Query 023476
Match_columns 281
No_of_seqs 133 out of 1362
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 07:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 100.0 4.3E-55 1.5E-59 384.6 17.4 264 2-272 24-292 (306)
2 3h90_A Ferrous-iron efflux pum 100.0 1.8E-54 6.3E-59 377.3 18.5 263 2-271 15-282 (283)
3 3byp_A CZRB protein; membrane 99.7 1.1E-15 3.7E-20 110.5 11.0 84 185-270 1-87 (94)
4 2zzt_A Putative uncharacterize 99.6 1E-14 3.6E-19 107.8 9.8 84 187-271 1-87 (107)
5 3j1z_P YIIP, cation efflux fam 96.7 0.00056 1.9E-08 59.3 1.9 70 13-90 143-212 (306)
6 3h90_A Ferrous-iron efflux pum 96.5 0.00078 2.7E-08 57.7 1.6 70 13-90 134-203 (283)
7 1ib8_A Conserved protein SP14. 88.2 2.9 0.0001 32.2 8.7 84 197-281 12-99 (164)
8 3cq1_A Putative uncharacterize 81.3 8.5 0.00029 26.9 7.8 71 195-271 7-86 (103)
9 2jsx_A Protein NAPD; TAT, proo 76.8 11 0.00038 26.1 7.0 66 192-270 15-80 (95)
10 1otg_A 5-carboxymethyl-2-hydro 76.7 19 0.00065 26.1 9.6 83 193-277 18-118 (125)
11 3lno_A Putative uncharacterize 73.5 16 0.00055 25.7 7.4 47 225-274 46-93 (108)
12 1uwd_A Hypothetical protein TM 72.2 19 0.00064 25.1 7.4 43 227-271 44-87 (103)
13 3lax_A Phenylacetate-coenzyme 69.9 24 0.00084 24.4 9.6 62 197-259 17-80 (109)
14 1rwu_A Hypothetical UPF0250 pr 62.3 33 0.0011 24.3 7.0 61 192-260 46-106 (109)
15 3e6q_A Putative 5-carboxymethy 61.2 30 0.001 25.9 7.0 78 193-272 40-133 (146)
16 3gxs_A Phenylacetate-coenzyme 60.5 39 0.0013 23.4 9.6 69 197-268 17-88 (109)
17 1vq3_A Phosphoribosylformylgly 59.2 41 0.0014 23.2 9.4 61 196-266 33-93 (94)
18 1gtd_A MTH169; synthetase, FGA 59.1 36 0.0012 22.8 6.5 67 192-270 17-83 (85)
19 3tuf_A Stage III sporulation p 52.9 20 0.00068 28.4 4.8 65 194-269 132-196 (197)
20 1u9d_A Hypothetical protein VC 51.0 19 0.00065 26.2 4.2 54 225-281 68-122 (122)
21 3zzp_A TS9, ribosomal protein 49.6 53 0.0018 21.6 6.8 67 185-255 8-74 (77)
22 2kjw_A TS9, 30S ribosomal prot 48.2 65 0.0022 22.2 6.7 68 185-256 8-75 (96)
23 2dbb_A Putative HTH-type trans 48.2 78 0.0027 23.1 8.4 64 191-266 77-141 (151)
24 2jp3_A FXYD domain-containing 46.5 36 0.0012 21.7 4.4 31 49-80 8-38 (67)
25 3abf_A 4-oxalocrotonate tautom 45.8 26 0.00087 21.5 3.8 46 230-275 5-52 (64)
26 2yx5_A UPF0062 protein MJ1593; 44.6 63 0.0022 21.4 5.8 66 192-268 16-81 (83)
27 2f1f_A Acetolactate synthase i 44.1 89 0.0031 23.8 7.3 64 192-264 13-76 (164)
28 2jvf_A De novo protein M7; tet 41.8 29 0.00098 22.5 3.4 49 215-269 9-57 (96)
29 1ghh_A DINI, DNA-damage-induci 38.6 66 0.0023 21.4 5.0 40 226-265 2-43 (81)
30 2zxe_G FXYD10, phospholemman-l 36.5 47 0.0016 21.6 3.8 31 49-80 10-40 (74)
31 3mb2_A 4-oxalocrotonate tautom 36.4 31 0.0011 22.0 3.1 43 231-273 6-50 (72)
32 2cg4_A Regulatory protein ASNC 36.3 98 0.0033 22.6 6.4 59 195-266 81-140 (152)
33 3m21_A Probable tautomerase HP 35.7 52 0.0018 20.4 4.1 47 229-275 3-54 (67)
34 1hfo_A Migration inhibitory fa 34.8 1.1E+02 0.0038 21.0 6.6 51 225-275 55-107 (113)
35 1uiz_A MIF, macrophage migrati 34.5 1.1E+02 0.0039 21.1 6.7 51 225-275 56-108 (115)
36 3m20_A 4-oxalocrotonate tautom 34.2 45 0.0015 20.4 3.5 46 229-275 3-50 (62)
37 2x4k_A 4-oxalocrotonate tautom 33.9 65 0.0022 19.2 4.3 45 230-274 7-53 (63)
38 2cvi_A 75AA long hypothetical 33.3 76 0.0026 20.6 4.8 59 196-267 15-74 (83)
39 2os5_A Acemif; macrophage migr 33.3 1.2E+02 0.0042 21.1 6.3 51 225-275 56-108 (119)
40 2pc6_A Probable acetolactate s 32.9 96 0.0033 23.6 5.8 64 192-264 14-77 (165)
41 2zbc_A 83AA long hypothetical 32.3 99 0.0034 19.7 5.3 60 196-267 15-74 (83)
42 2yy3_A Elongation factor 1-bet 32.2 1.2E+02 0.0041 20.6 7.6 61 194-265 23-86 (91)
43 2opa_A Probable tautomerase YW 32.1 39 0.0013 20.3 3.0 45 230-274 4-50 (61)
44 3qov_A Phenylacetate-coenzyme 31.1 1.5E+02 0.0052 25.7 7.9 59 196-256 343-404 (436)
45 3ry0_A Putative tautomerase; o 30.8 42 0.0014 20.7 3.0 46 230-275 4-51 (65)
46 3ej9_A Alpha-subunit of trans- 30.5 31 0.001 22.4 2.3 45 230-274 5-51 (76)
47 2cyy_A Putative HTH-type trans 30.2 1.5E+02 0.005 21.6 6.5 63 192-268 76-139 (151)
48 3eb7_A Insecticidal delta-endo 30.0 2.3E+02 0.0079 26.2 9.1 66 138-203 5-75 (589)
49 1otf_A 4-oxalocrotonate tautom 29.3 40 0.0014 20.3 2.7 44 230-273 4-49 (62)
50 3mgj_A Uncharacterized protein 28.9 1.6E+02 0.0055 21.1 7.8 76 190-269 12-88 (118)
51 2pn6_A ST1022, 150AA long hypo 28.8 1.5E+02 0.0052 21.4 6.4 63 193-268 75-138 (150)
52 2zw2_A Putative uncharacterize 28.7 1.4E+02 0.0047 20.2 6.3 68 192-270 20-88 (92)
53 3bde_A MLL5499 protein; stress 27.8 1.6E+02 0.0054 20.9 6.0 43 228-270 24-66 (120)
54 1mli_A Muconolactone isomerase 27.2 1.2E+02 0.0041 20.9 4.9 27 225-251 3-29 (96)
55 2aal_A Malonate semialdehyde d 26.6 1.7E+02 0.0059 20.7 6.6 50 225-275 65-116 (131)
56 2e1c_A Putative HTH-type trans 26.1 1.7E+02 0.0057 22.1 6.3 63 192-268 96-159 (171)
57 2xcz_A Possible ATLS1-like lig 25.7 1.6E+02 0.0056 20.2 5.8 50 227-276 58-109 (115)
58 2i52_A Hypothetical protein; s 24.9 61 0.0021 23.3 3.1 28 240-267 41-68 (121)
59 2vv5_A MSCS, small-conductance 23.9 3E+02 0.01 22.6 10.0 75 194-269 200-280 (286)
60 1gh8_A Translation elongation 23.2 1.7E+02 0.0058 19.7 5.1 61 194-265 21-83 (89)
61 2ko1_A CTR148A, GTP pyrophosph 22.8 1.5E+02 0.0053 18.8 9.0 63 192-264 15-77 (88)
62 2y27_A Phenylacetate-coenzyme 22.7 3.5E+02 0.012 23.3 8.6 59 196-255 345-405 (437)
63 2v50_A Multidrug resistance pr 22.4 2.4E+02 0.0081 28.2 8.1 97 161-258 9-120 (1052)
64 1veh_A NIFU-like protein hirip 22.1 1.4E+02 0.0049 20.2 4.5 36 228-263 46-84 (92)
65 2ogf_A Hypothetical protein MJ 21.7 79 0.0027 22.8 3.2 28 240-267 46-73 (122)
66 3bgu_A Ferredoxin-like protein 21.5 1.9E+02 0.0066 20.2 5.4 45 225-269 22-66 (116)
67 2wkb_A Macrophage migration in 21.5 2.2E+02 0.0074 20.0 6.2 49 226-274 57-107 (125)
68 2fgc_A Acetolactate synthase, 21.1 2.1E+02 0.0071 22.4 5.8 64 192-264 39-102 (193)
69 3ce8_A Putative PII-like nitro 20.4 2.4E+02 0.0083 20.1 6.6 60 191-255 30-103 (120)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=4.3e-55 Score=384.61 Aligned_cols=264 Identities=19% Similarity=0.241 Sum_probs=242.1
Q ss_pred hhhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 023476 2 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILES 81 (281)
Q Consensus 2 ~~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~es 81 (281)
+++++|+++|+++||.||++||+|++.|+++.++++++.+.++||+|++|||||+|+|++++++++++++++++++++|+
T Consensus 24 ~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~~~l~~~~~~i~~ea 103 (306)
T 3j1z_P 24 TLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQSAFIMGSAFLLLFYG 103 (306)
T ss_dssp HHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHhHHhhhHHHHHHHHHHHHHHHHhhh-c
Q 023476 82 LRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVITNIIGLVAVLLANYI-D 156 (281)
Q Consensus 82 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~~-~ 156 (281)
++++++|++. +...++++++.++.+.+..++++.++ .+|.++++++.|+++|+++| ++++++.++.++ |
T Consensus 104 i~~l~~p~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s-~~vli~~~~~~~g~ 177 (306)
T 3j1z_P 104 GERLLNPSPV-----ENATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLN-AAVLLALVLSQYGW 177 (306)
T ss_dssp HHTTTTTCCG-----GGTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCC-TTCCCTTSSCCSSS
T ss_pred hhheecCCCc-----cccccchhhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhh-hHHHHHHHHHHhCc
Confidence 9999998872 33455667777888888888888754 57899999999999999997 666666655555 7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCC
Q 023476 157 DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS 236 (281)
Q Consensus 157 ~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~ 236 (281)
+|+||++++++++++++.+++++|++...|+|++||++..++|++.+++ .|||.++||+|+|+.|+++++++|+++|++
T Consensus 178 ~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~~-~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~ 256 (306)
T 3j1z_P 178 WWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKE-DPRVLGLHDLRTRQAGKTVFIQFHLELDGN 256 (306)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-STTBCCCCCBCCEEETTEEEEEECCEECTT
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhc-CCCcceeeeEEEEEECCcEEEEEEEEECCC
Confidence 9999999999999999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCC
Q 023476 237 MPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTH 272 (281)
Q Consensus 237 ~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~~ 272 (281)
+|++|+|++.++++++|++.+++.+++||+||...+
T Consensus 257 ~sl~eah~i~~~ie~~l~~~~~~~~v~IhveP~~~e 292 (306)
T 3j1z_P 257 LSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVE 292 (306)
T ss_dssp SBHHHHHHHHHHHHHHHHHHSTTCEEEECCEETTSC
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCC
Confidence 999999999999999998756778999999998643
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=1.8e-54 Score=377.34 Aligned_cols=263 Identities=19% Similarity=0.234 Sum_probs=240.0
Q ss_pred hhhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 023476 2 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILES 81 (281)
Q Consensus 2 ~~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~es 81 (281)
