RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 023476
         (281 letters)



>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
           {Escherichia coli [TaxId: 562]}
          Length = 204

 Score = 94.5 bits (234), Expect = 4e-24
 Identities = 40/188 (21%), Positives = 83/188 (44%), Gaps = 1/188 (0%)

Query: 2   VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPL 61
           +L   K++A   +GS++I+A+ +DSL+D+ +             P    +  G  + + L
Sbjct: 18  LLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESL 77

Query: 62  GILVFASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR 121
             L  +  ++   L + L  ++ L+S     +        +V ++ ++ LV        R
Sbjct: 78  AALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILV-SFQRWVVR 136

Query: 122 AFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVLE 181
              ++ V+A    +  DV+ N   L+A+ L+ Y     D + A+ + +Y + +      E
Sbjct: 137 RTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYE 196

Query: 182 NVNSLVGR 189
            V SL+ R
Sbjct: 197 AVQSLLDR 204


>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
           {Escherichia coli [TaxId: 562]}
          Length = 82

 Score = 72.8 bits (179), Expect = 2e-17
 Identities = 12/78 (15%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 190 SAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESL 249
           +   E  Q++  +       +     +R    G   F+++ + +  S+PL +AH + + +
Sbjct: 1   ALPDEERQEIIDIV-TSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQV 59

Query: 250 QEKLELLPEIERAFVHLD 267
           ++ +          +H D
Sbjct: 60  EQAILRRFPGSDVIIHQD 77


>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus
           thermophilus [TaxId: 274]}
          Length = 82

 Score = 66.7 bits (163), Expect = 5e-15
 Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 193 PEYLQKLTYLCWNHHKS-IRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQE 251
           PE ++++        +     +  ++    G   F+E  +V+    P++EAH + + L+ 
Sbjct: 4   PEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELER 63

Query: 252 KLELLPEIERAFVHLDYE 269
            L       +A +H++ E
Sbjct: 64  ALAQAFPGLQATIHVEPE 81


>gi|152988212|ref|YP_001348091.1|(1-96:96) muconolactone
           delta-isomerase [Pseudomonas aeruginosa PA7] 
           gi|150963370|gb|ABR85395.1| muconolactone
           delta-isomerase [Pseudomonas aeruginosa PA7]  E=1e-44
           s/c=1.89 id=85% cov=101%
          Length = 96

 Score = 25.8 bits (57), Expect = 2.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 225 YFVEVDIVLPASMPLQEAHDI 245
           + V++ + LPA M  Q A  +
Sbjct: 3   FHVKMTVKLPADMDPQRAERL 23


>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 316

 Score = 26.5 bits (58), Expect = 3.7
 Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 4/46 (8%)

Query: 170 YTIRTWSMTVLENVNSLVGRSAAPEYLQKLTY-LC---WNHHKSIR 211
             I+  S+ ++ +  +          +    Y L    W   +S  
Sbjct: 249 TPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRN 294


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,031,491
Number of extensions: 46046
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 9
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.0 bits)