Query 023475
Match_columns 281
No_of_seqs 362 out of 1975
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 07:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqd_A RNA-binding region cont 99.9 1.3E-21 4.4E-26 153.2 15.7 88 24-111 10-97 (116)
2 2cpz_A CUG triplet repeat RNA- 99.9 9.8E-22 3.3E-26 153.6 11.6 90 24-113 18-108 (115)
3 4fxv_A ELAV-like protein 1; RN 99.9 6.9E-22 2.4E-26 151.3 9.7 80 30-109 18-98 (99)
4 2dgo_A Cytotoxic granule-assoc 99.9 6.1E-21 2.1E-25 149.0 14.7 88 27-114 11-99 (115)
5 2rs2_A Musashi-1, RNA-binding 99.9 1.5E-21 5.1E-26 151.7 10.4 90 24-113 18-107 (109)
6 2kxn_B Transformer-2 protein h 99.9 1.2E-21 4.2E-26 157.0 9.6 94 19-112 34-128 (129)
7 3s8s_A Histone-lysine N-methyl 99.9 6.3E-22 2.1E-26 154.4 7.6 84 29-112 4-88 (110)
8 2lxi_A RNA-binding protein 10; 99.8 1.1E-21 3.7E-26 147.8 6.8 82 31-112 1-85 (91)
9 2dgs_A DAZ-associated protein 99.8 1.5E-20 5.3E-25 142.8 13.0 86 28-113 7-92 (99)
10 3s7r_A Heterogeneous nuclear r 99.8 6.6E-21 2.3E-25 141.4 10.7 83 25-107 5-87 (87)
11 2do4_A Squamous cell carcinoma 99.8 1.2E-20 4.2E-25 143.6 12.1 85 26-111 12-97 (100)
12 2dnm_A SRP46 splicing factor; 99.8 9.3E-21 3.2E-25 145.1 10.7 88 26-113 8-96 (103)
13 2dh8_A DAZ-associated protein 99.8 5.8E-21 2E-25 146.7 9.6 86 27-112 12-97 (105)
14 1x5u_A Splicing factor 3B subu 99.8 1.9E-20 6.6E-25 143.7 12.5 86 27-112 11-97 (105)
15 1u6f_A Tcubp1, RNA-binding pro 99.8 2.5E-20 8.6E-25 150.2 13.5 88 26-113 37-125 (139)
16 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.3E-20 4.4E-25 155.1 11.6 86 27-112 35-121 (156)
17 2lkz_A RNA-binding protein 5; 99.8 2.1E-21 7.1E-26 147.7 6.3 82 27-108 5-93 (95)
18 2khc_A Testis-specific RNP-typ 99.8 1.3E-20 4.3E-25 147.8 10.9 86 23-108 32-118 (118)
19 1x4a_A Splicing factor, argini 99.8 2.8E-20 9.4E-25 144.0 12.7 85 25-112 16-101 (109)
20 1x4b_A Heterogeneous nuclear r 99.8 1.3E-20 4.4E-25 147.4 10.9 87 26-112 22-108 (116)
21 2cq0_A Eukaryotic translation 99.8 1.7E-20 5.7E-25 143.7 11.3 86 27-112 11-97 (103)
22 1whw_A Hypothetical protein ri 99.8 2.1E-20 7.2E-25 142.0 11.7 85 28-112 5-90 (99)
23 1x4h_A RNA-binding protein 28; 99.8 2.3E-20 7.9E-25 144.5 12.1 88 26-113 10-104 (111)
24 2cph_A RNA binding motif prote 99.8 2.2E-20 7.5E-25 143.7 11.6 87 26-112 10-99 (107)
25 2m2b_A RNA-binding protein 10; 99.8 5.7E-21 1.9E-25 153.0 8.6 87 25-112 17-110 (131)
26 2dnz_A Probable RNA-binding pr 99.8 2.8E-20 9.6E-25 140.1 11.8 84 29-112 3-87 (95)
27 2dng_A Eukaryotic translation 99.8 4.7E-20 1.6E-24 141.2 13.0 86 25-112 9-95 (103)
28 2cqg_A TDP-43, TAR DNA-binding 99.8 5.5E-20 1.9E-24 140.7 13.1 87 25-112 9-95 (103)
29 2fy1_A RNA-binding motif prote 99.8 4.5E-20 1.5E-24 145.0 12.3 85 27-112 3-88 (116)
30 1x5s_A Cold-inducible RNA-bind 99.8 2.2E-20 7.5E-25 142.6 10.2 85 28-112 9-94 (102)
31 2dgp_A Bruno-like 4, RNA bindi 99.8 2.4E-20 8.1E-25 143.4 10.4 87 26-112 8-98 (106)
32 2d9p_A Polyadenylate-binding p 99.8 3.8E-20 1.3E-24 141.6 11.5 87 26-114 10-97 (103)
33 1wi8_A EIF-4B, eukaryotic tran 99.8 5E-20 1.7E-24 141.3 12.1 84 27-112 11-96 (104)
34 1x5t_A Splicing factor 3B subu 99.8 2.4E-20 8.1E-25 140.8 10.1 84 30-113 4-89 (96)
35 4f25_A Polyadenylate-binding p 99.8 1.6E-20 5.6E-25 147.1 9.2 83 30-114 4-87 (115)
36 3md1_A Nuclear and cytoplasmic 99.8 3E-20 1E-24 136.3 9.9 80 31-110 1-81 (83)
37 2dnh_A Bruno-like 5, RNA bindi 99.8 7.1E-20 2.4E-24 140.5 12.4 85 28-113 12-100 (105)
38 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.5E-20 5E-25 143.6 8.5 85 29-113 10-95 (102)
39 1p27_B RNA-binding protein 8A; 99.8 3.2E-20 1.1E-24 142.7 10.4 85 27-111 19-104 (106)
40 2cqc_A Arginine/serine-rich sp 99.8 4.4E-20 1.5E-24 138.9 10.7 83 27-109 11-94 (95)
41 2e5h_A Zinc finger CCHC-type a 99.8 3.9E-20 1.3E-24 139.0 10.4 81 28-108 13-94 (94)
42 2cq4_A RNA binding motif prote 99.8 1.7E-20 5.9E-25 146.3 8.6 85 26-111 20-105 (114)
43 2do0_A HnRNP M, heterogeneous 99.8 1.6E-19 5.3E-24 140.6 13.7 86 27-113 11-97 (114)
44 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.9E-20 1E-24 137.6 9.0 81 29-109 4-85 (87)
45 3p5t_L Cleavage and polyadenyl 99.8 7.4E-21 2.5E-25 142.4 5.8 81 32-112 2-85 (90)
46 2dhg_A TRNA selenocysteine ass 99.8 6.5E-20 2.2E-24 140.4 11.2 85 28-113 6-93 (104)
47 2div_A TRNA selenocysteine ass 99.8 5.7E-20 1.9E-24 139.6 10.6 82 29-110 7-94 (99)
48 2lea_A Serine/arginine-rich sp 99.8 3.3E-20 1.1E-24 149.7 9.6 92 23-114 39-131 (135)
49 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.2E-19 4.3E-24 138.8 12.3 87 25-113 9-96 (103)
50 2cpf_A RNA binding motif prote 99.8 4.6E-20 1.6E-24 139.8 9.7 84 29-112 3-90 (98)
51 2cpe_A RNA-binding protein EWS 99.8 3.8E-20 1.3E-24 144.0 9.2 88 25-112 9-105 (113)
52 2ywk_A Putative RNA-binding pr 99.8 4.4E-20 1.5E-24 139.0 9.1 83 26-109 11-94 (95)
53 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.3E-20 1.5E-24 136.1 8.7 81 28-108 4-85 (85)
54 1wel_A RNA-binding protein 12; 99.8 3.9E-20 1.3E-24 146.7 9.0 85 25-110 19-104 (124)
55 2cpy_A RNA-binding protein 12; 99.8 1.6E-20 5.5E-25 146.9 6.6 84 27-111 11-95 (114)
56 3ex7_B RNA-binding protein 8A; 99.8 5.3E-20 1.8E-24 145.9 9.7 89 25-113 16-105 (126)
57 2dis_A Unnamed protein product 99.8 1.8E-19 6.1E-24 139.1 12.4 84 30-113 7-95 (109)
58 2cq3_A RNA-binding protein 9; 99.8 2E-19 6.7E-24 137.7 12.5 86 26-113 10-96 (103)
59 2jrs_A RNA-binding protein 39; 99.8 1.3E-19 4.5E-24 140.5 11.7 89 22-110 17-106 (108)
60 1oo0_B CG8781-PA, drosophila Y 99.8 5.1E-20 1.7E-24 142.6 9.3 87 26-112 21-108 (110)
61 2la6_A RNA-binding protein FUS 99.8 1.1E-19 3.6E-24 138.3 10.6 83 26-108 8-99 (99)
62 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.2E-20 1.1E-24 134.2 7.2 76 32-107 1-76 (77)
63 1p1t_A Cleavage stimulation fa 99.8 2.4E-20 8E-25 142.8 6.7 88 25-112 2-90 (104)
64 1wg5_A Heterogeneous nuclear r 99.8 3.1E-19 1.1E-23 137.3 12.8 82 28-110 12-94 (104)
65 2x1f_A MRNA 3'-END-processing 99.8 8.4E-20 2.9E-24 138.1 9.3 81 31-111 2-83 (96)
66 3n9u_C Cleavage and polyadenyl 99.8 8.4E-20 2.9E-24 151.0 10.0 81 29-109 53-136 (156)
67 3ucg_A Polyadenylate-binding p 99.8 1.8E-19 6.2E-24 133.9 10.8 80 30-110 5-85 (89)
68 2cqp_A RNA-binding protein 12; 99.8 8E-20 2.8E-24 138.5 8.3 82 28-109 12-94 (98)
69 1s79_A Lupus LA protein; RRM, 99.8 1.7E-19 5.9E-24 139.0 10.3 81 28-109 8-88 (103)
70 3ns6_A Eukaryotic translation 99.8 4.5E-20 1.5E-24 141.1 6.9 81 29-109 4-92 (100)
71 4a8x_A RNA-binding protein wit 99.8 7.5E-20 2.6E-24 135.6 7.9 83 30-112 3-87 (88)
72 1wez_A HnRNP H', FTP-3, hetero 99.8 1.9E-19 6.5E-24 138.3 10.2 81 28-110 12-92 (102)
73 1x5o_A RNA binding motif, sing 99.8 4.2E-19 1.4E-23 138.2 12.2 83 25-108 19-110 (114)
74 2mss_A Protein (musashi1); RNA 99.8 1.1E-19 3.6E-24 131.1 7.8 75 33-107 1-75 (75)
75 1sjq_A Polypyrimidine tract-bi 99.8 9.6E-20 3.3E-24 140.9 8.0 79 28-112 13-94 (105)
76 2ek1_A RNA-binding protein 12; 99.8 3.8E-20 1.3E-24 139.4 5.4 79 30-108 14-93 (95)
77 2dgv_A HnRNP M, heterogeneous 99.8 2.8E-19 9.5E-24 133.8 10.0 82 28-111 5-87 (92)
78 2kn4_A Immunoglobulin G-bindin 99.8 3.8E-19 1.3E-23 146.2 11.7 89 26-114 65-154 (158)
79 3ulh_A THO complex subunit 4; 99.8 2.3E-19 7.9E-24 138.1 9.7 83 25-108 23-106 (107)
80 1x4c_A Splicing factor, argini 99.8 8E-19 2.7E-23 135.8 12.6 79 28-113 12-96 (108)
81 2fc9_A NCL protein; structure 99.8 3.5E-19 1.2E-23 135.7 10.2 81 27-111 11-92 (101)
82 1iqt_A AUF1, heterogeneous nuc 99.8 8.3E-20 2.8E-24 131.5 6.3 75 33-107 1-75 (75)
83 2cpi_A CCR4-NOT transcription 99.8 1.3E-19 4.3E-24 141.1 7.6 84 28-111 12-102 (111)
84 3q2s_C Cleavage and polyadenyl 99.8 2.7E-19 9.1E-24 156.8 10.5 81 30-110 67-150 (229)
85 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5.5E-19 1.9E-23 142.0 11.5 82 26-107 58-140 (140)
86 2db1_A Heterogeneous nuclear r 99.8 2.3E-19 7.9E-24 141.3 8.9 82 28-110 14-98 (118)
87 2dgw_A Probable RNA-binding pr 99.8 8.2E-19 2.8E-23 131.2 11.3 80 28-110 7-87 (91)
88 2dgx_A KIAA0430 protein; RRM d 99.8 4.5E-19 1.5E-23 134.3 9.8 78 30-110 8-90 (96)
89 2jwn_A Embryonic polyadenylate 99.8 5.6E-19 1.9E-23 139.6 10.7 82 29-111 34-116 (124)
90 1x4e_A RNA binding motif, sing 99.8 7.4E-20 2.5E-24 135.1 5.0 80 29-108 3-83 (85)
91 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.9E-19 6.6E-24 137.4 7.4 83 26-110 14-98 (100)
92 2dgu_A Heterogeneous nuclear r 99.8 8.9E-19 3E-23 134.2 11.1 80 28-115 8-88 (103)
93 1fj7_A Nucleolin RBD1, protein 99.8 7.9E-20 2.7E-24 139.4 5.0 84 27-112 13-97 (101)
94 2hvz_A Splicing factor, argini 99.8 5.9E-19 2E-23 134.5 9.9 76 32-112 1-77 (101)
95 2err_A Ataxin-2-binding protei 99.8 2.6E-19 9E-24 138.9 8.0 86 23-110 21-107 (109)
96 2ki2_A SS-DNA binding protein 99.8 1E-19 3.5E-24 135.7 5.2 79 32-111 2-81 (90)
97 2cq1_A PTB-like protein L; RRM 99.8 7.8E-19 2.7E-23 134.9 10.2 79 28-112 12-93 (101)
98 2kt5_A RNA and export factor-b 99.8 9.2E-19 3.1E-23 138.5 10.7 85 27-112 31-116 (124)
99 2dnn_A RNA-binding protein 12; 99.8 4.9E-19 1.7E-23 137.9 8.9 79 29-109 14-92 (109)
100 1why_A Hypothetical protein ri 99.8 1.5E-18 5.2E-23 131.3 11.2 78 28-111 14-94 (97)
101 2e5j_A Methenyltetrahydrofolat 99.8 1E-18 3.4E-23 132.4 10.2 81 26-111 14-95 (97)
102 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.5E-19 2.2E-23 146.4 9.9 90 25-114 66-156 (165)
103 2ad9_A Polypyrimidine tract-bi 99.8 1E-18 3.5E-23 138.1 10.1 81 27-113 27-110 (119)
104 2xs2_A Deleted in azoospermia- 99.8 4.4E-19 1.5E-23 135.4 7.5 85 25-111 3-87 (102)
105 2hgm_A HNRPF protein, heteroge 99.8 7.2E-19 2.5E-23 140.4 8.9 80 28-109 39-120 (126)
106 2fc8_A NCL protein; structure 99.8 1.1E-18 3.9E-23 133.0 9.6 83 27-112 11-94 (102)
107 1wex_A Hypothetical protein (r 99.8 2.7E-18 9.4E-23 132.5 11.6 79 28-112 12-93 (104)
108 2cpx_A Hypothetical protein FL 99.8 7.1E-19 2.4E-23 137.0 8.0 89 25-113 19-108 (115)
109 2jvo_A Nucleolar protein 3; nu 99.8 7.7E-19 2.6E-23 136.3 8.1 87 18-112 18-105 (108)
110 1wf1_A RNA-binding protein RAL 99.8 1.9E-18 6.5E-23 133.9 10.1 76 28-111 24-101 (110)
111 2hgl_A HNRPF protein, heteroge 99.8 1E-18 3.4E-23 141.4 8.7 80 28-109 41-124 (136)
112 3r27_A HnRNP L, heterogeneous 99.8 1.3E-18 4.6E-23 133.2 8.8 82 23-110 13-97 (100)
113 2dnq_A RNA-binding protein 4B; 99.8 3.6E-18 1.2E-22 127.5 10.8 77 28-112 5-82 (90)
114 2nlw_A Eukaryotic translation 99.8 2.8E-18 9.6E-23 132.1 9.8 82 26-109 10-99 (105)
115 2ytc_A PRE-mRNA-splicing facto 99.8 4.2E-18 1.4E-22 125.5 10.3 78 25-108 6-85 (85)
116 2cpj_A Non-POU domain-containi 99.8 2.9E-18 9.9E-23 130.3 9.6 77 28-110 12-89 (99)
117 2dha_A FLJ20171 protein; RRM d 99.8 2.6E-19 8.9E-24 142.4 3.9 82 28-110 20-105 (123)
118 1x4d_A Matrin 3; structural ge 99.8 2E-18 6.8E-23 132.9 8.8 75 30-110 14-92 (102)
119 2lmi_A GRSF-1, G-rich sequence 99.8 1E-18 3.5E-23 135.0 7.1 83 27-110 7-92 (107)
120 2hgn_A Heterogeneous nuclear r 99.8 5E-19 1.7E-23 143.7 5.5 84 26-111 41-124 (139)
121 2lcw_A RNA-binding protein FUS 99.6 7.8E-20 2.7E-24 143.1 0.0 85 27-111 3-96 (116)
122 1x4g_A Nucleolysin TIAR; struc 99.7 4.9E-18 1.7E-22 131.3 9.8 80 27-112 21-101 (109)
123 1x4f_A Matrin 3; structural ge 99.7 3.2E-18 1.1E-22 133.9 8.6 78 28-111 22-103 (112)
124 2krb_A Eukaryotic translation 99.7 2.7E-18 9.3E-23 125.8 7.8 73 31-105 1-81 (81)
125 2a3j_A U1 small nuclear ribonu 99.7 6.3E-18 2.2E-22 135.1 10.4 81 28-111 26-111 (127)
126 1l3k_A Heterogeneous nuclear r 99.7 6.5E-18 2.2E-22 142.3 10.9 88 24-111 6-93 (196)
127 2dgt_A RNA-binding protein 30; 99.7 7.8E-18 2.7E-22 126.2 10.0 78 27-112 6-84 (92)
128 2dnp_A RNA-binding protein 14; 99.7 6.9E-18 2.4E-22 125.9 9.6 78 27-112 5-83 (90)
129 1l3k_A Heterogeneous nuclear r 99.7 9.8E-18 3.3E-22 141.1 11.0 87 28-114 101-187 (196)
130 4f02_A Polyadenylate-binding p 99.7 6.5E-18 2.2E-22 145.6 9.9 81 30-110 14-95 (213)
131 3d2w_A TAR DNA-binding protein 99.7 7E-18 2.4E-22 126.3 8.4 80 26-111 6-85 (89)
132 2la4_A Nuclear and cytoplasmic 99.7 3.7E-18 1.2E-22 130.1 7.0 76 28-109 24-100 (101)
133 2jvr_A Nucleolar protein 3; RN 99.7 3.7E-18 1.3E-22 133.3 7.1 78 28-109 25-104 (111)
134 2wbr_A GW182, gawky, LD47780P; 99.7 4.4E-18 1.5E-22 126.9 6.9 73 30-108 6-79 (89)
135 1x5p_A Negative elongation fac 99.7 4.5E-17 1.5E-21 123.3 12.3 77 28-112 12-89 (97)
136 2e5g_A U6 snRNA-specific termi 99.7 2.9E-17 9.8E-22 123.6 10.9 76 30-111 7-83 (94)
137 1fjc_A Nucleolin RBD2, protein 99.7 7.6E-18 2.6E-22 127.0 7.7 81 26-111 11-92 (96)
138 2cpd_A Apobec-1 stimulating pr 99.7 3.5E-17 1.2E-21 124.2 11.4 79 25-111 9-90 (99)
139 2f3j_A RNA and export factor b 99.7 1.1E-17 3.8E-22 141.0 9.5 81 28-109 85-166 (177)
140 3lqv_A PRE-mRNA branch site pr 99.7 9.4E-18 3.2E-22 130.8 8.2 80 29-111 6-86 (115)
141 3beg_B Splicing factor, argini 99.7 9.4E-18 3.2E-22 131.4 7.7 75 29-110 14-94 (115)
142 2kvi_A Nuclear polyadenylated 99.7 1.1E-17 3.6E-22 126.6 7.7 77 28-112 7-85 (96)
143 2cqh_A IGF-II mRNA-binding pro 99.7 8.8E-18 3E-22 126.0 7.0 77 29-112 6-85 (93)
144 2i2y_A Fusion protein consists 99.7 2.4E-17 8.1E-22 134.6 9.9 81 25-110 67-148 (150)
145 2dnl_A Cytoplasmic polyadenyla 99.7 1.5E-17 5.1E-22 129.9 8.3 78 30-109 7-87 (114)
146 1nu4_A U1A RNA binding domain; 99.7 8.1E-18 2.8E-22 127.0 6.5 82 28-112 5-91 (97)
147 2e44_A Insulin-like growth fac 99.7 2.6E-17 8.7E-22 124.1 9.2 78 29-110 13-92 (96)
148 1wf0_A TDP-43, TAR DNA-binding 99.7 1.3E-17 4.5E-22 123.9 7.4 77 30-112 4-80 (88)
149 2xnq_A Nuclear polyadenylated 99.7 3.6E-17 1.2E-21 124.2 9.8 75 27-109 18-94 (97)
150 2yh0_A Splicing factor U2AF 65 99.7 8.5E-17 2.9E-21 135.6 12.9 85 27-111 110-195 (198)
151 3pgw_S U1-70K; protein-RNA com 99.7 7.1E-17 2.4E-21 154.0 13.8 82 29-110 100-182 (437)
152 3md3_A Nuclear and cytoplasmic 99.7 5.7E-17 1.9E-21 132.4 10.8 82 27-108 83-165 (166)
153 1sjr_A Polypyrimidine tract-bi 99.7 5.5E-17 1.9E-21 134.8 10.8 81 27-111 42-125 (164)
154 2qfj_A FBP-interacting repress 99.7 6.1E-17 2.1E-21 138.3 11.1 83 29-111 123-206 (216)
155 2j8a_A Histone-lysine N-methyl 99.7 2.9E-17 1E-21 130.5 8.1 79 32-110 3-96 (136)
156 1fxl_A Paraneoplastic encephal 99.7 6.5E-17 2.2E-21 132.1 10.3 80 31-110 2-82 (167)
157 1b7f_A Protein (SXL-lethal pro 99.7 5.5E-17 1.9E-21 133.1 9.5 82 30-111 2-84 (168)
158 1whx_A Hypothetical protein ri 99.7 2.9E-17 1E-21 127.8 7.4 76 29-110 8-84 (111)
159 3egn_A RNA-binding protein 40; 99.7 6.9E-18 2.4E-22 136.7 3.6 87 28-114 42-134 (143)
160 2cjk_A Nuclear polyadenylated 99.7 4.2E-17 1.4E-21 133.8 8.0 81 30-110 86-166 (167)
161 2g4b_A Splicing factor U2AF 65 99.7 1.1E-16 3.6E-21 132.0 9.8 80 29-108 92-172 (172)
162 4f02_A Polyadenylate-binding p 99.7 1.9E-17 6.4E-22 142.7 5.3 81 30-112 102-183 (213)
163 1wg1_A KIAA1579 protein, homol 99.7 5.6E-17 1.9E-21 120.6 6.8 73 30-109 4-77 (88)
164 2voo_A Lupus LA protein; RNA-b 99.7 2.2E-16 7.4E-21 134.8 10.9 79 30-109 108-186 (193)
165 2cjk_A Nuclear polyadenylated 99.7 9.3E-17 3.2E-21 131.7 8.1 79 30-109 2-80 (167)
166 2e5i_A Heterogeneous nuclear r 99.7 7.9E-16 2.7E-20 122.4 13.0 78 28-111 22-103 (124)
167 2qfj_A FBP-interacting repress 99.7 1.5E-16 5E-21 135.9 9.2 83 28-110 25-108 (216)
168 1b7f_A Protein (SXL-lethal pro 99.7 5E-16 1.7E-20 127.3 10.8 80 28-107 86-168 (168)
169 2cq2_A Hypothetical protein LO 99.7 2.1E-16 7.1E-21 123.8 8.0 75 28-108 22-104 (114)
170 3md3_A Nuclear and cytoplasmic 99.6 3.1E-16 1E-20 128.0 8.7 79 32-111 1-80 (166)
171 2bz2_A Negative elongation fac 99.6 3.3E-16 1.1E-20 123.9 8.3 76 28-111 36-112 (121)
172 2hzc_A Splicing factor U2AF 65 99.6 4.1E-16 1.4E-20 115.1 8.1 71 29-106 4-86 (87)
173 1fxl_A Paraneoplastic encephal 99.6 7.8E-16 2.7E-20 125.7 10.0 80 28-107 85-167 (167)
174 3nmr_A Cugbp ELAV-like family 99.6 6.1E-16 2.1E-20 127.5 9.3 82 30-111 2-89 (175)
