BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023473
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28J24|TAF8_XENTR Transcription initiation factor TFIID subunit 8 OS=Xenopus
tropicalis GN=taf8 PE=2 SV=1
Length = 293
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 26/158 (16%)
Query: 36 KVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNAL 95
+V VS + GF++AE +A+E+LT + YL ++ A SY R++ L D+ L
Sbjct: 28 QVVVSSLLTEAGFESAEKAAVESLTEMLQSYLSEIGRSAKSYCEHTARTQPTLPDIVVTL 87
Query: 96 NDVSSGQGFPGASALNRNCMLDSGVLKEIAGFVRHGCEIPFAKPIPRSKNAHANSVCCKK 155
++ GF ++ + + + + P P + N
Sbjct: 88 IEM----GF---------------NVESLPAYAKRSQRMVITAP-PVTNNPVVPKALSAG 127
Query: 156 ENDRGSRSLHLHIPKWLPAFPDERSYNK--ECQGPVCN 191
+N + HIP P FPD +Y K + PVC+
Sbjct: 128 QNKQHP----AHIPSHFPEFPDPHTYIKTPTYREPVCD 161
>sp|Q7ZYA2|TAF8_XENLA Transcription initiation factor TFIID subunit 8 OS=Xenopus laevis
GN=taf8 PE=2 SV=1
Length = 293
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 28/159 (17%)
Query: 36 KVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNAL 95
+V VS + GF +AE +A+E+LT + YL ++ A SY R++ L D+ L
Sbjct: 28 QVVVSSLLTEAGFDSAEKAAVESLTEMLQSYLSEIGRSAKSYCEHTARTQPTLPDIVVTL 87
Query: 96 NDVSSGQGFPGASALNRNCMLDSGVLKEIAGFVRHGCEIPFAKPIPRSKNAHANSVCCKK 155
++ GF +DS + + + + P N+ K
Sbjct: 88 IEM----GF----------NVDS-----LPAYAKRSQRMVITAP------PVTNNPVVPK 122
Query: 156 ENDRGSRSLH-LHIPKWLPAFPDERSYNK--ECQGPVCN 191
G H HIP P FPD +Y K + PVC+
Sbjct: 123 ALSAGDNKPHPAHIPSHFPEFPDPHTYIKTPTYREPVCD 161
>sp|Q5VWG9|TAF3_HUMAN Transcription initiation factor TFIID subunit 3 OS=Homo sapiens
GN=TAF3 PE=1 SV=1
Length = 929
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 19/146 (13%)
Query: 30 FAFTVTKVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLV 89
++ ++ +V+V+QIC+++G+ + + SA LT V +YLQQL YS + R++ L
Sbjct: 5 YSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPILD 64
Query: 90 DLTNALNDVSSGQGFPGASALNRNCMLDSGVLKEIAGFVRHGCEIPFAKPIPRSKNAHAN 149
D+ G+ F L L E+ ++ + + F IP + N
Sbjct: 65 DV---------GEAF----------QLMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNN 105
Query: 150 SVCCKKENDRGSRSLHLHIPKWLPAF 175
+ + + + +IP +LP
Sbjct: 106 VLQFPQPGSKDAEERKEYIPDYLPPI 131
>sp|Q5HZG4|TAF3_MOUSE Transcription initiation factor TFIID subunit 3 OS=Mus musculus
GN=Taf3 PE=1 SV=2
Length = 932
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 19/146 (13%)
Query: 30 FAFTVTKVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLV 89
++ ++ +V+V+QIC+++G+ + + SA LT V +YLQQL YS + R++ L
Sbjct: 5 YSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPILD 64
Query: 90 DLTNALNDVSSGQGFPGASALNRNCMLDSGVLKEIAGFVRHGCEIPFAKPIPRSKNAHAN 149
D+ G+ F L L E+ ++ + + F IP + N
Sbjct: 65 DV---------GEAF----------QLMGVNLHELEDYIHNIEPVTFPHQIPSFPVSKNN 105
Query: 150 SVCCKKENDRGSRSLHLHIPKWLPAF 175
+ + + + +IP +LP
Sbjct: 106 VLQFPQPGSKDAEERKDYIPDYLPPI 131
