Query 023481
Match_columns 281
No_of_seqs 215 out of 1326
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00187 photosystem II light- 100.0 1.3E-35 2.9E-40 276.4 11.4 200 38-249 51-277 (286)
2 PLN00048 photosystem I light h 100.0 1E-34 2.2E-39 268.1 10.0 193 37-249 40-252 (262)
3 PLN00101 Photosystem I light-h 100.0 3.5E-34 7.6E-39 262.8 10.8 183 38-249 52-242 (250)
4 PLN00098 light-harvesting comp 100.0 4.1E-34 8.9E-39 264.5 10.2 189 37-249 60-257 (267)
5 PLN00097 photosystem I light h 100.0 1.3E-33 2.8E-38 258.2 9.8 185 37-249 42-239 (244)
6 PLN00099 light-harvesting comp 100.0 1.7E-33 3.7E-38 257.6 8.8 176 38-249 43-229 (243)
7 PLN00147 light-harvesting comp 100.0 6.7E-33 1.5E-37 254.7 11.0 188 35-249 41-242 (252)
8 PLN00100 light-harvesting comp 100.0 1.2E-32 2.6E-37 251.9 9.5 175 31-248 27-201 (246)
9 PLN00025 photosystem II light 100.0 1.2E-32 2.7E-37 254.1 8.8 180 38-249 50-248 (262)
10 PLN00171 photosystem light-ha 100.0 8.8E-31 1.9E-35 247.1 9.7 188 37-249 106-315 (324)
11 PF00504 Chloroa_b-bind: Chlor 100.0 2.3E-29 5.1E-34 214.1 7.2 150 49-230 2-156 (156)
12 PLN00170 photosystem II light- 99.9 1.6E-28 3.4E-33 226.0 7.8 177 38-241 50-254 (255)
13 PLN00089 fucoxanthin-chlorophy 99.9 7.4E-26 1.6E-30 203.4 6.1 134 97-237 71-207 (209)
14 PLN00120 fucoxanthin-chlorophy 99.8 1E-21 2.2E-26 176.0 4.0 130 96-236 59-197 (202)
15 PLN00084 photosystem II subuni 99.6 2.8E-15 6E-20 131.3 4.7 64 203-266 131-197 (214)
16 PLN00098 light-harvesting comp 99.4 5.8E-13 1.3E-17 124.0 5.0 69 169-239 64-132 (267)
17 PLN00101 Photosystem I light-h 99.3 1.7E-12 3.6E-17 120.0 4.9 53 185-237 69-121 (250)
18 PLN00147 light-harvesting comp 99.2 7.9E-12 1.7E-16 115.7 3.5 52 185-236 61-112 (252)
19 PLN00097 photosystem I light h 99.2 1.3E-11 2.9E-16 113.7 4.9 68 167-236 44-111 (244)
20 PLN00170 photosystem II light- 99.2 2.2E-11 4.8E-16 112.8 4.1 54 185-238 73-126 (255)
21 PLN00048 photosystem I light h 99.1 6.8E-11 1.5E-15 110.0 6.6 55 185-239 58-117 (262)
22 PF00504 Chloroa_b-bind: Chlor 99.1 1.9E-11 4.2E-16 104.1 2.7 49 186-235 9-57 (156)
23 PLN00187 photosystem II light- 99.1 5.1E-11 1.1E-15 112.0 5.5 50 185-234 68-160 (286)
24 PLN00025 photosystem II light 99.1 3.1E-11 6.7E-16 112.3 3.6 52 185-236 69-120 (262)
25 PLN00099 light-harvesting comp 99.1 9.8E-11 2.1E-15 108.0 5.1 49 185-233 60-108 (243)
26 PLN00100 light-harvesting comp 99.1 6.1E-11 1.3E-15 109.3 3.5 48 185-232 51-98 (246)
27 PLN00171 photosystem light-ha 99.1 5E-11 1.1E-15 113.5 2.0 53 185-237 126-178 (324)
28 PHA02337 putative high light i 99.0 1.5E-10 3.1E-15 77.2 3.2 32 100-131 1-32 (35)
29 PHA02337 putative high light i 99.0 2.9E-10 6.3E-15 75.7 3.0 31 206-236 1-31 (35)
30 PLN00089 fucoxanthin-chlorophy 99.0 6.1E-10 1.3E-14 100.7 6.1 49 187-235 54-103 (209)
31 PLN00084 photosystem II subuni 99.0 6E-10 1.3E-14 98.0 5.1 53 101-153 135-188 (214)
32 PLN00014 light-harvesting-like 98.6 4.1E-08 8.9E-13 89.9 4.7 39 208-246 160-198 (250)
33 PLN00120 fucoxanthin-chlorophy 98.5 2.3E-08 4.9E-13 90.1 1.3 45 185-230 41-87 (202)
34 PLN00014 light-harvesting-like 98.4 2.2E-07 4.8E-12 85.1 4.9 35 102-136 160-194 (250)
35 PLN02449 ferrochelatase 85.8 0.49 1.1E-05 48.2 2.2 30 95-132 455-484 (485)
36 PLN02449 ferrochelatase 82.8 0.73 1.6E-05 47.0 1.9 22 217-238 463-484 (485)
37 KOG0593 Predicted protein kina 24.0 40 0.00088 33.4 1.3 32 99-131 165-202 (396)
No 1
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=1.3e-35 Score=276.37 Aligned_cols=200 Identities=19% Similarity=0.149 Sum_probs=142.6
Q ss_pred CCCccCCCCCchhhhhhcCCCCCccceEEeccccccC--------------CCCCCC--cCCCCc-ccCCCCCCCCc--c
Q 023481 38 SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKA--------------PPKTKK--VESKPK-VEDGIFGTSGG--F 98 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a--------------~~~~~~--~~~~pk-~~dg~~~~~~~--f 98 (281)
.+++|.|+.++|.||||++|+|++|||+.|.+..+.. .++.++ .+..+. ......+++.. +
T Consensus 51 ~r~~w~p~~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l 130 (286)
T PLN00187 51 DRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGL 130 (286)
T ss_pred CccccCCCCCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHH
Confidence 4789999999999999999999999999998776531 122221 011111 11122344444 4
Q ss_pred CccchhhhhHHHHHHHHHHHHHhhhhhcCcchhhhccc---ccCcccccchh-----HHHHHHHHHHHHHHhhhccCCcc
Q 023481 99 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL---ETGIPIYEAEP-----LLLFFILFTLLGAIGALGDRGKF 170 (281)
Q Consensus 99 Gf~r~aEl~nGR~AMLG~~g~lv~E~~tg~gil~ql~~---~~G~p~~~~~p-----l~l~~v~f~llgai~~l~~~~~f 170 (281)
.|+|++|++||||||||++|++++|+++|..+. ..+. ..|. .|...+ ..++++.+++++++|.+..
