BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023482
(281 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|8570453|gb|AAF76480.1|AC020622_14 Identical to dimethyladenosine transferase (PFC1) from Arabidopsis
thaliana gb|AF051326 and contains a Ribosomal RNA
Adenine Dimethylases PF|00398 domain. This gene may be
cut off, partial [Arabidopsis thaliana]
Length = 239
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 149/193 (77%), Positives = 169/193 (87%), Gaps = 3/193 (1%)
Query: 91 IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
+ C +S DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 47 VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106
Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
GTGSLTNVL+N GATVLAIEKD HMV LV ERFA D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166
Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
R+ S S AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226
Query: 268 EYRPINIFVNFYS 280
EYRPINI +NFYS
Sbjct: 227 EYRPINILINFYS 239
>gi|297842936|ref|XP_002889349.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp.
lyrata]
gi|297335191|gb|EFH65608.1| hypothetical protein ARALYDRAFT_470090 [Arabidopsis lyrata subsp.
lyrata]
Length = 342
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 149/193 (77%), Positives = 169/193 (87%), Gaps = 3/193 (1%)
Query: 91 IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
+ C +S DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 46 VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 105
Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
GTGSLTNVL+N GATVLAIEKD HMV LV ERFA D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 106 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 165
Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
R+ S S AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 166 SRRLSHPDSSLAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 225
Query: 268 EYRPINIFVNFYS 280
EYRPINI +NFYS
Sbjct: 226 EYRPINILINFYS 238
>gi|15220982|ref|NP_171690.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
thaliana]
gi|3005590|gb|AAC09322.1| dimethyladenosine transferase [Arabidopsis thaliana]
gi|26449914|dbj|BAC42078.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
gi|28827572|gb|AAO50630.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
gi|332189223|gb|AEE27344.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
thaliana]
Length = 343
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 149/193 (77%), Positives = 169/193 (87%), Gaps = 3/193 (1%)
Query: 91 IVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150
+ C +S DDYH+T+K+LNS+GRFPRKSLGQHYMLNS+INDQLA+AA V+EGD VLEIGP
Sbjct: 47 VSCGKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLASAADVKEGDFVLEIGP 106
Query: 151 GTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210
GTGSLTNVL+N GATVLAIEKD HMV LV ERFA D+ KVLQEDFVKCHIRSHMLS+ E
Sbjct: 107 GTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQEDFVKCHIRSHMLSILE 166
Query: 211 RRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
R+ S S AKVV+N+PFNISTDV+K LLPMGDIFS+VVLLLQ+E ALRLVEP+LRTS
Sbjct: 167 TRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQDEAALRLVEPALRTS 226
Query: 268 EYRPINIFVNFYS 280
EYRPINI +NFYS
Sbjct: 227 EYRPINILINFYS 239
