Query 023481
Match_columns 281
No_of_seqs 215 out of 1326
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:32:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pl9_A Chlorophyll A-B binding 100.0 3.2E-36 1.1E-40 273.9 9.5 201 37-249 9-235 (243)
2 2wsc_3 LHCA3, type II chloroph 100.0 1.1E-33 3.9E-38 261.6 1.5 192 38-249 55-266 (276)
3 2bhw_A Chlorophyll A-B binding 100.0 3.2E-32 1.1E-36 246.5 6.6 180 38-249 20-218 (232)
4 2wsc_2 LHCA2, type II chloroph 100.0 6.3E-32 2.1E-36 249.2 5.0 185 38-247 63-258 (269)
5 2wsc_4 Chlorophyll A-B binding 100.0 1E-31 3.6E-36 245.7 2.2 181 38-249 52-241 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 4.3E-31 1.5E-35 240.4 2.4 176 39-249 45-230 (241)
7 2wsc_4 Chlorophyll A-B binding 99.2 2.1E-12 7.2E-17 118.1 0.1 53 185-237 69-121 (251)
8 2wsc_2 LHCA2, type II chloroph 99.1 6.5E-12 2.2E-16 115.9 1.4 53 185-237 80-132 (269)
9 2bhw_A Chlorophyll A-B binding 99.1 2.5E-11 8.6E-16 109.8 2.4 49 185-233 39-87 (232)
10 3pl9_A Chlorophyll A-B binding 99.0 4.8E-11 1.7E-15 108.6 2.1 63 170-234 14-119 (243)
11 2wsc_1 AT3G54890, LHCA1; photo 98.9 9.6E-11 3.3E-15 106.6 -0.6 49 185-233 61-109 (241)
12 2wsc_3 LHCA3, type II chloroph 98.9 2.7E-11 9.2E-16 112.1 -4.4 52 185-237 72-129 (276)
No 1
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=3.2e-36 Score=273.86 Aligned_cols=201 Identities=21% Similarity=0.202 Sum_probs=104.0
Q ss_pred CCCCccCCCCCchhhhhhcCCCCCccceEEecccccc--------------CCCCCCCcCCCCc--ccC-CCCCCCC--c
Q 023481 37 FSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTK--------------APPKTKKVESKPK--VED-GIFGTSG--G 97 (281)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~--------------a~~~~~~~~~~pk--~~d-g~~~~~~--~ 97 (281)
..+.+|.|...+|.||||++|+|++|||+.|.|..++ ..++.++.+.... +.. .+.+++. .
T Consensus 9 ~~r~~w~pg~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (243)
T 3pl9_A 9 TDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFG 88 (243)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred cccccccCCCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhh
Confidence 4689999999999999999999999999999988763 2233333111111 111 1233344 3
Q ss_pred cCccchhhhhHHHHHHHHHHHHHhhhhhcCcchhhh----c--c-cccCcccccchhHHHHHHHHHHHHHHhhhccCCcc
Q 023481 98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ----L--N-LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF 170 (281)
Q Consensus 98 fGf~r~aEl~nGR~AMLG~~g~lv~E~~tg~gil~q----l--~-~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f 170 (281)
+.|+|++|++||||||||++|++++|+++|..+..- + + ...+.+..... ..+++++++++|++|.+...+ .
T Consensus 89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i-~~l~~~qv~lmG~~E~~R~~~-~ 166 (243)
T 3pl9_A 89 LQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSM-TTLIWIEVLVIGYIEFQRNAE-L 166 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCH-HHHHHHHHHHHHHHHHHHHSC-C
T ss_pred hHHHHHhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccchhh-HHHHHHHHHHHHHHHHHhhcc-c
Confidence 678899999999999999999999999876432110 0 0 01122211111 133445567888887532111 0
Q ss_pred cCCCCCCCCCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481 171 VDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 171 ~~~~~~p~G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~ 249 (281)
+ + ....|||+. |||||+.++++.+.++|.+||+||||||+|++|+++||.+||+|+++||..|+.+|..
