Query 023475
Match_columns 281
No_of_seqs 362 out of 1975
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:19:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149 Predicted RNA-binding 99.9 6.8E-24 1.5E-28 182.3 16.2 92 23-114 4-96 (247)
2 PLN03134 glycine-rich RNA-bind 99.8 1.3E-19 2.9E-24 149.1 15.5 84 28-111 31-115 (144)
3 TIGR01659 sex-lethal sex-letha 99.8 5.1E-18 1.1E-22 158.2 12.9 85 26-110 102-187 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 4.3E-17 9.4E-22 151.8 13.5 85 28-112 266-351 (352)
5 TIGR01659 sex-lethal sex-letha 99.7 1.5E-16 3.3E-21 148.3 14.7 85 28-112 190-277 (346)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 8.3E-17 1.8E-21 149.9 10.7 82 30-111 2-84 (352)
7 TIGR01628 PABP-1234 polyadenyl 99.7 7.7E-16 1.7E-20 152.4 17.1 86 28-114 282-368 (562)
8 KOG0125 Ataxin 2-binding prote 99.7 2.2E-16 4.9E-21 141.5 8.9 85 24-110 89-174 (376)
9 KOG0148 Apoptosis-promoting RN 99.7 1.2E-15 2.5E-20 133.9 12.8 79 28-112 161-240 (321)
10 KOG0117 Heterogeneous nuclear 99.7 4.5E-15 9.7E-20 137.8 17.3 82 26-115 254-336 (506)
11 KOG0144 RNA-binding protein CU 99.7 2.5E-16 5.4E-21 145.5 8.9 108 6-113 9-120 (510)
12 KOG0122 Translation initiation 99.6 1.3E-15 2.8E-20 131.9 10.8 83 28-110 186-269 (270)
13 PF00076 RRM_1: RNA recognitio 99.6 5.7E-16 1.2E-20 110.3 6.9 69 34-103 1-70 (70)
14 TIGR01648 hnRNP-R-Q heterogene 99.6 1.1E-14 2.4E-19 143.1 16.9 75 29-111 231-308 (578)
15 KOG0121 Nuclear cap-binding pr 99.6 1.7E-15 3.7E-20 119.4 6.9 81 28-108 33-114 (153)
16 PLN03120 nucleic acid binding 99.6 4.5E-15 9.7E-20 131.5 10.4 76 31-109 4-79 (260)
17 KOG0148 Apoptosis-promoting RN 99.6 2.3E-15 5E-20 132.1 7.3 82 31-112 62-144 (321)
18 PF14259 RRM_6: RNA recognitio 99.6 3.3E-15 7.2E-20 107.1 6.9 69 34-103 1-70 (70)
19 TIGR01645 half-pint poly-U bin 99.6 5.6E-15 1.2E-19 145.6 10.8 81 29-109 202-283 (612)
20 KOG4207 Predicted splicing fac 99.6 4.3E-15 9.4E-20 125.9 8.3 87 26-112 8-95 (256)
21 TIGR01645 half-pint poly-U bin 99.6 6.4E-15 1.4E-19 145.2 10.2 80 29-108 105-185 (612)
22 KOG0107 Alternative splicing f 99.6 5E-15 1.1E-19 122.5 7.7 75 30-109 9-84 (195)
23 TIGR01628 PABP-1234 polyadenyl 99.6 1E-14 2.2E-19 144.4 10.4 77 33-109 2-79 (562)
24 KOG0144 RNA-binding protein CU 99.6 2E-15 4.2E-20 139.7 4.8 87 30-117 123-213 (510)
25 TIGR01622 SF-CC1 splicing fact 99.6 3E-14 6.5E-19 137.4 12.1 83 28-110 86-168 (457)
26 KOG0113 U1 small nuclear ribon 99.5 2.1E-14 4.5E-19 127.6 9.9 81 28-108 98-179 (335)
27 TIGR01648 hnRNP-R-Q heterogene 99.5 2.1E-14 4.5E-19 141.2 10.0 78 29-107 56-135 (578)
28 KOG0111 Cyclophilin-type pepti 99.5 8.1E-15 1.7E-19 125.3 5.4 84 29-112 8-92 (298)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.5 8.2E-14 1.8E-18 136.0 12.2 83 29-111 293-376 (509)
30 PLN03121 nucleic acid binding 99.5 1.1E-13 2.5E-18 120.9 10.4 76 30-108 4-79 (243)
31 TIGR01622 SF-CC1 splicing fact 99.5 1E-13 2.3E-18 133.6 11.2 78 31-108 186-264 (457)
32 KOG0145 RNA-binding protein EL 99.5 1.5E-13 3.2E-18 120.2 10.8 86 26-111 36-122 (360)
33 KOG0126 Predicted RNA-binding 99.5 5.5E-15 1.2E-19 122.9 1.4 80 30-109 34-114 (219)
34 smart00362 RRM_2 RNA recogniti 99.5 1.4E-13 3.1E-18 96.8 8.3 71 33-105 1-72 (72)
35 KOG4205 RNA-binding protein mu 99.5 4.2E-14 9.1E-19 129.2 6.9 104 30-134 5-108 (311)
36 PLN03213 repressor of silencin 99.5 9.9E-14 2.1E-18 130.3 9.4 79 27-109 6-87 (759)
37 smart00360 RRM RNA recognition 99.5 1.7E-13 3.8E-18 95.9 8.1 70 36-105 1-71 (71)
38 KOG0117 Heterogeneous nuclear 99.5 1.2E-13 2.5E-18 128.5 8.6 80 29-108 81-162 (506)
39 COG0724 RNA-binding proteins ( 99.5 2.1E-13 4.5E-18 119.4 9.6 78 31-108 115-193 (306)
40 KOG0108 mRNA cleavage and poly 99.4 1.7E-13 3.7E-18 130.3 7.8 81 32-112 19-100 (435)
41 KOG0146 RNA-binding protein ET 99.4 1.8E-13 3.8E-18 120.1 6.1 87 25-111 279-366 (371)
42 KOG0131 Splicing factor 3b, su 99.4 3E-13 6.5E-18 112.7 6.8 80 29-108 7-87 (203)
43 KOG0130 RNA-binding protein RB 99.4 6.4E-13 1.4E-17 105.8 8.2 88 25-112 66-154 (170)
44 KOG0114 Predicted RNA-binding 99.4 1.4E-12 3.1E-17 99.4 9.2 88 20-110 7-95 (124)
45 cd00590 RRM RRM (RNA recogniti 99.4 1.6E-12 3.6E-17 91.8 9.1 73 33-106 1-74 (74)
46 KOG0109 RNA-binding protein LA 99.4 4.8E-13 1E-17 118.6 7.2 71 32-110 3-74 (346)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.4E-12 3E-17 127.1 11.1 78 28-110 272-351 (481)
48 KOG4205 RNA-binding protein mu 99.4 1.6E-11 3.4E-16 112.4 15.5 85 30-114 96-180 (311)
49 KOG0127 Nucleolar protein fibr 99.4 1.9E-12 4.2E-17 123.0 9.8 87 25-111 286-379 (678)
50 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 2.3E-12 5E-17 125.5 10.5 75 31-111 2-79 (481)
51 KOG0105 Alternative splicing f 99.3 8.2E-12 1.8E-16 104.5 10.2 80 29-111 4-84 (241)
52 smart00361 RRM_1 RNA recogniti 99.3 7.6E-12 1.6E-16 90.2 7.0 61 45-105 2-70 (70)
53 KOG0145 RNA-binding protein EL 99.3 1.8E-11 3.8E-16 107.3 9.8 87 23-109 270-357 (360)
54 KOG0146 RNA-binding protein ET 99.3 4E-12 8.7E-17 111.7 5.8 85 30-115 18-106 (371)
55 KOG0131 Splicing factor 3b, su 99.3 7.7E-12 1.7E-16 104.3 6.6 84 31-114 96-181 (203)
56 KOG0127 Nucleolar protein fibr 99.3 1.4E-11 3.1E-16 117.1 8.3 80 31-111 117-197 (678)
57 KOG0415 Predicted peptidyl pro 99.3 9.4E-12 2E-16 113.0 6.6 84 25-108 233-317 (479)
58 KOG0123 Polyadenylate-binding 99.2 2.4E-11 5.2E-16 114.3 8.1 79 33-114 78-157 (369)
59 KOG0153 Predicted RNA-binding 99.2 3.1E-11 6.8E-16 109.4 8.4 80 24-109 221-302 (377)
60 PF13893 RRM_5: RNA recognitio 99.2 3.5E-11 7.6E-16 82.7 6.3 55 48-107 1-56 (56)
61 KOG4212 RNA-binding protein hn 99.2 4.3E-11 9.3E-16 111.3 8.7 78 30-108 43-122 (608)
62 KOG0116 RasGAP SH3 binding pro 99.2 1.7E-10 3.6E-15 109.4 12.4 80 30-109 287-366 (419)
63 KOG0124 Polypyrimidine tract-b 99.2 1.3E-11 2.8E-16 112.6 4.2 78 30-107 112-190 (544)
64 KOG0147 Transcriptional coacti 99.2 2.4E-11 5.2E-16 115.8 5.5 80 32-111 279-359 (549)
65 KOG4661 Hsp27-ERE-TATA-binding 99.2 1.4E-10 3E-15 110.9 9.6 80 29-108 403-483 (940)
66 KOG0109 RNA-binding protein LA 99.1 3.3E-10 7.3E-15 100.7 9.4 75 28-110 75-150 (346)
67 TIGR01642 U2AF_lg U2 snRNP aux 99.1 3.3E-10 7.1E-15 110.8 9.9 78 25-108 169-258 (509)
68 KOG0132 RNA polymerase II C-te 99.1 1.9E-10 4.2E-15 113.3 7.4 78 31-114 421-499 (894)
69 KOG4208 Nucleolar RNA-binding 99.1 4.8E-10 1E-14 95.4 8.1 87 24-110 42-130 (214)
70 KOG4206 Spliceosomal protein s 99.1 5.4E-10 1.2E-14 96.3 8.4 82 28-112 6-92 (221)
71 KOG0226 RNA-binding proteins [ 99.0 7.1E-10 1.5E-14 97.0 5.1 90 19-108 178-268 (290)
72 KOG0124 Polypyrimidine tract-b 99.0 1.6E-09 3.4E-14 99.1 7.2 81 29-109 208-289 (544)
73 KOG4212 RNA-binding protein hn 98.9 1.7E-09 3.7E-14 100.8 7.5 78 25-107 530-608 (608)
74 KOG0110 RNA-binding protein (R 98.9 8E-10 1.7E-14 108.2 4.5 84 28-111 610-694 (725)
75 KOG4849 mRNA cleavage factor I 98.9 2.1E-08 4.5E-13 91.3 13.1 75 30-104 79-156 (498)
76 KOG1457 RNA binding protein (c 98.9 1.7E-08 3.7E-13 87.0 11.7 114 1-114 1-122 (284)
77 KOG0110 RNA-binding protein (R 98.9 3.6E-09 7.9E-14 103.6 8.2 79 30-108 514-596 (725)
78 KOG0123 Polyadenylate-binding 98.9 3.9E-09 8.5E-14 99.4 8.0 73 32-110 2-75 (369)
79 KOG4209 Splicing factor RNPS1, 98.9 8.4E-09 1.8E-13 91.1 8.2 85 26-110 96-180 (231)
80 KOG0533 RRM motif-containing p 98.8 1.6E-08 3.4E-13 89.6 8.9 85 27-112 79-164 (243)
81 KOG4211 Splicing factor hnRNP- 98.7 4.4E-08 9.6E-13 92.7 9.6 81 27-110 6-86 (510)
82 KOG4454 RNA binding protein (R 98.7 8.1E-09 1.7E-13 88.7 1.9 77 30-108 8-85 (267)
83 KOG1548 Transcription elongati 98.6 1.1E-07 2.4E-12 86.6 8.8 82 27-109 130-220 (382)
84 KOG4660 Protein Mei2, essentia 98.6 2.1E-08 4.5E-13 96.1 3.7 74 25-103 69-143 (549)
85 KOG0106 Alternative splicing f 98.6 4.7E-08 1E-12 84.9 4.4 70 32-109 2-72 (216)
86 KOG1995 Conserved Zn-finger pr 98.5 1.3E-07 2.9E-12 86.6 6.4 89 23-111 58-155 (351)
87 KOG0147 Transcriptional coacti 98.4 7.8E-08 1.7E-12 92.1 1.7 87 27-113 175-261 (549)
88 PF04059 RRM_2: RNA recognitio 98.4 2.6E-06 5.7E-11 65.2 8.5 77 32-108 2-85 (97)
89 KOG0151 Predicted splicing reg 98.4 1E-06 2.2E-11 86.7 7.7 84 25-108 168-255 (877)
90 KOG0120 Splicing factor U2AF, 98.3 9.8E-07 2.1E-11 85.2 5.6 90 24-113 282-372 (500)
91 KOG4211 Splicing factor hnRNP- 98.3 2.3E-06 4.9E-11 81.4 7.5 79 29-108 101-180 (510)
92 PF11608 Limkain-b1: Limkain b 98.1 1.3E-05 2.9E-10 59.2 6.6 68 32-109 3-76 (90)
93 PF08777 RRM_3: RNA binding mo 98.0 7.6E-06 1.6E-10 63.7 4.8 70 32-107 2-77 (105)
94 KOG0106 Alternative splicing f 98.0 6.4E-06 1.4E-10 71.7 4.6 77 26-110 94-171 (216)
95 KOG4210 Nuclear localization s 98.0 8E-06 1.7E-10 74.5 5.0 79 31-109 184-263 (285)
96 KOG1190 Polypyrimidine tract-b 98.0 8.5E-05 1.8E-09 69.4 11.7 76 31-111 297-374 (492)
97 KOG1457 RNA binding protein (c 97.9 7.3E-06 1.6E-10 71.0 3.5 64 27-94 206-269 (284)
98 PF14605 Nup35_RRM_2: Nup53/35 97.8 6.7E-05 1.5E-09 51.1 5.7 52 32-90 2-53 (53)
99 KOG4307 RNA binding protein RB 97.8 6.8E-05 1.5E-09 74.1 7.8 82 25-106 861-943 (944)
100 KOG1190 Polypyrimidine tract-b 97.8 2.8E-05 6.2E-10 72.5 5.0 74 29-108 26-102 (492)
101 KOG1855 Predicted RNA-binding 97.8 3.9E-05 8.4E-10 72.0 5.4 73 24-96 224-309 (484)
102 KOG0129 Predicted RNA-binding 97.8 9.5E-05 2.1E-09 70.9 8.1 67 27-94 255-327 (520)
103 KOG4206 Spliceosomal protein s 97.6 0.00019 4.1E-09 62.3 7.3 75 28-107 143-219 (221)
104 KOG0129 Predicted RNA-binding 97.6 0.00019 4.2E-09 68.8 7.8 80 28-107 367-451 (520)
105 COG5175 MOT2 Transcriptional r 97.5 0.00018 4E-09 65.8 6.1 81 30-110 113-203 (480)
106 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00056 1.2E-08 52.7 7.6 77 30-107 5-89 (100)
107 KOG1456 Heterogeneous nuclear 97.5 0.0012 2.6E-08 61.3 10.8 80 24-108 280-361 (494)
108 PF10309 DUF2414: Protein of u 97.2 0.0017 3.8E-08 45.5 7.0 57 29-93 3-62 (62)
109 KOG1365 RNA-binding protein Fu 97.2 0.00038 8.3E-09 64.7 4.7 78 31-109 280-361 (508)
110 KOG0128 RNA-binding protein SA 97.2 0.00021 4.6E-09 72.1 2.9 78 31-109 736-814 (881)
111 KOG2314 Translation initiation 97.1 0.0017 3.8E-08 63.1 8.1 78 29-107 56-141 (698)
112 KOG1365 RNA-binding protein Fu 97.1 0.00057 1.2E-08 63.6 4.1 78 30-108 160-241 (508)
113 PF08952 DUF1866: Domain of un 97.0 0.0017 3.7E-08 53.2 6.0 57 47-111 52-108 (146)
114 KOG1548 Transcription elongati 97.0 0.0029 6.4E-08 58.2 8.0 80 25-108 259-350 (382)
115 KOG3152 TBP-binding protein, a 97.0 0.00048 1E-08 60.9 2.5 72 30-101 73-157 (278)
116 KOG0112 Large RNA-binding prot 96.8 0.00026 5.6E-09 71.9 -0.5 88 19-107 360-448 (975)
117 KOG0128 RNA-binding protein SA 96.8 0.00015 3.2E-09 73.2 -2.3 70 30-99 666-735 (881)
118 KOG2202 U2 snRNP splicing fact 96.8 0.00047 1E-08 61.0 1.1 62 47-109 84-147 (260)
119 KOG1456 Heterogeneous nuclear 96.7 0.0071 1.5E-07 56.3 7.8 86 20-111 20-108 (494)
120 KOG0120 Splicing factor U2AF, 96.7 0.0044 9.5E-08 60.3 6.8 63 47-109 425-491 (500)
121 KOG0105 Alternative splicing f 96.6 0.018 3.8E-07 49.0 9.3 74 27-107 111-187 (241)
122 KOG2193 IGF-II mRNA-binding pr 96.5 0.0015 3.2E-08 61.6 2.3 77 32-114 2-80 (584)
123 KOG4676 Splicing factor, argin 96.4 0.0051 1.1E-07 57.5 5.2 77 31-107 7-86 (479)
124 PF15023 DUF4523: Protein of u 96.4 0.016 3.5E-07 47.2 7.3 79 23-108 78-160 (166)
125 KOG4307 RNA binding protein RB 96.3 0.0036 7.9E-08 62.3 3.6 83 24-107 427-511 (944)
126 KOG0115 RNA-binding protein p5 96.3 0.0037 8E-08 55.4 3.3 62 32-94 32-93 (275)
127 PF08675 RNA_bind: RNA binding 96.2 0.018 3.9E-07 42.7 5.9 54 32-94 10-63 (87)
128 KOG2416 Acinus (induces apopto 96.0 0.0064 1.4E-07 59.6 3.9 81 23-109 436-521 (718)
129 KOG1996 mRNA splicing factor [ 95.8 0.022 4.7E-07 51.6 6.2 63 45-107 300-364 (378)
130 KOG0112 Large RNA-binding prot 95.8 0.0095 2.1E-07 60.9 4.3 79 27-111 451-532 (975)
131 KOG2591 c-Mpl binding protein, 95.7 0.012 2.7E-07 57.3 4.4 73 28-107 172-249 (684)
132 KOG4210 Nuclear localization s 95.3 0.012 2.7E-07 53.7 2.8 83 29-111 86-169 (285)
133 KOG2135 Proteins containing th 95.1 0.012 2.6E-07 56.3 2.1 74 30-109 371-445 (526)
134 KOG2068 MOT2 transcription fac 94.9 0.011 2.4E-07 54.4 1.2 82 29-110 75-163 (327)
135 PF03880 DbpA: DbpA RNA bindin 94.5 0.14 3E-06 37.0 6.0 66 33-107 2-74 (74)
136 KOG4285 Mitotic phosphoprotein 94.0 0.25 5.4E-06 45.0 7.7 66 34-106 200-266 (350)
137 PF07576 BRAP2: BRCA1-associat 94.0 0.92 2E-05 35.5 10.0 60 33-94 15-75 (110)
138 PF04847 Calcipressin: Calcipr 93.7 0.22 4.8E-06 42.6 6.5 59 44-108 8-69 (184)
139 KOG2253 U1 snRNP complex, subu 93.2 0.048 1E-06 54.2 1.9 71 28-107 37-108 (668)
140 KOG4660 Protein Mei2, essentia 92.6 0.16 3.5E-06 49.7 4.5 80 29-108 359-471 (549)
141 KOG4574 RNA-binding protein (c 91.4 0.12 2.6E-06 52.9 2.3 71 32-108 299-372 (1007)
142 PF03467 Smg4_UPF3: Smg-4/UPF3 91.1 0.17 3.7E-06 42.9 2.6 81 29-109 5-97 (176)
143 PF11767 SET_assoc: Histone ly 89.7 1.5 3.3E-05 31.1 6.1 54 41-103 10-64 (66)
144 KOG4483 Uncharacterized conser 87.5 1.3 2.7E-05 42.1 5.6 66 29-101 389-455 (528)
145 KOG2318 Uncharacterized conser 83.3 4.5 9.7E-05 40.2 7.4 79 28-106 171-304 (650)
146 KOG4454 RNA binding protein (R 82.8 0.22 4.9E-06 43.5 -1.4 67 25-92 74-144 (267)
147 PF07530 PRE_C2HC: Associated 82.5 3.9 8.5E-05 29.1 5.1 60 46-108 2-63 (68)
148 KOG4410 5-formyltetrahydrofola 81.0 4.7 0.0001 36.7 6.2 48 30-83 329-377 (396)
149 smart00596 PRE_C2HC PRE_C2HC d 79.7 4 8.7E-05 29.2 4.3 60 46-108 2-63 (69)
150 KOG4676 Splicing factor, argin 74.6 0.42 9.1E-06 45.1 -2.4 66 29-98 149-214 (479)
151 KOG0804 Cytoplasmic Zn-finger 74.1 12 0.00026 36.2 7.0 62 31-94 74-136 (493)
152 PF10567 Nab6_mRNP_bdg: RNA-re 72.3 7.1 0.00015 35.7 4.9 82 28-109 12-107 (309)
153 PF03468 XS: XS domain; Inter 71.6 4.5 9.7E-05 31.9 3.1 45 44-91 30-75 (116)
154 KOG4019 Calcineurin-mediated s 64.0 6.7 0.00014 33.4 2.8 75 29-109 8-89 (193)
155 KOG2295 C2H2 Zn-finger protein 62.9 0.99 2.1E-05 44.4 -2.6 65 28-92 228-292 (648)