>gi|225453766|ref|XP_002270274.1| PREDICTED: ribosomal RNA small subunit methyltransferase A [Vitis
vinifera]
gi|296089082|emb|CBI38785.3| unnamed protein product [Vitis vinifera]
Length = 335
Score = 312 bits (800), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 153/211 (72%), Positives = 175/211 (82%), Gaps = 6/211 (2%)
Query: 75 AHSSIAGVQKGAASA--CIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQ 132
+H + + +G+ CI CARSQDD YHAT+ ALNSKGR PRKSLGQHYMLNS IN+Q
Sbjct: 22 SHPKPSSLVQGSTRTPLCITCARSQDD-YHATLDALNSKGRTPRKSLGQHYMLNSSINEQ 80
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
LA A +++GD++LEIGPGTGSLTNVLL+AGATVLAIEKD HM LVRERFA D+LKVL
Sbjct: 81 LADTADIRDGDVILEIGPGTGSLTNVLLDAGATVLAIEKDAHMAALVRERFAVTDRLKVL 140
Query: 193 QEDFVKCHIRSHMLSLFERRKSS---SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVL 249
QEDF+KCHI H+ SL E +K+ S +AKVV+NIPFNISTDV+K LLPMGDIFSEVVL
Sbjct: 141 QEDFMKCHIHPHLFSLLESKKAKNKESRYAKVVSNIPFNISTDVVKILLPMGDIFSEVVL 200
Query: 250 LLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
LLQ+ETALRLVE SLRT EYRPINIFVNFYS
Sbjct: 201 LLQDETALRLVEASLRTQEYRPINIFVNFYS 231
>gi|356568329|ref|XP_003552364.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like
[Glycine max]
Length = 341
Score = 309 bits (791), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 156/221 (70%), Positives = 176/221 (79%), Gaps = 9/221 (4%)
Query: 67 LLPKPTRPAHSSIAGVQKGAASACIVCARS-------QDDDYHATIKALNSKGRFPRKSL 119
LL + +PAH S AGV++ + +VCA DDYHAT+KALNSKGRFPRKSL
Sbjct: 19 LLNRHHKPAHDSTAGVRR--RTPYVVCAEKGSRASTRSADDYHATLKALNSKGRFPRKSL 76
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
GQHYMLN++INDQLA AA V++GD+VLEIGPGTGSLTNVLLN+GA VLA+EKD+HM LV
Sbjct: 77 GQHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVLLNSGAFVLAVEKDKHMAALV 136
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
ERF+S +LKVL ED VKCH+RSHM SL S AKVVANIPFNISTDVIK LLP
Sbjct: 137 SERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSINPESRKAKVVANIPFNISTDVIKLLLP 196
Query: 240 MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
MGDIFSEVVLLLQEETA+RLV SLRT EYRPIN+FVNFYS
Sbjct: 197 MGDIFSEVVLLLQEETAVRLVVSSLRTPEYRPINVFVNFYS 237
>gi|224130164|ref|XP_002320768.1| predicted protein [Populus trichocarpa]
gi|222861541|gb|EEE99083.1| predicted protein [Populus trichocarpa]
Length = 210
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/210 (73%), Positives = 173/210 (82%), Gaps = 6/210 (2%)
Query: 75 AHSSIAGVQKGAASACIVCA-RSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQL 133
AH+S+ K I CA + DDYHAT+KALNS+ R PRKSLGQHYMLN EIN+QL
Sbjct: 3 AHNSLTSPPKRTLD--ITCASKRSPDDYHATLKALNSRDRRPRKSLGQHYMLNDEINEQL 60
Query: 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193
A+A V+EGD++LEIGPGTGSLTNVL++AGATVLAIEKD HM LVRERFA ++ KVLQ
Sbjct: 61 VASANVEEGDLILEIGPGTGSLTNVLIDAGATVLAIEKDAHMAALVRERFADTNRFKVLQ 120
Query: 194 EDFVKCHIRSHMLSLFERRKSSSG---FAKVVANIPFNISTDVIKQLLPMGDIFSEVVLL 250
EDF+KCHIRSHMLS+ E S S +AKVVANIPFNISTDVIKQLLP GDIFSE+VLL
Sbjct: 121 EDFIKCHIRSHMLSMLESMGSLSEKPRYAKVVANIPFNISTDVIKQLLPTGDIFSEIVLL 180
Query: 251 LQEETALRLVEPSLRTSEYRPINIFVNFYS 280
LQ+ETALRLVE SLRTSEYRPINIFVNFYS
Sbjct: 181 LQDETALRLVESSLRTSEYRPINIFVNFYS 210
>gi|356532056|ref|XP_003534590.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like
[Glycine max]
Length = 341