+++++|+++|+++||.||++||+|++.|+++.++++++.+.++||+|++|||||+|+|+++++++++++++.++++++|+
T Consensus 15 ~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~ea 94 (283)
T 3h90_A 15 LLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTG 94 (283)
T ss_dssp TTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHhHHhhhHHHHHHHHHHHHHHHHhhh-c
Q 023476 82 LRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVITNIIGLVAVLLANYI-D 156 (281)
Q Consensus 82 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~~-~ 156 (281)
++++++|++. ...+++++++.++.++|.+++++.+| .+|+++++++.|+++|+++| +++++++++.++ |
T Consensus 95 i~~l~~~~~~-----~~~~~~l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s-~~vli~~~~~~~g~ 168 (283)
T 3h90_A 95 IQHLISPTPM-----TDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMN-GAILLALGLSWYGW 168 (283)
T ss_dssp HHTSSSSCCC-----CCCCCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCC-SCSCSSSCSCSTTS
T ss_pred HHHHcCCCCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCc
Confidence 9999998762 22345667788888899988888654 58999999999999999997 666666555555 6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCC
Q 023476 157 DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS 236 (281)
Q Consensus 157 ~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~ 236 (281)
+|+||++++++++++++.+++++|++.+.|+|++||++..+++++.+++ .|||.++||+|+|+.|+++++++|++++++
T Consensus 169 ~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~i~~-~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~ 247 (283)
T 3h90_A 169 HRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS-WPGVSGAHDLRTRQSGPTRFIQIHLEMEDS 247 (283)
T ss_dssp CCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-SSSCSEEEEEEEEEETTEEEEEEEEECCTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-CCCcccceeeEEEEECCcEEEEEEEEeCCC
Confidence 8999999999999999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCC
Q 023476 237 MPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYT 271 (281)
Q Consensus 237 ~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~ 271 (281)
++++|+|++++++++.+++..+..++|||+||+..
T Consensus 248 ~~~~~~~~i~~~i~~~l~~~~~~~~v~ih~ep~~~ 282 (283)
T 3h90_A 248 LPLVQAHMVADQVEQAILRRFPGSDVIIHQDPCSV 282 (283)
T ss_dssp CBHHHHHHHHHHHHHHHHHHSTTCEEEEEEECSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 99999999999999999753344799999999864
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.65 E-value=1.1e-15 Score=110.48 Aligned_cols=84 Identities=20% Similarity=0.395 Sum_probs=73.3
Q ss_pred HhhCCCCCHHHHHHHHHHHhhcC--CCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc-CCCcee
Q 023476 185 SLVGRSAAPEYLQKLTYLCWNHH--KSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIER 261 (281)
Q Consensus 185 ~Ll~~~~~~~~~~~i~~~i~~~~--~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~-~~~i~~ 261 (281)
.|||.+|+++..++|++.+.+ . |||.++|++|+|+.|+.+++++|+++++++++.+++++.+++++.|++ ++. .+
T Consensus 1 ~Lld~~~~~~~~~~I~~~l~~-~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~-~~ 78 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQE-RIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPG-LQ 78 (94)
T ss_dssp -----CCCHHHHHHHHHHHHH-HHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTT-EE
T ss_pred CCcCCCCCHHHHHHHHHHHHh-cCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCC-CE
Confidence 478988999999999999987 8 999999999999999999999999999999999999999999999975 554 59
Q ss_pred EEEEeeccC
Q 023476 262 AFVHLDYEY 270 (281)
Q Consensus 262 v~i~iep~~ 270 (281)
+|||+||+.
T Consensus 79 vtIh~ep~~ 87 (94)
T 3byp_A 79 ATIHVEPEG 87 (94)
T ss_dssp EEEEEEECC
T ss_pred EEEEeCCCC
Confidence 999999964
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.57 E-value=1e-14 Score=107.75 Aligned_cols=84 Identities=18% Similarity=0.326 Sum_probs=74.3
Q ss_pred hCCCCCHH--HHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc-CCCceeEE
Q 023476 187 VGRSAAPE--YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAF 263 (281)
Q Consensus 187 l~~~~~~~--~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~-~~~i~~v~ 263 (281)
||.+|+++ ..++|++.+.+ .|||.+++++|+|+.|+.+++++||++++++++.+++++.+++++.|++ ++.+.++|
T Consensus 1 md~~~~~~~~~~~~I~~~l~~-~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vt 79 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVLER-FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVT 79 (107)
T ss_dssp ---CCHHHHHHHHHHHHHHTT-CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCCCCCccHHHHHHHHHHHHc-CCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 56678888 99999999987 8999999999999999999999999999999999999999999999974 66689999
Q ss_pred EEeeccCC
Q 023476 264 VHLDYEYT 271 (281)
Q Consensus 264 i~iep~~~ 271 (281)
||+||...
T Consensus 80 IhvEp~~~ 87 (107)
T 2zzt_A 80 IHVEPLGN 87 (107)
T ss_dssp EEEEETTC
T ss_pred EEEecCCC
Confidence 99999864
No 5
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=96.67 E-value=0.00056 Score=59.33 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=61.5
Q ss_pred hcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 023476 13 KSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNED 90 (281)
Q Consensus 13 ~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~esi~~l~~~~~ 90 (281)
-.+|.++.+|+.|...|+++++..+.+...+. ||+.-++++++++.+++++..++.++++++..|++..+
T Consensus 143 ~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~--------~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~ 212 (306)
T 3j1z_P 143 ATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ--------YGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDREL 212 (306)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC--------SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH--------hCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 36899999999999999999988777654432 47778999999999999999999999999999998776
No 6
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=96.48 E-value=0.00078 Score=57.72 Aligned_cols=70 Identities=17% Similarity=0.093 Sum_probs=60.8
Q ss_pred hcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 023476 13 KSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNED 90 (281)
Q Consensus 13 ~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~esi~~l~~~~~ 90 (281)
-.+|.++.+|+.|...|+++++..+.+...+ .+|+..++++.+++.+++++..++.++.+++..|++..+
T Consensus 134 ~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~ 203 (283)
T 3h90_A 134 RTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRAL 203 (283)
T ss_dssp HSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999998776665331 237778999999999999999999999999999998766
No 7
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=88.22 E-value=2.9 Score=32.25 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=60.1
Q ss_pred HHHHHHHhhcC-CCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHh--cCCCc-eeEEEEeeccCCC
Q 023476 197 QKLTYLCWNHH-KSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE--LLPEI-ERAFVHLDYEYTH 272 (281)
Q Consensus 197 ~~i~~~i~~~~-~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~--~~~~i-~~v~i~iep~~~~ 272 (281)
+++++.+...+ .| .++.++.+.+.|+...+.+.|.-+..+++++-.++.+.+...|. ....+ ..-++++-..+-+
T Consensus 12 ~~v~~li~p~~~~g-~eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD~~~~d~i~~~Y~LEVSSPGld 90 (164)
T 1ib8_A 12 ELVREVVEPVIEAP-FELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLDTIKPDPFPEQYFLEITSPGLE 90 (164)
T ss_dssp HHHHHHHHHHHCSS-SEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTTTCCSCCCCSCEEEEEECCSSS
T ss_pred HHHHHHHHHHHcCC-cEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccccCCCCCeEEEEeCCCCC
Confidence 34444443322 24 56789999999999999999988888999999999999999987 42222 3456777777766
Q ss_pred CCcccccCC
Q 023476 273 RPEHAQAHY 281 (281)
Q Consensus 273 ~~~~~~~~~ 281 (281)
.|=.++.||
T Consensus 91 RpL~~~~df 99 (164)
T 1ib8_A 91 RPLKTKDAV 99 (164)
T ss_dssp SCCSSHHHH
T ss_pred CCCCCHHHH
Confidence 666555554
No 8
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=81.28 E-value=8.5 Score=26.90 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=42.4
Q ss_pred HHHHHHHHHhh-cCCCc-ce------eeeEEEEEecCeEEEEEEEEcC-CCCCHHHHHHHHHHHHHHHhcCCCceeEEEE
Q 023476 195 YLQKLTYLCWN-HHKSI-RH------IDTVRAYTFGSHYFVEVDIVLP-ASMPLQEAHDIGESLQEKLELLPEIERAFVH 265 (281)
Q Consensus 195 ~~~~i~~~i~~-~~~~v-~~------i~~~~~~~~g~~~~v~~~i~v~-~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~ 265 (281)
..++|++.+++ ..|+. .+ ++++.+. |.. +.+.+.++ +.++. .+.+++++++.+++.+++.++.++
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~--~~~--V~v~l~lt~~~cp~--~~~l~~~i~~al~~l~gv~~V~V~ 80 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVE--PPR--AYVRMTLTTPGCPL--HDSLGEAVRQALSRLPGVEEVEVE 80 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEE--TTE--EEEEECCSSSSCCS--SCHHHHHHHHHHHTSTTCCEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEE--CCE--EEEEEEECCCCCcH--HHHHHHHHHHHHHhCCCceeEEEE
Confidence 44567777765 12331 12 2333331 333 44444442 33454 468899999999988999988888
Q ss_pred eeccCC
Q 023476 266 LDYEYT 271 (281)
Q Consensus 266 iep~~~ 271 (281)
+..+..