>sp|Q9EQH4|TAF8_MOUSE Transcription initiation factor TFIID subunit 8 OS=Mus musculus
GN=Taf8 PE=2 SV=1
Length = 308
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 26/149 (17%)
Query: 36 KVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNAL 95
+V VS + GF++AE +++ETLT + Y+ ++ A SY R++ L D+ L
Sbjct: 36 QVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 95
Query: 96 NDVSSGQGFPGASALNRNCMLDSGVLKEIAGFVRHGCEIPFAKPIPRSKNAHANSVCCKK 155
++ GF + + + + + P N K
Sbjct: 96 VEM----GF---------------NVDTLPAYAKRSQRMVITAP------PVTNQPVTPK 130
Query: 156 ENDRGSRSLH-LHIPKWLPAFPDERSYNK 183
G H HIP P FPD +Y K
Sbjct: 131 ALTAGQNRPHPPHIPSHFPEFPDPHTYIK 159
>sp|A7MAZ4|TAF8_BOVIN Transcription initiation factor TFIID subunit 8 OS=Bos taurus
GN=TAF8 PE=2 SV=1
Length = 310
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 26/149 (17%)
Query: 36 KVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNAL 95
+V VS + GF++AE +++ETLT + Y+ ++ A SY R++ L D+ L
Sbjct: 38 QVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 97
Query: 96 NDVSSGQGFPGASALNRNCMLDSGVLKEIAGFVRHGCEIPFAKPIPRSKNAHANSVCCKK 155
++ GF + + + + + P N K
Sbjct: 98 VEM----GF---------------NVDTLPAYAKRSQRMVITAP------PVTNQPVTPK 132
Query: 156 ENDRGSRSLH-LHIPKWLPAFPDERSYNK 183
G H HIP P FPD +Y K
Sbjct: 133 ALTAGQNRPHPPHIPSHFPEFPDPHTYIK 161
>sp|Q7Z7C8|TAF8_HUMAN Transcription initiation factor TFIID subunit 8 OS=Homo sapiens
GN=TAF8 PE=1 SV=1
Length = 310
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 26/149 (17%)
Query: 36 KVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNAL 95
+V VS + GF++AE +++ETLT + Y+ ++ A SY R++ L D+ L
Sbjct: 38 QVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 97
Query: 96 NDVSSGQGFPGASALNRNCMLDSGVLKEIAGFVRHGCEIPFAKPIPRSKNAHANSVCCKK 155
++ GF + L A R + A P+ N K
Sbjct: 98 VEM----GF------------NVDTLPAYAK--RSQRMVITAPPV-------TNQPVTPK 132
Query: 156 ENDRGSRSLH-LHIPKWLPAFPDERSYNK 183
G H HIP P FPD +Y K
Sbjct: 133 ALTAGQNRPHPPHIPSHFPEFPDPHTYIK 161
>sp|Q5F489|TAF3_CHICK Transcription initiation factor TFIID subunit 3 OS=Gallus gallus
GN=TAF3 PE=2 SV=1
Length = 930
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 21/143 (14%)
Query: 34 VTKVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTN 93
+ +V+V+QIC+++G+ + + SA + LT V +YLQ L Y + R++ L D+ +
Sbjct: 9 LLRVSVAQICQALGWDSVQVSACDLLTDVLQRYLQGLGRGCHRYCELYGRTDPILDDVGD 68
Query: 94 ALNDVSSGQGFPGASALNRNCMLDSGV-LKEIAGFVRHGCEIPFAKPIPRSKNAHANSVC 152
A + GV L E+ ++ + + FA IP + N +
Sbjct: 69 AFKLM--------------------GVNLHELEDYIHNIEPVTFAHQIPSFPVSKNNVLQ 108
Query: 153 CKKENDRGSRSLHLHIPKWLPAF 175
+ + + +IP ++P
Sbjct: 109 FPQPGSKDAEERKEYIPDYMPPI 131
>sp|Q12297|TAF3_YEAST Transcription initiation factor TFIID subunit 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF3 PE=1
SV=1
Length = 353
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 26 TPSEFAFTVTKVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSE 85
