Query 023473
Match_columns 281
No_of_seqs 154 out of 296
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 07:23:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_D Histone H4-VI; histone- 98.8 6.9E-09 2.3E-13 82.8 7.9 71 34-104 30-101 (103)
2 2yfw_B Histone H4, H4; cell cy 98.8 7.4E-09 2.5E-13 82.7 7.7 71 34-104 30-101 (103)
3 1taf_A TFIID TBP associated fa 98.8 3.2E-08 1.1E-12 74.0 8.7 61 37-97 5-65 (68)
4 1id3_B Histone H4; nucleosome 98.6 8.4E-08 2.9E-12 76.6 8.2 67 34-100 29-95 (102)
5 2hue_C Histone H4; mini beta s 98.6 5.1E-08 1.8E-12 75.1 6.5 65 36-100 13-77 (84)
6 1ku5_A HPHA, archaeal histon; 98.4 6.2E-07 2.1E-11 66.5 7.6 60 37-96 10-69 (70)
7 3b0b_B CENP-S, centromere prot 98.4 4.3E-07 1.5E-11 73.4 6.6 68 32-99 18-88 (107)
8 3v9r_A MHF1, uncharacterized p 98.4 8.8E-07 3E-11 69.5 8.0 68 31-98 10-80 (90)
9 4dra_A Centromere protein S; D 98.4 5.6E-07 1.9E-11 73.3 6.8 76 23-98 17-95 (113)
10 1taf_B TFIID TBP associated fa 98.3 2.1E-06 7.2E-11 64.4 8.1 60 37-96 10-69 (70)
11 3vh5_A CENP-S; histone fold, c 98.3 1.2E-06 4.2E-11 73.6 7.5 68 32-99 18-88 (140)
12 3b0c_T CENP-T, centromere prot 98.2 2.3E-06 7.8E-11 69.3 7.4 64 37-100 11-74 (111)
13 2ly8_A Budding yeast chaperone 97.9 2.5E-05 8.5E-10 64.3 7.2 78 27-104 39-119 (121)
14 1b67_A Protein (histone HMFA); 97.9 4.5E-05 1.5E-09 55.8 7.6 60 39-98 8-67 (68)
15 2l5a_A Histone H3-like centrom 97.7 3.3E-05 1.1E-09 69.8 4.6 69 31-99 155-227 (235)
16 1n1j_A NF-YB; histone-like PAI 97.7 0.00033 1.1E-08 54.4 9.7 63 38-100 13-77 (93)
17 1f1e_A Histone fold protein; a 97.6 0.00014 4.6E-09 62.1 7.6 62 37-98 86-147 (154)
18 1f1e_A Histone fold protein; a 97.6 0.00014 4.9E-09 61.9 7.5 64 37-100 8-72 (154)
19 2byk_B Chrac-14; nucleosome sl 97.4 0.0012 4.2E-08 54.4 10.1 63 38-100 14-78 (128)
20 1jfi_B DR1 protein, transcript 97.4 0.00095 3.3E-08 58.2 9.7 63 38-100 20-83 (179)
21 3b0c_W CENP-W, centromere prot 97.2 0.0014 4.8E-08 49.1 8.0 50 49-98 21-70 (76)
22 3nqj_A Histone H3-like centrom 96.6 0.016 5.6E-07 44.5 9.4 52 49-100 26-77 (82)
23 2hue_B Histone H3; mini beta s 96.6 0.011 3.6E-07 45.0 8.1 53 47-99 22-74 (77)
24 3nqu_A Histone H3-like centrom 96.5 0.01 3.6E-07 49.8 8.5 53 49-101 84-136 (140)
25 3r45_A Histone H3-like centrom 96.3 0.011 3.6E-07 50.6 7.3 64 36-99 84-150 (156)
26 2yfv_A Histone H3-like centrom 96.2 0.013 4.6E-07 46.5 7.0 48 49-96 51-98 (100)
27 1n1j_B NF-YC; histone-like PAI 95.8 0.023 7.8E-07 44.4 6.8 62 38-99 24-86 (97)
28 1tzy_C Histone H3; histone-fol 95.7 0.034 1.2E-06 46.4 7.9 53 47-99 81-133 (136)
29 2nqb_C Histone H2A; nucleosome 94.8 0.081 2.8E-06 43.2 7.3 58 40-97 30-88 (123)
30 2nqb_D Histone H2B; nucleosome 94.6 0.13 4.4E-06 42.3 7.9 67 24-98 32-99 (123)
31 2f8n_G Core histone macro-H2A. 94.5 0.1 3.5E-06 42.5 7.2 58 40-97 29-87 (120)
32 1tzy_A Histone H2A-IV; histone 94.5 0.1 3.5E-06 43.0 7.3 67 31-97 20-90 (129)
33 1tzy_B Histone H2B; histone-fo 94.4 0.14 4.8E-06 42.2 7.8 67 24-98 35-102 (126)
34 1f66_C Histone H2A.Z; nucleoso 94.4 0.11 3.8E-06 42.7 7.1 68 30-97 21-93 (128)
35 2f8n_K Histone H2A type 1; nuc 94.3 0.12 4E-06 43.8 7.2 68 30-97 38-109 (149)
36 1id3_C Histone H2A.1; nucleoso 94.0 0.12 3.9E-06 42.8 6.6 58 40-97 32-90 (131)
37 1jfi_A Transcription regulator 93.6 0.088 3E-06 41.1 4.8 60 39-98 17-77 (98)
38 4g92_C HAPE; transcription fac 92.0 0.35 1.2E-05 39.0 6.6 53 46-98 55-107 (119)
39 2jss_A Chimera of histone H2B. 92.0 0.76 2.6E-05 39.9 9.2 59 40-98 10-69 (192)
40 2jss_A Chimera of histone H2B. 91.1 0.66 2.3E-05 40.3 7.7 58 40-97 112-171 (192)
41 1h3o_B Transcription initiatio 89.1 1.4 4.9E-05 33.1 7.1 64 32-98 8-71 (76)
42 2l5a_A Histone H3-like centrom 87.6 1.2 4.2E-05 40.1 6.9 50 50-99 36-85 (235)
43 2byk_A Chrac-16; nucleosome sl 83.8 1.9 6.4E-05 35.8 5.8 51 49-99 36-87 (140)
44 4dra_E Centromere protein X; D 80.1 11 0.00039 28.7 8.5 62 36-98 15-80 (84)
45 3uk6_A RUVB-like 2; hexameric 73.7 16 0.00056 32.4 9.2 61 37-98 266-330 (368)
46 3b0b_C CENP-X, centromere prot 73.0 12 0.00041 28.3 6.8 60 38-98 13-76 (81)
47 2c9o_A RUVB-like 1; hexameric 65.1 35 0.0012 32.1 9.9 62 36-98 372-437 (456)
48 3k1j_A LON protease, ATP-depen 62.6 42 0.0014 32.9 10.3 52 47-98 311-375 (604)
49 1g8p_A Magnesium-chelatase 38 60.4 50 0.0017 28.8 9.5 49 50-98 267-322 (350)
50 3kw6_A 26S protease regulatory 53.5 11 0.00038 26.9 3.3 46 53-98 24-73 (78)
51 1bh9_A TAFII18; histone fold, 52.5 43 0.0015 22.4 5.9 40 37-76 4-44 (45)
52 3bos_A Putative DNA replicatio 51.0 53 0.0018 26.5 7.5 58 37-96 181-241 (242)
53 2r44_A Uncharacterized protein 50.5 37 0.0013 29.8 7.0 48 51-98 227-297 (331)
54 1h3o_A Transcription initiatio 47.1 36 0.0012 25.4 5.3 48 33-80 6-53 (75)
55 1bh9_B TAFII28; histone fold, 47.1 71 0.0024 24.3 7.1 66 30-99 17-83 (89)
56 2v1u_A Cell division control p 46.2 86 0.0029 27.3 8.6 50 49-98 221-276 (387)