T Consensus 131 ~r~REaELiHGRwAMLAvaG~lvpEll~G~~W~-~aG~~~~~~g~-~y~g~~~p~~~~~l~~iqvllmG~~E~~R~---- 204 (286)
T PLN00187 131 QRFRECELIHGRWAMLATLGALSVEALTGVTWQ-DAGKVELVDGS-SYLGQPLPFSITTLIWIEVLVIGYIEFQRN---- 204 (286)
T ss_pred HHHHHHHhhhhHHHHHHhhchhhHHhccCCccc-ccccccccccc-cccccccchhHHHHHHHHHHHHHHHHhhhc----
Confidence 688999999999999999999999998765321 1111 0111 111111 2344566667888864321
Q ss_pred cCCCCCCCCCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481 171 VDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 171 ~~~~~~p~G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~ 249 (281)
.... .....|||+.+|||+|+.++++++..+|.+||+||||||+|++|+++|+.+||+|+++||..|+.+|..
T Consensus 205 ~~~~------~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~~ 277 (286)
T PLN00187 205 AELD------PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 277 (286)
T ss_pred cCCC------CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCccc
Confidence 1100 012368999878999998877788899999999999999999999999999999999999999999964
No 2
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=1e-34 Score=268.08 Aligned_cols=193 Identities=22% Similarity=0.272 Sum_probs=142.4
Q ss_pred CCCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHH
Q 023481 37 FSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGF 116 (281)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~ 116 (281)
..+.+|.|..+.|.|||+++|+|.+||++.|.++. ..+.. . ...|.|++|++||||||||+
T Consensus 40 ~~r~~w~p~~~~P~yLdG~lPGD~GFDPlGL~~p~---~~~~~--------~--------~~~~~r~aEL~hGR~AMLa~ 100 (262)
T PLN00048 40 ADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPE---GAGGF--------I--------EPQWLAYGEVINGRFAMLGA 100 (262)
T ss_pred CCCceecCCCCCccccCCCCCCccCCCccccCCcc---ccccc--------h--------hHHHHHHHHhhcchHHHHHH
Confidence 36899999999999999999999999999994221 11100 0 12468899999999999999
Q ss_pred HHHHhhhhhcCcchhhhcc----cccCc------ccccchhHHHHHHHHHHHHHHhhhccCCccc-CCC--CC-CCC---
Q 023481 117 AASLLGEGITGKGILAQLN----LETGI------PIYEAEPLLLFFILFTLLGAIGALGDRGKFV-DEP--DE-PTG--- 179 (281)
Q Consensus 117 ~g~lv~E~~tg~gil~ql~----~~~G~------p~~~~~pl~l~~v~f~llgai~~l~~~~~f~-~~~--~~-p~G--- 179 (281)
+|++++|++++.|++.+.. ...|. ..|...+..++++.+.+++++|.... ..+. ... .. ..+
T Consensus 101 ~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~-~~~~~pG~~~~~~~~~~~~ 179 (262)
T PLN00048 101 AGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRA-QDYYKPGSMGKQYFLGLEK 179 (262)
T ss_pred hhHHHHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeecc-ccccCCCcccccccccchh
Confidence 9999999999887754321 11221 11333455666778888888864211 1111 000 00 000
Q ss_pred -C--CCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481 180 -L--GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 180 -~--~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~ 249 (281)
. ..+..||||.+|||+|++++++++..+|.+||+||||||+|++|+++|+++||+|+++||..|+.+|..
T Consensus 180 ~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~ 252 (262)
T PLN00048 180 GLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVN 252 (262)
T ss_pred ccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCccc
Confidence 0 113469999889999999887788999999999999999999999999999999999999999999964
No 3
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=262.82 Aligned_cols=183 Identities=25% Similarity=0.237 Sum_probs=136.9
Q ss_pred CCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHH
Q 023481 38 SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~ 117 (281)
.+.+|.|..+.|.|||+++|+|.+||++.|.+. ...+.++|++|++||||||+|++
T Consensus 52 ~r~~W~P~~~~P~~LdG~~PGD~GFDPlGl~~d------------------------~~~~~~~r~aEl~hGRlAMla~~ 107 (250)
T PLN00101 52 KKGEWLPGLASPGYLNGSLPGDNGFDPLGLAED------------------------PENLKWFVQAELVNGRWAMLGVA 107 (250)
T ss_pred cccccCCCCCCCcccCCCCCCccCCCccccCCC------------------------HHHHHHHHHHHHhcccHHHHHHH
Confidence 577999999999999999999999999998421 12356789999999999999999
Q ss_pred HHHhhhhhcCcchhhhcc-cccCcccccchhHHHHHHHHHHHHHHhhhccCCcc--cCCCCCC--CC---CCCCcCCCCC
Q 023481 118 ASLLGEGITGKGILAQLN-LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF--VDEPDEP--TG---LGGAVIPPGK 189 (281)
Q Consensus 118 g~lv~E~~tg~gil~ql~-~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f--~~~~~~p--~G---~~~~~~~PGd 189 (281)
|++++|++++.|++..-. .+.|...+...+..++++.+.+++++|.+...... .....++ .+ .+++..|||+
T Consensus 108 G~l~~e~l~~~g~~~~p~w~~ag~~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG 187 (250)
T PLN00101 108 GMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG 187 (250)
T ss_pred HHHHHHHhcCCCCcCCCccccccchhhcccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCCCC
Confidence 999999999988753211 12343333333445556667788888753211100 0000111 01 1234569998
Q ss_pred CcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481 190 GLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 190 ~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~ 249 (281)
. ||||||++++ ++|.+||+||||||+|++|+++|+.+||+||++||..|+.+|..