T ++F F + ++++ Q+ ++ GF A S ++ +T + AK+L LAS +S + +
Sbjct: 3 TNNDFYFALLRISILQLLKAQGFDRARPSLVDVMTDLYAKFLSLLASEVSSIAQARCDQD 62
Query: 86 SN--LVDLTNALNDV 98
L D+T AL ++
Sbjct: 63 DTIALQDITLALENL 77
>sp|Q6P0T2|TAF8_DANRE Transcription initiation factor TFIID subunit 8 OS=Danio rerio
GN=taf8 PE=1 SV=1
Length = 308
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 55/147 (37%), Gaps = 26/147 (17%)
Query: 36 KVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNAL 95
+V VS + GF +AE + +ETLT + Y+ ++ A + RS L D+ L
Sbjct: 40 QVVVSALLTECGFDSAEKAVVETLTEMMQSYITEVGRCAKANCEHTARSTPTLSDVVITL 99
Query: 96 NDVSSGQGFPGASALNRNCMLDSGVLKEIAGFVRHGCEIPFAKPIPRSKNAHANSVCCKK 155
++ GF N K V I A +P+S A
Sbjct: 100 VEM----GF--------NVDTLPVYAKRSQRMVITAPPITNAPVVPKSLTA--------- 138
Query: 156 ENDRGSRSLH-LHIPKWLPAFPDERSY 181
G + H HIP P FPD +Y
Sbjct: 139 ----GQKRTHPAHIPSHFPDFPDPHTY 161
>sp|A6ZMA9|ERB1_YEAS7 Ribosome biogenesis protein ERB1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=ERB1 PE=3 SV=1
Length = 807
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 164 LHLHIPKWLPAFPDERSYNKECQGPVCNRSEKLWENSEFPEGER 207
+HL PK LP +E SYN + + ++ WEN+E+ E ER
Sbjct: 322 MHLRAPK-LPPPTNEESYNPPEEYLLSPEEKEAWENTEYSERER 364
>sp|Q04660|ERB1_YEAST Ribosome biogenesis protein ERB1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERB1 PE=1 SV=1
Length = 807
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 164 LHLHIPKWLPAFPDERSYNKECQGPVCNRSEKLWENSEFPEGER 207
+HL PK LP +E SYN + + ++ WEN+E+ E ER
Sbjct: 322 MHLRAPK-LPPPTNEESYNPPEEYLLSPEEKEAWENTEYSERER 364
>sp|P14019|DCOR_CRIGR Ornithine decarboxylase OS=Cricetulus griseus GN=ODC1 PE=2 SV=3
Length = 455
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 165 HLHIPKWLP--AFPDERSYNKECQGPVCNRSEKLWENSEFPE 204
H H+ LP PDE+ Y+ GP C+ +++ E PE
Sbjct: 327 HAHVKPLLPKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPE 368
>sp|Q80WQ8|M18BP_MOUSE Mis18-binding protein 1 OS=Mus musculus GN=Mis18bp1 PE=1 SV=1
Length = 998
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 31/149 (20%)
Query: 27 PSEFAFTVTKVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSES 86
PS+ T ++ VSQ CRS ++E + +E + +RA + +R
Sbjct: 615 PSKLQKTENQIGVSQYCRSSSHLSSEENEVEIKS----------RTRARNTKERLNRERE 664
Query: 87 NLVDLTNALNDVSSGQGFPGASALNRNCMLDSGVLKEIAGFVRHGCEIPFAKPIPRSKNA 146
N +T + +S +G R C I C I +P +K +
Sbjct: 665 NTNHITKDILLISETEG-------ERACY--------ITPKRPRSCYITPKRPRSSAKES 709
Query: 147 HANSVCCK------KENDRGSRSLHLHIP 169
H S K K +DR SR L H+P
Sbjct: 710 HYKSAVSKDFLTEGKASDRTSRQLLDHLP 738
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,626,827
Number of Sequences: 539616
Number of extensions: 4714849
Number of successful extensions: 10009
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9986
Number of HSP's gapped (non-prelim): 26
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)