156 COG0724 RNA-binding proteins ( 62.2 12 0.00025 32.0 4.2 66 25-90 219-284 (306)
157 PRK11634 ATP-dependent RNA hel 61.3 72 0.0016 32.5 10.2 70 31-109 486-562 (629)
158 KOG4365 Uncharacterized conser 59.8 1.6 3.5E-05 41.9 -1.7 76 32-108 4-80 (572)
159 PF15513 DUF4651: Domain of un 57.4 25 0.00054 24.6 4.2 18 46-63 9-26 (62)
160 PF00403 HMA: Heavy-metal-asso 54.1 63 0.0014 21.5 6.2 55 33-93 1-59 (62)
161 PRK11901 hypothetical protein; 54.0 25 0.00054 32.7 5.0 58 38-97 249-308 (327)
162 PF07292 NID: Nmi/IFP 35 domai 53.4 16 0.00035 27.4 3.0 32 76-107 1-34 (88)
163 KOG2891 Surface glycoprotein [ 52.4 13 0.00028 33.9 2.8 36 29-64 147-194 (445)
164 PF02714 DUF221: Domain of unk 52.2 14 0.00031 33.8 3.2 32 76-108 1-32 (325)
165 PF08206 OB_RNB: Ribonuclease 46.7 2.5 5.5E-05 28.9 -2.1 37 72-108 7-44 (58)
166 COG5193 LHP1 La protein, small 45.2 9.1 0.0002 36.5 0.7 64 28-91 171-244 (438)
167 KOG4213 RNA-binding protein La 44.4 30 0.00065 29.6 3.6 58 31-94 111-171 (205)
168 KOG0226 RNA-binding proteins [ 43.2 17 0.00036 32.7 2.0 79 28-107 93-175 (290)
169 PRK10905 cell division protein 42.8 34 0.00074 31.8 4.0 62 35-97 248-310 (328)
170 PRK14548 50S ribosomal protein 42.4 98 0.0021 22.9 5.7 55 36-93 25-81 (84)
171 PF09707 Cas_Cas2CT1978: CRISP 41.9 61 0.0013 24.2 4.6 48 31-81 25-72 (86)
172 PF11411 DNA_ligase_IV: DNA li 39.9 22 0.00047 22.1 1.6 16 41-56 19-34 (36)
173 KOG2193 IGF-II mRNA-binding pr 39.3 3.9 8.5E-05 39.2 -2.6 76 29-108 78-155 (584)
174 TIGR03636 L23_arch archaeal ri 38.2 1.4E+02 0.003 21.8 5.9 57 34-93 16-74 (77)
175 PF13046 DUF3906: Protein of u 37.6 39 0.00084 23.8 2.7 35 42-78 29-63 (64)
176 PF07292 NID: Nmi/IFP 35 domai 37.6 19 0.00041 27.0 1.3 25 28-52 49-73 (88)
177 PF04026 SpoVG: SpoVG; InterP 37.1 61 0.0013 24.0 3.9 26 57-82 2-27 (84)
178 KOG3424 40S ribosomal protein 36.9 1.3E+02 0.0027 24.0 5.7 48 41-89 33-85 (132)
179 TIGR01873 cas_CT1978 CRISPR-as 34.7 37 0.0008 25.4 2.4 49 31-82 25-74 (87)
180 KOG0156 Cytochrome P450 CYP2 s 33.6 71 0.0015 31.5 4.9 59 35-102 36-97 (489)
181 PRK01178 rps24e 30S ribosomal 33.4 99 0.0022 23.7 4.7 47 41-88 29-80 (99)
182 KOG4008 rRNA processing protei 33.0 36 0.00078 30.3 2.4 34 28-61 37-70 (261)
183 PRK11558 putative ssRNA endonu 32.3 82 0.0018 24.1 4.0 50 31-83 27-76 (97)
184 PF15407 Spo7_2_N: Sporulation 30.9 7.2 0.00016 27.7 -1.8 40 15-54 11-50 (67)
185 cd04889 ACT_PDH-BS-like C-term 30.1 1.6E+02 0.0034 19.0 6.2 43 46-91 13-56 (56)
186 KOG0921 Dosage compensation co 29.7 3.8E+02 0.0083 29.0 9.4 14 77-90 1085-1098(1282)
187 PRK10629 EnvZ/OmpR regulon mod 29.6 2.8E+02 0.006 22.1 6.9 67 33-107 37-108 (127)
188 PRK13259 regulatory protein Sp 29.1 88 0.0019 23.8 3.7 26 57-82 2-27 (94)
189 COG5353 Uncharacterized protei 28.8 2.7E+02 0.0059 23.1 6.7 54 32-85 88-154 (161)
190 KOG3432 Vacuolar H+-ATPase V1 28.8 78 0.0017 24.8 3.4 26 39-64 41-66 (121)
191 PF00398 RrnaAD: Ribosomal RNA 28.5 1.1E+02 0.0024 27.2 4.9 24 30-53 96-119 (262)
192 KOG2236 Uncharacterized conser 27.6 6E+02 0.013 25.0 11.3 12 48-59 247-258 (483)
193 COG5638 Uncharacterized conser 27.4 81 0.0017 30.4 3.9 41 24-64 139-184 (622)
194 cd04908 ACT_Bt0572_1 N-termina 26.5 2.1E+02 0.0045 19.3 7.7 47 44-94 14-61 (66)
195 PF08544 GHMP_kinases_C: GHMP 26.4 2E+02 0.0044 20.0 5.3 42 46-93 37-79 (85)
196 PRK11230 glycolate oxidase sub 26.0 1.8E+02 0.0038 28.8 6.3 48 44-92 202-253 (499)
197 PF08734 GYD: GYD domain; Int 25.5 2.6E+02 0.0056 20.7 5.7 44 45-92 22-66 (91)
198 COG4010 Uncharacterized protei 24.6 1.4E+02 0.003 24.7 4.2 47 38-94 118-164 (170)
199 PF07876 Dabb: Stress responsi 24.5 2.7E+02 0.006 20.0 7.4 57 36-92 6-73 (97)
200 PF14111 DUF4283: Domain of un 24.0 51 0.0011 26.3 1.8 72 32-108 16-90 (153)
201 PF05189 RTC_insert: RNA 3'-te 23.9 1.5E+02 0.0031 22.4 4.2 49 33-81 12-65 (103)
202 PHA03008 hypothetical protein; 23.7 1.4E+02 0.003 26.1 4.3 41 24-64 14-54 (234)
203 PF14401 RLAN: RimK-like ATPgr 23.3 1.7E+02 0.0037 24.1 4.7 62 28-89 84-146 (153)
204 PF01071 GARS_A: Phosphoribosy 23.1 2E+02 0.0043 24.8 5.3 45 44-92 25-69 (194)
205 PF08503 DapH_N: Tetrahydrodip 23.1 2.6E+02 0.0056 20.7 5.2 29 77-105 44-72 (83)
206 KOG3702 Nuclear polyadenylated 22.9 70 0.0015 32.6 2.7 79 24-102 504-582 (681)
207 PF10281 Ish1: Putative stress 22.3 74 0.0016 19.5 1.9 18 42-59 3-20 (38)
208 cd04883 ACT_AcuB C-terminal AC 20.4 2.8E+02 0.0061 18.6 6.3 49 44-94 14-65 (72)
209 COG2088 SpoVG Uncharacterized 20.3 1.3E+02 0.0029 22.5 3.1 27 57-83 2-28 (95)
210 CHL00123 rps6 ribosomal protei 20.0 3.9E+02 0.0084 20.0 6.1 60 31-92 8-81 (97)
No 1
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=6.8e-24 Score=182.26 Aligned_cols=92 Identities=84% Similarity=1.433 Sum_probs=86.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCcee
Q 023475 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA 102 (281)
Q Consensus 23 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i 102 (281)
+.+..|++.+|||||+|+|++.+|+|+++|++||+|++++||.|+.|+++|||+||+|.|.|+|++||+..+.+|+||+.
T Consensus 4 ~~~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~a 83 (247)
T KOG0149|consen 4 NNPFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKA 83 (247)
T ss_pred CCCCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccC-CCCCC
Q 023475 103 NCNLASL-GRPRP 114 (281)
Q Consensus 103 ~V~~a~~-~~~~~ 114 (281)
+|++|.. .+.|.
T Consensus 84 NcnlA~lg~~pR~ 96 (247)
T KOG0149|consen 84 NCNLASLGGKPRP 96 (247)
T ss_pred ccchhhhcCccCC
Confidence 9999986 44443
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=1.3e-19 Score=149.06 Aligned_cols=84 Identities=38% Similarity=0.707 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|++||+.++ .+|+|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999999999999999999999999999999999876 679999999999
Q ss_pred ccCCC
Q 023475 107 ASLGR 111 (281)
Q Consensus 107 a~~~~ 111 (281)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 96543
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=5.1e-18 Score=158.21 Aligned_cols=85 Identities=24% Similarity=0.340 Sum_probs=79.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
.++...++|||+||++++||++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++||++|+ .+|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 456678999999999999999999999999999999999999999999999999999999999999887 6699999999
Q ss_pred EeccCC
Q 023475 105 NLASLG 110 (281)
Q Consensus 105 ~~a~~~ 110 (281)
++++..
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998643
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.73 E-value=4.3e-17 Score=151.77 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
+....+|||+||++++++++|+++|++||.|++|+|++|+.|+++||||||+|++.++|.+||+.|+ ..|+||+|+|.+
T Consensus 266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 266 DGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4455689999999999999999999999999999999999999999999999999999999999987 559999999999
Q ss_pred ccCCCC
Q 023475 107 ASLGRP 112 (281)
Q Consensus 107 a~~~~~ 112 (281)
+..+..
T Consensus 346 ~~~~~~ 351 (352)
T TIGR01661 346 KTNKAY 351 (352)
T ss_pred ccCCCC
Confidence 976543
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=1.5e-16 Score=148.33 Aligned_cols=85 Identities=24% Similarity=0.411 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCC--ceeEE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG--RRANC 104 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G--~~i~V 104 (281)
+...++|||+||++++||++|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.|+ .+|++ ++|+|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999987 44655 68999
Q ss_pred EeccCCCC
Q 023475 105 NLASLGRP 112 (281)
Q Consensus 105 ~~a~~~~~ 112 (281)
+++....+
T Consensus 270 ~~a~~~~~ 277 (346)
T TIGR01659 270 RLAEEHGK 277 (346)
T ss_pred EECCcccc
Confidence 99875433
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=8.3e-17 Score=149.87 Aligned_cols=82 Identities=29% Similarity=0.453 Sum_probs=76.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
..++|||+|||.+++|++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.++ ..|.|++|+|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35799999999999999999999999999999999999999999999999999999999999987 55999999999986
Q ss_pred CCC
Q 023475 109 LGR 111 (281)
Q Consensus 109 ~~~ 111 (281)
...
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 543
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.69 E-value=7.7e-16 Score=152.37 Aligned_cols=86 Identities=31% Similarity=0.519 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||++++++++|+++|++||+|++|+|++| .++++||||||+|++.++|++||++++ .+|+|++|+|++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 445678999999999999999999999999999999999 569999999999999999999999977 669999999999
Q ss_pred ccCCCCCC
Q 023475 107 ASLGRPRP 114 (281)
Q Consensus 107 a~~~~~~~ 114 (281)
|..+..+.
T Consensus 361 a~~k~~~~ 368 (562)
T TIGR01628 361 AQRKEQRR 368 (562)
T ss_pred ccCcHHHH
Confidence 98765543
No 8
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=2.2e-16 Score=141.53 Aligned_cols=85 Identities=29% Similarity=0.552 Sum_probs=76.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCcee
Q 023475 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (281)
..+.....++|+|.|||+...|-||+.+|++||+|++|+||.+. .-+|||+||+|++.++|++|-++|+ .+|+||+|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 33445567899999999999999999999999999999999874 6789999999999999999999988 55999999
Q ss_pred EEEeccCC
Q 023475 103 NCNLASLG 110 (281)
Q Consensus 103 ~V~~a~~~ 110 (281)
+|+.|+.+
T Consensus 167 EVn~ATar 174 (376)
T KOG0125|consen 167 EVNNATAR 174 (376)
T ss_pred EEeccchh
Confidence 99999854
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.2e-15 Score=133.91 Aligned_cols=79 Identities=34% Similarity=0.540 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
..++|+||||||+.-++|++||+.|+.||.|.+|+|.+| +||+||.|+++|+|.+||..+| .+|.|..++|.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 346899999999999999999999999999999999998 5799999999999999999976 779999999999
Q ss_pred ccCCCC
Q 023475 107 ASLGRP 112 (281)
Q Consensus 107 a~~~~~ 112 (281)
.++...
T Consensus 235 GKe~~~ 240 (321)
T KOG0148|consen 235 GKEGDD 240 (321)
T ss_pred cccCCC
Confidence 875543
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=4.5e-15 Score=137.80 Aligned_cols=82 Identities=26% Similarity=0.371 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
+...+++.|||+||..++|||.|+++|++||.|++|+.++| ||||+|.++++|.+||+.+| ++|+|..|+|
T Consensus 254 d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEv 325 (506)
T KOG0117|consen 254 DTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEV 325 (506)
T ss_pred hhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEE
Confidence 34568899999999999999999999999999999998877 99999999999999999988 6799999999
Q ss_pred EeccCCCCCCc
Q 023475 105 NLASLGRPRPQ 115 (281)
Q Consensus 105 ~~a~~~~~~~~ 115 (281)
.+|++..+++.
T Consensus 326 tLAKP~~k~k~ 336 (506)
T KOG0117|consen 326 TLAKPVDKKKK 336 (506)
T ss_pred EecCChhhhcc
Confidence 99986655443
No 11
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.5e-16 Score=145.50 Aligned_cols=108 Identities=29% Similarity=0.426 Sum_probs=88.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHH
Q 023475 6 IPGPGSGSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEA 85 (281)
Q Consensus 6 ~~~~~~~sssss~~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~ 85 (281)
.++.+.+++.+-.-........|.+.-+|||+-||..++|+|||++|++||.|.+|.|++||.|+.+||||||+|.++++
T Consensus 9 ~~~~~~gs~~~~~~~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~ 88 (510)
T KOG0144|consen 9 PPSPCGGSSLADNGSLDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKE 88 (510)
T ss_pred CCCCCCCcchhhcCCCCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHH
Confidence 34455555555333333444556778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC--CCcCC--ceeEEEeccCCCCC
Q 023475 86 ARRACADPT--PFIDG--RRANCNLASLGRPR 113 (281)
Q Consensus 86 A~~Ai~~~~--~~i~G--~~i~V~~a~~~~~~ 113 (281)
|.+|+.+|+ ++|.| ..|.|++|+.++.|
T Consensus 89 a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 89 ADEAINALHNQKTLPGMHHPVQVKYADGERER 120 (510)
T ss_pred HHHHHHHhhcccccCCCCcceeecccchhhhc
Confidence 999999965 55766 67889999866555
No 12
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.3e-15 Score=131.94 Aligned_cols=83 Identities=29% Similarity=0.423 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~~ 106 (281)
..+.++|-|.||+.+++|++|+++|.+||.|.+|.|.+|+.||.+||||||+|.++++|.+||+.|+.. ++.-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 336789999999999999999999999999999999999999999999999999999999999999865 8889999999
Q ss_pred ccCC
Q 023475 107 ASLG 110 (281)
Q Consensus 107 a~~~ 110 (281)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9653
No 13
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=5.7e-16 Score=110.29 Aligned_cols=69 Identities=36% Similarity=0.689 Sum_probs=64.2
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 34 lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
|||+|||.++++++|+++|++||.|+.+++..+ .+++.+++|||+|++.++|++||+.++ ..|+++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 568999999999999999999999866 669998875
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=1.1e-14 Score=143.10 Aligned_cols=75 Identities=24% Similarity=0.386 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcC--CCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQF--GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~--G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
...++|||+||+++++|++|+++|++| |+|++|++++ +||||+|++.++|++||+++| .+|+|+.|+|+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 456889999999999999999999999 9999998764 499999999999999999877 67999999999
Q ss_pred eccCCC
Q 023475 106 LASLGR 111 (281)
Q Consensus 106 ~a~~~~ 111 (281)
++++..