T Consensus 188 ~-FDPLgl~~~~----~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~ 242 (250)
T PLN00101 188 I-FNPLNFAPTE----EAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWH 242 (250)
T ss_pred c-cCccCCCccH----HHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcc
Confidence 5 8999998643 68999999999999999999999999999999999999999964
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=4.1e-34 Score=264.49 Aligned_cols=189 Identities=20% Similarity=0.194 Sum_probs=139.6
Q ss_pred CCCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHH
Q 023481 37 FSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGF 116 (281)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~ 116 (281)
-.+.+|.|..+.|.|||+++|+|.+||++.|.+. ...+.|+|++||+||||||||+
T Consensus 60 ~~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~------------------------~~~~~~~r~aEl~HGR~AMLA~ 115 (267)
T PLN00098 60 PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSD------------------------PELLKWFAQAELMHSRWAMLAV 115 (267)
T ss_pred CCccccCCCCCCCccCCCCCCCCCCcCccccCCC------------------------HHHHHHHHHHHhhccHHHHHHH
Confidence 3567899999999999999999999999988521 1235689999999999999999
Q ss_pred HHHHhhhhhcCcchhhhcc-cccCcccccchhHHHHHHHHHHHHHHhhhccCCcccCC--CCCC--CC---CCCCcCCCC
Q 023481 117 AASLLGEGITGKGILAQLN-LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE--PDEP--TG---LGGAVIPPG 188 (281)
Q Consensus 117 ~g~lv~E~~tg~gil~ql~-~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f~~~--~~~p--~G---~~~~~~~PG 188 (281)
+|++++|++++.|++.... ...|...+...+..++++.+.+++++|..........+ ..++ .+ ...+..|||
T Consensus 116 ~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPG 195 (267)
T PLN00098 116 AGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPG 195 (267)
T ss_pred HHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCC
Confidence 9999999999877654221 12332222223334455666678888752111100000 0000 00 112347999
Q ss_pred CCcCCCCCCCC-CCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481 189 KGLRSALGLKE-GGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 189 d~ffDPLGL~~-~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~ 249 (281)
|.+|||+|+.+ +++++..+|.+||+||||||+|++|+++|+.+||+||++||..|+.+|..
T Consensus 196 g~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~ 257 (267)
T PLN00098 196 GLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGH 257 (267)
T ss_pred CccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCccc
Confidence 98899999974 56678889999999999999999999999999999999999999999954
No 5
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=1.3e-33 Score=258.22 Aligned_cols=185 Identities=20% Similarity=0.152 Sum_probs=138.6
Q ss_pred CCCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHH
Q 023481 37 FSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGF 116 (281)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~ 116 (281)
-.+.+|.|....|.|||+++|+|.+||++.|.+. ...+.|+|++|++||||||||+
T Consensus 42 ~~R~~w~Pg~~~P~~LdG~~pGD~GfDPlGl~~~------------------------~~~~~~~r~aEl~hGR~AMLa~ 97 (244)
T PLN00097 42 ADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGAD------------------------PEMLKWFVQAELMHARWAMLGL 97 (244)
T ss_pred CCCcccCCCCCCccccCCCCCCCCCCCccccCcC------------------------HHHHHHHHHHHHhcchHHHHHH
Confidence 3578999999999999999999999999998411 1246789999999999999999
Q ss_pred HHHHhhhhhcCcchh---hhcccccCccc-ccchhHHHHHHHHHHHHHHhhhccCCcccC---CCCCC------CCCCCC
Q 023481 117 AASLLGEGITGKGIL---AQLNLETGIPI-YEAEPLLLFFILFTLLGAIGALGDRGKFVD---EPDEP------TGLGGA 183 (281)
Q Consensus 117 ~g~lv~E~~tg~gil---~ql~~~~G~p~-~~~~pl~l~~v~f~llgai~~l~~~~~f~~---~~~~p------~G~~~~ 183 (281)
+|++++|++++.++. .++. .|... +......++.+.+.+++++|..... .+.. ...++ .....+
T Consensus 98 ~G~lv~e~l~~~g~~~~p~W~~--Ag~~~~~~~~~~~l~~i~~~lmg~~E~~r~~-~~~~pg~~~~~p~~~~~~~~~~~d 174 (244)
T PLN00097 98 AGCVAPELLTKIGMADLPNWID--AAKWDGYWAGAGPLFFIQMAMFNWAEIRRWQ-DMKAPGSMNEDPLFGANKGDTNTD 174 (244)
T ss_pred hhhhHHHHhcCCCcccCCcccc--CCcchhccccchhHHHHHHHHHHHHHHHHhh-cccCCCccccccccccccCCcccc
Confidence 999999999987763 1222 22221 1112234555666678887653211 1110 01111 011234
Q ss_pred cCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481 184 VIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 184 ~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~ 249 (281)
..|||+. |||||+.++++++.++|.+||+||||||++++|+++|+.+||+||++||..|+.+|..
T Consensus 175 ~gYPgg~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~ 239 (244)
T PLN00097 175 VGYPKGL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGH 239 (244)
T ss_pred cCCCCCC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccc
Confidence 5699975 7999999887788899999999999999999999999999999999999999999953
No 6
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=1.7e-33 Score=257.56 Aligned_cols=176 Identities=19% Similarity=0.211 Sum_probs=129.4
Q ss_pred CCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHH
Q 023481 38 SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~ 117 (281)
-+..|.|..++|.|||++.++|.+||++.|.+.. ..+.|+|++|++||||||||++
T Consensus 43 ~~~~w~P~~~~P~~Ldg~~pgd~GfDPlgls~~~------------------------~~~~~~r~~ELkHGR~AMLAv~ 98 (243)
T PLN00099 43 MSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVP------------------------ENLERYKESELIHCRWAMLAVP 98 (243)
T ss_pred ccccccCCCCCCccCCCCCCcccCCCccccccCH------------------------HHHHHHHHHhccCCcHHHHHHh
Confidence 3468999999999999999999999999995310 1367899999999999999999
Q ss_pred HHHhhhhhcCcchhhhc---cccc------Ccccc-cchhHHHHHHHHHHHHHHhhhccCCcccCCCCCCCCCCCCcCCC
Q 023481 118 ASLLGEGITGKGILAQL---NLET------GIPIY-EAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPP 187 (281)
Q Consensus 118 g~lv~E~~tg~gil~ql---~~~~------G~p~~-~~~pl~l~~v~f~llgai~~l~~~~~f~~~~~~p~G~~~~~~~P 187 (281)
|++++|+++...+.+-. .... |.+.. ...+. ++++.+.+++++|... .... ++ ....||
T Consensus 99 G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~-~~~iqvl~ig~~E~~r----~~~~--~~----~~~~yP 167 (243)
T PLN00099 99 GILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPT-ILAIEFLAIAFVEHQR----SMEK--DP----EKKKYP 167 (243)
T ss_pred hHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHH-HHHHHHHHHHHHHHHh----hccC--CC----CCCcCC
Confidence 99999987642221100 0011 11111 11122 2334466778776421 1111 01 123699
Q ss_pred CCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhH-HhcCcChHHHhHhhhCCCcc
Q 023481 188 GKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGE-IITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 188 Gd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E-~iTG~g~l~~l~~~~~~P~~ 249 (281)
|| .|||+|++++++++..+|.+||+||||||||++|+++|+ .+||++|++||..|+.+|..