175 3pgw_A U1-A; protein-RNA compl 99.6 9.3E-16 3.2E-20 136.8 10.9 82 27-111 5-91 (282)
176 3zzy_A Polypyrimidine tract-bi 99.6 7.7E-16 2.6E-20 123.3 9.3 79 28-111 25-107 (130)
177 3tyt_A Heterogeneous nuclear r 99.6 7E-16 2.4E-20 132.7 9.3 76 30-110 3-80 (205)
178 3nmr_A Cugbp ELAV-like family 99.6 1.2E-15 4E-20 125.7 9.7 80 28-108 92-175 (175)
179 2diu_A KIAA0430 protein; struc 99.6 2E-15 6.9E-20 113.6 8.5 71 32-112 10-86 (96)
180 2pe8_A Splicing factor 45; RRM 99.6 2.6E-15 9E-20 115.9 9.3 80 30-109 7-93 (105)
181 3u1l_A PRE-mRNA-splicing facto 99.6 1.4E-15 4.8E-20 133.8 8.3 78 28-111 131-230 (240)
182 3pgw_A U1-A; protein-RNA compl 99.6 1.2E-14 4E-19 129.7 13.1 78 26-108 202-281 (282)
183 2dit_A HIV TAT specific factor 99.6 1.3E-14 4.3E-19 112.9 11.4 80 28-111 12-103 (112)
184 2adc_A Polypyrimidine tract-bi 99.6 5.8E-15 2E-19 128.4 9.8 78 28-110 31-110 (229)
185 1fje_B Nucleolin RBD12, protei 99.6 6.2E-16 2.1E-20 128.0 3.4 84 26-111 8-92 (175)
186 1fje_B Nucleolin RBD12, protei 99.6 4.5E-15 1.5E-19 122.8 8.4 79 27-110 95-174 (175)
187 2ghp_A U4/U6 snRNA-associated 99.6 4.8E-15 1.6E-19 132.8 8.7 82 28-110 207-291 (292)
188 3smz_A Protein raver-1, ribonu 99.6 1.1E-14 3.7E-19 130.0 10.6 82 30-111 94-176 (284)
189 3smz_A Protein raver-1, ribonu 99.6 5.4E-15 1.8E-19 132.0 7.8 85 28-113 181-267 (284)
190 1qm9_A Polypyrimidine tract-bi 99.5 8.4E-15 2.9E-19 123.8 7.8 76 31-111 3-80 (198)
191 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.2E-13 4E-18 105.7 13.2 76 31-112 10-92 (100)
192 2yh0_A Splicing factor U2AF 65 99.5 9.2E-14 3.1E-18 116.8 11.2 75 30-111 3-89 (198)
193 3sde_A Paraspeckle component 1 99.5 3E-14 1E-18 126.4 8.2 80 31-111 96-180 (261)
194 2ghp_A U4/U6 snRNA-associated 99.5 5.2E-14 1.8E-18 126.1 9.6 83 24-108 34-116 (292)
195 2g4b_A Splicing factor U2AF 65 99.5 7E-14 2.4E-18 114.9 9.5 75 30-110 3-88 (172)
196 3tyt_A Heterogeneous nuclear r 99.5 2.1E-14 7E-19 123.5 5.8 77 29-107 121-204 (205)
197 1jmt_A Splicing factor U2AF 35 99.5 1.1E-14 3.8E-19 112.1 3.4 71 36-107 20-103 (104)
198 3sde_A Paraspeckle component 1 99.5 7.5E-14 2.6E-18 123.7 9.2 76 28-109 19-95 (261)
199 3v4m_A Splicing factor U2AF 65 99.5 5.9E-14 2E-18 108.2 7.3 81 29-109 3-96 (105)
200 2adc_A Polypyrimidine tract-bi 99.5 1.4E-13 4.7E-18 119.7 9.9 76 29-109 149-227 (229)
201 1qm9_A Polypyrimidine tract-bi 99.5 7.6E-14 2.6E-18 117.9 8.0 76 29-109 118-196 (198)
202 3ue2_A Poly(U)-binding-splicin 99.4 1.4E-13 4.9E-18 108.3 7.3 79 30-108 19-107 (118)
203 3tht_A Alkylated DNA repair pr 99.4 1.2E-12 4.2E-17 120.8 8.9 75 28-108 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.2 1.3E-11 4.6E-16 96.4 7.0 76 30-109 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.2 3.9E-11 1.3E-15 94.5 9.2 80 23-108 10-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 2.7E-10 9.3E-15 84.8 7.8 70 32-110 8-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.9 4.1E-10 1.4E-14 84.3 3.4 69 31-108 15-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 2.5E-09 8.4E-14 92.2 7.1 67 42-108 140-211 (222)
209 2dhx_A Poly (ADP-ribose) polym 98.3 1.5E-05 5.3E-10 60.3 12.1 73 31-111 8-85 (104)
210 2l9w_A U4/U6 snRNA-associated- 98.2 2.9E-06 9.8E-11 65.0 7.3 74 28-107 18-97 (117)
211 1whv_A Poly(A)-specific ribonu 97.7 0.00012 4E-09 54.9 7.7 55 30-93 15-69 (100)
212 1wey_A Calcipressin 1; structu 97.6 0.00029 9.8E-09 53.4 8.5 73 30-108 4-82 (104)
213 1wwh_A Nucleoporin 35, nucleop 97.5 0.00063 2.2E-08 52.9 9.1 73 28-107 21-94 (119)
214 3ctr_A Poly(A)-specific ribonu 97.3 0.00036 1.2E-08 52.3 5.4 53 32-93 7-59 (101)
215 1uw4_A UPF3X; nonsense mediate 96.7 0.0052 1.8E-07 45.5 7.0 63 32-94 2-66 (91)
216 3pq1_A Poly(A) RNA polymerase; 96.3 0.0018 6.3E-08 61.6 3.1 58 30-93 52-109 (464)
217 3p3d_A Nucleoporin 53; structu 96.2 0.0076 2.6E-07 47.5 5.6 76 32-108 8-97 (132)
218 2kn4_A Immunoglobulin G-bindin 95.3 0.014 4.8E-07 46.6 4.1 33 60-94 2-34 (158)
219 2i2y_A Fusion protein consists 94.8 0.0069 2.3E-07 48.1 0.7 39 70-109 10-50 (150)
220 2l08_A Regulator of nonsense t 93.9 0.041 1.4E-06 41.0 3.3 64 31-94 9-74 (97)
221 3d45_A Poly(A)-specific ribonu 90.6 0.46 1.6E-05 45.6 6.9 55 30-93 439-493 (507)
222 2g0c_A ATP-dependent RNA helic 69.2 14 0.00046 25.2 6.1 67 33-108 2-75 (76)
223 2crl_A Copper chaperone for su 67.9 26 0.00091 24.9 7.8 56 32-94 21-77 (98)
224 4f25_A Polyadenylate-binding p 59.0 2 6.8E-05 32.0 0.0 20 28-47 94-113 (115)
225 4eyt_A Telomerase associated p 56.7 46 0.0016 24.1 7.0 68 30-105 11-86 (129)
226 3fry_A Probable copper-exporti 50.0 37 0.0013 22.2 5.5 57 31-94 6-62 (73)
227 2cu1_A Mitogen-activated prote 44.4 21 0.00072 26.4 3.5 63 38-108 23-86 (103)
228 3lpe_A Putative transcription 39.9 72 0.0025 22.7 5.9 32 58-94 40-71 (92)
229 2i9x_A Putative septation prot 38.5 38 0.0013 24.3 4.1 26 57-82 5-30 (87)
230 3bgu_A Ferredoxin-like protein 38.0 1.2E+02 0.0041 22.4 7.6 66 25-91 16-91 (116)
231 2lfv_A Protein DAMX; cell divi 43.5 7.1 0.00024 29.2 0.0 59 38-97 29-88 (106)
232 3ts2_A Protein LIN-28 homolog 35.0 6.7 0.00023 31.1 -0.5 28 46-81 2-29 (148)
233 3bb5_A Stress responsive alpha 34.0 1.4E+02 0.0049 22.1 8.1 62 30-91 20-92 (121)
234 2ia9_A Putative septation prot 34.0 48 0.0016 24.4 4.1 26 57-82 5-30 (100)
235 4e8u_A Putative uncharacterize 33.7 63 0.0022 26.2 5.1 56 33-91 14-81 (172)
236 3swz_A Steroid 17-alpha-hydrox 32.6 43 0.0015 30.5 4.6 59 33-100 16-78 (494)
237 2i9z_A Putative septation prot 32.6 52 0.0018 24.4 4.1 26 57-82 5-30 (105)
238 3fut_A Dimethyladenosine trans 32.3 70 0.0024 27.5 5.6 33 32-65 111-143 (271)
239 3uzu_A Ribosomal RNA small sub 31.0 36 0.0012 29.4 3.6 34 32-65 115-148 (279)
240 2e5p_A Protein PHF1, PHD finge 30.4 25 0.00085 23.9 1.8 12 72-83 36-47 (68)
241 2jrh_A Mitogen-activated prote 29.7 1E+02 0.0034 22.2 5.0 63 38-108 19-82 (94)
242 1q8l_A Copper-transporting ATP 29.0 1.2E+02 0.0042 19.8 7.3 59 30-94 9-71 (84)
243 3mfb_A Uncharacterized protein 27.8 80 0.0027 25.2 4.7 37 43-79 3-42 (157)
244 1i4w_A Mitochondrial replicati 27.2 73 0.0025 28.7 5.0 22 33-54 144-165 (353)
245 2c60_A Human mitogen-activated 26.9 86 0.0029 23.2 4.3 61 38-106 46-107 (111)
246 2m0o_A PHD finger protein 1; t 26.4 32 0.0011 24.1 1.8 12 72-83 53-64 (79)
247 1q4r_A Protein AT3G17210; cent 26.0 1.5E+02 0.0053 21.4 5.9 60 32-91 12-82 (112)
248 1kvi_A Copper-transporting ATP 25.9 1.3E+02 0.0045 19.1 7.1 61 27-93 5-69 (79)
249 2npt_B Mitogen-activated prote 25.7 1E+02 0.0034 22.5 4.5 61 38-106 35-96 (100)
250 2eqj_A Metal-response element- 25.0 35 0.0012 23.2 1.8 12 72-83 40-51 (66)
251 2e5q_A PHD finger protein 19; 24.6 24 0.00083 23.6 0.9 13 71-83 33-45 (63)
252 2cug_A Mkiaa0962 protein; DNAJ 23.7 41 0.0014 23.5 2.1 20 36-55 22-41 (88)
253 4bby_A Alkyldihydroxyacetoneph 23.6 61 0.0021 31.7 4.0 54 38-92 350-407 (658)
254 2qyc_A Ferredoxin-like protein 23.5 2E+02 0.0068 20.3 7.3 55 36-91 10-74 (103)
255 1wvf_A 4-cresol dehydrogenase 23.1 48 0.0016 31.3 3.1 43 47-90 217-261 (520)
256 2g9o_A Copper-transporting ATP 22.7 1.8E+02 0.0062 19.5 5.8 56 32-93 5-64 (90)
257 3tqs_A Ribosomal RNA small sub 22.3 61 0.0021 27.5 3.4 32 34-65 99-130 (255)
258 4a4j_A Pacszia, cation-transpo 21.2 1.6E+02 0.0054 18.3 5.3 56 32-93 4-62 (69)
259 1igq_A Transcriptional repress 20.2 96 0.0033 20.7 3.2 22 60-82 21-42 (62)
No 1
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.3e-21 Score=153.18 Aligned_cols=88 Identities=60% Similarity=1.043 Sum_probs=81.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeE
Q 023475 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (281)
.+..+...++|||+||++++++++|+++|++||.|++|+|++++.++++||||||+|++.++|++||+.++.+|+|++|+
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~ 89 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 89 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECE
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred EEeccCCC
Q 023475 104 CNLASLGR 111 (281)
Q Consensus 104 V~~a~~~~ 111 (281)
|+++..+.
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997543
No 2
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=9.8e-22 Score=153.64 Aligned_cols=90 Identities=26% Similarity=0.335 Sum_probs=81.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCcee
Q 023475 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (281)
....+...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.++ ..|+|++|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455567899999999999999999999999999999999999899999999999999999999998876 66999999
Q ss_pred EEEeccCCCCC
Q 023475 103 NCNLASLGRPR 113 (281)
Q Consensus 103 ~V~~a~~~~~~ 113 (281)
+|++++.+..+
T Consensus 98 ~V~~a~~~~~~ 108 (115)
T 2cpz_A 98 KVQLKRSKNDS 108 (115)
T ss_dssp EEECCCCSCCC
T ss_pred EEEEcCCCCcC
Confidence 99999765443
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=6.9e-22 Score=151.26 Aligned_cols=80 Identities=28% Similarity=0.408 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
+.++|||+|||.++||++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.++ ..|+|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45789999999999999999999999999999999999999999999999999999999999876 66999999999985
Q ss_pred C
Q 023475 109 L 109 (281)
Q Consensus 109 ~ 109 (281)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 3
No 4
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=6.1e-21 Score=148.96 Aligned_cols=88 Identities=36% Similarity=0.574 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
+....++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567999999999999999999999999999999999999899999999999999999999999876 66999999999
Q ss_pred eccCCCCCC
Q 023475 106 LASLGRPRP 114 (281)
Q Consensus 106 ~a~~~~~~~ 114 (281)
+++.+..+.
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998665543
No 5
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.86 E-value=1.5e-21 Score=151.74 Aligned_cols=90 Identities=34% Similarity=0.629 Sum_probs=77.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeE
Q 023475 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (281)
..+.+...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.++..|+|+.|+
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~ 97 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTID 97 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999988779999999
Q ss_pred EEeccCCCCC
Q 023475 104 CNLASLGRPR 113 (281)
Q Consensus 104 V~~a~~~~~~ 113 (281)
|+++..++.+
T Consensus 98 V~~a~~~~~~ 107 (109)
T 2rs2_A 98 PKVAFPRRAQ 107 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999765544
No 6
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=1.2e-21 Score=156.96 Aligned_cols=94 Identities=24% Similarity=0.411 Sum_probs=83.3
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCc
Q 023475 19 FQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (281)
Q Consensus 19 ~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i 97 (281)
.............++|||+||++++++++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.++ ..|
T Consensus 34 ~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i 113 (129)
T 2kxn_B 34 SRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 113 (129)
T ss_dssp -CCCCCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3334445556678999999999999999999999999999999999999999999999999999999999999866 669
Q ss_pred CCceeEEEeccCCCC
Q 023475 98 DGRRANCNLASLGRP 112 (281)
Q Consensus 98 ~G~~i~V~~a~~~~~ 112 (281)
+|++|+|++++.+++
T Consensus 114 ~g~~l~V~~a~~~~p 128 (129)
T 2kxn_B 114 DGRRIRVDFSITKRP 128 (129)
T ss_dssp SSSCCEESCCSSSSC
T ss_pred CCEEEEEEEecCCCC
Confidence 999999999976554
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=6.3e-22 Score=154.45 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|++||+.+| ..|+|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999999999999999999999999999977 6699999999999
Q ss_pred cCCCC
Q 023475 108 SLGRP 112 (281)
Q Consensus 108 ~~~~~ 112 (281)
..++.
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 65543
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=147.79 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=75.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-C-CcCCceeEEEec
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P-FIDGRRANCNLA 107 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~-~i~G~~i~V~~a 107 (281)
+++|||+|||.++||++|+++|++|| +|++|+|++|+.|+++||||||+|.+.++|++||+.++ . .|+|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999864 3 599999999999
Q ss_pred cCCCC
Q 023475 108 SLGRP 112 (281)
Q Consensus 108 ~~~~~ 112 (281)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 75443
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=142.82 Aligned_cols=86 Identities=28% Similarity=0.556 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEec
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (281)
+...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|++.++|++||+..+..|+|+.|+|+++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44678999999999999999999999999999999999999999999999999999999999993336799999999999
Q ss_pred cCCCCC
Q 023475 108 SLGRPR 113 (281)
Q Consensus 108 ~~~~~~ 113 (281)
..+..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 765443
No 10
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=6.6e-21 Score=141.38 Aligned_cols=83 Identities=33% Similarity=0.721 Sum_probs=76.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V 104 (281)
+..+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.|+|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999998778899999999
Q ss_pred Eec
Q 023475 105 NLA 107 (281)
Q Consensus 105 ~~a 107 (281)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 11
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=143.64 Aligned_cols=85 Identities=18% Similarity=0.362 Sum_probs=77.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
......++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999998 79999999999999999999999876 5699999999
Q ss_pred EeccCCC
Q 023475 105 NLASLGR 111 (281)
Q Consensus 105 ~~a~~~~ 111 (281)
++++.+.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9996544
No 12
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=9.3e-21 Score=145.09 Aligned_cols=88 Identities=25% Similarity=0.447 Sum_probs=80.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
......++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345567999999999999999999999999999999999999999999999999999999999999866 6799999999
Q ss_pred EeccCCCCC
Q 023475 105 NLASLGRPR 113 (281)
Q Consensus 105 ~~a~~~~~~ 113 (281)
++++.++.+
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999765443
No 13
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=5.8e-21 Score=146.74 Aligned_cols=86 Identities=37% Similarity=0.747 Sum_probs=78.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEe
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (281)
.+...++|||+||++++++++|+++|++||+|++|+|++++.++++||||||+|++.++|++||+.....|+|+.|+|++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 45677999999999999999999999999999999999999999999999999999999999999943669999999999
Q ss_pred ccCCCC
Q 023475 107 ASLGRP 112 (281)
Q Consensus 107 a~~~~~ 112 (281)
+..+..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 975543
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=143.68 Aligned_cols=86 Identities=28% Similarity=0.366 Sum_probs=79.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.....++|||+||++++++++|+++|++||.|++|+|++++.++++||||||+|++.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999876 66999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+++.++.