T Consensus 303 ~Akp~~ 308 (578)
T TIGR01648 303 LAKPVD 308 (578)
T ss_pred EccCCC
Confidence 997643
No 15
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=1.7e-15 Score=119.37 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
..++++|||+||++.++||.|.++|+++|+|+.|.+-.|+.+....|||||+|.+.++|+.||+-++ ..|+.+.|.|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3478999999999999999999999999999999999999999999999999999999999999987 559999999998
Q ss_pred cc
Q 023475 107 AS 108 (281)
Q Consensus 107 a~ 108 (281)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 74
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=4.5e-15 Score=131.52 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=69.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (281)
.++|||+||+++++|++|+++|+.||+|++|+|++|+. ++|||||+|+++++|++||...+..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999999853 57999999999999999997555789999999999863
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=2.3e-15 Score=132.06 Aligned_cols=82 Identities=40% Similarity=0.605 Sum_probs=77.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (281)
...|||+.|..+++-|+||+.|.+||+|.+++|++|..|+++|||+||.|-+.++|++||+.|| .+|.+|.|+-+||.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 5689999999999999999999999999999999999999999999999999999999999998 669999999999987
Q ss_pred CCC
Q 023475 110 GRP 112 (281)
Q Consensus 110 ~~~ 112 (281)
|..
T Consensus 142 Kp~ 144 (321)
T KOG0148|consen 142 KPS 144 (321)
T ss_pred Ccc
Confidence 653
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=3.3e-15 Score=107.14 Aligned_cols=69 Identities=35% Similarity=0.645 Sum_probs=63.6
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 34 lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
|||+|||+++++++|+++|+.||.|.++++.++++ ++.+++|||+|.+.++|++|++.++ ..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 8999999999999999999999987 679999875
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=5.6e-15 Score=145.60 Aligned_cols=81 Identities=19% Similarity=0.384 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+||+.++++++|+++|++||+|++|+|++|+.++++||||||+|++.++|.+||+.+| .+|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 346799999999999999999999999999999999999999999999999999999999999988 5599999999998
Q ss_pred cC
Q 023475 108 SL 109 (281)
Q Consensus 108 ~~ 109 (281)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 64
No 20
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=4.3e-15 Score=125.86 Aligned_cols=87 Identities=29% Similarity=0.528 Sum_probs=79.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
-+-+...+|-|-||...++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|++||+.|+ .+|+|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 334456799999999999999999999999999999999999999999999999999999999999988 6699999999
Q ss_pred EeccCCCC
Q 023475 105 NLASLGRP 112 (281)
Q Consensus 105 ~~a~~~~~ 112 (281)
.+|+-.+.
T Consensus 88 q~arygr~ 95 (256)
T KOG4207|consen 88 QMARYGRP 95 (256)
T ss_pred hhhhcCCC
Confidence 99874443
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.58 E-value=6.4e-15 Score=145.15 Aligned_cols=80 Identities=33% Similarity=0.591 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...|+|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|++||+.++ ..|+|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 356899999999999999999999999999999999999999999999999999999999999987 5599999999865
Q ss_pred c
Q 023475 108 S 108 (281)
Q Consensus 108 ~ 108 (281)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 22
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=5e-15 Score=122.53 Aligned_cols=75 Identities=28% Similarity=0.454 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
-.++||||||+.++++.||+.+|.+||.|..|+|.+. ..|||||+|++..+|++|+..|+ +.|+|.+|.|++.+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4789999999999999999999999999999999775 47999999999999999999998 66999999999986
Q ss_pred C
Q 023475 109 L 109 (281)
Q Consensus 109 ~ 109 (281)
-
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 3
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.56 E-value=1e-14 Score=144.44 Aligned_cols=77 Identities=29% Similarity=0.487 Sum_probs=73.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 023475 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (281)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (281)
+|||+||+.++||++|+++|++||.|++|+|++|+.|++++|||||+|.+.++|++||+.++ ..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 79999999999999999999999999999999999999999999999999999999999987 449999999998753
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2e-15 Score=139.65 Aligned_cols=87 Identities=25% Similarity=0.403 Sum_probs=78.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCC--CcCC--ceeEEE
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP--FIDG--RRANCN 105 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~--~i~G--~~i~V~ 105 (281)
..++|||+.|++.++|+|++++|++||.|++|.|++|.. +.+||||||+|+++|.|..||+.+|+ +++| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 378999999999999999999999999999999999987 99999999999999999999999883 3554 789999
Q ss_pred eccCCCCCCccc
Q 023475 106 LASLGRPRPQVL 117 (281)
Q Consensus 106 ~a~~~~~~~~~~ 117 (281)
+|+.++.+..++
T Consensus 202 FADtqkdk~~~~ 213 (510)
T KOG0144|consen 202 FADTQKDKDGKR 213 (510)
T ss_pred ecccCCCchHHH
Confidence 999888776544
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.55 E-value=3e-14 Score=137.42 Aligned_cols=83 Identities=25% Similarity=0.393 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEec
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (281)
+...++|||+||+.++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+..+..|.|+.|.|.++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34578999999999999999999999999999999999999999999999999999999999987667899999999987
Q ss_pred cCC
Q 023475 108 SLG 110 (281)
Q Consensus 108 ~~~ 110 (281)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 543
No 26
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.1e-14 Score=127.55 Aligned_cols=81 Identities=33% Similarity=0.620 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....+||||+-|+.+++|++|++.|++||.|+.|.|++|+.|+++||||||+|+++.+.++|.+.-+ ..|+|++|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 4567999999999999999999999999999999999999999999999999999999999999865 669999999987
Q ss_pred cc
Q 023475 107 AS 108 (281)
Q Consensus 107 a~ 108 (281)
-.
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 64
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=2.1e-14 Score=141.21 Aligned_cols=78 Identities=29% Similarity=0.431 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCc-CCceeEEEe
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI-DGRRANCNL 106 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i-~G~~i~V~~ 106 (281)
...++|||+||+++++|++|+++|++||.|.+|+|++| .++++||||||+|.+.++|++||+.|+ .+| .++.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 35689999999999999999999999999999999999 679999999999999999999999987 445 466665544
Q ss_pred c
Q 023475 107 A 107 (281)
Q Consensus 107 a 107 (281)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 3
No 28
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.1e-15 Score=125.29 Aligned_cols=84 Identities=30% Similarity=0.470 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
.+.++||||+|..+++|..|...|..||.|++|++..|-.++++|||+||+|+..|+|..||..+| .+|.||.|+|++|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 356899999999999999999999999999999999999999999999999999999999999988 7799999999999
Q ss_pred cCCCC
Q 023475 108 SLGRP 112 (281)
Q Consensus 108 ~~~~~ 112 (281)
++.+-
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 86543
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.52 E-value=8.2e-14 Score=136.04 Aligned_cols=83 Identities=23% Similarity=0.454 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+||+.++++++|+++|+.||.|+.+.|++++.+++++|||||+|.+.++|++||+.|+ ..|.|+.|+|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999999999999999999999999999999999987 5599999999999
Q ss_pred cCCC
Q 023475 108 SLGR 111 (281)
Q Consensus 108 ~~~~ 111 (281)
....
T Consensus 373 ~~~~ 376 (509)
T TIGR01642 373 CVGA 376 (509)
T ss_pred ccCC
Confidence 7543
No 30
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1.1e-13 Score=120.91 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (281)
...+|||+||++++||++|+++|+.||+|++|+|++| ++.++||||+|+++++|+.||...+..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 3478999999999999999999999999999999998 456689999999999999999877788999999998864
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=1e-13 Score=133.65 Aligned_cols=78 Identities=33% Similarity=0.627 Sum_probs=74.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
.++|||+||+.++++++|+++|++||.|+.|+|++++.+++++|||||+|.+.++|++||+.|+ ..|.|+.|+|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999999999999999999999999999999987 55999999999987
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.5e-13 Score=120.22 Aligned_cols=86 Identities=27% Similarity=0.412 Sum_probs=79.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCC-CcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~G~~i~V 104 (281)
..++..++|.|.-||.++|+|||+.+|...|+|++|++++||.+|.+.||+||.|-++++|++||..+|. .|..|.|+|
T Consensus 36 ~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 36 DTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred CcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 3456678899999999999999999999999999999999999999999999999999999999999885 499999999
Q ss_pred EeccCCC
Q 023475 105 NLASLGR 111 (281)
Q Consensus 105 ~~a~~~~ 111 (281)
++|++..
T Consensus 116 SyARPSs 122 (360)
T KOG0145|consen 116 SYARPSS 122 (360)
T ss_pred EeccCCh
Confidence 9997543
No 33
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=5.5e-15 Score=122.95 Aligned_cols=80 Identities=29% Similarity=0.536 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~~a~ 108 (281)
++.-||||||+.++||.||.-+|++||+|++|.|++|+.||+++||||++|+|-.+..-||..+|.+ |.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 4567999999999999999999999999999999999999999999999999999999999998855 999999998765
Q ss_pred C
Q 023475 109 L 109 (281)
Q Consensus 109 ~ 109 (281)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 3
No 34
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=1.4e-13 Score=96.82 Aligned_cols=71 Identities=31% Similarity=0.566 Sum_probs=65.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
+|||+||+.++++++|+++|++||.|.++++..++ +.++++|||+|.+.++|++|++.++ ..|.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7789999999999999999999977 66999998874
No 35
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.49 E-value=4.2e-14 Score=129.24 Aligned_cols=104 Identities=39% Similarity=0.696 Sum_probs=88.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (281)
+.++|||++|+|++++|.|++.|++||+|.+|.|++|+.++++|||+||+|++.+.+.++|....+.|+|+.|+++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67999999999999999999999999999999999999999999999999999999999999988999999999999976
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCC
Q 023475 110 GRPRPQVLYGRLRPATLFSGSTQAT 134 (281)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~g~~~~~ 134 (281)
+........ ..+..+.++|++...
T Consensus 85 r~~~~~~~~-~~~tkkiFvGG~~~~ 108 (311)
T KOG4205|consen 85 REDQTKVGR-HLRTKKIFVGGLPPD 108 (311)
T ss_pred ccccccccc-ccceeEEEecCcCCC
Confidence 554332221 124456666665543
No 36
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=9.9e-14 Score=130.33 Aligned_cols=79 Identities=14% Similarity=0.286 Sum_probs=70.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCH--HHHHHHHhCCC-CCcCCceeE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP--EAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~--~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
......+||||||.+++++++|+.+|+.||.|++|.|++. || ||||||+|.+. +++.+||..|+ .+++|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 3445689999999999999999999999999999999954 56 99999999987 68999999988 559999999
Q ss_pred EEeccC
Q 023475 104 CNLASL 109 (281)
Q Consensus 104 V~~a~~ 109 (281)
|+.|++
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 999974
No 37
>smart00360 RRM RNA recognition motif.
Probab=99.48 E-value=1.7e-13 Score=95.93 Aligned_cols=70 Identities=36% Similarity=0.620 Sum_probs=65.0
Q ss_pred EcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 36 VGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 36 VgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
|+||+.++++++|+++|+.||.|.++++..++.+++++++|||+|.+.++|++|++.++ ..+++++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988889999999999999999999999987 66899998874
No 38
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.2e-13 Score=128.51 Aligned_cols=80 Identities=28% Similarity=0.442 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCc-CCceeEEEe
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI-DGRRANCNL 106 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i-~G~~i~V~~ 106 (281)
..-|.||||.||.++.|++|.-+|++.|+|-+++|+.|+.+|.+||||||+|.+.++|++||+.+| ++| .||.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 467899999999999999999999999999999999999999999999999999999999999976 665 688888776
Q ss_pred cc
Q 023475 107 AS 108 (281)
Q Consensus 107 a~ 108 (281)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 54
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.47 E-value=2.1e-13 Score=119.37 Aligned_cols=78 Identities=29% Similarity=0.628 Sum_probs=75.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
.++|||+||+.++++++|+++|++||.|..|.|..|+.+++++|||||+|.+.++|.+||+.++ ..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999999899999999999999999999999988 66999999999975
No 40
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.44 E-value=1.7e-13 Score=130.28 Aligned_cols=81 Identities=32% Similarity=0.592 Sum_probs=77.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~ 110 (281)
++||||||+.+++||+|.++|+..|.|.+++++.|+.||++|||+|++|.+.++|++|++.|| .++.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999998 6799999999999755
Q ss_pred CC
Q 023475 111 RP 112 (281)
Q Consensus 111 ~~ 112 (281)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=1.8e-13 Score=120.14 Aligned_cols=87 Identities=28% Similarity=0.393 Sum_probs=80.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~ 103 (281)
..+..+.|+|||-.||.+..+.||...|-.||.|++.||..|+.|..+|+|+||.|++..+|+.||..+|.. |.-|+|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 345567899999999999999999999999999999999999999999999999999999999999999965 9999999
Q ss_pred EEeccCCC
Q 023475 104 CNLASLGR 111 (281)
Q Consensus 104 V~~a~~~~ 111 (281)
|.+.++++
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 99975544
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=3e-13 Score=112.69 Aligned_cols=80 Identities=29% Similarity=0.391 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCC-CcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~G~~i~V~~a 107 (281)
....+|||+||+..++++.|.++|-+.|.|+++.+.+|+.+...+|||||+|.++|+|+-||+.++. .|.||+|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3557999999999999999999999999999999999999999999999999999999999999984 499999999999
Q ss_pred c
Q 023475 108 S 108 (281)
Q Consensus 108 ~ 108 (281)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 43
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=6.4e-13 Score=105.81 Aligned_cols=88 Identities=24% Similarity=0.362 Sum_probs=80.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
|.....-..|||.++..+.+|++|.+.|..||+|+.|.|.+|+.||-.||||+|+|++.++|++||..+| ..|.+..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 3344456789999999999999999999999999999999999999999999999999999999999988 669999999
Q ss_pred EEeccCCCC
Q 023475 104 CNLASLGRP 112 (281)
Q Consensus 104 V~~a~~~~~ 112 (281)
|.|+..+.+
T Consensus 146 VDw~Fv~gp 154 (170)
T KOG0130|consen 146 VDWCFVKGP 154 (170)
T ss_pred EEEEEecCC
Confidence 999986554
No 44
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=1.4e-12 Score=99.38 Aligned_cols=88 Identities=19% Similarity=0.339 Sum_probs=75.9
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cC
Q 023475 20 QYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-ID 98 (281)
Q Consensus 20 ~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~ 98 (281)
...+.-...+.++-|||.|||+++|.|++.++|.+||.|..|+|-..+. .||-|||.|++..+|++||+.|... ++
T Consensus 7 ~~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 7 KKQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred ccCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccC
Confidence 3444455566788999999999999999999999999999999977654 5899999999999999999998855 99
Q ss_pred CceeEEEeccCC
Q 023475 99 GRRANCNLASLG 110 (281)
Q Consensus 99 G~~i~V~~a~~~ 110 (281)
++.|.|-+-...
T Consensus 84 ~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 84 NRYLVVLYYQPE 95 (124)
T ss_pred CceEEEEecCHH
Confidence 999999887644
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=1.6e-12 Score=91.81 Aligned_cols=73 Identities=32% Similarity=0.603 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCceeEEEe
Q 023475 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNL 106 (281)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~~ 106 (281)
+|+|+||+.++++++|+++|+.+|.|..+.+..++.+ +.+++|||+|.+.++|+.|++.++.. +++++|.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988764 77999999999999999999998755 9999998864
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.40 E-value=4.8e-13 Score=118.62 Aligned_cols=71 Identities=30% Similarity=0.594 Sum_probs=67.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCceeEEEeccCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNLASLG 110 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~~a~~~ 110 (281)
.+|||||||.++++.+|+.+|++||+|++|+|+++ |+||+.+|...++.||..|++. |+|..|+|+.++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 58999999999999999999999999999999987 9999999999999999998854 99999999999766
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.40 E-value=1.4e-12 Score=127.06 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 28 DTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 28 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
....++|||+||++ ++++++|+++|+.||.|++|+|++++ +|||||+|.+.++|++||+.|+ ..|.|++|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 44678999999998 69999999999999999999999873 6899999999999999999877 56999999999
Q ss_pred eccCC
Q 023475 106 LASLG 110 (281)
Q Consensus 106 ~a~~~ 110 (281)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98654
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.37 E-value=1.6e-11 Score=112.43 Aligned_cols=85 Identities=32% Similarity=0.591 Sum_probs=79.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (281)
..++|||++|+.+++|++|++.|++||.|.++.++.|+.+.++|||+||+|++++++++++...-++|+++.++|+.|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 46799999999999999999999999999999999999999999999999999999999999988999999999999987
Q ss_pred CCCCC
Q 023475 110 GRPRP 114 (281)
Q Consensus 110 ~~~~~ 114 (281)
+....
