Query 023479
Match_columns 281
No_of_seqs 350 out of 1606
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 07:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xsd_C POU domain, class 3, tr 100.0 2.3E-36 7.8E-41 258.7 3.7 150 6-169 11-160 (164)
2 3l1p_A POU domain, class 5, tr 100.0 4.8E-36 1.7E-40 254.3 3.8 151 2-166 4-154 (155)
3 1au7_A Protein PIT-1, GHF-1; c 100.0 5.9E-36 2E-40 251.5 4.0 143 8-166 3-145 (146)
4 3d1n_I POU domain, class 6, tr 100.0 4E-35 1.4E-39 247.4 5.4 148 7-165 3-150 (151)
5 1e3o_C Octamer-binding transcr 100.0 6E-34 2E-38 242.5 4.8 154 7-166 6-159 (160)
6 2dms_A Homeobox protein OTX2; 99.8 8E-20 2.7E-24 138.0 6.8 65 101-170 5-69 (80)
7 2dmq_A LIM/homeobox protein LH 99.8 1.9E-19 6.4E-24 135.8 7.2 66 101-171 5-70 (80)
8 2cue_A Paired box protein PAX6 99.8 2.1E-19 7.1E-24 135.8 6.2 67 101-172 5-71 (80)
9 1puf_A HOX-1.7, homeobox prote 99.8 4.2E-19 1.4E-23 133.2 7.1 66 99-169 9-74 (77)
10 1nk2_P Homeobox protein VND; h 99.8 4.1E-19 1.4E-23 133.3 6.6 67 99-170 5-71 (77)
11 2dmt_A Homeobox protein BARH-l 99.8 2.9E-19 9.8E-24 135.0 5.6 65 99-168 13-77 (80)
12 2da3_A Alpha-fetoprotein enhan 99.8 2.5E-19 8.6E-24 134.8 5.2 65 99-168 13-77 (80)
13 1b8i_A Ultrabithorax, protein 99.8 2.7E-19 9.2E-24 135.6 4.6 72 92-168 9-80 (81)
14 2dmu_A Homeobox protein goosec 99.8 4.9E-19 1.7E-23 130.3 5.7 62 102-168 6-67 (70)
15 2da1_A Alpha-fetoprotein enhan 99.8 3.7E-19 1.3E-23 130.8 4.5 63 101-168 5-67 (70)
16 2cra_A Homeobox protein HOX-B1 99.8 2.9E-19 9.8E-24 131.7 3.8 63 101-168 5-67 (70)
17 2da2_A Alpha-fetoprotein enhan 99.8 3.3E-19 1.1E-23 131.1 3.9 64 100-168 4-67 (70)
18 2vi6_A Homeobox protein nanog; 99.8 2.9E-19 9.8E-24 128.6 3.2 61 102-167 2-62 (62)
19 2h1k_A IPF-1, pancreatic and d 99.8 5.8E-19 2E-23 127.5 4.8 60 103-167 3-62 (63)
20 1ahd_P Antennapedia protein mu 99.7 5.9E-19 2E-23 129.4 4.8 62 103-169 2-63 (68)
21 1zq3_P PRD-4, homeotic bicoid 99.7 1E-18 3.5E-23 128.0 5.9 63 103-170 2-64 (68)
22 2kt0_A Nanog, homeobox protein 99.7 7.7E-19 2.7E-23 133.5 5.4 65 99-168 18-82 (84)
23 2e1o_A Homeobox protein PRH; D 99.7 1.3E-18 4.5E-23 128.1 5.6 62 102-168 6-67 (70)
24 2hdd_A Protein (engrailed home 99.7 7.6E-19 2.6E-23 125.9 4.3 58 103-165 3-60 (61)
25 1wh5_A ZF-HD homeobox family p 99.7 8.8E-19 3E-23 132.8 4.7 62 99-165 13-78 (80)
26 1fjl_A Paired protein; DNA-bin 99.7 1.4E-18 4.8E-23 131.4 5.7 65 100-169 15-79 (81)
27 1ig7_A Homeotic protein MSX-1; 99.7 1.1E-18 3.8E-23 123.7 4.7 57 104-165 1-57 (58)
28 1ftt_A TTF-1 HD, thyroid trans 99.7 1.3E-18 4.5E-23 127.5 5.1 63 103-170 2-64 (68)
29 2djn_A Homeobox protein DLX-5; 99.7 5.6E-19 1.9E-23 130.1 3.0 63 101-168 5-67 (70)
30 2l7z_A Homeobox protein HOX-A1 99.7 1.4E-18 4.8E-23 129.1 5.1 65 100-169 4-68 (73)
31 2cuf_A FLJ21616 protein; homeo 99.7 2.4E-18 8.1E-23 134.1 6.6 65 101-170 5-84 (95)
32 1yz8_P Pituitary homeobox 2; D 99.7 8.9E-19 3E-23 128.3 3.8 64 102-170 2-65 (68)
33 3a01_A Homeodomain-containing 99.7 2.8E-18 9.5E-23 133.4 6.1 68 99-171 13-80 (93)
34 1jgg_A Segmentation protein EV 99.7 1.9E-18 6.5E-23 123.5 4.6 58 104-166 2-59 (60)
35 1wh7_A ZF-HD homeobox family p 99.7 1.5E-18 5.2E-23 131.6 4.1 61 99-165 13-78 (80)
36 1bw5_A ISL-1HD, insulin gene e 99.7 1.2E-18 4E-23 126.9 3.2 62 102-168 2-63 (66)
37 2da4_A Hypothetical protein DK 99.7 1.8E-18 6.2E-23 130.5 4.4 66 99-169 4-73 (80)
38 2hi3_A Homeodomain-only protei 99.7 5E-18 1.7E-22 126.0 6.2 61 104-169 3-64 (73)
39 2m0c_A Homeobox protein arista 99.7 2.8E-18 9.6E-23 127.4 4.6 65 100-169 6-70 (75)
40 2r5y_A Homeotic protein sex co 99.7 1.8E-18 6.2E-23 132.9 3.6 63 100-167 25-87 (88)
41 1uhs_A HOP, homeodomain only p 99.7 4.8E-18 1.6E-22 125.7 5.8 61 104-169 2-63 (72)
42 2k40_A Homeobox expressed in E 99.7 2.5E-18 8.6E-23 125.5 4.1 61 104-169 2-62 (67)
43 3rkq_A Homeobox protein NKX-2. 99.7 3.9E-18 1.3E-22 120.4 4.5 57 103-164 2-58 (58)
44 2ecb_A Zinc fingers and homeob 99.7 5.4E-18 1.8E-22 131.1 5.6 58 109-171 17-74 (89)
45 3a02_A Homeobox protein arista 99.7 2.9E-18 1E-22 122.5 3.7 58 106-168 2-59 (60)
46 1b72_A Protein (homeobox prote 99.7 4.7E-18 1.6E-22 132.8 4.9 64 101-169 32-95 (97)
47 2da6_A Hepatocyte nuclear fact 99.7 1.5E-17 5E-22 131.4 7.2 72 100-172 3-91 (102)
48 2ecc_A Homeobox and leucine zi 99.7 8E-18 2.7E-22 126.4 5.2 59 106-169 6-64 (76)
49 1akh_A Protein (mating-type pr 99.7 4E-18 1.4E-22 122.0 3.4 59 101-164 3-61 (61)
50 3a03_A T-cell leukemia homeobo 99.7 7.8E-18 2.7E-22 118.8 4.4 54 108-166 2-55 (56)
51 2dn0_A Zinc fingers and homeob 99.7 6.5E-18 2.2E-22 126.3 4.1 62 103-169 8-69 (76)
52 1x2n_A Homeobox protein pknox1 99.7 1.9E-17 6.4E-22 122.8 5.9 64 101-169 5-71 (73)
53 2da5_A Zinc fingers and homeob 99.7 1.9E-17 6.6E-22 123.6 5.8 60 105-169 9-68 (75)
54 1b72_B Protein (PBX1); homeodo 99.7 1E-17 3.5E-22 128.1 4.2 63 104-171 2-67 (87)
55 2ly9_A Zinc fingers and homeob 99.7 1.4E-17 4.8E-22 123.6 4.7 63 102-169 5-67 (74)
56 2dmn_A Homeobox protein TGIF2L 99.7 4.4E-17 1.5E-21 124.1 7.2 66 102-171 6-73 (83)
57 3nar_A ZHX1, zinc fingers and 99.7 1E-17 3.5E-22 130.8 3.8 64 100-168 22-85 (96)
58 2dmp_A Zinc fingers and homeob 99.7 4.4E-17 1.5E-21 125.7 7.2 58 108-170 18-75 (89)
59 1puf_B PRE-B-cell leukemia tra 99.7 2.7E-17 9.1E-22 121.9 5.0 61 104-169 2-65 (73)
60 1du6_A PBX1, homeobox protein 99.7 2.5E-17 8.4E-22 119.0 3.0 58 103-165 3-63 (64)
61 1wi3_A DNA-binding protein SAT 99.7 5.8E-17 2E-21 118.6 4.7 61 99-164 3-64 (71)
62 1k61_A Mating-type protein alp 99.6 7.2E-17 2.5E-21 115.1 4.3 56 106-166 1-59 (60)
63 1lfb_A Liver transcription fac 99.6 2.9E-17 9.8E-22 129.3 1.6 71 99-170 5-92 (99)
64 1ic8_A Hepatocyte nuclear fact 99.6 2.5E-17 8.5E-22 144.1 0.6 140 12-165 30-193 (194)
65 2cqx_A LAG1 longevity assuranc 99.6 4.5E-17 1.5E-21 121.0 1.9 59 104-167 9-68 (72)
66 1mnm_C Protein (MAT alpha-2 tr 99.6 1.9E-16 6.4E-21 121.3 4.8 59 102-165 26-87 (87)
67 3nau_A Zinc fingers and homeob 99.6 2.3E-16 7.9E-21 115.1 4.1 53 110-167 11-63 (66)
68 1le8_B Mating-type protein alp 99.6 3.2E-16 1.1E-20 119.2 4.2 59 105-168 4-65 (83)
69 2l9r_A Homeobox protein NKX-3. 99.6 1.5E-16 5E-21 117.5 2.2 57 108-169 9-65 (69)
70 2e19_A Transcription factor 8; 99.6 3E-16 1E-20 114.0 2.7 54 107-165 7-60 (64)
71 1x2m_A LAG1 longevity assuranc 99.6 2.8E-16 9.6E-21 114.3 2.0 51 112-166 9-59 (64)
72 2d5v_A Hepatocyte nuclear fact 99.6 7.3E-16 2.5E-20 130.9 4.1 64 100-168 94-157 (164)
73 3k2a_A Homeobox protein MEIS2; 99.5 1E-14 3.4E-19 106.7 3.1 56 109-169 4-62 (67)
74 2h8r_A Hepatocyte nuclear fact 99.4 2.5E-13 8.5E-18 120.5 6.9 64 99-163 138-218 (221)
75 2da7_A Zinc finger homeobox pr 99.4 2.4E-13 8.1E-18 100.0 3.3 46 112-162 14-59 (71)
76 2lk2_A Homeobox protein TGIF1; 99.3 8.4E-13 2.9E-17 101.8 5.8 60 108-172 10-72 (89)
77 1mh3_A Maltose binding-A1 home 99.2 4.8E-12 1.6E-16 119.0 2.0 56 104-164 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 2.9E-09 1E-13 68.9 2.1 23 150-172 1-23 (37)
79 2ys9_A Homeobox and leucine zi 89.3 0.18 6.1E-06 36.7 2.1 38 115-157 18-55 (70)
80 2glo_A Brinker CG9653-PA; prot 60.2 6.7 0.00023 26.2 2.9 46 107-158 3-48 (59)