57 1in4_A RUVB, holliday junction 43.6 89 0.003 27.8 8.5 66 35-101 185-253 (334)
58 2ly8_A Budding yeast chaperone 42.5 59 0.002 26.3 6.3 67 50-134 26-98 (121)
59 3vlf_B 26S protease regulatory 42.5 23 0.0008 26.0 3.7 44 56-99 25-72 (88)
60 2chg_A Replication factor C sm 41.1 77 0.0026 24.8 6.9 58 36-96 167-224 (226)
61 1fnn_A CDC6P, cell division co 37.7 1.6E+02 0.0054 25.8 9.0 50 50-99 214-275 (389)
62 2qby_B CDC6 homolog 3, cell di 35.5 1E+02 0.0034 27.2 7.4 48 49-98 217-270 (384)
63 3h4m_A Proteasome-activating n 33.4 71 0.0024 27.1 5.8 56 41-98 199-258 (285)
64 2qby_A CDC6 homolog 1, cell di 31.4 2.5E+02 0.0087 24.2 9.5 50 49-98 217-272 (386)
65 2qz4_A Paraplegin; AAA+, SPG7, 30.7 34 0.0012 28.5 3.3 61 38-98 185-249 (262)
66 2dzn_B 26S protease regulatory 29.8 50 0.0017 23.7 3.6 32 67-98 37-68 (82)
67 3i2w_A Syndapin, LD46328P; EFC 27.5 2.7E+02 0.0093 24.0 8.7 75 37-132 197-276 (290)
68 1u5t_A Appears to BE functiona 26.4 1.8E+02 0.0062 25.8 7.3 65 35-104 60-147 (233)
69 3aji_B S6C, proteasome (prosom 24.6 61 0.0021 23.0 3.3 34 66-99 39-72 (83)
70 2krk_A 26S protease regulatory 24.3 69 0.0024 23.5 3.6 32 67-98 50-81 (86)
71 1w5s_A Origin recognition comp 23.0 3.2E+02 0.011 24.0 8.5 49 50-98 236-293 (412)
72 1u9l_A Transcription elongatio 22.9 86 0.0029 22.6 3.7 42 37-78 16-63 (70)
73 1e50_B Core-binding factor CBF 22.3 25 0.00086 29.0 0.8 25 217-252 82-106 (134)
74 3pfi_A Holliday junction ATP-d 21.7 2E+02 0.007 24.9 6.8 63 37-100 191-256 (338)
75 1hqc_A RUVB; extended AAA-ATPa 21.5 1.6E+02 0.0053 25.3 5.9 64 36-100 174-240 (324)
No 1
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.85 E-value=6.9e-09 Score=82.84 Aligned_cols=71 Identities=25% Similarity=0.353 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC-CCC
Q 023473 34 VTKVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSSG-QGF 104 (281)
Q Consensus 34 lLr~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi~-~gF 104 (281)
+-...|..|++..|+..++..|.+.|+++++.|+.+|++.|..||+|++|+..+..||.+||+.+|.. .||
T Consensus 30 ip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lYGf 101 (103)
T 1tzy_D 30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF 101 (103)
T ss_dssp SCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEESC
T ss_pred CCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCcCC
Confidence 45568899999999999999999999999999999999999999999999999999999999999753 555
No 2
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.83 E-value=7.4e-09 Score=82.71 Aligned_cols=71 Identities=25% Similarity=0.377 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC-CCC
Q 023473 34 VTKVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSSG-QGF 104 (281)
Q Consensus 34 lLr~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi~-~gF 104 (281)
+-...|..|++..|+..++..|.+.|+++++.|+.+|++.|..||+|++|+..++.||.+||+.+|.. .||
T Consensus 30 ip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lYGf 101 (103)
T 2yfw_B 30 ITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGF 101 (103)
T ss_dssp CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCcCC
Confidence 45668889999999999999999999999999999999999999999999999999999999999742 454
No 3
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.76 E-value=3.2e-08 Score=73.95 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 023473 37 VAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALND 97 (281)
Q Consensus 37 ~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~d 97 (281)
++|.+||+++|-+..++.+...|.+++.+|..+|++.|..||+||||...+..||.+|...
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999999999999875
No 4
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.64 E-value=8.4e-08 Score=76.63 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 023473 34 VTKVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSS 100 (281)
Q Consensus 34 lLr~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi 100 (281)
+-..+|..|++..|...++..|.+.|.+++..||.+|++.|..||+|++|...+..||.+||+.+|-
T Consensus 29 ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~ 95 (102)
T 1id3_B 29 ITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 95 (102)
T ss_dssp SCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 4455788888999999999999999999999999999999999999999999999999999999863
No 5
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.63 E-value=5.1e-08 Score=75.08 Aligned_cols=65 Identities=23% Similarity=0.302 Sum_probs=61.2
Q ss_pred HHHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 023473 36 KVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSS 100 (281)
Q Consensus 36 r~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi 100 (281)
..+|..|++..|-..++..|.+.|.+++..||.++++.|..||+|++|...+..||.+||+.+|.