Score = 306 bits (783), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 154/220 (70%), Positives = 174/220 (79%), Gaps = 7/220 (3%)
Query: 67 LLPKPTRPAHSSIAGVQK------GAASACIVCARSQDDDYHATIKALNSKGRFPRKSLG 120
LL + +PAH S AGV+ + + RS DD YHAT+KALNSKGRFPRKSLG
Sbjct: 19 LLNRHHKPAHDSTAGVRNRTPYVVSSERSSTASTRSADD-YHATLKALNSKGRFPRKSLG 77
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
QHYMLN++INDQLA AA V++GD+VLEIGPGTGSLTNVLLN+GA VLA+EKD+HM LV
Sbjct: 78 QHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVLLNSGAFVLAVEKDKHMAALVS 137
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
ERF+S +LKVL ED VKCH+RSHM SL S AKVVANIPFNISTDVIK LLPM
Sbjct: 138 ERFSSTGKLKVLTEDIVKCHVRSHMSSLVGSINPESRKAKVVANIPFNISTDVIKLLLPM 197
Query: 241 GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
GDIFSEVVLLLQEETA+RLV SLRT EYRP+N+FVNFYS
Sbjct: 198 GDIFSEVVLLLQEETAVRLVVSSLRTPEYRPVNVFVNFYS 237
>gi|449432199|ref|XP_004133887.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like
[Cucumis sativus]
Length = 347
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/185 (78%), Positives = 165/185 (89%), Gaps = 3/185 (1%)
Query: 99 DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
DDYH+TI+ALNSKGR PRKSLGQHYMLNS IN+QLAAAA V+EGD+VLEIGPGTGSLTNV
Sbjct: 59 DDYHSTIRALNSKGRVPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTNV 118
Query: 159 LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF---ERRKSS 215
L+N+GATVLA+EKD +M GLV ERFA+ ++LKVL EDFVKC++ SHM+SL E ++
Sbjct: 119 LINSGATVLAVEKDSYMAGLVDERFANTNRLKVLNEDFVKCNVSSHMMSLLKSIELSEAR 178
Query: 216 SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIF 275
S AKVV+NIPFNISTD+IKQLLPMGDIFSEVVLLLQEE ALRLVE SLRTSEYRPIN+F
Sbjct: 179 SQPAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEEAALRLVETSLRTSEYRPINVF 238
Query: 276 VNFYS 280
VNFYS
Sbjct: 239 VNFYS 243
>gi|255541450|ref|XP_002511789.1| dimethyladenosine transferase, putative [Ricinus communis]
gi|223548969|gb|EEF50458.1| dimethyladenosine transferase, putative [Ricinus communis]
Length = 338
Score = 299 bits (765), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 150/215 (69%), Positives = 169/215 (78%), Gaps = 6/215 (2%)
Query: 70 KPTRPAHSSIAGVQKGAASACIVC-ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSE 128
KP+ P+ + I +K I C + DDY AT+KALNS+GR PRKSLGQHYMLNSE
Sbjct: 22 KPSVPSRNGITSARKK--RVLIRCDTKRSSDDYRATLKALNSRGRRPRKSLGQHYMLNSE 79
Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQ 188
+N+QL AA V+EGD+VLEIGPGTGSLTN+LL+ GATVLAIEKD HM +VRERF+ D+
Sbjct: 80 VNEQLVCAANVEEGDLVLEIGPGTGSLTNLLLDTGATVLAIEKDAHMAAIVRERFSHTDR 139
Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKS---SSGFAKVVANIPFNISTDVIKQLLPMGDIFS 245
K+LQEDFVKCHIR HMLSL E S AKVVANIPFNISTDV+KQLLPMGDI S
Sbjct: 140 FKLLQEDFVKCHIRFHMLSLLENMTSLNEKPRRAKVVANIPFNISTDVVKQLLPMGDIIS 199
Query: 246 EVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
EV LLLQEETA RLVE SLRTSEYRPIN+FVNFYS
Sbjct: 200 EVALLLQEETASRLVESSLRTSEYRPINVFVNFYS 234
>gi|357507115|ref|XP_003623846.1| Ribosomal RNA small subunit methyltransferase A [Medicago
truncatula]
gi|124360236|gb|ABN08249.1| SAM (and some other nucleotide) binding motif [Medicago truncatula]
gi|124360864|gb|ABN08836.1| SAM (and some other nucleotide) binding motif [Medicago truncatula]
gi|355498861|gb|AES80064.1| Ribosomal RNA small subunit methyltransferase A [Medicago