T Consensus 168 Gd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~ 229 (243)
T PLN00099 168 GG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 229 (243)
T ss_pred CC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCcc
Confidence 99 579999988777888999999999999999999999999 57999999999999999964
No 7
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=6.7e-33 Score=254.73 Aligned_cols=188 Identities=23% Similarity=0.223 Sum_probs=137.7
Q ss_pred CCCCCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHH
Q 023481 35 KPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMI 114 (281)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AML 114 (281)
....+..|.|..++|.|||++.|+|.+||++.|.+. ...+.|+|++||+||||||+
T Consensus 41 ~~~~R~~wlP~~~~P~~Ldg~~pGD~GFDPlgl~~d------------------------~~~~~~~r~aElkhGR~AMl 96 (252)
T PLN00147 41 VAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGED------------------------PESLKWYVQAELVHSRFAMA 96 (252)
T ss_pred CCCCccccCCCCCCCCcCCCCCCCccCCCcccccCC------------------------HHHHHHHHHHHhhccHHHHH
Confidence 346678999999999999999999999999998421 12356899999999999999
Q ss_pred HHHHHHhhhhhcCcchhh---hcccccCccccc-chhHHHHHHHHHHHHHHhhhccCCcccC---CCCC--CCCC-----
Q 023481 115 GFAASLLGEGITGKGILA---QLNLETGIPIYE-AEPLLLFFILFTLLGAIGALGDRGKFVD---EPDE--PTGL----- 180 (281)
Q Consensus 115 G~~g~lv~E~~tg~gil~---ql~~~~G~p~~~-~~pl~l~~v~f~llgai~~l~~~~~f~~---~~~~--p~G~----- 180 (281)
|++|++++|+++..++.. ++. .|...++ .....++++++++++++|..... .+.. ...+ ..+.
T Consensus 97 A~~G~l~~e~~~~~g~~~~p~w~~--ag~~~~~~~~~~~~~~~q~~~mG~~E~~R~~-~~~~pg~~~~~g~~~g~~~~~~ 173 (252)
T PLN00147 97 GVAGILFTDLLRVTGIRNLPVWYE--AGAVKFEFASTRTLFVVQLLLMGFAETKRYM-DFVSPGSQAKEGSFFGLEAALE 173 (252)
T ss_pred HHhhhhHHHHhccCCCcCCcchhh--cccchhccccchHHHHHHHHHHHHHHHHhhc-cccCCCcccccccccccccccc
Confidence 999999999988766421 211 2221111 11122334456678888753110 1110 0000 0000
Q ss_pred CCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481 181 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 181 ~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~ 249 (281)
..+..||||.+|||+||.+++++++.+|.+||+||||||+|++|+++||.+||+|++++|..|+.+|..
T Consensus 174 ~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~ 242 (252)
T PLN00147 174 GLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWH 242 (252)
T ss_pred ccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCccc
Confidence 012358999889999999887788899999999999999999999999999999999999999999963
No 8
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.98 E-value=1.2e-32 Score=251.87 Aligned_cols=175 Identities=21% Similarity=0.197 Sum_probs=129.9
Q ss_pred cccCCCCCCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHH
Q 023481 31 MLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGR 110 (281)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR 110 (281)
+.+-.-..+.+|.|..+.|.||||+.++|.+||++.+.+. ...+.|+|++|++|||
T Consensus 27 ~~~~~~~~r~~W~P~~~~P~~Ldg~~pGd~GFDPlgl~~~------------------------~~~~~~~r~aEl~hGR 82 (246)
T PLN00100 27 RVRVAARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGAN------------------------PETLPYLQEAELMNGR 82 (246)
T ss_pred ccccccCCCcccCCCCCCCCCCCCCCCCCcCCCccccCCC------------------------HHHHHHHHHHHhhcch
Confidence 3444556788999999999999999999999999998421 0135678999999999
Q ss_pred HHHHHHHHHHhhhhhcCcchhhhcccccCcccccchhHHHHHHHHHHHHHHhhhccCCcccCCCCCCCCCCCCcCCCCCC
Q 023481 111 VAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKG 190 (281)
Q Consensus 111 ~AMLG~~g~lv~E~~tg~gil~ql~~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f~~~~~~p~G~~~~~~~PGd~ 190 (281)
|||+|++|++++|+++..++.+ .|...+......++++.+.+++++|..... .+. +.+ ...+||++
T Consensus 83 ~AMla~~G~~~~E~~~~P~w~~-----ag~~~~~~~~~~l~~iqill~g~~E~~r~~-~~~-----~~g---~~~~pg~~ 148 (246)
T PLN00100 83 WAMAATAGILFTDAVGLPKFWE-----AGAEKYGLDLQTLVLIQVVVMAVLEAARYR-GFM-----KTG---ESGVLSFF 148 (246)
T ss_pred HHHHHHhhhhHHHHhcccchhh-----cchhhhccchhHHHHHHHHHHHHHhhhccc-ccc-----ccc---ccCCCCCC
Confidence 9999999999999976443322 222222222223334455567877643111 111 111 12357888
Q ss_pred cCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCc
Q 023481 191 LRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPI 248 (281)
Q Consensus 191 ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~ 248 (281)
.|||+|+++ +.+|.+||+||||||+||+|+++|+.+||+|+++||..|+.+|.
T Consensus 149 ~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~ 201 (246)
T PLN00100 149 PFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPG 201 (246)
T ss_pred CCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCc
Confidence 899999963 36899999999999999999999999999999999999999995
No 9
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.97 E-value=1.2e-32 Score=254.06 Aligned_cols=180 Identities=23% Similarity=0.315 Sum_probs=132.6
Q ss_pred CCCccC-CCC-CchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHH
Q 023481 38 SHLMFN-PLS-NESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIG 115 (281)
Q Consensus 38 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG 115 (281)
.+.+|. |.. ++|.|||++.++|.+|||+.|.+. ...+.++|++|++||||||||
T Consensus 50 ~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~d------------------------p~~~~~~re~El~hGR~AMLa 105 (262)
T PLN00025 50 DRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSAD------------------------PETFARNRELEVIHARWAMLG 105 (262)
T ss_pred CCccccCCcccCCcccccCcCCCCCCCCccccccC------------------------HHHHHHHHHHHHhccHHHHHH
Confidence 456777 433 689999999999999999998521 123678999999999999999
Q ss_pred HHHHHhhhhhcCcchh-h---hccc-----------ccCccc-ccchh-HHHHHHHHHHHHHHhhhccCCcccCCCCCCC
Q 023481 116 FAASLLGEGITGKGIL-A---QLNL-----------ETGIPI-YEAEP-LLLFFILFTLLGAIGALGDRGKFVDEPDEPT 178 (281)
Q Consensus 116 ~~g~lv~E~~tg~gil-~---ql~~-----------~~G~p~-~~~~p-l~l~~v~f~llgai~~l~~~~~f~~~~~~p~ 178 (281)
++|++++|++++.++. . |+.. ..+.+. .+... ..++++.+++++++|.+. +... +.
