Query 023478
Match_columns 281
No_of_seqs 96 out of 113
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 07:29:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dve_B Voltage-dependent N-typ 54.1 4.6 0.00016 24.5 1.0 19 111-129 1-19 (23)
2 3dvk_B Voltage-dependent R-typ 50.0 8.2 0.00028 23.4 1.7 19 111-129 2-20 (23)
3 3bxl_B CAM, voltage-dependent 38.7 17 0.00059 22.6 1.9 20 114-133 1-20 (26)
4 3g43_E Voltage-dependent L-typ 33.8 13 0.00043 28.8 0.9 20 108-127 56-75 (81)
5 2f6m_A Suppressor protein STP2 32.4 45 0.0015 24.6 3.7 23 11-35 3-25 (65)
6 2xf7_A GP23.1; viral protein; 26.0 16 0.00056 25.6 0.3 21 119-139 4-24 (51)
7 2qsr_A Transcription-repair co 19.0 37 0.0013 28.6 1.2 21 10-30 31-51 (173)
8 3s1b_A Mini-Z; VEGF, cystine k 16.8 57 0.0019 21.0 1.4 14 7-20 15-28 (34)
9 2kbv_A Sodium/hydrogen exchang 14.4 45 0.0015 20.8 0.4 22 244-269 5-27 (28)
10 2p22_A Suppressor protein STP2 11.7 2.1E+02 0.0072 24.6 4.0 25 9-35 110-134 (174)
No 1
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=54.12 E-value=4.6 Score=24.52 Aligned_cols=19 Identities=21% Similarity=0.787 Sum_probs=15.7
Q ss_pred hhhhHHHHHhhhhHhhhhh
Q 023478 111 RLGRVYVASILYGYFLKSA 129 (281)
Q Consensus 111 ~Lg~vyAAsmM~GYFLr~~ 129 (281)
.+|++||+=|++-||=++-
T Consensus 1 ~VGKiYAallI~d~~r~~k 19 (23)
T 3dve_B 1 HMGKVYAALMIFDFYKQNK 19 (26)
T ss_dssp CCHHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHHHHHh
Confidence 3699999999999996543
No 2
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=50.02 E-value=8.2 Score=23.39 Aligned_cols=19 Identities=26% Similarity=0.772 Sum_probs=16.2
Q ss_pred hhhhHHHHHhhhhHhhhhh
Q 023478 111 RLGRVYVASILYGYFLKSA 129 (281)
Q Consensus 111 ~Lg~vyAAsmM~GYFLr~~ 129 (281)
.+|++||+=|++-||-+.-
T Consensus 2 ~VGKiYA~llI~d~~r~~k 20 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSK 20 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHh
Confidence 4799999999999997653
No 3
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=38.73 E-value=17 Score=22.58 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=16.2
Q ss_pred hHHHHHhhhhHhhhhhhhHh
Q 023478 114 RVYVASILYGYFLKSASLRY 133 (281)
Q Consensus 114 ~vyAAsmM~GYFLr~~eqR~ 133 (281)
+||||=|++-||=++=..|-
T Consensus 1 KvYAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 1 KIYAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred ChhHHHHHHHHHHHHHhhhh
Confidence 48999999999977666654
No 4
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=33.76 E-value=13 Score=28.80 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=15.4
Q ss_pred chhhhhhHHHHHhhhhHhhh
Q 023478 108 QRLRLGRVYVASILYGYFLK 127 (281)
Q Consensus 108 sr~~Lg~vyAAsmM~GYFLr 127 (281)
+..++|++||+=|++-||=+
T Consensus 56 ~~lTVGKiYA~llI~d~~r~ 75 (81)
T 3g43_E 56 DEVTVGKFYATFLIQEYFRK 75 (81)
T ss_dssp ---CCCCHHHHHHHHHHHHH
T ss_pred CcEeehHHHHHHHHHHHHHH
Confidence 56889999999999999944
No 5
