BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023478
         (281 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O66874|PBPA_AQUAE Penicillin-binding protein 1A OS=Aquifex aeolicus (strain VF5)
           GN=mrcA PE=1 SV=1
          Length = 726

 Score = 35.4 bits (80), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 13/102 (12%)

Query: 38  YKFSEIRVQLVP-----KLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIGL 92
           YKFS+  + +V      K     Y GRL+I+ + D + + I +  + E ++  ++ +IGL
Sbjct: 253 YKFSDYFLDMVKSYVFNKYGEIAYKGRLKIYTTIDLDYQKIAQKSLEEGLK-RVAKIIGL 311

Query: 93  RANCSVTDSW-----ATTEIQRLRLGRVYVASILY--GYFLK 127
                  +          +++RL+ G++YVA IL   G F+K
Sbjct: 312 PFLPKSEEDMELAYEKEAQLKRLKRGKIYVAKILKYDGNFMK 353


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,620,548
Number of Sequences: 539616
Number of extensions: 3977058
Number of successful extensions: 8361
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8361
Number of HSP's gapped (non-prelim): 2
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)