T Consensus 167 -~----~----~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~HladP~~ 235 (243)
T 3pl9_A 167 -D----T----EKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLH 235 (243)
T ss_dssp -C----T----TTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHCSGG
T ss_pred -C----C----ccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcch
Confidence 0 1 123589996 8999999887888899999999999999999999999999999999999999999963
No 2
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.97 E-value=1.1e-33 Score=261.57 Aligned_cols=192 Identities=20% Similarity=0.226 Sum_probs=96.6
Q ss_pred CCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHH
Q 023481 38 SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~ 117 (281)
.+.+|.|..++|.|||++.++|.+|||+.|.++ . . +++....+|+|++|++||||||||++
T Consensus 55 ~R~~wlP~~~~P~~L~G~~pGD~GfDPlGl~d~---~--~--------------~~~~~~~~~~r~aEl~hGR~AMLa~~ 115 (276)
T 2wsc_3 55 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP---E--G--------------TGGFIEPKWLAYGEIINGRYAMLGAV 115 (276)
T ss_dssp ------------------------------CCC---C--C--------------CCCSSSTTHHHHHHHHHHTTSCCTTT
T ss_pred CccccCCCCCCcccccCcCCCccCCCccccCCh---H--h--------------hcchhhHHHHHHHHhhcccchhhhHH
Confidence 578999999999999999999999999999211 0 0 11222458999999999999999999
Q ss_pred HHHhhhhhcCcchhhh------cccc----cCcccccchhHHHHHHHHHHHHHHhhhccCCcccC-C--CCCC-------
Q 023481 118 ASLLGEGITGKGILAQ------LNLE----TGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD-E--PDEP------- 177 (281)
Q Consensus 118 g~lv~E~~tg~gil~q------l~~~----~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f~~-~--~~~p------- 177 (281)
|++++|++++.|++.. +... .|...+...+..++++++.+++++|..... .+.. + ..++
T Consensus 116 G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~-~~~~pG~~g~~p~~g~~~~ 194 (276)
T 2wsc_3 116 GAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQ-DWAKPGSMGKQYFLGLEKG 194 (276)
T ss_dssp STTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTT-GGGSCCCCCCCCSSCSCCC
T ss_pred HHHHHHHhcccccccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhc-ccccCCccccccccccccc
Confidence 9999999998886521 1100 111112122222334455677887643211 1100 0 0000
Q ss_pred CCCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481 178 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 178 ~G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~ 249 (281)
.....+..||||.+|||+|+.++++++.++|.+||+||||||+||+++++||.+||+|+++||..|+.+|..
T Consensus 195 ~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~ 266 (276)
T 2wsc_3 195 LGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVH 266 (276)
T ss_dssp CCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC----------
T ss_pred ccccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCccc
Confidence 011224579999889999999877788899999999999999999999999999999999999999999964
No 3
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.97 E-value=3.2e-32 Score=246.50 Aligned_cols=180 Identities=24% Similarity=0.298 Sum_probs=129.1
Q ss_pred CCCccCCC--CCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHH
Q 023481 38 SHLMFNPL--SNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIG 115 (281)
Q Consensus 38 ~~~~~~~~--~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG 115 (281)
.+.+|.|. .++|.||||+.++|.+|||+.|.+. ...+.|+|++|++||||||||
T Consensus 20 ~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d------------------------~e~~~r~ReaELkHGR~AMLA 75 (232)
T 2bhw_A 20 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSAD------------------------PETFSKNRELEVIHSRWAMLG 75 (232)
T ss_dssp TCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCS------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccCccccCCccccCCcCCCCCCCCCCcCCCC------------------------HHHHHHHHHHHHhccchHHHh
Confidence 45667653 3889999999999999999998421 024778999999999999999
Q ss_pred HHHHHhhhhhcCcchh----hhc--cc---------ccCccc-ccch-hHHHHHHHHHHHHHHhhhccCCcccCCCCCCC
Q 023481 116 FAASLLGEGITGKGIL----AQL--NL---------ETGIPI-YEAE-PLLLFFILFTLLGAIGALGDRGKFVDEPDEPT 178 (281)
Q Consensus 116 ~~g~lv~E~~tg~gil----~ql--~~---------~~G~p~-~~~~-pl~l~~v~f~llgai~~l~~~~~f~~~~~~p~ 178 (281)
++|++++|+++..|+. .++ +. ..+.|. ...+ ...++++++.+++++|.....+. +.