T Consensus 81 l~~~p~ 86 (103)
T 3cq1_A 81 VTFEPP 86 (103)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 776643
No 9
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=76.82 E-value=11 Score=26.09 Aligned_cols=66 Identities=5% Similarity=-0.029 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccC
Q 023476 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 270 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~ 270 (281)
.|+..+++.+.+.+ +||+ +++ ... +....+-+.++-+ +. +++.+.+ +.+++.|||..+........
T Consensus 15 ~p~~~~~V~~~L~~-ipgv-Ei~---~~~-~~~GkiVV~iEa~---~~---~~l~~~i-~~I~~i~GVlst~lvy~~~e 80 (95)
T 2jsx_A 15 KSERISDISTQLNA-FPGC-EVA---VSD-APSGQLIVVVEAE---DS---ETLIQTI-ESVRNVEGVLAVSLVYHQQE 80 (95)
T ss_dssp CTTSHHHHHHHHTT-STTE-EEE---EEE-TTTTEEEEEEEES---SH---HHHHHHH-HHHTTSTTEEEEEESSCCCC
T ss_pred CCCCHHHHHHHHHC-CCCe-EEE---Eec-CCCCCEEEEEEeC---CH---HHHHHHH-HHHhcCCCccEEeEEEEEec
Confidence 45668899999987 8997 342 211 2222333444444 43 4455666 77899999998888766544
No 10
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=76.72 E-value=19 Score=26.11 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhcCCCcceeeeEEEE--E-----ec--Ce--EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCC----
Q 023476 193 PEYLQKLTYLCWNHHKSIRHIDTVRAY--T-----FG--SH--YFVEVDIVLPASMPLQEAHDIGESLQEKLELLP---- 257 (281)
Q Consensus 193 ~~~~~~i~~~i~~~~~~v~~i~~~~~~--~-----~g--~~--~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~---- 257 (281)
+++.+.+.+.+.+ .+.....++|.| + .| +. -++.++|.+-++-|.++=.++.+.+.+.+++.-
T Consensus 18 ~~L~~~lh~~l~~--~~~fp~~~ik~Ra~~~~~~~vg~~~~~~~fvhi~i~i~~GRs~eqK~~L~~~v~~~l~~~l~~~~ 95 (125)
T 1otg_A 18 PGLFAKVNPTLAA--TGIFPLAGIRSRVHWVDTWQMADGQHDYAFVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALM 95 (125)
T ss_dssp HHHHHHHHHHHHT--TSSSCGGGCEEEEEEESSEEETTSCSCEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHH--cCCCCCcCceEeeEEcccEEEcCCCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4677888888866 233334444333 2 23 11 367777777677798888888999988887532
Q ss_pred --CceeEEEEeeccCCC-CCccc
Q 023476 258 --EIERAFVHLDYEYTH-RPEHA 277 (281)
Q Consensus 258 --~i~~v~i~iep~~~~-~~~~~ 277 (281)
+...++|+++.-..+ +....
T Consensus 96 ~~~~~~vsv~i~E~~~~~~~~~~ 118 (125)
T 1otg_A 96 ESRLLALSFEIEELHPTLNFKQN 118 (125)
T ss_dssp TTSEEEEEEEEEECCSSSEEEEE
T ss_pred CCCceEEEEEEEEcCCccCHHHh
Confidence 346788888877665 44443
No 11
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=73.55 E-value=16 Score=25.72 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=32.4
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHH-hcCCCceeEEEEeeccCCCCC
Q 023476 225 YFVEVDIVLPASMPLQEAHDIGESLQEKL-ELLPEIERAFVHLDYEYTHRP 274 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~~l-~~~~~i~~v~i~iep~~~~~~ 274 (281)
..+++.+..+ .++. ...+++++++.+ ++.+++.++.|++..+..=++
T Consensus 46 V~V~ltlt~p-~cp~--~~~i~~~i~~al~~~l~Gv~~V~V~l~~~p~W~~ 93 (108)
T 3lno_A 46 AVITMTMTSI-GCPM--AGQIVSDVKKVLSTNVPEVNEIEVNVVWNPPWSK 93 (108)
T ss_dssp EEEEECCSCT-TCTT--HHHHHHHHHHHHHHHCTTCCCEEEEECCSSCCCG
T ss_pred EEEEEEECCC-CCcH--HHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCh
Confidence 4444444433 3554 468999999999 788999988888876654333
No 12
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=72.18 E-value=19 Score=25.06 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=30.5
Q ss_pred EEEEEEc-CCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCC
Q 023476 227 VEVDIVL-PASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYT 271 (281)
Q Consensus 227 v~~~i~v-~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~ 271 (281)
+.+.+.+ .+.++. .+.+++++++.+++.+++.++.+++..+..
T Consensus 44 V~v~l~lt~~~cp~--~~~l~~~i~~al~~l~gv~~v~V~l~~~p~ 87 (103)
T 1uwd_A 44 VKVLMTMTTPMCPL--AGMILSDAEEAIKKIEGVNNVEVELTFDPP 87 (103)
T ss_dssp EEEEECCSSSCCSS--HHHHHHHHHHHHHTSSSCCEEEEEECCSSC
T ss_pred EEEEEEECCCCCcH--HHHHHHHHHHHHHhCCCcceEEEEEecCCC
Confidence 3444444 233454 578999999999988999988888776653
No 13
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=69.86 E-value=24 Score=24.36 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=39.7
Q ss_pred HHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCC--CCHHHHHHHHHHHHHHHhcCCCc
Q 023476 197 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS--MPLQEAHDIGESLQEKLELLPEI 259 (281)
Q Consensus 197 ~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~--~~~~~~~~i~~~i~~~l~~~~~i 259 (281)
.+|++.+.+ +|+|.+..-+-+...+..-...+.++..+. .+..+..++.+++++.+++..++
T Consensus 17 ~eIE~vl~~-~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 17 IQIETILLQ-FKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp HHHHHHHHT-CTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHh-CCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 456677766 799876655555555555555555655444 34566778888888888653343
No 14
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=62.29 E-value=33 Score=24.34 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCce
Q 023476 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 260 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~ 260 (281)
.++..++|.+++.++.||-..+ ..|--+-|+..-+.+.+.+. +.++. +.+-+.|++.++|.
T Consensus 46 ~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~---S~eQv----~aiY~~L~~~~~Vk 106 (109)
T 1rwu_A 46 LPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT---HIEQV----ETLYEELGKIDIVR 106 (109)
T ss_dssp CTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS---SHHHH----HHHHHHHSCSSSCE
T ss_pred cHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC---CHHHH----HHHHHHHhcCCCEE
Confidence 4568888999998877742222 33333445556666666665 44443 44566677767765
No 15
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=61.18 E-value=30 Score=25.95 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhcCCCcceeeeEEEE-------EecC----eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc-CCC--
Q 023476 193 PEYLQKLTYLCWNHHKSIRHIDTVRAY-------TFGS----HYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPE-- 258 (281)
Q Consensus 193 ~~~~~~i~~~i~~~~~~v~~i~~~~~~-------~~g~----~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~-~~~-- 258 (281)
+++.+.|.+.+.+ .+.....++|+| ..|. .-++.+.+.+-++-|.++=.++.+.|.+.+++ .+.