T Consensus 106 ~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r----~~~~---~~ 178 (262)
T PLN00025 106 ALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR----VNGG---PL 178 (262)
T ss_pred HhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhc----ccCC---cc
Confidence 9999999999866552 1 1110 011111 11111 223445666788887532 1110 11
Q ss_pred CCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481 179 GLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 179 G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~ 249 (281)
+...+..|||+. |||||+.++++++..+|.+||+||||||++++|+++|+.+||+||++||..|+.+|..
T Consensus 179 ~~~~d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~ 248 (262)
T PLN00025 179 GEGLDPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVA 248 (262)
T ss_pred cccccCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccc
Confidence 111234799997 8999999877788899999999999999999999999999999999999999999964
No 10
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.97 E-value=8.8e-31 Score=247.06 Aligned_cols=188 Identities=19% Similarity=0.121 Sum_probs=130.4
Q ss_pred CCCCccCCC-C-CchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHH
Q 023481 37 FSHLMFNPL-S-NESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMI 114 (281)
Q Consensus 37 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AML 114 (281)
-.+.+|.|. + +.|.||||++++|.+||++.|.+. ...+.|+|++||+|||||||
T Consensus 106 ~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~d------------------------p~~l~~~reaELkHGR~AML 161 (324)
T PLN00171 106 EERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKD------------------------PVAFDKYFNFEILHARWAML 161 (324)
T ss_pred CCCccccCCCCCCCCcccCCCCCcccCCCccccccC------------------------HHHHHHHHHHHhccchHHHH
Confidence 456778853 3 789999999999999999999531 11357899999999999999
Q ss_pred HHHHHHhhhhhcCcchhhhc-------cc---------ccCcccc--cc-hh-HHHHHHHHHHHHHHhhhccCCcccCCC
Q 023481 115 GFAASLLGEGITGKGILAQL-------NL---------ETGIPIY--EA-EP-LLLFFILFTLLGAIGALGDRGKFVDEP 174 (281)
Q Consensus 115 G~~g~lv~E~~tg~gil~ql-------~~---------~~G~p~~--~~-~p-l~l~~v~f~llgai~~l~~~~~f~~~~ 174 (281)
|++|++++|+++..+..... +. ..+.|.. .. .. ..++++.+++++.+|.... .......
T Consensus 162 A~~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~-~~~~~~~ 240 (324)
T PLN00171 162 AALGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARY-CGIEALE 240 (324)
T ss_pred HHhhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheee-ccccccC
Confidence 99999999998866543211 10 0011210 00 00 1123334444444432111 1111000
Q ss_pred CCCCCCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481 175 DEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 175 ~~p~G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~ 249 (281)
......+++..|||+.+|||+|++++++++..++.+||+||||||+|++|+++|+.+||+||++||..|+.+|..
T Consensus 241 ~~g~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~ 315 (324)
T PLN00171 241 PLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLH 315 (324)
T ss_pred CccccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccc
Confidence 000112344568998778999999877788899999999999999999999999999999999999999999964
No 11
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.96 E-value=2.3e-29 Score=214.11 Aligned_cols=150 Identities=26% Similarity=0.260 Sum_probs=107.7
Q ss_pred hhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHHHHHhhhhhcCc
Q 023481 49 SLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGK 128 (281)
Q Consensus 49 ~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~g~lv~E~~tg~ 128 (281)
|.+|||+.+++.+||++.|.+.. .+.|+|++|++|||+||+|+++++++|+.++.
T Consensus 2 p~~l~G~~~~~~gfDPlgl~~~~-------------------------~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 2 PPYLDGSVPGDYGFDPLGLSSDP-------------------------DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp -TTTTSTSTTSTSSSTTTTTTSH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred cccccCCCCCCCCCChhhcccch-------------------------hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 77899999999999999986432 57899999999999999999999999999875
Q ss_pred ch----hhhcccc-cCcccccchhHHHHHHHHHHHHHHhhhccCCcccCCCCCCCCCCCCcCCCCCCcCCCCCCCCCCCc
Q 023481 129 GI----LAQLNLE-TGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPI 203 (281)
Q Consensus 129 gi----l~ql~~~-~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f~~~~~~p~G~~~~~~~PGd~ffDPLGL~~~~~~ 203 (281)
+. ..+.... .+. .. .+....++++.++++++.+.......... .......+||+..|||+|+.++++.
T Consensus 57 ~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~ig~~e~~~~~~~~~~~~----~~~~~~~~pG~~~~dplgl~~~~~~ 129 (156)
T PF00504_consen 57 PGVPSFLGQPAWAEAGG--IP-VPAAGWAQILLFIGALEPWRQQGVPEPGE----GGGKDGRYPGDLGFDPLGLAKDPEE 129 (156)
T ss_dssp TSSS-SSTSSSSSSTTS--SS-SHSHHHHHHHHHHHHHHHHHHHHTTTCCT----TSSSSSSSSSSSSSSTSSTSSSCHS
T ss_pred Ccccccccccchhhhhh--hh-hhhHHHHHHHHHHhHhhhhhcccccCCcc----cccccccCccccccchhhhhhhhhh
Confidence 43 2222111 110 01 23344456777778777643221111110 0012346899988999999877778
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHhHH
Q 023481 204 FGFTKSNELFVGRLAQLGIAFSLIGEI 230 (281)
Q Consensus 204 f~~tk~aEl~NGRLAMlG~~g~lv~E~ 230 (281)
+.+++.+||+|||||||||+++++||.