truncatula]
Length = 349
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 142/200 (71%), Positives = 160/200 (80%), Gaps = 10/200 (5%)
Query: 91 IVCARSQD-------DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGD 143
+ C R + DDYHAT+KALNSKGR P+KSLGQ+YMLNS+IN+QL A V+EGD
Sbjct: 46 VACGRGNNRASTTNKDDYHATLKALNSKGRSPKKSLGQNYMLNSDINEQLVGVAGVEEGD 105
Query: 144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203
+VLEIGPGTGSLTN L+N+GA VLA+EKD+HM LV ERF+S +LKVL ED VKCH+RS
Sbjct: 106 VVLEIGPGTGSLTNTLINSGAFVLAVEKDKHMAALVSERFSSTGKLKVLNEDIVKCHVRS 165
Query: 204 HMLSLF---ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
H+ SL E S + AKVVANIPF ISTDVIK LLPMGDIFSEVVLLLQEETALR V
Sbjct: 166 HISSLVGSTEDIDSDTRKAKVVANIPFYISTDVIKLLLPMGDIFSEVVLLLQEETALRWV 225
Query: 261 EPSLRTSEYRPINIFVNFYS 280
EPSLRT EYRPINIFVNFYS
Sbjct: 226 EPSLRTPEYRPINIFVNFYS 245
>gi|300681318|emb|CAZ96033.1| dimethyladenosine transferase [Sorghum bicolor]
Length = 343
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 118/184 (64%), Positives = 153/184 (83%), Gaps = 2/184 (1%)
Query: 99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
DDYH+TI++LNS+GR PRKSLGQ+YMLNS++N++L AAA V+EGD+VLEIGPGTGSLT
Sbjct: 56 DDYHSTIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTA 115
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
LL AGATV A+EKD+HM LV++RF S +QLKV++ED K HIRSH L E+ ++
Sbjct: 116 ALLQAGATVFAVEKDKHMATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYHATK 175
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AKVV+N+PFN+S++V+K LLPMGD+FS VVL+LQ+ETA+RL + S++ EYRPIN+FV
Sbjct: 176 KLAKVVSNLPFNVSSEVVKLLLPMGDVFSVVVLMLQDETAVRLADASIQIPEYRPINVFV 235
Query: 277 NFYS 280
NFYS
Sbjct: 236 NFYS 239
>gi|222622078|gb|EEE56210.1| hypothetical protein OsJ_05183 [Oryza sativa Japonica Group]
Length = 314
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/195 (61%), Positives = 157/195 (80%), Gaps = 3/195 (1%)
Query: 89 ACIVCARSQ-DDDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVL 146
A +V A S D YH+TI++LNS+GR PRKSLGQ+YMLNS++N++L AAA V+EGD+VL
Sbjct: 44 ATVVSAASGVTDGYHSTIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVL 103
Query: 147 EIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206
EIGPGTGSLT LL+AGATV A+EKD+HM LV +RF S +QLK+++ED K ++RSH L
Sbjct: 104 EIGPGTGSLTAALLDAGATVFAVEKDKHMATLVNDRFGSTEQLKIIEEDITKFNVRSHFL 163
Query: 207 SLFERRKSSS-GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLR 265
E + + +AKVV+N+PFN+ST+V+K LLPMGD+FS +VLLLQ+ETALR + S++
Sbjct: 164 PFLEEKSHHTRKYAKVVSNLPFNVSTEVVKLLLPMGDVFSVMVLLLQDETALRFADASIQ 223
Query: 266 TSEYRPINIFVNFYS 280
T EYRPIN+FVNFYS
Sbjct: 224 TPEYRPINVFVNFYS 238
>gi|218189952|gb|EEC72379.1| hypothetical protein OsI_05650 [Oryza sativa Indica Group]
Length = 603
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/195 (61%), Positives = 157/195 (80%), Gaps = 3/195 (1%)
Query: 89 ACIVCARSQ-DDDYHATIKALNSKGRF-PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVL 146
A +V A S D YH+TI++LNS+GR PRKSLGQ+YMLNS++N++L AAA V+EGD+VL
Sbjct: 44 ATVVSAASGVTDGYHSTIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVL 103
Query: 147 EIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206
EIGPGTGSLT LL+AGATV A+EKD+HM LV +RF S +QLK+++ED K ++RSH L
Sbjct: 104 EIGPGTGSLTAALLDAGATVFAVEKDKHMATLVNDRFGSTEQLKIIEEDITKFNVRSHFL 163
