Query 023474
Match_columns 281
No_of_seqs 240 out of 1320
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 7.4E-35 1.6E-39 267.5 15.3 190 1-198 65-260 (317)
2 KOG1470 Phosphatidylinositol t 100.0 1.3E-33 2.9E-38 254.1 12.8 177 1-197 69-245 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 4.3E-32 9.4E-37 224.0 11.1 152 31-188 3-157 (159)
4 smart00516 SEC14 Domain in hom 100.0 7.2E-30 1.6E-34 210.5 14.8 152 32-195 6-157 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 1.1E-25 2.4E-30 183.4 13.2 144 37-189 10-156 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.6 3.4E-15 7.4E-20 122.4 5.9 141 37-197 4-146 (149)
7 KOG4406 CDC42 Rho GTPase-activ 98.5 8.1E-07 1.7E-11 82.6 9.6 126 42-183 89-215 (467)
8 KOG1534 Putative transcription 29.4 66 0.0014 28.4 3.4 105 71-181 75-192 (273)
9 PF03641 Lysine_decarbox: Poss 29.1 92 0.002 24.6 4.1 43 134-178 86-133 (133)
10 PRK10553 assembly protein for 27.7 42 0.0009 24.9 1.7 16 248-263 39-54 (87)
11 TIGR02364 dha_pts dihydroxyace 27.0 87 0.0019 24.7 3.6 50 95-154 60-109 (125)
12 PF04378 RsmJ: Ribosomal RNA s 20.9 54 0.0012 29.2 1.4 31 130-160 203-233 (245)
13 COG2961 ComJ Protein involved 20.5 66 0.0014 28.9 1.8 26 133-158 237-262 (279)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=7.4e-35 Score=267.49 Aligned_cols=190 Identities=33% Similarity=0.498 Sum_probs=169.5
Q ss_pred CHHHHHHHHHHCCcchhhcCCCCCHHHHHHhhccceeeeeCcCCCCCeEEEEeccCCCCC----CCCHHHHHHHHHHHHH
Q 023474 1 MLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHD----KASVNYYVQSHIQMNE 76 (281)
Q Consensus 1 ML~~~l~WRk~~~id~il~~~~~~~e~~~~l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~----~~~~~~~lr~~i~~~E 76 (281)
||+++++||+++++|+|..+. ...+ .+.++++.+++|.|++|+||++.+.|..+.. .....+++++++...|
T Consensus 65 ~l~~~l~~r~~~~~d~i~~~~-~~~~---~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e 140 (317)
T KOG1471|consen 65 MLKRYLNWRKRNKLDEIFEDF-EEDD---ELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFE 140 (317)
T ss_pred HHHHHHHHHHHhCCccHhhcc-ccch---hhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHH
Confidence 789999999999999999862 2222 2445789999999999999999999999765 4678899999999999
Q ss_pred HHHhhcchhhhhhcCCccceEEEEEeCCCCCCCCcch--HHHHHHHHHhccccCccccceEEEEcCChHHHHHHHHhccc
Q 023474 77 YRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPL 154 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~~~~--~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~~lvkpf 154 (281)
+..+.+++.+.+..++++++++.|+||+|+++++++. .++++.++.++|+||||+++++||||+|++|.++|++||||
T Consensus 141 ~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpf 220 (317)
T KOG1471|consen 141 KVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPF 220 (317)
T ss_pred HHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhcc
Confidence 9998888877777678899999999999999999965 57899999999999999999999999999999999999999
Q ss_pred CCHhhhcceEEeCCCCHhHHHhhCCCCCccccccCCCCCccccc
Q 023474 155 LQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHI 198 (281)
Q Consensus 155 L~~~T~~Ki~i~~~~~~~~L~k~I~~~~LP~~ygge~GG~~~~~ 198 (281)
|+++|++||+++.+++.++|+++|+++.||++| ||++.+.
