Query 023474
Match_columns 281
No_of_seqs 240 out of 1320
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 07:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 6E-44 2.1E-48 336.6 18.0 233 1-247 55-298 (403)
2 1aua_A Phosphatidylinositol tr 100.0 9E-41 3.1E-45 302.6 15.9 199 1-207 72-275 (296)
3 3q8g_A CRAL-TRIO domain-contai 100.0 4.4E-41 1.5E-45 308.2 12.3 200 1-207 81-290 (320)
4 1r5l_A Alpha-TTP, protein (alp 100.0 7.5E-37 2.6E-41 271.5 15.0 178 1-190 53-232 (262)
5 3hx3_A Retinaldehyde-binding p 100.0 3.6E-36 1.2E-40 275.1 14.9 181 1-197 112-294 (316)
6 3pg7_A Neurofibromin; SEC lipi 99.4 2.6E-13 8.8E-18 120.1 7.5 138 31-184 7-145 (256)
7 3peg_A Neurofibromin; SEC14 do 99.2 2.7E-11 9.2E-16 108.8 8.5 137 31-183 26-163 (290)
8 1olm_A SEC14-like protein 2; l 33.1 19 0.00064 32.7 2.1 29 232-266 346-374 (403)
9 3sbx_A Putative uncharacterize 23.6 1.5E+02 0.0051 24.0 5.8 46 133-180 139-189 (189)
10 2ka5_A Putative anti-sigma fac 21.2 2.1E+02 0.0072 20.7 5.9 51 98-152 54-104 (125)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=6e-44 Score=336.56 Aligned_cols=233 Identities=26% Similarity=0.388 Sum_probs=203.4
Q ss_pred CHHHHHHHHHHCCcchhhcCCCCCHHHHHHhhccceeeeeCcCCCCCeEEEEeccCCCCC----CCCHHHHHHHHHHHHH
Q 023474 1 MLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHD----KASVNYYVQSHIQMNE 76 (281)
Q Consensus 1 ML~~~l~WRk~~~id~il~~~~~~~e~~~~l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~----~~~~~~~lr~~i~~~E 76 (281)
||+++++||+++++|+|++. . +++ .++++.+.+++|+|++||||+++++|++|++ ..+.++++|++++++|
T Consensus 55 ~l~~~l~wR~~~~~~~i~~~-~-~~~---~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E 129 (403)
T 1olm_A 55 MLRKHVEFRKQKDIDNIISW-Q-PPE---VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECE 129 (403)
T ss_dssp HHHHHHHHHHHTTGGGGGGS-C-CCH---HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccccc-C-CHH---HHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHH
Confidence 79999999999999999873 2 344 2466778889999999999999999999875 4788999999999999
Q ss_pred HHHhhcchhhhhhcCCccceEEEEEeCCCCCCCCcch--HHHHHHHHHhccccCccccceEEEEcCChHHHHHHHHhccc
Q 023474 77 YRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPL 154 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~~~~--~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~~lvkpf 154 (281)
..++. ++.++++.|.+++++++|+||+|+++++++. +++++.+++++|+||||+++++||||+|++|.++|+++|||
T Consensus 130 ~~~~~-~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpf 208 (403)
T 1olm_A 130 LLLQE-CAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPF 208 (403)
T ss_dssp HHHHH-HHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGG
T ss_pred HHHHH-HHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhh
Confidence 98874 3455666788899999999999999999875 57899999999999999999999999999999999999999
Q ss_pred CCHhhhcceEEeCCCCHhHHHhhCCCCCccccccCCCCCcccccCCCCCCCCcC---CCCcchhhhHHHHHhhhh-cc-c
Q 023474 155 LQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFS---LDHAFHQRLYNYIKQQAV-LT-E 229 (281)
Q Consensus 155 L~~~T~~Ki~i~~~~~~~~L~k~I~~~~LP~~ygge~GG~~~~~~~~~~~~c~~---~~~~~~~~~y~~i~~~~~-~~-~ 229 (281)
|+++|++||+|+++++.++|.++||+++||++| ||++.+ +++++.|.+ +|+++|+++| ...+.. .. +
T Consensus 209 l~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~y----GG~~~~--~~~~~~c~~~i~~gg~vp~~~~--~~~~~~~~~~~ 280 (403)
T 1olm_A 209 LSEDTRKKIMVLGANWKEVLLKHISPDQVPVEY----GGTMTD--PDGNPKCKSKINYGGDIPRKYY--VRDQVKQQYEH 280 (403)