T Consensus 13 ~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 13 KPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp HHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred HHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 34678889999999999999999999999999999999999999999999999999999999863
No 6
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.43 E-value=6.2e-07 Score=66.45 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023473 37 VAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALN 96 (281)
Q Consensus 37 ~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~ 96 (281)
..|..|+++.|=..+++.|.+.|.+++..|+..|.+.|..||+|+||...+..||.+|++
T Consensus 10 a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 10 APVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 467788888999999999999999999999999999999999999999999999999985
No 7
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.41 E-value=4.3e-07 Score=73.36 Aligned_cols=68 Identities=10% Similarity=0.133 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHcCc---CccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 023473 32 FTVTKVAVSQICRSVGF---KAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVS 99 (281)
Q Consensus 32 r~lLr~sVaqIL~~~GF---dsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmG 99 (281)
.+-|.-+|.+||++.|= ..+++.++..|++++.+|+..|+..+..||.||||...+..||.+|++...
T Consensus 18 Kaal~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~ 88 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSN 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCH
Confidence 45666779999999997 689999999999999999999999999999999999999999999999863
No 8
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=8.8e-07 Score=69.48 Aligned_cols=68 Identities=18% Similarity=0.061 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHcCc---CccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 31 AFTVTKVAVSQICRSVGF---KAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 31 ar~lLr~sVaqIL~~~GF---dsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
..+-|.-+|++||++..= -.+++.++..|++++.+|+.+|+..+..||.||||...+..||.++++..
T Consensus 10 LKaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 10 LKARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 456788899999998832 13999999999999999999999999999999999999999999998874
No 9
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.38 E-value=5.6e-07 Score=73.29 Aligned_cols=76 Identities=11% Similarity=0.140 Sum_probs=68.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHcCcCc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 23 GEETPSEFAFTVTKVAVSQICRSVGFKA---AESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 23 ~~~s~defar~lLr~sVaqIL~~~GFds---a~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
-..+..+-..+-|.-+|+.||++.|=+. +++.++..|++++.+|+.+|+..+..||.||||..++..||.++++..
T Consensus 17 ~~~~~~~rLKaal~y~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~ 95 (113)
T 4dra_A 17 QRFSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS 95 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC
Confidence 3445556667888999999999999887 999999999999999999999999999999999999999999999886
No 10
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.32 E-value=2.1e-06 Score=64.41 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023473 37 VAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALN 96 (281)
Q Consensus 37 ~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~ 96 (281)
..|-.|.+++|.+..+..|...|++-++.++.+|++.|..||.|++|+..+..||.+||+
T Consensus 10 ~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 10 ESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 467889999999999999999999999999999999999999999999999999999985
No 11
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.32 E-value=1.2e-06 Score=73.65 Aligned_cols=68 Identities=9% Similarity=0.106 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHcCcCc---cChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 023473 32 FTVTKVAVSQICRSVGFKA---AESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVS 99 (281)
Q Consensus 32 r~lLr~sVaqIL~~~GFds---a~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmG 99 (281)
.+-|.-+|++||++.|=+. +++.++..|++++.+|+.+|+..+..||.||||..++..||.++++...
T Consensus 18 KaAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~ 88 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSN 88 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCH
Confidence 4667788999999887654 9999999999999999999999999999999999999999999999863
No 12
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.25 E-value=2.3e-06 Score=69.27 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 023473 37 VAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSS 100 (281)
Q Consensus 37 ~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi 100 (281)
-+|..|.+..|=..++..|.+.|.+++..|+..+++.+..||+||||...+..||.+||+..|-
T Consensus 11 a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 11 SLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp HHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 4566677777889999999999999999999999999999999999999999999999999974
No 13
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=2.5e-05 Score=64.30 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHHHH--HHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC-CC
Q 023473 27 PSEFAFTVTKVAVSQIC--RSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSSG-QG 103 (281)
Q Consensus 27 ~defar~lLr~sVaqIL--~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi~-~g 103 (281)
.++|.-.++..+-.-.+ .-.|-..++..+-+.+.+++..|+++|.+.+-.|++||+|-..+..||.+||+..|.- .|
T Consensus 39 sEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~lyg 118 (121)
T 2ly8_A 39 SEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYG 118 (121)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGGG
T ss_pred HHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCCC
Confidence 34444455554322222 4568899999999999999999999999999999999999999999999999999853 44
Q ss_pred C
Q 023473 104 F 104 (281)
Q Consensus 104 F 104 (281)
|
T Consensus 119 f 119 (121)
T 2ly8_A 119 F 119 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 14
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=97.88 E-value=4.5e-05 Score=55.78 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=54.4
Q ss_pred HHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 39 VSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 39 VaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
|..|+++.|=..++..|++.|.+.++.||..|...|..+|.|++|...+..||..|++.+
T Consensus 8 v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 8 IGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 445555557788999999999999999999999999999999999999999999999876
No 15
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=3.3e-05 Score=69.85 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=61.2
Q ss_pred HHHHHHHHHH----HHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 023473 31 AFTVTKVAVS----QICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVS 99 (281)
Q Consensus 31 ar~lLr~sVa----qIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmG 99 (281)
...+|+..|- .|++..|-..++..|-+.+.+++..|+++|++.|-.||+||+|...+..||.+||..+|
T Consensus 155 ~~~vLrD~i~i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 155 YTSVLRDIIDISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp HHHHHHHHHHHTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 3455554443 55688899999999999999999999999999999999999999999999999999986
No 16
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.65 E-value=0.00033 Score=54.35 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=56.2
Q ss_pred HHHHHHHHcCc--CccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 023473 38 AVSQICRSVGF--KAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSS 100 (281)
Q Consensus 38 sVaqIL~~~GF--dsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi 100 (281)
.|..|+++.|= ..++..|++.|++.+..||..|+..|..+|.+++|-..+..||..|++.+|.
T Consensus 13 ~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F 77 (93)
T 1n1j_A 13 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGF 77 (93)
T ss_dssp HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 45566666643 6799999999999999999999999999999999999999999999999863
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.61 E-value=0.00014 Score=62.11 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 37 VAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 37 ~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
..|..|++..|=..++..|-+.|.+++..|+..|++.|..||+|++|...+..||.+||+..
T Consensus 86 a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 86 ATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 45777888889999999999999999999999999999999999999999999999999986
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.60 E-value=0.00014 Score=61.94 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=60.2
Q ss_pred HHHHHHHHHc-CcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 023473 37 VAVSQICRSV-GFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSS 100 (281)
Q Consensus 37 ~sVaqIL~~~-GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi 100 (281)
..|..|++.. |=..++..|-+.|.+++..|+..|++.|..||+|+||...+..||..||..+|.