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9975543
No 15
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-20 Score=150.23 Aligned_cols=88 Identities=27% Similarity=0.440 Sum_probs=80.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
.++...++|||+||++++++++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.++ ..|+|++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 445667999999999999999999999999999999999999999999999999999999999999877 5699999999
Q ss_pred EeccCCCCC
Q 023475 105 NLASLGRPR 113 (281)
Q Consensus 105 ~~a~~~~~~ 113 (281)
++++.+..+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999765444
No 16
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=1.3e-20 Score=155.06 Aligned_cols=86 Identities=20% Similarity=0.240 Sum_probs=79.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.....++|||+||++++++++|+++|++||+|++|+|++++.+++++|||||+|++.++|++||+.++ ..|+|++|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999876 66999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+++..+.
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9976544
No 17
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=147.71 Aligned_cols=82 Identities=17% Similarity=0.296 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCC--EeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCC-----CcCC
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGE--ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-----FIDG 99 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~--I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~-----~i~G 99 (281)
......+|||+||++++|+++|+++|++||. |++|+|++|+.|+++||||||+|.+.++|++||+.++. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3556789999999999999999999999995 67999999999999999999999999999999998653 3899
Q ss_pred ceeEEEecc
Q 023475 100 RRANCNLAS 108 (281)
Q Consensus 100 ~~i~V~~a~ 108 (281)
|+|+|++|+
T Consensus 85 r~i~V~~Ak 93 (95)
T 2lkz_A 85 KTIGVDFAK 93 (95)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEcc
Confidence 999999995
No 18
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=1.3e-20 Score=147.82 Aligned_cols=86 Identities=26% Similarity=0.385 Sum_probs=78.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCce
Q 023475 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (281)
Q Consensus 23 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~ 101 (281)
....++...++|||+||++++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.++ ..|+|++
T Consensus 32 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 32 GKQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp SSSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344556678999999999999999999999999999999999999999999999999999999999999876 5699999
Q ss_pred eEEEecc
Q 023475 102 ANCNLAS 108 (281)
Q Consensus 102 i~V~~a~ 108 (281)
|+|++++
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999973
No 19
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-20 Score=143.98 Aligned_cols=85 Identities=20% Similarity=0.342 Sum_probs=75.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
...+...++|||+||++++++++|+++|++||.|++|+|..+ +++||||||+|++.++|++||+.++ ..|+|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344557799999999999999999999999999999999665 5689999999999999999998876 669999999
Q ss_pred EEeccCCCC
Q 023475 104 CNLASLGRP 112 (281)
Q Consensus 104 V~~a~~~~~ 112 (281)
|++++.++.
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 999975543
No 20
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=147.43 Aligned_cols=87 Identities=36% Similarity=0.626 Sum_probs=79.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (281)
..+...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.+...|+|+.|+|+
T Consensus 22 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 22 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPK 101 (116)
T ss_dssp CHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEE
Confidence 33445699999999999999999999999999999999999999999999999999999999999994467999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
++..+..
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9976544
No 21
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=143.67 Aligned_cols=86 Identities=28% Similarity=0.371 Sum_probs=79.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
+....++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567999999999999999999999999999999999999899999999999999999999999876 66999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+++.+..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9975543
No 22
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=141.95 Aligned_cols=85 Identities=26% Similarity=0.452 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999999999899999999999999999999998877 569999999999
Q ss_pred ccCCCC
Q 023475 107 ASLGRP 112 (281)
Q Consensus 107 a~~~~~ 112 (281)
++.++.
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 976544
No 23
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=144.51 Aligned_cols=88 Identities=27% Similarity=0.426 Sum_probs=79.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-------CCcC
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-------PFID 98 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-------~~i~ 98 (281)
......++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345567899999999999999999999999999999999999999999999999999999999999865 4599
Q ss_pred CceeEEEeccCCCCC
Q 023475 99 GRRANCNLASLGRPR 113 (281)
Q Consensus 99 G~~i~V~~a~~~~~~ 113 (281)
|+.|+|+++..+..+
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999765443
No 24
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=143.72 Aligned_cols=87 Identities=24% Similarity=0.425 Sum_probs=79.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeC-CCCCCcccEEEEEEcCHHHHHHHHhCC-C-CCcCCcee
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITD-KNTGRSKGYGFVTFREPEAARRACADP-T-PFIDGRRA 102 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d-~~tg~skG~aFV~F~~~~~A~~Ai~~~-~-~~i~G~~i 102 (281)
..+...++|||+||++++++++|+++|++||.|++|+|+++ +.+++++|||||+|.+.++|++||+.+ + ..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567799999999999999999999999999999999999 788999999999999999999999997 5 66999999
Q ss_pred EEEeccCCCC
Q 023475 103 NCNLASLGRP 112 (281)
Q Consensus 103 ~V~~a~~~~~ 112 (281)
+|++++.+..
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999976544
No 25
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=5.7e-21 Score=153.03 Aligned_cols=87 Identities=17% Similarity=0.278 Sum_probs=79.1
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeE--EEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-C----Cc
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P----FI 97 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~----~i 97 (281)
+..+...++|||+||+++++|++|+++|++||.|+. |+|++|+.|+++||||||+|++. +|++||+.++ . .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 445567789999999999999999999999999976 99999999999999999999999 9999999976 5 79
Q ss_pred CCceeEEEeccCCCC
Q 023475 98 DGRRANCNLASLGRP 112 (281)
Q Consensus 98 ~G~~i~V~~a~~~~~ 112 (281)
+|++|+|++++.++.
T Consensus 96 ~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 96 DGKTINVEFAKGSKR 110 (131)
T ss_dssp GGCCCCCEECCCSCC
T ss_pred CCEEEEEEECCCCCC
Confidence 999999999976544
No 26
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=140.10 Aligned_cols=84 Identities=35% Similarity=0.589 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|++.++|++||+.++ ..|+|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 356899999999999999999999999999999999999999999999999999999999999866 6799999999999
Q ss_pred cCCCC
Q 023475 108 SLGRP 112 (281)
Q Consensus 108 ~~~~~ 112 (281)
+.+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 65443
No 27
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=4.7e-20 Score=141.24 Aligned_cols=86 Identities=20% Similarity=0.375 Sum_probs=77.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
+..+...++|||+||++++++++|+++|++|| |++|+|++|+.+++++|||||+|++.++|++|| .++ ..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 33455679999999999999999999999996 999999999999999999999999999999999 655 669999999
Q ss_pred EEeccCCCC
Q 023475 104 CNLASLGRP 112 (281)
Q Consensus 104 V~~a~~~~~ 112 (281)
|+++..+..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999975543
No 28
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.5e-20 Score=140.74 Aligned_cols=87 Identities=34% Similarity=0.642 Sum_probs=78.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V 104 (281)
...+...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|++.++|++||+. .+.|+|++|+|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v 87 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDC 87 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999996 45799999999
Q ss_pred EeccCCCC
Q 023475 105 NLASLGRP 112 (281)
Q Consensus 105 ~~a~~~~~ 112 (281)
+++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99976543
No 29
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=144.98 Aligned_cols=85 Identities=29% Similarity=0.529 Sum_probs=77.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
+....++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|++.++|++||+.++ ..|+|+.|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999876 66999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+++.+..
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9975543
No 30
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=142.62 Aligned_cols=85 Identities=34% Similarity=0.647 Sum_probs=78.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|++.++|++||+.++ ..|+|++|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3356899999999999999999999999999999999999999999999999999999999998866 669999999999
Q ss_pred ccCCCC
Q 023475 107 ASLGRP 112 (281)
Q Consensus 107 a~~~~~ 112 (281)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 976543
No 31
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=2.4e-20 Score=143.41 Aligned_cols=87 Identities=28% Similarity=0.419 Sum_probs=78.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCc---CCce
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI---DGRR 101 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i---~G~~ 101 (281)
..+...++|||+||+.++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.++ ..+ .+++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 345567899999999999999999999999999999999999999999999999999999999999876 455 8899
Q ss_pred eEEEeccCCCC
Q 023475 102 ANCNLASLGRP 112 (281)
Q Consensus 102 i~V~~a~~~~~ 112 (281)
|+|+++..++.
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999975543
No 32
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=141.63 Aligned_cols=87 Identities=30% Similarity=0.492 Sum_probs=78.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
..+...++|||+||++++++++|+++|++||.|++|+|+++ +++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34557889999999999999999999999999999999998 79999999999999999999999866 6699999999
Q ss_pred EeccCCCCCC
Q 023475 105 NLASLGRPRP 114 (281)
Q Consensus 105 ~~a~~~~~~~ 114 (281)
++++.++.+.
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2d9p_A 88 ALAQRKEERQ 97 (103)
T ss_dssp EECSSCCCCC
T ss_pred EEecccccCC
Confidence 9997665443
No 33
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5e-20 Score=141.34 Aligned_cols=84 Identities=17% Similarity=0.396 Sum_probs=76.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCC-CCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNT-GRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~t-g~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
.+...++|||+||++++++++|+++|++|| |++|+|++++.+ ++++|||||+|.+.++|++|| .++ ..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345679999999999999999999999999 999999999988 999999999999999999999 655 6699999999
Q ss_pred EeccCCCC
Q 023475 105 NLASLGRP 112 (281)
Q Consensus 105 ~~a~~~~~ 112 (281)
++++.++.
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99976544
No 34
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-20 Score=140.76 Aligned_cols=84 Identities=26% Similarity=0.454 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEE-EEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
..++|||+||+.++++++|+++|++||.|++| +|++|+.+++++|||||+|++.++|++||+.++ ..|+|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56899999999999999999999999999999 999998899999999999999999999999877 5699999999999
Q ss_pred cCCCCC
Q 023475 108 SLGRPR 113 (281)
Q Consensus 108 ~~~~~~ 113 (281)
..+..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 765443
No 35
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=1.6e-20 Score=147.14 Aligned_cols=83 Identities=29% Similarity=0.469 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
..++|||+||+++++|++|+++|++||.|++|+|++|+ +.+||||||+|++.++|++||+.++ ..|+|++|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999996 4589999999999999999999866 66999999999997
Q ss_pred CCCCCC
Q 023475 109 LGRPRP 114 (281)
Q Consensus 109 ~~~~~~ 114 (281)
.++.+.
T Consensus 82 ~~~~~~ 87 (115)
T 4f25_A 82 SRKERE 87 (115)
T ss_dssp CCCC--
T ss_pred Cccccc
Confidence 655443
No 36
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=3e-20 Score=136.31 Aligned_cols=80 Identities=34% Similarity=0.509 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (281)
+++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|++++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999999999999999999999999999866 669999999999965
Q ss_pred C
Q 023475 110 G 110 (281)
Q Consensus 110 ~ 110 (281)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=7.1e-20 Score=140.49 Aligned_cols=85 Identities=27% Similarity=0.335 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCC---ceeE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG---RRAN 103 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G---~~i~ 103 (281)
+...++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.++ ..|.+ +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999998 69999999999999999999999876 55787 9999
Q ss_pred EEeccCCCCC
Q 023475 104 CNLASLGRPR 113 (281)
Q Consensus 104 V~~a~~~~~~ 113 (281)
|++++.++.+
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999765544
No 38
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-20 Score=143.60 Aligned_cols=85 Identities=32% Similarity=0.450 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 456899999999999999999999999999999999999999999999999999999999999866 5699999999999
Q ss_pred cCCCCC
Q 023475 108 SLGRPR 113 (281)
Q Consensus 108 ~~~~~~ 113 (281)
+.++.+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 765543
No 39
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-20 Score=142.67 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=78.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.....++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999866 67999999999
Q ss_pred eccCCC
Q 023475 106 LASLGR 111 (281)
Q Consensus 106 ~a~~~~ 111 (281)
++..+.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997554
No 40
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.4e-20 Score=138.85 Aligned_cols=83 Identities=27% Similarity=0.414 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|++.++|++||+.++ ..|+|++|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999876 56999999999
Q ss_pred eccC
Q 023475 106 LASL 109 (281)
Q Consensus 106 ~a~~ 109 (281)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9853
No 41
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=139.04 Aligned_cols=81 Identities=22% Similarity=0.479 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|++.++|++||+.++ ..|+|++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4457899999999999999999999999999999999999999999999999999999999999876 569999999999
Q ss_pred cc
Q 023475 107 AS 108 (281)
Q Consensus 107 a~ 108 (281)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 42
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=146.27 Aligned_cols=85 Identities=22% Similarity=0.317 Sum_probs=77.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
..+...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++|| .++ ..|+|+.|+|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999 655 6699999999
Q ss_pred EeccCCC
Q 023475 105 NLASLGR 111 (281)
Q Consensus 105 ~~a~~~~ 111 (281)
++++.++
T Consensus 99 ~~a~~~~ 105 (114)
T 2cq4_A 99 QASQAEK 105 (114)
T ss_dssp EEHHHHH
T ss_pred EecCCCc
Confidence 9996543
No 43
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=140.58 Aligned_cols=86 Identities=23% Similarity=0.385 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.....++|||+||++++++++|+++|++||.|++|+|++++ +++++|||||+|++.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34457899999999999999999999999999999999998 49999999999999999999999866 66999999999
Q ss_pred eccCCCCC
Q 023475 106 LASLGRPR 113 (281)
Q Consensus 106 ~a~~~~~~ 113 (281)
+++....+
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99755443
No 44
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=137.62 Aligned_cols=81 Identities=36% Similarity=0.539 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356899999999999999999999999999999999999899999999999999999999999866 6699999999999
Q ss_pred cC
Q 023475 108 SL 109 (281)
Q Consensus 108 ~~ 109 (281)
+.
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 45
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=7.4e-21 Score=142.44 Aligned_cols=81 Identities=19% Similarity=0.375 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCC--CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
.+|||+||++++++++|+++|++|| .|++|+|++|+.++++||||||+|.+.++|++||+.++ ..|+|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999877 67999999999997
Q ss_pred CCCC
Q 023475 109 LGRP 112 (281)
Q Consensus 109 ~~~~ 112 (281)
....
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 5443
No 46
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=140.44 Aligned_cols=85 Identities=25% Similarity=0.418 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhc-CCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CC-cCCceeEE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQ-FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF-IDGRRANC 104 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~-i~G~~i~V 104 (281)
....++|||+||++++++++|+++|++ ||.|++|+|++|+ ++++||||||+|.+.++|++||+.++ .. |+|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 446789999999999999999999999 9999999999999 89999999999999999999999876 67 99999999
Q ss_pred EeccCCCCC
Q 023475 105 NLASLGRPR 113 (281)
Q Consensus 105 ~~a~~~~~~ 113 (281)
+++..+..+
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999755443
No 47
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=139.56 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEe-EEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCce----e
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEIL-EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR----A 102 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~-~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~----i 102 (281)
...++|||+||++++++++|+++|++||.|+ +|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3578999999999999999999999999999 99999999999999999999999999999999977 5699999 9
Q ss_pred EEEeccCC
Q 023475 103 NCNLASLG 110 (281)
Q Consensus 103 ~V~~a~~~ 110 (281)
+|++|+..
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99998644
No 48
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=3.3e-20 Score=149.68 Aligned_cols=92 Identities=29% Similarity=0.531 Sum_probs=82.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCce
Q 023475 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (281)
Q Consensus 23 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~ 101 (281)
..+..+...++|||+||++++++++|+++|++||.|++|+|++++.++++||||||+|.+.++|++||+.++ ..|+|++
T Consensus 39 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 345556678899999999999999999999999999999999999899999999999999999999999977 6699999
Q ss_pred eEEEeccCCCCCC
Q 023475 102 ANCNLASLGRPRP 114 (281)
Q Consensus 102 i~V~~a~~~~~~~ 114 (281)
|+|++++.++++.
T Consensus 119 l~V~~a~~~~~~~ 131 (135)
T 2lea_A 119 LRVQMARYGRPPD 131 (135)
T ss_dssp CEEEECCCCCCCT
T ss_pred EEEEECCCCCCCc
Confidence 9999997655443
No 49
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=138.75 Aligned_cols=87 Identities=24% Similarity=0.305 Sum_probs=76.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
...+...++|||+||++++++++|+++|++||.|++|+|++|+. .+||||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 34456779999999999999999999999999999999999964 379999999999999999999876 569999999
Q ss_pred EEeccCCCCC
Q 023475 104 CNLASLGRPR 113 (281)
Q Consensus 104 V~~a~~~~~~ 113 (281)
|++++.+..+
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2cqi_A 87 VNWATTPSSQ 96 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEECCCCccc
Confidence 9999765443
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=139.80 Aligned_cols=84 Identities=25% Similarity=0.482 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCC---CCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN---TGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~---tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
...++|||+||++++++++|+++|++||.|++|+|++++. |++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999999876 66999999999999999999999876 6699999999
Q ss_pred EeccCCCC
Q 023475 105 NLASLGRP 112 (281)
Q Consensus 105 ~~a~~~~~ 112 (281)
++++.+..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99975543
No 51
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.8e-20 Score=143.97 Aligned_cols=88 Identities=25% Similarity=0.399 Sum_probs=79.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEe--------EEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-C
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEIL--------EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P 95 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--------~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~ 95 (281)
+.++...++|||+||++++++++|+++|++||.|+ +|+|++|+.++++||||||+|.+.++|++||+.++ .
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34556789999999999999999999999999999 69999999999999999999999999999999866 6
Q ss_pred CcCCceeEEEeccCCCC
Q 023475 96 FIDGRRANCNLASLGRP 112 (281)
Q Consensus 96 ~i~G~~i~V~~a~~~~~ 112 (281)
.|+|+.|+|++++.+..
