BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023473
         (281 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
           Angstroms Resolution
 pdb|1D7K|B Chain B, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
           Angstroms Resolution
          Length = 421

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 176 PDERSYNKECQGPVCNRSEKLWENSEFPE 204
           PDER Y+    GP C+  +++ E  + PE
Sbjct: 340 PDERYYSSSIWGPTCDGLDRIVERCDLPE 368


>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And
           Leishmania Donovani Ornithine Decarboxylases By
           3-Aminooxy- 1-Aminopropane
 pdb|2ON3|B Chain B, A Structural Insight Into The Inhibition Of Human And
           Leishmania Donovani Ornithine Decarboxylases By
           3-Aminooxy- 1-Aminopropane
          Length = 461

 Score = 28.9 bits (63), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 176 PDERSYNKECQGPVCNRSEKLWENSEFPE 204
           PDE+ Y+    GP C+  +++ E  + PE
Sbjct: 346 PDEKYYSSSIWGPTCDGLDRIVERCDLPE 374


>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And
           Leishmania Donovani Ornithine Decarboxylases By
           3-Aminooxy-1-Aminopropane
 pdb|2OO0|B Chain B, A Structural Insight Into The Inhibition Of Human And
           Leishmania Donovani Ornithine Decarboxylases By
           3-Aminooxy-1-Aminopropane
          Length = 471

 Score = 28.9 bits (63), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 176 PDERSYNKECQGPVCNRSEKLWENSEFPE 204
           PDE+ Y+    GP C+  +++ E  + PE
Sbjct: 356 PDEKYYSSSIWGPTCDGLDRIVERCDLPE 384


>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse,
           Truncated 37 Residues From The C-Terminus, To 1.6
           Angstrom Resolution
          Length = 424

 Score = 28.5 bits (62), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 176 PDERSYNKECQGPVCNRSEKLWENSEFPE 204
           PDE+ Y+    GP C+  +++ E    PE
Sbjct: 346 PDEKYYSSSIWGPTCDGLDRIVERCNLPE 374


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,833,103
Number of Sequences: 62578
Number of extensions: 296121
Number of successful extensions: 466
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 4
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)