BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023476
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip
Revealed By Cryo-electron Microscopy
pdb|3J1Z|Q Chain Q, Inward-facing Conformation Of The Zinc Transporter Yiip
Revealed By Cryo-electron Microscopy
Length = 306
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 66/146 (45%), Gaps = 1/146 (0%)
Query: 122 AFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVLE 181
A + +V+A + + D+ N L+A++L+ Y W D + A+++A Y +
Sbjct: 143 ATNSTVVEADSLHYKSDLFLNAAVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYR 202
Query: 182 NVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQE 241
++ +L+ R + Q++ + + + +R G F++ + L ++ L E
Sbjct: 203 SIQALLDRELDEDTRQRIKLIA-KEDPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNE 261
Query: 242 AHDIGESLQEKLELLPEIERAFVHLD 267
AH I ++ +++ E +H D
Sbjct: 262 AHSITDTTGLRVKAAFEDAEVIIHQD 287
>pdb|3I4R|B Chain B, Nup107(Aa658-925)NUP133(AA517-1156) Complex, H.Sapiens
Length = 644
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFG-----SHYFVEVDIVLPASMPLQEAHDIGES- 248
+LQ +L W H + + ++ A G + YF + +L S A D E
Sbjct: 416 FLQAHEHLSWLHEINSQELEKAHATLLGLANMETRYFAKKKTLLGLSKLAALASDFSEDM 475
Query: 249 LQEKLELLPEIERAFVH 265
LQEK+E + E ER +H
Sbjct: 476 LQEKIEEMAEQERFLLH 492
>pdb|2ZZT|A Chain A, Crystal Structure Of The Cytosolic Domain Of The Cation
Diffusion Facilitator Family Protein
Length = 107
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 216 VRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESL-QEKLELLPEIERAFVHLD 267
VR G+ YF+E DI + +++AH++ + +E L+ +IE +H++
Sbjct: 31 VRIRRVGTKYFIEXDIEVDGKXSVKDAHELTVKIRKEXLKRRDDIEDVTIHVE 83
>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip
pdb|2QFI|B Chain B, Structure Of The Zinc Transporter Yiip
Length = 300
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 121 RAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVL 180
R ++ V+A + DV+ N L+A+ L+ Y D + A+ + +Y + +
Sbjct: 140 RRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGY 199
Query: 181 ENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQ 240
E V SL+ R+ E Q++ + + +R G F+++ + + S+PL
Sbjct: 200 EAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLV 258
Query: 241 EAHDIGESLQEKL 253
+AH + + +++ +
Sbjct: 259 QAHMVADQVEQAI 271
>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|B Chain B, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|C Chain C, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|D Chain D, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
Length = 283
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 121 RAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVL 180
R ++ V+A + DV+ N L+A+ L+ Y D + A+ + +Y + +
Sbjct: 133 RRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGY 192
Query: 181 ENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQ 240
E V SL+ R+ E Q++ + + +R G F+++ + + S+PL
Sbjct: 193 EAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLV 251
Query: 241 EAHDIGESLQEKL 253
+AH + + +++ +
Sbjct: 252 QAHMVADQVEQAI 264
>pdb|3CQG|B Chain B, Nucleoporin Nup107/nup133 Interaction Complex, Delta
Finger Mutant
Length = 227
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 201 YLCWNHHKSIRHIDTVRAYTFG-----SHYFVEVDIVLPASMPLQEAHDIGES-LQEKLE 254
+L W H + + ++ A G + YF + +L S A D E LQEK+E
Sbjct: 5 HLSWLHEINSQELEKAHATLLGLANMETRYFAKKKTLLGLSKLAALASDFSEDMLQEKIE 64
Query: 255 LLPEIERAFVH 265
+ E ER +H
Sbjct: 65 EMAEQERFLLH 75
>pdb|3CQC|B Chain B, Nucleoporin Nup107/nup133 Interaction Complex
Length = 227
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 202 LCWNHHKSIRHIDTVRAYTFG-----SHYFVEVDIVLPASMPLQEAHDIGES-LQEKLEL 255
L W H + + ++ A G + YF + +L S A D E LQEK+E
Sbjct: 6 LSWLHEINSQELEKAHATLLGLANMETRYFAKKKTLLGLSKLAALASDFSEDMLQEKIEE 65
Query: 256 LPEIERAFVH 265
+ E ER +H
Sbjct: 66 MAEQERFLLH 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,490,343
Number of Sequences: 62578
Number of extensions: 271731
Number of successful extensions: 623
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 11
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)