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 69999999999976544
No 52
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=4.4e-20 Score=139.01 Aligned_cols=83 Identities=29% Similarity=0.428 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
..+...++|||+||++++++++|+++|++||.|++|+|++|+. +++||||||+|++.++|++||+.++ ..|+|++|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 3455679999999999999999999999999999999999986 9999999999999999999999866 6699999999
Q ss_pred EeccC
Q 023475 105 NLASL 109 (281)
Q Consensus 105 ~~a~~ 109 (281)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99853
No 53
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=4.3e-20 Score=136.12 Aligned_cols=81 Identities=32% Similarity=0.475 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
+...++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|++.++|++||+.++ ..|+|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999998899999999999999999999998866 669999999999
Q ss_pred cc
Q 023475 107 AS 108 (281)
Q Consensus 107 a~ 108 (281)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 83
No 54
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.9e-20 Score=146.70 Aligned_cols=85 Identities=18% Similarity=0.340 Sum_probs=76.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
.......++|||+||++++++++|+++|++||.|+++.++.++.+++++|||||+|++.++|++||+ ++ ..|+|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 97 (124)
T 1wel_A 19 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQ 97 (124)
T ss_dssp SSCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 3445567899999999999999999999999999997777777789999999999999999999999 65 669999999
Q ss_pred EEeccCC
Q 023475 104 CNLASLG 110 (281)
Q Consensus 104 V~~a~~~ 110 (281)
|.++..+
T Consensus 98 V~~a~~~ 104 (124)
T 1wel_A 98 VHPITKK 104 (124)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9999653
No 55
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-20 Score=146.85 Aligned_cols=84 Identities=15% Similarity=0.263 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCE-eEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEI-LEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I-~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (281)
.+...++|||+||++++++++|+++|++||.| ++|+|++|+ ++++||||||+|++.++|++||+.....|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 34567899999999999999999999999999 899999999 8999999999999999999999994467999999999
Q ss_pred eccCCC
Q 023475 106 LASLGR 111 (281)
Q Consensus 106 ~a~~~~ 111 (281)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997543
No 56
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=5.3e-20 Score=145.86 Aligned_cols=89 Identities=24% Similarity=0.335 Sum_probs=80.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
+......++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3445567899999999999999999999999999999999999899999999999999999999999866 679999999
Q ss_pred EEeccCCCCC
Q 023475 104 CNLASLGRPR 113 (281)
Q Consensus 104 V~~a~~~~~~ 113 (281)
|+++..+..+
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999765544
No 57
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=139.15 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=77.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCC-EeEEEEe-eCCCCCCcccEEEEEEcCHHHHHHHHhCCC---CCcCCceeEE
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGE-ILEAVVI-TDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRANC 104 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~v~-~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i~V 104 (281)
..++|||+||++++++++|+++|++||. |++|+|+ +++.++++||||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4689999999999999999999999998 9999998 888889999999999999999999999974 4699999999
Q ss_pred EeccCCCCC
Q 023475 105 NLASLGRPR 113 (281)
Q Consensus 105 ~~a~~~~~~ 113 (281)
++++.+...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999765543
No 58
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=137.66 Aligned_cols=86 Identities=29% Similarity=0.504 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
..+...++|||+||++++++++|+++|++||.|++|+|++++. .++|||||+|++.++|++||+.++ ..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456679999999999999999999999999999999999864 389999999999999999999866 6699999999
Q ss_pred EeccCCCCC
Q 023475 105 NLASLGRPR 113 (281)
Q Consensus 105 ~~a~~~~~~ 113 (281)
+++..+..+
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999765443
No 59
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=140.54 Aligned_cols=89 Identities=31% Similarity=0.534 Sum_probs=81.1
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCc
Q 023475 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (281)
Q Consensus 22 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~ 100 (281)
.+.+..+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+
T Consensus 17 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 17 NNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3445666778999999999999999999999999999999999999999999999999999999999999866 669999
Q ss_pred eeEEEeccCC
Q 023475 101 RANCNLASLG 110 (281)
Q Consensus 101 ~i~V~~a~~~ 110 (281)
+|+|++++.+
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 9999999654
No 60
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=5.1e-20 Score=142.58 Aligned_cols=87 Identities=24% Similarity=0.307 Sum_probs=79.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
......++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345567899999999999999999999999999999999999999999999999999999999999866 6699999999
Q ss_pred EeccCCCC
Q 023475 105 NLASLGRP 112 (281)
Q Consensus 105 ~~a~~~~~ 112 (281)
+++..+..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99976543
No 61
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=138.29 Aligned_cols=83 Identities=28% Similarity=0.418 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeE--------EEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CC
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF 96 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~ 96 (281)
......++|||+||++++++++|+++|++||.|++ |+|++|+.++++||||||+|.+.++|++||+.++ ..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 33456789999999999999999999999999999 9999999999999999999999999999999866 66
Q ss_pred cCCceeEEEecc
Q 023475 97 IDGRRANCNLAS 108 (281)
Q Consensus 97 i~G~~i~V~~a~ 108 (281)
|+|++|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999983
No 62
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-20 Score=134.25 Aligned_cols=76 Identities=39% Similarity=0.759 Sum_probs=73.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEec
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (281)
++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++..|+|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999999887799999999987
No 63
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-20 Score=142.82 Aligned_cols=88 Identities=27% Similarity=0.537 Sum_probs=80.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
+..+...++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 4456677999999999999999999999999999999999999899999999999999999999999876 669999999
Q ss_pred EEeccCCCC
Q 023475 104 CNLASLGRP 112 (281)
Q Consensus 104 V~~a~~~~~ 112 (281)
|+++..++.
T Consensus 82 v~~a~~~~~ 90 (104)
T 1p1t_A 82 VDNAASEKN 90 (104)
T ss_dssp EEETTCTTH
T ss_pred EEeCCCccc
Confidence 999976544
No 64
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.1e-19 Score=137.29 Aligned_cols=82 Identities=23% Similarity=0.270 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeE-EEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (281)
....++|||+||++++++++|+++|++||.|++ |+|++| .++++||||||+|++.++|++||+.+...|+++.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 345689999999999999999999999999998 888888 679999999999999999999999955779999999999
Q ss_pred ccCC
Q 023475 107 ASLG 110 (281)
Q Consensus 107 a~~~ 110 (281)
+..+
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8643
No 65
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=8.4e-20 Score=138.06 Aligned_cols=81 Identities=25% Similarity=0.489 Sum_probs=76.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (281)
.++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|++.++|++||+.++ ..|+|+.|+|+++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999999999999999999866 669999999999975
Q ss_pred CC
Q 023475 110 GR 111 (281)
Q Consensus 110 ~~ 111 (281)
++
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 66
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=8.4e-20 Score=151.00 Aligned_cols=81 Identities=19% Similarity=0.403 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCC--CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
...++|||+||+++++|++|+++|++|| .|++|+|++|+.++++||||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999977 66999999999
Q ss_pred eccC
Q 023475 106 LASL 109 (281)
Q Consensus 106 ~a~~ 109 (281)
++..
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 9964
No 67
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=1.8e-19 Score=133.87 Aligned_cols=80 Identities=19% Similarity=0.447 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
..++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++|| .++ ..|+|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999999989999999999999999999999 655 67999999999996
Q ss_pred CC
Q 023475 109 LG 110 (281)
Q Consensus 109 ~~ 110 (281)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 68
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=8e-20 Score=138.46 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
+...++|||+||++++++++|+++|++||.|+++++++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4457899999999999999999999999999999999999999999999999999999999998877 669999999999
Q ss_pred ccC
Q 023475 107 ASL 109 (281)
Q Consensus 107 a~~ 109 (281)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 853
No 69
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=138.97 Aligned_cols=81 Identities=17% Similarity=0.262 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEec
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (281)
+...++|||+|||+++|+++|+++|++||.|++|+|++|+. +++||||||+|++.++|++||+..+..|+|+.|.|+++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45678999999999999999999999999999999999987 99999999999999999999995457799999999987
Q ss_pred cC
Q 023475 108 SL 109 (281)
Q Consensus 108 ~~ 109 (281)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 70
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=4.5e-20 Score=141.07 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCC------CCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCC-c
Q 023475 29 TTYTKVFVGGLAW------ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG-R 100 (281)
Q Consensus 29 ~~~~~lfVgnLp~------~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G-~ 100 (281)
...++|||+|||. ++++++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|++||+.++ ..|+| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4468999999999 99999999999999999999999999999999999999999999999999876 66999 9
Q ss_pred eeEEEeccC
Q 023475 101 RANCNLASL 109 (281)
Q Consensus 101 ~i~V~~a~~ 109 (281)
.|+|+++..
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999964
No 71
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=7.5e-20 Score=135.55 Aligned_cols=83 Identities=25% Similarity=0.418 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCC-cccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGR-SKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~-skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
..++|||+||+.++++++|+++|++||.|++|+|++++.++. ++|||||+|.+.++|++||+.++ ..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 99999999999999999999866 6699999999999
Q ss_pred cCCCC
Q 023475 108 SLGRP 112 (281)
Q Consensus 108 ~~~~~ 112 (281)
...++
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65543
No 72
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=138.35 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEec
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (281)
....++|||+||+++++|++|+++|++|| |++|+|++|+ ++++||||||+|++.++|++||+.+..+|+++.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 45568999999999999999999999999 5599999998 799999999999999999999976457799999999998
Q ss_pred cCC
Q 023475 108 SLG 110 (281)
Q Consensus 108 ~~~ 110 (281)
...
T Consensus 90 ~~~ 92 (102)
T 1wez_A 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 73
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.2e-19 Score=138.24 Aligned_cols=83 Identities=17% Similarity=0.427 Sum_probs=75.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCc------
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI------ 97 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i------ 97 (281)
...+...++|||+||+.++++++|+++|++||.|++|+|++|+ ++++||||||+|.+.++|++||+.++ ..|
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3445677999999999999999999999999999999999998 89999999999999999999999866 557
Q ss_pred --CCceeEEEecc
Q 023475 98 --DGRRANCNLAS 108 (281)
Q Consensus 98 --~G~~i~V~~a~ 108 (281)
.++.|+|+++.
T Consensus 98 ~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 98 SAPTEPLLCKFSG 110 (114)
T ss_dssp CCCSSCBEEEECC
T ss_pred cCCCCceeEEccC
Confidence 57889999985
No 74
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=1.1e-19 Score=131.11 Aligned_cols=75 Identities=39% Similarity=0.754 Sum_probs=70.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEec
Q 023475 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (281)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (281)
+|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|++.++|++||+..+..|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999995457799999999975
No 75
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.6e-20 Score=140.88 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC---CCcCCceeEE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRANC 104 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i~V 104 (281)
+...++|||+||+++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ .+|+|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 446789999999999999999999999999999999876 6899999999999999999643 4699999999
Q ss_pred EeccCCCC
Q 023475 105 NLASLGRP 112 (281)
Q Consensus 105 ~~a~~~~~ 112 (281)
++++.++.
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99975543
No 76
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=3.8e-20 Score=139.35 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
..++|||+|||+++++++|+++|++||.|+++++++++.++++||||||+|.+.++|++||+.++ ..|+|++|+|++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45899999999999999999999999999999999999999999999999999999999999866 66999999999985
No 77
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=2.8e-19 Score=133.78 Aligned_cols=82 Identities=27% Similarity=0.493 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||++++++++|+++|++||.|++|+|+++ ++++||||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999985 68999999999999999999999866 669999999999
Q ss_pred ccCCC
Q 023475 107 ASLGR 111 (281)
Q Consensus 107 a~~~~ 111 (281)
++...
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 96543
No 78
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=3.8e-19 Score=146.16 Aligned_cols=89 Identities=29% Similarity=0.538 Sum_probs=80.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
......++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999999999999999899999999999999999999999876 5699999999
Q ss_pred EeccCCCCCC
Q 023475 105 NLASLGRPRP 114 (281)
Q Consensus 105 ~~a~~~~~~~ 114 (281)
++++.++++.
T Consensus 145 ~~a~~~~~~~ 154 (158)
T 2kn4_A 145 QMARYGRPPD 154 (158)
T ss_dssp EEECCSSCCC
T ss_pred EECCCCCCCC
Confidence 9997655443
No 79
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=2.3e-19 Score=138.08 Aligned_cols=83 Identities=29% Similarity=0.402 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
+......++|||+||++++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445678999999999999999999999999999999999999 89999999999999999999999866 669999999
Q ss_pred EEecc
Q 023475 104 CNLAS 108 (281)
Q Consensus 104 V~~a~ 108 (281)
|++++
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99984
No 80
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8e-19 Score=135.77 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCC-----ce
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG-----RR 101 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G-----~~ 101 (281)
....++|||+||++++++++|+++|++||+|++|+|++| |||||+|++.++|++||+.++ .+|+| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 446789999999999999999999999999999999886 799999999999999999877 55999 99
Q ss_pred eEEEeccCCCCC
Q 023475 102 ANCNLASLGRPR 113 (281)
Q Consensus 102 i~V~~a~~~~~~ 113 (281)
|+|++++.+...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999765443
No 81
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=135.74 Aligned_cols=81 Identities=26% Similarity=0.373 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.+...++|||+||++++++++|+++|++||.| +|+++ .++++||||||+|++.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 35567999999999999999999999999976 56666 569999999999999999999999876 56999999999
Q ss_pred eccCCC
Q 023475 106 LASLGR 111 (281)
Q Consensus 106 ~a~~~~ 111 (281)
+++.+.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 997553
No 82
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=8.3e-20 Score=131.54 Aligned_cols=75 Identities=31% Similarity=0.581 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEec
Q 023475 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (281)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (281)
+|||+|||.++++++|+++|++||.|++|++++++.+++++|||||+|++.++|++||+.++..|+|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998778899999999875
No 83
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-19 Score=141.08 Aligned_cols=84 Identities=25% Similarity=0.348 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH---HHHhcCCCEeEEEEeeCCCCC---CcccEEEEEEcCHHHHHHHHhCCC-CCcCCc
Q 023475 28 DTTYTKVFVGGLAWETQSETMR---RYFEQFGEILEAVVITDKNTG---RSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~---~~F~~~G~I~~v~v~~d~~tg---~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~ 100 (281)
....++|||+||++++++++|+ ++|++||+|++|+|++++.++ +++|||||+|++.++|++||+.++ ..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4456899999999999999999 999999999999999998754 566999999999999999999976 569999
Q ss_pred eeEEEeccCCC
Q 023475 101 RANCNLASLGR 111 (281)
Q Consensus 101 ~i~V~~a~~~~ 111 (281)
.|+|++|+.+.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999996543
No 84
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=2.7e-19 Score=156.85 Aligned_cols=81 Identities=19% Similarity=0.381 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCC--CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
..++|||+||++++||++|+++|++|| +|++|+|++|+.|+++||||||+|++.++|++||+.|+ ..|+|++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999999987 679999999999
Q ss_pred ccCC
Q 023475 107 ASLG 110 (281)
Q Consensus 107 a~~~ 110 (281)
++..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9643
No 85
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=141.97 Aligned_cols=82 Identities=32% Similarity=0.449 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
..+...++|||+||+.++++++|+++|++||.|++|+|++|+.++++||||||+|++.++|++||+.++ ..|+|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567999999999999999999999999999999999999999999999999999999999999877 5699999999
Q ss_pred Eec
Q 023475 105 NLA 107 (281)
Q Consensus 105 ~~a 107 (281)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 985
No 86
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=2.3e-19 Score=141.31 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCC---EeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V 104 (281)
....++|||+||++++|+++|+++|++||. |++|+|++|+. +++||||||+|++.++|++||+.....|+|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 456789999999999999999999999999 89999999987 99999999999999999999994336699999999
Q ss_pred EeccCC
Q 023475 105 NLASLG 110 (281)
Q Consensus 105 ~~a~~~ 110 (281)
.++..+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998643
No 87
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.2e-19 Score=131.19 Aligned_cols=80 Identities=19% Similarity=0.369 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||++++++++|+++|++| .|++|+|+++ .+++++|||||+|++.++|++||+ ++ ..|+|+.|+|++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4467899999999999999999999999 9999999999 679999999999999999999999 76 569999999999
Q ss_pred ccCC
Q 023475 107 ASLG 110 (281)
Q Consensus 107 a~~~ 110 (281)
++.+
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9654
No 88
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=134.35 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCcHHHHH----HHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 30 TYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
..++|||+||++++++++|+ ++|++||.|++|+|++|+.+ ||||||+|++.++|++||+.++ ..|+|++|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 46899999999999999999 99999999999999999865 8999999999999999999877 5599999999
Q ss_pred EeccCC
Q 023475 105 NLASLG 110 (281)
Q Consensus 105 ~~a~~~ 110 (281)
++|+..
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 999543
No 89
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=5.6e-19 Score=139.56 Aligned_cols=82 Identities=21% Similarity=0.402 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++|| .++ ..|+|+.|+|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35689999999999999999999999999999999999989999999999999999999999 565 6699999999999
Q ss_pred cCCC
Q 023475 108 SLGR 111 (281)
Q Consensus 108 ~~~~ 111 (281)
+...
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6443
No 90
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.4e-20 Score=135.08 Aligned_cols=80 Identities=28% Similarity=0.477 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|++.++|++||+.++ ..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 356899999999999999999999999999999999999999999999999999999999999876 6689988887765
Q ss_pred c
Q 023475 108 S 108 (281)
Q Consensus 108 ~ 108 (281)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 91
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-19 Score=137.39 Aligned_cols=83 Identities=19% Similarity=0.423 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCC-CCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDK-NTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~-~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
......++|||+||++++++++|+++|++|| |++|+|++++ .+++++|||||+|.+.++|++|| .++ ..|+|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3455679999999999999999999999999 9999999998 68999999999999999999999 555 679999999
Q ss_pred EEeccCC
Q 023475 104 CNLASLG 110 (281)
Q Consensus 104 V~~a~~~ 110 (281)
|++++.+
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999643
No 92
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=8.9e-19 Score=134.19 Aligned_cols=80 Identities=21% Similarity=0.355 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||++++++++|+++|++||.|++|+|++ +||||+|++.++|++||+.++ ..|+|+.|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 34578999999999999999999999999999999863 499999999999999999866 569999999999
Q ss_pred ccCCCCCCc
Q 023475 107 ASLGRPRPQ 115 (281)
Q Consensus 107 a~~~~~~~~ 115 (281)
++.+..+..
T Consensus 80 a~~~~~~~~ 88 (103)
T 2dgu_A 80 AKPPDQKRK 88 (103)
T ss_dssp CCCCCCCCC
T ss_pred cCCCcccch
Confidence 986655443
No 93
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-20 Score=139.38 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.....++|||+||++++++++|+++|++||.|++ ++++++.++++||||||+|++.++|++||+ ++ ..|+|+.|+|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999999988 777887789999999999999999999999 76 67999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+++.++.
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9975543
No 94
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=5.9e-19 Score=134.49 Aligned_cols=76 Identities=25% Similarity=0.427 Sum_probs=70.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~ 110 (281)
++|||+||++++++++|+++|++||+|++|+|+++ ++|||||+|++.++|++||+.++ ..|+|+.|+|++++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 68999999999999999999876 6799999999999765
Q ss_pred CC
Q 023475 111 RP 112 (281)
Q Consensus 111 ~~ 112 (281)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 95
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-19 Score=138.91 Aligned_cols=86 Identities=28% Similarity=0.503 Sum_probs=76.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCce
Q 023475 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (281)
Q Consensus 23 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~ 101 (281)
.....+...++|||+||+.++++++|+++|++||.|++|+|++|+ +++||||||+|++.++|++||+.++ ..|+|++
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 345556678999999999999999999999999999999999986 4589999999999999999999866 6699999
Q ss_pred eEEEeccCC
Q 023475 102 ANCNLASLG 110 (281)
Q Consensus 102 i~V~~a~~~ 110 (281)
|+|++++.+
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999643
No 96
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=1e-19 Score=135.73 Aligned_cols=79 Identities=29% Similarity=0.547 Sum_probs=72.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~ 110 (281)
++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|++.+ |++|++.++ ..|+|++|+|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 999999977 6699999999999754
Q ss_pred C
Q 023475 111 R 111 (281)
Q Consensus 111 ~ 111 (281)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 97
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.8e-19 Score=134.94 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC---CCcCCceeEE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRANC 104 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i~V 104 (281)
....++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ ..|+|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345689999999999999999999999999999998875 7899999999999999999753 4599999999
Q ss_pred EeccCCCC
Q 023475 105 NLASLGRP 112 (281)
Q Consensus 105 ~~a~~~~~ 112 (281)
++++.++.
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99975443
No 98
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=9.2e-19 Score=138.53 Aligned_cols=85 Identities=27% Similarity=0.373 Sum_probs=77.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.....++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|++.++|++||+.++ ..|+|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999866 56999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+|.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9975443
No 99
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.9e-19 Score=137.88 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEecc
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (281)
...++|||+||++++++++|+++|+.| .|++|+|++|+. +++||||||+|++.++|++||+.+...|+||.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 346899999999999999999999999 899999999986 999999999999999999999655577999999999885
Q ss_pred C
Q 023475 109 L 109 (281)
Q Consensus 109 ~ 109 (281)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 100
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=131.34 Aligned_cols=78 Identities=26% Similarity=0.474 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcC--CceeEE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID--GRRANC 104 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~--G~~i~V 104 (281)
....++|||+||+.++++++|+++|++||.|++|+++++ ||||||+|++.++|++||+.++ ..|+ |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 445689999999999999999999999999999998764 7899999999999999999866 6688 999999
Q ss_pred EeccCCC
Q 023475 105 NLASLGR 111 (281)
Q Consensus 105 ~~a~~~~ 111 (281)
++++.+.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9996543
No 101
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=132.44 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=71.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
......++|||+||++++++++|+++|++||.|+ ++++.+ +++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3455678999999999999999999999999997 677654 579999999999999999999866 6699999999
Q ss_pred EeccCCC
Q 023475 105 NLASLGR 111 (281)
Q Consensus 105 ~~a~~~~ 111 (281)
++++.++
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9996544
No 102
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=6.5e-19 Score=146.39 Aligned_cols=90 Identities=24% Similarity=0.331 Sum_probs=79.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
+......++|||+||++++++++|+++|++||.|+.|+|++++.+++++|||||+|.+.++|++||+.++ ..|.|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3345567899999999999999999999999999999999999999999999999999999999999876 569999999
Q ss_pred EEeccCCCCCC
Q 023475 104 CNLASLGRPRP 114 (281)
Q Consensus 104 V~~a~~~~~~~ 114 (281)
|.++..+..+.