81 1hlv_A CENP-B, major centromer 59.2 9.5 0.00032 29.2 4.0 49 106-162 4-52 (131)
82 2elh_A CG11849-PA, LD40883P; s 58.5 8.1 0.00028 28.0 3.3 44 104-157 17-60 (87)
83 3hug_A RNA polymerase sigma fa 57.7 7.7 0.00026 28.2 3.1 49 110-168 38-86 (92)
84 2x7l_M HIV REV; nuclear export 55.1 7.9 0.00027 30.4 2.8 37 115-170 15-51 (115)
85 2rgt_A Fusion of LIM/homeobox 54.8 0.21 7.3E-06 41.3 -6.7 30 101-131 134-163 (169)
86 1tc3_C Protein (TC3 transposas 53.4 11 0.00037 23.0 2.9 40 109-158 5-44 (51)
87 1jko_C HIN recombinase, DNA-in 53.4 6.1 0.00021 24.6 1.7 43 109-161 5-47 (52)
88 2o8x_A Probable RNA polymerase 47.0 10 0.00035 25.4 2.1 47 109-165 15-61 (70)
89 3lph_A Protein REV; helix-loop 43.8 12 0.00041 27.0 2.1 37 115-170 18-54 (72)
90 1pdn_C Protein (PRD paired); p 38.5 1.1E+02 0.0038 22.1 7.3 44 109-157 75-125 (128)
91 3mzy_A RNA polymerase sigma-H 36.0 24 0.00081 27.1 3.0 49 109-168 109-157 (164)
92 1s7o_A Hypothetical UPF0122 pr 35.9 26 0.00088 26.8 3.1 48 109-166 22-69 (113)
93 1ku3_A Sigma factor SIGA; heli 33.6 26 0.00088 24.0 2.5 50 109-164 10-59 (73)
94 1p4w_A RCSB; solution structur 31.7 37 0.0013 25.3 3.3 45 107-162 32-76 (99)
95 2qko_A Possible transcriptiona 31.0 21 0.00072 28.7 2.0 44 115-164 34-77 (215)
96 2p7v_B Sigma-70, RNA polymeras 30.5 20 0.00069 24.2 1.5 50 109-164 5-54 (68)
97 2iai_A Putative transcriptiona 29.9 47 0.0016 27.0 4.0 43 113-161 34-76 (230)
98 1xsv_A Hypothetical UPF0122 pr 29.6 31 0.0011 26.3 2.6 48 110-167 26-73 (113)
99 3dcf_A Transcriptional regulat 28.6 35 0.0012 27.0 2.9 42 114-161 36-77 (218)
100 1fi6_A EH domain protein REPS1 28.5 30 0.001 24.7 2.2 45 108-156 1-49 (92)
101 2wl8_A Peroxisomal biogenesis 26.8 64 0.0022 25.6 4.0 28 40-67 50-77 (126)
102 1tty_A Sigma-A, RNA polymerase 26.4 29 0.001 24.8 1.8 50 109-164 18-67 (87)
103 3c57_A Two component transcrip 26.1 48 0.0016 24.1 3.0 47 108-165 26-72 (95)
104 3i5g_B Myosin regulatory light 25.9 1.1E+02 0.0037 23.8 5.3 41 106-150 6-50 (153)
105 2q24_A Putative TETR family tr 25.3 27 0.00091 27.6 1.6 42 113-161 19-60 (194)
106 2rnj_A Response regulator prot 25.3 36 0.0012 24.4 2.1 45 108-163 28-72 (91)
107 4ich_A Transcriptional regulat 25.3 13 0.00043 32.6 -0.5 41 115-161 126-166 (311)
108 2lv7_A Calcium-binding protein 25.0 89 0.003 22.8 4.4 47 106-156 26-78 (100)
109 1or7_A Sigma-24, RNA polymeras 24.8 39 0.0013 26.9 2.5 47 110-166 141-187 (194)
110 1rp3_A RNA polymerase sigma fa 24.0 43 0.0015 27.4 2.7 48 109-166 187-234 (239)
111 1fse_A GERE; helix-turn-helix 23.6 46 0.0016 22.2 2.3 46 107-163 9-54 (74)
112 2i10_A Putative TETR transcrip 23.1 43 0.0015 26.7 2.5 46 112-163 14-59 (202)
113 1c07_A Protein (epidermal grow 22.9 34 0.0012 24.6 1.6 45 108-156 2-50 (95)
114 1je8_A Nitrate/nitrite respons 22.6 36 0.0012 24.0 1.7 47 107-164 19-65 (82)
115 8tfv_A Protein (thanatin); bac 22.2 32 0.0011 18.6 0.9 15 148-162 2-16 (21)
116 2rn7_A IS629 ORFA; helix, all 21.9 76 0.0026 23.2 3.5 46 107-156 4-51 (108)
117 1iuf_A Centromere ABP1 protein 21.9 1.3E+02 0.0045 23.5 5.1 51 104-158 6-59 (144)
118 2jn6_A Protein CGL2762, transp 20.9 53 0.0018 23.6 2.3 43 107-157 3-45 (97)
119 3qp6_A CVIR transcriptional re 20.5 1.5E+02 0.0051 25.6 5.6 45 108-163 196-240 (265)
120 1u78_A TC3 transposase, transp 20.4 75 0.0026 23.8 3.2 41 108-158 5-45 (141)
No 1
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=100.00 E-value=2.3e-36 Score=258.68 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhhhhhhhhcCCCCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCC
Q 023479 6 IREAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRL 85 (281)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~~~~lr~qi~~~~~~c~~~~~~~k~ls~~~~~~~~g~~~ 85 (281)
..+|+++||++||||||++||+|++||.++|.+||++||+++|++|+++..++++||+..+.+.+|+............
T Consensus 11 ~~~~l~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~~- 89 (164)
T 2xsd_C 11 SSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTN- 89 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC--------
T ss_pred chhHHHHHHHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhccccCCCcc-
Confidence 4689999999999999999999999999999999999999999999999999999999999999999887654321111
Q ss_pred CCccCCCCCcCCCCCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHH
Q 023479 86 GNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (281)
Q Consensus 86 g~~~~~p~~~s~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr 165 (281)
.++ . ...+++||+|+.|+..|+.+||..|..+ +||+..+|.+||..| +|++++|+|||||||+|+||
T Consensus 90 ----~~~---~-~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr 156 (164)
T 2xsd_C 90 ----LDK---I-AAQGRKRKKRTSIEVGVKGALESHFLKC-PKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKR 156 (164)
T ss_dssp ------------------------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTB
T ss_pred ----ccc---c-cccccCCCCceeccHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhh
Confidence 111 1 1344678899999999999999999997 999999999999999 99999999999999999999
Q ss_pred Hhhh
Q 023479 166 KQLV 169 (281)
Q Consensus 166 ~~~~ 169 (281)
..+.
T Consensus 157 ~~~~ 160 (164)
T 2xsd_C 157 MTPA 160 (164)
T ss_dssp SCC-
T ss_pred ccCC
Confidence 7653
No 2
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=100.00 E-value=4.8e-36 Score=254.31 Aligned_cols=151 Identities=18% Similarity=0.223 Sum_probs=130.0
Q ss_pred CcchHHHHHHHHHHhhhhhhhhcCCCCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q 023479 2 EWDNIREAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAA 81 (281)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~~~~lr~qi~~~~~~c~~~~~~~k~ls~~~~~~~~ 81 (281)
+-+...+++++||+.|+||||++||||+|||.|+|.+||++||+++|++|++...+|++||+..+.+.+|+.........
T Consensus 4 d~~~~~~~l~~fa~~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~ 83 (155)
T 3l1p_A 4 DMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNENL 83 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cchhhHHHHHHHHHHHHhhhheecccHHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHHHHhhhhhcccCc
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999876632110
Q ss_pred CCCCCCccCCCCCcCCCCCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhh
Q 023479 82 GGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (281)
Q Consensus 82 g~~~g~~~~~p~~~s~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRa 161 (281)
... ..... ..+++||.|+.|+..|+..||..|..+ +||+..+|.+||..| ||++++|+|||||||+
T Consensus 84 ~~~---~~~~~------~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~ 149 (155)
T 3l1p_A 84 QEI---SKSET------LVQARKRKRTSIENRVRWSLETMFLKS-PKPSLQQITHIANQL----GLEKDVVRVWFSNRRQ 149 (155)
T ss_dssp HHS---SCC---------CCCSCCCCCCCCHHHHHHHHTTTTTC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHH
T ss_pred ccc---ccccc------cccCCCCCCcccCHHHHHHHHHHHccC-CCCCHHHHHHHHHHc----CCChhheeeccccccc
Confidence 000 00000 113567789999999999999999997 999999999999999 9999999999999999
Q ss_pred HHHHH
Q 023479 162 RSKRK 166 (281)
Q Consensus 162 K~Kr~ 166 (281)
|+||.