T Consensus 221 L~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~y----GG~~~~~ 260 (317)
T KOG1471|consen 221 LDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEY----GGTCGDL 260 (317)
T ss_pred CCHHHHhhheecCCCchhhhhhhCCHhhCcccc----CCCcccc
Confidence 999999999977778999999999999999999 6666663
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-33 Score=254.06 Aligned_cols=177 Identities=23% Similarity=0.384 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHCCcchhhcCCCCCHHHHHHhhccceeeeeCcCCCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHh
Q 023474 1 MLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDR 80 (281)
Q Consensus 1 ML~~~l~WRk~~~id~il~~~~~~~e~~~~l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~~~~~~~lr~~i~~~E~~~~ 80 (281)
||.+||.||+++++...+. ..|+..+ ...+.+++.|+|++||||+|+++........+.+++.|+.+++||..+.
T Consensus 69 ml~~tL~WR~~~~~~~~~~----~~Ev~~e-~~tGK~yi~G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai~ 143 (324)
T KOG1470|consen 69 MLSNTLKWRRSFGPEEVIE----ADEVAAE-LETGKAYILGHDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTLENAIL 143 (324)
T ss_pred HHHHHhHHHHhcCCccccC----HHHHHHH-hhcCcEEEecccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999987332 2233322 3457899999999999999998776656667889999999999998653
Q ss_pred hcchhhhhhcCCccceEEEEEeCCCCCCCCcchHHHHHHHHHhccccCccccceEEEEcCChHHHHHHHHhcccCCHhhh
Q 023474 81 VVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTR 160 (281)
Q Consensus 81 ~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~~~~~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~T~ 160 (281)
.++++++++++++|+.|+|+++.+ +++.+.+++++|+||||+|+.++++|+||+|..+|+++||||++.|+
T Consensus 144 --------~lp~~qe~~~~L~D~~~fs~sN~d-~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~ 214 (324)
T KOG1470|consen 144 --------FLPPGQEQFVWLFDLTGFSMSNPD-IKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTA 214 (324)
T ss_pred --------hCCCCcceEEEEEecccCcccCCC-cHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhh
Confidence 457788999999999999999766 78899999999999999999999999999999999999999999999
Q ss_pred cceEEeCCCCHhHHHhhCCCCCccccccCCCCCcccc
Q 023474 161 RKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRH 197 (281)
Q Consensus 161 ~Ki~i~~~~~~~~L~k~I~~~~LP~~ygge~GG~~~~ 197 (281)
+||+|..+ ...|.+|||+++||..| ||+...
T Consensus 215 ~Kv~F~~~--~~~l~~~~d~~~l~s~~----GG~~~~ 245 (324)
T KOG1470|consen 215 SKVKFVEP--KDDLSEYFDESQLPSLF----GGKLLF 245 (324)
T ss_pred ceeEEecC--hhHHHhhCCccccchhh----CCCccc
Confidence 99999874 56699999999999999 664433
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.97 E-value=4.3e-32 Score=223.99 Aligned_cols=152 Identities=28% Similarity=0.467 Sum_probs=125.8
Q ss_pred hhccceeeeeCcCCCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhhhcCCccceEEEEEeCCCCCCCC
Q 023474 31 VRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSA 110 (281)
Q Consensus 31 l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~~~~~~~lr~~i~~~E~~~~~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~ 110 (281)
+.++++++++|+|++||||+++++|++|+.+.+.++++++.++++|..++.. + . +.+++++++|+|++|+++++
T Consensus 3 ~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~-~---~--~~~~~~~~~iiD~~g~~~~~ 76 (159)
T PF00650_consen 3 ILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRM-P---E--GGQVEGIVVIIDLSGFSLSN 76 (159)
T ss_dssp HHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTH-H---H--TSHHH-EEEEEE-TT--HHH
T ss_pred HHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhh-c---c--cccceeEEEEEeCCCceEec