T ss_dssp SCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGG----TSSBCC--TTCCTTCTTTCBCCCCCCGGGC--SCSSCCCCCSE
T ss_pred cCHhhhceEEEEChhHHHHHHhhcChhhCchhh----CCCcCC--CCCCcccccccccCCCCCcccc--cCCCcccccce
Confidence 999999999999877788999999999999999 899888 689999985 4899999999 554422 12 3
Q ss_pred cccccccCceEEecCCCC
Q 023474 230 SVVPIRQGSFHVDFPEPD 247 (281)
Q Consensus 230 ~~~~~~~~s~~~~~~~~~ 247 (281)
+..+.+|.+++|.+++.+
T Consensus 281 ~~~V~~g~~~~v~~~v~~ 298 (403)
T 1olm_A 281 SVQISRGSSHQVEYEILF 298 (403)
T ss_dssp EEEECTTCEEEEEEEECS
T ss_pred EEEEcCCCEEEEEEEEcC
Confidence 478889999999988863
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=9e-41 Score=302.56 Aligned_cols=199 Identities=25% Similarity=0.378 Sum_probs=174.6
Q ss_pred CHHHHHHHHHHCCcchhhcCCCCCHHHHHHhhccceeeeeCcCCCCCeEEEEeccCCCCCC----CCHHHHHHHHHHHHH
Q 023474 1 MLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSHIQMNE 76 (281)
Q Consensus 1 ML~~~l~WRk~~~id~il~~~~~~~e~~~~l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~----~~~~~~lr~~i~~~E 76 (281)
||+++++||+++++|+|..+. .+++ ...++++++.+++|+|++||||+++++|++|+++ .+.+++++++++.+|
T Consensus 72 ~l~~~l~wR~~~~~~~i~~~~-~~~~-~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E 149 (296)
T 1aua_A 72 MFENCEKWRKDYGTDTILQDF-HYDE-KPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYE 149 (296)
T ss_dssp HHHHHHHHHHHHTGGGHHHHC-CCTT-HHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhhcc-ccCc-HHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHH
Confidence 789999999999999998753 2322 2356788889999999999999999999988643 578899999999999
Q ss_pred HHHhhcchhhhhhcCCccceEEEEEeCCCCCCCCcch-HHHHHHHHHhccccCccccceEEEEcCChHHHHHHHHhcccC
Q 023474 77 YRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLL 155 (281)
Q Consensus 77 ~~~~~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~~~~-~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~~lvkpfL 155 (281)
..++..++.+++..|.+++++++|+||+|+++++++. +++++.+++++|++|||+++++||||+|++|.++|+++||||
T Consensus 150 ~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl 229 (296)
T 1aua_A 150 SVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFL 229 (296)
T ss_dssp HHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhc
Confidence 9887666677777788899999999999999999876 478899999999999999999999999999999999999999
Q ss_pred CHhhhcceEEeCCCCHhHHHhhCCCCCccccccCCCCCcccccCCCCCCCCc
Q 023474 156 QERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCF 207 (281)
Q Consensus 156 ~~~T~~Ki~i~~~~~~~~L~k~I~~~~LP~~ygge~GG~~~~~~~~~~~~c~ 207 (281)
+++|++||+|+++++.++|.++||+++||++| ||++.+. +....|.
T Consensus 230 ~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~y----GG~~~~~--~~~~g~~ 275 (296)
T 1aua_A 230 DPVTVSKIFILGSSYQKELLKQIPAENLPVKF----GGKSEVD--ESKGGLY 275 (296)
T ss_dssp CHHHHTTEEECCSCCHHHHTTTSCSSSSBGGG----TSCBCCC--GGGCCST
T ss_pred CHhhcceEEEeCcccHHHHHhhCCHhhCcHHh----CCCCCCC--CCCCCce
Confidence 99999999999988899999999999999999 8888773 2233465
No 3
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=4.4e-41 Score=308.16 Aligned_cols=200 Identities=26% Similarity=0.392 Sum_probs=175.5
Q ss_pred CHHHHHHHHHHCCcchhhcCCCCCH-H----HHHHhhccceeeeeCcCCCCCeEEEEeccCCCCCC----CCHHHHHHHH
Q 023474 1 MLVDCLRWRIENDIDNILAKPILPA-E----LYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDK----ASVNYYVQSH 71 (281)
Q Consensus 1 ML~~~l~WRk~~~id~il~~~~~~~-e----~~~~l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~----~~~~~~lr~~ 71 (281)
||+++++||+++++|+|.++. .++ + ....+.++++.+++|+|++||||+|+++|++|+++ .+.++++++.