T Consensus 150 k~Kr~ 154 (155)
T 3l1p_A 150 KGKRS 154 (155)
T ss_dssp HHHC-
T ss_pred cccCC
Confidence 99984
No 3
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=100.00 E-value=5.9e-36 Score=251.51 Aligned_cols=143 Identities=21% Similarity=0.270 Sum_probs=122.8
Q ss_pred HHHHHHHHhhhhhhhhcCCCCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCCC
Q 023479 8 EAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGN 87 (281)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~~~~lr~qi~~~~~~c~~~~~~~k~ls~~~~~~~~g~~~g~ 87 (281)
+++++||++|+||||++||||+|||.|+|.+||+++|+++|++|+++..++++||++.+.+.+|+.........
T Consensus 3 ~~l~~fa~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~~------ 76 (146)
T 1au7_A 3 RALEQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGAL------ 76 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC----------
T ss_pred cHHHHHHHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhcccCc------
Confidence 68899999999999999999999999999999999999999999999999999999999999998887654311
Q ss_pred ccCCCCCcCCCCCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHH
Q 023479 88 IYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (281)
Q Consensus 88 ~~~~p~~~s~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~ 166 (281)
... ..+..+++||.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+||+
T Consensus 77 -~~~----~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 77 -YNE----KVGANERKRKRRTTISIAAKDALERHFGEH-SKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----------------CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred -cCc----ccCCCCCCCCCCcCccHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 011 111344667889999999999999999997 999999999999999 999999999999999999985
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=100.00 E-value=4e-35 Score=247.38 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=129.2
Q ss_pred HHHHHHHHHhhhhhhhhcCCCCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCC
Q 023479 7 REAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLG 86 (281)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~~~~lr~qi~~~~~~c~~~~~~~k~ls~~~~~~~~g~~~g 86 (281)
.|++++||++|+||||++||||++||.|+|.+||+++|+++|++|++...++++||+..+.+.+|+.........+....
T Consensus 3 ~~~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~~~ 82 (151)
T 3d1n_I 3 MEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNL 82 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCcccc
Confidence 48899999999999999999999999999999999999999999999999999999999999999988765432222111
Q ss_pred CccCCCCCcCCCCCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHH
Q 023479 87 NIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (281)
Q Consensus 87 ~~~~~p~~~s~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr 165 (281)
... ..+...++||.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+||
T Consensus 83 ~~~------~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 83 MEF------VGGEPSKKRKRRTSFTPQAIEALNAYFEKN-PLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp HHH------HCSSCCCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred ccc------CCCCCCCCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 110 111334667889999999999999999997 999999999999999 99999999999999999986
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.98 E-value=6e-34 Score=242.53 Aligned_cols=154 Identities=17% Similarity=0.193 Sum_probs=122.0
Q ss_pred HHHHHHHHHhhhhhhhhcCCCCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCCC
Q 023479 7 REAAQQETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLG 86 (281)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~~~~lr~qi~~~~~~c~~~~~~~k~ls~~~~~~~~g~~~g 86 (281)
-+|+++|++.|+++|+++|++|++||.++|.+||+++++++|++|+++..++++||+..+.+.+||.............+
T Consensus 6 ~~~~~~~~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~~~~~~~~ 85 (160)
T 1e3o_C 6 LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLS 85 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcchhHHHHHHhhhcccccCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999987764322111111
Q ss_pred CccCCCCCcCCCCCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHH
Q 023479 87 NIYCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (281)
Q Consensus 87 ~~~~~p~~~s~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~ 166 (281)
...+....... +..++||.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+||+
T Consensus 86 s~~~~~~~~~~-~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 86 SPSALNSPGIE-GLSRRRKKRTSIETNIRVALEKSFMEN-QKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -------------------CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCCCCCC-CCCCCCcCccccCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 11111111111 334678899999999999999999997 999999999999999 999999999999999999985
No 6
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=8e-20 Score=137.98 Aligned_cols=65 Identities=31% Similarity=0.523 Sum_probs=60.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhh
Q 023479 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (281)
Q Consensus 101 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~ 170 (281)
++.||.|+.|+.+|+.+||.+|..+ +||+..+|.+||..| +|++++|+|||||||+|+|+..+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKT-RYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 4568899999999999999999997 999999999999999 9999999999999999999987654
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-19 Score=135.77 Aligned_cols=66 Identities=24% Similarity=0.393 Sum_probs=61.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhhc
Q 023479 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (281)
Q Consensus 101 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~~ 171 (281)
...||.|+.|+.+|+.+||.+|..+ +||+..++.+||..| +|++.+|+|||||||+|+||+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAIN-HNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 3568889999999999999999997 999999999999999 99999999999999999999876543
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.1e-19 Score=135.80 Aligned_cols=67 Identities=24% Similarity=0.432 Sum_probs=62.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhhcc
Q 023479 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSS 172 (281)
Q Consensus 101 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~~~ 172 (281)
...+|.|+.|+..|+.+||.+|..+ +||+..++.+||..| +|++.+|+|||||||+|+|+..+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~~~ 71 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERT-HYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKLRNQ 71 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhhhhc
Confidence 3567889999999999999999997 999999999999999 999999999999999999998877544
No 9
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.77 E-value=4.2e-19 Score=133.16 Aligned_cols=66 Identities=26% Similarity=0.275 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 99 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
+.+..+|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++++|+|||||||+|+|+..+.
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFN-MYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhhh
Confidence 455678899999999999999999997 999999999999999 999999999999999999998765
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.77 E-value=4.1e-19 Score=133.26 Aligned_cols=67 Identities=27% Similarity=0.265 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhh
Q 023479 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (281)
Q Consensus 99 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~ 170 (281)
..++.+|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++++|+|||||||+|+|+.....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQ-RYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhccc
Confidence 455678889999999999999999997 999999999999999 9999999999999999999987754
No 11
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-19 Score=135.02 Aligned_cols=65 Identities=29% Similarity=0.342 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 99 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
..++.+|.|+.|+..|+.+||.+|..+ +||+..+|.+||..| +|++++|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQ-KYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhcccC
Confidence 345678899999999999999999997 999999999999999 99999999999999999998654
No 12
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-19 Score=134.83 Aligned_cols=65 Identities=31% Similarity=0.450 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 99 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
...+.+|.|+.|+.+|+.+||.+|..+ +||+..++.+||..| +|++.+|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLD-SNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhcc
Confidence 345678899999999999999999997 999999999999999 99999999999999999999654
No 13
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.76 E-value=2.7e-19 Score=135.63 Aligned_cols=72 Identities=29% Similarity=0.409 Sum_probs=55.9
Q ss_pred CCCcCCCCCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 92 PLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 92 p~~~s~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
|.+...+.....+|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+||..+
T Consensus 9 p~~~~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 9 PWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHTN-HYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp TTCC-----------CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CccccCCCCCCCCCCCcccCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhcc
Confidence 3333333445678899999999999999999997 999999999999999 99999999999999999998654
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-19 Score=130.34 Aligned_cols=62 Identities=29% Similarity=0.452 Sum_probs=58.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 102 ~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
..+|.|+.|+.+|+.+||.+|..+ +||+..++.+||..| +|++.+|+|||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQET-KYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CCCHHHeehccccccccccccCC
Confidence 467889999999999999999997 999999999999999 99999999999999999999754
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-19 Score=130.84 Aligned_cols=63 Identities=25% Similarity=0.432 Sum_probs=59.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 101 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
.+.+|.|+.|+.+|+.+||.+|..+ +||+..++.+||..| ||++.+|++||||||+|+|+..+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDIN-NSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhcc
Confidence 3568899999999999999999997 999999999999999 99999999999999999999754
No 16
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=2.9e-19 Score=131.66 Aligned_cols=63 Identities=27% Similarity=0.394 Sum_probs=58.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 101 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
...||.|+.|+..|+.+||..|..+ +||+..++.+||..| +|++.+|+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAAN-KFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccCC
Confidence 4567889999999999999999997 999999999999999 99999999999999999998654
No 17
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-19 Score=131.15 Aligned_cols=64 Identities=22% Similarity=0.417 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 100 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
..+.+|.|+.|+..|+.+||.+|..+ +||+..++.+||..| ||++.+|++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDAN-AYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhccc
Confidence 34568899999999999999999997 999999999999999 99999999999999999998654
No 18
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.75 E-value=2.9e-19 Score=128.58 Aligned_cols=61 Identities=31% Similarity=0.411 Sum_probs=53.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHh
Q 023479 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (281)
Q Consensus 102 ~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~ 167 (281)
+.+|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQ-KYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 357889999999999999999997 999999999999999 9999999999999999999863
No 19
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.75 E-value=5.8e-19 Score=127.45 Aligned_cols=60 Identities=33% Similarity=0.425 Sum_probs=55.9
Q ss_pred CCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHh
Q 023479 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (281)
Q Consensus 103 ~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~ 167 (281)
.+|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFN-KYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 57889999999999999999997 999999999999999 9999999999999999999863
No 20
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.75 E-value=5.9e-19 Score=129.43 Aligned_cols=62 Identities=31% Similarity=0.375 Sum_probs=58.8
Q ss_pred CCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 103 ~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
++|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++++|+|||||||+|+|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN-RYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccC-CCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhccc
Confidence 47889999999999999999997 999999999999999 999999999999999999998764
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=1e-18 Score=128.04 Aligned_cols=63 Identities=30% Similarity=0.420 Sum_probs=59.6
Q ss_pred CCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhh
Q 023479 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (281)
Q Consensus 103 ~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~ 170 (281)
+||.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQG-RYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhccc
Confidence 57889999999999999999997 999999999999999 9999999999999999999987754
No 22
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=7.7e-19 Score=133.53 Aligned_cols=65 Identities=31% Similarity=0.367 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 99 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
...+.+|.|+.|+..|+.+||.+|..+ +||+..+|.+||..| ||++++|+|||||||+|+||..+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQ-KYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHhh
Confidence 445678899999999999999999997 999999999999999 99999999999999999998764
No 23
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.3e-18 Score=128.11 Aligned_cols=62 Identities=31% Similarity=0.318 Sum_probs=58.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 102 ~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
..++.|+.|+.+|+.+||..|..+ +||+..++.+||..| +|++.+|++||||||+|+|+...