Confidence 5678999999999999999999999999888888999999999999987532 1 1 45679999999999999998
Q ss_pred cch--HHHHHHHHHhccccCccccceEEEEcCChHHHHHHHHhcccCCHhhhcceEEeCC-CCHhHHHhhCCCCCccccc
Q 023474 111 LNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQG-NGRDELLKIMDYASLPHFC 187 (281)
Q Consensus 111 ~~~--~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~T~~Ki~i~~~-~~~~~L~k~I~~~~LP~~y 187 (281)
+.. ++.++.+++++|++|||+++++||||+|++|.++|++++|||+++|++||+++++ ++.++|.++||+++||.+|
T Consensus 77 ~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP~~~ 156 (159)
T PF00650_consen 77 FDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLPVEY 156 (159)
T ss_dssp HHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSBGGG
T ss_pred cccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCchhc
Confidence 753 6889999999999999999999999999999999999999999999999999965 4557999999999999999
Q ss_pred c
Q 023474 188 R 188 (281)
Q Consensus 188 g 188 (281)
|
T Consensus 157 G 157 (159)
T PF00650_consen 157 G 157 (159)
T ss_dssp T
T ss_pred C
Confidence 3
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.97 E-value=7.2e-30 Score=210.48 Aligned_cols=152 Identities=26% Similarity=0.461 Sum_probs=137.1
Q ss_pred hccceeeeeCcCCCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhhhcCCccceEEEEEeCCCCCCCCc
Q 023474 32 RDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSAL 111 (281)
Q Consensus 32 ~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~~~~~~~lr~~i~~~E~~~~~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~~ 111 (281)
+.+.+.++ |.|++||||+++++++++.++.+.+++++++++.+|.+.+. ...+..++++++|+|++|++++++
T Consensus 6 ~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~~~i~D~~~~~~~~~ 78 (158)
T smart00516 6 KAYIPGGR-GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQR------EKKTGGIEGFTVIFDLKGLSMSNP 78 (158)
T ss_pred HHhcCCCC-CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHH------HhcCCCeeeEEEEEECCCCCcccc
Confidence 44566676 99999999999999999888899999999999999987642 123567899999999999999985
Q ss_pred chHHHHHHHHHhccccCccccceEEEEcCChHHHHHHHHhcccCCHhhhcceEEeCCCCHhHHHhhCCCCCccccccCCC
Q 023474 112 NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEG 191 (281)
Q Consensus 112 ~~~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~T~~Ki~i~~~~~~~~L~k~I~~~~LP~~ygge~ 191 (281)
. +++++.++++++.+||++++++||+|+|+++.++|+++++||+++|++||+++++++.++|.++||+++||.+|
T Consensus 79 ~-~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP~~~---- 153 (158)
T smart00516 79 D-LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLPEEL---- 153 (158)
T ss_pred c-HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCcHhh----
Confidence 4 68899999999999999999999999999999999999999999999999999977789999999999999999
Q ss_pred CCcc
Q 023474 192 SGSS 195 (281)
Q Consensus 192 GG~~ 195 (281)
||++
T Consensus 154 GG~~ 157 (158)
T smart00516 154 GGTL 157 (158)
T ss_pred CCCC
Confidence 6654
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.93 E-value=1.1e-25 Score=183.44 Aligned_cols=144 Identities=33% Similarity=0.517 Sum_probs=123.9
Q ss_pred eeeeC-cCCCCCeEEEEeccCCCCCCC-CHHHHHHHHHHHHHHHHhhcchhhhhhcCCccceEEEEEeCCCCCCCCcc-h
Q 023474 37 VGVSG-YSKEGLPVIAVGVGLSTHDKA-SVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALN-Q 113 (281)
Q Consensus 37 ~~~~G-~Dk~GrPV~~~~~g~~~~~~~-~~~~~lr~~i~~~E~~~~~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~~~-~ 113 (281)
+++.| .|++||||++.++++.++.+. ..++++++.++.+|...+.. ....+++++|+|++|++++++. .