T Consensus 146 V~~a~~~~~~~ 156 (165)
T 1rk8_A 146 VDWCFVKGPKR 156 (165)
T ss_dssp EEESEECC---
T ss_pred EEEecCCCCCC
Confidence 99998665543
No 103
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=138.12 Aligned_cols=81 Identities=14% Similarity=0.221 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC---CCcCCceeE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRAN 103 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i~ 103 (281)
.....++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ ..|+|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3446789999999999999999999999999999999876 7899999999999999999865 469999999
Q ss_pred EEeccCCCCC
Q 023475 104 CNLASLGRPR 113 (281)
Q Consensus 104 V~~a~~~~~~ 113 (281)
|++++.++.+
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999755443
No 104
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.77 E-value=4.4e-19 Score=135.44 Aligned_cols=85 Identities=31% Similarity=0.559 Sum_probs=77.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V 104 (281)
+..+...++|||+||++++++++|+++|++||.|++|+|++|+ ++++||||||+|++.++|++||+ ....|+|+.|.|
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v 80 (102)
T 2xs2_A 3 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKL 80 (102)
T ss_dssp CCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEE
Confidence 3445567999999999999999999999999999999999998 89999999999999999999999 556799999999
Q ss_pred EeccCCC
Q 023475 105 NLASLGR 111 (281)
Q Consensus 105 ~~a~~~~ 111 (281)
.++..+.
T Consensus 81 ~~a~~~~ 87 (102)
T 2xs2_A 81 GPAIRKQ 87 (102)
T ss_dssp EEEEECC
T ss_pred EECCcCc
Confidence 9997544
No 105
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=7.2e-19 Score=140.42 Aligned_cols=80 Identities=24% Similarity=0.316 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEe--EEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEIL--EAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (281)
....++|||+||++++||++|+++|++| .|+ +|+|++|+. +++||||||+|++.++|++||+.++..|+||.|+|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 4467899999999999999999999999 677 899999987 999999999999999999999987788999999999
Q ss_pred eccC
Q 023475 106 LASL 109 (281)
Q Consensus 106 ~a~~ 109 (281)
.+..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8853
No 106
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=133.03 Aligned_cols=83 Identities=33% Similarity=0.495 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.....++|||+||++++++++|+++|+.| .+|++++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999977 478888998899999999999999999999999866 66999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+++.+..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9965443
No 107
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=132.53 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC---CCcCCceeEE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRANC 104 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i~V 104 (281)
....++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ ..|+|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999998864 7899999999999999999754 3599999999
Q ss_pred EeccCCCC
Q 023475 105 NLASLGRP 112 (281)
Q Consensus 105 ~~a~~~~~ 112 (281)
++++.++.
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99975443
No 108
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.1e-19 Score=137.04 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=73.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
.......++|||+||++++++++|+++|++||.|++|.+..+..+++++|||||+|++.++|++||+.++ ..|+|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3344567899999999999999999999999999543333222368899999999999999999999876 669999999
Q ss_pred EEeccCCCCC
Q 023475 104 CNLASLGRPR 113 (281)
Q Consensus 104 V~~a~~~~~~ 113 (281)
|++++.++.+
T Consensus 99 v~~a~~~~~~ 108 (115)
T 2cpx_A 99 IEFGKNKKQR 108 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEccCCCCC
Confidence 9999765543
No 109
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=7.7e-19 Score=136.25 Aligned_cols=87 Identities=22% Similarity=0.400 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CC
Q 023475 18 GFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF 96 (281)
Q Consensus 18 ~~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~ 96 (281)
..........+...++|||+||++++++++|+++|++||.|++|+|+ ||||||+|.+.++|++||+.++ ..
T Consensus 18 ~~p~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~ 89 (108)
T 2jvo_A 18 GSHMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKS 89 (108)
T ss_dssp ----------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 33334445667788999999999999999999999999999999987 6899999999999999999866 66
Q ss_pred cCCceeEEEeccCCCC
Q 023475 97 IDGRRANCNLASLGRP 112 (281)
Q Consensus 97 i~G~~i~V~~a~~~~~ 112 (281)
|+|+.|+|++++.+..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 90 FANQPLEVVYSKLPAK 105 (108)
T ss_dssp ETTEECEEESCSCCC-
T ss_pred ECCeEEEEEEecCCCC
Confidence 9999999999975543
No 110
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=1.9e-18 Score=133.86 Aligned_cols=76 Identities=24% Similarity=0.487 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
....++|||+||+++ +++++|+++|++||.|++|+| ++|||||+|++.++|++||+.++ ..|+|+.|+|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345589999999999 999999999999999999988 47899999999999999998866 66999999999
Q ss_pred eccCCC
Q 023475 106 LASLGR 111 (281)
Q Consensus 106 ~a~~~~ 111 (281)
+++..+
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 996443
No 111
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=1e-18 Score=141.39 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCC---EeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
....++|||+||++++||++|+++|++||. |++|+|++|+. +++||||||+|++.++|++||+ ++ .+|+|+.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456789999999999999999999999999 89999999987 9999999999999999999999 66 669999999
Q ss_pred EEeccC
Q 023475 104 CNLASL 109 (281)
Q Consensus 104 V~~a~~ 109 (281)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 999854
No 112
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=133.25 Aligned_cols=82 Identities=22% Similarity=0.289 Sum_probs=70.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-C--CcCC
Q 023475 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P--FIDG 99 (281)
Q Consensus 23 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~--~i~G 99 (281)
.+......+++|||+||++++||++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ . .|.|
T Consensus 13 ~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 13 DDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp ----CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 34445567899999999999999999999999999999999864 6899999999999999999876 3 3899
Q ss_pred ceeEEEeccCC
Q 023475 100 RRANCNLASLG 110 (281)
Q Consensus 100 ~~i~V~~a~~~ 110 (281)
++|+|++++.+
T Consensus 87 r~i~V~~S~~k 97 (100)
T 3r27_A 87 HPAFVNYSTSQ 97 (100)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecccc
Confidence 99999999654
No 113
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=127.48 Aligned_cols=77 Identities=30% Similarity=0.509 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||++++++++|+++|++||.|++|+|+ ||||||+|++.++|++||+.++ ..|+|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3457899999999999999999999999999999987 5799999999999999999876 569999999999
Q ss_pred ccCCCC
Q 023475 107 ASLGRP 112 (281)
Q Consensus 107 a~~~~~ 112 (281)
++.+..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 975543
No 114
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=132.10 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEcCCCCCC------cHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcC
Q 023475 26 FGDTTYTKVFVGGLAWET------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID 98 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~------te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~ 98 (281)
..+...++|||+||++++ ++++|+++|++||.|++|+|+ +.++++||||||+|.+.++|++||+.++ ..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344457899999999999 789999999999999999988 3579999999999999999999999877 5599
Q ss_pred Cc-eeEEEeccC
Q 023475 99 GR-RANCNLASL 109 (281)
Q Consensus 99 G~-~i~V~~a~~ 109 (281)
|+ .|+|+++..
T Consensus 88 g~~~l~V~~a~~ 99 (105)
T 2nlw_A 88 KQHTFRVNLFTD 99 (105)
T ss_dssp TTCEEEEECSCC
T ss_pred CCceEEEEEcch
Confidence 98 999999964
No 115
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=125.45 Aligned_cols=78 Identities=31% Similarity=0.475 Sum_probs=70.4
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCC-C-CCcCCcee
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-T-PFIDGRRA 102 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~-~-~~i~G~~i 102 (281)
+..+...++|||+||+.++++++|+++|++||.|++|+++++ ||||||+|++.++|++||+.+ + ..|+|++|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 344567789999999999999999999999999999999874 789999999999999999987 6 56999999
Q ss_pred EEEecc
Q 023475 103 NCNLAS 108 (281)
Q Consensus 103 ~V~~a~ 108 (281)
+|++|+
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999973
No 116
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=130.27 Aligned_cols=77 Identities=27% Similarity=0.465 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||++++++++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ ..|+|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346689999999999999999999999999999999865 7899999999999999998866 669999999999
Q ss_pred ccCC
Q 023475 107 ASLG 110 (281)
Q Consensus 107 a~~~ 110 (281)
++.+
T Consensus 86 a~~~ 89 (99)
T 2cpj_A 86 ACHS 89 (99)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 9654
No 117
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-19 Score=142.44 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCE----eEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEI----LEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I----~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (281)
....++|||+|||+++|+++|+++|++||.| ++|+|++|+ ++++||||||+|++.++|++||+.++..|++|.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3457899999999999999999999999975 689999995 79999999999999999999999855779999999
Q ss_pred EEeccCC
Q 023475 104 CNLASLG 110 (281)
Q Consensus 104 V~~a~~~ 110 (281)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 118
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=132.89 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC---CCcCCceeEEE
Q 023475 30 TYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRANCN 105 (281)
Q Consensus 30 ~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i~V~ 105 (281)
..++|||+||++ +++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ ..|+|++|+|+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 578999999999 9999999999999999999999876 4799999999999999999865 34999999999
Q ss_pred eccCC
Q 023475 106 LASLG 110 (281)
Q Consensus 106 ~a~~~ 110 (281)
+|+..
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99643
No 119
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=135.04 Aligned_cols=83 Identities=11% Similarity=0.217 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCC---EeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (281)
+....++|||+||++++|+++|+++|+.||. |++|+|++|+. +++||||||+|.+.++|++||+.....|+|+.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 3456789999999999999999999999998 89999999988 9999999999999999999999434679999999
Q ss_pred EEeccCC
Q 023475 104 CNLASLG 110 (281)
Q Consensus 104 V~~a~~~ 110 (281)
|.++..+
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998643
No 120
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=5e-19 Score=143.69 Aligned_cols=84 Identities=20% Similarity=0.234 Sum_probs=72.9
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (281)
......++|||+||++++||++|+++|++|| |++|+|++|+. +++||||||+|++.++|++||+.+..+|+++.|+|.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 118 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEE
Confidence 3455678999999999999999999999999 77999999987 999999999999999999999554577999999999
Q ss_pred eccCCC
Q 023475 106 LASLGR 111 (281)
Q Consensus 106 ~a~~~~ 111 (281)
++..+.
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 986543
No 121
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=7.8e-20 Score=143.08 Aligned_cols=85 Identities=27% Similarity=0.400 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeE--------EEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCc
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i 97 (281)
++...++|||+||++++++++|+++|++||.|++ |+|++|+.++++||||||+|.+.++|++||+.++ ..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4556789999999999999999999999999999 9999998899999999999999999999999877 669
Q ss_pred CCceeEEEeccCCC
Q 023475 98 DGRRANCNLASLGR 111 (281)
Q Consensus 98 ~G~~i~V~~a~~~~ 111 (281)
+|++|+|++++.+.
T Consensus 83 ~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGNPIKVSFATRRA 96 (116)
Confidence 99999999996543
No 122
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=131.31 Aligned_cols=80 Identities=30% Similarity=0.524 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.+...++|||+||+.++++++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ ..|+|++|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999886 7899999999999999998866 66999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+++.+..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9975543
No 123
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-18 Score=133.87 Aligned_cols=78 Identities=14% Similarity=0.233 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC---CCcCCceeE
Q 023475 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRAN 103 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~G~~i~ 103 (281)
....++|||+||+++ ++|++|+++|++||+|++|+|++ +||||||+|++.++|++||+.++ .+|+|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999998 99999999999999999999975 37899999999999999999763 459999999
Q ss_pred EEeccCCC
Q 023475 104 CNLASLGR 111 (281)
Q Consensus 104 V~~a~~~~ 111 (281)
|++++.++
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99996443
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-18 Score=125.77 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=66.0
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCc-ee
Q 023475 31 YTKVFVGGLAWET------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR-RA 102 (281)
Q Consensus 31 ~~~lfVgnLp~~~------te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~-~i 102 (281)
.++|||+|||.++ ++++|+++|++||.|++|+|+ +.++++||||||+|.+.++|++||+.++ ..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 789999999999999999987 3579999999999999999999999987 569999 88
Q ss_pred EEE
Q 023475 103 NCN 105 (281)
Q Consensus 103 ~V~ 105 (281)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 125
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=6.3e-18 Score=135.10 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCcee
Q 023475 28 DTTYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (281)
....++|||+||++++++++|+ ++|++||.|++|.+.+ ++++||||||+|.+.++|++||+.++ ..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 6999999999988754 57899999999999999999999877 66999999
Q ss_pred EEEeccCCC
Q 023475 103 NCNLASLGR 111 (281)
Q Consensus 103 ~V~~a~~~~ 111 (281)
+|++|+.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997543
No 126
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=6.5e-18 Score=142.25 Aligned_cols=88 Identities=38% Similarity=0.604 Sum_probs=79.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeE
Q 023475 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (281)
.+.+....++|||+|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.|.
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~ 85 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE 85 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEee
Confidence 34456678999999999999999999999999999999999999999999999999999999999999977789999999
Q ss_pred EEeccCCC
Q 023475 104 CNLASLGR 111 (281)
Q Consensus 104 V~~a~~~~ 111 (281)
|.++....
T Consensus 86 v~~~~~~~ 93 (196)
T 1l3k_A 86 PKRAVSRE 93 (196)
T ss_dssp EEECCC--
T ss_pred eecccCcc
Confidence 99986543
No 127
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.8e-18 Score=126.18 Aligned_cols=78 Identities=24% Similarity=0.436 Sum_probs=69.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.....++|||+||++++++++|+++|++||.|++|+|+++ ||||+|++.++|++||+.++ ..|+|+.|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3556799999999999999999999999999999999744 99999999999999999876 56999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+++.+..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9965443
No 128
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.9e-18 Score=125.94 Aligned_cols=78 Identities=29% Similarity=0.513 Sum_probs=69.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.+...++|||+||++++++++|+++|++||.|++|+|+++ ||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4556789999999999999999999999999999999744 99999999999999999866 66999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+++.++.
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9975543
No 129
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=9.8e-18 Score=141.14 Aligned_cols=87 Identities=28% Similarity=0.558 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEec
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a 107 (281)
....++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|++.++|.+||+.++..|+|+.|+|+++
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 44568999999999999999999999999999999999998999999999999999999999998777899999999999
Q ss_pred cCCCCCC
Q 023475 108 SLGRPRP 114 (281)
Q Consensus 108 ~~~~~~~ 114 (281)
..+....
T Consensus 181 ~~k~~~~ 187 (196)
T 1l3k_A 181 LSKQEMA 187 (196)
T ss_dssp C------
T ss_pred CChhHhc
Confidence 7665543
No 130
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=6.5e-18 Score=145.61 Aligned_cols=81 Identities=27% Similarity=0.404 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
..++|||+||++++||++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999977 56999999999986
Q ss_pred CC
Q 023475 109 LG 110 (281)
Q Consensus 109 ~~ 110 (281)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 131
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=7e-18 Score=126.31 Aligned_cols=80 Identities=24% Similarity=0.465 Sum_probs=64.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (281)
......++|||+||++++||++|+++|++||.|++|+|+++ +||||||+|++.++|+++... ...+.+++|+|+
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEE
Confidence 34556789999999999999999999999999999999875 799999999999999964433 334789999999
Q ss_pred eccCCC
Q 023475 106 LASLGR 111 (281)
Q Consensus 106 ~a~~~~ 111 (281)
+|..+.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 996543
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.7e-18 Score=130.06 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||+.++++++|+++|++||.|++|+|+ ++||||||+|++.++|++||+.++ ..|+|++|+|++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3456899999999999999999999999999999997 357899999999999999999866 669999999999
Q ss_pred ccC
Q 023475 107 ASL 109 (281)
Q Consensus 107 a~~ 109 (281)
++.
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 854
No 133
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=3.7e-18 Score=133.34 Aligned_cols=78 Identities=13% Similarity=0.037 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
....++|||+||++++++++|+++|++|| +|+.|+|..+ +++|||||+|++.++|++||+.++ .+|+|+.|+|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 33568999999999999999999999999 9999988643 479999999999999999999877 56999999999
Q ss_pred eccC
Q 023475 106 LASL 109 (281)
Q Consensus 106 ~a~~ 109 (281)
+++.
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9864
No 134
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=4.4e-18 Score=126.88 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
....|||+||++++||++|+++|++||+|++++++. +||||||+|.++++|++||+.|| ..|.|+.|+|++|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356899999999999999999999999999999966 58999999999999999999987 56999999999984
No 135
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.5e-17 Score=123.27 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=68.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+|| ++++++|+++|++||+|++|+|. ++||||||+|++.++|++||+.++ ..|+|++|+|++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 99999999999999999999984 468899999999999999998877 569999999999
Q ss_pred ccCCCC
Q 023475 107 ASLGRP 112 (281)
Q Consensus 107 a~~~~~ 112 (281)
+..+..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 975543
No 136
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=123.65 Aligned_cols=76 Identities=21% Similarity=0.389 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
..++|||+||++++++++|+++|++||.|++| +.++.+++ ||||+|.+.++|++||+ ++ ..|+|+.|+|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45799999999999999999999999999987 66666565 99999999999999999 76 66999999999886
Q ss_pred CCC
Q 023475 109 LGR 111 (281)
Q Consensus 109 ~~~ 111 (281)
.++
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 443
No 137
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=7.6e-18 Score=126.99 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=71.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
..+...++|||+||+.++++++|+++|++||.|+.+ ..+++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345567999999999999999999999999988766 2358899999999999999999999877 6699999999
Q ss_pred EeccCCC
Q 023475 105 NLASLGR 111 (281)
Q Consensus 105 ~~a~~~~ 111 (281)
+++..+.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9996543
No 138
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.5e-17 Score=124.24 Aligned_cols=79 Identities=23% Similarity=0.316 Sum_probs=69.5
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcC--CCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCce
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQF--GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~ 101 (281)
.......++|||+||++++++++|+++|++| |.|++|++. ||||||+|.+.++|++||+.++ ..|+|++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445567899999999999999999999999 999998764 5699999999999999999876 5699999
Q ss_pred eEEEeccCCC
Q 023475 102 ANCNLASLGR 111 (281)
Q Consensus 102 i~V~~a~~~~ 111 (281)
|+|++++.+.
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999996544
No 139
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.1e-17 Score=140.97 Aligned_cols=81 Identities=27% Similarity=0.381 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||++++++++|+++|++||.|++|+|++++ +++++|||||+|++.++|++||+.++ ..|+|+.|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 89999999999999999999999876 669999999999
Q ss_pred ccC
Q 023475 107 ASL 109 (281)
Q Consensus 107 a~~ 109 (281)
|..
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 964
No 140
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=9.4e-18 Score=130.75 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+||+.++++++|+++|++||.|++|+|+++ ++++|||||+|.+.++|++||+.++ ..|+|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 35689999999999999999999999999999999986 5569999999999999999999866 6699999999999
Q ss_pred cCCC
Q 023475 108 SLGR 111 (281)
Q Consensus 108 ~~~~ 111 (281)
..++
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7543
No 141
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=9.4e-18 Score=131.38 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCce-----e
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR-----A 102 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~-----i 102 (281)
...++|||+||++++++++|+++|++||+|++|+|++| |||||+|++.++|++||+.|+ .+|+|++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999876 899999999999999999876 6699998 6
Q ss_pred EEEeccCC
Q 023475 103 NCNLASLG 110 (281)
Q Consensus 103 ~V~~a~~~ 110 (281)
+|+.+...
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776543
No 142
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.1e-17 Score=126.62 Aligned_cols=77 Identities=21% Similarity=0.446 Sum_probs=68.2
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 28 DTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 28 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
....++|||+||++ ++++++|+++|++||.|++|+|. ||||||+|++.++|++||+.++ ..|.|++|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999883 6899999999999999999866 66999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+++.+..
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9975443
No 143
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.8e-18 Score=126.02 Aligned_cols=77 Identities=18% Similarity=0.353 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCC-EeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC--CCcCCceeEEE
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGE-ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDGRRANCN 105 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~--~~i~G~~i~V~ 105 (281)
...++|||+||++++++++|+++|++||. |+.+.+. ++|||||+|++.++|++||+.++ ..|+|++|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45689999999999999999999999999 5555552 47899999999999999999866 45999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+++.+..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9975543
No 144
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.71 E-value=2.4e-17 Score=134.56 Aligned_cols=81 Identities=23% Similarity=0.357 Sum_probs=73.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeE
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~ 103 (281)
.......++|||+||++++++++|+++|++||.|++|+|++| +||||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344567799999999999999999999999999999999887 58999999999999999999866 669999999
Q ss_pred EEeccCC
Q 023475 104 CNLASLG 110 (281)
Q Consensus 104 V~~a~~~ 110 (281)
|++++.+
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999654
No 145
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=129.88 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCC---CCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEe
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNT---GRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~t---g~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (281)
..++|||+||++++++++|+++|++||.|+ ++++.++.+ +++||||||+|++.++|++||+.++ .++|+.|.|..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~~ 84 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCVS 84 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEecc
Confidence 468999999999999999999999999999 888888877 7999999999999999999999874 48899988886
Q ss_pred ccC
Q 023475 107 ASL 109 (281)
Q Consensus 107 a~~ 109 (281)
+..
