RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023476
(281 letters)
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 133 bits (338), Expect = 7e-38
Identities = 54/271 (19%), Positives = 118/271 (43%), Gaps = 12/271 (4%)
Query: 2 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFI-LWFTAFSMQTPNPYQYPIGKKRMQP 60
+L K++A +GS++I+A+ +DSL+D+ + L +S+Q + + G + +
Sbjct: 15 LLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADD-NHSFGHGKAES 73
Query: 61 LGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYC 120
L L + ++ L + L ++ L+S V + + + ++LV +
Sbjct: 74 LAALAQSMFISGSALFLFLTGIQHLISPT-----PMTDPGVGVIVTIVALICTIILVSFQ 128
Query: 121 RAFTNEI----VKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWS 176
R V+A + DV+ N L+A+ L+ Y D + A+ + +Y + +
Sbjct: 129 RWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIYILYSAL 188
Query: 177 MTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS 236
E V SL+ R+ E Q++ + + +R G F+++ + + S
Sbjct: 189 RMGYEAVQSLLDRALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDS 247
Query: 237 MPLQEAHDIGESLQEKLELLPEIERAFVHLD 267
+PL +AH + + +++ + +H D
Sbjct: 248 LPLVQAHMVADQVEQAILRRFPGSDVIIHQD 278
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
(CDF), transporter, zinc, membrane protein, cytosolic
domain; 2.84A {Thermotoga maritima}
Length = 107
Score = 58.6 bits (142), Expect = 2e-11
Identities = 14/63 (22%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 206 HHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL-ELLPEIERAFV 264
++ + VR G+ YF+E+DI + M +++AH++ +++++ + +IE +
Sbjct: 21 RFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTI 80
Query: 265 HLD 267
H++
Sbjct: 81 HVE 83
>3byp_A CZRB protein; membrane protein, zinc transporter, transport
protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1
PDB: 3byr_A
Length = 94
Score = 56.6 bits (137), Expect = 8e-11
Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 186 LVGRSAAPEYLQKLTYLCWNHHKS-IRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHD 244
L+ PE ++++ + + ++ G F+E +V+ P++EAH
Sbjct: 2 LMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHR 61
Query: 245 IGESLQEKL-ELLPEIERAFVHLDYEYTHRPEHAQAH 280
+ + L+ L + P ++ A +H++ PE +
Sbjct: 62 LCDELERALAQAFPGLQ-ATIHVE------PEGERKR 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 5e-04
Identities = 37/320 (11%), Positives = 80/320 (25%), Gaps = 88/320 (27%)
Query: 13 KSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMAT 72
K+ +A+ + + I W + P +L ++
Sbjct: 163 KT-WVALDVCLSYKVQCKMDFKIFWLN-------------LKNCN-SPETVL---EMLQK 204
Query: 73 LGLQIILESLRTLVSNEDQFNLTKEQ-EQWVVGIMLSVTLVKLLLV---VYCRAFTNEIV 128
L QI + + + L + + ++ S LLV V +
Sbjct: 205 LLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ----NAKAW 259
Query: 129 KAYAQDHFFD------VITNIIGLVAVLLANY-----IDDWMDPV----GAIILALYTIR 173
A F+ + T + L A +D + +L Y
Sbjct: 260 NA------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-- 311
Query: 174 TWSMTVLE------NVN----SLVGRS-----AAPEYLQKLTYLCWNHHKSIRH-IDTVR 217
+ N S++ S A + + C I ++ +
Sbjct: 312 --DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH--VNCDKLTTIIESSLNVLE 367
Query: 218 AYTFGSHY-----FVE-VDI---VLP---ASMPLQEAHDIGESLQEK--LELLPEIERAF 263
+ + F I +L + + + L + +E P+
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 264 VH---LDYEYTHRPEHAQAH 280
+ L+ + H
Sbjct: 428 IPSIYLELK-VKLENEYALH 446
Score = 33.7 bits (76), Expect = 0.084
Identities = 29/245 (11%), Positives = 74/245 (30%), Gaps = 72/245 (29%)
Query: 63 ILVFA-SVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR 121
+ VF + + + + + ++++S E+ ++ ++ V+ L
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA--------VSGTLRLFWTLLS 73
Query: 122 AFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWM---------DPVGAIILALYTI 172
E+V+ + ++ VL NY ++ P + +
Sbjct: 74 K-QEEMVQKFVEE--------------VLRINY--KFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 173 -RTWS-------MTV--LENVNSLVGRSAAPEYLQKLTYLCWNHH------KSIRHIDTV 216
R ++ V L+ L R A E L+ + K+ +D
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKL--RQALLE-LRPAKNVLI--DGVLGSGKTWVALDVC 171
Query: 217 RAYTFGSHYFVEVDIVLPASMPLQEAH--DIGESLQEKLELLPEIERAFVHLDYEYTHRP 274
+Y ++ ++ +L +++ +D +T R
Sbjct: 172 LSYKVQCKMDFKI-------------FWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 275 EHAQA 279
+H+
Sbjct: 218 DHSSN 222
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.044