T Consensus 10 ~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--------~~~~~~~~~i~D~~~~~~~~~~~~ 81 (157)
T cd00170 10 VGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQED--------DEQVEGFVVIIDLKGLSLSHLLPD 81 (157)
T ss_pred ccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhh--------hhcccceEEEEECCCCChhccchh
Confidence 34444 699999999999997665543 34889999999999876531 1222689999999999999884 4
Q ss_pred HHHHHHHHHhccccCccccceEEEEcCChHHHHHHHHhcccCCHhhhcceEEeCCCCHhHHHhhCCCCCccccccC
Q 023474 114 IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRK 189 (281)
Q Consensus 114 ~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~T~~Ki~i~~~~~~~~L~k~I~~~~LP~~ygg 189 (281)
+++++.++++++++||++++++||+|+|+++.++|+++++|+++++++||++++++ .++|.++|++++||.+|||
T Consensus 82 ~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG 156 (157)
T cd00170 82 PSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGG 156 (157)
T ss_pred HHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCC
Confidence 68899999999999999999999999999999999999999999999999999865 8999999999999999943
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.56 E-value=3.4e-15 Score=122.41 Aligned_cols=141 Identities=16% Similarity=0.226 Sum_probs=95.2
Q ss_pred eeeeCcCCCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhhhcCCccceEEEEEeCCCCCCCCcchHHH
Q 023474 37 VGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKL 116 (281)
Q Consensus 37 ~~~~G~Dk~GrPV~~~~~g~~~~~~~~~~~~lr~~i~~~E~~~~~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~~~~~~~ 116 (281)
.+..|+|++||||+++...++ +.....+.++.+.+..++. + -...++++|+|+++++..+-.....
T Consensus 4 ~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l~~-------~------~~~~~f~vVid~~~~~~~~~~~~~~ 69 (149)
T PF13716_consen 4 FYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTLSE-------E------VVDKPFSVVIDHTGFSRSSEPSLSW 69 (149)
T ss_dssp -EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH-T-------T------TTTS-EEEEEE-TT--GGG---HHH
T ss_pred EEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhhhH-------H------hcCCCEEEEEEcCCCccccCCchHH
Confidence 456789999999999998887 5444555666654443311 0 0114589999999998866655788
Q ss_pred HHHHHHhccccCccccceEEEEcCChHHHHHH-HHhcccCCHhh-hcceEEeCCCCHhHHHhhCCCCCccccccCCCCCc
Q 023474 117 MTVITTIDDLNYPEKTETYYIVNAPYIFSACW-KVVKPLLQERT-RRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGS 194 (281)
Q Consensus 117 ~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~-~lvkpfL~~~T-~~Ki~i~~~~~~~~L~k~I~~~~LP~~ygge~GG~ 194 (281)
++++..++...|+..++++||+|+.+++..+. .+.+++.+.+. ..||+++.+ .++|.++||+++||... ||+
T Consensus 70 l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~l----p~~ 143 (149)
T PF13716_consen 70 LKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESL----PGV 143 (149)
T ss_dssp HHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG----------HH
T ss_pred HHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccC----CCE
Confidence 99999999999999999999999999999999 56677788888 899999874 89999999999999999 777
Q ss_pred ccc
Q 023474 195 SRH 197 (281)
Q Consensus 195 ~~~ 197 (281)
..+
T Consensus 144 ~~~ 146 (149)
T PF13716_consen 144 LQY 146 (149)
T ss_dssp H--
T ss_pred Eec
Confidence 655
No 7
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=8.1e-07 Score=82.56 Aligned_cols=126 Identities=17% Similarity=0.205 Sum_probs=100.7
Q ss_pred cCCCCCeEEEEeccCCCCC-CCCHHHHHHHHHHHHHHHHhhcchhhhhhcCCccceEEEEEeCCCCCCCCcchHHHHHHH
Q 023474 42 YSKEGLPVIAVGVGLSTHD-KASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVI 120 (281)
Q Consensus 42 ~Dk~GrPV~~~~~g~~~~~-~~~~~~~lr~~i~~~E~~~~~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~~~~~~~~~~~ 120 (281)
+|+.||+|+++.+.++... +.....++++.++..++.++. + .+.++=-.|+...+...++++...