T Consensus 85 ~~~ 87 (114)
T 2dnl_A 85 SPT 87 (114)
T ss_dssp CSS
T ss_pred CCC
Confidence 643
No 146
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=8.1e-18 Score=126.96 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCcee
Q 023475 28 DTTYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (281)
....++|||+||+.++++++|+ ++|++||.|++|+|++ +++++|||||+|.+.++|++||+.++ ..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4467899999999999999999 9999999999998874 47889999999999999999999866 56999999
Q ss_pred EEEeccCCCC
Q 023475 103 NCNLASLGRP 112 (281)
Q Consensus 103 ~V~~a~~~~~ 112 (281)
+|++++.+..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999976543
No 147
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=124.08 Aligned_cols=78 Identities=18% Similarity=0.142 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEE-EEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
...++|||+||++++++++|+++|++||.|++| .|++++.+++ |||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999999999999999 4888876443 9999999999999999866 669999999999
Q ss_pred ccCC
Q 023475 107 ASLG 110 (281)
Q Consensus 107 a~~~ 110 (281)
+..+
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9755
No 148
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=123.90 Aligned_cols=77 Identities=22% Similarity=0.487 Sum_probs=67.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (281)
..++|||+||++++++++|+++|++||.|++|+|+++ +||||||+|++.++|++|+.. ...+++++|+|+++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4689999999999999999999999999999999865 689999999999999876554 3457999999999865
Q ss_pred CCC
Q 023475 110 GRP 112 (281)
Q Consensus 110 ~~~ 112 (281)
++.
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 149
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=3.6e-17 Score=124.19 Aligned_cols=75 Identities=23% Similarity=0.522 Sum_probs=67.5
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 27 GDTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
.....++|||+||++ ++++++|+++|++||.|++|+|. ||||||+|++.++|++||+.++ ..|+|++|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999998 99999999999999999999882 7899999999999999999876 5599999999
Q ss_pred EeccC
Q 023475 105 NLASL 109 (281)
Q Consensus 105 ~~a~~ 109 (281)
++++.
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 99864
No 150
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=8.5e-17 Score=135.56 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=78.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.....++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 110 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 110 VPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34577999999999999999999999999999999999999889999999999999999999999866 66999999999
Q ss_pred eccCCC
Q 023475 106 LASLGR 111 (281)
Q Consensus 106 ~a~~~~ 111 (281)
+++.+.
T Consensus 190 ~a~~~~ 195 (198)
T 2yh0_A 190 RASVGA 195 (198)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 996543
No 151
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=7.1e-17 Score=153.96 Aligned_cols=82 Identities=24% Similarity=0.519 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+||+++||+++|+++|++||.|+.|+|+.++.+++++|||||+|.+.++|++||+.|+ .+|+|+.|+|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345899999999999999999999999999999999999999999999999999999999999987 6699999999999
Q ss_pred cCC
Q 023475 108 SLG 110 (281)
Q Consensus 108 ~~~ 110 (281)
..+
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 754
No 152
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.7e-17 Score=132.37 Aligned_cols=82 Identities=33% Similarity=0.527 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.....++|||+||+.++++++|+++|++||.|+++++++|+.+++++|||||+|.+.++|.+||+.++ ..|+|++|+|+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999866 66999999999
Q ss_pred ecc
Q 023475 106 LAS 108 (281)
Q Consensus 106 ~a~ 108 (281)
+|+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 153
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=5.5e-17 Score=134.77 Aligned_cols=81 Identities=16% Similarity=0.333 Sum_probs=70.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCC--ceeE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG--RRAN 103 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G--~~i~ 103 (281)
...+..+|||+||++++|+++|+++|++||+|++|+|..+ +++|||||+|++.++|++|++.|+ ..|.+ ++|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 3456788999999999999999999999999999998754 258999999999999999999987 55855 9999
Q ss_pred EEeccCCC
Q 023475 104 CNLASLGR 111 (281)
Q Consensus 104 V~~a~~~~ 111 (281)
|++++.++
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99997653
No 154
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=6.1e-17 Score=138.27 Aligned_cols=83 Identities=22% Similarity=0.480 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|++.++|.+||+.++ ..|+|+.|+|+++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 355899999999999999999999999999999999999899999999999999999999999866 6699999999999
Q ss_pred cCCC
Q 023475 108 SLGR 111 (281)
Q Consensus 108 ~~~~ 111 (281)
..+.
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7553
No 155
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.9e-17 Score=130.54 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=70.3
Q ss_pred cEEEEcCC----CCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcC----HHH----HHHHHh--CCC-CC
Q 023475 32 TKVFVGGL----AWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE----PEA----ARRACA--DPT-PF 96 (281)
Q Consensus 32 ~~lfVgnL----p~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~----~~~----A~~Ai~--~~~-~~ 96 (281)
++|||+|| +++++|++|+++|+.||+|.+|+++.|+.|+++||||||+|.| +++ |.+||+ .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 889988 666 55
Q ss_pred cCCceeEEEeccCC
Q 023475 97 IDGRRANCNLASLG 110 (281)
Q Consensus 97 i~G~~i~V~~a~~~ 110 (281)
|+|++|+|++.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999997543
No 156
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=6.5e-17 Score=132.15 Aligned_cols=80 Identities=29% Similarity=0.439 Sum_probs=75.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~ 109 (281)
.++|||+|||.++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++||+.++ ..|.|+.|+|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999999899999999999999999999999866 669999999999864
Q ss_pred C
Q 023475 110 G 110 (281)
Q Consensus 110 ~ 110 (281)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 157
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=5.5e-17 Score=133.09 Aligned_cols=82 Identities=24% Similarity=0.349 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
..++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35899999999999999999999999999999999999899999999999999999999999766 66999999999996
Q ss_pred CCC
Q 023475 109 LGR 111 (281)
Q Consensus 109 ~~~ 111 (281)
.+.
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 158
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.9e-17 Score=127.82 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+||+.++++++|+++|++||.|++|+|++ +||||||+|.+.++|++||+.++ ..|+|+.|+|+++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999998864 47899999999999999999876 6699999999999
Q ss_pred cCC
Q 023475 108 SLG 110 (281)
Q Consensus 108 ~~~ 110 (281)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 754
No 159
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=6.9e-18 Score=136.68 Aligned_cols=87 Identities=21% Similarity=0.368 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEE--E---eeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCce
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAV--V---ITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~--v---~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~ 101 (281)
....++|||+||++++++++|+++|++||.|++|. + ++...+++++|||||+|.+.++|++||+.++ ..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44678999999999999999999999999987641 1 1112368999999999999999999999876 5699999
Q ss_pred eEEEeccCCCCCC
Q 023475 102 ANCNLASLGRPRP 114 (281)
Q Consensus 102 i~V~~a~~~~~~~ 114 (281)
|+|++|+..+.+.
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999997655443
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=4.2e-17 Score=133.83 Aligned_cols=81 Identities=31% Similarity=0.631 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (281)
..++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+..+..|+|++|+|++|.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 46799999999999999999999999999999999999899999999999999999999999434679999999999965
Q ss_pred C
Q 023475 110 G 110 (281)
Q Consensus 110 ~ 110 (281)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 161
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=1.1e-16 Score=132.00 Aligned_cols=80 Identities=24% Similarity=0.399 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|++.++|++|++.++ ..|+|++|+|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 447899999999999999999999999999999999999889999999999999999999999866 6699999999997
Q ss_pred c
Q 023475 108 S 108 (281)
Q Consensus 108 ~ 108 (281)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=1.9e-17 Score=142.72 Aligned_cols=81 Identities=28% Similarity=0.467 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
..++|||+||++++++++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+.|+ .+|+|++|+|++|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999985 4589999999999999999999876 66999999999997
Q ss_pred CCCC
Q 023475 109 LGRP 112 (281)
Q Consensus 109 ~~~~ 112 (281)
.++.
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 5443
No 163
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=5.6e-17 Score=120.65 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=66.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
..++|||+||++++++++|+++|++| +|++|+|. ++||||||+|.+.++|++||+.++ ..|+|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46799999999999999999999999 99999884 578999999999999999999876 56999999999985
Q ss_pred C
Q 023475 109 L 109 (281)
Q Consensus 109 ~ 109 (281)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 164
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=2.2e-16 Score=134.76 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (281)
..++|||+|||+++++++|+++|++||.|++|+|++++. +++||||||+|++.++|++||+.++..|+|+.|+|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 458999999999999999999999999999999999875 8999999999999999999999988889999999999864
No 165
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=9.3e-17 Score=131.73 Aligned_cols=79 Identities=30% Similarity=0.729 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~~ 109 (281)
..++|||+|||.++|+++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+. ...|+|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999996 3579999999998853
No 166
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=7.9e-16 Score=122.37 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=66.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccE-EEEEEcCHHHHHHHHhCCC-CCcCC--ceeE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGY-GFVTFREPEAARRACADPT-PFIDG--RRAN 103 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~-aFV~F~~~~~A~~Ai~~~~-~~i~G--~~i~ 103 (281)
......|||+||++.+++++|+++|++||+|++|+|+.. +|| |||+|++.++|++|++.|+ ..|.| +.|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 345556789999999999999999999999999998652 286 9999999999999999977 56877 6899
Q ss_pred EEeccCCC
Q 023475 104 CNLASLGR 111 (281)
Q Consensus 104 V~~a~~~~ 111 (281)
|++|+.+.
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 99997553
No 167
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=1.5e-16 Score=135.92 Aligned_cols=83 Identities=29% Similarity=0.433 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 3456899999999999999999999999999999999999899999999999999999999999765 669999999998
Q ss_pred ccCC
Q 023475 107 ASLG 110 (281)
Q Consensus 107 a~~~ 110 (281)
+...
T Consensus 105 ~~~~ 108 (216)
T 2qfj_A 105 PSNI 108 (216)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 7644
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=5e-16 Score=127.28 Aligned_cols=80 Identities=25% Similarity=0.467 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCC--ceeEE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG--RRANC 104 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G--~~i~V 104 (281)
....++|||+||+.++++++|+++|++||.|++++|++++.+++++|||||+|.+.++|.+|++.++ ..|+| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 4467899999999999999999999999999999999999889999999999999999999999876 56877 99999
Q ss_pred Eec
Q 023475 105 NLA 107 (281)
Q Consensus 105 ~~a 107 (281)
++|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 169
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=123.84 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=66.0
Q ss_pred CCCCcEEEE--cCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCc-----CC
Q 023475 28 DTTYTKVFV--GGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI-----DG 99 (281)
Q Consensus 28 ~~~~~~lfV--gnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i-----~G 99 (281)
+...++||| +||+++++|++|+++|++||+|++|+|+.+ ||||||+|++.++|++||+.|| .+| .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345688999 779999999999999999999999987643 7899999999999999999987 446 68
Q ss_pred ceeEEEecc
Q 023475 100 RRANCNLAS 108 (281)
Q Consensus 100 ~~i~V~~a~ 108 (281)
+.|.|.++.
T Consensus 96 ~~l~v~~a~ 104 (114)
T 2cq2_A 96 ITLYLNFVE 104 (114)
T ss_dssp EECEEEEES
T ss_pred cEEEEEecc
Confidence 899999985
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.1e-16 Score=128.00 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=72.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEeccCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~~~ 110 (281)
++|||+|||.++++++|+++|++||.|++|+|++++. ++++|||||+|.+.++|++||+.++ ..|.|+.|+|+++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999985 7899999999999999999998866 6699999999999654
Q ss_pred C
Q 023475 111 R 111 (281)
Q Consensus 111 ~ 111 (281)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 171
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.64 E-value=3.3e-16 Score=123.89 Aligned_cols=76 Identities=21% Similarity=0.349 Sum_probs=67.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+|| ++++++|+++|++||.|++|+|. ++||||||+|++.++|++||+.++ ..|+|+.|+|++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999996 79999999999999999999985 468999999999999999998866 669999999999
Q ss_pred ccCCC
Q 023475 107 ASLGR 111 (281)
Q Consensus 107 a~~~~ 111 (281)
+..+.
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 97553
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=4.1e-16 Score=115.06 Aligned_cols=71 Identities=20% Similarity=0.432 Sum_probs=64.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcC----C-------CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CC
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF 96 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~ 96 (281)
...++|||+||++++++++|+++|++| | .|+++++.++ ||||||+|.+.++|++|| .++ ..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999998765 789999999999999999 765 66
Q ss_pred cCCceeEEEe
Q 023475 97 IDGRRANCNL 106 (281)
Q Consensus 97 i~G~~i~V~~ 106 (281)
|+|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=7.8e-16 Score=125.69 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCce--eEE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR--ANC 104 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~--i~V 104 (281)
....++|||+||+.++++++|+++|++||.|+++++++++.+++++|||||+|.+.++|.+|++.++ ..|+|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 3456899999999999999999999999999999999999889999999999999999999999876 6699965 788
Q ss_pred Eec
Q 023475 105 NLA 107 (281)
Q Consensus 105 ~~a 107 (281)
++|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=6.1e-16 Score=127.46 Aligned_cols=82 Identities=28% Similarity=0.362 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCC--CcccEEEEEEcCHHHHHHHHhCCC-CCcC---CceeE
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTG--RSKGYGFVTFREPEAARRACADPT-PFID---GRRAN 103 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg--~skG~aFV~F~~~~~A~~Ai~~~~-~~i~---G~~i~ 103 (281)
+.++|||+|||+++++++|+++|++||.|++|+|++++.++ +++|||||+|.+.++|++||+.++ ..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999999876 899999999999999999999866 3343 57788
Q ss_pred EEeccCCC
Q 023475 104 CNLASLGR 111 (281)
Q Consensus 104 V~~a~~~~ 111 (281)
+.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88876443
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=9.3e-16 Score=136.83 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=73.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCce
Q 023475 27 GDTTYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~ 101 (281)
+....++|||+||++++++++|+ ++|++||.|++|+|++ ++++||||||+|.+.++|++||+.++ ..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 35568999999999999999977 8999999999999886 58899999999999999999998877 5699999
Q ss_pred eEEEeccCCC
Q 023475 102 ANCNLASLGR 111 (281)
Q Consensus 102 i~V~~a~~~~ 111 (281)
|+|++++.+.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999996544
No 176
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=7.7e-16 Score=123.27 Aligned_cols=79 Identities=15% Similarity=0.356 Sum_probs=69.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccE-EEEEEcCHHHHHHHHhCCC-CCcCC--ceeE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGY-GFVTFREPEAARRACADPT-PFIDG--RRAN 103 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~-aFV~F~~~~~A~~Ai~~~~-~~i~G--~~i~ 103 (281)
..+.-+|||+||++.+|+++|+++|++||+|++|+|+.+ .||| |||+|++.++|++|++.|+ ..|.+ +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 456678899999999999999999999999999988764 2678 9999999999999999987 55877 8999
Q ss_pred EEeccCCC
Q 023475 104 CNLASLGR 111 (281)
Q Consensus 104 V~~a~~~~ 111 (281)
|++++.++
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99997553
No 177
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=7e-16 Score=132.70 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=69.6
Q ss_pred CCcEEEEcCCC-CCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEec
Q 023475 30 TYTKVFVGGLA-WETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (281)
Q Consensus 30 ~~~~lfVgnLp-~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a 107 (281)
..++|||+||+ +++++++|+++|++||.|++|+|+++ +||||||+|++.++|++||+.|+ ..|.|+.|+|+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999876 37999999999999999999877 6699999999999
Q ss_pred cCC
Q 023475 108 SLG 110 (281)
Q Consensus 108 ~~~ 110 (281)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 644
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.2e-15 Score=125.74 Aligned_cols=80 Identities=24% Similarity=0.364 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcC---CceeE
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID---GRRAN 103 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~---G~~i~ 103 (281)
....++|||+||+.++++++|+++|++||.|++|+|++++. ++++|||||+|.+.++|++||+.++ ..+. +++|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 34678999999999999999999999999999999999974 8999999999999999999999977 4444 49999
Q ss_pred EEecc
Q 023475 104 CNLAS 108 (281)
Q Consensus 104 V~~a~ 108 (281)
|++|.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99983
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=113.62 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=62.2
Q ss_pred cEEEEcCCCCCCcHHH----HHHHHhcC-CCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 32 TKVFVGGLAWETQSET----MRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~----L~~~F~~~-G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
+.|||+||++++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|+ ..|.||+|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999988 55899999 599998 33 999999999999999999977 56999999999
Q ss_pred eccCCCC
Q 023475 106 LASLGRP 112 (281)
Q Consensus 106 ~a~~~~~ 112 (281)
+|+.++.
T Consensus 80 ~A~~~sd 86 (96)
T 2diu_A 80 FTPKNRE 86 (96)
T ss_dssp SSCCSCC
T ss_pred ecCCCcc
Confidence 9975543
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=2.6e-15 Score=115.90 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCC-----CCcHHHHHHHHhcCCCEeEEEEeeCCCC-CCcccEEEEEEcCHHHHHHHHhCCC-CCcCCcee
Q 023475 30 TYTKVFVGGLAW-----ETQSETMRRYFEQFGEILEAVVITDKNT-GRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (281)
Q Consensus 30 ~~~~lfVgnLp~-----~~te~~L~~~F~~~G~I~~v~v~~d~~t-g~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (281)
.+++|+|.||-. +-++++|+++|++||.|++|+|++++.+ +++|||+||+|.+.++|.+|++.|+ ..++||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 467999999962 2368999999999999999999998754 6899999999999999999999977 66999999
Q ss_pred EEEeccC
Q 023475 103 NCNLASL 109 (281)
Q Consensus 103 ~V~~a~~ 109 (281)
+|+++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999853
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=1.4e-15 Score=133.82 Aligned_cols=78 Identities=21% Similarity=0.298 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCc
Q 023475 28 DTTYTKVFVGGLAWET---------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~---------te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i 97 (281)
+...++|||+||+.++ +|++|+++|++||+|++|+|+.+ ||||||+|.+.++|++|++.|+ ..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5578999999999998 79999999999999999999864 7899999999999999999976 557
Q ss_pred ------------CCceeEEEeccCCC
Q 023475 98 ------------DGRRANCNLASLGR 111 (281)
Q Consensus 98 ------------~G~~i~V~~a~~~~ 111 (281)
.|+.|.|+||+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997543
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=1.2e-14 Score=129.67 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=70.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcC-CceeE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID-GRRAN 103 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~-G~~i~ 103 (281)
......++|||+||+.++++++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+.++ ..|+ |+.|+
T Consensus 202 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 276 (282)
T 3pgw_A 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMK 276 (282)
T ss_pred cCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEE
Confidence 344567899999999999999999999999999999999764 6899999999999999999987 5588 99999
Q ss_pred EEecc
Q 023475 104 CNLAS 108 (281)
Q Consensus 104 V~~a~ 108 (281)
|++++
T Consensus 277 v~~ak 281 (282)
T 3pgw_A 277 ISFAK 281 (282)
T ss_pred EEEec
Confidence 99985
No 183
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=112.86 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCCCCc-----------HHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-C
Q 023475 28 DTTYTKVFVGGLAWETQ-----------SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P 95 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~t-----------e~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~ 95 (281)
....++|+|.||-...+ +++|+++|++||.|++|.| .|+ .+||||||+|.+.++|++||+.++ .
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34678999999944332 6899999999999999955 554 379999999999999999999887 5
Q ss_pred CcCCceeEEEeccCCC
Q 023475 96 FIDGRRANCNLASLGR 111 (281)
Q Consensus 96 ~i~G~~i~V~~a~~~~ 111 (281)
.|+|+.|+|+++..+.
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 6999999999996543
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=5.8e-15 Score=128.42 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 28 DTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 28 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
....++|||+||++ ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++||+.++ ..|.|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44678999999999 99999999999999999999999875 7899999999999999999765 66999999999
Q ss_pred eccCC
Q 023475 106 LASLG 110 (281)
Q Consensus 106 ~a~~~ 110 (281)
++..+
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99754
No 185
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=6.2e-16 Score=128.04 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 26 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
......++|||+|||.++++++|+++|++||.|.. .++++..++++||||||+|.+.++|++||+ ++ ..|.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 34567899999999999999999999999998776 445555678999999999999999999996 55 6699999999
Q ss_pred EeccCCC
Q 023475 105 NLASLGR 111 (281)
Q Consensus 105 ~~a~~~~ 111 (281)
.++..+.