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=32.41 E-value=45 Score=24.58 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=19.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHH
Q 023478 11 PLHRRIAQLKEHECQTAVEDVMYML 35 (281)
Q Consensus 11 ~LyrRIAevKe~Err~alEdImY~l 35 (281)
.||+.+=++-+.|+ |+||.||.|
T Consensus 3 pl~~Qll~l~Aed~--AieDaiy~L 25 (65)
T 2f6m_A 3 DGLNQLYNLVAQDY--ALTDTIEAL 25 (65)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--HHHHHHHHH
Confidence 47888888888875 999999986
No 6
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=25.95 E-value=16 Score=25.62 Aligned_cols=21 Identities=52% Similarity=0.599 Sum_probs=13.1
Q ss_pred HhhhhHhhhhhhhHhHHHHHH
Q 023478 119 SILYGYFLKSASLRYYLEECL 139 (281)
Q Consensus 119 smM~GYFLr~~eqR~~LE~sl 139 (281)
|++||||+-.--.--.+|.-|
T Consensus 4 S~L~G~F~D~W~~GT~~~~~m 24 (51)
T 2xf7_A 4 SLLYGYFLDSWLDGTASEELL 24 (51)
T ss_dssp CTTHHHHHHHHHHTCCCHHHH
T ss_pred hHHHHHHHHHHhcchhhHHHH
Confidence 689999997654433333333
No 7
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=19.01 E-value=37 Score=28.59 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=16.2
Q ss_pred hhHHHHHHHHhHHHHHHHHHH
Q 023478 10 GPLHRRIAQLKEHECQTAVED 30 (281)
Q Consensus 10 ~~LyrRIAevKe~Err~alEd 30 (281)
+.||||||.++..|--.++++
T Consensus 31 L~lYkria~~~~~eel~~l~~ 51 (173)
T 2qsr_A 31 IEIYKKIRQIDNRVNYEELQE 51 (173)
T ss_dssp HHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 679999999988776555543
No 8
>3s1b_A Mini-Z; VEGF, cystine knot, signaling protein; 2.90A {Homo sapiens}
Probab=16.83 E-value=57 Score=20.99 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=10.6
Q ss_pred CCchhHHHHHHHHh
Q 023478 7 SDEGPLHRRIAQLK 20 (281)
Q Consensus 7 s~e~~LyrRIAevK 20 (281)
.+.+-||.|||.+-
T Consensus 15 dpnlnlyqriakiv 28 (34)
T 3s1b_A 15 DPNLNLYQRIAKIV 28 (34)
T ss_dssp CSSCCHHHHHHHHH
T ss_pred CCChhHHHHHHHHh
Confidence 35677999999763
No 9
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=14.42 E-value=45 Score=20.84 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=14.8
Q ss_pred EEechhhhHHHHHHHHhhh-hhhhhhh
Q 023478 244 ILTSFSSLKRLVLEAIAFG-SFLWDAE 269 (281)
Q Consensus 244 i~isf~~LkrLVLEAvAFG-SFLwDvE 269 (281)
..+.|+|||= ||||+ +|+|+.|
T Consensus 5 ~i~~~~GLRG----AvafaL~~~l~~~ 27 (28)
T 2kbv_A 5 FIIAYGGLRG----AIAFSLGYLLDKK 27 (28)
T ss_dssp HHTTTTSSCH----HHHHHHHHHHHHC
T ss_pred eEEEeecchH----HHHHHHHHhccCC
Confidence 3478889987 77776 4555544
No 10
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=11.68 E-value=2.1e+02 Score=24.56 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=20.7
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHH
Q 023478 9 EGPLHRRIAQLKEHECQTAVEDVMYML 35 (281)
Q Consensus 9 e~~LyrRIAevKe~Err~alEdImY~l 35 (281)
...||+.+=++-+.++ |+||.||+|
T Consensus 110 ~~~l~~Qll~l~Aed~--AieDaIy~L 134 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDY--ALTDTIECL 134 (174)
T ss_dssp SSHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3568888888888875 999999986
Done!