Identities = 39/243 (16%), Positives = 67/243 (27%), Gaps = 75/243 (30%)
Query: 26 SLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESL-RT 84
+ +L+ F L + + ++ Q+ V L + L
Sbjct: 56 TPAELVGKF-LGYVSSLVEPSKVGQF---------------DQV-----LNLCLTEFENC 94
Query: 85 LVSNED----QFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA--FTNEIVKAYAQDHFFD 138
+ D L +E + ++ K L+ Y A + F
Sbjct: 95 YLEGNDIHALAAKLLQENDT-------TLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 139 -VITNIIGLVAVL-----LANYIDDWMDPVGAIILA-LYT-----IRTWSMTVLENVNSL 186
V LVA+ +Y ++ L LY + E ++ L
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEE---------LRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 187 V--GRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPL----Q 240
+ A + Q L L W + S Y + + P S PL Q
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTP---------DKDYLLSI----PISCPLIGVIQ 245
Query: 241 EAH 243
AH
Sbjct: 246 LAH 248
Score = 30.0 bits (67), Expect = 0.95
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 215 TVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEK-LELLPEIERAFVHLDYEYTHR 273
+ R T SH +E +++P + I LQE+ ++LPE F D E T
Sbjct: 5 STRPLTL-SHGSLEHVLLVPTAS-----FFIASQLQEQFNKILPEPTEGFAA-DDEPTTP 57
Query: 274 PE 275
E
Sbjct: 58 AE 59
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 7 KVYASVKSGSLAIIAS 22
K+YA + +LAI A+
Sbjct: 30 KLYADDSAPALAIKAT 45
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron,
oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2
PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A
2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A
1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Length = 375
Score = 28.6 bits (64), Expect = 2.5
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 76 QIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDH 135
Q +L LR+ + + + +E +Q + + + K +A
Sbjct: 246 QHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAA---------------QQEKDWADYL 290
Query: 136 FFDVITNIIGLVAVLLANYID 156
F D ++IGL +L Y++
Sbjct: 291 FRDG--SMIGLNKDILCQYVE 309
>3pk1_A Induced myeloid leukemia cell differentiation Pro 1; BCL-2 family
fold, regulation of apoptosis, mitochondri
apoptosis-apoptosis regulator complex; 2.49A {Homo
sapiens}
Length = 189
Score = 27.3 bits (59), Expect = 4.4
Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Query: 67 ASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQW----VVGIMLSVTLVKLLLVVYCRA 122
+ +G + + ++ E + V+ + S + +V +
Sbjct: 73 LETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLIS 132
Query: 123 FTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWM 159
F + K + I + + +L DW+
Sbjct: 133 FGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWL 169
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha
helical integral membrane protein, STRU genomics, PSI-2;
HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A*
3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A*
3m78_A* 3m76_A* 3m72_A*
Length = 314
Score = 26.8 bits (59), Expect = 7.8
Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 6/126 (4%)
Query: 55 KKRMQPLGILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKL 114
+ PL F + L + L L + +V + + + +
Sbjct: 3 ITKPFPLPTGYFGIPLGLAALSLAWFHLENLFPAARMVSDV----LGIVASAVWILFILM 58
Query: 115 LLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRT 174
F E V+A +I + +L+ + + W + +++ + TI
Sbjct: 59 YAYKLRYYF--EEVRAEYHSPVRFSFIALIPITTMLVGDILYRWNPLIAEVLIWIGTIGQ 116
Query: 175 WSMTVL 180
+ L
Sbjct: 117 LLFSTL 122
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 27.0 bits (59), Expect = 9.1
Identities = 9/66 (13%), Positives = 22/66 (33%)
Query: 187 VGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIG 246
+G++ A ++ L L + S +F +V+ +P + +
Sbjct: 83 IGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLA 142
Query: 247 ESLQEK 252
+ L
Sbjct: 143 DVLWNS 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.409
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,331,302
Number of extensions: 254409
Number of successful extensions: 571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 563
Number of HSP's successfully gapped: 18
Length of query: 281
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 189
Effective length of database: 4,133,061
Effective search space: 781148529
Effective search space used: 781148529
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.6 bits)