T Consensus 8 a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~ 72 (154)
T 1f1e_A 8 AAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMV 72 (154)
T ss_dssp HHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTC
T ss_pred cHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccc
Confidence 4577788888 999999999999999999999999999999999999999999999999999964
No 19
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.37 E-value=0.0012 Score=54.38 Aligned_cols=63 Identities=10% Similarity=0.168 Sum_probs=56.5
Q ss_pred HHHHHHHHcC--cCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 023473 38 AVSQICRSVG--FKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSS 100 (281)
Q Consensus 38 sVaqIL~~~G--Fdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi 100 (281)
.|..|++.++ -..++..|...|+..+..||..|+..|..+|.+.+|-..+..||..||..++.
T Consensus 14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f 78 (128)
T 2byk_B 14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDF 78 (128)
T ss_dssp HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 3556666544 57899999999999999999999999999999999999999999999999974
No 20
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.35 E-value=0.00095 Score=58.18 Aligned_cols=63 Identities=11% Similarity=0.168 Sum_probs=55.8
Q ss_pred HHHHHHHHcC-cCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 023473 38 AVSQICRSVG-FKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSS 100 (281)
Q Consensus 38 sVaqIL~~~G-Fdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi 100 (281)
.|..|+++++ =..++..|.+.|++.+..||..|+..|...|.+.+|-..+..||..||.++|.
T Consensus 20 ~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF 83 (179)
T 1jfi_B 20 AINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGF 83 (179)
T ss_dssp HHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcCh
Confidence 4555555554 26899999999999999999999999999999999999999999999999974
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.21 E-value=0.0014 Score=49.08 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=48.0
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 49 KAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 49 dsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
..++..|.+.|.+.+..|+..|+..|...|.+++|...+..||..|++++
T Consensus 21 ~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 21 LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999986
No 22
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=96.58 E-value=0.016 Score=44.47 Aligned_cols=52 Identities=21% Similarity=0.011 Sum_probs=48.5
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 023473 49 KAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSS 100 (281)
Q Consensus 49 dsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi 100 (281)
...+++|++.|.+..+.|+..|.+.+...|.||+|....+.|+.+|.+--|.
T Consensus 26 ~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~ 77 (82)
T 3nqj_A 26 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 77 (82)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHccc
Confidence 4789999999999999999999999999999999999999999999887664
No 23
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=96.56 E-value=0.011 Score=45.01 Aligned_cols=53 Identities=21% Similarity=0.033 Sum_probs=49.0
Q ss_pred CcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 023473 47 GFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVS 99 (281)
Q Consensus 47 GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmG 99 (281)
|=...+.+|++.|.+..+.|+..|.+.+...|.||+|....+.|+.+|.+--|
T Consensus 22 ~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 22 TDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp SSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 44678999999999999999999999999999999999999999999987654
No 24
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=96.50 E-value=0.01 Score=49.77 Aligned_cols=53 Identities=21% Similarity=0.006 Sum_probs=48.7
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC
Q 023473 49 KAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSSG 101 (281)
Q Consensus 49 dsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi~ 101 (281)
...+.+|++.|.+..+.||..|.+.+...|.||+|....+.|+.+|..--|+.
T Consensus 84 ~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 84 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 47899999999999999999999999999999999999999999999877753
No 25
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=96.27 E-value=0.011 Score=50.57 Aligned_cols=64 Identities=20% Similarity=0.054 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcC---cCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 023473 36 KVAVSQICRSVG---FKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVS 99 (281)
Q Consensus 36 r~sVaqIL~~~G---Fdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmG 99 (281)
.+.|-.|.+... =...+.+|++.|.+..+.||..|.+.+...|.||+|....+.|+.+|..--|
T Consensus 84 ~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg 150 (156)
T 3r45_A 84 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 150 (156)
T ss_dssp HHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcc
Confidence 344555554422 2378999999999999999999999999999999999999999999987654
No 26
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=96.17 E-value=0.013 Score=46.46 Aligned_cols=48 Identities=21% Similarity=0.094 Sum_probs=45.3
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023473 49 KAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALN 96 (281)
Q Consensus 49 dsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~ 96 (281)
...+.+|++.|.+..+.||..|...+...|.||+|....+-|+.+|.+
T Consensus 51 ~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 51 LRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999864
No 27
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=95.80 E-value=0.023 Score=44.36 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=56.6
Q ss_pred HHHHHHHHcCc-CccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 023473 38 AVSQICRSVGF-KAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVS 99 (281)
Q Consensus 38 sVaqIL~~~GF-dsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmG 99 (281)
-|..|++..+. ..++..|...|+..++.|+.+|+..|...|...+|...+..||.+|.....