T Consensus 176 k~~~~ 180 (311)
T KOG4205|consen 176 KEVMQ 180 (311)
T ss_pred hhhcc
Confidence 65543
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.9e-12 Score=122.98 Aligned_cols=87 Identities=33% Similarity=0.524 Sum_probs=78.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCC----C-C--Cc
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP----T-P--FI 97 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~----~-~--~i 97 (281)
.+.....++|||+||++++||++|.++|++||+|..+.|++++.|++++|.|||.|.+.++|.+||+.- . . .|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 455556789999999999999999999999999999999999999999999999999999999999875 1 2 38
Q ss_pred CCceeEEEeccCCC
Q 023475 98 DGRRANCNLASLGR 111 (281)
Q Consensus 98 ~G~~i~V~~a~~~~ 111 (281)
+||.|+|.+|..++
T Consensus 366 ~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 366 DGRLLKVTLAVTRK 379 (678)
T ss_pred eccEEeeeeccchH
Confidence 99999999997554
No 50
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.37 E-value=2.3e-12 Score=125.54 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=67.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCC--C-CCcCCceeEEEec
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP--T-PFIDGRRANCNLA 107 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~--~-~~i~G~~i~V~~a 107 (281)
+++|||+||+++++|++|+++|++||.|++|+|+++ |+||||+|++.++|++||+.+ + ..|+|+.|+|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 579999999999999999999999999999999864 579999999999999999863 3 5699999999999
Q ss_pred cCCC
Q 023475 108 SLGR 111 (281)
Q Consensus 108 ~~~~ 111 (281)
..++
T Consensus 76 ~~~~ 79 (481)
T TIGR01649 76 TSQE 79 (481)
T ss_pred CCcc
Confidence 7543
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=8.2e-12 Score=104.46 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+|||.+|.|.+|+++|.|||.|.+|+|... -....||||+|++..+|+.||..-+ -.++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35689999999999999999999999999999987433 3346799999999999999999976 4599999999999
Q ss_pred cCCC
Q 023475 108 SLGR 111 (281)
Q Consensus 108 ~~~~ 111 (281)
...+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 6554
No 52
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=7.6e-12 Score=90.25 Aligned_cols=61 Identities=30% Similarity=0.513 Sum_probs=54.3
Q ss_pred HHHHHHHHh----cCCCEeEEE-EeeCCCC--CCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 45 SETMRRYFE----QFGEILEAV-VITDKNT--GRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 45 e~~L~~~F~----~~G~I~~v~-v~~d~~t--g~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
+++|+++|+ +||.|.+|. |+.++.+ +++|||+||+|.+.++|.+||+.|+ ..+.|+.|+|+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678889998 999999995 7788777 8999999999999999999999977 66999999873
No 53
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.8e-11 Score=107.33 Aligned_cols=87 Identities=26% Similarity=0.378 Sum_probs=79.7
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCce
Q 023475 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRR 101 (281)
Q Consensus 23 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~ 101 (281)
+-+-.+.....|||=||..+++|..|+.+|..||.|..|+|++|..|.+.|||+||+..+-++|..||..||.. +.+|.
T Consensus 270 ~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rv 349 (360)
T KOG0145|consen 270 NLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 349 (360)
T ss_pred ccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceE
Confidence 44555667789999999999999999999999999999999999999999999999999999999999999855 99999
Q ss_pred eEEEeccC
Q 023475 102 ANCNLASL 109 (281)
Q Consensus 102 i~V~~a~~ 109 (281)
|.|++...
T Consensus 350 LQVsFKtn 357 (360)
T KOG0145|consen 350 LQVSFKTN 357 (360)
T ss_pred EEEEEecC
Confidence 99998754
No 54
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=4e-12 Score=111.68 Aligned_cols=85 Identities=29% Similarity=0.457 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC--CCcCC--ceeEEE
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDG--RRANCN 105 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~--~~i~G--~~i~V~ 105 (281)
+.++||||.|.+.-.|||++++|..||+|++|.|++..+ +.+|||+||+|.+..+|+.||..|+ .++-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 678999999999999999999999999999999999886 9999999999999999999999987 34544 678999
Q ss_pred eccCCCCCCc
Q 023475 106 LASLGRPRPQ 115 (281)
Q Consensus 106 ~a~~~~~~~~ 115 (281)
+++..++|.-
T Consensus 97 ~ADTdkER~l 106 (371)
T KOG0146|consen 97 FADTDKERTL 106 (371)
T ss_pred eccchHHHHH
Confidence 9987766543
No 55
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.27 E-value=7.7e-12 Score=104.34 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=75.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEE-EEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
..+|||+||.++++|..|.++|+.||.|... +|++|..|+++++|+||.|++.|.+.+||+.++ ..++.++|.|.++.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 4799999999999999999999999998764 899999999999999999999999999999987 56999999999997
Q ss_pred CCCCCC
Q 023475 109 LGRPRP 114 (281)
Q Consensus 109 ~~~~~~ 114 (281)
++..+.
T Consensus 176 k~~~kg 181 (203)
T KOG0131|consen 176 KKDTKG 181 (203)
T ss_pred ecCCCc
Confidence 655443
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.4e-11 Score=117.14 Aligned_cols=80 Identities=25% Similarity=0.452 Sum_probs=73.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (281)
..+|.|+||||.+.+++|+.+|+.||.|.+|.|.+.+. ++-+|||||.|.+..+|.+||+.+| ++|+||.|.|.||..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 67899999999999999999999999999999998776 5556999999999999999999987 679999999999976
Q ss_pred CC
Q 023475 110 GR 111 (281)
Q Consensus 110 ~~ 111 (281)
+.
T Consensus 196 Kd 197 (678)
T KOG0127|consen 196 KD 197 (678)
T ss_pred cc
Confidence 54
No 57
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=9.4e-12 Score=113.03 Aligned_cols=84 Identities=29% Similarity=0.431 Sum_probs=77.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
.+.......|||..|.+-+++++|.-+|+.||.|..|.||+|+.||.+..||||+|++.+++++|.-+|. ..|+.++|+
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 3444566899999999999999999999999999999999999999999999999999999999999975 569999999
Q ss_pred EEecc
Q 023475 104 CNLAS 108 (281)
Q Consensus 104 V~~a~ 108 (281)
|.++.
T Consensus 313 VDFSQ 317 (479)
T KOG0415|consen 313 VDFSQ 317 (479)
T ss_pred eehhh
Confidence 98875
No 58
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.4e-11 Score=114.31 Aligned_cols=79 Identities=33% Similarity=0.561 Sum_probs=71.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCC-CcCCceeEEEeccCCC
Q 023475 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRANCNLASLGR 111 (281)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~G~~i~V~~a~~~~ 111 (281)
.|||.||+.++|.++|.++|+.||+|++|+|.+|.+ | +||| ||+|+++++|++||+.+|. .+.+++|.|.+...+.
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 399999999999999999999999999999999986 5 9999 9999999999999999874 5999999999887665
Q ss_pred CCC
Q 023475 112 PRP 114 (281)
Q Consensus 112 ~~~ 114 (281)
.|.
T Consensus 155 er~ 157 (369)
T KOG0123|consen 155 ERE 157 (369)
T ss_pred hhc
Confidence 543
No 59
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=3.1e-11 Score=109.43 Aligned_cols=80 Identities=33% Similarity=0.491 Sum_probs=72.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhC-CC-CCcCCce
Q 023475 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PT-PFIDGRR 101 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~-~~-~~i~G~~ 101 (281)
.+-+|...++|||++|...++|.+|+++|.+||+|+.++++.. +++|||+|.+.++|++|.++ .+ .+|+|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 4667888999999999999999999999999999999999776 45999999999999999998 45 4499999
Q ss_pred eEEEeccC
Q 023475 102 ANCNLASL 109 (281)
Q Consensus 102 i~V~~a~~ 109 (281)
|+|.|...
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999976
No 60
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.21 E-value=3.5e-11 Score=82.70 Aligned_cols=55 Identities=27% Similarity=0.549 Sum_probs=48.7
Q ss_pred HHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 48 MRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 48 L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
|+++|++||+|+++++..++ +++|||+|.+.++|++|++.++ ..++|++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997764 6899999999999999999877 5599999999985
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.21 E-value=4.3e-11 Score=111.30 Aligned_cols=78 Identities=18% Similarity=0.405 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHh-cCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
..+.+||.|||.++.+.+|+++|. +-|+|+-|+|+.|.. +++||||.|+|+++|.++||++.|+ +++.||.|+|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 456799999999999999999995 689999999999985 9999999999999999999999998 5699999999976
Q ss_pred c
Q 023475 108 S 108 (281)
Q Consensus 108 ~ 108 (281)
.
T Consensus 122 ~ 122 (608)
T KOG4212|consen 122 H 122 (608)
T ss_pred C
Confidence 4
No 62
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.20 E-value=1.7e-10 Score=109.43 Aligned_cols=80 Identities=25% Similarity=0.381 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (281)
...+|||+|||.++++++|+++|++||.|++..|......++..+||||+|.+.++++.||++....|++++|.|+..+.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 44559999999999999999999999999998877654335555999999999999999999986679999999998654
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=1.3e-11 Score=112.55 Aligned_cols=78 Identities=32% Similarity=0.595 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
-.|+||||.|.+++.||.||..|..||.|++|.+-.|..|+++||||||+|+-+|.|.-|++.+| ..+.||.|+|..-
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 35899999999999999999999999999999999999999999999999999999999999998 5599999999854
No 64
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.17 E-value=2.4e-11 Score=115.76 Aligned_cols=80 Identities=33% Similarity=0.579 Sum_probs=73.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~ 110 (281)
.+|||+||.++++|++|+.+|+.||.|+.|.+.+|..||.+|||+||+|.+.++|++|++.+| .+|-|+.|+|..-+.+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 349999999999999999999999999999999999899999999999999999999999988 5599999999887644
Q ss_pred C
Q 023475 111 R 111 (281)
Q Consensus 111 ~ 111 (281)
-
T Consensus 359 ~ 359 (549)
T KOG0147|consen 359 V 359 (549)
T ss_pred c
Confidence 3
No 65
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.15 E-value=1.4e-10 Score=110.89 Aligned_cols=80 Identities=24% Similarity=0.442 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
.-.++|||.+|...+...+|+.+|++||+|+..+|+++..+--.|+|+||++.+.++|.+||+.|+ .+|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 356799999999999999999999999999999999998777889999999999999999999988 5699999999988
Q ss_pred c
Q 023475 108 S 108 (281)
Q Consensus 108 ~ 108 (281)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 6
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.11 E-value=3.3e-10 Score=100.72 Aligned_cols=75 Identities=27% Similarity=0.487 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|+|+||.+.++.+||++.|++||.|.+|+|++| |+||+|+-.++|..||+.|+ .++.|++++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 456789999999999999999999999999999999987 99999999999999999976 779999999999
Q ss_pred ccCC
Q 023475 107 ASLG 110 (281)
Q Consensus 107 a~~~ 110 (281)
++.+
T Consensus 147 stsr 150 (346)
T KOG0109|consen 147 STSR 150 (346)
T ss_pred eccc
Confidence 9754
No 67
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.10 E-value=3.3e-10 Score=110.75 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=61.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcC------------CCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhC
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQF------------GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~------------G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (281)
+..+...++|||+||+.++|+++|+++|+.+ +.|+.+.+ .+.+|||||+|.+.++|++||+.
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l 242 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMAL 242 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcC
Confidence 3456678899999999999999999999975 22333333 45688999999999999999964
Q ss_pred CCCCcCCceeEEEecc
Q 023475 93 PTPFIDGRRANCNLAS 108 (281)
Q Consensus 93 ~~~~i~G~~i~V~~a~ 108 (281)
....|.|+.|+|....
T Consensus 243 ~g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPH 258 (509)
T ss_pred CCeEeeCceeEecCcc
Confidence 4466999999997554
No 68
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.09 E-value=1.9e-10 Score=113.25 Aligned_cols=78 Identities=21% Similarity=0.404 Sum_probs=70.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (281)
++|||||.|+.+++|.||..+|+.||+|.+|.++-. |+||||+....++|.+||.+|. ..|..+.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999999765 6799999999999999999976 569999999999986
Q ss_pred CCCCC
Q 023475 110 GRPRP 114 (281)
Q Consensus 110 ~~~~~ 114 (281)
+-.+.
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 65444
No 69
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.07 E-value=4.8e-10 Score=95.37 Aligned_cols=87 Identities=24% Similarity=0.382 Sum_probs=76.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcC-CCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCce
Q 023475 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRR 101 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~ 101 (281)
..........++|..|+.-+.+.+|..+|.+| |.|+++++-+++.||.+||||||+|+++|.|+-|-+.||.. +.++.
T Consensus 42 ~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 42 EKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred cCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 34456667789999999999999999999998 77888888899999999999999999999999999998754 88899
Q ss_pred eEEEeccCC
Q 023475 102 ANCNLASLG 110 (281)
Q Consensus 102 i~V~~a~~~ 110 (281)
|.|.+-.+.
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 999987654
No 70
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.06 E-value=5.4e-10 Score=96.34 Aligned_cols=82 Identities=26% Similarity=0.430 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHH----HHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCcee
Q 023475 28 DTTYTKVFVGGLAWETQSETMRR----YFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRA 102 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~----~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i 102 (281)
...+.+|||.||.+.+..++|++ +|++||+|++|...+ |.+.||-|||.|.+.+.|..|+..|+.. +-|+.+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34455999999999999999988 999999999998765 4788999999999999999999998855 999999
Q ss_pred EEEeccCCCC
Q 023475 103 NCNLASLGRP 112 (281)
Q Consensus 103 ~V~~a~~~~~ 112 (281)
+|.+|+.+..
T Consensus 83 riqyA~s~sd 92 (221)
T KOG4206|consen 83 RIQYAKSDSD 92 (221)
T ss_pred heecccCccc
Confidence 9999986644
No 71
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.96 E-value=7.1e-10 Score=96.98 Aligned_cols=90 Identities=31% Similarity=0.517 Sum_probs=79.6
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCc
Q 023475 19 FQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (281)
Q Consensus 19 ~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i 97 (281)
..-.+..+.+++..+||+|.|-.+++++.|-+.|.+|-.-...+|++|+.|+++|||+||.|.+.+++.+|+.+++ +.+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 3334455667788999999999999999999999999988899999999999999999999999999999999988 559
Q ss_pred CCceeEEEecc
Q 023475 98 DGRRANCNLAS 108 (281)
Q Consensus 98 ~G~~i~V~~a~ 108 (281)
+.+.|+++.+.
T Consensus 258 gsrpiklRkS~ 268 (290)
T KOG0226|consen 258 GSRPIKLRKSE 268 (290)
T ss_pred ccchhHhhhhh
Confidence 99998877654
No 72
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1.6e-09 Score=99.09 Aligned_cols=81 Identities=19% Similarity=0.390 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCC-CcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~G~~i~V~~a 107 (281)
....+|||..+..+++|+||+.+|+.||+|+.|++-++..++.+|||+||+|.+..+...||..+|. .|.|.-|+|-.+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 4567999999999999999999999999999999999999999999999999999999999999995 499999999876
Q ss_pred cC
Q 023475 108 SL 109 (281)
Q Consensus 108 ~~ 109 (281)
..
T Consensus 288 vT 289 (544)
T KOG0124|consen 288 VT 289 (544)
T ss_pred cC
Confidence 53
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.95 E-value=1.7e-09 Score=100.84 Aligned_cols=78 Identities=28% Similarity=0.473 Sum_probs=69.7
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
.-...+.|+|||+|||+++|+..|++-|..||+|+.++|+.. +++|| .|.|.++++|++||..++ ..|+|+.|+
T Consensus 530 ~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~ 604 (608)
T KOG4212|consen 530 VGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIK 604 (608)
T ss_pred ccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccc--eEEecCHHHHHHHHHHhccCcccCceee
Confidence 344567899999999999999999999999999999998654 88888 899999999999999988 559999999
Q ss_pred EEec
Q 023475 104 CNLA 107 (281)
Q Consensus 104 V~~a 107 (281)
|.+.
T Consensus 605 V~y~ 608 (608)
T KOG4212|consen 605 VTYF 608 (608)
T ss_pred eeeC
Confidence 9863
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=8e-10 Score=108.19 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
+.+.++|+|.|||+..+..+++++|+.||.|++|+|.+....+.+||||||+|-+.++|.+|+..|. ..|.||+|.++|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 3347899999999999999999999999999999998876667789999999999999999999987 449999999999
Q ss_pred ccCCC
Q 023475 107 ASLGR 111 (281)
Q Consensus 107 a~~~~ 111 (281)
|+...
T Consensus 690 A~~d~ 694 (725)
T KOG0110|consen 690 AKSDN 694 (725)
T ss_pred hccch
Confidence 97554
No 75
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.92 E-value=2.1e-08 Score=91.33 Aligned_cols=75 Identities=19% Similarity=0.395 Sum_probs=64.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCC--CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
+...+|||||-|++|++||.+.+..-| .|.++|+..++.+|.+||||+|...+..+.++.++.|. ++|.|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 345789999999999999999887765 67788999999999999999999999999999999986 6688865444
No 76
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.91 E-value=1.7e-08 Score=87.03 Aligned_cols=114 Identities=21% Similarity=0.183 Sum_probs=79.7
Q ss_pred CCCcCCCCCCCCCCCC---CCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEe-eCCCCCCcccEE
Q 023475 1 MAYQSIPGPGSGSSSS---SGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVI-TDKNTGRSKGYG 76 (281)
Q Consensus 1 ~~~~~~~~~~~~ssss---s~~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~-~d~~tg~skG~a 76 (281)
|+|..-+..+...-.+ -........++....++|||.+||.++...||..+|..|-.-+.+.|. .++.....+-+|
T Consensus 1 M~~p~Pp~~s~~~~es~hsvs~~~~~~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pva 80 (284)
T KOG1457|consen 1 MAYPQPPFYSYQLHESPHSVSPQLPLLADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVA 80 (284)
T ss_pred CCCCCCCccccccccCCCCCCcccccccccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceE
Confidence 6666655544432211 112222334445568999999999999999999999998766655443 334333456899
Q ss_pred EEEEcCHHHHHHHHhCCCCC-c---CCceeEEEeccCCCCCC
Q 023475 77 FVTFREPEAARRACADPTPF-I---DGRRANCNLASLGRPRP 114 (281)
Q Consensus 77 FV~F~~~~~A~~Ai~~~~~~-i---~G~~i~V~~a~~~~~~~ 114 (281)
||+|.+..+|.+|+..||.+ + .+..|+|++|+...+++
T Consensus 81 FatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~k 122 (284)
T KOG1457|consen 81 FATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRK 122 (284)
T ss_pred EEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccc
Confidence 99999999999999998854 3 56889999997554443
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=3.6e-09 Score=103.65 Aligned_cols=79 Identities=30% Similarity=0.541 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCC---CcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTG---RSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg---~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
..++|||.||+++++.++|..+|++.|.|+++.|.+.++.. .+.|||||+|.+.++|++|++.|+ ..|+|+.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34459999999999999999999999999999988766432 245999999999999999999998 66999999999
Q ss_pred ecc
Q 023475 106 LAS 108 (281)
Q Consensus 106 ~a~ 108 (281)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 987
No 78
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=3.9e-09 Score=99.41 Aligned_cols=73 Identities=25% Similarity=0.411 Sum_probs=68.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~ 110 (281)
..|||| .++||+.|.++|+.+|.|++++|.+|. | +-|||||.|.++++|++||+++| ..|.|++|+|.|+.+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 479999 999999999999999999999999998 6 99999999999999999999998 4599999999998644
No 79
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.85 E-value=8.4e-09 Score=91.12 Aligned_cols=85 Identities=24% Similarity=0.308 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (281)
..+.+.+.+||+|+...++.++|..+|+.||.|..|.|..|+.++.+|||+||+|.+.+.+++++......|.++.|+|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 45667899999999999999999999999999999999999999999999999999999999999944477999999999
Q ss_pred eccCC
Q 023475 106 LASLG 110 (281)
Q Consensus 106 ~a~~~ 110 (281)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87544
No 80
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.83 E-value=1.6e-08 Score=89.58 Aligned_cols=85 Identities=29% Similarity=0.430 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~ 105 (281)
.+...++|+|.||+..++++||+++|..|++++.+-|-.|+. |++.|.|-|.|+..++|.+||+.++.+ ++|+.|++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 455668999999999999999999999999999999988875 999999999999999999999997755 999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+......