T Consensus 40 ~~l~~~vh~al~~--~g~fp~~diK~Ra~~~~~y~vg~~~~~~~FVhV~i~ll~GRt~EqK~~L~e~v~~al~~~l~~~~ 117 (146)
T 3e6q_A 40 GELLEQANAALFA--SGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDAATRQALGESLCEVLAGAVAGGG 117 (146)
T ss_dssp HHHHHHHHHHHHH--TTSSCGGGCEEEEEEESSEEESSSSCCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHEEECS
T ss_pred HHHHHHHHHHHHh--cCCCCccCeeEEEEEccceEEcCCCCCccEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4688889988876 333344444443 3332 24677777676777888888888998888864 222
Q ss_pred --ceeEEEEeeccCCC
Q 023476 259 --IERAFVHLDYEYTH 272 (281)
Q Consensus 259 --i~~v~i~iep~~~~ 272 (281)
...++++++.-.++
T Consensus 118 ~~~~~lsVeI~E~~~~ 133 (146)
T 3e6q_A 118 EEGVQVSVEVREMERA 133 (146)
T ss_dssp SSCEEEEEEEEEECGG
T ss_pred CCceEEEEEEEECCcc
Confidence 23677777765543
No 16
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=60.54 E-value=39 Score=23.38 Aligned_cols=69 Identities=12% Similarity=0.042 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCC---HHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023476 197 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMP---LQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 197 ~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~---~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
.+|++.+.+ +|++....-+-+...+..-.+.+.+++ ++.. ..+..++.+.+++.+++..++. ..|++-+
T Consensus 17 ~eIE~~l~~-~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~~~-~~v~~v~ 88 (109)
T 3gxs_A 17 IQIETILLQ-FKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEILVT-PRVKLVP 88 (109)
T ss_dssp HHHHHHHHT-CTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHSSC-CEEEEEC
T ss_pred HHHHHHHHh-CCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhCCc-eEEEEEC
Confidence 567777776 799875555555444444445566666 3321 3456778888888886422433 2444444
No 17
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=59.19 E-value=41 Score=23.17 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEe
Q 023476 196 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 266 (281)
Q Consensus 196 ~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~i 266 (281)
=+.|++.+.+ -|+.++.++|+ |+.+.+++. .+ +.+++.+..+++.+.|-..|-+.+.++++
T Consensus 33 G~aV~~aL~~--LG~~~V~~VR~---GK~~el~~~--~~---~~~~a~~~v~~mc~kLLaNpVIE~y~ie~ 93 (94)
T 1vq3_A 33 GETIERVLRE--EKGLPVKKLRL---GKSIHLEVE--AE---NKEKAYEIVKKACEELLVNPVVEEYEVRE 93 (94)
T ss_dssp HHHHHHHHHH--TTCCCEEEEEE---EEEEEEEEE--CS---SHHHHHHHHHHHHHHTTSCTTTEEEEEEE
T ss_pred HHHHHHHHHH--cCCCccceeee---eeEEEEEec--CC---CHHHHHHHHHHHHHHHcCCCcceEEEEEe
Confidence 3456666655 45556666666 555554443 32 55677778888888887668888776653
No 18
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=59.11 E-value=36 Score=22.81 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccC
Q 023476 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 270 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~ 270 (281)
||+- +.+++.+.+ -|+ ++.++|. |+.+.+++ +.+ +.+++.+..+++.+.|-..|-+.+..+.+++-.
T Consensus 17 DpqG-~av~~al~~--LG~-~v~~VR~---gK~~~l~~----~~~-~~~~a~~~v~~~~~~LLaNpVie~~~~~~~~~~ 83 (85)
T 1gtd_A 17 NPEA-ATIERALAL--LGY-EVEDTDT---TDVITFTM----DED-SLEAVEREVEDMCQRLLCNPVIHDYDVSINEMS 83 (85)
T ss_dssp CHHH-HHHHHHHHH--HTC-CCEEEEE---EEEEEEEE----CCS-CHHHHHHHHHHHHHHTTCCTTTEEEEEEEEEC-
T ss_pred CcHH-HHHHHHHHH--cCC-ChheEEE---EEEEEEEe----cCC-CHHHHHHHHHHHHHHhcCCCcceEEEEEEEEcC
Confidence 4443 356666644 354 6666665 44444433 332 556677778888888866688888888887543
No 19
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=52.88 E-value=20 Score=28.35 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeecc
Q 023476 194 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 269 (281)
Q Consensus 194 ~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~ 269 (281)
+....|+..|.. .| +.|+-++-.+..+.|.+ . .+.++..++.+|.+-+.+...-- .+|.|+++|.
T Consensus 132 ekE~~IE~LLKA--KG---F~DAVV~i~dd~V~VVV--k-a~~Ls~~eaaqI~DIV~r~tgv~---~dV~Vqf~p~ 196 (197)
T 3tuf_A 132 GTEKQLETLIKT--QG---YEDALVNAEGDKINITV--K-SDKHSKSKATAIIDLVAKEIKTM---KDVAVTFEPS 196 (197)
T ss_dssp HHHHHHHHHHHH--TT---CSCEEEECSSSEEEEEE--E-CSCCCHHHHHHHHHTSCHHHHTT---SEEEEEEECC
T ss_pred HHHHHHHHHHHh--CC---CCceEEEecCCEEEEEE--e-CCCCCHHHHHHHHHHHHHhhCCC---CceEEEeeeC
Confidence 445666777765 34 66777776666544443 3 46789889999888887777421 3589999984
No 20
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=51.02 E-value=19 Score=26.17 Aligned_cols=54 Identities=15% Similarity=0.040 Sum_probs=40.8
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC-CCceeEEEEeeccCCCCCcccccCC
Q 023476 225 YFVEVDIVLPASMPLQEAHDIGESLQEKLELL-PEIERAFVHLDYEYTHRPEHAQAHY 281 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~-~~i~~v~i~iep~~~~~~~~~~~~~ 281 (281)
-++++..- + -+.++-+++++.|.+.+.+. .+..+|.|.+..-..++.+..+.||
T Consensus 68 P~VeV~~f--g-Rt~EqK~~la~~IT~av~~~~~~~e~V~Vif~el~~~~y~~gG~~~ 122 (122)
T 1u9d_A 68 PMVEVLWF--G-REQQTQDQIAQVITDQIRQLLGADSHLAVVFIPLQRTAYYLDGQHF 122 (122)
T ss_dssp CEEEEEES--C-CCHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEECCGGGCEETTEEC
T ss_pred CEEEEEEc--C-CCHHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCHHHeeeCCEEC
Confidence 34555555 3 48888889999999999642 3334788888888888888888887
No 21
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=49.64 E-value=53 Score=21.59 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=45.8
Q ss_pred HhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc
Q 023476 185 SLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 255 (281)
Q Consensus 185 ~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~ 255 (281)
.++....+++..+++.+.++- .+.|.. .+-+ +......=++-..++|+++-++.....++++..|.+
T Consensus 8 vl~~~~a~~~~i~Eler~~ri-ne~VlR--~l~v-r~d~~r~YE~m~Il~P~l~ee~~~~~vek~~~~i~~ 74 (77)
T 3zzp_A 8 TWYQVEMPEDRVNDLARELRI-RDNVRR--VMVV-ASTTPGRYEVNIVLNPNLDQSQLQNEKEIIQRALEN 74 (77)
T ss_dssp EEEEEECCHHHHHHHHHHHHT-STTEEE--EEEE-ECSSTTEEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHhHHHHHHHHhCC-CHHHHH--HHHH-hccCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 445555688899999999964 456543 3333 333332234566678888988899999999998865
No 22
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=48.23 E-value=65 Score=22.21 Aligned_cols=68 Identities=19% Similarity=0.107 Sum_probs=50.0
Q ss_pred HhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC
Q 023476 185 SLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL 256 (281)
Q Consensus 185 ~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~ 256 (281)
.+++...|++..+++++.++= .+.|..+--+++-. ...=+.-+.++|+.+-++..++.+++++.+.+.
T Consensus 8 ~~~~~~a~~~~v~eler~~r~-~e~vlR~l~v~~e~---Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~ 75 (96)
T 2kjw_A 8 LWYQVEMPEDRVNDLARELRI-RDNVRRVMVVASTT---PGRYEVNIVLNPNLDQSQLALEKEIIQRALENY 75 (96)
T ss_dssp EEECCCCCHHHHHHHHHHHHH-CTTCSEEEEEECSS---SSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecChhHHHHHHHHhcc-chhhhhhhheehhh---hhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhC
Confidence 456667899999999999974 56776555555432 222345556889999999999999999999764
No 23
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=48.20 E-value=78 Score=23.12 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEe
Q 023476 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 266 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~i 266 (281)
.+++..+++.+.+.+ .|+|.+++.+ .|+. +.+.++.. + +.++.+ +-+.+.+.+.+++.++...+
T Consensus 77 ~~~~~~~~~~~~l~~-~peV~~~~~v----tG~~d~~~~v~~~-~---d~~~l~---~~~~~~l~~~~gV~~~~t~i 141 (151)
T 2dbb_A 77 KVPSDADKVISEISD-IEYVKSVEKG----VGRYNIIVRLLLP-K---DIKDAE---NLISEFLQRIKNAENVEVIL 141 (151)
T ss_dssp SSHHHHHHHHHHHTT-CTTEEEEEEE----ESSCSEEEEEEEE-S---SHHHHH---HHHHHHHHTCCSEEEEEEEE
T ss_pred eCCCCHHHHHHHHHc-CCCeEEEeEe----cCCCCEEEEEEEc-C---CHHHHH---HHHHHHhhcCCCeeEEEEEE
Confidence 456667788888876 8998777643 4654 55554441 2 444433 34446677778887665544
No 24
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=46.53 E-value=36 Score=21.72 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=19.3
Q ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 023476 49 YQYPIGKKRMQPLGILVFASVMATLGLQIILE 80 (281)
Q Consensus 49 ~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~e 80 (281)
..|.|-|..+ .+++|+.+.+++.+|+.++..
T Consensus 8 dpF~YDY~tL-RigGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 8 SPFYYDWESL-QLGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp SGGGGGGHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccchHHh-eecchhhHHHHHHHHHHHHHc
Confidence 3455555554 346777777777777766654
No 25
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=45.85 E-value=26 Score=21.46 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=30.5
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHHhcCC--CceeEEEEeeccCCCCCc
Q 023476 230 DIVLPASMPLQEAHDIGESLQEKLELLP--EIERAFVHLDYEYTHRPE 275 (281)
Q Consensus 230 ~i~v~~~~~~~~~~~i~~~i~~~l~~~~--~i~~v~i~iep~~~~~~~ 275 (281)
+|.+.+..+.++-.++.+.+.+.+.+.. ...++.|.++....++..
