45577775 4332 2222 3444677776554 46799999999999998764
No 103
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=37.08 E-value=83 Score=33.09 Aligned_cols=71 Identities=8% Similarity=0.060 Sum_probs=39.8
Q ss_pred HHHHHhCCHHHHHHHhhhCCCch--------HHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHH
Q 023471 114 WEHVLAAEQKCIENAIRCGGLAP--------TKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVA 185 (281)
Q Consensus 114 ~~~la~~~~eel~~~i~~~G~~~--------~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~ 185 (281)
..+++.+++++ |..+|++. .-.+.|-....-+++.- |+|+..... .+-....|..++||||..|.
T Consensus 656 LaElvki~pkd----i~sigvg~yQhdv~q~~L~~~L~~vv~d~VN~v-GVdiNtA~~--~~~s~~lL~~v~GlGp~kA~ 728 (1219)
T 3psi_A 656 LLEYANLTSEE----VRSLSIHPHQNLLSSEQLSWALETAFVDIVNLV-SVEVNKATD--NNYYASALKYISGFGKRKAI 728 (1219)
T ss_dssp HHHHHHSCHHH----HHTSCCCTTGGGSCHHHHHHHHHHHHHHHHHHH-CEEHHHHTT--CHHHHTTGGGSTTCCHHHHH
T ss_pred HHHHhccCccc----ceeeeccccccccCHHHHHHHHHHHHHHHHhcc-CccHHHhhc--CcCCHHHHHhCCCCCHHHHH
Confidence 34455555543 24566532 23334444444444433 456554321 23346778889999999999
Q ss_pred HHHHHh
Q 023471 186 CVLMFH 191 (281)
Q Consensus 186 ~il~~~ 191 (281)
.|+.+-
T Consensus 729 ~Iv~~r 734 (1219)
T 3psi_A 729 DFLQSL 734 (1219)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
No 104
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=35.12 E-value=48 Score=23.34 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=35.6
Q ss_pred HHHhCCHHHHHHHhhhC-CCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccH
Q 023471 116 HVLAAEQKCIENAIRCG-GLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181 (281)
Q Consensus 116 ~la~~~~eel~~~i~~~-G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~ 181 (281)
.+..=+.++|.+.|+.. |+.. .+..+.+ ..+|-+.|-.++.++++++ +.|+ +|+
T Consensus 13 ~v~~Ws~edV~~wL~~l~gl~~--------y~~~F~~--~~IdG~~LL~Lt~~dL~k~-lgIk-lG~ 67 (89)
T 1kw4_A 13 PISSWSVDDVSNFIRELPGCQD--------YVDDFIQ--QEIDGQALLRLKEKHLVNA-MGMK-LGP 67 (89)
T ss_dssp CGGGCCHHHHHHHHHTSTTCGG--------GHHHHHH--TTCCHHHHHHCCHHHHHTT-TCCC-HHH
T ss_pred CchhCCHHHHHHHHHHCcChHH--------HHHHHHH--hCccHHHHhcCCHHHHHHH-cCCC-HHH
Confidence 35566788999999988 8854 3344555 5678888887776654333 4453 565
No 105
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=34.47 E-value=17 Score=31.88 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.8
Q ss_pred cCcCccHHHHHHHHH
Q 023471 175 RFRGIGPKTVACVLM 189 (281)
Q Consensus 175 ~l~GIG~~tA~~il~ 189 (281)
.+||||+|||--++.