T Consensus 24 rIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e 86 (97)
T 1n1j_B 24 RIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFD 86 (97)
T ss_dssp HHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred HHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCc
Confidence 36778888877 679999999999999999999999999999999999999999999998864
No 28
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=95.72 E-value=0.034 Score=46.39 Aligned_cols=53 Identities=21% Similarity=0.028 Sum_probs=49.1
Q ss_pred CcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 023473 47 GFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVS 99 (281)
Q Consensus 47 GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmG 99 (281)
|=...+.+|++.|.+..+.||..|...+...|.||+|....+-|+.+|..--|
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 44688999999999999999999999999999999999999999999987654
No 29
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=94.81 E-value=0.081 Score=43.24 Aligned_cols=58 Identities=12% Similarity=0.025 Sum_probs=53.1
Q ss_pred HHHHHHc-CcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 023473 40 SQICRSV-GFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALND 97 (281)
Q Consensus 40 aqIL~~~-GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~d 97 (281)
-.+|+.. +...+...|-..|+.+++.+..+|...|-.+|.+++|...++.||.+|..+
T Consensus 30 ~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 30 HRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 3446664 888999999999999999999999999999999999999999999999886
No 30
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=94.57 E-value=0.13 Score=42.29 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=56.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHcCcC-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 24 EETPSEFAFTVTKVAVSQICRSVGFK-AAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 24 ~~s~defar~lLr~sVaqIL~~~GFd-sa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
..+-.-|+.++|+ +++-+ +++..|++.|..++...++.|+..|...|.+++|...+..||..|.+.+
T Consensus 32 ~esy~~YIyKVLK--------QVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 32 KESYAIYIYTVLK--------QVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp CCCSHHHHHHHHH--------HHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH--------HhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 3455555555554 44555 7899999999999999999999999999999999999999999999887
No 31
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=94.52 E-value=0.1 Score=42.50 Aligned_cols=58 Identities=7% Similarity=-0.055 Sum_probs=52.9
Q ss_pred HHHHHHcC-cCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 023473 40 SQICRSVG-FKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALND 97 (281)
Q Consensus 40 aqIL~~~G-Fdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~d 97 (281)
..+|+..+ ...+...|-..|+.+++.+..+|...|-.+|.+++|+..++.||.+|..+
T Consensus 29 ~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 29 LRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 34577777 57899999999999999999999999999999999999999999999885
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=94.51 E-value=0.1 Score=42.97 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=56.9
Q ss_pred HHHHHHHHH---HHHHHH-cCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 023473 31 AFTVTKVAV---SQICRS-VGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALND 97 (281)
Q Consensus 31 ar~lLr~sV---aqIL~~-~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~d 97 (281)
.++-|+--| -.+|+. .+...+...|-..|+.+++.+..+|...|-.+|.+++|...++.||.+|..+
T Consensus 20 ~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 20 SRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 444444333 344666 4888999999999999999999999999999999999999999999999886
No 33
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=94.44 E-value=0.14 Score=42.24 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=56.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHcCcC-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 24 EETPSEFAFTVTKVAVSQICRSVGFK-AAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 24 ~~s~defar~lLr~sVaqIL~~~GFd-sa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
..+-.-|+.++| ++++-| +++..|++.|..++...++.|+..|...|..+.|...+..||..|.+.+
T Consensus 35 ~esy~~YIyKVL--------KQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 35 KESYSIYVYKVL--------KQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp CCCCHHHHHHHH--------HHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cccHHHHHHHHH--------HHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 344455555544 455555 7999999999999999999999999999999999999999999999887
No 34
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=94.36 E-value=0.11 Score=42.74 Aligned_cols=68 Identities=10% Similarity=-0.063 Sum_probs=58.2
Q ss_pred HHHHHHHHHH---HHHHHHcCc--CccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 023473 30 FAFTVTKVAV---SQICRSVGF--KAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALND 97 (281)
Q Consensus 30 far~lLr~sV---aqIL~~~GF--dsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~d 97 (281)
-.++-|+--| ..+|+..++ ..+...|--.|+.+++.+..+|...|-.+|..++|+..++.||.+|..+
T Consensus 21 S~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 21 SQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred cccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 3455554444 456888885 3899999999999999999999999999999999999999999999987
No 35
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=94.27 E-value=0.12 Score=43.77 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=57.7
Q ss_pred HHHHHHHHH---HHHHHHHc-CcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 023473 30 FAFTVTKVA---VSQICRSV-GFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALND 97 (281)
Q Consensus 30 far~lLr~s---VaqIL~~~-GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~d 97 (281)
-.++-|+-- |..+|+.. +...+...|-..|+.+++.+..+|...|-.+|..++|...++.||.+|...
T Consensus 38 S~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 38 SSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 344445433 34456664 888999999999999999999999999999999999999999999999986
No 36
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=94.01 E-value=0.12 Score=42.79 Aligned_cols=58 Identities=16% Similarity=0.046 Sum_probs=52.8
Q ss_pred HHHHHH-cCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 023473 40 SQICRS-VGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALND 97 (281)
Q Consensus 40 aqIL~~-~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~d 97 (281)
..+|+. .+...+...|-..|+.+++.+..+|...|-.+|.+++|+..++.||.+|..+
T Consensus 32 ~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 32 HRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp HHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 445555 4788999999999999999999999999999999999999999999999986
No 37
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=93.57 E-value=0.088 Score=41.15 Aligned_cols=60 Identities=8% Similarity=0.107 Sum_probs=50.4
Q ss_pred HHHHHHHcCc-CccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 39 VSQICRSVGF-KAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 39 VaqIL~~~GF-dsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
|-.|++..+. ..++..|.-.|+..++-|+.+|...|..+|...+|...+..||.+|.+..
T Consensus 17 IkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~ 77 (98)
T 1jfi_A 17 IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELE 77 (98)
T ss_dssp HHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--
T ss_pred HHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcC
Confidence 5677777766 78999999999999999999999999999999999999999999888764
No 38
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=92.05 E-value=0.35 Score=38.97 Aligned_cols=53 Identities=17% Similarity=0.116 Sum_probs=49.6
Q ss_pred cCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 46 VGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 46 ~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
-....++..|...++..++-||..|...|...|...+|...+..||..|+...
T Consensus 55 ~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~ 107 (119)
T 4g92_C 55 PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKS 107 (119)
T ss_dssp TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcC
Confidence 44668999999999999999999999999999999999999999999999875
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=92.05 E-value=0.76 Score=39.85 Aligned_cols=59 Identities=8% Similarity=0.174 Sum_probs=51.4
Q ss_pred HHHHHHcCc-CccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 40 SQICRSVGF-KAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 40 aqIL~~~GF-dsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
-.+|++++- .+++..|++.|..++.+.+..|+..|...+..+.|...+..||..|.+-+
T Consensus 10 ~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 10 YKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 334444443 55999999999999999999999999999999999999999999999876
No 40
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=91.07 E-value=0.66 Score=40.25 Aligned_cols=58 Identities=14% Similarity=-0.025 Sum_probs=51.6
Q ss_pred HHHHHHc-Cc-CccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 023473 40 SQICRSV-GF-KAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALND 97 (281)
Q Consensus 40 aqIL~~~-GF-dsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~d 97 (281)
..+|+.. +. ..+...|-..|+.+++.+..+|...|-.+|.+++|...++.|+.+|...
T Consensus 112 ~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 112 KRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp HHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred HHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 3456665 44 4899999999999999999999999999999999999999999999885
No 41
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=89.10 E-value=1.4 Score=33.10 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 32 FTVTKVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 32 r~lLr~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
..-|+..|-||. +=....+.+-|.|.+|+..|+..+...+.+.|-|-+-....+-||.+.|+..
T Consensus 8 k~~L~~Lv~~id---p~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 8 KKKLQDLVREVD---PNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp HHHHHHHHHHHC---SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 455666666664 4477889999999999999999999999999999888778999999999874
No 42
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=87.59 E-value=1.2 Score=40.13 Aligned_cols=50 Identities=20% Similarity=0.069 Sum_probs=46.9
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 023473 50 AAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVS 99 (281)
Q Consensus 50 sa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmG 99 (281)
..+++|+.+|-+..+.||..|-..+...|.||.|....+-|+.+|.+--|
T Consensus 36 Rfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 36 RWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred eecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 57899999999999999999999999999999999999999999986655
No 43
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=83.78 E-value=1.9 Score=35.82 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=47.9
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCHHHHHHHHHhcC
Q 023473 49 KAAESSALETLTLVAAKYLQQLASRAASYS-HVAHRSESNLVDLTNALNDVS 99 (281)
Q Consensus 49 dsa~~sALetLTdil~~YL~~Lg~sa~~yA-elaGRT~pnl~DV~~AL~dmG 99 (281)
..++..|.-.++..++-||..|...|..+| ...+|...+..||..|+....