T Consensus 76 ~~G~lv~E~l~~~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g-------~~ 148 (232)
T 2bhw_A 76 ALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG-------PL 148 (232)
T ss_dssp HHHHHHHHHHHTTTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEE-------TT
T ss_pred hhhhhhHHHhccCCcCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccC-------cc
Confidence 9999999987643321 011 00 011121 1111 12233445556777764321110 11
Q ss_pred CCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481 179 GLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 179 G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~ 249 (281)
+...+..|||+. |||+|+.++++++..+|.+|++||||||+||+++++||.+||+|+++|+..|+++|..
T Consensus 149 g~~~d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~ 218 (232)
T 2bhw_A 149 GEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 218 (232)
T ss_dssp EECSSSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTT
T ss_pred cccccccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHH
Confidence 111223689996 7999998776778899999999999999999999999999999999999999999964
No 4
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.97 E-value=6.3e-32 Score=249.17 Aligned_cols=185 Identities=22% Similarity=0.260 Sum_probs=106.9
Q ss_pred CCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHH
Q 023481 38 SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~ 117 (281)
.+..|.|..++|.|+|++.++|.+|||+.|.+. ...+.|+|++|++||||||||++
T Consensus 63 ~r~~wlpg~~~P~~L~G~~pGD~GfDPlGL~~d------------------------~e~~~~~r~aElkHGR~AMLA~~ 118 (269)
T 2wsc_2 63 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSD------------------------PESLRWNVQAELVHSRWAMLGAA 118 (269)
T ss_dssp -------------------------------CC------------------------CSCCTTTHHHHHHTHHHHTTTTH
T ss_pred CcccccCCCCCcccccCcCCCCCCCCccccCCC------------------------HHHHHHHHHHHHhcchHHHHHHH
Confidence 578899999999999999999999999998310 02357899999999999999999
Q ss_pred HHHhhhhhcCcchhhhcc-cccCcccccchhHHHHHHHHHHHHHHhhhccCCcccC-C--CCCC--CC---CCCCcCCCC
Q 023481 118 ASLLGEGITGKGILAQLN-LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD-E--PDEP--TG---LGGAVIPPG 188 (281)
Q Consensus 118 g~lv~E~~tg~gil~ql~-~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f~~-~--~~~p--~G---~~~~~~~PG 188 (281)
|++++|++++.|+..... ...|...+...+..++++++.+++++|...... +.. + ..++ .+ ...+..|||
T Consensus 119 G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~-~~~pG~~g~~p~f~~~~~~~~d~~~PG 197 (269)
T 2wsc_2 119 GIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWAD-ILNPGCVNTDPIFPNNKLTGTDVGYPG 197 (269)
T ss_dssp HHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTTHHHHHHHHHHTT-SSCCCCCSSSCCSSSCCSSTTSCSCTT
T ss_pred HhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHHHHHHHHHHHHhc-cccCCccccccccccccccccccCCCC
Confidence 999999999877652111 112322222222223344455788887532111 100 0 0000 00 112346999
Q ss_pred CCcCCCCCCCC-CCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhH-hhhCCC
Q 023481 189 KGLRSALGLKE-GGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN-IETGIP 247 (281)
Q Consensus 189 d~ffDPLGL~~-~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~-~~~~~P 247 (281)
+..|||||+.+ +++++.+++.+||+|||||||||+++++||.+||+|+++||. .|+.+|
T Consensus 198 ~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP 258 (269)
T 2wsc_2 198 GLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP 258 (269)
T ss_dssp CSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS
T ss_pred CcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc
Confidence 98789999975 455788999999999999999999999999999999999999 999999
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.96 E-value=1e-31 Score=245.66 Aligned_cols=181 Identities=25% Similarity=0.252 Sum_probs=102.6
Q ss_pred CCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHH
Q 023481 38 SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~ 117 (281)
.+..|.|..+.|.|+|++.|+|.+|||+.|.+. ...+.|+|++|++||||||+|++
T Consensus 52 ~r~~~~pg~~~p~~l~g~~pGd~gfDPlGl~~d------------------------~e~~~~~r~aEl~hGR~AMla~~ 107 (251)