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQ-KYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCCC
Confidence 457789999999999999999997 999999999999999 99999999999999999999765
No 24
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.74 E-value=7.6e-19 Score=125.95 Aligned_cols=58 Identities=26% Similarity=0.474 Sum_probs=53.0
Q ss_pred CCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHH
Q 023479 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (281)
Q Consensus 103 ~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr 165 (281)
.+|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNEN-RYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 47889999999999999999997 999999999999999 99999999999999999987
No 25
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.74 E-value=8.8e-19 Score=132.78 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhh----cCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHH
Q 023479 99 GHKISARQRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (281)
Q Consensus 99 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~----~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr 165 (281)
+.++.||.||.|+.+|+.+||..|+. + +||+..+|.+||..| +|++++|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~-~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRI-QRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCC-CTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcC-CCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 34567889999999999999999999 8 999999999999999 99999999999999999875
No 26
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.74 E-value=1.4e-18 Score=131.43 Aligned_cols=65 Identities=29% Similarity=0.460 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 100 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
.++.+|.|+.|+..|+.+||.+|..+ +||+..++.+||..| ||++.+|++||||||+|+|++...
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERT-QYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhccc
Confidence 45678899999999999999999997 999999999999999 999999999999999999998653
No 27
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=1.1e-18 Score=123.66 Aligned_cols=57 Identities=40% Similarity=0.489 Sum_probs=55.0
Q ss_pred CCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHH
Q 023479 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (281)
Q Consensus 104 rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr 165 (281)
||.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK-QYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 5789999999999999999997 999999999999999 99999999999999999997
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=1.3e-18 Score=127.51 Aligned_cols=63 Identities=25% Similarity=0.314 Sum_probs=59.2
Q ss_pred CCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhh
Q 023479 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (281)
Q Consensus 103 ~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~ 170 (281)
+||.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQ-KYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 47889999999999999999997 999999999999999 9999999999999999999987643
No 29
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.6e-19 Score=130.08 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=58.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 101 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
...+|.|+.|+..|+.+||.+|..+ +||+..++.+||..| +|++.+|++||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKT-QYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccCC
Confidence 3567889999999999999999997 999999999999999 99999999999999999998653
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.74 E-value=1.4e-18 Score=129.13 Aligned_cols=65 Identities=31% Similarity=0.369 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 100 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
....+|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATN-KFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHT-SCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhC-CCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHHhcc
Confidence 34568889999999999999999997 999999999999999 999999999999999999997654
No 31
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.4e-18 Score=134.08 Aligned_cols=65 Identities=31% Similarity=0.518 Sum_probs=61.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCC---------------CccccccccccchhhHHHH
Q 023479 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ---------------ISETNVYNWFQNRRARSKR 165 (281)
Q Consensus 101 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~g---------------Lse~qV~vWFQNRRaK~Kr 165 (281)
.+.+|.|+.|++.|+.+||.+|..+ +||+..+|.+||..| + |++.+|++||||||+|+|+
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~-~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNEN-QYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999997 999999999999999 8 9999999999999999999
Q ss_pred Hhhhh
Q 023479 166 KQLVS 170 (281)
Q Consensus 166 ~~~~~ 170 (281)
+....
T Consensus 80 ~~~~~ 84 (95)
T 2cuf_A 80 RANIA 84 (95)
T ss_dssp HHHCC
T ss_pred Hhhcc
Confidence 88763
No 32
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.73 E-value=8.9e-19 Score=128.31 Aligned_cols=64 Identities=34% Similarity=0.469 Sum_probs=59.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhh
Q 023479 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (281)
Q Consensus 102 ~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~ 170 (281)
+.+|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|+..+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRN-RYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTC-SSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 357889999999999999999997 999999999999999 9999999999999999999987653
No 33
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.73 E-value=2.8e-18 Score=133.40 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhhc
Q 023479 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (281)
Q Consensus 99 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~~ 171 (281)
...+.+|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+|+......
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQ-KYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHHHH
Confidence 344567889999999999999999997 999999999999999 99999999999999999999876543
No 34
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.73 E-value=1.9e-18 Score=123.47 Aligned_cols=58 Identities=34% Similarity=0.468 Sum_probs=55.1
Q ss_pred CCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHH
Q 023479 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (281)
Q Consensus 104 rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~ 166 (281)
||.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKE-NYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 6789999999999999999997 999999999999999 999999999999999999984
No 35
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.73 E-value=1.5e-18 Score=131.59 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhh-----cCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHH
Q 023479 99 GHKISARQRWTPTPVQLQILESIFDQ-----GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (281)
Q Consensus 99 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~-----~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr 165 (281)
...+.||.||.|+.+|+.+|| .|.. + +||+..+|.+||..| +|++++|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~-~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRI-QKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCC-CSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCC-CCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 345678899999999999999 7999 8 999999999999999 99999999999999999875
No 36
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=1.2e-18 Score=126.88 Aligned_cols=62 Identities=21% Similarity=0.374 Sum_probs=58.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 102 ~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
+.+|.|+.|+.+|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAAN-PRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHhh
Confidence 357889999999999999999997 999999999999999 99999999999999999998653
No 37
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-18 Score=130.53 Aligned_cols=66 Identities=23% Similarity=0.379 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhhcC----CCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 99 GHKISARQRWTPTPVQLQILESIFDQGT----GTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 99 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~----~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
+.++.+|.|+.|+.+|+.+||.+|.. + +||+..+|.+||..| ||++.+|+|||||||+|+|+....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~-~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDN-GMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTT-TTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhccCC
Confidence 44567889999999999999999999 5 899999999999999 999999999999999999996544
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=5e-18 Score=126.04 Aligned_cols=61 Identities=28% Similarity=0.425 Sum_probs=57.3
Q ss_pred CCCCCCCChHHHHHHHHHHhh-cCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 104 ARQRWTPTPVQLQILESIFDQ-GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 104 rr~Rt~ft~~Ql~~LE~~F~~-~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
++.|+.|+..|+.+||..|.. + +||+..+|.+||..| ||++++|++||||||+|+|+....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTT-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhccC
Confidence 567899999999999999995 7 999999999999999 999999999999999999998754
No 39
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-18 Score=127.44 Aligned_cols=65 Identities=29% Similarity=0.464 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 100 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
.++.+|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|++.+.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKT-HYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHhh
Confidence 34567889999999999999999997 999999999999999 999999999999999999997664
No 40
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.72 E-value=1.8e-18 Score=132.87 Aligned_cols=63 Identities=30% Similarity=0.388 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHh
Q 023479 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (281)
Q Consensus 100 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~ 167 (281)
....+|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+||..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFN-RYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 34568899999999999999999997 999999999999999 9999999999999999999864
No 41
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=4.8e-18 Score=125.72 Aligned_cols=61 Identities=26% Similarity=0.377 Sum_probs=57.1
Q ss_pred CCCCCCCChHHHHHHHHHHhh-cCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 104 ARQRWTPTPVQLQILESIFDQ-GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 104 rr~Rt~ft~~Ql~~LE~~F~~-~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
.+.|+.|+..|+.+||..|.. + +||+..+|.+||..| ||++++|+|||||||+|+|+....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccCCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhccC
Confidence 457899999999999999996 7 999999999999999 999999999999999999998754
No 42
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-18 Score=125.46 Aligned_cols=61 Identities=30% Similarity=0.488 Sum_probs=57.9
Q ss_pred CCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 104 rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
||.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVN-CYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhchh
Confidence 6789999999999999999997 999999999999999 999999999999999999987654
No 43
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.71 E-value=3.9e-18 Score=120.39 Aligned_cols=57 Identities=32% Similarity=0.393 Sum_probs=54.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHH
Q 023479 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (281)
Q Consensus 103 ~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~K 164 (281)
++|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQ-RYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 46789999999999999999997 999999999999999 9999999999999999975
No 44
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=5.4e-18 Score=131.07 Aligned_cols=58 Identities=14% Similarity=0.353 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhhc
Q 023479 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (281)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~~ 171 (281)
.||.+||.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|||++.....
T Consensus 17 ~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNS-SVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred cCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHHHhh
Confidence 78999999999999997 999999999999999 99999999999999999998766543
No 45
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.71 E-value=2.9e-18 Score=122.49 Aligned_cols=58 Identities=29% Similarity=0.497 Sum_probs=50.3
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 106 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
+|+.||..|+.+||..|..+ +||+..++.+||..| ||++++|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT-HYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhcc
Confidence 58999999999999999997 999999999999999 99999999999999999998764
No 46
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=4.7e-18 Score=132.85 Aligned_cols=64 Identities=33% Similarity=0.392 Sum_probs=56.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 101 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
...++.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+|+..+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFN-KYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhcc
Confidence 4567889999999999999999997 999999999999999 999999999999999999998764
No 47
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=131.41 Aligned_cols=72 Identities=33% Similarity=0.555 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHH-------------hcC----CCccccccccccchhhH
Q 023479 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELS-------------QHG----QISETNVYNWFQNRRAR 162 (281)
Q Consensus 100 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~-------------~~~----gLse~qV~vWFQNRRaK 162 (281)
.++.||.|+.|++.|+.+||.+|+.+ +||+..+|++||..|. .|+ .|++.+|+|||||||++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~-~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 34678899999999999999999997 9999999999999993 233 68999999999999999
Q ss_pred HHHHhhhhcc
Q 023479 163 SKRKQLVSSS 172 (281)
Q Consensus 163 ~Kr~~~~~~~ 172 (281)
+|++.+....
T Consensus 82 ~kr~~~~~~~ 91 (102)
T 2da6_A 82 EAFRQKLAMD 91 (102)
T ss_dssp HHHHHHHHHS
T ss_pred HHHhhHhhhc
Confidence 9998877544
No 48
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=8e-18 Score=126.39 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=55.2
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 106 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
.|..||.+||.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+|+....