T Consensus 207 GVpGIG~KTA~kLL~ 221 (290)
T 1exn_A 207 GVEGIGAKRGYNIIR 221 (290)
T ss_dssp CCTTCCHHHHHHHHH
T ss_pred CCCcCCHhHHHHHHH
Confidence 489999999987765
No 106
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=33.63 E-value=50 Score=23.32 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=36.7
Q ss_pred HHhCCHHHHHHHhhhC--CCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccH
Q 023471 117 VLAAEQKCIENAIRCG--GLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGP 181 (281)
Q Consensus 117 la~~~~eel~~~i~~~--G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~ 181 (281)
+..=+.++|.+.|+.. |+.. .+..+.+ ..+|-+.|-.++.+++++. +.++ +|+
T Consensus 14 v~~WsvedV~~wl~~~~~g~~~--------y~~~F~~--~eIDG~aLL~Lt~~dl~~~-mgik-lGp 68 (89)
T 1pk1_B 14 PIDWTIEEVIQYIESNDNSLAV--------HGDLFRK--HEIDGKALLRLNSERMMKY-MGLK-LGP 68 (89)
T ss_dssp GGGCCHHHHHHHHHHHCGGGGG--------GHHHHHH--TTCCHHHHHTCCHHHHHHH-SCCC-HHH
T ss_pred chhCCHHHHHHHHHHHccchHH--------HHHHHHH--cCcChHHHhcCCHHHHHHc-cCCC-ccH
Confidence 3455788888888776 5543 3445555 5678888888887777665 5575 787
No 107
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=33.18 E-value=73 Score=29.09 Aligned_cols=55 Identities=11% Similarity=0.188 Sum_probs=40.1
Q ss_pred HHHhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhc
Q 023471 116 HVLAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSR 175 (281)
Q Consensus 116 ~la~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~ 175 (281)
.|..++.+||.+.+..+|...-||+.| .+++..+ +..|++.|.+++- .+++.|.+
T Consensus 19 ~l~~~~~~~l~~~~~~~g~~~fra~qi---~~w~~~~-~~~~~~~mt~l~k-~~r~~l~~ 73 (404)
T 3rfa_A 19 NLLDLNRQQMREFFKDLGEKPFRADQV---MKWMYHY-CCDNFDEMTDINK-VLRGKLKE 73 (404)
T ss_dssp EGGGCCHHHHHHHHHHTTCCHHHHHHH---HHHHHHS-CCCCGGGCTTSCH-HHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCcchHHHHH---HHHHHhc-CCCChHHhcccCH-HHHHHHHh
Confidence 577899999999999999988777765 4577662 4457777776653 45666643
No 108
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=32.25 E-value=9.5 Score=32.49 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=0.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHHH
Q 023471 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLMF 190 (281)
Q Consensus 132 ~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~~ 190 (281)
-|++..+++.|.+. - ++ +++.+. ....+.|.+++|||+++|.-|...
T Consensus 21 pGIGpk~a~~Ll~~--g----f~--sve~L~----~a~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 21 SGVGPSKAESLREA--G----FE--SVEDVR----GADQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp -----------------------------------------------------------
T ss_pred CCCCHHHHHHHHHc--C----CC--CHHHHH----hCCHHHHHhccCCCHHHHHHHHHH
Confidence 46666666666542 0 12 334443 234678999999999999998653
No 109
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=32.23 E-value=9.5 Score=32.19 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHhcCcCccHHHHHHHH
Q 023471 171 AELSRFRGIGPKTVACVL 188 (281)
Q Consensus 171 ~~L~~l~GIG~~tA~~il 188 (281)
++|.++ |||+++|..|.
T Consensus 205 eeL~~V-GIG~~~A~~I~ 221 (226)
T 3c65_A 205 EELQRA-NIPRAVAEKIY 221 (226)
T ss_dssp ------------------
T ss_pred HHHHHc-CCCHHHHHHHH
Confidence 345555 55555555443
No 110
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=29.12 E-value=23 Score=31.66 Aligned_cols=15 Identities=40% Similarity=0.753 Sum_probs=12.8
Q ss_pred cCcCccHHHHHHHHH
Q 023471 175 RFRGIGPKTVACVLM 189 (281)
Q Consensus 175 ~l~GIG~~tA~~il~ 189 (281)
.|||||++||--++.
T Consensus 236 gipGiG~KtA~kll~ 250 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQ 250 (341)
T ss_dssp CCTTCCHHHHHHHHH
T ss_pred CCCCccHHHHHHHHH
Confidence 589999999987765
No 111
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=28.85 E-value=23 Score=36.52 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=30.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHH
Q 023471 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVL 188 (281)
Q Consensus 132 ~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il 188 (281)
.|++.+||+.|.+.-+ +.+|.+ ..++.|.+++|||+++-.-..