T Consensus 5 ~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~~~w~ 52 (64)
T 3abf_A 5 KVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRRDQWA 52 (64)
T ss_dssp EEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECGGGEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHee
Confidence 3444445687877888888888886532 335788888877655443
No 26
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=44.64 E-value=63 Score=21.41 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023476 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
||+- +.+++.+.+ -|+.++.++|. |..+.+++ +.+ +.+++.+..+.+.+.|-..|-+.+..+.+++
T Consensus 16 DpqG-~av~~al~~--lG~~~v~~Vr~---gk~~~l~~----~~~-~~~~a~~~v~~~~~~LLaNpVie~y~~~~~~ 81 (83)
T 2yx5_A 16 NPEG-RTIQRALNF--LGFNNVKEVQT---YKMIDIIM----EGE-NEEKVKEEVEEMCKKLLANPVIHDYEIKVEK 81 (83)
T ss_dssp CHHH-HHHHHHHHH--TTCTTCCCCCC---CEEEEEEE----C-C-CHHHHHHHHHHHHHHTTCCTTTEEEEEEEEE
T ss_pred CcHH-HHHHHHHHH--cCCCChhhEEE---EEEEEEEe----cCC-CHHHHHHHHHHHHHHhccCCcceEEEEEEEE
Confidence 4443 356666654 34344445444 44444433 222 4566777778888877666888888887764
No 27
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=44.08 E-value=89 Score=23.76 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEE
Q 023476 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 264 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i 264 (281)
.|..+.+|...+.+ .| .++..+.+......-...+.+.++.+ .+..+++.+.+++.+++.+|.-
T Consensus 13 rpGvLarIt~lfs~--rg-~NI~Sl~v~~t~d~~~sriti~V~~d------~~~leqI~kqL~Kl~dV~~V~r 76 (164)
T 2f1f_A 13 ESGALSRVIGLFSQ--RG-YNIESLTVAPTDDPTLSRMTIQTVGD------EKVLEQIEKQLHKLVDVLRVSE 76 (164)
T ss_dssp CTTHHHHHHHHHHT--TT-CCCSEEEEEECSCSSEEEEEEEEESC------HHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCcHHHHHHHHHHH--CC-CCeeeceeeecCCCCEEEEEEEEecc------HHHHHHHHHHHcCCCCEEEEEE
Confidence 45789999999975 45 45777777654432233344444433 3466777788888788877643
No 28
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=41.83 E-value=29 Score=22.47 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=29.0
Q ss_pred eEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeecc
Q 023476 215 TVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 269 (281)
Q Consensus 215 ~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~ 269 (281)
.+++.+.|... +++|.+. +-+|..+-.+++++.+.+- +-.++.|.+..+
T Consensus 9 tikiqrdgqei--eidirvs---tgkeleralqelekalara-garnvqitisae 57 (96)
T 2jvf_A 9 TIKIQRDGQEI--EIDIRVS---TGKELERALQELEKALARA-GARNVQITISAE 57 (96)
T ss_dssp EEEEEETTEEE--EEEEECC---SSSHHHHHHHHHHHHHHHH-TCSEEEEEEECS
T ss_pred EEEEeeCCeEE--EEEEEEc---ccHHHHHHHHHHHHHHHhc-cccceEEEEEec
Confidence 45666666654 4555565 3346667778888888652 444455555444
No 29
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=38.63 E-value=66 Score=21.43 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=27.0
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHHHhc-CCCc-eeEEEE
Q 023476 226 FVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEI-ERAFVH 265 (281)
Q Consensus 226 ~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~-~~~i-~~v~i~ 265 (281)
.|++.+.-...++..-.+.+.+++.++|++ +|.. .+|.|.
T Consensus 2 rVEi~~dK~~~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr 43 (81)
T 1ghh_A 2 RIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVR 43 (81)
T ss_dssp EEEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEE
T ss_pred eEEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCceEEEe
Confidence 345555444567766788999999999975 7775 245553
No 30
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=36.50 E-value=47 Score=21.62 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=19.4
Q ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 023476 49 YQYPIGKKRMQPLGILVFASVMATLGLQIILE 80 (281)
Q Consensus 49 ~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~e 80 (281)
..|.|-|.++ .+++|+.+.++..+|+.++..
T Consensus 10 dpF~YDY~tL-RigGLifA~vLfi~GI~iilS 40 (74)
T 2zxe_G 10 ERFTYDYYRL-RVVGLIVAAVLCVIGIIILLA 40 (74)
T ss_dssp GGGCCCHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcccchHHh-eeccchhHHHHHHHHHHHHHc
Confidence 3455555554 456777777777777766543
No 31
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=36.38 E-value=31 Score=21.97 Aligned_cols=43 Identities=5% Similarity=0.049 Sum_probs=28.6
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCC
Q 023476 231 IVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHR 273 (281)
Q Consensus 231 i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~ 273 (281)
|.+.+..|.++-.++.+.+.+.+.+. ....+++|.++....++
T Consensus 6 I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~~~~ 50 (72)
T 3mb2_A 6 ITMLEGRSTEQKAELARALSAAAAAAFDVPLAEVRLIIQEVPPTH 50 (72)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGG
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHH
Confidence 33335578888888888888888642 12347788777765443
No 32
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=36.30 E-value=98 Score=22.61 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEe
Q 023476 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 266 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~i 266 (281)
..+++.+.+.+ .|+|.+++.+ .|+. +.+.++. + +.++ +.+-+.+.+.+.|++.++...+
T Consensus 81 ~~~~~~~~l~~-~peV~~~~~v----tG~~d~~~~v~~--~---d~~~---l~~~l~~~l~~~~gV~~~~t~i 140 (152)
T 2cg4_A 81 DYPSALAKLES-LDEVTEAYYT----TGHYSIFIKVMC--R---SIDA---LQHVLINKIQTIDEIQSTETLI 140 (152)
T ss_dssp GHHHHHHHHHT-CTTEEEEEEE----SSSCSEEEEEEE--S---CHHH---HHHHHHHTTTTSTTEEEEEEEE
T ss_pred CHHHHHHHHhC-CcCeEEEEEE----ecccCEEEEEEE--C---CHHH---HHHHHHHHhhcCCCeeEEEEEE
Confidence 46778888876 8998777643 4553 5555544 3 4444 4444556677788987665544
No 33
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=35.72 E-value=52 Score=20.43 Aligned_cols=47 Identities=11% Similarity=0.098 Sum_probs=32.6
Q ss_pred EEEEcCC---CCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCCc
Q 023476 229 VDIVLPA---SMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRPE 275 (281)
Q Consensus 229 ~~i~v~~---~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~~ 275 (281)
++|.+.+ ..|.++-.++.+.+.+.+.+. ....++.|.++....++..
T Consensus 3 i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~~w~ 54 (67)
T 3m21_A 3 INIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYG 54 (67)
T ss_dssp EEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEECCTTTEE
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeE
Confidence 3455554 678888889999998888642 2334788888877666554
No 34
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=34.84 E-value=1.1e+02 Score=21.05 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=34.5
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCCc
Q 023476 225 YFVEVDIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRPE 275 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~~ 275 (281)
-.+.++|..-+..+.++-.++.+.+.+.+++. ....++.|.++....+++.
T Consensus 55 ~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg 107 (113)
T 1hfo_A 55 PAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGDDVG 107 (113)
T ss_dssp SCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEE
T ss_pred CeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEECCHHHee
Confidence 34555565666678888788888888888642 2334788888877665544
No 35
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=34.52 E-value=1.1e+02 Score=21.09 Aligned_cols=51 Identities=6% Similarity=-0.057 Sum_probs=34.6
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCCc
Q 023476 225 YFVEVDIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRPE 275 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~~ 275 (281)
-.+.++|..-+..+.++-.++.+.+.+.+++. ....++.|.+.....+++.
T Consensus 56 ~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg 108 (115)
T 1uiz_A 56 PCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANVG 108 (115)
T ss_dssp SCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEE
T ss_pred CeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEECCHHHee
Confidence 34555665666678888788888888888642 2334788888877665544
No 36
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=34.19 E-value=45 Score=20.45 Aligned_cols=46 Identities=4% Similarity=-0.021 Sum_probs=30.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCCc
Q 023476 229 VDIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRPE 275 (281)
Q Consensus 229 ~~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~~ 275 (281)
++|.+ +..|.++-.++.+.+.+.+.+. ....+++|.++....++..
T Consensus 3 I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~~~w~ 50 (62)
T 3m20_A 3 LIVYG-PKLDVGKKREFVERLTSVAAEIYGMDRSAITILIHEPPAENVG 50 (62)
T ss_dssp EEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEECCCGGGEE
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCHHHeE
Confidence 34555 6678888888888888888542 1223677777776555443
No 37
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=33.90 E-value=65 Score=19.20 Aligned_cols=45 Identities=7% Similarity=0.071 Sum_probs=29.0
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCC
Q 023476 230 DIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRP 274 (281)
Q Consensus 230 ~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~ 274 (281)
+|.+.+..+.++-.++.+.+.+.+.+. .+-.++.+.+++...++.