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~-~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQC-QWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHHHH
Confidence 46679999999999999997 999999999999999 999999999999999999987654
No 49
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.70 E-value=4e-18 Score=121.97 Aligned_cols=59 Identities=25% Similarity=0.423 Sum_probs=48.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHH
Q 023479 101 KISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (281)
Q Consensus 101 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~K 164 (281)
++.+|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~-~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRK-QSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 3567889999999999999999997 999999999999999 9999999999999999975
No 50
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.70 E-value=7.8e-18 Score=118.83 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=50.7
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHH
Q 023479 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (281)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~ 166 (281)
|.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQ-KYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhc-CCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999997 999999999999999 999999999999999999985
No 51
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.5e-18 Score=126.35 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=57.6
Q ss_pred CCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 103 SARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 103 ~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
..+.|+.|+.+|+.+||..|..+ +||+..+|.+||..| ||++++|++||||||+|+|+....
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRN-QFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHS-SSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCccCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhccc
Confidence 45568999999999999999997 999999999999999 999999999999999999997654
No 52
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.9e-17 Score=122.76 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=58.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhh---cCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 101 KISARQRWTPTPVQLQILESIFDQ---GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 101 ~~~rr~Rt~ft~~Ql~~LE~~F~~---~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
++.++.|+.|+..|+.+||..|.. + +||+..++.+||..| ||++.+|++||||||+|+|+....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGH-PYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccccc
Confidence 456788999999999999999986 6 999999999999999 999999999999999999987653
No 53
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=123.63 Aligned_cols=60 Identities=23% Similarity=0.451 Sum_probs=55.9
Q ss_pred CCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 105 RQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 105 r~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
++|..||.+|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+|++.+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQN-PLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhhhc
Confidence 456679999999999999997 999999999999999 999999999999999999997654
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.69 E-value=1e-17 Score=128.12 Aligned_cols=63 Identities=27% Similarity=0.364 Sum_probs=57.9
Q ss_pred CCCCCCCChHHHHHHHHHH---hhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhhc
Q 023479 104 ARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (281)
Q Consensus 104 rr~Rt~ft~~Ql~~LE~~F---~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~~ 171 (281)
||.|+.|+..|+.+||.+| ..+ +||+..++.+||..| ||++.+|++||||||+|+|+......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~-~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTS-CCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhcccccc
Confidence 6789999999999999999 786 999999999999999 99999999999999999999776543
No 55
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=123.64 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=58.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 102 ISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 102 ~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
..++.|+.|+.+|+.+||..|..+ +||+..++.+||..| ||++++|++||||||+|+||....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKN-QFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCcC
Confidence 457789999999999999999997 999999999999999 999999999999999999987653
No 56
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=124.08 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=59.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhc--CCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhhc
Q 023479 102 ISARQRWTPTPVQLQILESIFDQG--TGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSS 171 (281)
Q Consensus 102 ~~rr~Rt~ft~~Ql~~LE~~F~~~--~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~~ 171 (281)
+.+++|+.|+.+|+.+||.+|..+ ++||+..++.+||..| ||++.+|+|||||||+|+|+......
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~~~~~ 73 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDMLQQR 73 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHHTCCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHHHHhc
Confidence 457789999999999999999872 3999999999999999 99999999999999999998766543
No 57
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.68 E-value=1e-17 Score=130.78 Aligned_cols=64 Identities=27% Similarity=0.396 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 100 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
....+|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|++||||||+|+||...
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRT-QWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhcc
Confidence 34567789999999999999999997 999999999999999 99999999999999999998653
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=125.66 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=54.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhh
Q 023479 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (281)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~ 170 (281)
..||.+||.+||..|..+ +||+..+|.+||..| +|++++|+|||||||+|+|+.....
T Consensus 18 k~~t~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKS-SFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred ccCCHHHHHHHHHHHccC-CCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHhHhh
Confidence 348999999999999997 999999999999999 9999999999999999999877654
No 59
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.68 E-value=2.7e-17 Score=121.92 Aligned_cols=61 Identities=28% Similarity=0.390 Sum_probs=57.4
Q ss_pred CCCCCCCChHHHHHHHHHH---hhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 104 ARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 104 rr~Rt~ft~~Ql~~LE~~F---~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
||.|+.|+..|+.+||..| ..+ +||+..++..||..| ||++.+|++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccccccc
Confidence 6789999999999999999 786 999999999999999 999999999999999999987654
No 60
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=2.5e-17 Score=119.03 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=54.9
Q ss_pred CCCCCCCCChHHHHHHHHHH---hhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHH
Q 023479 103 SARQRWTPTPVQLQILESIF---DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (281)
Q Consensus 103 ~rr~Rt~ft~~Ql~~LE~~F---~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr 165 (281)
.++.|+.|+..|+.+||..| ..+ +||+..++.+||..| ||++.+|++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999 786 999999999999999 99999999999999999986
No 61
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=5.8e-17 Score=118.61 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhh-cCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHH
Q 023479 99 GHKISARQRWTPTPVQLQILESIFDQ-GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (281)
Q Consensus 99 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~-~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~K 164 (281)
+.+.++|.||.|+.+||.+|+.+|.. + +||+.+.|..||.+| ||++++|+|||||||.--+
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~-~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVG-LYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CCCHHHHHHhhccceeeec
Confidence 44567899999999999999999999 8 999999999999999 9999999999999997643
No 62
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.65 E-value=7.2e-17 Score=115.12 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=53.1
Q ss_pred CCCCCChHHHHHHHHHHhh---cCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHH
Q 023479 106 QRWTPTPVQLQILESIFDQ---GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (281)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~---~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~ 166 (281)
+|+.|+.+|+.+||..|.. + +||+..++.+||..+ ||++.+|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHcccccC
Confidence 3689999999999999999 7 999999999999999 999999999999999999873
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.64 E-value=2.9e-17 Score=129.35 Aligned_cols=71 Identities=28% Similarity=0.469 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhc--------------CC---Cccccccccccchhh
Q 023479 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQH--------------GQ---ISETNVYNWFQNRRA 161 (281)
Q Consensus 99 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~--------------~g---Lse~qV~vWFQNRRa 161 (281)
..++.||.|+.|++.|+.+||..|..+ +||+..+|.+||..|... .| |++.+|+|||||||+
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~-~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 345678899999999999999999997 999999999999993100 18 999999999999999
Q ss_pred HHHHHhhhh
Q 023479 162 RSKRKQLVS 170 (281)
Q Consensus 162 K~Kr~~~~~ 170 (281)
++|++.+..
T Consensus 84 k~k~k~~~~ 92 (99)
T 1lfb_A 84 EEAFRHKLA 92 (99)
T ss_dssp TTSCCC---
T ss_pred HHHHhchhh
Confidence 998876543
No 64
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.63 E-value=2.5e-17 Score=144.14 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=86.3
Q ss_pred HHHHhhhhhhhhcCCCCCCCcccCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh--hh-cCCCCCCc
Q 023479 12 QETQTQNQNQNQRGGENDNNNVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDL--AA-AGGRLGNI 88 (281)
Q Consensus 12 ~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~~~~lr~qi~~~~~~c~~~~~~~k~ls~~~~~--~~-~g~~~g~~ 88 (281)
.++...+-.+++.|++|.++.-..| +|+..|+++..........+. ..+..|+...+.. .. +....+..
T Consensus 30 ~l~~~Ik~~l~~~gitQ~~lA~~~G------iSqs~ISr~l~~~~~~~~~kr--aaly~W~~~~~~~i~~~~~~~~~~~~ 101 (194)
T 1ic8_A 30 RVAKMVKSYLQQHNIPQREVVDTTG------LNQSHLSQHLNKGTPMKTQKR--AALYTWYVRKQREVAQQFTHAGQGGL 101 (194)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHC------CCHHHHHHHHHSBCCCCHHHH--HHHHHHHHHHTTTTHHHHCCC-----
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhC------CChHHHHHHHhcCcccccccc--ccchhhHHHhhhhhhccccCCCCCCC
Confidence 4455666778899999999876664 788888888543222222221 1223332222110 00 00000111
Q ss_pred cCCCCCcCCCCCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCC---------------------C
Q 023479 89 YCDPLMTSGGGHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ---------------------I 147 (281)
Q Consensus 89 ~~~p~~~s~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~g---------------------L 147 (281)
. .+........++.||.|+.|++.|+.+||+.|..+ +||+..+|.+||..| + |
T Consensus 102 ~-~~~~~~~~~~~k~rr~R~~ft~~ql~~Le~~F~~~-~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~~~l 175 (194)
T 1ic8_A 102 I-EEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGSNLV 175 (194)
T ss_dssp ----------------CCCCCCCHHHHHHHHHHHHHH-CCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGGGCC
T ss_pred C-CCCcccccccccCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----Cchhhcccccccccccccccccc
Confidence 1 11111111445678899999999999999999997 999999999999999 8 9
Q ss_pred ccccccccccchhhHHHH
Q 023479 148 SETNVYNWFQNRRARSKR 165 (281)
Q Consensus 148 se~qV~vWFQNRRaK~Kr 165 (281)
++.+|++||||||+++|.
T Consensus 176 te~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 176 TEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp CHHHHHHHHHHHHHHCC-
T ss_pred Cccccchhchhhhhhhhc
Confidence 999999999999999875
No 65
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=4.5e-17 Score=121.00 Aligned_cols=59 Identities=20% Similarity=0.374 Sum_probs=53.0
Q ss_pred CCCCCCCChHHHHHHHHHH-hhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHh
Q 023479 104 ARQRWTPTPVQLQILESIF-DQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (281)
Q Consensus 104 rr~Rt~ft~~Ql~~LE~~F-~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~ 167 (281)
.+.|..++.+|+.+||..| ..+ +||+..+|.+||..| ||++++|+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~-~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVT-KYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCCCC
Confidence 3455667788999999999 886 999999999999999 9999999999999999999743
No 66
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.62 E-value=1.9e-16 Score=121.31 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=55.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHhh---cCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHH
Q 023479 102 ISARQRWTPTPVQLQILESIFDQ---GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (281)
Q Consensus 102 ~~rr~Rt~ft~~Ql~~LE~~F~~---~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr 165 (281)
.++++|+.|+.+|+.+||.+|.. + +||+..++.+||..| ||++++|++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccC
Confidence 35667899999999999999999 8 999999999999999 99999999999999999873
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.61 E-value=2.3e-16 Score=115.08 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=50.1
Q ss_pred CChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHh
Q 023479 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (281)
Q Consensus 110 ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~ 167 (281)
-|.+||.+||..|..+ +||+..+|.+||..| ||++++|++||||||+|+|+..