T Consensus 723 ~GlGp~kA~~Iv~~r~---~~~G~f-----------~sr~~L~~v~~iG~k~fe~~a 765 (1030)
T 3psf_A 723 SGFGKRKAIDFLQSLQ---RLNEPL-----------LARQQLITHNILHKTIFMNSA 765 (1030)
T ss_dssp TTCCHHHHHHHHHHHH---HTCSCC-----------CCTTHHHHTTSSCHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH---HhCCCC-----------CCHHHHHhcCCccHHHHHhcc
Confidence 6888888888765432 334654 246789999999999966543
No 112
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=27.17 E-value=32 Score=36.20 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=30.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 132 GGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 132 ~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
.|++.+||+.|.+.-+ +.+|.+ ..++.|..++|||+++-.-..-
T Consensus 720 ~GlGp~kA~~Iv~~r~---~~~G~f-----------~sr~~L~~v~~iG~k~fe~~ag 763 (1219)
T 3psi_A 720 SGFGKRKAIDFLQSLQ---RLNEPL-----------LARQQLITHNILHKTIFMNSAG 763 (1219)
T ss_dssp TTCCHHHHHHHHHHHH---HHCSCC-----------CCTTHHHHTTCSCHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHH---HhCCCC-----------CCHHHHhhCCCccHHHHHhccc
Confidence 6888888888765432 334654 2467899999999998655443
No 113
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=25.54 E-value=1.4e+02 Score=19.94 Aligned_cols=42 Identities=7% Similarity=-0.051 Sum_probs=29.3
Q ss_pred HhCCHHHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHH
Q 023471 118 LAAEQKCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEI 169 (281)
Q Consensus 118 a~~~~eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~ 169 (281)
..=++++|.+.|..+|+.. .+..+.+ .++|.+.|..++.+++
T Consensus 3 ~~Ws~~~V~~WL~~lgl~~--------Y~~~F~~--~~idg~~Ll~Lt~~dL 44 (76)
T 2f3n_A 3 QLWSKFDVGDWLESIHLGE--------HRDRFED--HEIEGAHLPALTKEDF 44 (76)
T ss_dssp GGCCHHHHHHHHHHTTCGG--------GHHHHHH--TTCCGGGGGGCCHHHH
T ss_pred hhCCHHHHHHHHHHCCCHH--------HHHHHHH--cCCCHHHHccCCHHHH
Confidence 3447889999999999974 2333444 4577777877777665
No 114
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=24.94 E-value=18 Score=34.70 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=14.3
Q ss_pred HHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 123 KCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 123 eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
.++...|...|++...|..| .+.||.-.++.+..-++ .|..+.|||.++||.|..
T Consensus 8 ~~~~~~l~~~g~~~~~a~~i-------~~~yg~~~~~~i~~nPy-----~l~~i~gigf~~aD~ia~ 62 (574)
T 3e1s_A 8 RRLLAGLQGLGLTINQAQRA-------VKHFGADALDRLEKDLF-----TLTEVEGIGFLTADKLWQ 62 (574)
T ss_dssp -------------------------------------------C-----GGGTSSSCCHHHHHTTC-
T ss_pred HHHHHHHHHcCCCHHHHHHH-------HHHHHHHHHHHHHhCCc-----ccCCcCCCCHHHHHHHHH
Confidence 44555677788886544443 44566544444432222 357899999999998654
No 115
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=23.75 E-value=62 Score=31.68 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=31.5
Q ss_pred HHHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHH
Q 023471 103 AFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146 (281)
Q Consensus 103 ~~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a 146 (281)
....|.++|+++++|..++.++|.+ --|++...|+.|.++.