T Consensus 7 ~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~~~~~ 53 (63)
T 2x4k_A 7 NVKLLEGRSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMKPNHY 53 (63)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGC
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHe
Confidence 334444557777788888888888542 233577887777655443
No 38
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=33.33 E-value=76 Score=20.55 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEee
Q 023476 196 LQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 267 (281)
Q Consensus 196 ~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~ie 267 (281)
.+++.+.+.+ .|+|.+++.+ .|+. +.+.+. ++ +.++.+ +-+.+.+.+.|++.++.-.+-
T Consensus 15 ~~~~~~~l~~-~peV~e~~~v----tG~~D~ll~v~--~~---d~~~l~---~~i~~~l~~~~gV~~~~T~iv 74 (83)
T 2cvi_A 15 EREVMEKLLA-MPEVKEAYVV----YGEYDLIVKVE--TD---TLKDLD---QFITEKIRKMPEIQMTSTMIA 74 (83)
T ss_dssp HHHHHHHHHT-STTEEEEEEC----BSSCSEEEEEE--ES---SHHHHH---HHHHTTGGGCTTEEEEEEEEE
T ss_pred HHHHHHHHhC-CCCeeEEEEE----cccCCEEEEEE--EC---CHHHHH---HHHHHHhccCCCEeEEEEEEE
Confidence 4678888876 8998766432 2543 555444 43 445443 344556778899887655544
No 39
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=33.30 E-value=1.2e+02 Score=21.12 Aligned_cols=51 Identities=0% Similarity=-0.110 Sum_probs=34.3
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCCc
Q 023476 225 YFVEVDIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRPE 275 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~~ 275 (281)
-.+.++|..-+..+.++-.++.+.+.+.+.+. ....++.|.++....+++.
T Consensus 56 ~~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg 108 (119)
T 2os5_A 56 PVAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVIITYFDLQPIHVG 108 (119)
T ss_dssp SCEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGCE
T ss_pred CeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEECCHHHee
Confidence 33455555666678888788888888888642 2334788888877665554
No 40
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=32.92 E-value=96 Score=23.64 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEE
Q 023476 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 264 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i 264 (281)
.|..+.+|...+.+ .| .++..+.+......-...+.+.++.+ ++..+++.+.+++.+++.+|.-
T Consensus 14 rpGvL~rI~~lfs~--rg-~NI~Sl~v~~t~d~g~sritivV~~d------~~~leql~kQL~Kl~dV~~V~~ 77 (165)
T 2pc6_A 14 EAGALSRVAGLFSA--RG-YNIESLSVAPTEDPTLSRMTLVTNGP------DEIVEQITKQLNKLIEVVKLID 77 (165)
T ss_dssp STTHHHHHHHHHHH--HT-CCCCEEEEEECSSTTEEEEEEEEEEC------HHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCcHHHHHHHHHHH--CC-CcEEEEEEEecCCCCEEEEEEEEecc------HHHHHHHHHHhcCCCCEEEEEE
Confidence 45788999998876 34 44666666544322233344444432 4566777888888888877753
No 41
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=32.30 E-value=99 Score=19.71 Aligned_cols=60 Identities=8% Similarity=0.182 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEee
Q 023476 196 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 267 (281)
Q Consensus 196 ~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~ie 267 (281)
.+++.+.+.+ .|+|.+++.+ .|+. -.-+++.++ +.++.+ +-+.+.+.+.||+.++.-.+-
T Consensus 15 ~~~~~~~l~~-~peV~~~~~v----tG~~-d~l~~v~~~---d~~~l~---~~~~~~l~~~~gV~~~~t~iv 74 (83)
T 2zbc_A 15 EDEVFERLKS-MSEVTEVHVV----YGVY-DIVVKVEAD---SMDKLK---DFVTNTIRKLPKVRSTLTMII 74 (83)
T ss_dssp HHHHHHHHTT-CTTEEEEEEC----SSSC-SEEEEEECS---SHHHHH---HHHHHTGGGSTTEEEEEEEEC
T ss_pred HHHHHHHHhC-CCCeEEEEEE----eccC-CEEEEEEEC---CHHHHH---HHHHHHhcCCCCEeEEEEEEE
Confidence 4678888876 7887766432 2443 233445544 444443 344556778899887765554
No 42
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=32.25 E-value=1.2e+02 Score=20.63 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCC-C-CHHHHHHHHHHHHHHHhcCCCceeEEEE
Q 023476 194 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPAS-M-PLQEAHDIGESLQEKLELLPEIERAFVH 265 (281)
Q Consensus 194 ~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~-~-~~~~~~~i~~~i~~~l~~~~~i~~v~i~ 265 (281)
++.++|++.+ +.-......+..-.|=. ..+.+.+.++++ . +. +.+++.++++.+++++.|.
T Consensus 23 ~L~~~vk~~~----~~gl~w~~~k~~pIafGlk~L~i~~vveD~~~~~t-------D~lee~i~~~e~VqSvdV~ 86 (91)
T 2yy3_A 23 ELEEKLKKVI----PEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSF-------DEVAEKFEEVENVESAEVE 86 (91)
T ss_dssp HHHHHHHHHS----CTTCEEEEEEEEECTTSCEEEEEEEEECSSTTCCH-------HHHHHHHHHSTTEEEEEEE
T ss_pred HHHHHHHHhc----cCCcEEeeeeEEEEEcceeeEEEEEEEECCCcccc-------HHHHHHHhcCCCceEEEEE
Confidence 3444455433 33345667777777766 678888888654 3 44 3445556666678877664
No 43
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=32.14 E-value=39 Score=20.30 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=29.2
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCC
Q 023476 230 DIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRP 274 (281)
Q Consensus 230 ~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~ 274 (281)
+|.+.+..|.++-.++.+.+.+.+.+. ....++.|.+.....++.
T Consensus 4 ~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e~~~~~w 50 (61)
T 2opa_A 4 TVKMLEGRTDEQKRNLVEKVTEAVKETTGASEEKIVVFIEEMRKDHY 50 (61)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGC
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHHHe
Confidence 444444558888888888888888642 233467777776655443
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=31.13 E-value=1.5e+02 Score=25.66 Aligned_cols=59 Identities=10% Similarity=0.057 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCC---HHHHHHHHHHHHHHHhcC
Q 023476 196 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMP---LQEAHDIGESLQEKLELL 256 (281)
Q Consensus 196 ~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~---~~~~~~i~~~i~~~l~~~ 256 (281)
..+|++.+.+ .|+|.+..-+-....+..-.+.+.++.+ +.+ ..+..++++.+++.+.++
T Consensus 343 p~eiE~~l~~-~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~ 404 (436)
T 3qov_A 343 PMQVEKILVQ-FPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDE 404 (436)
T ss_dssp HHHHHHHHTT-CTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHh
Confidence 5678888876 7998765444444444444555666655 332 234567888888888643
No 45
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=30.84 E-value=42 Score=20.73 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=30.2
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCCc
Q 023476 230 DIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRPE 275 (281)
Q Consensus 230 ~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~~ 275 (281)
+|.+.++.|.++-.++.+.+.+.+.+. ....+++|.++....++..
T Consensus 4 ~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~~~~w~ 51 (65)
T 3ry0_A 4 RVTLLEGRSPQEVAALGEALTAAAHETLGTPVEAVRVIVEETPPERWF 51 (65)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCE
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHee
Confidence 344445678888889999998888642 2234677777766555443
No 46
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=30.47 E-value=31 Score=22.40 Aligned_cols=45 Identities=7% Similarity=-0.048 Sum_probs=29.1
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCC
Q 023476 230 DIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRP 274 (281)
Q Consensus 230 ~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~ 274 (281)
+|.+.++.|.++-.++.+.+.+.+.+. ....+++|.++....++.
T Consensus 5 ~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~E~~~~~w 51 (76)
T 3ej9_A 5 SCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFVIREGSGINF 51 (76)
T ss_dssp EEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGE
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHe
Confidence 344445578888889999999888642 133467777766654433
No 47
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=30.16 E-value=1.5e+02 Score=21.59 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023476 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
+++..+++.+.+.+ .|+|..++.. .|+. +.+.++. + +.++.+++ + +.+.+.+++.++...+--
T Consensus 76 ~~~~~~~~~~~l~~-~p~V~~~~~~----tG~~d~~~~v~~--~---d~~~l~~~---~-~~l~~~~gV~~~~t~ivl 139 (151)
T 2cyy_A 76 KAGKYSEVASNLAK-YPEIVEVYET----TGDYDMVVKIRT--K---NSEELNNF---L-DLIGSIPGVEGTHTMIVL 139 (151)
T ss_dssp CTTCHHHHHHHHHT-CTTEEEEEEC----SSSSSEEEEEEE--S---SHHHHHHH---H-HHHHTSTTEEEEEEEECC
T ss_pred CcccHHHHHHHHhc-CCCeeEeeEe----cCCCCEEEEEEE--C---CHHHHHHH---H-HHHhCCCCEeEEEEEEEE
Confidence 34556888888876 8998766542 3553 5555444 3 55554443 4 567777898766655543
No 48
>3eb7_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
Probab=30.04 E-value=2.3e+02 Score=26.18 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 023476 138 DVITNIIGLVAVLLANYIDDWMDPVGAIILALYTI-----RTWSMTVLENVNSLVGRSAAPEYLQKLTYLC 203 (281)
Q Consensus 138 D~~~s~~~v~~~~~~~~~~~~~D~i~s~~i~~~i~-----~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i 203 (281)
|++.+++++++.+++....|.+-++++++-.++=+ ...|..+++.+..|++...++...++....+
T Consensus 5 ~~v~~~i~i~~~ilg~~~vP~vg~~~~~~s~l~~~lwp~~~~~w~~~~~~ve~lIdq~I~~~~~~~a~~~l 75 (589)
T 3eb7_A 5 DAVKTAISLVGTILGKLGVPLVGPIVSLYSTLIDVLWPGGKSQWEIFMEQVEALINQKIAEYARAKALAEL 75 (589)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554455555544433345555555443222111 1347888899999999888887655555544
No 49
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=29.31 E-value=40 Score=20.29 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=28.5
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCC
Q 023476 230 DIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHR 273 (281)
Q Consensus 230 ~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~ 273 (281)
+|.+.+..|.++-.++.+.+.+.+.+. ....++.|.++....++
T Consensus 4 ~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~~~~ 49 (62)
T 1otf_A 4 QLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNH 49 (62)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGG
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCHHH
Confidence 444444568888888888888888642 23346777776655443
No 50
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=28.91 E-value=1.6e+02 Score=21.08 Aligned_cols=76 Identities=11% Similarity=0.021 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023476 190 SAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 190 ~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
-.|..+++++-..+.+ ..|=.++.++++-+.-.. -++.+.+.-+ +.+..++|.+++++.=...+...++.+..-|
T Consensus 12 LiDSgil~~~LD~I~d-~GG~F~I~~f~vG~~k~d~SyA~l~V~a~---d~e~L~~Il~~L~~lGA~~~~~~da~l~~a~ 87 (118)
T 3mgj_A 12 IIDSLILPKVFDKILD-MGGDYKVLEFEIGKRKTDPSYAKILVIGR---DERHVDEILNELRDLGAEIPEIEEVELQPAE 87 (118)
T ss_dssp CTTSSHHHHHHHHHHH-TTCEEEEEEEECCSSTTSCEEEEEEEEES---SHHHHHHHHHHHHHHHHHCTTEEEEEECCSS
T ss_pred eechhhHHHHHHHHHh-cCCCEEEEEEecCCCCCCcceEEEEEecC---CHHHHHHHHHHHHHcCCcCCCCCCceEEEcc
Confidence 3466788888888887 688777778777655433 5566666656 5566778888886643445566666554444
Q ss_pred c
Q 023476 269 E 269 (281)
Q Consensus 269 ~ 269 (281)
.