T Consensus 11 ~~~~Ql~~LE~~F~~~-~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQS-QFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGG-GSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 3689999999999997 999999999999999 9999999999999999999854
No 68
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.60 E-value=3.2e-16 Score=119.17 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=54.2
Q ss_pred CCCCCCChHHHHHHHHHHhh---cCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 105 RQRWTPTPVQLQILESIFDQ---GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 105 r~Rt~ft~~Ql~~LE~~F~~---~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
++|+.|+..|+.+||.+|.. + +||+..++.+||..| ||++.+|++||||||+|+|+...
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~-~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHHH----CCCHHHcccccHHHHcccccccc
Confidence 44666999999999999999 8 999999999999999 99999999999999999998644
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-16 Score=117.45 Aligned_cols=57 Identities=35% Similarity=0.445 Sum_probs=53.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
...+..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+||+...
T Consensus 9 ~~~t~~ql~~LE~~F~~~-~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQ-KYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhhh
Confidence 467899999999999997 999999999999999 999999999999999999987653
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3e-16 Score=114.02 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=50.1
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHH
Q 023479 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (281)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr 165 (281)
+..++..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALN-AQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 3456799999999999997 999999999999999 99999999999999998776
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=2.8e-16 Score=114.27 Aligned_cols=51 Identities=24% Similarity=0.493 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHH
Q 023479 112 PVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (281)
Q Consensus 112 ~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~ 166 (281)
+.++.+||+.|...++||+..+|.+||.+| +|+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCCC
Confidence 457999999995423999999999999999 999999999999999999863
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.57 E-value=7.3e-16 Score=130.91 Aligned_cols=64 Identities=33% Similarity=0.400 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 100 HKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 100 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
..+.||.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKEN-KRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccCC
Confidence 34568899999999999999999997 999999999999999 99999999999999999888543
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=1e-14 Score=106.69 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=50.1
Q ss_pred CCChHHHHHHHHHHh---hcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhh
Q 023479 109 TPTPVQLQILESIFD---QGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLV 169 (281)
Q Consensus 109 ~ft~~Ql~~LE~~F~---~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~ 169 (281)
.|+.+|+.+||..|. .+ +||+..++.+||..+ ||++.+|++||||||+|+|+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~-pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTH-PYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHHHH
Confidence 689999999999999 86 999999999999999 999999999999999999986554
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.40 E-value=2.5e-13 Score=120.54 Aligned_cols=64 Identities=33% Similarity=0.557 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh-----------------cCCCccccccccccchhh
Q 023479 99 GHKISARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQ-----------------HGQISETNVYNWFQNRRA 161 (281)
Q Consensus 99 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~-----------------~~gLse~qV~vWFQNRRa 161 (281)
..++.||.|+.|++.|+.+||.+|..+ +||+..+|++||..|.. ...|++.+|++||||||+
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~-~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 556788999999999999999999997 99999999999999821 012899999999999998
Q ss_pred HH
Q 023479 162 RS 163 (281)
Q Consensus 162 K~ 163 (281)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 64
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.4e-13 Score=99.96 Aligned_cols=46 Identities=15% Similarity=0.473 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhH
Q 023479 112 PVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162 (281)
Q Consensus 112 ~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK 162 (281)
.+|+.+||.+|..| ++|+.+++..||..+ ||++++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n-~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMN-MEPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 57899999999997 999999999999999 99999999999999974
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.35 E-value=8.4e-13 Score=101.75 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=54.3
Q ss_pred CCCChHHHHHHHHHHhh---cCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhhcc
Q 023479 108 WTPTPVQLQILESIFDQ---GTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSS 172 (281)
Q Consensus 108 t~ft~~Ql~~LE~~F~~---~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~~~ 172 (281)
..|+.+++.+|+..|.. + +||+..++.+||..+ ||++.||.+||+|||.|.++.......
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~n-pYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~~~~~~~ 72 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYN-AYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPDMLRKDG 72 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGG-GSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhHHHHhcC
Confidence 46889999999999987 6 999999999999999 999999999999999999987765433
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.17 E-value=4.8e-12 Score=118.97 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=52.6
Q ss_pred CCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHH
Q 023479 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (281)
Q Consensus 104 rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~K 164 (281)
++.|+.++..|+..||+.|..+ +||+..+|.+||.+| ||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~-~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRK-QSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcC-CCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 4567889999999999999997 999999999999999 9999999999999999975
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.74 E-value=2.9e-09 Score=68.93 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.2
Q ss_pred ccccccccchhhHHHHHhhhhcc
Q 023479 150 TNVYNWFQNRRARSKRKQLVSSS 172 (281)
Q Consensus 150 ~qV~vWFQNRRaK~Kr~~~~~~~ 172 (281)
+||+|||||||+||||+......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 58999999999999999887544
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.30 E-value=0.18 Score=36.67 Aligned_cols=38 Identities=21% Similarity=0.441 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCcccccccccc
Q 023479 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (281)
Q Consensus 115 l~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQ 157 (281)
...|+.+|..- +.+...+...|+.+. +|+-.+|+-||-
T Consensus 18 ~e~L~~Yy~~h-k~L~EeDl~~L~~ks----kms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAAH-QQLRETDIPQLSQAS----RLSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHHT-CCCCTTHHHHHHHHT----TCCHHHHHHHHH
T ss_pred chHHHHHHHHh-cccchhhHHHHHHHh----CCCHHHHHHHHH
Confidence 35899999995 899999999999999 999999999994
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=60.21 E-value=6.7 Score=26.24 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=32.0
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccc
Q 023479 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 158 (281)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQN 158 (281)
|..|+++....+..++... .+......++|..+ ||+...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g--~s~~~~~~~vA~~~----gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND--NDCKGNQRATARKY----NIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC--TTTTTCHHHHHHHT----TSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC--CCcchHHHHHHHHH----CcCHHHHHHHHHH
Confidence 4568888877665555543 33222356889999 9999999999753
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=59.15 E-value=9.5 Score=29.21 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=37.2
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhH
Q 023479 106 QRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162 (281)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK 162 (281)
+|..+|.++...+-..+..+ ..+.. .+||..+ |++...|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~-g~~~~---~~~A~~~----gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEEN-PDLRK---GEIARRF----NIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHC-TTSCH---HHHHHHH----TCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHC-CCCcH---HHHHHHh----CCCHHHHHHHHhchhhh
Confidence 56789999987777777554 44432 3688999 99999999999776554
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=58.48 E-value=8.1 Score=27.98 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=31.4
Q ss_pred CCCCCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCcccccccccc
Q 023479 104 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (281)
Q Consensus 104 rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQ 157 (281)
++.+..++.++....-..+.. .. -..+||..+ |++...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~--g~----s~~~iA~~~----gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD--GE----SKASVARDI----GVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH--TC----CHHHHHHHH----TCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC--CC----CHHHHHHHH----CcCHHHHHHHHH
Confidence 445667888886555555643 22 245889999 999999999974
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=57.68 E-value=7.7 Score=28.16 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 110 ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
+++.+..+|.-.|... + ...+||..| |++...|+.+...-|.+.|+...
T Consensus 38 L~~~~r~vl~l~~~~g--~----s~~eIA~~l----gis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG--W----STAQIATDL----GIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp SCHHHHHHHHHHHTSC--C----CHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHHHHH
Confidence 5577778887766553 2 245889999 99999999998776666666543
No 84
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=55.10 E-value=7.9 Score=30.43 Aligned_cols=37 Identities=16% Similarity=0.367 Sum_probs=24.8
Q ss_pred HHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhh
Q 023479 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (281)
Q Consensus 115 l~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~ 170 (281)
+.++.-+|+.| +||+.. |-... -.|||.+||.+++.-
T Consensus 15 vRiIkiLyQSN-PyP~pe-------------GTRqa-----RRNRRRRWR~RQrQI 51 (115)
T 2x7l_M 15 VRLIKFLYQSN-PPPNPE-------------GTRQA-----RRNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHHSS-CCCCCC-------------CCTTT-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-CCCCCC-------------Cchhh-----hHhHHHHHHHHHHHH
Confidence 34556668887 999874 21111 169999999887763
No 85
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=54.83 E-value=0.21 Score=41.29 Aligned_cols=30 Identities=0% Similarity=-0.173 Sum_probs=21.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHHhhcCCCCCH
Q 023479 101 KISARQRWTPTPVQLQILESIFDQGTGTPSK 131 (281)
Q Consensus 101 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~~~Ps~ 131 (281)
.+.+|+||.|+..|+..|+..|+.+ +||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~-~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQAN-PVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCC-CCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCC-CCccc
Confidence 3567899999999999999999996 89875
No 86
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=53.42 E-value=11 Score=22.95 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=28.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccc
Q 023479 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 158 (281)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQN 158 (281)
.++.++...+...+... + ...+||..| |++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g--~----s~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN--V----SLHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT--C----CHHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHhh
Confidence 46677665555556443 3 245889999 9999999999853
No 87
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=53.35 E-value=6.1 Score=24.63 Aligned_cols=43 Identities=9% Similarity=0.332 Sum_probs=28.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhh
Q 023479 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (281)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRa 161 (281)
.++.++...+...+.. .. ...+||..| |++...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~--g~----s~~~ia~~l----gvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEK--GH----PRQQLAIIF----GIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHT--TC----CHHHHHHTT----SCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHc--CC----CHHHHHHHH----CCCHHHHHHHHHHccc
Confidence 3455555555555544 22 245788888 9999999999965443
No 88
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=46.96 E-value=10 Score=25.44 Aligned_cols=47 Identities=11% Similarity=-0.083 Sum_probs=34.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHH
Q 023479 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (281)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr 165 (281)
.+++.+..+|...|... ++ ..+||..| |+++..|+.+...-+.+-++
T Consensus 15 ~L~~~~r~il~l~~~~g--~s----~~eIA~~l----gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG--LS----YADAAAVC----GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC--CC----HHHHHHHH----TSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 46788888888876553 22 45889999 99999999888655554443
No 89
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=43.81 E-value=12 Score=27.02 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=24.3
Q ss_pred HHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhhhh
Q 023479 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVS 170 (281)
Q Consensus 115 l~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~~~ 170 (281)
+.++.-+|+.| +||+.+-- .-|. .|||-+|+.++..-
T Consensus 18 vRiIkiLyQSN-P~P~p~GT-rqaR-----------------RNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSN-PPPNPEGT-RQAR-----------------RNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTC-CCCCCCSC-HHHH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-CCCCCCCc-hHHH-----------------HHHHHHHHHHHHHH
Confidence 44566678887 99987411 1121 58999998877653
No 90
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=38.47 E-value=1.1e+02 Score=22.14 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=27.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCC-------Ccccccccccc
Q 023479 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQ-------ISETNVYNWFQ 157 (281)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~g-------Lse~qV~vWFQ 157 (281)
.+++++...+..+...+ +..+.. +|+..|... | ++...|..|..