T Consensus 130 ~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 130 KEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999983
No 12
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.95 E-value=1.6e-28 Score=225.98 Aligned_cols=177 Identities=19% Similarity=0.158 Sum_probs=124.3
Q ss_pred CCCccCCCCC------chhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHH
Q 023481 38 SHLMFNPLSN------ESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRV 111 (281)
Q Consensus 38 ~~~~~~~~~~------~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~ 111 (281)
.+..|.|... .|.|+|++.|+|.+||++.|.+ | ...+.++|++|++||||
T Consensus 50 ~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~-------------------d-----~e~~~~~r~~El~hGR~ 105 (255)
T PLN00170 50 PKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGK-------------------D-----PAFLKWYREAELIHGRW 105 (255)
T ss_pred CCccccCCCCCCcccCCcccccccCCCCCCcCccccCC-------------------C-----HHHHHHHHHHHhhccHH
Confidence 3447887653 6999999999999999998842 1 12356889999999999
Q ss_pred HHHHHHHHHhhhhhcCcchhhhcccccCcccccchhHHHHHHHHHHHHHHhhhccCC--cccCCCCCC-----------C
Q 023481 112 AMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG--KFVDEPDEP-----------T 178 (281)
Q Consensus 112 AMLG~~g~lv~E~~tg~gil~ql~~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~--~f~~~~~~p-----------~ 178 (281)
||+|++|++++|+++|..+++. +...+ .+.......++.+.+.+++++|.+.... +......++ .
T Consensus 106 AMLa~~G~~v~e~l~g~~w~~a-G~~~~-~~~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~ 183 (255)
T PLN00170 106 AMAAVVGIFVGQAWSGIPWFEA-GADPG-AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFA 183 (255)
T ss_pred HHHHHHhhhhHHHccCCChhhC-Ccccc-ccCccchHHHHHHHHHHhhhhhheeeccccCCccccccccccccccccccc
Confidence 9999999999999998754332 11100 0111111345556777888887532111 000000010 0
Q ss_pred CCCCCcCCCCCCcCCCCCCCC---------CCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhH
Q 023481 179 GLGGAVIPPGKGLRSALGLKE---------GGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN 241 (281)
Q Consensus 179 G~~~~~~~PGd~ffDPLGL~~---------~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~ 241 (281)
....+..|||+.+||||||.+ +++++.++|.+||+||||||++++|+++|. .||++||++|+
T Consensus 184 ~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 184 NATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred ccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 112245699998899999975 445778899999999999999999999999 79999999986
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.92 E-value=7.4e-26 Score=203.45 Aligned_cols=134 Identities=22% Similarity=0.172 Sum_probs=91.1
Q ss_pred ccCccchhhhhHHHHHHHHHHHHHhhhhhcCcchhhhc-ccccCcccccchhHHH-HHHHHHHHHHHhhhccCCcccCCC
Q 023481 97 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL-NLETGIPIYEAEPLLL-FFILFTLLGAIGALGDRGKFVDEP 174 (281)
Q Consensus 97 ~fGf~r~aEl~nGR~AMLG~~g~lv~E~~tg~gil~ql-~~~~G~p~~~~~pl~l-~~v~f~llgai~~l~~~~~f~~~~ 174 (281)
.+.|+|++||+|||+||||++|++++|.++..|....+ +...+...+...+... ..+++.+++++|....... ...
T Consensus 71 ~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~~~~~~g~~~Qi~~~ig~~E~~~~~~~-~~~- 148 (209)
T PLN00089 71 FLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKSGAMIQIFAWIGFVDLAVSAPA-AAA- 148 (209)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHHHhhcccccHHHHHHHHHHHHHHHhhcc-ccc-
Confidence 35688999999999999999999999998866532111 1111111111112211 2456666777763211000 000
Q ss_pred CCCCCCCCCcCCCCCCcCCCCCCC-CCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChH
Q 023481 175 DEPTGLGGAVIPPGKGLRSALGLK-EGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 237 (281)
Q Consensus 175 ~~p~G~~~~~~~PGd~ffDPLGL~-~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l 237 (281)
......+|||..|||+|+. +++++++.+|.+||+|||||||||+|+++||.+||++++
T Consensus 149 -----~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 149 -----AAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred -----cccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 0112358999889999995 566678889999999999999999999999999999875
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.84 E-value=1e-21 Score=175.95 Aligned_cols=130 Identities=20% Similarity=0.190 Sum_probs=83.5
Q ss_pred CccCccchhhhhHHHHHHHHHHHHHhhhh-hcCcchhhhccc-----ccCcccccchhHHHHHHHHHHHHHHhhhccCCc
Q 023481 96 GGFGFTKQNELFVGRVAMIGFAASLLGEG-ITGKGILAQLNL-----ETGIPIYEAEPLLLFFILFTLLGAIGALGDRGK 169 (281)
Q Consensus 96 ~~fGf~r~aEl~nGR~AMLG~~g~lv~E~-~tg~gil~ql~~-----~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~ 169 (281)
..+.++|++|++|||+||+|++|++++|. .+..|.+...+. ..+...+...|...+++++.+++.+|.+....
T Consensus 59 ~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi~~~ig~~E~~~~~~- 137 (202)
T PLN00120 59 EKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQILAFIGFLELAVMKD- 137 (202)
T ss_pred HHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHhhcc-
Confidence 45778999999999999999999999996 343332221111 01111222334444567777788876432111
Q ss_pred ccCCCCCCCCCCCCcCCCCCCcCC--CCCCCC-CCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcCh
Q 023481 170 FVDEPDEPTGLGGAVIPPGKGLRS--ALGLKE-GGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGA 236 (281)
Q Consensus 170 f~~~~~~p~G~~~~~~~PGd~ffD--PLGL~~-~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~ 236 (281)
..+ ...+|||.-++ ++|++. +++++..++++||+|||||||||+|+++||.++|.-+
T Consensus 138 -------~~~---~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~~~ 197 (202)
T PLN00120 138 -------ITG---EGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVELP 197 (202)
T ss_pred -------ccc---CCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 111 12356653211 445443 3446667889999999999999999999999999754
No 15
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=99.55 E-value=2.8e-15 Score=131.34 Aligned_cols=64 Identities=45% Similarity=0.700 Sum_probs=55.0
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHhHHhc-CcChHHHhHhhhCCCcccchhhHHHHH--HHHHHhh
Q 023481 203 IFGFTKSNELFVGRLAQLGIAFSLIGEIIT-GKGALAQLNIETGIPINEIEPLVLFNV--IFFFVAA 266 (281)
Q Consensus 203 ~f~~tk~aEl~NGRLAMlG~~g~lv~E~iT-G~g~l~~l~~~~~~P~~~~~~~~~~~~--~~~~~~a 266 (281)
.-+++|.+|+|||||||+||+..++.|++| |+|+++|++.++|.|+.|+||+++|.+ ++|.+.|
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e~E~f~~fFl~gV~fNvVa 197 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFLFGVFFNVVA 197 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchhhHHHHHHHHHHHhhhhhc
Confidence 455789999999999999999999999999 999999999999999999998875543 4444444
No 16
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.36 E-value=5.8e-13 Score=124.01 Aligned_cols=69 Identities=26% Similarity=0.301 Sum_probs=56.2
Q ss_pred cccCCCCCCCCCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHH
Q 023481 169 KFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 239 (281)
Q Consensus 169 ~f~~~~~~p~G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~ 239 (281)
.|..+.+.|..+++ .+|||..||||||+++++.+++++.+||+|||+||+|++|++++|++++.|+++.