Query: 207 SLFERRK-SSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLR 265
E + + +AKVV+N+PFN+ST+V+K LLPMGD+FS +VLLLQ+ETALR + S++
Sbjct: 164 PFLEEKSHHTRKYAKVVSNLPFNVSTEVVKLLLPMGDVFSVMVLLLQDETALRFADASIQ 223
Query: 266 TSEYRPINIFVNFYS 280
T EYRPIN+FVNFYS
Sbjct: 224 TPEYRPINVFVNFYS 238
>gi|300681352|emb|CAZ96099.1| dimethyladenosine transferase [Saccharum hybrid cultivar R570]
Length = 333
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 117/184 (63%), Positives = 153/184 (83%), Gaps = 2/184 (1%)
Query: 99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
DDYH+TI++LNS+GR PRKSLGQ+YMLNS++N++L AAA V+EGD+VLEIGPGTGSLT
Sbjct: 56 DDYHSTIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTA 115
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
LL AGATV A+EKD+HM LV++RF S +QLKV++ED K HIRSH L E+ ++
Sbjct: 116 ALLQAGATVFAVEKDKHMAALVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKCHATK 175
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AKVV+N+PFN+ST+V++ LLPMGD+FS VVL+LQ+ETA+RL + S+++ EYR IN+FV
Sbjct: 176 KLAKVVSNLPFNVSTEVVRLLLPMGDVFSVVVLMLQDETAVRLADASIQSPEYRLINVFV 235
Query: 277 NFYS 280
NFYS
Sbjct: 236 NFYS 239
>gi|413926671|gb|AFW66603.1| hypothetical protein ZEAMMB73_716849 [Zea mays]
Length = 331
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/184 (62%), Positives = 152/184 (82%), Gaps = 2/184 (1%)
Query: 99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
DDYH+TI++LNS+GR PRKSLGQ+Y LNS++N++L AAA V+EGD+VLEIGPGTGSLT+
Sbjct: 51 DDYHSTIRSLNSRGRHVPRKSLGQNYTLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTS 110
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
LL AGATV A+EKD+HM LV++RF S +QLKV++ED K HIRSH L E+ ++
Sbjct: 111 ALLQAGATVFAVEKDKHMATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYGATK 170
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AKV +N+PFN+ST+V+K LLPMGD+FS VVL+LQ+ETA+RL + S+++ EYR IN+FV
Sbjct: 171 KLAKVASNLPFNVSTEVVKLLLPMGDVFSVVVLMLQDETAVRLADASIQSPEYRSINVFV 230
Query: 277 NFYS 280
+FYS
Sbjct: 231 DFYS 234
>gi|413926672|gb|AFW66604.1| hypothetical protein ZEAMMB73_716849 [Zea mays]
Length = 366
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/184 (62%), Positives = 152/184 (82%), Gaps = 2/184 (1%)
Query: 99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
DDYH+TI++LNS+GR PRKSLGQ+Y LNS++N++L AAA V+EGD+VLEIGPGTGSLT+
Sbjct: 51 DDYHSTIRSLNSRGRHVPRKSLGQNYTLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTS 110
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
LL AGATV A+EKD+HM LV++RF S +QLKV++ED K HIRSH L E+ ++
Sbjct: 111 ALLQAGATVFAVEKDKHMATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYGATK 170
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AKV +N+PFN+ST+V+K LLPMGD+FS VVL+LQ+ETA+RL + S+++ EYR IN+FV
Sbjct: 171 KLAKVASNLPFNVSTEVVKLLLPMGDVFSVVVLMLQDETAVRLADASIQSPEYRSINVFV 230
Query: 277 NFYS 280
+FYS
Sbjct: 231 DFYS 234
>gi|294464127|gb|ADE77582.1| unknown [Picea sitchensis]
Length = 351
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 125/211 (59%), Positives = 154/211 (72%), Gaps = 8/211 (3%)
Query: 73 RPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQ 132
+P+ SS+ G +A CA +DDYH+T+K L S+GRFPRKSLGQHYMLNS IN+
Sbjct: 42 KPSMSSL-----GVPAASPRCALRAEDDYHSTLKVLQSRGRFPRKSLGQHYMLNSAINEL 96
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192
