Query 023478
Match_columns 281
No_of_seqs 96 out of 113
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 07:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023478.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023478hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fnaa1 a.4.5.11 (A:284-356) H 19.9 16 0.0012 25.8 1.0 20 253-273 9-29 (73)
2 d2nn6a2 d.101.1.1 (A:185-302) 17.1 60 0.0044 23.5 3.9 32 201-232 57-88 (118)
3 d2nn6c2 d.101.1.1 (C:188-276) 15.2 75 0.0054 21.5 3.8 29 201-229 55-83 (89)
4 d2nn6e2 d.101.1.1 (E:192-285) 13.1 93 0.0068 21.3 3.8 30 201-230 55-84 (94)
5 d2je6a2 d.101.1.1 (A:192-275) 11.1 89 0.0065 20.7 3.1 29 201-229 54-82 (84)
6 d2eyqa6 d.315.1.1 (A:990-1147) 11.0 55 0.004 24.4 2.1 19 10-28 35-53 (158)
7 d1h9aa2 d.81.1.5 (A:182-412,A: 10.3 25 0.0018 30.0 -0.3 22 78-99 52-73 (290)
8 d1r59o2 c.55.1.4 (O:257-491) G 9.7 58 0.0042 26.0 1.9 18 246-263 116-133 (235)
9 d1qkia2 d.81.1.5 (A:200-434,A: 9.3 29 0.0021 29.8 -0.3 23 77-99 56-78 (297)
10 d2f6ma1 a.2.17.1 (A:322-385) V 9.0 67 0.0049 21.9 1.7 10 26-35 15-24 (64)
No 1
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=19.93 E-value=16 Score=25.77 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=14.8
Q ss_pred HHHHHHHhhhhhhh-hhhhhcc
Q 023478 253 RLVLEAIAFGSFLW-DAEEYAD 273 (281)
Q Consensus 253 rLVLEAvAFGSFLw-DvEsyVD 273 (281)
..||+|||+|+- | ++=.||+
T Consensus 9 ~~ILkaia~G~r-Ws~IK~yle 29 (73)
T d2fnaa1 9 LNIMRTLSKCGK-WSDVKRALE 29 (73)
T ss_dssp HHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHHHHHHccCc-HHHHHHHHH
Confidence 579999999975 6 4555554
No 2
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.12 E-value=60 Score=23.46 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=28.7
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhhccC
Q 023478 201 GFDPETLQRCAKLRSREAVNLVEKHSCALFGD 232 (281)
Q Consensus 201 ~fD~eTLqr~A~irSkEav~liEkht~ALFG~ 232 (281)
.|+++++.+|..+..+.+-.|.+..-.||-.+
T Consensus 57 ~l~~~~l~~~~~~A~~~~~el~~~i~~aLk~~ 88 (118)
T d2nn6a2 57 MLLKDQVLRCSKIAGVKVAEITELILKALEND 88 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999998643
No 3
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.22 E-value=75 Score=21.50 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=26.3
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhh
Q 023478 201 GFDPETLQRCAKLRSREAVNLVEKHSCAL 229 (281)
Q Consensus 201 ~fD~eTLqr~A~irSkEav~liEkht~AL 229 (281)
.|++++++.|..+..+.+-.|.+..-+||
T Consensus 55 ~l~~~~l~~~~~~A~~~~~~l~~~l~~al 83 (89)
T d2nn6c2 55 GLTGAKLQDCMSRAVTRHKEVKKLMDEVI 83 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999888876
No 4
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.13 E-value=93 Score=21.29 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=27.4
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhhc
Q 023478 201 GFDPETLQRCAKLRSREAVNLVEKHSCALF 230 (281)
Q Consensus 201 ~fD~eTLqr~A~irSkEav~liEkht~ALF 230 (281)
.|+++++..|..+..+-+..|.+..-+||=
T Consensus 55 ~l~~~~i~~~i~~A~~~~~el~~~l~~~L~ 84 (94)
T d2nn6e2 55 SLDPESIFEMMETGKRVGKVLHASLQSVVH 84 (94)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999888873