T Consensus 75 ~l~~~~~~~i~~~~~~~-~~~s~~---~i~~~l~~~-g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 75 IATPEIENRIEEYKRSS-PGMFSW---EIREKLIRE-GVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp SSCSTHHHHHHHTTTTC-TTCCHH---HHHHHHHHT-SSSCSTTCCCHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHhC-cchHHH---HHHHHHHHc-CCccccCCcCHHHHHHHHH
Confidence 56677777777777664 545544 455555444 5 47778888875
No 91
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=36.04 E-value=24 Score=27.11 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=33.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHhh
Q 023479 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQL 168 (281)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~~ 168 (281)
.+++.+..+|. .|... + ...+||..| |++...|+.+...-|.+-|+...
T Consensus 109 ~L~~~~r~v~~-~~~~g--~----s~~EIA~~l----gis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG--Y----SYREIATIL----SKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHTTT--C----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC--C----CHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777 44442 3 345889999 99999999988766666655443
No 92
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=35.94 E-value=26 Score=26.84 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHH
Q 023479 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (281)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~ 166 (281)
.+++.+..+|...|... +. ..+||..| |+++..|+.|...-|.+-++.
T Consensus 22 ~L~~~~r~vl~l~y~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD--YS----LAEIADEF----GVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTC--CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 46788888888877664 22 35889999 999999999998777666554
No 93
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=33.56 E-value=26 Score=24.04 Aligned_cols=50 Identities=8% Similarity=0.081 Sum_probs=34.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHH
Q 023479 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (281)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~K 164 (281)
.+++.+..+|...|..... ......+||..| |+++..|+.|...-+.+-+
T Consensus 10 ~L~~~er~il~l~~~l~~~--~~~s~~eIA~~l----~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG--REHTLEEVGAYF----GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS--SCCCHHHHHHHH----TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC--CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 4788899999888851000 012245889999 9999999988765554444
No 94
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=31.74 E-value=37 Score=25.32 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=33.6
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhH
Q 023479 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRAR 162 (281)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK 162 (281)
...+++.++.+|.-++ .. +. ..+||..| ++++..|+.+..+-+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G--~s----~~EIA~~L----~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EG--FL----VTEIAKKL----NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HT--CC----HHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 4568999999998765 32 22 35899999 99999999887654443
No 95
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=31.02 E-value=21 Score=28.71 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHH
Q 023479 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (281)
Q Consensus 115 l~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~K 164 (281)
+......|... .|- .....+||+.. |++...|+.+|.|+-.=..
T Consensus 34 l~aa~~lf~~~-G~~-~~tv~~IA~~a----gvs~~t~Y~~F~sK~~Ll~ 77 (215)
T 2qko_A 34 VNAAIEVLARE-GAR-GLTFRAVDVEA----NVPKGTASNYFPSRDDLFD 77 (215)
T ss_dssp HHHHHHHHHHT-CTT-TCCHHHHHHHS----SSTTTCHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHh-Chh-hccHHHHHHHc----CCCcchHHHhCCCHHHHHH
Confidence 44555568875 654 44566889998 9999999999999755443
No 96
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=30.54 E-value=20 Score=24.22 Aligned_cols=50 Identities=8% Similarity=0.137 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHH
Q 023479 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (281)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~K 164 (281)
.+++.+..+|...|..+ .+ ......+||..| |+++..|+.+...-+.|-+
T Consensus 5 ~L~~~er~il~l~~~l~-~~-~g~s~~eIA~~l----gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGID-MN-TDYTLEEVGKQF----DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTT-SS-SCCCHHHHHHHH----TCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccC-CC-CCCCHHHHHHHH----CcCHHHHHHHHHHHHHHHH
Confidence 46788889998888321 00 112345889999 9999999988754444443
No 97
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=29.92 E-value=47 Score=27.04 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhh
Q 023479 113 VQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (281)
Q Consensus 113 ~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRa 161 (281)
.-+......|... .|-. ....+||+.. |++...|+..|.++-.
T Consensus 34 ~Il~aA~~lf~~~-G~~~-~t~~~IA~~A----gvs~~t~Y~~F~sKe~ 76 (230)
T 2iai_A 34 TLLSVAVQVFIER-GYDG-TSMEHLSKAA----GISKSSIYHHVTGKEE 76 (230)
T ss_dssp CHHHHHHHHHHHH-CTTT-CCHHHHHHHH----TSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHHHc-Cccc-cCHHHHHHHH----CCChhHHHHhCCCHHH
Confidence 3456667778885 6653 3466889999 9999999999999843
No 98
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.55 E-value=31 Score=26.25 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHHh
Q 023479 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 167 (281)
Q Consensus 110 ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~~ 167 (281)
+++.+..+|.-.|... +. ..+||..| |+++..|+.+...-|.+-++..
T Consensus 26 L~~~~r~vl~l~~~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED--YS----LSEIADTF----NVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSC--CC----HHHHHHHT----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHHH
Confidence 5677888888776653 32 35889999 9999999999877666666543
No 99
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=28.57 E-value=35 Score=26.95 Aligned_cols=42 Identities=12% Similarity=0.438 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhh
Q 023479 114 QLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (281)
Q Consensus 114 Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRa 161 (281)
-+......|... .|- .....+||+.. |++...|+.+|.++-.
T Consensus 36 Il~aa~~l~~~~-G~~-~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 36 IIKVATELFREK-GYY-ATSLDDIADRI----GFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHHT-CTT-TCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHc-Ccc-cCcHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 344555567775 654 34566889999 9999999999999854
No 100
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=28.45 E-value=30 Score=24.69 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=33.5
Q ss_pred CCCChHHHHHHHHHHhh----cCCCCCHhHHHHHHHHHHhcCCCccccccccc
Q 023479 108 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWF 156 (281)
Q Consensus 108 t~ft~~Ql~~LE~~F~~----~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWF 156 (281)
|.++.+++..++.+|.. +..+.+..+...+...+ |++...+..+|
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~ 49 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS----KLPILELSHIW 49 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH----SSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc----CCCHHHHHHHH
Confidence 56789999999999975 12567777777777777 88877666555
No 101
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=26.75 E-value=64 Score=25.64 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=24.5
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 023479 40 VKVMTDEQLETLRKQIAVYATICEQLVE 67 (281)
Q Consensus 40 ~~~~t~~~~~~lr~qi~~~~~~c~~~~~ 67 (281)
...++.++++|+++|..+...||...-.
T Consensus 50 k~~l~~Ed~~RY~kQ~~lv~~I~~~fE~ 77 (126)
T 2wl8_A 50 RESLPPEQFEKYQEQHSVMCKICEQFEA 77 (126)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4568999999999999999999997654
No 102
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=26.42 E-value=29 Score=24.76 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=33.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHH
Q 023479 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (281)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~K 164 (281)
.+++.+..+|...|..... ......+||..| |++...|+.+...-+.|-|
T Consensus 18 ~L~~~er~vl~l~~~l~~~--~~~s~~EIA~~l----gis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG--KPKTLEEVGQYF----NVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS--SCCCHHHHHHHH----TCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCC--CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 4678888888887751000 012345889999 9999999988754444443
No 103
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=26.06 E-value=48 Score=24.11 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=33.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHH
Q 023479 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKR 165 (281)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr 165 (281)
..+++.++.+|.-++.- +. ..+||..| |+++..|+.+..+-+.|.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g---~s----~~eIA~~l----~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG---LT----NKQIADRM----FLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHTT---CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHcC---CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHcC
Confidence 35889999999886322 22 35899999 99999999887655544443
No 104
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=25.94 E-value=1.1e+02 Score=23.78 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=31.2
Q ss_pred CCCCCChHHHHHHHHHHhh----cCCCCCHhHHHHHHHHHHhcCCCccc
Q 023479 106 QRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISET 150 (281)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~----~~~~Ps~~~r~~LA~~L~~~~gLse~ 150 (281)
+|..+|.+|+..|..+|.. +..+.+..+...+...| |+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~l----g~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSL----GRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHT----TSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHc----CCCcc
Confidence 4567999999999999975 23688888887777777 76543
No 105
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=25.35 E-value=27 Score=27.57 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhh
Q 023479 113 VQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (281)
Q Consensus 113 ~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRa 161 (281)
.-+..-...|... .| . .....||+.. |++...|+..|.|+-.
T Consensus 19 ~Il~aA~~lf~~~-G~-~-~s~~~IA~~a----gvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 19 KILAAAVRVFSEE-GL-D-AHLERIAREA----GVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHHH-CT-T-CCHHHHHHHT----TCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHhc-Cc-C-CCHHHHHHHh----CCChHHHHHHcCCHHH
Confidence 3455556668886 77 5 6788999999 9999999999999743
No 106
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=25.33 E-value=36 Score=24.41 Aligned_cols=45 Identities=22% Similarity=0.185 Sum_probs=32.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHH
Q 023479 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 163 (281)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~ 163 (281)
..+++.++.+|.-++ . .+.. .+||..| |+++..|+.+..+-+.|.