T Consensus 89 ~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve~-------------D-Yt~vYfh~gl~s~nkp~l~~l~~a 154 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVEN-------------D-YTLVYFHHGLPSDNKPYLQLLFDA 154 (467)
T ss_pred ccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHhc-------------c-ceeeehhcCCcccccchHHHHHHH
Confidence 5999999999999988654 333345788888888876431 1 344444467777777767777777
Q ss_pred HHhccccCccccceEEEEcCChHHHHHHHHhcccCCHhhhcceEEeCCCCHhHHHhhCCCCCc
Q 023474 121 TTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASL 183 (281)
Q Consensus 121 ~~i~q~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~T~~Ki~i~~~~~~~~L~k~I~~~~L 183 (281)
..-+..+|--.++.+|+|+.-|+..++|+++|||++.+..+||+.++ ..++|.++|.-+.|
T Consensus 155 Yke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n--~lseL~~~l~l~rL 215 (467)
T KOG4406|consen 155 YKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFN--SLSELFEALKLNRL 215 (467)
T ss_pred HHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEee--hHHHHHHhhhhhhh
Confidence 77778899999999999999999999999999999999999999996 48999999875544
No 8
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=29.35 E-value=66 Score=28.36 Aligned_cols=105 Identities=16% Similarity=0.262 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhcchhhhhhcCCccceEEEEEeCCCC-C-CCCcchHHHHHHHHHhccccCccccceEE------EEcCCh
Q 023474 71 HIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGL-K-LSALNQIKLMTVITTIDDLNYPEKTETYY------IVNAPY 142 (281)
Q Consensus 71 ~i~~~E~~~~~~~~~~~~~~~~~v~~~v~I~Dl~g~-s-l~~~~~~~~~~~~~~i~q~~YPe~l~~i~------iINaP~ 142 (281)
.++++||....+ +-.....| .++.-.+|+|+-|- - ..|++ .+++++.-++. .--++..+| ++.+-.
T Consensus 75 Lv~cmEyl~~Nl-dwL~~~~G-d~eddylifDcPGQIELytH~p---Vm~~iv~hl~~-~~F~~c~Vylldsqf~vD~~K 148 (273)
T KOG1534|consen 75 LVYCMEYLLENL-DWLEEEIG-DVEDDYLIFDCPGQIELYTHLP---VMPQIVEHLKQ-WNFNVCVVYLLDSQFLVDSTK 148 (273)
T ss_pred chhHHHHHHHHH-HHHHhhcc-CccCCEEEEeCCCeeEEeecCh---hHHHHHHHHhc-ccCceeEEEEeccchhhhHHH
Confidence 345667665432 11112222 45666799998663 2 23444 45555555554 223444444 555556
Q ss_pred HHHHHHHHhcccCCH-----hhhcceEEeCCCCHhHHHhhCCCC
Q 023474 143 IFSACWKVVKPLLQE-----RTRRKMQVLQGNGRDELLKIMDYA 181 (281)
Q Consensus 143 ~f~~~~~lvkpfL~~-----~T~~Ki~i~~~~~~~~L~k~I~~~ 181 (281)
+++.+.+.++.++.= ...+|+-.+++..+++|.++.+++
T Consensus 149 fiSG~lsAlsAMi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d 192 (273)
T KOG1534|consen 149 FISGCLSALSAMISLEVPHINVLSKMDLLKDKNKKELERFLNPD 192 (273)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhHHHHhhhhhHHHHHHhcCCc
Confidence 667666666555432 244555555555667777777755
No 9
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=29.11 E-value=92 Score=24.62 Aligned_cols=43 Identities=7% Similarity=0.197 Sum_probs=34.9
Q ss_pred eEEEEcCChHHHHHHHHh-----cccCCHhhhcceEEeCCCCHhHHHhhC
Q 023474 134 TYYIVNAPYIFSACWKVV-----KPLLQERTRRKMQVLQGNGRDELLKIM 178 (281)
Q Consensus 134 ~i~iINaP~~f~~~~~lv-----kpfL~~~T~~Ki~i~~~~~~~~L~k~I 178 (281)
.++++|..-++..+++.+ ..|++++..+.+.++.+ .+++.++|
T Consensus 86 Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~--~~e~~~~i 133 (133)
T PF03641_consen 86 PIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDD--PEEALEYI 133 (133)
T ss_dssp EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESS--HHHHHHHH
T ss_pred CEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCC--HHHHHhhC
Confidence 699999987777777766 56999999999999864 77777654
No 10
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=27.68 E-value=42 Score=24.91 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=13.2
Q ss_pred CCCceEEEeecccccc
Q 023474 248 PEGAKITKKIESEFHR 263 (281)
Q Consensus 248 ~e~~~~~~~~~~~~~~ 263 (281)
.+.||||.|||.+...