+ A ++EGD+VLEIGPGTG+LTN L+NAGA V AIEKD HM LV ERF + ++KV+
Sbjct: 97 MVKEAQLKEGDVVLEIGPGTGALTNALVNAGAHVFAIEKDAHMAMLVSERFNNNGKVKVV 156
Query: 193 QEDFVKCHIRSHMLSLFERRKSSSGF---AKVVANIPFNISTDVIKQLLPMGDIFSEVVL 249
QEDF +CHI +LS S + AKVV+N+PFNI+TDV+K LLPMGD+FS VVL
Sbjct: 157 QEDFTRCHIEPQILSFSTSIAPGSNYGQMAKVVSNLPFNIATDVLKLLLPMGDMFSHVVL 216
Query: 250 LLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
LLQ+E ALR+V S T EYR INIFVNFYS
Sbjct: 217 LLQDEMALRVVGSSPGTPEYRQINIFVNFYS 247
>gi|413926673|gb|AFW66605.1| dimethyladenosine transferase [Zea mays]
Length = 338
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/184 (62%), Positives = 152/184 (82%), Gaps = 2/184 (1%)
Query: 99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
DDYH+TI++LNS+GR PRKSLGQ+Y LNS++N++L AAA V+EGD+VLEIGPGTGSLT+
Sbjct: 51 DDYHSTIRSLNSRGRHVPRKSLGQNYTLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTS 110
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
LL AGATV A+EKD+HM LV++RF S +QLKV++ED K HIRSH L E+ ++
Sbjct: 111 ALLQAGATVFAVEKDKHMATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYGATK 170
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AKV +N+PFN+ST+V+K LLPMGD+FS VVL+LQ+ETA+RL + S+++ EYR IN+FV
Sbjct: 171 KLAKVASNLPFNVSTEVVKLLLPMGDVFSVVVLMLQDETAVRLADASIQSPEYRSINVFV 230
Query: 277 NFYS 280
+FYS
Sbjct: 231 DFYS 234
>gi|226492680|ref|NP_001151385.1| LOC100285018 [Zea mays]
gi|195646350|gb|ACG42643.1| dimethyladenosine transferase [Zea mays]
Length = 337
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/184 (61%), Positives = 151/184 (82%), Gaps = 2/184 (1%)
Query: 99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
DDYH+TI++LNS+GR PRKSLGQ+Y LNS++N++L AAA V++GD+VLEIGPGTGSLT+
Sbjct: 50 DDYHSTIRSLNSRGRHVPRKSLGQNYTLNSKVNEELVAAAGVEDGDVVLEIGPGTGSLTS 109
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSS 216
LL AGATV A+EKD+HM LV++RF S +QLKV++ED K HIRSH L E+ ++
Sbjct: 110 ALLQAGATVFAVEKDKHMATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYGATK 169
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AKV +N+PFN+ST+V+K LLPMGD+FS VVL+LQ+ETA+R + S+++ EYR IN+FV
Sbjct: 170 KLAKVASNLPFNVSTEVVKLLLPMGDVFSVVVLMLQDETAVRFADASIQSPEYRSINVFV 229
Query: 277 NFYS 280
+FYS
Sbjct: 230 DFYS 233
>gi|357145475|ref|XP_003573655.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like
[Brachypodium distachyon]
Length = 344
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/185 (62%), Positives = 152/185 (82%), Gaps = 3/185 (1%)
Query: 99 DDYHATIKALNSKGR--FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLT 156
DDYH+TI++LNS GR PRKSLGQ+YMLN+ +N++L AAA V+EGD+VLEIGPGTGSLT
Sbjct: 56 DDYHSTIRSLNSGGRRLVPRKSLGQNYMLNARVNEELVAAAGVEEGDVVLEIGPGTGSLT 115
Query: 157 NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS-S 215
LL AGATV+A+EKD+ M LV++RF S +QLK+++ED K H+ SH L + E + +
Sbjct: 116 AALLAAGATVVAVEKDKQMAALVKDRFGSTEQLKIIEEDITKFHVNSHFLPILEEKSHCT 175
Query: 216 SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIF 275
+AKVV+N+PFN+ST+V+KQ+LPMGD+FS +VL+LQ+ETALRL S++T EYRPIN+F
Sbjct: 176 KKYAKVVSNLPFNVSTEVVKQILPMGDVFSVMVLMLQDETALRLANASIQTPEYRPINVF 235
Query: 276 VNFYS 280
VNFYS
Sbjct: 236 VNFYS 240
>gi|242063872|ref|XP_002453225.1| hypothetical protein SORBIDRAFT_04g001913 [Sorghum bicolor]
gi|241933056|gb|EES06201.1| hypothetical protein SORBIDRAFT_04g001913 [Sorghum bicolor]