T Consensus 28 ~~Lt~~e~~vl~l~~-~--g~s~----~eIA~~l----~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 28 EMLTEREMEILLLIA-K--GYSN----QEIASAS----HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GGCCSHHHHHHHHHH-T--TCCT----THHHHHH----TCCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHH-c--CCCH----HHHHHHH----CcCHHHHHHHHHHHHHHH
Confidence 457888999998753 2 2332 3889999 999999998876544443
No 107
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=25.27 E-value=13 Score=32.64 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhh
Q 023479 115 LQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRA 161 (281)
Q Consensus 115 l~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRa 161 (281)
+......|... .|- .....+||+.. |++...|+.+|.|+-.
T Consensus 126 l~aa~~l~~~~-G~~-~~T~~~IA~~A----Gvs~gtlY~yF~sKe~ 166 (311)
T 4ich_A 126 LETAWRLIARR-GYH-NVRIHDIASEL----GTSNATIHYHFPSKKD 166 (311)
T ss_dssp HHHHHHHHHHH-CGG-GCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHc-CCc-cCCHHHHHHHh----CCCchhHHHhCCCHHH
Confidence 33444557765 553 34566889998 9999999999999854
No 108
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=25.01 E-value=89 Score=22.77 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=36.0
Q ss_pred CCCCCChHHHHHHHHHHhh----cCCCCCHhHHHHHHHHHHhcCC--Cccccccccc
Q 023479 106 QRWTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQ--ISETNVYNWF 156 (281)
Q Consensus 106 ~Rt~ft~~Ql~~LE~~F~~----~~~~Ps~~~r~~LA~~L~~~~g--Lse~qV~vWF 156 (281)
....++.+++..|..+|.. ++.+.+..+...+...+ | +++..|..+|
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~l----g~~~~~~ei~~l~ 78 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSL----GYMPNEVELEVII 78 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHH----TCCCCTTTHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh----CCCCCHHHHHHHH
Confidence 3467899999999999976 23689998888888887 6 4566676666
No 109
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=24.82 E-value=39 Score=26.88 Aligned_cols=47 Identities=13% Similarity=-0.016 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHH
Q 023479 110 PTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (281)
Q Consensus 110 ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~ 166 (281)
+++.+..+|.-.|... + ...+||..| |+++..|+.+...-|.+-|+.
T Consensus 141 L~~~~r~vl~l~~~~g--~----s~~EIA~~l----gis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG--L----SYEEIAAIM----DCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC--C----CHHHHHHHT----TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC--C----CHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Confidence 3455555555544432 2 245888999 999999999987666666554
No 110
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=24.03 E-value=43 Score=27.43 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=35.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHHHH
Q 023479 109 TPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 166 (281)
Q Consensus 109 ~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~Kr~ 166 (281)
.+++.+..+|...|... + ...+||..| |++...|+.+...-|.+-|+.
T Consensus 187 ~L~~~~r~vl~l~~~~g--~----s~~EIA~~l----gis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE--L----PAKEVAKIL----ETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTSC--C----CHHHHHHHT----TSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC--C----CHHHHHHHh----CCCHHHHHHHHHHHHHHHHHH
Confidence 36677777887776553 2 245889999 999999999987666666554
No 111
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=23.56 E-value=46 Score=22.24 Aligned_cols=46 Identities=30% Similarity=0.274 Sum_probs=33.3
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHH
Q 023479 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 163 (281)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~ 163 (281)
-..+++.++.+|..+ .. .+ ...+||..| |++...|+.+...-+.|.
T Consensus 9 ~~~L~~~e~~il~~~-~~--g~----s~~eIA~~l----~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQ--DK----TTKEIASEL----FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCCHHHHHHHHHH-TT--TC----CHHHHHHHH----TSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-Hc--CC----CHHHHHHHH----CCCHHHHHHHHHHHHHHH
Confidence 346889999999884 33 23 235889999 999999998886544443
No 112
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.12 E-value=43 Score=26.73 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHH
Q 023479 112 PVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 163 (281)
Q Consensus 112 ~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~ 163 (281)
..-+..-...|... .|-. .....||+.. |++...|+..|.|+-.=.
T Consensus 14 ~~Il~aA~~lF~~~-Gy~~-ts~~~IA~~a----Gvsk~tlY~~F~sKe~L~ 59 (202)
T 2i10_A 14 QVALQTAMELFWRQ-GYEG-TSITDLTKAL----GINPPSLYAAFGSKRDLF 59 (202)
T ss_dssp HHHHHHHHHHHHHH-TTTT-CCHHHHHHHH----TCCHHHHHHHHCSHHHHH
T ss_pred HHHHHHHHHHHHHh-Cccc-CCHHHHHHHh----CCChHHHHHHhCCHHHHH
Confidence 34455556668886 6653 4566889999 999999999999875443
No 113
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.90 E-value=34 Score=24.61 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=32.2
Q ss_pred CCCChHHHHHHHHHHhh----cCCCCCHhHHHHHHHHHHhcCCCccccccccc
Q 023479 108 WTPTPVQLQILESIFDQ----GTGTPSKQKIKEITVELSQHGQISETNVYNWF 156 (281)
Q Consensus 108 t~ft~~Ql~~LE~~F~~----~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWF 156 (281)
|.++.++...|+.+|.. +..+.+..+...+...+ +++...|..+|
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~ 50 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKT----GLPSTLLAHIW 50 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTT----TCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHc----CCCHHHHHHHH
Confidence 45788899999999865 22577777776666666 78777666555
No 114
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=22.62 E-value=36 Score=24.05 Aligned_cols=47 Identities=30% Similarity=0.254 Sum_probs=33.8
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHHH
Q 023479 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSK 164 (281)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~K 164 (281)
-..+++.+..+|.-++ . .+ ...+||..| |+++..|+.+..+-+.|.+
T Consensus 19 ~~~Lt~~e~~vl~l~~-~--g~----s~~eIA~~l----~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 19 VNQLTPRERDILKLIA-Q--GL----PNKMIARRL----DITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGGSCHHHHHHHHHHT-T--TC----CHHHHHHHH----TSCHHHHHHHHHHHHHHTT
T ss_pred HccCCHHHHHHHHHHH-c--CC----CHHHHHHHH----CcCHHHHHHHHHHHHHHHc
Confidence 3468899999998843 2 22 345889999 9999999988765444433
No 115
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=22.16 E-value=32 Score=18.56 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=11.6
Q ss_pred ccccccccccchhhH
Q 023479 148 SETNVYNWFQNRRAR 162 (281)
Q Consensus 148 se~qV~vWFQNRRaK 162 (281)
+...|.+-|+|||..
T Consensus 2 skkpvpiiycnrrtg 16 (21)
T 8tfv_A 2 SKKPVPIIYCNRRTG 16 (26)
T ss_dssp CCCCCCCEEEEGGGT
T ss_pred CCCcccEEEEcCccc
Confidence 356788899999864
No 116
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=21.95 E-value=76 Score=23.18 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=29.3
Q ss_pred CCCCChHHHHHHHHHHhhcC-CCCC-HhHHHHHHHHHHhcCCCccccccccc
Q 023479 107 RWTPTPVQLQILESIFDQGT-GTPS-KQKIKEITVELSQHGQISETNVYNWF 156 (281)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~-~~Ps-~~~r~~LA~~L~~~~gLse~qV~vWF 156 (281)
+..|+.++....-..+.... .+++ .....++|..+ |++...|..|.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~----gIs~~tl~~W~ 51 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKI----GCTPETLRVWV 51 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----TSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHH----CcCHHHHHHHH
Confidence 34688877654444443210 1222 13566889999 99999999996
No 117
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=21.91 E-value=1.3e+02 Score=23.46 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=34.9
Q ss_pred CCCCCCCChHHHHHHHHHH-hhcCCCCCHhHHHHHHHHHHhcC--CCccccccccccc
Q 023479 104 ARQRWTPTPVQLQILESIF-DQGTGTPSKQKIKEITVELSQHG--QISETNVYNWFQN 158 (281)
Q Consensus 104 rr~Rt~ft~~Ql~~LE~~F-~~~~~~Ps~~~r~~LA~~L~~~~--gLse~qV~vWFQN 158 (281)
+++|.++|.+|...|-..+ +.+ +-.+.. +||.-..... +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~-~~~~q~---~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQ-NRSGQQ---DLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSS-SCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhC-CCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5678999999999999999 554 444443 4555111122 6788889999855
No 118
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=20.91 E-value=53 Score=23.61 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=28.5
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCcccccccccc
Q 023479 107 RWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQ 157 (281)
Q Consensus 107 Rt~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQ 157 (281)
|..|+.++....-..+..... ....+||..+ ||+...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~----gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDL----GINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHH----CcCHHHHHHHHH
Confidence 346888776555444432101 2355889999 999999999973
No 119
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=20.50 E-value=1.5e+02 Score=25.58 Aligned_cols=45 Identities=22% Similarity=0.154 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccchhhHH
Q 023479 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARS 163 (281)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQNRRaK~ 163 (281)
..+|+.++.+|.-.. . .+. ..+||..| +++++.|+....|-+.|.
T Consensus 196 ~~Lt~re~~vl~~~~-~--G~s----~~eIA~~l----~is~~TV~~~~~~~~~kl 240 (265)
T 3qp6_A 196 MPLSQREYDIFHWMS-R--GKT----NWEIATIL----NISERTVKFHVANVIRKL 240 (265)
T ss_dssp CCCCHHHHHHHHHHH-T--TCC----HHHHHHHH----TSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH-c--CCC----HHHHHHHH----CcCHHHHHHHHHHHHHHh
Confidence 578999999998774 2 222 45899999 999999998887655554
No 120
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=20.40 E-value=75 Score=23.83 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=31.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhcCCCccccccccccc
Q 023479 108 WTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQN 158 (281)
Q Consensus 108 t~ft~~Ql~~LE~~F~~~~~~Ps~~~r~~LA~~L~~~~gLse~qV~vWFQN 158 (281)
..++.++...+...+... + ...+||..| |++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G--~----s~~~ia~~l----gis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN--V----SLHEMSRKI----SRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT--C----CHHHHHHHH----TCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHc
Confidence 457788777777777543 3 245889999 9999999999963
Done!