T Consensus 81 mL~~~l~WRk~~~vd~i~~~~-~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~l 159 (320)
T 3q8g_A 81 MFVETERWREEYGANTIIEDY-ENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNL 159 (320)
T ss_dssp HHHHHHHHHHHHTGGGHHHHH-HHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccc-ccccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHH
Confidence 799999999999999998652 122 1 22357788999999999999999999999998754 4788899999
Q ss_pred HHHHHHHHhhcchhhhhhcCCccceEEEEEeCCCCCCCCcch-HHHHHHHHHhccccCccccceEEEEcCChHHHHHHHH
Q 023474 72 IQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKV 150 (281)
Q Consensus 72 i~~~E~~~~~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~~~~-~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~~l 150 (281)
++.+|..++..++++++..|..++++++|+||+|+++++++. +++++.++.++|++|||+++++||||+|++|.++|++
T Consensus 160 v~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ 239 (320)
T 3q8g_A 160 VKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKM 239 (320)
T ss_dssp HHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHH
Confidence 999999887666777788888999999999999999999876 5788999999999999999999999999999999999
Q ss_pred hcccCCHhhhcceEEeCCCCHhHHHhhCCCCCccccccCCCCCcccccCCCCCCCCc
Q 023474 151 VKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCF 207 (281)
Q Consensus 151 vkpfL~~~T~~Ki~i~~~~~~~~L~k~I~~~~LP~~ygge~GG~~~~~~~~~~~~c~ 207 (281)
+||||+++|++||+|+++++.++|.++||+++||++| ||++.+. +.++.|.
T Consensus 240 ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~y----GG~~~~~--~~~ggc~ 290 (320)
T 3q8g_A 240 VKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKY----GGTSVLH--NPNDKFY 290 (320)
T ss_dssp TGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGSBGGG----TSCBCCS--STTSCGG
T ss_pred HHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhCChhh----CCCCCCC--CCCCCee
Confidence 9999999999999999877789999999999999999 8888773 3344575
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=7.5e-37 Score=271.52 Aligned_cols=178 Identities=18% Similarity=0.261 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHCCcchhhcCCCCCHHHHHHhhccceeeeeCcCCCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHh
Q 023474 1 MLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDR 80 (281)
Q Consensus 1 ML~~~l~WRk~~~id~il~~~~~~~e~~~~l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~~~~~~~lr~~i~~~E~~~~ 80 (281)
||+++++||++++ ++... +.|+++.+.++.++..+++|+|++||||+++++|++|+++.+..+++++.++++|..++
T Consensus 53 ~l~~~l~wR~~~~--~i~~~-~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~ 129 (262)
T 1r5l_A 53 LLKNYYKWRAECP--EISAD-LHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQ 129 (262)
T ss_dssp HHHHHHHHHHHCH--HHHSC-CCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCh--Hhhhc-CChHHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHh
Confidence 7899999999995 34432 33445555566667778999999999999999999999888889999999999997643
Q ss_pred hcchhhhhhcCCccceEEEEEeCCCCCCCCcch--HHHHHHHHHhccccCccccceEEEEcCChHHHHHHHHhcccCCHh
Q 023474 81 VVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQER 158 (281)
Q Consensus 81 ~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~~~~--~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~ 158 (281)
. . ..++.++++|+|++|++++++++ +++++.+++++|++|||+++++||||+|++|.++|+++||||+++
T Consensus 130 ~----~----~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~ 201 (262)
T 1r5l_A 130 E----V----ETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEK 201 (262)
T ss_dssp S----H----HHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHH
T ss_pred C----h----hhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHH
Confidence 2 1 12357899999999999999864 578999999999999999999999999999999999999999999
Q ss_pred hhcceEEeCCCCHhHHHhhCCCCCccccccCC
Q 023474 159 TRRKMQVLQGNGRDELLKIMDYASLPHFCRKE 190 (281)
Q Consensus 159 T~~Ki~i~~~~~~~~L~k~I~~~~LP~~ygge 190 (281)
|++||+|+++++.++|.++|| ++||++|||+