T Consensus 88 ~ 88 (118)
T 3mgj_A 88 K 88 (118)
T ss_dssp S
T ss_pred c
Confidence 3
No 51
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=28.84 E-value=1.5e+02 Score=21.35 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023476 193 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 193 ~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
++..+++.+.+.+ .|+|.+++. ..|+. +.+.++. + +.++ +.+-+.+.+.+.|++.++...+--
T Consensus 75 ~~~~~~~~~~l~~-~p~V~~~~~----~tG~~d~~~~v~~--~---d~~~---l~~~l~~~l~~~~gV~~~~t~ivl 138 (150)
T 2pn6_A 75 KNYHVELGNKLAQ-IPGVWGVYF----VLGDNDFIVMARY--K---TREE---FMEKFLERVMSIPEVERTSTQVVV 138 (150)
T ss_dssp TTHHHHHHHHHHT-STTEEEEEE----CSSSCSEEEEEEE--S---SHHH---HHHHTHHHHTTCTTEEEEEEEECS
T ss_pred hhHHHHHHHHHhc-Cchhhhhhh----hcCcCCEEEEEEE--C---CHHH---HHHHHHHHhccCCCeeEEEEEEEE
Confidence 5677888888876 899876653 23543 5554443 3 4444 444455677778898766555443
No 52
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=28.66 E-value=1.4e+02 Score=20.21 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHH-hcCCCceeEEEEeeccC
Q 023476 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL-ELLPEIERAFVHLDYEY 270 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l-~~~~~i~~v~i~iep~~ 270 (281)
||+- +.+++.+.+ -|+.++.++|. |..+.+++. -+ +.+++.+..+.+.+.| -..|-+.+..+.+++..
T Consensus 20 DPqG-~av~~al~~--LG~~~V~~VR~---gK~~~l~~~--~~---~~~~a~~~v~~~~~~LrLaNpVie~y~~~~~~~~ 88 (92)
T 2zw2_A 20 DPEG-ETIQRYVVS--RFSDKIIETRA---GKYLVFRVN--SS---SQQEATELVKKLADEMRLYNPIVHKIEIRANRIE 88 (92)
T ss_dssp CHHH-HHHHHHTHH--HHCTTEEEEEE---EEEEEEEEE--CS---SHHHHHHHHHHHHHHTTSSCTTTEEEEEEEEEEC
T ss_pred CcHH-HHHHHHHHH--cCCCChhheEE---EEEEEEEec--CC---CHHHHHHHHHHHHhhccccCcceeEEEEEEEecC
Confidence 4443 345555543 23334455554 444444443 22 5566778888888888 55688888888888653
No 53
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=27.79 E-value=1.6e+02 Score=20.88 Aligned_cols=43 Identities=9% Similarity=-0.070 Sum_probs=31.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccC
Q 023476 228 EVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 270 (281)
Q Consensus 228 ~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~ 270 (281)
-+-..++++.+.++..++.+.++....+.|++.++.+-.+...
T Consensus 24 IVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~ 66 (120)
T 3bde_A 24 TVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISP 66 (120)
T ss_dssp EEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCC
Confidence 3444667787878888888888876678999988777655543
No 54
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=27.22 E-value=1.2e+02 Score=20.91 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=21.3
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHH
Q 023476 225 YFVEVDIVLPASMPLQEAHDIGESLQE 251 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~ 251 (281)
+.|.+++.+|++++.++.++++.+=++
T Consensus 3 FlV~m~V~~P~~~~~~~~~~~~a~Eka 29 (96)
T 1mli_A 3 FHVKMTVKLPVDMDPAKATQLKADEKE 29 (96)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 568999999999999888777654433
No 55
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=26.57 E-value=1.7e+02 Score=20.71 Aligned_cols=50 Identities=12% Similarity=-0.042 Sum_probs=34.3
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCCc
Q 023476 225 YFVEVDIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRPE 275 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~~ 275 (281)
.++.++|. ....+.++-.++.+.+.+.+.+. ....++.|+++.-..+++.
T Consensus 65 ~~~~I~i~-~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~I~i~e~~~~~wg 116 (131)
T 2aal_A 65 AVVLLTVI-SRPRSEEQKVCFYKLLTGALERDCGISPDDVIVALVENSDADWS 116 (131)
T ss_dssp TCEEEEEE-ESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEE
T ss_pred CeEEEEEE-eCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHee
Confidence 45556666 44478888888888888888642 2335788888877665544
No 56
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.15 E-value=1.7e+02 Score=22.08 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023476 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
+++..+++.+.+.+ .|+|..++.. .|+. +.+.+.. + +.++.+++ + +.+.+.|++.++...+--
T Consensus 96 ~~~~~~~v~~~l~~-~peV~~~~~v----tG~~d~l~~v~~--~---d~~~l~~~---l-~~l~~~~gV~~~~t~ivl 159 (171)
T 2e1c_A 96 KAGKYSEVASNLAK-YPEIVEVYET----TGDYDMVVKIRT--K---NSEELNNF---L-DLIGSIPGVEGTHTMIVL 159 (171)
T ss_dssp CTTCHHHHHHHHHT-STTEEEEEEC----SSSSSEEEEEEE--S---SHHHHHHH---H-HHHHHSTTEEEEEEEECS
T ss_pred CcchHHHHHHHHhc-CcCeEEEEEe----eCCCCEEEEEEE--C---CHHHHHHH---H-HHHhcCCCcceEEEEEEE
Confidence 34556788888876 8998766542 3553 5554444 3 55554444 3 566677888766655543
No 57
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=25.70 E-value=1.6e+02 Score=20.22 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCCcc
Q 023476 227 VEVDIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRPEH 276 (281)
Q Consensus 227 v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~~~ 276 (281)
+.++|..-+..+.++-.++.+.+.+.+++. ....++.|.+.....+++.-
T Consensus 58 ~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~ 109 (115)
T 2xcz_A 58 CYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRIYIGFEDVPARLWGW 109 (115)
T ss_dssp EEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGCEE
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEECCHHHeee
Confidence 444444455567676677777777777542 23347888888877665543
No 58
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=24.86 E-value=61 Score=23.34 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEEEee
Q 023476 240 QEAHDIGESLQEKLELLPEIERAFVHLD 267 (281)
Q Consensus 240 ~~~~~i~~~i~~~l~~~~~i~~v~i~ie 267 (281)
+.++.+-+.|++.++.+|-+.+++|+++
T Consensus 41 eta~sLE~AIE~si~~QP~v~~v~V~I~ 68 (121)
T 2i52_A 41 ENASMAEEFIERSTMIQPFVENVRISIN 68 (121)
T ss_dssp TTHHHHHHHHHHHHTTSTTEEEEEEEEC
T ss_pred ccHHHHHHHHHHHHhcCCceEEEEEEEe
Confidence 4467788889999999999999999998
No 59
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=23.90 E-value=3e+02 Score=22.60 Aligned_cols=75 Identities=16% Similarity=0.062 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhcCCCcce--eeeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC---CCceeEEEEee
Q 023476 194 EYLQKLTYLCWNHHKSIRH--IDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELL---PEIERAFVHLD 267 (281)
Q Consensus 194 ~~~~~i~~~i~~~~~~v~~--i~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~---~~i~~v~i~ie 267 (281)
...+.+++.+++ .|++.. -..+++...|.. ..+.+...+++.--.+--.++.+++.+.+++. ...-+-+++++
T Consensus 200 ~v~~~l~~~~~~-~~~vl~~p~p~v~v~~~~~~~i~~~v~~~~~~~~~~~~~~~l~~~i~~~~~~~gI~ip~P~~~v~~~ 278 (286)
T 2vv5_A 200 QVKQILTNIIQS-EDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFK 278 (286)
T ss_dssp HHHHHHHHHHHH-CTTBCTTSCEEEEEEEECSSSEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTCCCCCCEEEEEEE
T ss_pred HHHHHHHHHHHh-CcccccCCCCEEEEEEecCCeEEEEEEEEEccchHHHHHHHHHHHHHHHHHHCCCcCCCCceEEEec
Confidence 345556666765 677632 236677778764 66666665544322223456677777777531 12235667766
Q ss_pred cc
Q 023476 268 YE 269 (281)
Q Consensus 268 p~ 269 (281)
..