T Consensus 64 ~w~Pg~~~P~~LdG--~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~ 132 (267)
T PLN00098 64 LWFPGSSPPEWLDG--SLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN 132 (267)
T ss_pred ccCCCCCCCccCCC--CCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence 34444333444443 3799999999999988778999999999999999999999999999998887654
No 17
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.31 E-value=1.7e-12 Score=119.98 Aligned_cols=53 Identities=34% Similarity=0.413 Sum_probs=49.7
Q ss_pred CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChH
Q 023481 185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 237 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l 237 (281)
.+|||..||||||+++++.+++++.+||+|||+||+|++|++++|.+|+.|++
T Consensus 69 ~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 69 SLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 47999999999999887789999999999999999999999999999999876
No 18
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.20 E-value=7.9e-12 Score=115.65 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=47.7
Q ss_pred CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcCh
Q 023481 185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGA 236 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~ 236 (281)
.+|||..|||||++++++++++++.+||+|||+||+|++|++++|.++..+.
T Consensus 61 ~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~ 112 (252)
T PLN00147 61 TLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGI 112 (252)
T ss_pred CCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence 5899999999999887778999999999999999999999999999987654
No 19
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.20 E-value=1.3e-11 Score=113.68 Aligned_cols=68 Identities=24% Similarity=0.264 Sum_probs=55.3
Q ss_pred CCcccCCCCCCCCCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcCh
Q 023481 167 RGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGA 236 (281)
Q Consensus 167 ~~~f~~~~~~p~G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~ 236 (281)
+..|......|..+++ ..|||+.||||||+++++.+++++.+||+|||+||+|++|++++|++++.++
T Consensus 44 R~~w~Pg~~~P~~LdG--~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 44 RPTWLPGKAAAAHLDG--SLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CcccCCCCCCccccCC--CCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 3345444333444433 4799999999999987778999999999999999999999999999998765
No 20
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.15 E-value=2.2e-11 Score=112.83 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=49.6
Q ss_pred CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHH
Q 023481 185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALA 238 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~ 238 (281)
.+|||+.|||+||.++++.+++++.+||+|||+||+|++|++++|.++|...++
T Consensus 73 ~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~ 126 (255)
T PLN00170 73 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126 (255)
T ss_pred cCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence 479999999999998888899999999999999999999999999999886554
No 21
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.14 E-value=6.8e-11 Score=110.04 Aligned_cols=55 Identities=29% Similarity=0.320 Sum_probs=45.5
Q ss_pred CCCCCCcCCCCCCCCCCC-----cccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHH
Q 023481 185 IPPGKGLRSALGLKEGGP-----IFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 239 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~-----~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~ 239 (281)
..|||+.||||||++.+. +.++++.+||+|||+||+|++|++++|+++++|++.+
T Consensus 58 ~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~ 117 (262)
T PLN00048 58 TLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ 117 (262)
T ss_pred CCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence 479999999999974221 2346788999999999999999999999998887653
No 22
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.14 E-value=1.9e-11 Score=104.12 Aligned_cols=49 Identities=33% Similarity=0.344 Sum_probs=44.0
Q ss_pred CCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcC
Q 023481 186 PPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKG 235 (281)
Q Consensus 186 ~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g 235 (281)
++|+..|||+||+++. .+.+++.+|++|||+||+|+++++++|+.++.+
T Consensus 9 ~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~ 57 (156)
T PF00504_consen 9 VPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFP 57 (156)
T ss_dssp STTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred CCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence 5777789999999755 788999999999999999999999999998853
No 23
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.13 E-value=5.1e-11 Score=111.96 Aligned_cols=50 Identities=26% Similarity=0.179 Sum_probs=44.5
Q ss_pred CCCCCCcCCCCCCCCCCCc-------------------------------------------ccccchhhhhhhhHHHHH
Q 023481 185 IPPGKGLRSALGLKEGGPI-------------------------------------------FGFTKSNELFVGRLAQLG 221 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~~-------------------------------------------f~~tk~aEl~NGRLAMlG 221 (281)
..|||++||||||+++++. +++++.+||+|||+||+|
T Consensus 68 slpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwAMLA 147 (286)
T PLN00187 68 SLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLA 147 (286)
T ss_pred CCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHHHHH
Confidence 3799999999999876653 478899999999999999
Q ss_pred HHHHHHhHHhcCc
Q 023481 222 IAFSLIGEIITGK 234 (281)
Q Consensus 222 ~~g~lv~E~iTG~ 234 (281)
++|++++|+++|.
T Consensus 148 vaG~lvpEll~G~ 160 (286)
T PLN00187 148 TLGALSVEALTGV 160 (286)
T ss_pred hhchhhHHhccCC
Confidence 9999999998875
No 24
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.12 E-value=3.1e-11 Score=112.26 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=47.5
Q ss_pred CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcCh
Q 023481 185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGA 236 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~ 236 (281)
..|||..|||+||+++++.+.+++.+||+|||+||+|++|++++|++++.+.
T Consensus 69 ~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~ 120 (262)
T PLN00025 69 EFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV 120 (262)
T ss_pred cCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence 4699999999999987778999999999999999999999999999987654
No 25
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.08 E-value=9.8e-11 Score=107.95 Aligned_cols=49 Identities=27% Similarity=0.134 Sum_probs=45.0
Q ss_pred CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcC
Q 023481 185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITG 233 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG 233 (281)
..|||.+||||||+++++.+++++.+||+|||+||+|++|++++|.++.
T Consensus 60 ~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 60 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 5799999999999887778999999999999999999999999998753
No 26
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.08 E-value=6.1e-11 Score=109.34 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=44.4
Q ss_pred CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhc
Q 023481 185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIIT 232 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iT 232 (281)
.+|||++||||||+++++.+++++.+||+|||+||+|++|++++|.++
T Consensus 51 ~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 51 TMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 479999999999988777888999999999999999999999999875
No 27
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.06 E-value=5e-11 Score=113.49 Aligned_cols=53 Identities=25% Similarity=0.159 Sum_probs=47.9
Q ss_pred CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChH
Q 023481 185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 237 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l 237 (281)
..|||++||||||++++..+++++.+||+|||+||+|++|++++|++++.+..