T Consensus 524 ~Ak~La~~Fgsl~~l~~As~eeL~~---i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 524 TAAGLAAYFGTLEALEAASIEELQK---VPDVGIVVASHVHNFF 564 (671)
T ss_dssp HHHHHHHHHCSHHHHHTCCHHHHTT---STTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHhCCHHHHhh---cCCCCHHHHHHHHHHH
Confidence 4566778899999999999887654 3577777888876654
No 116
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=23.39 E-value=51 Score=23.88 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=31.9
Q ss_pred hhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHhcCcCccHHHHHHHHH
Q 023471 129 IRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELSRFRGIGPKTVACVLM 189 (281)
Q Consensus 129 i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~~l~GIG~~tA~~il~ 189 (281)
|..++++. |+.. .+. +.|-..+.+|..++ .+.|++++|+|+++.+-|.-
T Consensus 26 Ie~L~LSv-Rs~N------cLk-ragI~Tv~dL~~~s----e~dLlki~n~G~KSl~EI~~ 74 (98)
T 1coo_A 26 VDDLELTV-RSAN------CLK-AEAIHYIGDLVQRT----EVELLKTPNLGKKSLTEIKD 74 (98)
T ss_dssp GGGGTCCT-TTHH------HHH-TTTCCBHHHHHTSC----HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHhCCCH-HHHH------HHH-HcCCCcHHHHHhCC----HHHHHhcCCCCHHHHHHHHH
Confidence 55677775 3322 222 22444777777654 46799999999999987753
No 117
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=23.33 E-value=46 Score=22.91 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=32.0
Q ss_pred CHHHHHhCCHHHHHHHhhhCCCch--HHHHHHHHHHHHHHH
Q 023471 113 TWEHVLAAEQKCIENAIRCGGLAP--TKAACIKNILKCLLE 151 (281)
Q Consensus 113 t~~~la~~~~eel~~~i~~~G~~~--~KA~~I~~~a~~i~~ 151 (281)
.+.++..+.+.||.+.++.-|+.- .|+..|.++..++.+
T Consensus 22 l~~~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 22 LPANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp CCTTTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHT
T ss_pred chHHHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 455777889999999999999864 799988888877765
No 118
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=23.10 E-value=36 Score=30.08 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.4
Q ss_pred hcCcCccHHHHHHHHH
Q 023471 174 SRFRGIGPKTVACVLM 189 (281)
Q Consensus 174 ~~l~GIG~~tA~~il~ 189 (281)
-.+||||++||--++.
T Consensus 238 pGv~GiG~KtA~kLl~ 253 (336)
T 1rxw_A 238 EGVKGVGVKKALNYIK 253 (336)
T ss_dssp CCCTTCCHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHH
Confidence 3699999999987765
No 119
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=23.09 E-value=48 Score=23.69 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=17.3
Q ss_pred HHHhcCcCccHHHHHHHHHHhcC
Q 023471 171 AELSRFRGIGPKTVACVLMFHLQ 193 (281)
Q Consensus 171 ~~L~~l~GIG~~tA~~il~~~~~ 193 (281)
..|..||+||+.++..+...+..
T Consensus 4 ~~L~~LPNiG~~~e~~L~~vGI~ 26 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAGIK 26 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCC
T ss_pred HHhhcCCCCCHHHHHHHHHcCCC
Confidence 35889999999999876554443
No 120
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=22.83 E-value=98 Score=23.04 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=31.0
Q ss_pred HHHHhCCHHHHHHHhhhCCCch--HHHHHHHHHHHHHHH
Q 023471 115 EHVLAAEQKCIENAIRCGGLAP--TKAACIKNILKCLLE 151 (281)
Q Consensus 115 ~~la~~~~eel~~~i~~~G~~~--~KA~~I~~~a~~i~~ 151 (281)
..+..+..+||.+.++..|+.. .|+..+..+..++..
T Consensus 35 ~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~ 73 (114)
T 2rnn_A 35 TLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQN 73 (114)
T ss_dssp HHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHh
Confidence 3456788999999999999865 899999999888875
No 121
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=22.36 E-value=96 Score=30.34 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=31.1
Q ss_pred HHHHHHhhCCCHHHHHhCCHHHHHHHhhhCCCchHHHHHHHHHH
Q 023471 103 AFASLKSTFPTWEHVLAAEQKCIENAIRCGGLAPTKAACIKNIL 146 (281)
Q Consensus 103 ~~~~L~~~~pt~~~la~~~~eel~~~i~~~G~~~~KA~~I~~~a 146 (281)
....|.++|+++++|..++.++|.+ + -|++...|+.|.+..