T Consensus 202 t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yGG~ 232 (262)
T 1r5l_A 202 IKERIHMHGNNYKQSLLQHFP-DILPLEYGGE 232 (262)
T ss_dssp HHTTEEECCSSCHHHHHHHST-TTSCGGGTCS
T ss_pred HHhheEEeCCCcHHHHHHHhh-hhCcHhhCCC
Confidence 999999998778899999999 9999999443
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=3.6e-36 Score=275.14 Aligned_cols=181 Identities=13% Similarity=0.197 Sum_probs=157.4
Q ss_pred CHHHHHHHHHHCCcchhhcCCCCCHHHHHHhhccceeeeeCcCCCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHh
Q 023474 1 MLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDR 80 (281)
Q Consensus 1 ML~~~l~WRk~~~id~il~~~~~~~e~~~~l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~~~~~~~lr~~i~~~E~~~~ 80 (281)
||+++++||++++ ++.+. +.++++...++.+.+.+++|+|++||||+++++|++|+++.+.++++|++++++|..++
T Consensus 112 ~L~~~l~wR~~~~--~~~~~-~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~ 188 (316)
T 3hx3_A 112 LLRGYVNFRLQYP--ELFDS-LSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLE 188 (316)
T ss_dssp HHHHHHHHHHHCG--GGTTT-CCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCc--hhhcC-CCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 7899999999996 34443 34555555567777888999999999999999999999988999999999999998753
Q ss_pred hcchhhhhhcCCccceEEEEEeCCCCCCCCcch--HHHHHHHHHhccccCccccceEEEEcCChHHHHHHHHhcccCCHh
Q 023474 81 VVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQER 158 (281)
Q Consensus 81 ~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~~~~--~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~ 158 (281)
. .+.+++++++|+|++|++++|++. .+.++.++.++|++|||+++++||||+|++|.++|+++||||+++
T Consensus 189 ~--------~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~k 260 (316)
T 3hx3_A 189 N--------EETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSK 260 (316)
T ss_dssp S--------HHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHH
T ss_pred c--------ccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHH
Confidence 1 123578999999999999999854 578899999999999999999999999999999999999999999
Q ss_pred hhcceEEeCCCCHhHHHhhCCCCCccccccCCCCCcccc
Q 023474 159 TRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRH 197 (281)
Q Consensus 159 T~~Ki~i~~~~~~~~L~k~I~~~~LP~~ygge~GG~~~~ 197 (281)
|++||+|++++ .++|.++||+++||++| ||++.+
T Consensus 261 t~~KI~~~~~~-~~~L~~~I~~~~LP~ey----GG~~~~ 294 (316)
T 3hx3_A 261 LLERVFVHGDD-LSGFYQEIDENILPSDF----GGTLPK 294 (316)
T ss_dssp HHTTEEEEETC-CHHHHHHSCGGGSBGGG----TSSBCC
T ss_pred hhhheEEeCCC-HHHHHhhCCHhhCcHhh----CCCCCC
Confidence 99999999755 46999999999999999 777654
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.41 E-value=2.6e-13 Score=120.06 Aligned_cols=138 Identities=11% Similarity=0.029 Sum_probs=113.9
Q ss_pred hhccceeeeeCcCCCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhhhcCCccceEEEEEeCCCCCCCC
Q 023474 31 VRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSA 110 (281)
Q Consensus 31 l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~~~~~~~lr~~i~~~E~~~~~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~ 110 (281)
|.+....+-.|.|++||||+++.+++++......+.++.+.+..++... -....+|+|+++++..+
T Consensus 7 i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~--------------~~~y~lV~d~T~~~~~n 72 (256)
T 3pg7_A 7 LKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSN 72 (256)
T ss_dssp HHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGG
T ss_pred HHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc--------------CCCeEEEEECCCCCccc
Confidence 4455667777999999999999999998766777777777666655321 14578999999999888
Q ss_pred cchHHHHHHHHHhccccCccccceEEEEcCChHHHHHHHH-hcccCCHhhhcceEEeCCCCHhHHHhhCCCCCcc
Q 023474 111 LNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKV-VKPLLQERTRRKMQVLQGNGRDELLKIMDYASLP 184 (281)
Q Consensus 111 ~~~~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~~l-vkpfL~~~T~~Ki~i~~~~~~~~L~k~I~~~~LP 184 (281)
.+..++++.+.+++...|...++++||+|++++|...|+. .++|.+.+..+|++++++ .++|.++|+.++|.