T Consensus 126 ~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 126 ELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred CCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 47999999999999877788999999999999999999999999998876543
No 28
>PHA02337 putative high light inducible protein
Probab=99.04 E-value=1.5e-10 Score=77.17 Aligned_cols=32 Identities=41% Similarity=0.560 Sum_probs=30.0
Q ss_pred ccchhhhhHHHHHHHHHHHHHhhhhhcCcchh
Q 023481 100 FTKQNELFVGRVAMIGFAASLLGEGITGKGIL 131 (281)
Q Consensus 100 f~r~aEl~nGR~AMLG~~g~lv~E~~tg~gil 131 (281)
|+.++|+||||+||+||+..++.|+.||+++.
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip 32 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIP 32 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 67899999999999999999999999999864
No 29
>PHA02337 putative high light inducible protein
Probab=98.99 E-value=2.9e-10 Score=75.73 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=28.7
Q ss_pred ccchhhhhhhhHHHHHHHHHHHhHHhcCcCh
Q 023481 206 FTKSNELFVGRLAQLGIAFSLIGEIITGKGA 236 (281)
Q Consensus 206 ~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~ 236 (281)
|+..+|++|||+|||||+..+..|++||+++
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4678999999999999999999999999975
No 30
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=98.99 E-value=6.1e-10 Score=100.71 Aligned_cols=49 Identities=27% Similarity=0.325 Sum_probs=42.3
Q ss_pred CCCCcCCCCCCCCC-CCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcC
Q 023481 187 PGKGLRSALGLKEG-GPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKG 235 (281)
Q Consensus 187 PGd~ffDPLGL~~~-~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g 235 (281)
.||.+|||||+++. ++.+++++.+||+|||+||+|++|+++||.++.-|
T Consensus 54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG 103 (209)
T PLN00089 54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPG 103 (209)
T ss_pred CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 57778999999864 34688999999999999999999999999987544
No 31
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.97 E-value=6e-10 Score=98.04 Aligned_cols=53 Identities=47% Similarity=0.829 Sum_probs=48.5
Q ss_pred cchhhhhHHHHHHHHHHHHHhhhhhc-CcchhhhcccccCcccccchhHHHHHH
Q 023481 101 TKQNELFVGRVAMIGFAASLLGEGIT-GKGILAQLNLETGIPIYEAEPLLLFFI 153 (281)
Q Consensus 101 ~r~aEl~nGR~AMLG~~g~lv~E~~t-g~gil~ql~~~~G~p~~~~~pl~l~~v 153 (281)
++..|+||||+||+||+..++.|++| |+|++.|++.++|.|+++.++..++++
T Consensus 135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e~E~f~~fFl 188 (214)
T PLN00084 135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFL 188 (214)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchhhHHHHHHHH
Confidence 46799999999999999999999999 999999999999999999988765544
No 32
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=98.60 E-value=4.1e-08 Score=89.86 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=35.8
Q ss_pred chhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCC
Q 023481 208 KSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 246 (281)
Q Consensus 208 k~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~ 246 (281)
..+|+.|||+|||||+..++.|++||+|+++|++...+.
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~k 198 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFCK 198 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhH
Confidence 469999999999999999999999999999999876655
No 33
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=98.54 E-value=2.3e-08 Score=90.11 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=38.6
Q ss_pred CCCCCCcCCCCCCCC--CCCcccccchhhhhhhhHHHHHHHHHHHhHH
Q 023481 185 IPPGKGLRSALGLKE--GGPIFGFTKSNELFVGRLAQLGIAFSLIGEI 230 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~--~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~ 230 (281)
..|.+ +|||+|+++ +++++.+++.+||+|||+||+|++|++++|.
T Consensus 41 ~~p~g-~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 41 QAPLG-FFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCC-CCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 45665 589999974 4457889999999999999999999999996
No 34
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=98.44 E-value=2.2e-07 Score=85.15 Aligned_cols=35 Identities=37% Similarity=0.656 Sum_probs=33.0
Q ss_pred chhhhhHHHHHHHHHHHHHhhhhhcCcchhhhccc
Q 023481 102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL 136 (281)
Q Consensus 102 r~aEl~nGR~AMLG~~g~lv~E~~tg~gil~ql~~ 136 (281)
.++|++|||+||+||+.+++.|++||+|+++|++.
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 46999999999999999999999999999999875
No 35
>PLN02449 ferrochelatase
Probab=85.77 E-value=0.49 Score=48.22 Aligned_cols=30 Identities=33% Similarity=0.360 Sum_probs=26.6
Q ss_pred CCccCccchhhhhHHHHHHHHHHHHHhhhhhcCcchhh
Q 023481 95 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILA 132 (281)
Q Consensus 95 ~~~fGf~r~aEl~nGR~AMLG~~g~lv~E~~tg~gil~ 132 (281)
.|.|||++ +||+||+..++.|+++|+|++.
T Consensus 455 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 455 VWEWGWTK--------AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hhhhcccc--------hHHHHHHHHHHHHHHcCCCcCC
Confidence 46788887 9999999999999999999764
No 36
>PLN02449 ferrochelatase
Probab=82.76 E-value=0.73 Score=47.00 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhHHhcCcChHH
Q 023481 217 LAQLGIAFSLIGEIITGKGALA 238 (281)
Q Consensus 217 LAMlG~~g~lv~E~iTG~g~l~ 238 (281)
+||+||+.+++.|++||+|+|.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999874
No 37
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=24.04 E-value=40 Score=33.42 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=23.7
Q ss_pred CccchhhhhHHH------HHHHHHHHHHhhhhhcCcchh
Q 023481 99 GFTKQNELFVGR------VAMIGFAASLLGEGITGKGIL 131 (281)
Q Consensus 99 Gf~r~aEl~nGR------~AMLG~~g~lv~E~~tg~gil 131 (281)
-|+|+.|+..|- +=| =.+|+++.|+++|+..+
T Consensus 165 RWYRaPELLvGDtqYG~pVDi-WAiGCv~aEl~~G~pL~ 202 (396)
T KOG0593|consen 165 RWYRAPELLVGDTQYGKPVDI-WAIGCVFAELLTGEPLW 202 (396)
T ss_pred hhccChhhhcccCcCCCcccc-hhhhHHHHHHhcCCcCC
Confidence 489999999882 112 23689999999998653
Done!