No 5
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=11.14 E-value=89 Score=20.66 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=26.2
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhh
Q 023478 201 GFDPETLQRCAKLRSREAVNLVEKHSCAL 229 (281)
Q Consensus 201 ~fD~eTLqr~A~irSkEav~liEkht~AL 229 (281)
.|+++.+.+|-.+..+.+..|++..-+||
T Consensus 54 ~~~~~~i~~~i~~A~~~~~~l~~~l~~~l 82 (84)
T d2je6a2 54 SMSLQDIDQAENTARSTAVKLLEELKKHL 82 (84)
T ss_dssp CEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999887775
No 6
>d2eyqa6 d.315.1.1 (A:990-1147) Transcription-repair coupling factor, TRCF, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.96 E-value=55 Score=24.43 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=14.6
Q ss_pred hhHHHHHHHHhHHHHHHHH
Q 023478 10 GPLHRRIAQLKEHECQTAV 28 (281)
Q Consensus 10 ~~LyrRIAevKe~Err~al 28 (281)
+.+|||||..+..+--..+
T Consensus 35 l~~Ykrla~~~~~~el~~i 53 (158)
T d2eyqa6 35 LSFYKRIASAKTENELEEI 53 (158)
T ss_dssp HHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHH
Confidence 6799999999877655444
No 7
>d1h9aa2 d.81.1.5 (A:182-412,A:427-485) Glucose 6-phosphate dehydrogenase {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=10.27 E-value=25 Score=29.99 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhccccCCCCC
Q 023478 78 VLEMIREHISTVIGLRANCSVT 99 (281)
Q Consensus 78 v~emI~~hl~~vLG~~~~~~~~ 99 (281)
+.+||+|||..||...+-+.+.
T Consensus 52 iRDmvQNHLlQll~lvaMe~P~ 73 (290)
T d1h9aa2 52 LLDMIQNHTMQIVGWLAMEKPE 73 (290)
T ss_dssp HHHTTTTHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 4799999999999988766554
No 8
>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}
Probab=9.68 E-value=58 Score=26.05 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=14.6
Q ss_pred echhhhHHHHHHHHhhhh
Q 023478 246 TSFSSLKRLVLEAIAFGS 263 (281)
Q Consensus 246 isf~~LkrLVLEAvAFGS 263 (281)
.+-..+=|.|||+|||+.
T Consensus 116 ~~~~~l~rAvlEgiaf~~ 133 (235)
T d1r59o2 116 TTKEDFVRATLQAVAYQS 133 (235)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 345568999999999984
No 9
>d1qkia2 d.81.1.5 (A:200-434,A:450-511) Glucose 6-phosphate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.29 E-value=29 Score=29.81 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhccccCCCCC
Q 023478 77 EVLEMIREHISTVIGLRANCSVT 99 (281)
Q Consensus 77 Ev~emI~~hl~~vLG~~~~~~~~ 99 (281)
-+.+||+|||..||...+-+.+.
T Consensus 56 alRDmvQNHllQll~lvaME~P~ 78 (297)
T d1qkia2 56 IIRDVMQNHLLQMLCLVAMEKPA 78 (297)
T ss_dssp HHHHTTTTHHHHHHHHHHCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHhCCcc
Confidence 45899999999999987666544
No 10
>d2f6ma1 a.2.17.1 (A:322-385) Vacuolar protein sorting-associated protein 23, VPS23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.99 E-value=67 Score=21.86 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=8.7
Q ss_pred HHHHHHHHHH
Q 023478 26 TAVEDVMYML 35 (281)
Q Consensus 26 ~alEdImY~l 35 (281)
.|+||.||+|
T Consensus 15 ~AieDaiy~L 24 (64)
T d2f6ma1 15 YALTDTIEAL 24 (64)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5899999986
Done!