T Consensus 158 ~i~~~~~ 164 (243)
T KOG0533|consen 158 IISSPSQ 164 (243)
T ss_pred EecCccc
Confidence 8865443
No 81
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.75 E-value=4.4e-08 Score=92.74 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEe
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (281)
+..+...|-+.+|||++|++||.+||+.++ |+++++.++ +|+..|-|||+|.++|++++||++....+..|-|+|..
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 445667888899999999999999999995 777665554 69999999999999999999999987779999999988
Q ss_pred ccCC
Q 023475 107 ASLG 110 (281)
Q Consensus 107 a~~~ 110 (281)
+..+
T Consensus 83 ~~~~ 86 (510)
T KOG4211|consen 83 AGGA 86 (510)
T ss_pred cCCc
Confidence 7543
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=8.1e-09 Score=88.72 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~~a~ 108 (281)
..++|||+||...++|+.|.++|.+-|.|.+|+|..+++ ++.| ||||.|+++.++.-|++.+|.. +.++.|.|++-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 357999999999999999999999999999999988876 7777 9999999999999999998854 889888887754
No 83
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.65 E-value=1.1e-07 Score=86.62 Aligned_cols=82 Identities=18% Similarity=0.308 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEe--------EEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCc
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEIL--------EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--------~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i 97 (281)
+...+++|||.|||.++|.+++.++|++||.|. .|+|-++.+ |+.||=|.++|...++++-||..|+ ..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 355678899999999999999999999999875 478888876 9999999999999999999999988 569
Q ss_pred CCceeEEEeccC
Q 023475 98 DGRRANCNLASL 109 (281)
Q Consensus 98 ~G~~i~V~~a~~ 109 (281)
.|+.|+|+.|+-
T Consensus 209 rg~~~rVerAkf 220 (382)
T KOG1548|consen 209 RGKKLRVERAKF 220 (382)
T ss_pred cCcEEEEehhhh
Confidence 999999999874
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=2.1e-08 Score=96.15 Aligned_cols=74 Identities=28% Similarity=0.341 Sum_probs=65.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
++.+....+|+|-||+..|++++|+++|+.||+|++|+. |-..++.+||+|.|..+|++|+++++ .+|.|++|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 344778899999999999999999999999999999754 34457899999999999999999988 669999988
No 85
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=4.7e-08 Score=84.89 Aligned_cols=70 Identities=29% Similarity=0.572 Sum_probs=62.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (281)
.+|||++|++.+.+.+|.++|..||.|.+|.+. .||+||+|++..+|..||..++ ++|++.++.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 579999999999999999999999999999764 3599999999999999999987 668888888888863
No 86
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.55 E-value=1.3e-07 Score=86.56 Aligned_cols=89 Identities=26% Similarity=0.274 Sum_probs=78.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEe--------EEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 023475 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEIL--------EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 23 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--------~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
........+.+|||.+|+..+++++|.++|.+++.|. .|+|-+|+.|++.|+-|.|+|+|...|+.||+.++
T Consensus 58 ~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a 137 (351)
T KOG1995|consen 58 SSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA 137 (351)
T ss_pred CccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc
Confidence 3444567788999999999999999999999999886 46788899999999999999999999999999976
Q ss_pred -CCcCCceeEEEeccCCC
Q 023475 95 -PFIDGRRANCNLASLGR 111 (281)
Q Consensus 95 -~~i~G~~i~V~~a~~~~ 111 (281)
+.+.+..|+|.+|..+.
T Consensus 138 gkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 138 GKDFCGNTIKVSLAERRT 155 (351)
T ss_pred cccccCCCchhhhhhhcc
Confidence 66999999999986544
No 87
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.42 E-value=7.8e-08 Score=92.11 Aligned_cols=87 Identities=23% Similarity=0.350 Sum_probs=77.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEe
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (281)
++.+.++||+--|...+++.+|.+||+.+|.|.+|.+|.|+.++++||.|+|+|.|.+.+..||...+..+.|..|.|..
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 34467889999999999999999999999999999999999999999999999999999999998877889999999998
Q ss_pred ccCCCCC
Q 023475 107 ASLGRPR 113 (281)
Q Consensus 107 a~~~~~~ 113 (281)
....+.+
T Consensus 255 sEaeknr 261 (549)
T KOG0147|consen 255 SEAEKNR 261 (549)
T ss_pred cHHHHHH
Confidence 7544433
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.36 E-value=2.6e-06 Score=65.21 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=64.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhc--CCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CC---c-CCceeEE
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQ--FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF---I-DGRRANC 104 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~--~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~---i-~G~~i~V 104 (281)
++|-|+|||...|.++|.+++.. .|+..-+-+..|..++.+.|||||.|.+++.|.+..+..+ .. + ..|.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999865 3677778888999899999999999999999999988754 22 2 3566688
Q ss_pred Eecc
Q 023475 105 NLAS 108 (281)
Q Consensus 105 ~~a~ 108 (281)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8885
No 89
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.36 E-value=1e-06 Score=86.69 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=73.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCC---CCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCc
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN---TGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~---tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~ 100 (281)
.+.|...++|||+||+..++|+.|...|..||.|..|+|+..+. ..+-+-|+||.|-+..+|++|++.|+ ..|...
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 34477889999999999999999999999999999999986542 34556799999999999999999987 558999
Q ss_pred eeEEEecc
Q 023475 101 RANCNLAS 108 (281)
Q Consensus 101 ~i~V~~a~ 108 (281)
.+++.|++
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 99999984
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.28 E-value=9.8e-07 Score=85.21 Aligned_cols=90 Identities=23% Similarity=0.436 Sum_probs=80.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCcee
Q 023475 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRA 102 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i 102 (281)
.+......+++||++|+..++++.++++++.||.+....++.|..++.+|||||.+|.+......||+.+|.+ +.+++|
T Consensus 282 ~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~l 361 (500)
T KOG0120|consen 282 STDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKL 361 (500)
T ss_pred ccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCcee
Confidence 3445567789999999999999999999999999999999999999999999999999999999999999865 888999
Q ss_pred EEEeccCCCCC
Q 023475 103 NCNLASLGRPR 113 (281)
Q Consensus 103 ~V~~a~~~~~~ 113 (281)
.|..|......
T Consensus 362 vvq~A~~g~~~ 372 (500)
T KOG0120|consen 362 VVQRAIVGASN 372 (500)
T ss_pred Eeehhhccchh
Confidence 99998765543
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.27 E-value=2.3e-06 Score=81.36 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeE-EEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (281)
.....|-+++||+.|||+||.+||+-.-.|.+ |.++.|+. +++.|-|||.|++.|.|++||..+...|.-|-|+|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 34568889999999999999999998765555 44555654 78999999999999999999999888899999999877
Q ss_pred c
Q 023475 108 S 108 (281)
Q Consensus 108 ~ 108 (281)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 5
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.08 E-value=1.3e-05 Score=59.24 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=47.0
Q ss_pred cEEEEcCCCCCCcHHH----HHHHHhcCC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCceeEEE
Q 023475 32 TKVFVGGLAWETQSET----MRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCN 105 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~----L~~~F~~~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~ 105 (281)
..|+|.|||.+.+... |+.++..+| .|.+| +.+-|+|.|.+.|.|.+|.+.++.+ +.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988765 567777786 55554 1358999999999999999998755 999999999
Q ss_pred eccC
Q 023475 106 LASL 109 (281)
Q Consensus 106 ~a~~ 109 (281)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8843
No 93
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.02 E-value=7.6e-06 Score=63.75 Aligned_cols=70 Identities=27% Similarity=0.407 Sum_probs=44.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC------CCcCCceeEEE
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT------PFIDGRRANCN 105 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~------~~i~G~~i~V~ 105 (281)
+.|.|.++...++.++|+++|+.|+.|.-|++.+... .|+|.|.+.++|++|++.+. ..|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5688999999999999999999999999998877543 89999999999999997632 23777777666
Q ss_pred ec
Q 023475 106 LA 107 (281)
Q Consensus 106 ~a 107 (281)
+-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=6.4e-06 Score=71.67 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=64.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
....+.+.|+|.+|..++.+.+|.++|+.+|.++...+ .++++||+|++.+++++||+.++ ..|.++.|.|
T Consensus 94 ~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 94 PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 33567899999999999999999999999999855443 35599999999999999999987 6699999999
Q ss_pred EeccCC
Q 023475 105 NLASLG 110 (281)
Q Consensus 105 ~~a~~~ 110 (281)
......
T Consensus 166 ~~~~~d 171 (216)
T KOG0106|consen 166 EKNSRD 171 (216)
T ss_pred cccCcc
Confidence 655433
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.99 E-value=8e-06 Score=74.50 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=70.6
Q ss_pred CcEEE-EcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 023475 31 YTKVF-VGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (281)
Q Consensus 31 ~~~lf-VgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (281)
..++| |++|++++++++|+.+|..++.|..+++..++.++..+||++|+|.+...+..++......|.++.+.|.....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 34455 99999999999999999999999999999999999999999999999999999998834669999999888743
No 96
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.99 E-value=8.5e-05 Score=69.43 Aligned_cols=76 Identities=13% Similarity=0.256 Sum_probs=67.5
Q ss_pred CcEEEEcCCCC-CCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 31 YTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 31 ~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
++.|.|.||.. .+|.+.|..+|.-||+|.+|+|+.++ |--|.|.+.|...|+-|++.|+ +.|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 68899999975 58999999999999999999999875 3589999999999999999987 56999999999987
Q ss_pred CCC
Q 023475 109 LGR 111 (281)
Q Consensus 109 ~~~ 111 (281)
-..
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 443
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.93 E-value=7.3e-06 Score=70.96 Aligned_cols=64 Identities=14% Similarity=0.258 Sum_probs=51.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
......+|||.||..+++||+|+.+|+.|-....++|- .+ ..-..|||+|++.+.|..|+..+.
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~---~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-AR---GGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cC---CCcceEeecHHHHHHHHHHHHHhh
Confidence 34467799999999999999999999999876666553 22 223589999999999999998865
No 98
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.79 E-value=6.7e-05 Score=51.05 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHH
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai 90 (281)
+.|-|.+.+.+..++ +.++|..||+|+++.+... +-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 467788888777644 5558999999999888633 349999999999999986
No 99
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.79 E-value=6.8e-05 Score=74.08 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=66.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
.....-.+.|-|.|+|++++-+||.+||..|-.+-+-.+++-.+.|+..|-|.|.|++.++|.+|...++ +.|..++|+
T Consensus 861 ~~~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~ 940 (944)
T KOG4307|consen 861 LIKSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVS 940 (944)
T ss_pred hcCCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEE
Confidence 3334445688999999999999999999999766544344434459999999999999999999999987 559999988
Q ss_pred EEe
Q 023475 104 CNL 106 (281)
Q Consensus 104 V~~ 106 (281)
|.+
T Consensus 941 l~i 943 (944)
T KOG4307|consen 941 LRI 943 (944)
T ss_pred EEe
Confidence 875
No 100
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.78 E-value=2.8e-05 Score=72.53 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=62.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCC---CCCcCCceeEEE
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP---TPFIDGRRANCN 105 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~---~~~i~G~~i~V~ 105 (281)
..++.|.++||+++++|+||.+++..||.|+.+.+++.++ -|||+|.|+++|..-+.-- ...+.++.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 3678999999999999999999999999999999988654 8999999999988755442 245888999888
Q ss_pred ecc
Q 023475 106 LAS 108 (281)
Q Consensus 106 ~a~ 108 (281)
++.
T Consensus 100 ~sn 102 (492)
T KOG1190|consen 100 YSN 102 (492)
T ss_pred hhh
Confidence 765
No 101
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.76 E-value=3.9e-05 Score=72.00 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=60.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeC---CCC--CC--------cccEEEEEEcCHHHHHHHH
Q 023475 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITD---KNT--GR--------SKGYGFVTFREPEAARRAC 90 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d---~~t--g~--------skG~aFV~F~~~~~A~~Ai 90 (281)
..+++...++|.+-|||.+-.-+.|.++|+.+|.|+.|+|.+. ... +. .+-+|||+|++.+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3445568999999999999999999999999999999998765 211 11 2568999999999999999
Q ss_pred hCCCCC
Q 023475 91 ADPTPF 96 (281)
Q Consensus 91 ~~~~~~ 96 (281)
+.++.+
T Consensus 304 e~~~~e 309 (484)
T KOG1855|consen 304 ELLNPE 309 (484)
T ss_pred Hhhchh
Confidence 998643
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=9.5e-05 Score=70.92 Aligned_cols=67 Identities=27% Similarity=0.484 Sum_probs=51.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCC---CCCccc---EEEEEEcCHHHHHHHHhCCC
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN---TGRSKG---YGFVTFREPEAARRACADPT 94 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~---tg~skG---~aFV~F~~~~~A~~Ai~~~~ 94 (281)
...-.++||||+||++++|++|...|..||.+. |++..... ---.|| |+|+.|+++.++.+.|.++.
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 344678999999999999999999999999864 44442111 123567 99999999999888776643
No 103
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.62 E-value=0.00019 Score=62.33 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=62.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCC-CcC-CceeEEE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FID-GRRANCN 105 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~-G~~i~V~ 105 (281)
...+..||+.|||.+++.+.|..+|+.|...++|+++..+ ++.|||+|.+...|..|...+.. .|. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3467789999999999999999999999999999988754 57999999999998888888652 233 6667776
Q ss_pred ec
Q 023475 106 LA 107 (281)
Q Consensus 106 ~a 107 (281)
.+
T Consensus 218 ~a 219 (221)
T KOG4206|consen 218 FA 219 (221)
T ss_pred cc
Confidence 65
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00019 Score=68.84 Aligned_cols=80 Identities=28% Similarity=0.284 Sum_probs=66.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHh-cCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCC----CCCcCCcee
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP----TPFIDGRRA 102 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~----~~~i~G~~i 102 (281)
-+..+|||||+|+.-++.++|-.+|+ -||.|+-+-|-.|.+-+-.||-|=|+|++..+-.+||++- ++.--.|+|
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRV 446 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRV 446 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceee
Confidence 34568999999999999999999998 6999999999999777889999999999999999999872 222223466
Q ss_pred EEEec
Q 023475 103 NCNLA 107 (281)
Q Consensus 103 ~V~~a 107 (281)
+|+.-
T Consensus 447 EIkPY 451 (520)
T KOG0129|consen 447 EIKPY 451 (520)
T ss_pred eecce
Confidence 66544
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.52 E-value=0.00018 Score=65.78 Aligned_cols=81 Identities=23% Similarity=0.407 Sum_probs=62.0
Q ss_pred CCcEEEEcCCCCCCcHHH----H--HHHHhcCCCEeEEEEeeCCCCCC-cccEE--EEEEcCHHHHHHHHhCCC-CCcCC
Q 023475 30 TYTKVFVGGLAWETQSET----M--RRYFEQFGEILEAVVITDKNTGR-SKGYG--FVTFREPEAARRACADPT-PFIDG 99 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~----L--~~~F~~~G~I~~v~v~~d~~tg~-skG~a--FV~F~~~~~A~~Ai~~~~-~~i~G 99 (281)
...-|||-+|+..+.+|+ | .++|.+||.|..|.|-+...+.. ..+.+ +|+|.+.|+|.+||.+.+ ..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345789999998887776 3 48999999999988765431111 12223 999999999999999976 56999
Q ss_pred ceeEEEeccCC
Q 023475 100 RRANCNLASLG 110 (281)
Q Consensus 100 ~~i~V~~a~~~ 110 (281)
|.|++.+...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999887644
No 106
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.49 E-value=0.00056 Score=52.74 Aligned_cols=77 Identities=25% Similarity=0.308 Sum_probs=50.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEE-EeeCC------CCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCcee
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAV-VITDK------NTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA 102 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~-v~~d~------~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i 102 (281)
..+-|.|=+.|.+ ....|.++|++||+|++.. +.++. ..-.....-.|+|+++.+|.+||.++...|.|.-|
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3456777789888 4566788899999998774 11110 00123458899999999999999999888887544
Q ss_pred -EEEec
Q 023475 103 -NCNLA 107 (281)
Q Consensus 103 -~V~~a 107 (281)
-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 56665
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.48 E-value=0.0012 Score=61.32 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=69.3
Q ss_pred CCCCCCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCce
Q 023475 24 SPFGDTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~ 101 (281)
.+......+.+.|-+|... ++-+.|..+|+.||.|++|++++.+ .|-|.|+..|..+.++||..|+ ..+-|.+
T Consensus 280 ~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 280 SPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 3455667899999999864 6778899999999999999999876 4789999999999999999987 4589999
Q ss_pred eEEEecc
Q 023475 102 ANCNLAS 108 (281)
Q Consensus 102 i~V~~a~ 108 (281)
|.|..++
T Consensus 355 l~v~~Sk 361 (494)
T KOG1456|consen 355 LNVCVSK 361 (494)
T ss_pred EEEeecc
Confidence 9998875
No 108
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.24 E-value=0.0017 Score=45.46 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=46.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcC---CCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQF---GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~---G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~ 93 (281)
....+|+|.+|. +++.++|+.+|..| ....+|+++-|. -|-|.|.+.+.|.+||.+|
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 345789999985 57778899999988 235689999886 5889999999999999864
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.23 E-value=0.00038 Score=64.70 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=65.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCC-EeE--EEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCceeEEEe
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGE-ILE--AVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNL 106 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~--v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~V~~ 106 (281)
...|-+++||.+.+.|+|.+||..|.. |+. |.++.+.+ |+..|-|||+|.++|+|..|..+.++. .+.|-|+|.-
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 456889999999999999999999864 333 67777765 899999999999999999999987644 6688899887
Q ss_pred ccC
Q 023475 107 ASL 109 (281)
Q Consensus 107 a~~ 109 (281)
+..