T Consensus 86 ~~~~~~~ 92 (175)
T 1fje_B 86 EKPKGRD 92 (175)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9997543
No 186
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=4.5e-15 Score=122.83 Aligned_cols=79 Identities=19% Similarity=0.329 Sum_probs=70.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
.....++|||+||+.++++++|+++|++||+|+.+ ..+++++|||||+|.+.++|.+||+.++ ..|+|+.|+|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34467899999999999999999999999987765 4468999999999999999999999876 66999999999
Q ss_pred eccCC
Q 023475 106 LASLG 110 (281)
Q Consensus 106 ~a~~~ 110 (281)
++.++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99643
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.56 E-value=4.8e-15 Score=132.84 Aligned_cols=82 Identities=20% Similarity=0.324 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEeEEEEeeCCC-CCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEE
Q 023475 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKN-TGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~v~~d~~-tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V 104 (281)
....++|||+||+.+ +++++|+++|++||.|++|+|+++.. |++++|||||+|.+.++|.+|| .++ ..|+|+.|+|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 446789999999999 99999999999999999999999886 6999999999999999999999 766 5699999999
Q ss_pred EeccCC
Q 023475 105 NLASLG 110 (281)
Q Consensus 105 ~~a~~~ 110 (281)
.++.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999654
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.56 E-value=1.1e-14 Score=130.00 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
..++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|.+||+.++ ..|+|+.|+|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999998866 66999999999997
Q ss_pred CCC
Q 023475 109 LGR 111 (281)
Q Consensus 109 ~~~ 111 (281)
.+.
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 544
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.55 E-value=5.4e-15 Score=131.98 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCC-cHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 28 DTTYTKVFVGGLAWET-QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~-te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
....++|||+||++++ ++++|+++|++||.|++|+|+++. +++++|+|||+|.+.++|.+||+.++ ..|+|+.|+|+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3567899999999995 999999999999999999999987 59999999999999999999999876 66999999999
Q ss_pred eccCCCCC
Q 023475 106 LASLGRPR 113 (281)
Q Consensus 106 ~a~~~~~~ 113 (281)
++..+..+
T Consensus 260 ~a~~~~~~ 267 (284)
T 3smz_A 260 FCAPGPPG 267 (284)
T ss_dssp ECCSSSCH
T ss_pred EecCCCcc
Confidence 99766554
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=8.4e-15 Score=123.83 Aligned_cols=76 Identities=14% Similarity=0.248 Sum_probs=69.6
Q ss_pred CcEEEEcCCCC-CCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 31 YTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 31 ~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
.++|||+||+. ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++||+.++ ..|.|+.|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998875 7899999999999999999765 66999999999997
Q ss_pred CCC
Q 023475 109 LGR 111 (281)
Q Consensus 109 ~~~ 111 (281)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 191
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-13 Score=105.71 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=62.9
Q ss_pred CcEEEEcCCC-------CCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeE
Q 023475 31 YTKVFVGGLA-------WETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (281)
Q Consensus 31 ~~~lfVgnLp-------~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (281)
..+|-|.-.. .+++|++|+++|++||+|++|+|+ +++||||||+|++.++|++||+.++ .+.++.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCCeEE
Confidence 3456665433 468999999999999999999987 3679999999999999999999954 37899999
Q ss_pred EEeccCCCC
Q 023475 104 CNLASLGRP 112 (281)
Q Consensus 104 V~~a~~~~~ 112 (281)
|++++.+..
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999965543
No 192
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=9.2e-14 Score=116.82 Aligned_cols=75 Identities=17% Similarity=0.379 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC----C-------CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCc
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i 97 (281)
..++|||+|||+++++++|+++|++| | .|+++++ +++||||||+|.+.++|++|| .++ ..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 5566555 456899999999999999999 555 669
Q ss_pred CCceeEEEeccCCC
Q 023475 98 DGRRANCNLASLGR 111 (281)
Q Consensus 98 ~G~~i~V~~a~~~~ 111 (281)
+|+.|+|+++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999987554
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=3e-14 Score=126.36 Aligned_cols=80 Identities=28% Similarity=0.316 Sum_probs=72.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CC-cC---CceeEEE
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF-ID---GRRANCN 105 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~-i~---G~~i~V~ 105 (281)
.++|||+||+.++|+++|+++|++||.|++|+|++|+ +++++|||||+|.+.++|.+||+.++ .. +. ++.|.|+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 5799999999999999999999999999999999994 79999999999999999999999973 33 33 9999999
Q ss_pred eccCCC
Q 023475 106 LASLGR 111 (281)
Q Consensus 106 ~a~~~~ 111 (281)
++....
T Consensus 175 ~~~~~~ 180 (261)
T 3sde_A 175 PMEQFD 180 (261)
T ss_dssp ECCCEE
T ss_pred eccccC
Confidence 997543
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.50 E-value=5.2e-14 Score=126.06 Aligned_cols=83 Identities=14% Similarity=0.200 Sum_probs=68.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeE
Q 023475 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (281)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~ 103 (281)
....+...++|||+|||+++++++|+++|+.||.|++|+|++++.+ ++|||||+|.+.++|++||+.....|.|+.|.
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 111 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEII 111 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEE
Confidence 4455667899999999999999999999999999999999998743 58999999999999999996444679999999
Q ss_pred EEecc
Q 023475 104 CNLAS 108 (281)
Q Consensus 104 V~~a~ 108 (281)
|.++.
T Consensus 112 v~~~~ 116 (292)
T 2ghp_A 112 VSHLT 116 (292)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99873
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=7e-14 Score=114.95 Aligned_cols=75 Identities=19% Similarity=0.361 Sum_probs=64.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcC----C-------CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFID 98 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~ 98 (281)
..++|||+|||.++|+++|+++|++| | .|.++++.+ +||||||+|.+.++|++||+..+..|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 46899999999999999999999999 6 677776643 488999999999999999943346799
Q ss_pred CceeEEEeccCC
Q 023475 99 GRRANCNLASLG 110 (281)
Q Consensus 99 G~~i~V~~a~~~ 110 (281)
|+.|+|+++...
T Consensus 77 g~~i~v~~~~~~ 88 (172)
T 2g4b_A 77 GQSLKIRRPHDY 88 (172)
T ss_dssp TEECEEECCSSC
T ss_pred CceeeecCCccc
Confidence 999999987544
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.49 E-value=2.1e-14 Score=123.49 Aligned_cols=77 Identities=10% Similarity=0.076 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCCCE--eEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCc----e
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEI--LEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR----R 101 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I--~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~----~ 101 (281)
...++|||+||++++||++|+++|++||.| ++|+|+.++ ++++|||||+|++.++|.+||+.|| ..|.++ +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 346789999999999999999999999999 899998875 5667999999999999999999977 457776 5
Q ss_pred eEEEec
Q 023475 102 ANCNLA 107 (281)
Q Consensus 102 i~V~~a 107 (281)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 677765
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=1.1e-14 Score=112.09 Aligned_cols=71 Identities=25% Similarity=0.429 Sum_probs=62.9
Q ss_pred EcCCCCCCcHHHHHHHH------------hcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCcee
Q 023475 36 VGGLAWETQSETMRRYF------------EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (281)
Q Consensus 36 VgnLp~~~te~~L~~~F------------~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (281)
+.+|++++++++|+++| ++||.|++|+|++++. +++||||||+|++.++|++|++.++ ..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888877776 9999999999999875 7899999999999999999999977 66999999
Q ss_pred EEEec
Q 023475 103 NCNLA 107 (281)
Q Consensus 103 ~V~~a 107 (281)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=7.5e-14 Score=123.74 Aligned_cols=76 Identities=28% Similarity=0.489 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~ 106 (281)
....++|||+||+.++|+++|+++|++||.|++|+|.++ ||||||+|.+.++|++||+.++ ..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 356689999999999999999999999999999999654 7899999999999999999866 669999999999
Q ss_pred ccC
Q 023475 107 ASL 109 (281)
Q Consensus 107 a~~ 109 (281)
+..
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 853
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=5.9e-14 Score=108.25 Aligned_cols=81 Identities=14% Similarity=0.068 Sum_probs=68.7
Q ss_pred CCCcEEEEcCC--CCCCc--------HHHHHHHHhcCCCEeEEEEeeCCCC--CCcccEEEEEEcCHHHHHHHHhCCC-C
Q 023475 29 TTYTKVFVGGL--AWETQ--------SETMRRYFEQFGEILEAVVITDKNT--GRSKGYGFVTFREPEAARRACADPT-P 95 (281)
Q Consensus 29 ~~~~~lfVgnL--p~~~t--------e~~L~~~F~~~G~I~~v~v~~d~~t--g~skG~aFV~F~~~~~A~~Ai~~~~-~ 95 (281)
..++.|.|.|+ +.++. +++|+++|++||.|++|+|++++.+ ++++||+||+|++.++|++||+.|| .
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34678899997 33443 3689999999999999999998764 3689999999999999999999987 6
Q ss_pred CcCCceeEEEeccC
Q 023475 96 FIDGRRANCNLASL 109 (281)
Q Consensus 96 ~i~G~~i~V~~a~~ 109 (281)
.++||.|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 69999999999853
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.4e-13 Score=119.66 Aligned_cols=76 Identities=9% Similarity=0.134 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcC-CceeEEE
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID-GRRANCN 105 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~-G~~i~V~ 105 (281)
...++|||+||+.++++++|+++|++|| .|++|+|+.+ .+|||||+|++.++|++||+.++ ..|+ |+.|+|+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999999763 37899999999999999999876 6688 9999999
Q ss_pred eccC
Q 023475 106 LASL 109 (281)
Q Consensus 106 ~a~~ 109 (281)
++++
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9864
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.47 E-value=7.6e-14 Score=117.88 Aligned_cols=76 Identities=9% Similarity=0.134 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhcCC-CEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcC-CceeEEE
Q 023475 29 TTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID-GRRANCN 105 (281)
Q Consensus 29 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~-G~~i~V~ 105 (281)
...++|||+||+.++++++|+++|++|| .|++|+|+.+ .+|+|||+|.+.++|.+||+.++ ..|+ |+.|+|+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 9999999764 27899999999999999999876 6688 9999999
Q ss_pred eccC
Q 023475 106 LASL 109 (281)
Q Consensus 106 ~a~~ 109 (281)
++++
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9854
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.44 E-value=1.4e-13 Score=108.34 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=68.4
Q ss_pred CCcEEEEcCCC--CCC---cHHHHHHHHhcCCCEeEEEEeeCCC----CCCcccEEEEEEcCHHHHHHHHhCCC-CCcCC
Q 023475 30 TYTKVFVGGLA--WET---QSETMRRYFEQFGEILEAVVITDKN----TGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (281)
Q Consensus 30 ~~~~lfVgnLp--~~~---te~~L~~~F~~~G~I~~v~v~~d~~----tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G 99 (281)
.+++|+|.|+- .++ .+++|++.|++||.|++|+|++++. +++++||+||+|.+.++|.+||+.|| ..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46889999983 222 3689999999999999999999865 46788999999999999999999987 66999
Q ss_pred ceeEEEecc
Q 023475 100 RRANCNLAS 108 (281)
Q Consensus 100 ~~i~V~~a~ 108 (281)
|.|+|+++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999985
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.36 E-value=1.2e-12 Score=120.77 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=62.7
Q ss_pred CCCCcEEEEcC--CCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCc---CCc-
Q 023475 28 DTTYTKVFVGG--LAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI---DGR- 100 (281)
Q Consensus 28 ~~~~~~lfVgn--Lp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i---~G~- 100 (281)
+..+++|||+| |+.++||++|+++|++||+|++|++.. +||||||+|++.++|++||+.|| .++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 578999999999999999999987743 47999999999999999999988 434 345
Q ss_pred -eeEEEecc
Q 023475 101 -RANCNLAS 108 (281)
Q Consensus 101 -~i~V~~a~ 108 (281)
.|.|+++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 56777763
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=1.3e-11 Score=96.43 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=62.0
Q ss_pred CCcEEEEcCCCCCC----------cHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcC
Q 023475 30 TYTKVFVGGLAWET----------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID 98 (281)
Q Consensus 30 ~~~~lfVgnLp~~~----------te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~ 98 (281)
.++.|.|.|+=..- .+++|++.|++||.|++|+|.++. .+||+||+|++.++|++||+.|| .+++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35667777763211 235789999999999999987653 59999999999999999999987 6699
Q ss_pred CceeEEEeccC
Q 023475 99 GRRANCNLASL 109 (281)
Q Consensus 99 G~~i~V~~a~~ 109 (281)
||.|+|+++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=3.9e-11 Score=94.55 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=70.3
Q ss_pred CCCCCCCCCcEEEEcCCCCC-CcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcC-HHHHHHHHhCCC---CCc
Q 023475 23 NSPFGDTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE-PEAARRACADPT---PFI 97 (281)
Q Consensus 23 ~~~~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~-~~~A~~Ai~~~~---~~i 97 (281)
-........+.|+|+||+.+ +++++|+++|++||+|..|+++++.. .|||+|.+ .++|.+||++++ .+|
T Consensus 10 ~~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 10 HGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred cCcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 34556778899999999999 99999999999999999999999865 69999999 899999999874 459
Q ss_pred CCceeEEEecc
Q 023475 98 DGRRANCNLAS 108 (281)
Q Consensus 98 ~G~~i~V~~a~ 108 (281)
++..+.+++..
T Consensus 84 ~g~~~~~evL~ 94 (121)
T 1owx_A 84 RNKEVTWEVLE 94 (121)
T ss_dssp TSSSEEEEECC
T ss_pred eCcEEEEEECC
Confidence 99999988764
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=2.7e-10 Score=84.85 Aligned_cols=70 Identities=23% Similarity=0.232 Sum_probs=58.0
Q ss_pred cEEEEcCCC----CCCcH----HHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCcee
Q 023475 32 TKVFVGGLA----WETQS----ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (281)
Q Consensus 32 ~~lfVgnLp----~~~te----~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i 102 (281)
-+|+|.-++ .++-+ .+|.+.|++||+|..++++.|+ +||+|++.++|.+||+ ++ ..|+||.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 467776655 23333 5689999999999999999984 7999999999999999 66 66999999
Q ss_pred EEEeccCC
Q 023475 103 NCNLASLG 110 (281)
Q Consensus 103 ~V~~a~~~ 110 (281)
+|+++++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998654
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=4.1e-10 Score=84.33 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=57.6
Q ss_pred CcEEEEcCCCCC-----C-cH---HHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCc
Q 023475 31 YTKVFVGGLAWE-----T-QS---ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (281)
Q Consensus 31 ~~~lfVgnLp~~-----~-te---~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~ 100 (281)
.-+|+|.-++.+ + ++ .+|.+.|+.||+|..++++.|+ +||+|.+.++|.+||+ ++ ..|+||
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 357888877632 2 32 4688999999999999999984 8999999999999999 66 669999
Q ss_pred eeEEEecc
Q 023475 101 RANCNLAS 108 (281)
Q Consensus 101 ~i~V~~a~ 108 (281)
.|+|++..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99999864
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=2.5e-09 Score=92.18 Aligned_cols=67 Identities=13% Similarity=0.239 Sum_probs=59.1
Q ss_pred CCcHHHHHHHHhcCCCEeEEEEeeCC----CCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 023475 42 ETQSETMRRYFEQFGEILEAVVITDK----NTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (281)
Q Consensus 42 ~~te~~L~~~F~~~G~I~~v~v~~d~----~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~~a~ 108 (281)
+-.+++|++.|++||+|++|+|+++. .+++++|++||+|.+.++|.+||+.|+ .+++||.|.|.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 34568899999999999999998654 345899999999999999999999987 66999999999985
No 209
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=1.5e-05 Score=60.27 Aligned_cols=73 Identities=29% Similarity=0.305 Sum_probs=62.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhc-----CCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEE
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQ-----FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~-----~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~ 105 (281)
.++|.|.|||.+++++.|+-+|++ =|+|++++... +-|+|+|.+.+.|++.|+...+.|++.+|.|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 479999999999999999999987 25788887644 37899999999999999998889999999998
Q ss_pred eccCCC
Q 023475 106 LASLGR 111 (281)
Q Consensus 106 ~a~~~~ 111 (281)
....+.
T Consensus 80 P~~~~~ 85 (104)
T 2dhx_A 80 PAPPRA 85 (104)
T ss_dssp ECCCCC
T ss_pred cCCCCC
Confidence 765443
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=2.9e-06 Score=64.96 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=64.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcC-----CCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCce
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQF-----GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~-----G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~ 101 (281)
++..++|=+-|||+.++++.|+.+++.+ |.|+.|.+..|.. -|+|+|.|...|-||.-.++ .+|+||+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3446778888999999999999999999 9999999988854 89999999999999887765 6699999
Q ss_pred eEEEec
Q 023475 102 ANCNLA 107 (281)
Q Consensus 102 i~V~~a 107 (281)
|+|.-.
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 999754
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.73 E-value=0.00012 Score=54.87 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=46.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~ 93 (281)
..+.++| ++|.++...||.++|+.||. ..|+++-|. -|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3455666 99999999999999999994 467888774 8999999999999999864
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.61 E-value=0.00029 Score=53.45 Aligned_cols=73 Identities=10% Similarity=0.040 Sum_probs=60.7
Q ss_pred CCcEEEEcCCCCCC-cH----HHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCC-cCCceeE
Q 023475 30 TYTKVFVGGLAWET-QS----ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRAN 103 (281)
Q Consensus 30 ~~~~lfVgnLp~~~-te----~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~-i~G~~i~ 103 (281)
-.++|+|.||+.++ +. +.++++|..|+++.....++.-. -..|.|.+.++|.+|-.+++.+ ++|++|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35689999998866 22 56789999999998887776532 4689999999999999998855 9999999
Q ss_pred EEecc
Q 023475 104 CNLAS 108 (281)
Q Consensus 104 V~~a~ 108 (281)
|-.+.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99986
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=0.00063 Score=52.85 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=57.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCC-ceeEEEe
Q 023475 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDG-RRANCNL 106 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G-~~i~V~~ 106 (281)
....+-|.|=+.+.+. .+.|.++|++||+|++..... ...+-.|+|+++.+|++||.++...|++ -.|-|+.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 4456788888999885 566778899999999887622 2458999999999999999998877874 5566666
Q ss_pred c
Q 023475 107 A 107 (281)
Q Consensus 107 a 107 (281)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.28 E-value=0.00036 Score=52.31 Aligned_cols=53 Identities=23% Similarity=0.386 Sum_probs=45.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~ 93 (281)
+.++| ++|.++...||.++|+.|| -..|+++-|. -|||.|.+++.|..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34555 9999999999999999999 5578888874 8999999999999999853
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.68 E-value=0.0052 Score=45.45 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=50.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCC--cccEEEEEEcCHHHHHHHHhCCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGR--SKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~--skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
++|-|++||..+||+++.+.++...++.-...+..+.+.+ .-.-|+|.|.+.|++....+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 6899999999999999999999988777666655543332 23568999999999999888754
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.30 E-value=0.0018 Score=61.56 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=44.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~ 93 (281)
..++|||. ++.++++.+|.++|++||.|.++..-+++ .-|+.|+|++.+++.+++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 35799997 89999999999999999999999776653 359999999999999888664
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.18 E-value=0.0076 Score=47.47 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=54.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeE-EEEeeC--------CCCC-----CcccEEEEEEcCHHHHHHHHhCCCCCc
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITD--------KNTG-----RSKGYGFVTFREPEAARRACADPTPFI 97 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~v~~d--------~~tg-----~skG~aFV~F~~~~~A~~Ai~~~~~~i 97 (281)
..|.|=+.|.+.+ ..+.+.|++||.|++ +.+.++ +.+. ....+-.|+|+++.+|++||.++..+|
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 4566668877664 556778999999876 222110 0001 124577999999999999999999889
Q ss_pred CCceeEEEecc
Q 023475 98 DGRRANCNLAS 108 (281)
Q Consensus 98 ~G~~i~V~~a~ 108 (281)
+|..|-|...+
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99988888774
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.30 E-value=0.014 Score=46.55 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=28.3
Q ss_pred EEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 023475 60 EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 60 ~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
.++|+++. .+++|||||+|.+.++|++|++.++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhc
Confidence 57788886 4799999999999999999997754
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.76 E-value=0.0069 Score=48.15 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=34.5
Q ss_pred CCcccEEEEEEcCHHHHHHHHhCC-C-CCcCCceeEEEeccC
Q 023475 70 GRSKGYGFVTFREPEAARRACADP-T-PFIDGRRANCNLASL 109 (281)
Q Consensus 70 g~skG~aFV~F~~~~~A~~Ai~~~-~-~~i~G~~i~V~~a~~ 109 (281)
.+.+|+++|+|.+.++|++|++.+ + ..|+| .|.|.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 577999999999999999999988 6 66999 999998864
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.90 E-value=0.041 Score=41.05 Aligned_cols=64 Identities=9% Similarity=0.000 Sum_probs=45.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCC--cccEEEEEEcCHHHHHHHHhCCC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGR--SKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~--skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
+-+|.|+.||+.+||+++.+.++..-++.-...+..+.+.+ .-.-|+|.|.+.|+.....+..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 46899999999999999998887765543222222222211 12457999999999999888755
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.60 E-value=0.46 Score=45.58 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=44.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~ 93 (281)
....++|+ ++..+...+|.++|+.||. .+|+++.|. .|||.|.+.+.|..++..+
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHH
Confidence 34566665 8889999999999999995 466666653 7999999999999988874
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=69.20 E-value=14 Score=25.23 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=39.5
Q ss_pred EEEEcC-CCCCCcHHHHHHHHhcCCC-----EeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC-CCcCCceeEEE
Q 023475 33 KVFVGG-LAWETQSETMRRYFEQFGE-----ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (281)
Q Consensus 33 ~lfVgn-Lp~~~te~~L~~~F~~~G~-----I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G~~i~V~ 105 (281)
+|||.. --..++..+|..++..-+. |-.++|..+ |.||+.... .++++++.+. ..++|+.++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 456642 2345677788888876554 445655333 889988754 4677777765 56999999998
Q ss_pred ecc
Q 023475 106 LAS 108 (281)
Q Consensus 106 ~a~ 108 (281)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 763
No 223
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.93 E-value=26 Score=24.87 Aligned_cols=56 Identities=7% Similarity=0.109 Sum_probs=38.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEc-CHHHHHHHHhCCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR-EPEAARRACADPT 94 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~-~~~~A~~Ai~~~~ 94 (281)
.+|.|. +.=.--...|++.+.+.-.|.++.+-... +-+.|++. +.++..++|+...