T Consensus 36 ~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e 87 (140)
T 2byk_A 36 GLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNK 87 (140)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCc
Confidence 579999999999999999999999999999 999999999999999999763
No 44
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=80.10 E-value=11 Score=28.69 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCcC----ccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 36 KVAVSQICRSVGFK----AAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 36 r~sVaqIL~~~GFd----sa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
...|+.||+ ..|. .++..|+..+++.+.-|+.+-...|...|+.-|.......|++..+-++
T Consensus 15 ~~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 15 KELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp HHHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 345777777 6785 7899999999999999999999999989998888889999998877655
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=73.69 E-value=16 Score=32.39 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCcCccChHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 37 VAVSQICRSVGFKAAESSALETLTLVAA----KYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 37 ~sVaqIL~~~GFdsa~~sALetLTdil~----~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
..+...|...|.. +++.+++.|..... +++..+...+..+|...++...+..||..|+..+
T Consensus 266 ~il~~~~~~~~~~-~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 266 QILRIRCEEEDVE-MSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp HHHHHHHHHTTCC-BCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 3344456666654 78889999988874 7889999999999999999999999999999874
No 46
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=72.97 E-value=12 Score=28.29 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=48.5
Q ss_pred HHHHHHHHcCcC----ccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 38 AVSQICRSVGFK----AAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 38 sVaqIL~~~GFd----sa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
.|+.|++. .|. .++..|+..+++.+.-|+.+-...|..-|+.-|-......|++..+-++
T Consensus 13 lI~ril~~-~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 13 TVERLLRL-HFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp HHHHHHHH-HCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHH-HhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 45556655 565 7899999999999999999998888888877777788888888877665
No 47
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=65.11 E-value=35 Score=32.13 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCcCccChHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 36 KVAVSQICRSVGFKAAESSALETLTLVA----AKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 36 r~sVaqIL~~~GFdsa~~sALetLTdil----~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
...+...|+..|+. +++.+++.+..+. .++...+...|..+|...|+...+..||..|+.-+
T Consensus 372 ~~iL~~~~~~~~~~-~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 372 KQIIKIRAQTEGIN-ISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHHHHHTCC-BCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 33334445556654 7788888888876 46888889999999999999999999999999876
No 48
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=62.59 E-value=42 Score=32.91 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=45.4
Q ss_pred CcCccChHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 47 GFKAAESSALETLTLVA-------------AKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 47 GFdsa~~sALetLTdil-------------~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
..-..++.|++.|.... .+.|..+.+.|..+|...++...+..||..|+...
T Consensus 311 ~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~ 375 (604)
T 3k1j_A 311 KIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMA 375 (604)
T ss_dssp SSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhh
Confidence 45578999999998765 57888999999999999999999999999999764
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=60.43 E-value=50 Score=28.83 Aligned_cols=49 Identities=12% Similarity=0.031 Sum_probs=43.5
Q ss_pred ccChHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 50 AAESSALETLTLVAA-------KYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 50 sa~~sALetLTdil~-------~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
.+++.+++.|.+... +.+..+.+.+..+|.+.||...+..||..|+..+
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 788999999988865 6788899999999999999999999999998875
No 50
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=53.48 E-value=11 Score=26.89 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 53 SSALETLTLVAAKY----LQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 53 ~sALetLTdil~~Y----L~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
..-++.|...+.-| |..|++.|..+|-..++...+..|+..||..+
T Consensus 24 ~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 24 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp TCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 33466666666545 88999999999999999999999999999986
No 51
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=52.50 E-value=43 Score=22.41 Aligned_cols=40 Identities=10% Similarity=0.227 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCc-CccChHHHHHHHHHHHHHHHHHHHHHHH
Q 023473 37 VAVSQICRSVGF-KAAESSALETLTLVAAKYLQQLASRAAS 76 (281)
Q Consensus 37 ~sVaqIL~~~GF-dsa~~sALetLTdil~~YL~~Lg~sa~~ 76 (281)
.-|.+++-..|= ..-.+.+...|.||+..||.++...|.+
T Consensus 4 ~ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 4 KELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346677777663 3455688999999999999999988754
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=51.01 E-value=53 Score=26.53 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCcCccChHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023473 37 VAVSQICRSVGFKAAESSALETLTLVAA---KYLQQLASRAASYSHVAHRSESNLVDLTNALN 96 (281)
Q Consensus 37 ~sVaqIL~~~GFdsa~~sALetLTdil~---~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~ 96 (281)
..+.+.+...|+ ..++.+++.|.+... +.+..+...+..+|...++ ..+..||..+|.
T Consensus 181 ~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 181 AALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 344555666676 467888888888765 5566666667777766665 488999988875
No 53
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=50.48 E-value=37 Score=29.81 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=39.6
Q ss_pred cChHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 51 AESSALETLTLVA-----------------------AKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 51 a~~sALetLTdil-----------------------~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
+...+++.+.+++ .|-+..+.+.++.+|.+.||..++..||..|+..+
T Consensus 227 ~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 227 ISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp CCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5667777777765 45566788889999999999999999999999876
No 54
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=47.14 E-value=36 Score=25.40 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023473 33 TVTKVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHV 80 (281)
Q Consensus 33 ~lLr~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAel 80 (281)
..|+.=|..|....|...+++.+.+.+...++++|..|.......|++
T Consensus 6 ~~Lqkri~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~ 53 (75)
T 1h3o_A 6 APLQRRILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQ 53 (75)
T ss_dssp HHHHHHHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 568888899999999999999999999999999999999888777766
No 55
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=47.13 E-value=71 Score=24.28 Aligned_cols=66 Identities=8% Similarity=0.114 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHhcC
Q 023473 30 FAFTVTKVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRS-ESNLVDLTNALNDVS 99 (281)
Q Consensus 30 far~lLr~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT-~pnl~DV~~AL~dmG 99 (281)
|-...++..|.+++. .+++.....+|.-+...|+.+|-..|...++.-+.+ -.-+..|..|++.+.