T Consensus 359 ~S~ 361 (508)
T KOG1365|consen 359 CSV 361 (508)
T ss_pred ccH
Confidence 753
No 110
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.20 E-value=0.00021 Score=72.12 Aligned_cols=78 Identities=15% Similarity=0.243 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (281)
..+|||.|+++..|+++|+.+++++|.+++++++..+. |+.||.+||.|.++.++.+++.... ..+..+.++|.++.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 56899999999999999999999999999999988886 9999999999999999999999976 347777778887665
No 111
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0017 Score=63.06 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=59.8
Q ss_pred CCCcEEEEcCCCCCCc------HHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CC-cCCc
Q 023475 29 TTYTKVFVGGLAWETQ------SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF-IDGR 100 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~t------e~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~-i~G~ 100 (281)
.-...|+|-|+|.--. ..-|.++|+++|+|..+.+..+.. +..+||.|++|.+..+|++|++.++ +. ...+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3456788888875322 223678999999999999988877 4499999999999999999999987 33 4556
Q ss_pred eeEEEec
Q 023475 101 RANCNLA 107 (281)
Q Consensus 101 ~i~V~~a 107 (281)
++.|.+-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 6666543
No 112
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.07 E-value=0.00057 Score=63.59 Aligned_cols=78 Identities=22% Similarity=0.272 Sum_probs=59.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhc---C-CCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEE
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQ---F-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~---~-G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (281)
+.-.|-+++||+++++.++.+||.. . +..+.|-+++.. .|+..|-|||.|..+++|+.||.++...|.-|-|++.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3456677899999999999999963 2 244555555544 4899999999999999999999987666766666655
Q ss_pred ecc
Q 023475 106 LAS 108 (281)
Q Consensus 106 ~a~ 108 (281)
.++
T Consensus 239 RST 241 (508)
T KOG1365|consen 239 RST 241 (508)
T ss_pred HHh
Confidence 443
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.01 E-value=0.0017 Score=53.16 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=45.7
Q ss_pred HHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEeccCCC
Q 023475 47 TMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASLGR 111 (281)
Q Consensus 47 ~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~~~ 111 (281)
+|.+.|..||++.=|+++.+ .-+|+|.+-++|.+|+......|+|+.|+|++.++..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccH
Confidence 57788889999988888776 4599999999999999999989999999999987554
No 114
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.00 E-value=0.0029 Score=58.20 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=62.0
Q ss_pred CCCCCCCcEEEEcCCC----CCCc-------HHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 023475 25 PFGDTTYTKVFVGGLA----WETQ-------SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp----~~~t-------e~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~ 93 (281)
+......++|.|.||= .+.+ +++|++-.++||.|.+|.|. | ..+.|.+-|.|.+.++|..||+.|
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHh
Confidence 3445567889999872 2333 34566778899999998764 3 346899999999999999999998
Q ss_pred C-CCcCCceeEEEecc
Q 023475 94 T-PFIDGRRANCNLAS 108 (281)
Q Consensus 94 ~-~~i~G~~i~V~~a~ 108 (281)
+ ..++||.|..++..
T Consensus 335 ~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 335 DGRWFDGRQLTASIWD 350 (382)
T ss_pred cCeeecceEEEEEEeC
Confidence 7 56999999888765
No 115
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.96 E-value=0.00048 Score=60.89 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=58.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCC--------CCccc----EEEEEEcCHHHHHHHHhCCC-CC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNT--------GRSKG----YGFVTFREPEAARRACADPT-PF 96 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~t--------g~skG----~aFV~F~~~~~A~~Ai~~~~-~~ 96 (281)
..-.||+++||+.++-..|+++|+.||+|-+|.|.....+ +.++. -++|+|.+...|+++.+.|| ..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5578999999999999999999999999999988765443 22222 36899999999999999877 44
Q ss_pred cCCce
Q 023475 97 IDGRR 101 (281)
Q Consensus 97 i~G~~ 101 (281)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 88765
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.81 E-value=0.00026 Score=71.87 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=68.0
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCc
Q 023475 19 FQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (281)
Q Consensus 19 ~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i 97 (281)
+++...-++...+++||++||...+++.+|+..|..+|.|.+|+|-+.+. +.-.-|+||.|.+.+.+-+|+..+. ..|
T Consensus 360 ~t~v~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I 438 (975)
T KOG0112|consen 360 LTHVLKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLI 438 (975)
T ss_pred ccccccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCcc
Confidence 34445556677889999999999999999999999999999998866543 3334589999999999999988865 334
Q ss_pred CCceeEEEec
Q 023475 98 DGRRANCNLA 107 (281)
Q Consensus 98 ~G~~i~V~~a 107 (281)
..-.+++.+.
T Consensus 439 ~~g~~r~glG 448 (975)
T KOG0112|consen 439 GNGTHRIGLG 448 (975)
T ss_pred ccCccccccc
Confidence 4444555544
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.80 E-value=0.00015 Score=73.22 Aligned_cols=70 Identities=29% Similarity=0.385 Sum_probs=61.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDG 99 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G 99 (281)
+.+++||.||+..+.+++|...|..++.|..+.+.-.+++++.||.|+|+|.+.+++.+||+.....+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 4568999999999999999999999999988877766677999999999999999999999987755444
No 118
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.79 E-value=0.00047 Score=60.96 Aligned_cols=62 Identities=27% Similarity=0.399 Sum_probs=48.9
Q ss_pred HHHHHHh-cCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 023475 47 TMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (281)
Q Consensus 47 ~L~~~F~-~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (281)
+|...|+ +||+|++++|-.+.. -.-+|-++|.|..+|+|++|++.|| .++.|++|.+++...
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 4444455 899999987655432 3457889999999999999999976 779999999887753
No 119
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.67 E-value=0.0071 Score=56.31 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=69.9
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhC--CC-CC
Q 023475 20 QYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD--PT-PF 96 (281)
Q Consensus 20 ~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~--~~-~~ 96 (281)
....++-....+-.|.|++|-..++|.||.+.++.||.|.-|.++-.+. -+.|+|+|.+.|+.++.. .+ ..
T Consensus 20 e~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~ 93 (494)
T KOG1456|consen 20 EDNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIY 93 (494)
T ss_pred ccCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCccc
Confidence 3445566666778999999999999999999999999999887765533 799999999999999875 34 44
Q ss_pred cCCceeEEEeccCCC
Q 023475 97 IDGRRANCNLASLGR 111 (281)
Q Consensus 97 i~G~~i~V~~a~~~~ 111 (281)
|.|....+++++.++
T Consensus 94 i~gq~Al~NyStsq~ 108 (494)
T KOG1456|consen 94 IAGQQALFNYSTSQC 108 (494)
T ss_pred ccCchhhcccchhhh
Confidence 899988888886543
No 120
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.67 E-value=0.0044 Score=60.32 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=49.9
Q ss_pred HHHHHHhcCCCEeEEEEeeCCCC---CCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 023475 47 TMRRYFEQFGEILEAVVITDKNT---GRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (281)
Q Consensus 47 ~L~~~F~~~G~I~~v~v~~d~~t---g~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (281)
+++..+++||.|..|+|.++-.. .-..|-.||+|.+.+++++|+++|+ ..+.+|.|.+++-..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 35556678999999999887222 2345677999999999999999998 559999999988753
No 121
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.64 E-value=0.018 Score=48.97 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=60.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CC--cCCceeE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF--IDGRRAN 103 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~--i~G~~i~ 103 (281)
......+|.|.+||.+-++.||+++..+-|+|+...|.+| |.+.|+|...|+.+-||.+|. .. -.|....
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~y 183 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAY 183 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEee
Confidence 3445578999999999999999999999999999999887 388999999999999999865 22 4566655
Q ss_pred EEec
Q 023475 104 CNLA 107 (281)
Q Consensus 104 V~~a 107 (281)
+.+-
T Consensus 184 irv~ 187 (241)
T KOG0105|consen 184 IRVR 187 (241)
T ss_pred EEec
Confidence 5543
No 122
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.51 E-value=0.0015 Score=61.61 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=59.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC--CCcCCceeEEEeccC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDGRRANCNLASL 109 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~--~~i~G~~i~V~~a~~ 109 (281)
.+||++||.+.++.++|+.+|..--.-..-.++. ..||+||...+...|.+|++.++ .++.|++++|.....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4799999999999999999997641111111111 24799999999999999999987 349999999998876
Q ss_pred CCCCC
Q 023475 110 GRPRP 114 (281)
Q Consensus 110 ~~~~~ 114 (281)
++.+.
T Consensus 76 kkqrs 80 (584)
T KOG2193|consen 76 KKQRS 80 (584)
T ss_pred HHHHh
Confidence 65543
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.40 E-value=0.0051 Score=57.51 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=61.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCC---CCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEec
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDK---NTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~---~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (281)
...|-|.||..+++.++++.+|.-.|+|.+++|.-.. .-....-.|||.|.|...+..|-.+.|.++-++.|.|..+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 3489999999999999999999999999999886532 1123456899999999999999888887766666666554
No 124
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.38 E-value=0.016 Score=47.25 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=60.7
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcH-HH---HHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcC
Q 023475 23 NSPFGDTTYTKVFVGGLAWETQS-ET---MRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFID 98 (281)
Q Consensus 23 ~~~~~~~~~~~lfVgnLp~~~te-~~---L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~ 98 (281)
.....+....+|.|.=|..++.. +| +...++.||.|.+|.+. .|--|.|+|+|..+|.+|+.+.....-
T Consensus 78 kk~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s~~p 150 (166)
T PF15023_consen 78 KKNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQSRAP 150 (166)
T ss_pred cccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcCCCC
Confidence 44455667788889877766532 33 45566789999998653 233799999999999999999888889
Q ss_pred CceeEEEecc
Q 023475 99 GRRANCNLAS 108 (281)
Q Consensus 99 G~~i~V~~a~ 108 (281)
|..+.|+|-.
T Consensus 151 gtm~qCsWqq 160 (166)
T PF15023_consen 151 GTMFQCSWQQ 160 (166)
T ss_pred CceEEeeccc
Confidence 9999999863
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.27 E-value=0.0036 Score=62.26 Aligned_cols=83 Identities=18% Similarity=0.098 Sum_probs=66.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeE-EEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCce
Q 023475 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~ 101 (281)
.++.......|||..||..+++.++.++|++--.|++ |.|.+.. +++.++.|||+|..++++.+|+.... +.+.-+.
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ 505 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRI 505 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceE
Confidence 4566667789999999999999999999999888887 5555444 58889999999999888888877655 3466677
Q ss_pred eEEEec
Q 023475 102 ANCNLA 107 (281)
Q Consensus 102 i~V~~a 107 (281)
|+|.-.
T Consensus 506 irv~si 511 (944)
T KOG4307|consen 506 IRVDSI 511 (944)
T ss_pred EEeech
Confidence 777643
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.26 E-value=0.0037 Score=55.41 Aligned_cols=62 Identities=26% Similarity=0.427 Sum_probs=55.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
..|+|.||..-++.|.|++.|+.||.|+...++.|-. ++..+-++|.|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHhc
Confidence 7899999999999999999999999999887777754 7888889999999999999998864
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.16 E-value=0.018 Score=42.71 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=41.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
...+|. +|.++...||.++|+.||.|. |.++.|. -|||...+++.|+.++..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 455555 999999999999999999874 6677664 79999999999999887754
No 128
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.03 E-value=0.0064 Score=59.56 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=64.3
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHh-cCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCC--C--c
Q 023475 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP--F--I 97 (281)
Q Consensus 23 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~--~--i 97 (281)
.+|.....++.|+|.||-.-+|.-.|++++. ..|.|++.+|- +-|..|||.|.+.++|...+.+|+. + -
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD------kIKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD------KIKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH------HhhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 3455667788999999999999999999998 57777777432 2355899999999999999998762 2 5
Q ss_pred CCceeEEEeccC
Q 023475 98 DGRRANCNLASL 109 (281)
Q Consensus 98 ~G~~i~V~~a~~ 109 (281)
+.+.|.+.+...
T Consensus 510 NPK~L~adf~~~ 521 (718)
T KOG2416|consen 510 NPKHLIADFVRA 521 (718)
T ss_pred CCceeEeeecch
Confidence 678888888753
No 129
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.85 E-value=0.022 Score=51.57 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCCEeEEEEeeCCCCCCccc-EEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 45 SETMRRYFEQFGEILEAVVITDKNTGRSKG-YGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 45 e~~L~~~F~~~G~I~~v~v~~d~~tg~skG-~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
|+++++..++||.|..|.|..+..--..+- --||+|+..++|.+|+..+| ..+.||.++.-+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 456788899999999998877653323222 35999999999999999988 5589988765544
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.84 E-value=0.0095 Score=60.90 Aligned_cols=79 Identities=28% Similarity=0.387 Sum_probs=65.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCC--ceeE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDG--RRAN 103 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G--~~i~ 103 (281)
.....+.|||++|..++....|...|..||.|..|.+-.. --|++|.+++.+.++.|++.+... |.+ ++|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 3456789999999999999999999999999999877443 349999999999999999997644 544 7789
Q ss_pred EEeccCCC
Q 023475 104 CNLASLGR 111 (281)
Q Consensus 104 V~~a~~~~ 111 (281)
|.++...-
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 99987443
No 131
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.72 E-value=0.012 Score=57.25 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=59.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhc--CCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC---CCcCCcee
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQ--FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRA 102 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~--~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i 102 (281)
..+.|.|.|+.|+..+-+|+++.+|+. |-++++|++-.+. -=||+|++.++|++|.+.|. ++|-||.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 346678889999999999999999975 7788888876543 24999999999999988764 56899988
Q ss_pred EEEec
Q 023475 103 NCNLA 107 (281)
Q Consensus 103 ~V~~a 107 (281)
..++.
T Consensus 245 mARIK 249 (684)
T KOG2591|consen 245 MARIK 249 (684)
T ss_pred hhhhh
Confidence 65553
No 132
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.32 E-value=0.012 Score=53.71 Aligned_cols=83 Identities=18% Similarity=0.178 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...+++||+++.+++.+.++..+|...|.+..+.+........+++++.|.|...+.+..||+... ..+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 457899999999999999999999999998888888777778999999999999999999999865 4677777777666
Q ss_pred cCCC
Q 023475 108 SLGR 111 (281)
Q Consensus 108 ~~~~ 111 (281)
....
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 5443
No 133
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.11 E-value=0.012 Score=56.26 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=59.0
Q ss_pred CCcEEEEcCCCCCC-cHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWET-QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~-te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (281)
+.+.|-+.-.++.. +.++|..+|.+||+|+.|.|-.... .|.|+|.+..+|-+|-......|+++.|+|.|-+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEec
Confidence 34555555555553 5678999999999999998855433 7899999999998888887788999999999987
Q ss_pred C
Q 023475 109 L 109 (281)
Q Consensus 109 ~ 109 (281)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 5
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.92 E-value=0.011 Score=54.38 Aligned_cols=82 Identities=28% Similarity=0.414 Sum_probs=59.8
Q ss_pred CCCcEEEEcCCCCCCcHHHH---HHHHhcCCCEeEEEEeeCCC-CCCc--ccEEEEEEcCHHHHHHHHhCCCC-CcCCce
Q 023475 29 TTYTKVFVGGLAWETQSETM---RRYFEQFGEILEAVVITDKN-TGRS--KGYGFVTFREPEAARRACADPTP-FIDGRR 101 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L---~~~F~~~G~I~~v~v~~d~~-tg~s--kG~aFV~F~~~~~A~~Ai~~~~~-~i~G~~ 101 (281)
.....+||-+|+..+.++++ .+.|.+||.|..|.+.++.. .... -.-++|+|++.|+|..||...+. .++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 34467888899987766554 36788899999998877652 1111 12369999999999999999764 478888
Q ss_pred eEEEeccCC
Q 023475 102 ANCNLASLG 110 (281)
Q Consensus 102 i~V~~a~~~ 110 (281)
|++.+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 777776544
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.53 E-value=0.14 Score=37.03 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=38.4
Q ss_pred EEEEc-CCCCCCcHHHHHHHHhcCCC-----EeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 33 KVFVG-GLAWETQSETMRRYFEQFGE-----ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 33 ~lfVg-nLp~~~te~~L~~~F~~~G~-----I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
+|||. +--..++..+|..++..-+. |-+|+|..+ |+||+... +.|+++++.++ ..++|++|+|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 23456888999999987654 446666544 88998875 47888888866 56999999998
Q ss_pred ec
Q 023475 106 LA 107 (281)
Q Consensus 106 ~a 107 (281)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 136
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.99 E-value=0.25 Score=45.05 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=47.9
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCcee-EEEe
Q 023475 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA-NCNL 106 (281)
Q Consensus 34 lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i-~V~~ 106 (281)
|-|=+++..-. ..|..+|++||+|++.... ..-.+-.|.|.++.+|+|||.+...+|+|..+ -|+.
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 33445555433 4567889999999877543 22348899999999999999998888887654 4444
No 137
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.98 E-value=0.92 Score=35.54 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=44.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcC-CCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 023475 33 KVFVGGLAWETQSETMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
.+.+...+..++.++|..+.+.+ ..|+.++|++|. ..++=.+.++|.+.++|++..+..|
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhC
Confidence 33444455666667777666665 467788999984 3467788999999999999998865
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.67 E-value=0.22 Score=42.63 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=43.4
Q ss_pred cHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC--CC-cCCceeEEEecc
Q 023475 44 QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PF-IDGRRANCNLAS 108 (281)
Q Consensus 44 te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~--~~-i~G~~i~V~~a~ 108 (281)
..+.|+++|..++.+....+++.- +-..|.|.+.++|.+|...++ .. +.|+.|+|-++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 457899999999999888777653 357899999999999999977 44 999999998884
No 139
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.15 E-value=0.048 Score=54.25 Aligned_cols=71 Identities=21% Similarity=0.208 Sum_probs=60.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
-....+|||+||...+.++.++.++..+|.|..++.++ |+|..|.++....+|+..+. ..+++..+.++.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34567899999999999999999999999988876544 99999999999999999987 458888887665
Q ss_pred c
Q 023475 107 A 107 (281)
Q Consensus 107 a 107 (281)
.
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 3
No 140
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.61 E-value=0.16 Score=49.66 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=53.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhc----------------------------CCCEeEEEEeeCCCCCCcccEEEEEE
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQ----------------------------FGEILEAVVITDKNTGRSKGYGFVTF 80 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~----------------------------~G~I~~v~v~~d~~tg~skG~aFV~F 80 (281)
..-.++-|+||+......+|.++.+. .|.-..+.+..|-.+....|||||.|
T Consensus 359 ~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm 438 (549)
T KOG4660|consen 359 DRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINM 438 (549)
T ss_pred cchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEee
Confidence 34456667777776666666665543 22233455666767788899999999
Q ss_pred cCHHHHHHHHhCCC--CC--cCCce-eEEEecc
Q 023475 81 REPEAARRACADPT--PF--IDGRR-ANCNLAS 108 (281)
Q Consensus 81 ~~~~~A~~Ai~~~~--~~--i~G~~-i~V~~a~ 108 (281)
.+.+++.++.++.+ ++ +.+++ ++|.+|.