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~------~~~~V~~~~~~~~i~~~i~~~G 77 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLED------QMVLVHTTLPSQEVQALLEGTG 77 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTT------TEEEEEESSCHHHHHHHHHTTT
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHHhC
Confidence 456666 55444557789999988888888886543 35667764 5567777887753
No 224
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=59.01 E-value=2 Score=31.98 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=0.0
Q ss_pred CCCCcEEEEcCCCCCCcHHH
Q 023475 28 DTTYTKVFVGGLAWETQSET 47 (281)
Q Consensus 28 ~~~~~~lfVgnLp~~~te~~ 47 (281)
....++|||+||++++|++.
T Consensus 94 ~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred cCCCCceEeCCCCCCccccc
Confidence 33456899999999999874
No 225
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=56.65 E-value=46 Score=24.14 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=49.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhC-CCC-------CcCCce
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTP-------FIDGRR 101 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~-~~~-------~i~G~~ 101 (281)
.+|-|-|-|+|..+-..++.-.....|----|+.+. |-|.|.|.+.++..-||.+ +++ +|.|..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 578889999999999888877777666544555543 4689999999999988876 221 356665
Q ss_pred eEEE
Q 023475 102 ANCN 105 (281)
Q Consensus 102 i~V~ 105 (281)
+.|-
T Consensus 83 cdvi 86 (129)
T 4eyt_A 83 CDVI 86 (129)
T ss_dssp EEEE
T ss_pred eeee
Confidence 5554
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=50.01 E-value=37 Score=22.18 Aligned_cols=57 Identities=9% Similarity=0.006 Sum_probs=43.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 023475 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 31 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
..++.|.++.=.--...|++.+.+ ..|..+.+-.. .+-+.|+|++.++..++|+...
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 457888888877778889999999 88888887443 3466788876677777887654
No 227
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=44.43 E-value=21 Score=26.35 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=45.7
Q ss_pred CCCCCCcHHHHHHHH-hcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEecc
Q 023475 38 GLAWETQSETMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (281)
Q Consensus 38 nLp~~~te~~L~~~F-~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (281)
.++..++-+||.... +.||.-.++....+ -..|-..+-++.++||+.++....-+.|+|-+..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~ 86 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI 86 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCCcccceEEEEec
Confidence 467778888886555 56898888877632 3578999999999999997755555556665553
No 228
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=39.92 E-value=72 Score=22.69 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=25.4
Q ss_pred EeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCC
Q 023475 58 ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (281)
Q Consensus 58 I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~ 94 (281)
|.++.+.. ..+||-||+++..++...+|+...
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCC
Confidence 55655543 379999999999999999998865
No 229
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=38.47 E-value=38 Score=24.28 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.7
Q ss_pred CEeEEEEeeCCCCCCcccEEEEEEcC
Q 023475 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (281)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~aFV~F~~ 82 (281)
+|++|+|.+-...++-|+||=|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888887766668899999999986
No 230
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=37.97 E-value=1.2e+02 Score=22.35 Aligned_cols=66 Identities=8% Similarity=0.020 Sum_probs=40.1
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHHhc-------CCCEeEEEEeeCCCCCCcccE--E-EEEEcCHHHHHHHHh
Q 023475 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQ-------FGEILEAVVITDKNTGRSKGY--G-FVTFREPEAARRACA 91 (281)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~-------~G~I~~v~v~~d~~tg~skG~--a-FV~F~~~~~A~~Ai~ 91 (281)
.......+.|.+-.|..+++++++.++.+. .-.|+++.+-++.. .+.++| + .++|+|.++.+.-..
T Consensus 16 ~~~~~mI~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~~ 91 (116)
T 3bgu_A 16 YFQGMGIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQD 91 (116)
T ss_dssp CCSSCEEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHHH
T ss_pred hcCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHhc
Confidence 333334455555578888888765555443 44677787777654 444444 4 468888877665443
No 231
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=43.53 E-value=7.1 Score=29.19 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=36.3
Q ss_pred CCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcc-cEEEEEEcCHHHHHHHHhCCCCCc
Q 023475 38 GLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSK-GYGFVTFREPEAARRACADPTPFI 97 (281)
Q Consensus 38 nLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~sk-G~aFV~F~~~~~A~~Ai~~~~~~i 97 (281)
-|-...++++|.++..+.+ +..+.+.+...+|+.. -.-+=.|.+.++|++|++.|...|
T Consensus 29 QL~a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 29 QLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 3444556677888777775 4455555433223322 112347899999999999987544
No 232
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=35.04 E-value=6.7 Score=31.06 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEc
Q 023475 46 ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81 (281)
Q Consensus 46 ~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~ 81 (281)
+||.++|...|.|+.. . ..|||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwf---n-----~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---N-----VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---E-----TTTTEEEEEEE
T ss_pred CcccccccceeEEEEE---E-----CCCCeeEEeeC
Confidence 4556666666654432 2 24889999976
No 233
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=34.03 E-value=1.4e+02 Score=22.09 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=39.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHh-------cCCCEeEEEEeeCCCC-CCcccE--E-EEEEcCHHHHHHHHh
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFE-------QFGEILEAVVITDKNT-GRSKGY--G-FVTFREPEAARRACA 91 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~-------~~G~I~~v~v~~d~~t-g~skG~--a-FV~F~~~~~A~~Ai~ 91 (281)
..+.|.+-.|..+++++++.++.+ +.-.|+++.+-++... +..++| + .++|+|.++-+.-+.
T Consensus 20 mi~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~~ 92 (121)
T 3bb5_A 20 MLYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYAV 92 (121)
T ss_dssp CEEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHHH
T ss_pred cEEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHHc
Confidence 344455557888888776554443 3567888888776542 344454 4 468999887766544
No 234
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=34.00 E-value=48 Score=24.42 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=21.6
Q ss_pred CEeEEEEeeCCCCCCcccEEEEEEcC
Q 023475 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (281)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~aFV~F~~ 82 (281)
+|++|+|.+-...++-|+||=|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888887766568899999999986
No 235
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=33.72 E-value=63 Score=26.17 Aligned_cols=56 Identities=13% Similarity=0.136 Sum_probs=36.6
Q ss_pred EEEEcCCCC-C--------CcHHHHHHHH--hcCCCEeEEEEeeCCCCCCcccEEEEEEcCH-HHHHHHHh
Q 023475 33 KVFVGGLAW-E--------TQSETMRRYF--EQFGEILEAVVITDKNTGRSKGYGFVTFREP-EAARRACA 91 (281)
Q Consensus 33 ~lfVgnLp~-~--------~te~~L~~~F--~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~-~~A~~Ai~ 91 (281)
.+.|-|++. . ....+|++.| +.|..++ |+.+.++ .-++|++.|+|.+. .--..|++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 455667765 2 3346899977 8998755 6666664 34789999999743 34444544
No 236
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=32.63 E-value=43 Score=30.48 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=40.7
Q ss_pred EEEEcCCCCCC----cHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCc
Q 023475 33 KVFVGGLAWET----QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (281)
Q Consensus 33 ~lfVgnLp~~~----te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~ 100 (281)
--+||||..-. ....+.++.++||.|..+++.. .-+|...+.+.++.++......+.++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~r 78 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGR 78 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCC
Confidence 34688876432 2356778888999998887632 33788899999999997754444333
No 237
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=32.56 E-value=52 Score=24.42 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.3
Q ss_pred CEeEEEEeeCCCCCCcccEEEEEEcC
Q 023475 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (281)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~aFV~F~~ 82 (281)
+|++|+|.+-...++-|+||=|+|++
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57888887666668899999999986
No 238
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=32.35 E-value=70 Score=27.52 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=26.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEee
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVIT 65 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~ 65 (281)
..+.|+|||.+++...|.++++. ..+.++.++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46789999999999999999987 6665554433
No 239
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=30.96 E-value=36 Score=29.45 Aligned_cols=34 Identities=9% Similarity=0.189 Sum_probs=26.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEee
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVIT 65 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~ 65 (281)
..+.|+|||..++...|.++++....+.++.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999998655566655444
No 240
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.39 E-value=25 Score=23.93 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=9.5
Q ss_pred cccEEEEEEcCH
Q 023475 72 SKGYGFVTFREP 83 (281)
Q Consensus 72 skG~aFV~F~~~ 83 (281)
.+..|||.|+|.
T Consensus 36 ~~~~ClV~FeD~ 47 (68)
T 2e5p_A 36 AREVCLVQFEDD 47 (68)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 356899999874
No 241
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=29.71 E-value=1e+02 Score=22.23 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=45.0
Q ss_pred CCCCCCcHHHHHHHH-hcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEecc
Q 023475 38 GLAWETQSETMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (281)
Q Consensus 38 nLp~~~te~~L~~~F-~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~a~ 108 (281)
-++.-+.-++|+... ..||.-.++....+. -.|-..+-++.++||+.++....-+.|+|-+..
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~ 82 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILDRSSSMKSLRILLLS 82 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECSS--------CEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEeccCHHHHHHHHHHhccCccccceEEEEEc
Confidence 456677778876555 569988888776442 378889999999999997755555555555543
No 242
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=29.04 E-value=1.2e+02 Score=19.84 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEc----CHHHHHHHHhCCC
Q 023475 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR----EPEAARRACADPT 94 (281)
Q Consensus 30 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~----~~~~A~~Ai~~~~ 94 (281)
...+|.|.++.-..-...|++.+.+...|.++.+-.. .+-+.|+|+ +.++..++|+.+.
T Consensus 9 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G 71 (84)
T 1q8l_A 9 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAMG 71 (84)
T ss_dssp EEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHTT
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 3456888888777677789999999888888887443 346788885 3455666676643
No 243
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=27.79 E-value=80 Score=25.16 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=29.3
Q ss_pred CcHHHHHHHHhcCCCEe---EEEEeeCCCCCCcccEEEEE
Q 023475 43 TQSETMRRYFEQFGEIL---EAVVITDKNTGRSKGYGFVT 79 (281)
Q Consensus 43 ~te~~L~~~F~~~G~I~---~v~v~~d~~tg~skG~aFV~ 79 (281)
.|+++|+++=++.|++. ++.+..|..+|+.+.++|-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58999999999999875 56666775469999888763
No 244
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=27.17 E-value=73 Score=28.69 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=19.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHhc
Q 023475 33 KVFVGGLAWETQSETMRRYFEQ 54 (281)
Q Consensus 33 ~lfVgnLp~~~te~~L~~~F~~ 54 (281)
.+.|+|||.+++...|.++++.
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999988874
No 245
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=26.86 E-value=86 Score=23.17 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=43.3
Q ss_pred CCCCCCcHHHHHHHH-hcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEe
Q 023475 38 GLAWETQSETMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (281)
Q Consensus 38 nLp~~~te~~L~~~F-~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (281)
-++.-+.-++|+... ..||.-.++....+. -.|-..+-++.++||+.++....-+.|+|-+
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL 107 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILDRSSSMKSLRILL 107 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECSS--------CEEECCSHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecce--------EEEecccHHHHHHHHHHhccCccccceEEEE
Confidence 456778888887655 468988888776443 3788889999999999976444444455444
No 246
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=26.39 E-value=32 Score=24.08 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=9.4
Q ss_pred cccEEEEEEcCH
Q 023475 72 SKGYGFVTFREP 83 (281)
Q Consensus 72 skG~aFV~F~~~ 83 (281)
.+..|+|.|+|.
T Consensus 53 ~~e~ClV~F~D~ 64 (79)
T 2m0o_A 53 AREVCLVQFEDD 64 (79)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCEEEEEEcCC
Confidence 356899999874
No 247
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=25.99 E-value=1.5e+02 Score=21.37 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=37.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHh-------cCCCEeEEEEeeCCCC-CCcccE--E-EEEEcCHHHHHHHHh
Q 023475 32 TKVFVGGLAWETQSETMRRYFE-------QFGEILEAVVITDKNT-GRSKGY--G-FVTFREPEAARRACA 91 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~-------~~G~I~~v~v~~d~~t-g~skG~--a-FV~F~~~~~A~~Ai~ 91 (281)
+.|.+-.|..+++++++.++.+ +.-.|+++.+-++... +..++| + .++|+|.++.+.-..
T Consensus 12 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~ 82 (112)
T 1q4r_A 12 KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIA 82 (112)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHhC
Confidence 3444446888888877554443 3456778887776542 334454 4 468999888776554
No 248
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=25.87 E-value=1.3e+02 Score=19.10 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=42.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHhCC
Q 023475 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE----PEAARRACADP 93 (281)
Q Consensus 27 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~----~~~A~~Ai~~~ 93 (281)
......++.|.++.-..-...|++.+.+...|.++.+-.. .+-+.|+|+. .++..++|+..
T Consensus 5 ~~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 5 MGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp TTCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred CCcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 3444567888898877778889999998877877777544 3467788864 34556666654
No 249
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=25.75 E-value=1e+02 Score=22.51 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=43.7
Q ss_pred CCCCCCcHHHHHHHH-hcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhCCCCCcCCceeEEEe
Q 023475 38 GLAWETQSETMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (281)
Q Consensus 38 nLp~~~te~~L~~~F-~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G~~i~V~~ 106 (281)
-++.-+.-++|+... ..||.-.++....+ --.|-..+-++.++||+.++....-+.|+|-+
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~~kSLrIlL 96 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILL 96 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccCccccceEEEE
Confidence 467778888887666 56998888877644 34788899999999999976444444444433
No 250
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=25.00 E-value=35 Score=23.16 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=9.8
Q ss_pred cccEEEEEEcCH
Q 023475 72 SKGYGFVTFREP 83 (281)
Q Consensus 72 skG~aFV~F~~~ 83 (281)
.++.|+|.|+|-
T Consensus 40 ~~gtC~V~F~D~ 51 (66)
T 2eqj_A 40 LKQSCFIIFEDS 51 (66)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 468999999874
No 251
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.56 E-value=24 Score=23.62 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=9.9
Q ss_pred CcccEEEEEEcCH
Q 023475 71 RSKGYGFVTFREP 83 (281)
Q Consensus 71 ~skG~aFV~F~~~ 83 (281)
..+..|||.|+|.
T Consensus 33 ~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 33 SSKQSCLVTFEDN 45 (63)
T ss_dssp STTSEEEEEETTS
T ss_pred cCCCEEEEEEccC
Confidence 3467899999874
No 252
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=23.66 E-value=41 Score=23.55 Aligned_cols=20 Identities=10% Similarity=0.390 Sum_probs=16.7
Q ss_pred EcCCCCCCcHHHHHHHHhcC
Q 023475 36 VGGLAWETQSETMRRYFEQF 55 (281)
Q Consensus 36 VgnLp~~~te~~L~~~F~~~ 55 (281)
|=+|+.+.+.++|++.|.+.
T Consensus 22 iLgv~~~as~~eIk~ayr~l 41 (88)
T 2cug_A 22 VLGVSRTASQADIKKAYKKL 41 (88)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCcCCCCCHHHHHHHHHHH
Confidence 44899999999999988764
No 253
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=23.55 E-value=61 Score=31.66 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=39.5
Q ss_pred CCCCCCcHHHHHHHHh----cCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHHhC
Q 023475 38 GLAWETQSETMRRYFE----QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (281)
Q Consensus 38 nLp~~~te~~L~~~F~----~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai~~ 92 (281)
.+..+.+--||..+|. .+|.|+++.|-..+. -+.+.+++|.|.|.++|.+++..
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~ 407 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLRE 407 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHH
Confidence 3445555567888883 578899987765443 44566889999999999988865
No 254
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=23.47 E-value=2e+02 Score=20.31 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=34.8
Q ss_pred EcCCCCCCcHHHHHHHHh-------cCCCEeEEEEeeCCCCCCcccE--E-EEEEcCHHHHHHHHh
Q 023475 36 VGGLAWETQSETMRRYFE-------QFGEILEAVVITDKNTGRSKGY--G-FVTFREPEAARRACA 91 (281)
Q Consensus 36 VgnLp~~~te~~L~~~F~-------~~G~I~~v~v~~d~~tg~skG~--a-FV~F~~~~~A~~Ai~ 91 (281)
+-.|..+++++++.++.+ +.-.|+++.+-++.. .+.++| + .++|+|.++.+.-..
T Consensus 10 lfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~Y~~ 74 (103)
T 2qyc_A 10 MMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDAYQV 74 (103)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHHHTT
T ss_pred EEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHHHhC
Confidence 335777777665444432 366788888887754 444544 4 468888887665443
No 255
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=23.08 E-value=48 Score=31.31 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=29.4
Q ss_pred HHHHHH--hcCCCEeEEEEeeCCCCCCcccEEEEEEcCHHHHHHHH
Q 023475 47 TMRRYF--EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90 (281)
Q Consensus 47 ~L~~~F--~~~G~I~~v~v~~d~~tg~skG~aFV~F~~~~~A~~Ai 90 (281)
+|+.+| +.+|.|+++.+...+. .+....+++.|.+.+++.+++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 456777 3689999987765543 344556789999877765543
No 256
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=22.67 E-value=1.8e+02 Score=19.54 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=40.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEcC----HHHHHHHHhCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE----PEAARRACADP 93 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~~----~~~A~~Ai~~~ 93 (281)
.+|.|.++.-..-...|++.+.+.-.|.++.+-... +-+.|+|+. .++..++|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~------~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLEN------RSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTT------TEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 457777776655667789999998888888875543 467888863 45666777765
No 257
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=22.28 E-value=61 Score=27.53 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=25.6
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCEeEEEEee
Q 023475 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVIT 65 (281)
Q Consensus 34 lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~ 65 (281)
..|+|||..++...|.++++....+.++.++.
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 47999999999999999998766666655443
No 258
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=21.24 E-value=1.6e+02 Score=18.30 Aligned_cols=56 Identities=11% Similarity=0.183 Sum_probs=40.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhcCCCEeEEEEeeCCCCCCcccEEEEEEc---CHHHHHHHHhCC
Q 023475 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR---EPEAARRACADP 93 (281)
Q Consensus 32 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~v~~d~~tg~skG~aFV~F~---~~~~A~~Ai~~~ 93 (281)
.++.|.++.-.--...|++.+.+...|.++.+-... +-+.|+|. +.++..++|+..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~ 62 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVERA 62 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHHT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHHc
Confidence 467788887777778899999998888888876543 35678774 345566666654
No 259
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=20.23 E-value=96 Score=20.69 Aligned_cols=22 Identities=18% Similarity=0.576 Sum_probs=17.1
Q ss_pred EEEEeeCCCCCCcccEEEEEEcC
Q 023475 60 EAVVITDKNTGRSKGYGFVTFRE 82 (281)
Q Consensus 60 ~v~v~~d~~tg~skG~aFV~F~~ 82 (281)
.++|+.++. ..+.|++.|.|+|
T Consensus 21 ~arlllnrR-ps~~G~~wiKyED 42 (62)
T 1igq_A 21 PARLILNRR-PPAEGYAWLKYED 42 (62)
T ss_dssp EEEECTTBC-CSSTTEEEEEETT
T ss_pred hhhhhhccC-CCcCceEEEEEec
Confidence 567777764 4578999999987
Done!