T 2wsc_4 52 KKGEWLPGLASPGYLTGSLPGDNGFDPLGLAED------------------------PENLRWFVQAELVNGRWAMLGVA 107 (251)
T ss_dssp -----------------------------CCCS------------------------CCCTTTTHHHHHHHTHHHHHHHT
T ss_pred hhhhccCCCCCccccCCCcCCCCCCCccccCCC------------------------hHHHHHHHHHHHhccchHHHHHH
Confidence 478899988999999999999999999998421 12468899999999999999999
Q ss_pred HHHhhhhhcCcchhhhcc-cccCcccccchhHHHHHHHHHHHHHHhhhccCCcccC-C--CCCC--CC---CCCCcCCCC
Q 023481 118 ASLLGEGITGKGILAQLN-LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD-E--PDEP--TG---LGGAVIPPG 188 (281)
Q Consensus 118 g~lv~E~~tg~gil~ql~-~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f~~-~--~~~p--~G---~~~~~~~PG 188 (281)
|++++|++++.|+..... ...|...+...+..++++++++++++|...... +.. + ..+| .+ ...+..|||
T Consensus 108 G~~~~e~~~~~g~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~-~~~pG~~g~~p~f~~~~~~~~d~~yPG 186 (251)
T 2wsc_4 108 GMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQD-IKNPGSVNQDPIFKQYSLPAGEVGYPG 186 (251)
T ss_dssp TSSTTSSSCCSCSSCCCCCSCCCSSSCSSCSSCTTTTHHHHHHTTTHHHHHH-HSSCCCTTCCSSSCSSSSCCHHHHSSC
T ss_pred HHHHHHHhcCCCccCCccccccchHhhhccchHHHHHHHHHHHHHHHHHhhc-ccCCCcccccccccccccccccccCCC
Confidence 999999999988763211 112322221111112223344677776421100 000 0 0001 01 011346899
Q ss_pred CCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481 189 KGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 189 d~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~ 249 (281)
|. |||||+.+ +..+|.+||+|||| ||||+|+++||.+||++|++||..|+.+|..
T Consensus 187 g~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~ 241 (251)
T 2wsc_4 187 GI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWH 241 (251)
T ss_dssp CT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCC
T ss_pred Cc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhh
Confidence 96 89999975 56789999999999 9999999999999999999999999999963
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.96 E-value=4.3e-31 Score=240.35 Aligned_cols=176 Identities=19% Similarity=0.201 Sum_probs=114.3
Q ss_pred CCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHHH
Q 023481 39 HLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAA 118 (281)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~g 118 (281)
+..|.|...+|.|+|++.|+|.+|||+.|.+. ...+.|+|++|++||||||+|++|
T Consensus 45 ~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~------------------------~~~~~~~r~~El~hgR~AMla~~G 100 (241)
T 2wsc_1 45 AAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEV------------------------PANLERYKESELIHCRWAMLAVPG 100 (241)
T ss_dssp ----------------CTTSSCCCSSTTTTTT------------------------TTHHHHSHHHHHHHHHHHTTTSTT
T ss_pred ccccCCCCCCcccccCCCCCcCCcCccccCCC------------------------HHHHHHHHHHHHhhchhHHhhhhc
Confidence 35699999999999999999999999987421 124678999999999999999999
Q ss_pred HHhhhhhcCcchhh---hcccccCccccc------chhHHHHHHHHHHHHHHhhhccCCcccCCCCCCCCCCCCcCCCCC
Q 023481 119 SLLGEGITGKGILA---QLNLETGIPIYE------AEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGK 189 (281)
Q Consensus 119 ~lv~E~~tg~gil~---ql~~~~G~p~~~------~~pl~l~~v~f~llgai~~l~~~~~f~~~~~~p~G~~~~~~~PGd 189 (281)
++++|+++..++.. +.....|...+. .....++++.+.+++++|.+.. ... ++ ....|||+
T Consensus 101 ~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~----~~~--~~----~~~~yPgg 170 (241)
T 2wsc_1 101 ILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS----MEK--DP----EKKKYPGG 170 (241)
T ss_dssp SSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHT----SCC--SS----CCSSSCSC
T ss_pred ccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHH----hcc--CC----CCCCCCCC
Confidence 99999876432221 001111111111 1111233455666777764321 110 01 12358998
Q ss_pred CcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhH-HhcCcChHHHhHhhhCCCcc
Q 023481 190 GLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGE-IITGKGALAQLNIETGIPIN 249 (281)
Q Consensus 190 ~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E-~iTG~g~l~~l~~~~~~P~~ 249 (281)
+|||+|++++++++..+|.+||+||||||+|++|+++|| .+||+|+++||..|+.+|..