T Consensus 439 ~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 439 TSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 99999999988854 22 55443 4677765
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.45 E-value=0.12 Score=52.91 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=60.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CC--cCCceeEEEecc
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF--IDGRRANCNLAS 108 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~--i~G~~i~V~~a~ 108 (281)
.+..+-|.+-+.+...|..+|++||+|.+++.++|-+ .|.|+|.+.+.|..|++++. ++ +.|-+.+|.+|+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 4556677788889999999999999999999988865 89999999999999999975 33 677788888885
No 142
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.09 E-value=0.17 Score=42.94 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=46.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhc-CCCE---eEEEEeeC-CCCCC-cccEEEEEEcCHHHHHHHHhCCCC-C-cCC-
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQ-FGEI---LEAVVITD-KNTGR-SKGYGFVTFREPEAARRACADPTP-F-IDG- 99 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~-~G~I---~~v~v~~d-~~tg~-skG~aFV~F~~~~~A~~Ai~~~~~-~-i~G- 99 (281)
....+|.|++||.++||+++.+.++. ++.. ..+.-... ..... .-.-|+|.|.+.+++...+...+. . ++.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34569999999999999999987776 5554 23321111 11111 234689999999999888887653 2 332
Q ss_pred ---ceeEEEeccC
Q 023475 100 ---RRANCNLASL 109 (281)
Q Consensus 100 ---~~i~V~~a~~ 109 (281)
.+..|++|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2346666654
No 143
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.73 E-value=1.5 Score=31.08 Aligned_cols=54 Identities=13% Similarity=0.321 Sum_probs=39.0
Q ss_pred CCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCC-CcCCceeE
Q 023475 41 WETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRAN 103 (281)
Q Consensus 41 ~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~G~~i~ 103 (281)
..++-++|+..+.+|.- .+|+.|+ .|| ||.|.+.++|+++....+. .+...+|.
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 35778999999999963 3344554 233 8999999999999998763 35544443
No 144
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.46 E-value=1.3 Score=42.08 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=53.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCC-EeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCce
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGE-ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRR 101 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~ 101 (281)
+-.+.|-|-+++.....+||...|+.|++ -.+|+|+.|. .+|..|.+...|..||..-+.+|.=|.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIRP 455 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEeee
Confidence 35678889999999999999999999964 4578888775 799999999999999988554444333
No 145
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.31 E-value=4.5 Score=40.21 Aligned_cols=79 Identities=16% Similarity=0.335 Sum_probs=56.6
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcC----CCEeEEEEeeCC----------CCCC---------------------
Q 023475 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQF----GEILEAVVITDK----------NTGR--------------------- 71 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~I~~v~v~~d~----------~tg~--------------------- 71 (281)
...+++|-|.||.|+ +..++|.-+|+.| |.|++|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 567889999999997 7888999999876 589998874321 0111
Q ss_pred ---------------cc-cEEEEEEcCHHHHHHHHhCCCCC-cC--CceeEEEe
Q 023475 72 ---------------SK-GYGFVTFREPEAARRACADPTPF-ID--GRRANCNL 106 (281)
Q Consensus 72 ---------------sk-G~aFV~F~~~~~A~~Ai~~~~~~-i~--G~~i~V~~ 106 (281)
.| =||.|+|++.+.|.+.-+.+.++ +. +..|.+++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 11 26899999999999999998743 44 34444444
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=82.84 E-value=0.22 Score=43.49 Aligned_cols=67 Identities=27% Similarity=0.320 Sum_probs=55.6
Q ss_pred CCCCCCCcEEEEcC----CCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhC
Q 023475 25 PFGDTTYTKVFVGG----LAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (281)
Q Consensus 25 ~~~~~~~~~lfVgn----Lp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (281)
-++++...+++.|+ |...++++.+.+.|+.-+.|+.+++.++.+ ++++.++||++.-..+.-.++..
T Consensus 74 l~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 74 LEEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred hccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhh
Confidence 34566678899999 999999999999999999999999998876 88999999988766555555543
No 147
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=82.53 E-value=3.9 Score=29.10 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=42.8
Q ss_pred HHHHHHHhcCC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 46 ETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 46 ~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
++|++.|...| .|.+|.-++.+.+.+.--.-||+++...+.+ +.++ +.|++.+|+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCC
Confidence 56777887777 6778888887766777778888887655422 2334 45889999998764
No 148
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=81.01 E-value=4.7 Score=36.73 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=36.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCE-eEEEEeeCCCCCCcccEEEEEEcCH
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEI-LEAVVITDKNTGRSKGYGFVTFREP 83 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I-~~v~v~~d~~tg~skG~aFV~F~~~ 83 (281)
..+-|+|+||+.++.-.||+..+.+-+.+ .++.+ .-++|-||++|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 34569999999999999999999887643 23333 23467899999765
No 149
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=79.72 E-value=4 Score=29.17 Aligned_cols=60 Identities=10% Similarity=0.151 Sum_probs=42.8
Q ss_pred HHHHHHHhcCC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 46 ETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 46 ~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
++|++.|.+.| .++.+..++.+.++..-..-||+.....+... .++ +.|++++|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888887 67888888887777666777888876543332 233 45899998888653
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=74.60 E-value=0.42 Score=45.09 Aligned_cols=66 Identities=15% Similarity=0.035 Sum_probs=51.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcC
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFID 98 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~ 98 (281)
+..++|+|.+|...+...++-++|..+|+|....+.. +...-+|-|.|........|+..++.++.
T Consensus 149 eirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 149 EIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred HHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 3447899999999999999999999999987665543 23345778999988888888888764433
No 151
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.11 E-value=12 Score=36.25 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=52.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcC-CCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
.+.|+|=.+|..++-.||..|...+ -.|.+++|++|.. .++=..+|+|.+.++|...-+..|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcC
Confidence 6788998999999999999998765 4688999999742 344467999999999999998866
No 152
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=72.29 E-value=7.1 Score=35.68 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=60.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCC-------CCCCcccEEEEEEcCHHHHHHH----HhCCC--
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDK-------NTGRSKGYGFVTFREPEAARRA----CADPT-- 94 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~-------~tg~skG~aFV~F~~~~~A~~A----i~~~~-- 94 (281)
.-..+.|.+.||..+++--.+...|.+||.|+.|.++.+. ...+......+.|-+.+.+... ++.+.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 4467889999999999988899999999999999999875 1123345678899888876553 23332
Q ss_pred -CCcCCceeEEEeccC
Q 023475 95 -PFIDGRRANCNLASL 109 (281)
Q Consensus 95 -~~i~G~~i~V~~a~~ 109 (281)
..+....|.|++..-
T Consensus 92 K~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSL 107 (309)
T ss_pred HHhcCCcceeEEEEEE
Confidence 347788887776653
No 153
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=71.64 E-value=4.5 Score=31.93 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=27.2
Q ss_pred cHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCH-HHHHHHHh
Q 023475 44 QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP-EAARRACA 91 (281)
Q Consensus 44 te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~-~~A~~Ai~ 91 (281)
+.++|++.|+.|..++ ++.+.++ .-+.|+++|+|.+. .--+.|++
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4578999999998764 6666665 36789999999743 34444443
No 154
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=63.96 E-value=6.7 Score=33.42 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=50.3
Q ss_pred CCCcEEEEcCCCCCCcH-----HHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCc-e
Q 023475 29 TTYTKVFVGGLAWETQS-----ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR-R 101 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te-----~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~-~ 101 (281)
+-.+++++.+|..++-. .....+|..|-+.....+++. ++..-|.|.+.+.|.+|..++. ..+.|+ .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 34556778888765432 234456666665555445443 3456689999999999998876 558888 7
Q ss_pred eEEEeccC
Q 023475 102 ANCNLASL 109 (281)
Q Consensus 102 i~V~~a~~ 109 (281)
+++-++..
T Consensus 82 ~k~yfaQ~ 89 (193)
T KOG4019|consen 82 LKLYFAQP 89 (193)
T ss_pred EEEEEccC
Confidence 88877754
No 155
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=62.92 E-value=0.99 Score=44.42 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=46.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhC
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (281)
....|+|||.|+..+++-++|..+++.+-.+.++.+..+..-.+.+-+.+|+|+--...+.||.+
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~a 292 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWA 292 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHH
Confidence 35678999999999999999999999987666665544433344556788999744433444433
No 156
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=62.22 E-value=12 Score=31.95 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=45.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHH
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai 90 (281)
.........+++.+++..++++++..+|..++.+..+.+...........+.++.+.....+...+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 219 ALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred cccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 344557789999999999999999999999999977777665443333444444444433333333
No 157
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=61.26 E-value=72 Score=32.52 Aligned_cols=70 Identities=10% Similarity=0.009 Sum_probs=49.6
Q ss_pred CcEEEEc-CCCCCCcHHHHHHHHhcCCCEe-----EEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 31 YTKVFVG-GLAWETQSETMRRYFEQFGEIL-----EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 31 ~~~lfVg-nLp~~~te~~L~~~F~~~G~I~-----~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
..++||. +=...++..+|..++..-+.|. .|+|..+ |.||+... +.|.+.++.++ ..|.|++|.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceE
Confidence 3456654 3346788888988888766554 4555433 88999865 45788888875 569999999
Q ss_pred EEeccC
Q 023475 104 CNLASL 109 (281)
Q Consensus 104 V~~a~~ 109 (281)
|+.+..
T Consensus 557 ~~~~~~ 562 (629)
T PRK11634 557 MQLLGD 562 (629)
T ss_pred EEECCC
Confidence 998853
No 158
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.84 E-value=1.6 Score=41.87 Aligned_cols=76 Identities=7% Similarity=-0.137 Sum_probs=58.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
.+.|+..|+..+++++|.-+|..||.|..+.+-+.-+.+..+-.+||+-.+ +.+..+|..+. ..+.+..++|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456788899999999999999999999988876655556677788988765 34666776655 44777788887775
No 159
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=57.42 E-value=25 Score=24.60 Aligned_cols=18 Identities=39% Similarity=0.700 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCCEeEEEE
Q 023475 46 ETMRRYFEQFGEILEAVV 63 (281)
Q Consensus 46 ~~L~~~F~~~G~I~~v~v 63 (281)
++||++|+..|+|.-+-|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999987655
No 160
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=54.14 E-value=63 Score=21.53 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=40.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCH----HHHHHHHhCC
Q 023475 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP----EAARRACADP 93 (281)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~----~~A~~Ai~~~ 93 (281)
+|.|.||.=.--...|++.+.+.-.|.++.+-... +-.-|+|+.. ++..++|++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHh
Confidence 46777887777788999999999889999886653 3677888744 5566666553
No 161
>PRK11901 hypothetical protein; Reviewed
Probab=54.00 E-value=25 Score=32.73 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=37.9
Q ss_pred CCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEE--EEEEcCHHHHHHHHhCCCCCc
Q 023475 38 GLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG--FVTFREPEAARRACADPTPFI 97 (281)
Q Consensus 38 nLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~a--FV~F~~~~~A~~Ai~~~~~~i 97 (281)
-|--..+++.|++|.++.+ +..++|.+.+.+|+.- |. +=.|.+.++|++||+.|-..|
T Consensus 249 QL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 249 QLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred EeecCCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3444566888888888775 4556665543334332 22 236899999999999987443
No 162
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=53.41 E-value=16 Score=27.40 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=24.7
Q ss_pred EEEEEcCHHHHHHHHhCCCC--CcCCceeEEEec
Q 023475 76 GFVTFREPEAARRACADPTP--FIDGRRANCNLA 107 (281)
Q Consensus 76 aFV~F~~~~~A~~Ai~~~~~--~i~G~~i~V~~a 107 (281)
|.|+|.+.+.|++.|+.-.+ .+++..+.|+..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 68999999999999988542 377777766554
No 163
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=52.36 E-value=13 Score=33.88 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=27.2
Q ss_pred CCCcEEEEcCCCC------------CCcHHHHHHHHhcCCCEeEEEEe
Q 023475 29 TTYTKVFVGGLAW------------ETQSETMRRYFEQFGEILEAVVI 64 (281)
Q Consensus 29 ~~~~~lfVgnLp~------------~~te~~L~~~F~~~G~I~~v~v~ 64 (281)
....+|++.+||- --+|+.|+..|+.||+|..|.|.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3456777777763 24677899999999999988774
No 164
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=52.21 E-value=14 Score=33.78 Aligned_cols=32 Identities=22% Similarity=0.129 Sum_probs=23.5
Q ss_pred EEEEEcCHHHHHHHHhCCCCCcCCceeEEEecc
Q 023475 76 GFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (281)
Q Consensus 76 aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (281)
|||+|++.++|+.|++.... .+.++++|+.|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KRPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CCCCCceEeeCC
Confidence 69999999999999996432 223555777764
No 165
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=46.73 E-value=2.5 Score=28.87 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=20.7
Q ss_pred cccEEEEEEcC-HHHHHHHHhCCCCCcCCceeEEEecc
Q 023475 72 SKGYGFVTFRE-PEAARRACADPTPFIDGRRANCNLAS 108 (281)
Q Consensus 72 skG~aFV~F~~-~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (281)
.+|||||.-++ .++.--.-+.++..++|-++.|++..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 58999999987 11111111234456888888888775
No 166
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=45.16 E-value=9.1 Score=36.46 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=52.2
Q ss_pred CCCCcEEEEcCCCCCCcHH--------HHHHHHhc--CCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHh
Q 023475 28 DTTYTKVFVGGLAWETQSE--------TMRRYFEQ--FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~--------~L~~~F~~--~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~ 91 (281)
+...+.+|+.++..+.+.+ +|...|.. .+.+.-+..-+|..+..++|-.|++|...+.+++.+.
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3345678888888776665 89999988 6777788888887678889999999999999999994
No 167
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=44.36 E-value=30 Score=29.56 Aligned_cols=58 Identities=17% Similarity=0.067 Sum_probs=36.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcC-CCEeEEEEeeCCCCC--CcccEEEEEEcCHHHHHHHHhCCC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQF-GEILEAVVITDKNTG--RSKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~v~~d~~tg--~skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
.+++|.. .|++.|.++..-- |.+..|..-+... + ..+|-.||+|.+.+.|.++++...
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~-k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGN-KAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCC-CCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 3455544 4555554443221 6777776544322 3 568899999999999999887743
No 168
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=43.21 E-value=17 Score=32.75 Aligned_cols=79 Identities=11% Similarity=0.194 Sum_probs=57.6
Q ss_pred CCCCcEEEEcCCCCCCcHHH-H--HHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 28 DTTYTKVFVGGLAWETQSET-M--RRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~-L--~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
+.....+|++++-..+..+- | ...|+.+-.+...+++++.. +..++++|+.|...+.-.++..+-+ +.|.-..|+
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR 171 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVR 171 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCccee
Confidence 34566778888877776665 4 78888888888888888875 7889999999998887777776644 445555555
Q ss_pred EEec
Q 023475 104 CNLA 107 (281)
Q Consensus 104 V~~a 107 (281)
+.-+
T Consensus 172 ~a~g 175 (290)
T KOG0226|consen 172 LAAG 175 (290)
T ss_pred eccc
Confidence 4433
No 169
>PRK10905 cell division protein DamX; Validated
Probab=42.80 E-value=34 Score=31.79 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=37.2
Q ss_pred EEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcc-cEEEEEEcCHHHHHHHHhCCCCCc
Q 023475 35 FVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSK-GYGFVTFREPEAARRACADPTPFI 97 (281)
Q Consensus 35 fVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~sk-G~aFV~F~~~~~A~~Ai~~~~~~i 97 (281)
|+--|--..+++.|++|..+.+ +....+.....+|+.. -.-+=.|.+.++|++||+.|-..|
T Consensus 248 YTLQL~A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 248 YTLQLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred eEEEEEecCCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 3333444556788888888775 3433343332224322 112337899999999999986443
No 170
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=42.39 E-value=98 Score=22.93 Aligned_cols=55 Identities=11% Similarity=0.150 Sum_probs=38.6
Q ss_pred EcCCCCCCcHHHHHHHHhc-CC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 023475 36 VGGLAWETQSETMRRYFEQ-FG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (281)
Q Consensus 36 VgnLp~~~te~~L~~~F~~-~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~ 93 (281)
+=.++.+.+..+|++.+++ |+ .|.+|..+.-+. ..-=|||++.+.++|.+....+
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 3346889999999999987 55 566665554431 1225899999988888876554
No 171
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=41.89 E-value=61 Score=24.16 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=32.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEc
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~ 81 (281)
..-|||++++..+.|.....+.+..++-. +.++.... ...||.|-+.-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~-a~m~~~~~--neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGS-AVMVWSDN--NEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCcc-EEEEEccC--CCCCEEEEEeC
Confidence 45699999999998887777666544332 33333322 26789998874
No 172
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=39.95 E-value=22 Score=22.08 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=10.6
Q ss_pred CCCcHHHHHHHHhcCC
Q 023475 41 WETQSETMRRYFEQFG 56 (281)
Q Consensus 41 ~~~te~~L~~~F~~~G 56 (281)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998764
No 173
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=39.32 E-value=3.9 Score=39.20 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=60.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEE-eeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVV-ITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v-~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
..++++-|.|++....++.|..++..||.++.|.+ ..|.. .-..-|++.+.+.++.||.+++ ..++...++|.+
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 34677889999999999999999999999998865 33432 1233478889999999999987 458888888887
Q ss_pred cc
Q 023475 107 AS 108 (281)
Q Consensus 107 a~ 108 (281)
-.