T Consensus 279 ~~ 280 (286)
T 2vv5_A 279 RV 280 (286)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 60
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=23.19 E-value=1.7e+02 Score=19.74 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCC-CCHHHHHHHHHHHHHHHhcCCCceeEEEE
Q 023476 194 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPAS-MPLQEAHDIGESLQEKLELLPEIERAFVH 265 (281)
Q Consensus 194 ~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~-~~~~~~~~i~~~i~~~l~~~~~i~~v~i~ 265 (281)
++.++|++.+ -+| ......+.--.|=. ..+.+.+.++++ .+ .+.+++.++++.+++++.|.
T Consensus 21 ~L~~~vk~~~---~~g-l~w~~~k~~piafGlk~L~i~~vveD~~~~-------td~lee~i~~~e~Vqsvdv~ 83 (89)
T 1gh8_A 21 ALKKEIQERI---PEG-TELHKIDEEPIAFGLVALNVMVVVGDAEGG-------TEAAEESLSGIEGVSNIEVT 83 (89)
T ss_dssp HHHHHHHHHS---CTT-SEECCCCEEECSSSCEEEEEEEEESSSCGG-------GGHHHHHHTTSCSSEEEEEE
T ss_pred HHHHHHHHhc---cCC-cEEeeeeEEEEEcceeeEEEEEEEEcCCcC-------hHHHHHHHhccCCccEEEEE
Confidence 3445555543 234 44556666666655 667888888654 32 24456667777788877664
No 61
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=22.79 E-value=1.5e+02 Score=18.80 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEE
Q 023476 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 264 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i 264 (281)
.|..+.+|.+.+.+ .| .++.+++....+....+.+.+.++ +.+ -.+++.+.|++.+++.++..
T Consensus 15 r~G~L~~I~~~la~--~~-inI~~i~~~~~~~~~~~~i~v~~~---~~~----~l~~l~~~L~~~~~V~~v~~ 77 (88)
T 2ko1_A 15 KNGMTNQITGVISK--FD-TNIRTIVLNAKDGIFTCNLMIFVK---NTD----KLTTLMDKLRKVQGVFTVER 77 (88)
T ss_dssp CTTHHHHHHHHHTT--SS-SCEEEEEEEECSSEEEEEEEEEES---SHH----HHHHHHHHHTTCTTEEEEEE
T ss_pred CCcHHHHHHHHHHH--CC-CCeEEEEEEEcCCEEEEEEEEEEC---CHH----HHHHHHHHHhcCCCceEEEE
Confidence 35688999999975 34 456777776655434455555554 222 23466677888889877643
No 62
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=22.66 E-value=3.5e+02 Score=23.27 Aligned_cols=59 Identities=3% Similarity=-0.020 Sum_probs=38.3
Q ss_pred HHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCC--HHHHHHHHHHHHHHHhc
Q 023476 196 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMP--LQEAHDIGESLQEKLEL 255 (281)
Q Consensus 196 ~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~--~~~~~~i~~~i~~~l~~ 255 (281)
..+|++.+.+ .|+|.+..-+-+...+..-.+.+.++.+++.+ ..+..++++.+++.+.+
T Consensus 345 p~eiE~~l~~-~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~ 405 (437)
T 2y27_A 345 PTQIEEQLLK-QRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKS 405 (437)
T ss_dssp HHHHHHHHTT-CTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHH
Confidence 4678888876 79987655444444444455667777766543 23456788888888864
No 63
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=22.38 E-value=2.4e+02 Score=28.18 Aligned_cols=97 Identities=12% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--------------CCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEE
Q 023476 161 PVGAIILALYTIRTWSMTVLENVNSLV--------------GRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYF 226 (281)
Q Consensus 161 ~i~s~~i~~~i~~~~~~~~~~~~~~Ll--------------~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~ 226 (281)
|...+++++.++..++-....--.+++ ....+++..+++.+-+++.+.++.++.+++...-+.+.
T Consensus 9 ~~~~~~~~~~l~~~g~~~~~~l~~~~~P~~~~~~v~v~~~~pg~s~~~~~~~v~~~iE~~l~~~~~v~~v~s~sg~~~~- 87 (1052)
T 2v50_A 9 PIFAWVIALVIMLAGGLSILSLPVNQYPAIAPPAIAVQVSYPGASAETVQDTVVQVIEQQMNGIDNLRYISSESNSDGS- 87 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCSSCCCSCCEEEEEEECTTCCHHHHHHHTHHHHHTTCCSCTTEEEEECCEETTSE-
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCHhhCCCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHcCCCCceEEEEEecCCCe-
Q ss_pred EEEEEEcCCCCCHHH-HHHHHHHHHHHHhcCCC
Q 023476 227 VEVDIVLPASMPLQE-AHDIGESLQEKLELLPE 258 (281)
Q Consensus 227 v~~~i~v~~~~~~~~-~~~i~~~i~~~l~~~~~ 258 (281)
..+.++++++.+.++ .+++++++++.+.+.|+
T Consensus 88 ~~i~v~~~~~~~~~~~~~~v~~~l~~~~~~lP~ 120 (1052)
T 2v50_A 88 MTITVTFEQGTDPDIAQVQVQNKLQLATPLLPQ 120 (1052)
T ss_dssp EEEEEEECSSCCHHHHHHHHHHHHHHHGGGSCH
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHHhhCCC
No 64
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=22.11 E-value=1.4e+02 Score=20.24 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=26.0
Q ss_pred EEEEEcCCCCC--HHHHHHHHHHHHHHHh-cCCCceeEE
Q 023476 228 EVDIVLPASMP--LQEAHDIGESLQEKLE-LLPEIERAF 263 (281)
Q Consensus 228 ~~~i~v~~~~~--~~~~~~i~~~i~~~l~-~~~~i~~v~ 263 (281)
.+++.+.+.+. ......+.+-|++.|+ +.|.+..|.
T Consensus 46 ~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~ 84 (92)
T 1veh_A 46 IVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVE 84 (92)
T ss_dssp EEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEE
T ss_pred EEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEE
Confidence 56777776654 4456778889999997 478887664
No 65
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=21.71 E-value=79 Score=22.75 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEEEee
Q 023476 240 QEAHDIGESLQEKLELLPEIERAFVHLD 267 (281)
Q Consensus 240 ~~~~~i~~~i~~~l~~~~~i~~v~i~ie 267 (281)
+.++.+-+.|++.++.+|-+.++++.++
T Consensus 46 eta~sLE~AIE~si~~QP~v~~v~V~I~ 73 (122)
T 2ogf_A 46 YNKESLERAIEEAMKNQPCVYDIKVKIR 73 (122)
T ss_dssp TTHHHHHHHHHHHHHTSTTEEEEEEEEC
T ss_pred ccHHHHHHHHHHHHhcCCceEEEEEEEe
Confidence 4467788889999999999999999998
No 66
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=21.52 E-value=1.9e+02 Score=20.21 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=31.1
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeecc
Q 023476 225 YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 269 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~ 269 (281)
+.=-+-..++++.+.++..++.+.++..-.+.|++.++.+-.+..
T Consensus 22 I~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s 66 (116)
T 3bgu_A 22 IRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG 66 (116)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence 344455567888888888888777755434589998776665554
No 67
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=21.49 E-value=2.2e+02 Score=20.02 Aligned_cols=49 Identities=6% Similarity=0.067 Sum_probs=24.6
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCC
Q 023476 226 FVEVDIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRP 274 (281)
Q Consensus 226 ~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~ 274 (281)
...++|..-+..+.++-.++.+.+.+.+.+. ....++.|.+..-..+++
T Consensus 57 ~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~w 107 (125)
T 2wkb_A 57 YCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVYIEFRDCSAQNF 107 (125)
T ss_dssp CEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGGEEEEEEC----CE
T ss_pred cEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEECCHHHe
Confidence 3455555555566666667777777777542 233478888877665443
No 68
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=21.06 E-value=2.1e+02 Score=22.43 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEE
Q 023476 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 264 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i 264 (281)
.|..+++|...+.. .| .++..+.+-.....-...+.+.++.+ ++..+++++.+.+...+.+|.-
T Consensus 39 ~pGvLaRItglfsr--RG-~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~KLidVikV~d 102 (193)
T 2fgc_A 39 KPGVMRKVANLFAR--RG-FNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYKLVEVVKVTP 102 (193)
T ss_dssp CTTHHHHHHHHHHT--TT-CEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTTSTTEEEEEE
T ss_pred CChHHHHHHHHHHH--CC-ceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcCcCceEEEEE
Confidence 56789999999965 55 45666666544332233344444432 3466777888888777766643
No 69
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=20.35 E-value=2.4e+02 Score=20.13 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEecC--------------eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc
Q 023476 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS--------------HYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 255 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~--------------~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~ 255 (281)
.+|+.++++++.+.+ .||+.++.--.+...|+ .-.+-+.+.++++ +++++.+.|++..+.
T Consensus 30 IrP~kld~V~daL~~-~~gi~G~TvseV~G~Grqkg~~S~~E~yrG~epKvkiEivv~d~----~ve~vv~aI~~~a~t 103 (120)
T 3ce8_A 30 AQNDIKDDIVDTLIE-LEFLSGFSLGNICGFSREHSHFNIKEQVEGYREFCKFEIMHPAA----QQAALLTALALVCKH 103 (120)
T ss_dssp EEGGGHHHHHHHHTT-CTTCCCCEEEEEEEEECC-----------EEEEEEEEEEEEEGG----GHHHHHHHHHHHTTT
T ss_pred eCHHHHHHHHHHHHh-CCCCCcEEEEeeEEeCCCCCCCCceeEEecCCceEEEEEEECHH----HHHHHHHHHHHHcCC
Confidence 367889999999987 66765544333333332 2235566666543 467888888887643
Done!