T Consensus 73 ~p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L~ 145 (256)
T 3pg7_A 73 RFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQK 145 (256)
T ss_dssp CCCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGCC
T ss_pred CCcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHcC
Confidence 7778999999999999999999999999999999976665 466666688899999975 89999999877653
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.21 E-value=2.7e-11 Score=108.79 Aligned_cols=137 Identities=10% Similarity=0.016 Sum_probs=103.0
Q ss_pred hhccceeeeeCcCCCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhhhcCCccceEEEEEeCCCCCCCC
Q 023474 31 VRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSA 110 (281)
Q Consensus 31 l~~~~~~~~~G~Dk~GrPV~~~~~g~~~~~~~~~~~~lr~~i~~~E~~~~~~~~~~~~~~~~~v~~~v~I~Dl~g~sl~~ 110 (281)
|......+-.|.|++||||+++.+++++......+.++-+.+..++... -....+|+|+++++..+
T Consensus 26 i~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n 91 (290)
T 3peg_A 26 LKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSN 91 (290)
T ss_dssp GGGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGG
T ss_pred hhcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccC
Confidence 3444556666889999999999999998766777777776666554321 14688999999999887
Q ss_pred cchHHHHHHHHHhccccCccccceEEEEcCChHHHHHH-HHhcccCCHhhhcceEEeCCCCHhHHHhhCCCCCc
Q 023474 111 LNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACW-KVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASL 183 (281)
Q Consensus 111 ~~~~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~-~lvkpfL~~~T~~Ki~i~~~~~~~~L~k~I~~~~L 183 (281)
-+..++++.+.+++...|++.++++||+|++++|...+ ...++|.+.+..+|+++++. ...|..+++++++
T Consensus 92 ~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~L~~~i~~~~~ 163 (290)
T 3peg_A 92 RFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 163 (290)
T ss_dssp CCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC----------
T ss_pred CChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHHHHhhCCHHHh
Confidence 77788999999999999999999999999999999755 56788888888999999864 3558899987743
No 8
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=33.09 E-value=19 Score=32.69 Aligned_cols=29 Identities=7% Similarity=0.196 Sum_probs=23.9
Q ss_pred cccccCceEEecCCCCCCCceEEEeeccccccccC
Q 023474 232 VPIRQGSFHVDFPEPDPEGAKITKKIESEFHRIGD 266 (281)
Q Consensus 232 ~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 266 (281)
.....|||.+. ++|+.+++.||+++.++.
T Consensus 346 ~~~~~G~~~~~------~~G~y~l~fdNs~S~~~~ 374 (403)
T 1olm_A 346 LVPEDGTLTCS------DPGIYVLRFDNTYSFIHA 374 (403)
T ss_dssp TSCEEEEEECC------SCEEEEEEEECTTCCCCS
T ss_pred cccccCEEEcC------CCeEEEEEEeccccceec
Confidence 34457888887 999999999999987753
No 9
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=23.55 E-value=1.5e+02 Score=23.98 Aligned_cols=46 Identities=9% Similarity=0.113 Sum_probs=35.7
Q ss_pred ceEEEEcCChHHHHHHHHh-----cccCCHhhhcceEEeCCCCHhHHHhhCCC
Q 023474 133 ETYYIVNAPYIFSACWKVV-----KPLLQERTRRKMQVLQGNGRDELLKIMDY 180 (281)
Q Consensus 133 ~~i~iINaP~~f~~~~~lv-----kpfL~~~T~~Ki~i~~~~~~~~L~k~I~~ 180 (281)
+-++++|..-++..+..++ .-|++++.++.+.+..+ .+++.+++.|
T Consensus 139 kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~--~ee~~~~l~~ 189 (189)
T 3sbx_A 139 KSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDN--LDDALQACAP 189 (189)
T ss_dssp CCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESS--HHHHHHHHCC
T ss_pred CCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCC--HHHHHHHhcC
Confidence 6799999976666666544 34999999999999864 8888887754
No 10
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=21.17 E-value=2.1e+02 Score=20.70 Aligned_cols=51 Identities=6% Similarity=-0.003 Sum_probs=35.5
Q ss_pred EEEEeCCCCCCCCcchHHHHHHHHHhccccCccccceEEEEcCChHHHHHHHHhc
Q 023474 98 LKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 152 (281)
Q Consensus 98 v~I~Dl~g~sl~~~~~~~~~~~~~~i~q~~YPe~l~~i~iINaP~~f~~~~~lvk 152 (281)
.+|+||++++.-.-..+..+..+.+.++ +.=.++.++|++.-..-++.+..
T Consensus 54 ~vvlDls~V~~iDSsGl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~g 104 (125)
T 2ka5_A 54 KIFLVLSDVESIDSFSLGVIVNILKSIS----SSGGFFALVSPNEKVERVLSLTN 104 (125)
T ss_dssp EEEEECTTCSCCCHHHHHHHHHHHHHHH----HHTCEEEEECCCHHHHHHHHHTT
T ss_pred EEEEECCCCCEEcHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHcC
Confidence 5899999998776554555554444443 33478999999988777777643
Done!