T Consensus 39 ~~~GKiVVtiE~~~~~ 54 (87)
T PRK10553 39 APSGQLIVVVEAEDSE 54 (87)
T ss_pred CCCCeEEEEEEeCChH
Confidence 3789999999987654
No 11
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=27.01 E-value=87 Score=24.73 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=34.7
Q ss_pred ceEEEEEeCCCCCCCCcchHHHHHHHHHhccccCccccceEEEEcCChHHHHHHHHhccc
Q 023474 95 GTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPL 154 (281)
Q Consensus 95 ~~~v~I~Dl~g~sl~~~~~~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~~lvkpf 154 (281)
++++++.|+ |-+..+.. .++.+++ ++..+++..+|+|.+..++-..+..-
T Consensus 60 dgVlvl~DL-Ggs~~n~e------~a~~~l~---~~~~~~v~g~nlPlvega~~aa~~~~ 109 (125)
T TIGR02364 60 DGVLIFYDL-GSAVMNAE------MAVELLE---DEDRDKVHLVDAPLVEGAFAAAVEAQ 109 (125)
T ss_pred CCEEEEEcC-CCcHhHHH------HHHHHhc---cccccEEEEechhHHHHHHHHHHHHc
Confidence 779999999 66544321 1222322 46668999999999999888877543
No 12
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=20.91 E-value=54 Score=29.21 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=21.4
Q ss_pred cccceEEEEcCChHHHHHHHHhcccCCHhhh
Q 023474 130 EKTETYYIVNAPYIFSACWKVVKPLLQERTR 160 (281)
Q Consensus 130 e~l~~i~iINaP~~f~~~~~lvkpfL~~~T~ 160 (281)
..=..++|||+||-+....+-+-|+|.+...
T Consensus 203 m~GSGm~iiNPPw~l~~~l~~~l~~L~~~L~ 233 (245)
T PF04378_consen 203 MNGSGMLIINPPWTLDEELEEILPWLAETLA 233 (245)
T ss_dssp --EEEEEEES--TTHHHHHHHHHHHHHHHSS
T ss_pred eecceEEEEcCCccHHHHHHHHHHHHHHHhC
Confidence 3345799999999999888888887776543
No 13
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=20.55 E-value=66 Score=28.92 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=22.4
Q ss_pred ceEEEEcCChHHHHHHHHhcccCCHh
Q 023474 133 ETYYIVNAPYIFSACWKVVKPLLQER 158 (281)
Q Consensus 133 ~~i~iINaP~~f~~~~~lvkpfL~~~ 158 (281)
..++|||+||-+..-...+-|+|...
T Consensus 237 SGMivINPPwtle~ql~~~LP~L~~~ 262 (279)
T COG2961 237 SGMIVINPPWTLEQQLRAALPWLTTL 262 (279)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHH
Confidence 47899999999999888888888764
Done!