T Consensus 17 f~k~~vKrl~~~~~~----~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 17 FPKAAIKRLIQSITG----TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCHHHHHHHHHHHHS----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcC----CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 334566677777763 378899999999999999999999999999987765 556788888888874
No 56
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=46.21 E-value=86 Score=27.34 Aligned_cols=50 Identities=10% Similarity=0.073 Sum_probs=43.2
Q ss_pred CccChHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 49 KAAESSALETLTLVAA------KYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 49 dsa~~sALetLTdil~------~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
...++.+++.+.+... +++..+...+..+|+..++...+..||..|+..+
T Consensus 221 ~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 221 GVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp TTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 4567888999988887 7888899999888988888899999999999886
No 57
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=43.62 E-value=89 Score=27.83 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCcCccChHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC
Q 023473 35 TKVAVSQICRSVGFKAAESSALETLTLVA---AKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSSG 101 (281)
Q Consensus 35 Lr~sVaqIL~~~GFdsa~~sALetLTdil---~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi~ 101 (281)
+...+..+++..|.. .+..+++.|.+.. .+.+..+.+.+..||...++...+..++..||..+.++
T Consensus 185 l~~iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 185 LKEIIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp HHHHHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 344444455556664 6677777776653 46677888888999999998889999999999998653
No 58
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=42.53 E-value=59 Score=26.26 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=49.5
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCH----HHHHHHHHhcCCCCCCCCCCcccccccccchhhHH
Q 023473 50 AAESSALETLTLVAAKYLQQLASRAASYSHVAHRS--ESNL----VDLTNALNDVSSGQGFPGASALNRNCMLDSGVLKE 123 (281)
Q Consensus 50 sa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT--~pnl----~DV~~AL~dmGi~~gF~g~s~~~~~~ll~S~~l~e 123 (281)
..+++||..|-+..+.||..|-..+...|.||.|- .-.. ..+..+|+... ...+++
T Consensus 26 Rfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~l------------------~~i~rd 87 (121)
T 2ly8_A 26 RWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSFL------------------ESVIRD 87 (121)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHHH------------------HHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 68999999999999999999999999999999664 2233 33444444442 124778
Q ss_pred HHhhhhhcCCC
Q 023473 124 IAGFVRHGCEI 134 (281)
Q Consensus 124 L~~yv~~~~~i 134 (281)
...|++.....
T Consensus 88 av~yaehA~RK 98 (121)
T 2ly8_A 88 SVTYTEHAKRK 98 (121)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHhcCCC
Confidence 88888776543
No 59
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=42.47 E-value=23 Score=26.03 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=33.3
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 023473 56 LETLTLVAAKY----LQQLASRAASYSHVAHRSESNLVDLTNALNDVS 99 (281)
Q Consensus 56 LetLTdil~~Y----L~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmG 99 (281)
++.|+..+.-| |..|++.|..+|-..++...+..|+..||..+-
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 44444444333 677888888888888888999999999999984
No 60
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=41.14 E-value=77 Score=24.81 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023473 36 KVAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRSESNLVDLTNALN 96 (281)
Q Consensus 36 r~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~ 96 (281)
+..+.+++...|.. .++.+++.|.......+..+-......+..+ ...+..||..++.
T Consensus 167 ~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 167 KKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 34445566666765 6778888888777666666666666666555 4678888887764
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=37.69 E-value=1.6e+02 Score=25.77 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=43.3
Q ss_pred ccChHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 023473 50 AAESSALETLTLVA------------AKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVS 99 (281)
Q Consensus 50 sa~~sALetLTdil------------~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmG 99 (281)
.+++.+++.+.+.. .+++..+...+...|+..++...+..||..|+..+.
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 67889999998888 677888888888888888888999999999998863
No 62
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=35.50 E-value=1e+02 Score=27.16 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=37.5
Q ss_pred CccChHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 49 KAAESSALETLTLVAA------KYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 49 dsa~~sALetLTdil~------~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
..+++.+++.+.+... +++.++...+..+|+ +....+..||..|+.++
T Consensus 217 ~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 217 GTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp TSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 3677889999988876 456667777776766 66789999999999886
No 63
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=33.36 E-value=71 Score=27.12 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=41.4
Q ss_pred HHHHHcCcCccChHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 41 QICRSVGFKAAESSALETLTLVA----AKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 41 qIL~~~GFdsa~~sALetLTdil----~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
..++..+.. ....++.|.... .+-|..+...|..+|...++...+..|+..|+.++
T Consensus 199 ~~~~~~~~~--~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 199 IHTRKMNLA--EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHTTSCBC--TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHhcCCCC--CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 344444433 333455565554 44688899999999999999999999999999987
No 64
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=31.40 E-value=2.5e+02 Score=24.16 Aligned_cols=50 Identities=8% Similarity=0.039 Sum_probs=40.9
Q ss_pred CccChHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 49 KAAESSALETLTLVAA------KYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 49 dsa~~sALetLTdil~------~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
..+.+.+++.+.+... +++..+...+...|+..++...+..||..|+.++
T Consensus 217 ~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 217 GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 4678888888888776 5566788888888887788899999999998886
No 65
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=30.73 E-value=34 Score=28.52 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=36.0
Q ss_pred HHHHHHHHcCcCccChHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 38 AVSQICRSVGFKAAESSALETLTLVA----AKYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 38 sVaqIL~~~GFdsa~~sALetLTdil----~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
.+...++..+.+.....+++.|.... .+.|..+...|..+|...++...+..|+..|+.++
T Consensus 185 il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 185 IFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 33445566676655444455565543 35677888888888877788889999999999887
No 66
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=29.75 E-value=50 Score=23.68 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 67 LQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 67 L~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
|..|++.|...|-..++...+..|+..|+..+
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 45566667777777778889999999999997
No 67
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=27.51 E-value=2.7e+02 Score=24.04 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCcCccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCH----HHHHHHHHhcCCCCCCCCCCccc
Q 023473 37 VAVSQICRSVGFKAAESSALETLTLVAAKYLQQLASRAASYSHVAHRS-ESNL----VDLTNALNDVSSGQGFPGASALN 111 (281)
Q Consensus 37 ~sVaqIL~~~GFdsa~~sALetLTdil~~YL~~Lg~sa~~yAelaGRT-~pnl----~DV~~AL~dmGi~~gF~g~s~~~ 111 (281)
+..+.-.+.. |...-+.+++.|-++-...|..|-.....|+++..-+ .+.+ .++..++..+.