T Consensus 519 ~Ak~La~~Fgsl~~l~~As~eeL~~-I--~GIG~~~A~sI~~ff 559 (667)
T 1dgs_A 519 LARNLARRFGTMDRLLEASLEELIE-V--EEVGELTARAILETL 559 (667)
T ss_dssp HHHHHHHTTSBHHHHTTCCHHHHHT-S--TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHhCCHHHHHh-c--cCcCHHHHHHHHHHH
Confidence 4566778899999999999988774 3 466667787776544
No 122
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=22.28 E-value=40 Score=21.25 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=28.4
Q ss_pred HHHhCCHHHHHHHhhhCCCch--HHHHHHHHHHHHHHH
Q 023471 116 HVLAAEQKCIENAIRCGGLAP--TKAACIKNILKCLLE 151 (281)
Q Consensus 116 ~la~~~~eel~~~i~~~G~~~--~KA~~I~~~a~~i~~ 151 (281)
++..+.+.+|.+.++.-|+.. .|+..|..+..++.+
T Consensus 9 ~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~~ 46 (50)
T 1zrj_A 9 DVRRLKVNELREELQRRGLDTRGLKAELAERLQAALSG 46 (50)
T ss_dssp CGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHCC
T ss_pred CHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 456788899999999988864 788888887777643
No 123
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=22.17 E-value=38 Score=30.49 Aligned_cols=15 Identities=40% Similarity=0.738 Sum_probs=13.2
Q ss_pred cCcCccHHHHHHHHH
Q 023471 175 RFRGIGPKTVACVLM 189 (281)
Q Consensus 175 ~l~GIG~~tA~~il~ 189 (281)
.+||||++||--++.
T Consensus 255 GVpGIG~KtA~kLl~ 269 (363)
T 3ory_A 255 GFEGIGPKKALQLVK 269 (363)
T ss_dssp CSTTCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHH
Confidence 788999999988776
No 124
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.95 E-value=2.5e+02 Score=20.99 Aligned_cols=57 Identities=25% Similarity=0.264 Sum_probs=33.5
Q ss_pred HHHHHHhhhCCCchHHHHHHHHHHHHHHHHcCCCchHHHhcCChHHHHHHHh-cCcCccHHHHHHHHH
Q 023471 123 KCIENAIRCGGLAPTKAACIKNILKCLLESKGKLCLEYLRGLSIDEIKAELS-RFRGIGPKTVACVLM 189 (281)
Q Consensus 123 eel~~~i~~~G~~~~KA~~I~~~a~~i~~~~g~~~l~~l~~~~~~~~~~~L~-~l~GIG~~tA~~il~ 189 (281)
+++.+.++..|+...+.+. .+++.+.+..+.+ +.+++.+.|. ..++||.-|+.-.|.
T Consensus 7 ~~~~~~l~~~g~r~T~qR~--~Il~~L~~~~~~~--------sa~ei~~~l~~~~~~is~aTVYR~L~ 64 (145)
T 2fe3_A 7 KEALETLKETGVRITPQRH--AILEYLVNSMAHP--------TADDIYKALEGKFPNMSVATVYNNLR 64 (145)
T ss_dssp HHHHHHHHHTTCCCCHHHH--HHHHHHHHCSSCC--------CHHHHHHHHGGGCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHH--HHHHHHHhCCCCC--------CHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 3455667777754433332 2334444322222 5777888885 568999999876654
No 125
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=21.88 E-value=39 Score=30.06 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=14.4
Q ss_pred Hh-cCcCccHHHHHHHHHH
Q 023471 173 LS-RFRGIGPKTVACVLMF 190 (281)
Q Consensus 173 L~-~l~GIG~~tA~~il~~ 190 (281)
+- .+||||++||--++.-
T Consensus 235 ~p~Gv~GIG~KtA~kLi~~ 253 (346)
T 2izo_A 235 NPDGIRGIGPERALKIIKK 253 (346)
T ss_dssp STTCSTTCCHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHH
Confidence 44 7899999999877763
No 126
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=21.21 E-value=42 Score=29.53 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=13.9
Q ss_pred cCcCccHHHHHHHHHH
Q 023471 175 RFRGIGPKTVACVLMF 190 (281)
Q Consensus 175 ~l~GIG~~tA~~il~~ 190 (281)
.+||||++||--++.-
T Consensus 229 GvpGiG~ktA~kli~~ 244 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS 244 (326)
T ss_dssp TTTTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHc
Confidence 7899999999877775
No 127
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=20.95 E-value=42 Score=30.01 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=12.9
Q ss_pred cCcCccHHHHHHHHH
Q 023471 175 RFRGIGPKTVACVLM 189 (281)
Q Consensus 175 ~l~GIG~~tA~~il~ 189 (281)
.+||||++||--++.
T Consensus 229 gv~GiG~ktA~kli~ 243 (352)
T 3qe9_Y 229 SLRGIGLAKACKVLR 243 (352)
T ss_dssp CCTTCCHHHHHHHHH
T ss_pred CCCCeeHHHHHHHHH
Confidence 699999999977665
Done!