T Consensus 154 iP 155 (584)
T KOG2193|consen 154 IP 155 (584)
T ss_pred Cc
Confidence 64
No 174
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=38.19 E-value=1.4e+02 Score=21.75 Aligned_cols=57 Identities=12% Similarity=0.161 Sum_probs=38.7
Q ss_pred EEEcCCCCCCcHHHHHHHHhc-CC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 023475 34 VFVGGLAWETQSETMRRYFEQ-FG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (281)
Q Consensus 34 lfVgnLp~~~te~~L~~~F~~-~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~ 93 (281)
-|+=.++.+.+..+|++.++. |+ .|.+|..+.-+. ..-=|||++..-++|.+.-.++
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 344457889999999999987 55 455665544331 1224899999888887765543
No 175
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=37.61 E-value=39 Score=23.76 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=25.6
Q ss_pred CCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEE
Q 023475 42 ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 78 (281)
Q Consensus 42 ~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV 78 (281)
..-|.+|.++|-+--+|+++.|...| ...+|-|||
T Consensus 29 ~~~e~eler~fl~~P~v~e~~l~EKK--ri~~G~gyV 63 (64)
T PF13046_consen 29 RLVEVELERHFLPLPEVKEVALYEKK--RIRKGAGYV 63 (64)
T ss_pred HHHHHHhhhhccCCCCceEEEEEEEE--eeeCCceeE
Confidence 34456788888888899999888765 344566666
No 176
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=37.59 E-value=19 Score=27.04 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=20.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHH
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYF 52 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F 52 (281)
....++|.|.|||..++||+|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 3456789999999999999999744
No 177
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=37.06 E-value=61 Score=24.01 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=21.3
Q ss_pred CEeEEEEeeCCCCCCcccEEEEEEcC
Q 023475 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (281)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~aFV~F~~ 82 (281)
+|++|+|-.-...++-|+||=|+|++
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888887766668999999999987
No 178
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=36.85 E-value=1.3e+02 Score=24.00 Aligned_cols=48 Identities=19% Similarity=0.359 Sum_probs=29.2
Q ss_pred CCCcHHHHHHHHhc-CCCEeEEE----EeeCCCCCCcccEEEEEEcCHHHHHHH
Q 023475 41 WETQSETMRRYFEQ-FGEILEAV----VITDKNTGRSKGYGFVTFREPEAARRA 89 (281)
Q Consensus 41 ~~~te~~L~~~F~~-~G~I~~v~----v~~d~~tg~skG~aFV~F~~~~~A~~A 89 (281)
.+++.+||++-+.+ |-.-.++. +-..--+|++.|||.| |++.|.|++.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 46788888887765 32222222 2233345778888876 6777766553
No 179
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=34.68 E-value=37 Score=25.44 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=29.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcC-CCEeEEEEeeCCCCCCcccEEEEEEcC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFRE 82 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~v~~d~~tg~skG~aFV~F~~ 82 (281)
..-|||++++..+.|.....+-+.| ++ -.+.++... ....||.|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~~--~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWSS--NTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEeC--CCCCCcEEEecCC
Confidence 4569999999998876555544442 22 123333322 2345798887765
No 180
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.56 E-value=71 Score=31.54 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=44.0
Q ss_pred EEcCCCCCCc---HHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCcee
Q 023475 35 FVGGLAWETQ---SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA 102 (281)
Q Consensus 35 fVgnLp~~~t---e~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i 102 (281)
+||||..-.. ...|.++=++||.|-.+++-.. -.|...+.+.|++|+...+..+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 5788765433 3456666678999998877433 278889999999999998777777764
No 181
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=33.39 E-value=99 Score=23.67 Aligned_cols=47 Identities=28% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHhc-CCCEeEEEEeeCCC----CCCcccEEEEEEcCHHHHHH
Q 023475 41 WETQSETMRRYFEQ-FGEILEAVVITDKN----TGRSKGYGFVTFREPEAARR 88 (281)
Q Consensus 41 ~~~te~~L~~~F~~-~G~I~~v~v~~d~~----tg~skG~aFV~F~~~~~A~~ 88 (281)
.+.+..+|++-+.+ |+.=.++.|+..-. .+++.|||.| |+|.+.|++
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 36778888877754 55323333333322 2345555544 555555443
No 182
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=32.98 E-value=36 Score=30.29 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=28.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEA 61 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v 61 (281)
....++||+-|||..++++.|.++.+..|.+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 4456789999999999999999999998855443
No 183
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=32.31 E-value=82 Score=24.07 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=32.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCH
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~ 83 (281)
..-||||+++..+.|.....+-+.+++ -++.++. ..+.+. ||.|.++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~-~~~~eq-G~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAW-ATNTES-GFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEE-cCCCCC-CcEEEecCCC
Confidence 456999999999987766666555543 2233333 222344 9999988753
No 184
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=30.91 E-value=7.2 Score=27.71 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhc
Q 023475 15 SSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQ 54 (281)
Q Consensus 15 sss~~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~ 54 (281)
.+..+.+....+-....++||||.+|..+-++.=..++..
T Consensus 11 TA~rL~y~Sp~~Ls~tSr~vflG~IP~~W~~~~~~~~~k~ 50 (67)
T PF15407_consen 11 TAFRLSYASPEELSLTSRRVFLGPIPEIWLQDHRKSWYKS 50 (67)
T ss_pred HHHHHhcCCHHHHHHcCceEEECCCChHHHHcCcchHHHH
Confidence 3345556666666778899999999998877765555544
No 185
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=30.15 E-value=1.6e+02 Score=19.03 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=29.1
Q ss_pred HHHHHHHhcCC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHh
Q 023475 46 ETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91 (281)
Q Consensus 46 ~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~ 91 (281)
.++-+.|.+.+ .|+.+.+.... ..+....+++++.+.|.++++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l~ 56 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVLK 56 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHhC
Confidence 45566777665 67777655432 345677888899888888764
No 186
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=29.67 E-value=3.8e+02 Score=28.99 Aligned_cols=14 Identities=7% Similarity=0.216 Sum_probs=6.1
Q ss_pred EEEEcCHHHHHHHH
Q 023475 77 FVTFREPEAARRAC 90 (281)
Q Consensus 77 FV~F~~~~~A~~Ai 90 (281)
.|+|.=..+|.+||
T Consensus 1085 WIklqIshEaAAcI 1098 (1282)
T KOG0921|consen 1085 WIKLQISHEAAACI 1098 (1282)
T ss_pred eeeEeccHHHHHHH
Confidence 44555334444433
No 187
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=29.57 E-value=2.8e+02 Score=22.14 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=42.6
Q ss_pred EEEEcCCCCC---CcHHHHHHHHhcCC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCC-ceeEEEec
Q 023475 33 KVFVGGLAWE---TQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDG-RRANCNLA 107 (281)
Q Consensus 33 ~lfVgnLp~~---~te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G-~~i~V~~a 107 (281)
.|-|...... .+-+.+.+.+++-| .++++....+ -..|.|++.|+..+|.+.+...+.. ..|.++++
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4555544222 56677888888776 3445444332 5689999999988888877655533 45555555
No 188
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=29.14 E-value=88 Score=23.79 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=20.4
Q ss_pred CEeEEEEeeCCCCCCcccEEEEEEcC
Q 023475 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (281)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~aFV~F~~ 82 (281)
+|++|+|-.-...++-|+||-|+|++
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47788776554458889999999987
No 189
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.84 E-value=2.7e+02 Score=23.07 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=38.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcC---CCEeEEEEeeCCCC---------CCccc-EEEEEEcCHHH
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQF---GEILEAVVITDKNT---------GRSKG-YGFVTFREPEA 85 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~---G~I~~v~v~~d~~t---------g~skG-~aFV~F~~~~~ 85 (281)
.+|++.-+..-++|++.++..++- ++|++|.+-+.+.+ .+.|. |-+|.|++-+.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 689999999999999999999875 46666666544321 22344 78889987554
No 190
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=28.83 E-value=78 Score=24.78 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=19.7
Q ss_pred CCCCCcHHHHHHHHhcCCCEeEEEEe
Q 023475 39 LAWETQSETMRRYFEQFGEILEAVVI 64 (281)
Q Consensus 39 Lp~~~te~~L~~~F~~~G~I~~v~v~ 64 (281)
+...+|+++|++.|.+|-.-.++.|+
T Consensus 41 v~~~Tt~~eiedaF~~f~~RdDIaIi 66 (121)
T KOG3432|consen 41 VDSKTTVEEIEDAFKSFTARDDIAII 66 (121)
T ss_pred EeccCCHHHHHHHHHhhccccCeEEE
Confidence 35689999999999999664455443
No 191
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=28.52 E-value=1.1e+02 Score=27.23 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHh
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFE 53 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~ 53 (281)
....++|+|||.++++..|.+++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhh
Confidence 356789999999999999999987
No 192
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.61 E-value=6e+02 Score=25.00 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=7.1
Q ss_pred HHHHHhcCCCEe
Q 023475 48 MRRYFEQFGEIL 59 (281)
Q Consensus 48 L~~~F~~~G~I~ 59 (281)
|-.+|+-||.|.
T Consensus 247 lG~I~EiFGpV~ 258 (483)
T KOG2236|consen 247 LGQIFEIFGPVK 258 (483)
T ss_pred chhhhhhhcccC
Confidence 445666666654
No 193
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=27.44 E-value=81 Score=30.44 Aligned_cols=41 Identities=15% Similarity=0.429 Sum_probs=31.5
Q ss_pred CCCCCCCCcEEEEcCCCCC-CcHHHHHHHHhcC----CCEeEEEEe
Q 023475 24 SPFGDTTYTKVFVGGLAWE-TQSETMRRYFEQF----GEILEAVVI 64 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~I~~v~v~ 64 (281)
.++.-...++|-|-||.|+ +...+|..+|+.| |.|..|.|.
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 3444566788999999986 7888999999876 577777753
No 194
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=26.54 E-value=2.1e+02 Score=19.29 Aligned_cols=47 Identities=13% Similarity=0.209 Sum_probs=31.4
Q ss_pred cHHHHHHHHhcCC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 023475 44 QSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 44 te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
.-.+|-++|.+.| .|+.+.+.... . ++.--+.+++.+.|.++|++.+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~G 61 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEAG 61 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHCC
Confidence 3456778887766 67777654432 2 4666667788878888887754
No 195
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=26.40 E-value=2e+02 Score=20.05 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCEeEEEEeeCCCCCCc-ccEEEEEEcCHHHHHHHHhCC
Q 023475 46 ETMRRYFEQFGEILEAVVITDKNTGRS-KGYGFVTFREPEAARRACADP 93 (281)
Q Consensus 46 ~~L~~~F~~~G~I~~v~v~~d~~tg~s-kG~aFV~F~~~~~A~~Ai~~~ 93 (281)
++|++.+.++| +.-+++ . |-. -++.|+.+++.+.++++++.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~-s----GsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKM-S----GSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEE-E----TTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceec-C----CCCCCCeEEEEECCHHHHHHHHHHH
Confidence 35677778888 444444 2 221 457788888888888887654
No 196
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=25.98 E-value=1.8e+02 Score=28.81 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=35.2
Q ss_pred cHHHHHHHHh----cCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhC
Q 023475 44 QSETMRRYFE----QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (281)
Q Consensus 44 te~~L~~~F~----~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (281)
+.-+|..+|. .+|.|+++.+...+. -+.+...++.|.+.+++.+++..
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~ 253 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGD 253 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHH
Confidence 3457777775 578899887766543 33455778899999999998866
No 197
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=25.50 E-value=2.6e+02 Score=20.73 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhC
Q 023475 45 SETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (281)
Q Consensus 45 e~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (281)
.+.+++++++.| +++++.+.. |..--...+++.|.+.|.++.-.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~ 66 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLA 66 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHH
Confidence 456778888775 777777765 34345678889999888877644
No 198
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.56 E-value=1.4e+02 Score=24.68 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=38.1
Q ss_pred CCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 023475 38 GLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 38 nLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
.|+..+.++.|.++-+..|.|.+.+ -.|. .+.|.|.+..++||+++.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D~---------V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYDL---------VAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-eccE---------EEEeccHHHHHHHHHHHH
Confidence 4888999999999999999888775 3342 567889999999998743
No 199
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=24.46 E-value=2.7e+02 Score=20.00 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=35.6
Q ss_pred EcCCCCCCcHHHHHHHH-------hcCCCEeEEEEeeCCCCCC-ccc--EE-EEEEcCHHHHHHHHhC
Q 023475 36 VGGLAWETQSETMRRYF-------EQFGEILEAVVITDKNTGR-SKG--YG-FVTFREPEAARRACAD 92 (281)
Q Consensus 36 VgnLp~~~te~~L~~~F-------~~~G~I~~v~v~~d~~tg~-skG--~a-FV~F~~~~~A~~Ai~~ 92 (281)
+-.|..+++++++.+++ .+.-.|+++.+-++..... .++ ++ +++|+|.++-+.-...
T Consensus 6 lfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~~h 73 (97)
T PF07876_consen 6 LFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQTH 73 (97)
T ss_dssp EEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHHTS
T ss_pred EEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHHcC
Confidence 33577788887775544 3456788888776654332 244 44 5688988877665543
No 200
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=23.98 E-value=51 Score=26.29 Aligned_cols=72 Identities=10% Similarity=-0.016 Sum_probs=44.8
Q ss_pred cEEEEcCCC--CCCcHHHHHHHHhcC-CCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEecc
Q 023475 32 TKVFVGGLA--WETQSETMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (281)
Q Consensus 32 ~~lfVgnLp--~~~te~~L~~~F~~~-G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (281)
+...|+.+- .+++-+.|.+.+.+. +....+++..- ..++..+.|.++++++++++.-...+++..|.++.-+
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWS 90 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhc
Confidence 345555542 345666676666542 22223333221 2358899999999999999986666777777666554
No 201
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=23.94 E-value=1.5e+02 Score=22.40 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCcHHHHH---HHHhcCCCEeEEEE--eeCCCCCCcccEEEEEEc
Q 023475 33 KVFVGGLAWETQSETMR---RYFEQFGEILEAVV--ITDKNTGRSKGYGFVTFR 81 (281)
Q Consensus 33 ~lfVgnLp~~~te~~L~---~~F~~~G~I~~v~v--~~d~~tg~skG~aFV~F~ 81 (281)
..|+.+||.++.+.++. +.|..+..-..|.+ ........+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 45889999999887765 45545543223322 223445677787766554
No 202
>PHA03008 hypothetical protein; Provisional
Probab=23.70 E-value=1.4e+02 Score=26.06 Aligned_cols=41 Identities=12% Similarity=0.328 Sum_probs=33.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEe
Q 023475 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVI 64 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~ 64 (281)
...-++...-+||.|+..--+...++-+|.+|..+.++..+
T Consensus 14 ~~~~~~~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifv 54 (234)
T PHA03008 14 NNKIDEICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFV 54 (234)
T ss_pred ccCCcccccEEEEecccccccccHHHHHHhhccccceEEEc
Confidence 34446677789999999999999999999999988877543
No 203
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=23.31 E-value=1.7e+02 Score=24.14 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=40.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHH
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRA 89 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~A 89 (281)
+.-..+||+|.-+..--++.-+++|+.|- .|.+|.+.++.....-+....+...+..+.++.
T Consensus 84 ~~~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 84 ERFELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 44456789998766666667789999985 677887777653234455666666655555444
No 204
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=23.12 E-value=2e+02 Score=24.81 Aligned_cols=45 Identities=29% Similarity=0.365 Sum_probs=29.8
Q ss_pred cHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhC
Q 023475 44 QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (281)
Q Consensus 44 te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (281)
+.++.++++..+..-. +.|-.| +...|=+.+...+.++|.++|+.
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~ 69 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALRE 69 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHH
Confidence 5677788887766433 333334 44444446666999999999987
No 205
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=23.06 E-value=2.6e+02 Score=20.71 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=22.1
Q ss_pred EEEEcCHHHHHHHHhCCCCCcCCceeEEE
Q 023475 77 FVTFREPEAARRACADPTPFIDGRRANCN 105 (281)
Q Consensus 77 FV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (281)
.|.|.+-++.+..|+.+...|....|++.
T Consensus 44 ~vvfGd~~~i~~~Le~~~~~I~~y~iE~d 72 (83)
T PF08503_consen 44 GVVFGDWDEIKPFLEANKDKIEDYRIEND 72 (83)
T ss_dssp EEEEEEHHHHHHHHHHTTTTEEEEEEEE-
T ss_pred EEEEecHHHHHHHHHhchhhCcEEEEEec
Confidence 38899999999999987766776665544
No 206
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=22.92 E-value=70 Score=32.57 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=58.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCcee
Q 023475 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA 102 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i 102 (281)
.+..+....+||+-|--..-+..-|..++..+++++.++++.+...+....-++.+|.-...+..|....+..+..+.+
T Consensus 504 ~~~rk~s~p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s~p~k~fa~~~~ 582 (681)
T KOG3702|consen 504 RPLRKASQPTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKSLPNKKFASKCL 582 (681)
T ss_pred CcccccCCCceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhccccccccccce
Confidence 3444445557888888888888889999999999998888887766766678899999888886665554444444333
No 207
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.26 E-value=74 Score=19.52 Aligned_cols=18 Identities=6% Similarity=0.244 Sum_probs=14.9
Q ss_pred CCcHHHHHHHHhcCCCEe
Q 023475 42 ETQSETMRRYFEQFGEIL 59 (281)
Q Consensus 42 ~~te~~L~~~F~~~G~I~ 59 (281)
.+++++|++++..+|.+.
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 578999999999998543
No 208
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.40 E-value=2.8e+02 Score=18.59 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=27.7
Q ss_pred cHHHHHHHHhcCC-CEeEEEEeeCCCCCCcccEEEEEEc--CHHHHHHHHhCCC
Q 023475 44 QSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFR--EPEAARRACADPT 94 (281)
Q Consensus 44 te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~aFV~F~--~~~~A~~Ai~~~~ 94 (281)
.-.+|.++|.+++ .|.++...... .......+|.++ +.+++.++|++..
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~--~~~~~~v~i~v~~~~~~~~~~~L~~~G 65 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSK--EEDNKILVFRVQTMNPRPIIEDLRRAG 65 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccC--CCCeEEEEEEEecCCHHHHHHHHHHCC
Confidence 3456778888876 56666543321 222333455554 5666777776644
No 209
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=20.27 E-value=1.3e+02 Score=22.53 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=21.7
Q ss_pred CEeEEEEeeCCCCCCcccEEEEEEcCH
Q 023475 57 EILEAVVITDKNTGRSKGYGFVTFREP 83 (281)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~aFV~F~~~ 83 (281)
+|++|+|-+-...|+-|.|+-|+|++.
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~e 28 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDNE 28 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecce
Confidence 578888877666688899999999863
No 210
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=20.01 E-value=3.9e+02 Score=20.05 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=33.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhc-------C-CCEeEEEEeeC-----CCCCCccc-EEEEEEcCHHHHHHHHhC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQ-------F-GEILEAVVITD-----KNTGRSKG-YGFVTFREPEAARRACAD 92 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~-------~-G~I~~v~v~~d-----~~tg~skG-~aFV~F~~~~~A~~Ai~~ 92 (281)
-..+|| |..+++++++.++.++ . |+|.++...=. +-.+..+| |.++.|+-..++.+.++.
T Consensus 8 YE~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 8 YETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred eeEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 345666 5667777765555443 3 35555532110 01234566 578889866666666655
Done!