T Consensus 171 -~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~ 230 (241)
T 2wsc_1 171 -AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 230 (241)
T ss_dssp -CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC
T ss_pred -cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccc
Confidence 579999998877888999999999999999999999999 58999999999999999964
No 7
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.18 E-value=2.1e-12 Score=118.10 Aligned_cols=53 Identities=34% Similarity=0.423 Sum_probs=38.9
Q ss_pred CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChH
Q 023481 185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 237 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l 237 (281)
.+|||++||||||+++++.+++++.+||+|||+||+|++|++++|++++.|++
T Consensus 69 ~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 69 SLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp ------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 47999999999999888899999999999999999999999999999998876
No 8
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.14 E-value=6.5e-12 Score=115.89 Aligned_cols=53 Identities=32% Similarity=0.312 Sum_probs=36.3
Q ss_pred CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChH
Q 023481 185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 237 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l 237 (281)
..|||++||||||+++++.+++++.+||+|||+||+|++|++++|++++.|++
T Consensus 80 ~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 80 SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp --------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 47999999999998888899999999999999999999999999999987754
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.08 E-value=2.5e-11 Score=109.79 Aligned_cols=49 Identities=24% Similarity=0.256 Sum_probs=45.1
Q ss_pred CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcC
Q 023481 185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITG 233 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG 233 (281)
..|||.+||||||+++++.+++++.+||+|||+||+|++|++++|+++.
T Consensus 39 ~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 39 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 4799999999999987778999999999999999999999999998764
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.03 E-value=4.8e-11 Score=108.62 Aligned_cols=63 Identities=25% Similarity=0.192 Sum_probs=28.9
Q ss_pred ccCCCCCCCCCCCCcCCCCCCcCCCCCCCCCCC-------------------------------------------cccc
Q 023481 170 FVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGP-------------------------------------------IFGF 206 (281)
Q Consensus 170 f~~~~~~p~G~~~~~~~PGd~ffDPLGL~~~~~-------------------------------------------~f~~ 206 (281)
|..+...|..+++ ..|||++||||||+++++ .+++
T Consensus 14 w~pg~~~P~~LdG--slpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r 91 (243)
T 3pl9_A 14 WYPGAKAPEYLDG--SLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQR 91 (243)
T ss_dssp ----------------------------------------------------------------------------CCHH
T ss_pred ccCCCCCcccccC--CCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHH
Confidence 4333333444433 379999999999987754 3678
Q ss_pred cchhhhhhhhHHHHHHHHHHHhHHhcCc
Q 023481 207 TKSNELFVGRLAQLGIAFSLIGEIITGK 234 (281)
Q Consensus 207 tk~aEl~NGRLAMlG~~g~lv~E~iTG~ 234 (281)
++.+||+|||+||+|++|++++|+.+|-
T Consensus 92 ~ReaELkHGRwAMLAvlG~lvpE~l~g~ 119 (243)
T 3pl9_A 92 FRECELIHGRWAMLATLGALTVEGLTGI 119 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhhhcchhHHHHHHHHHhHHhhcCc
Confidence 8999999999999999999999998763
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=98.92 E-value=9.6e-11 Score=106.60 Aligned_cols=49 Identities=29% Similarity=0.194 Sum_probs=44.9
Q ss_pred CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcC
Q 023481 185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITG 233 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG 233 (281)
..|||.+|||+||+++++.+++++.+||+|||+||+|++|++++|.++.
T Consensus 61 ~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred CCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence 4799999999999988888999999999999999999999999998753
No 12
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=98.91 E-value=2.7e-11 Score=112.13 Aligned_cols=52 Identities=27% Similarity=0.292 Sum_probs=34.9
Q ss_pred CCCCCCcCCCCCCCCCCCcc------cccchhhhhhhhHHHHHHHHHHHhHHhcCcChH
Q 023481 185 IPPGKGLRSALGLKEGGPIF------GFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 237 (281)
Q Consensus 185 ~~PGd~ffDPLGL~~~~~~f------~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l 237 (281)
..|||++|||||| .+++.+ ++++.+|++|||+||+|++|++++|++++.|++
T Consensus 72 ~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 72 SLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp --------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred cCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 3699999999999 455678 899999999999999999999999999988765
Done!