T Consensus 197 v~~~n~~~~~-~~~~~p~~~~~~Q~lee~Ri~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~id------------ 263 (290)
T 3i2w_A 197 IAEITKYNSV-YIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKVQSLPQIYEEFSHTINNAD------------ 263 (290)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCTTHHHHHHHHHHHHHTCC------------
T ss_pred HHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhcC------------
Confidence 3344455666 9999999999999999999999999999999887422 2232 33555555553
Q ss_pred ccccccchhhHHHHhhhhhcC
Q 023473 112 RNCMLDSGVLKEIAGFVRHGC 132 (281)
Q Consensus 112 ~~~ll~S~~l~eL~~yv~~~~ 132 (281)
.-.||..|+....
T Consensus 264 --------~~~Di~~fi~~~~ 276 (290)
T 3i2w_A 264 --------QQKDLKWWSNNHG 276 (290)
T ss_dssp --------HHHHHHHHHHHHS
T ss_pred --------hHHHHHHHHHHcC
Confidence 2578888887754
No 68
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=26.40 E-value=1.8e+02 Score=25.76 Aligned_cols=65 Identities=14% Similarity=0.286 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCcCccChHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcC------------------CCCCCHHHH
Q 023473 35 TKVAVSQICRSVGFKAAESSA-----LETLTLVAAKYLQQLASRAASYSHVAH------------------RSESNLVDL 91 (281)
Q Consensus 35 Lr~sVaqIL~~~GFdsa~~sA-----LetLTdil~~YL~~Lg~sa~~yAelaG------------------RT~pnl~DV 91 (281)
.|.-..+||.+.|-| |-| -+.|. +-.|..+||......|.... +...+..||
T Consensus 60 fR~~F~~mc~siGVD---PLa~s~kg~~~lg--~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi 134 (233)
T 1u5t_A 60 FRSKFMHMCSSIGID---PLSLFDRDKHLFT--VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDL 134 (233)
T ss_dssp HHHHHHHHHHHHTCC---HHHHTTSSGGGTT--HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHH
T ss_pred HHHHHHHHHHHcCCC---CCccCCccccccC--cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHH
Confidence 455567899999998 433 22332 25666666666655554332 247899999
Q ss_pred HHHHHhcCCCCCC
Q 023473 92 TNALNDVSSGQGF 104 (281)
Q Consensus 92 ~~AL~dmGi~~gF 104 (281)
..|...+.+..||
T Consensus 135 ~rAik~L~~L~gf 147 (233)
T 1u5t_A 135 EKSIDMLKSLECF 147 (233)
T ss_dssp HHHHHHHTTTCCC
T ss_pred HHHHHHhhhccCe
Confidence 9999998753344
No 69
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=24.64 E-value=61 Score=23.03 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 023473 66 YLQQLASRAASYSHVAHRSESNLVDLTNALNDVS 99 (281)
Q Consensus 66 YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmG 99 (281)
=|..|++.|...|-..++...+..|+..|+..+-
T Consensus 39 Di~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 39 DINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 3667777888888777788899999999999985
No 70
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=24.30 E-value=69 Score=23.46 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 67 LQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 67 L~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
|..|++.|...|-..++...+..|+..||..+
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 67788888888887778889999999999886
No 71
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=23.03 E-value=3.2e+02 Score=24.00 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=39.4
Q ss_pred ccChHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 023473 50 AAESSALETLTLVAA---------KYLQQLASRAASYSHVAHRSESNLVDLTNALNDV 98 (281)
Q Consensus 50 sa~~sALetLTdil~---------~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dm 98 (281)
..++.+++.+.+... +|+..++..+...|...++...+..|+..++.++
T Consensus 236 ~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 236 VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 467788888887776 5888888888888887788788888998888775
No 72
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=22.88 E-value=86 Score=22.61 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCcCccChHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 023473 37 VAVSQICRSVGFKAAESSALETLTLVA------AKYLQQLASRAASYS 78 (281)
Q Consensus 37 ~sVaqIL~~~GFdsa~~sALetLTdil------~~YL~~Lg~sa~~yA 78 (281)
..+++.|.+.||++++.-|.-...+++ ..-..+|-..|+.+.
T Consensus 16 e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~l 63 (70)
T 1u9l_A 16 EDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNAL 63 (70)
T ss_dssp HHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 467999999999999887765555554 445555555555543
No 73
>1e50_B Core-binding factor CBF-beta; transcription factor, transcription; 2.60A {Homo sapiens} SCOP: b.54.1.1 PDB: 1h9d_B* 1ilf_A 1io4_D 2jhb_A 1cl3_A
Probab=22.29 E-value=25 Score=29.05 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=19.1
Q ss_pred ccCCCccccccceeeeccccCCCCccceeecCCccc
Q 023473 217 VLGGDLAKEREKVRFKIGVKGNNGVGFGVDLRNGVC 252 (281)
Q Consensus 217 ~~~g~~~~~r~~v~f~~~~~~~~~~g~~v~~~n~~~ 252 (281)
.+.=|+-+|+|||.||-- -.+||+|
T Consensus 82 ~~~~dfdke~gkV~~~S~-----------fI~NGVC 106 (134)
T 1e50_B 82 REYVDLEREAGKVYLKAP-----------MILNGVC 106 (134)
T ss_dssp TTTEESSSSTTEEEEEEE-----------EEETTEE
T ss_pred hhhcccccCCceEEEEcc-----------ceecceE
Confidence 344588899999999852 3579999
No 74
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=21.74 E-value=2e+02 Score=24.89 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCcCccChHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 023473 37 VAVSQICRSVGFKAAESSALETLTLVA---AKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSS 100 (281)
Q Consensus 37 ~sVaqIL~~~GFdsa~~sALetLTdil---~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi 100 (281)
..+...+...|. ...+.+++.|.... .+.+..+...+..+|...+....+..|+..++..+++
T Consensus 191 ~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 191 LILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 344455666664 36788888887753 4667777777878898888888999999999998765
No 75
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=21.53 E-value=1.6e+02 Score=25.29 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCcCccChHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 023473 36 KVAVSQICRSVGFKAAESSALETLTLVA---AKYLQQLASRAASYSHVAHRSESNLVDLTNALNDVSS 100 (281)
Q Consensus 36 r~sVaqIL~~~GFdsa~~sALetLTdil---~~YL~~Lg~sa~~yAelaGRT~pnl~DV~~AL~dmGi 100 (281)
...+...+...|.. +++.+++.|.... .+.+..+...+..+|...+....+..|+..++..+..
T Consensus 174 ~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 240 (324)
T 1hqc_A 174 AQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL 240 (324)
T ss_dssp HHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 34455566666764 6788888887764 4566666666666666667777899999999888754
Done!