Length = 261
Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 107/167 (64%), Positives = 138/167 (82%), Gaps = 1/167 (0%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRKSLGQ+YMLNS++N++L AAA V+EGD+VLEIGPGTGSLT LL AGATV A+EKD+H
Sbjct: 2 PRKSLGQNYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQAGATVFAVEKDKH 61
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSSGFAKVVANIPFNISTDV 233
M LV++RF S +QLKV++ED K HIRSH L E+ ++ AKVV+N+PFN+S++V
Sbjct: 62 MATLVKDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLAKVVSNLPFNVSSEV 121
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+K LLPMGD+FS VVL+LQ+ETA+RL + S++ EYRPIN+FVNFYS
Sbjct: 122 VKLLLPMGDVFSVVVLMLQDETAVRLADASIQIPEYRPINVFVNFYS 168
>gi|300681336|emb|CAZ96067.1| dimethyladenosine transferase [Saccharum hybrid cultivar R570]
Length = 319
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 100/162 (61%), Positives = 132/162 (81%), Gaps = 1/162 (0%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
G +YMLNS++N++L AAA V+EGD+VLEIGPGTGSLT LL AGATV A+EKD+HM L+
Sbjct: 54 GANYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALLQAGATVFAVEKDKHMATLI 113
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSSGFAKVVANIPFNISTDVIKQLL 238
++RF S +QLKV++ED K HIRSH L E+ ++ AKVV+N+PFN+ST+V+K LL
Sbjct: 114 KDRFGSTEQLKVIEEDITKFHIRSHFLPFMKEKYHATKKLAKVVSNLPFNVSTEVVKLLL 173
Query: 239 PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
PMGD+FS VV++LQ+ETA+RL + S++ EYRPIN+FVNFYS
Sbjct: 174 PMGDVFSVVVIMLQDETAVRLADTSIQIPEYRPINVFVNFYS 215
>gi|302818711|ref|XP_002991028.1| hypothetical protein SELMODRAFT_185793 [Selaginella moellendorffii]
gi|300141122|gb|EFJ07836.1| hypothetical protein SELMODRAFT_185793 [Selaginella moellendorffii]
Length = 344
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/211 (53%), Positives = 151/211 (71%), Gaps = 4/211 (1%)
Query: 71 PTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEIN 130
P R A SI+ GA S+ + + ++Y T++AL SK R P++ LGQ+YM+NS IN
Sbjct: 22 PCRGAKCSISC---GATSSSSSSSSNSSENYRRTLEALKSKNRRPKRWLGQNYMVNSNIN 78
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
D++ AA +Q GD+VLEIGPGTG+LT+ LL AGA V+A+EKD MV LV ERF ++K
Sbjct: 79 DEIVRAAEIQPGDLVLEIGPGTGALTDSLLCAGAYVIAVEKDPDMVSLVSERFKDNPRVK 138
Query: 191 VL-QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVL 249
VL Q+D +K HIR H+ + E KS S KVV+N+PFNI+TDV+K+LLPMGD+FS VVL
Sbjct: 139 VLFQDDILKWHIRLHLSNWMETIKSPSKLVKVVSNLPFNITTDVVKKLLPMGDLFSNVVL 198
Query: 250 LLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
LLQ+E A R ++ S + EYRPI+IF+ F+S
Sbjct: 199 LLQDEAAARFIDDSPKGDEYRPISIFIRFFS 229
>gi|302820073|ref|XP_002991705.1| hypothetical protein SELMODRAFT_133904 [Selaginella moellendorffii]
gi|300140554|gb|EFJ07276.1| hypothetical protein SELMODRAFT_133904 [Selaginella moellendorffii]
Length = 344
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/211 (53%), Positives = 151/211 (71%), Gaps = 4/211 (1%)
Query: 71 PTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEIN 130
P R A SI+ GA S+ + + ++Y T++AL SK R P++ LGQ+YM+NS IN
Sbjct: 22 PCRGAKCSISC---GATSSSSSSSSNSSENYRRTLEALKSKNRRPKRWLGQNYMVNSNIN 78
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
D++ AA +Q GD+VLEIGPGTG+LT+ LL AGA V+A+EKD MV LV ERF ++K
Sbjct: 79 DEIVRAAEIQPGDLVLEIGPGTGALTDSLLCAGAYVIAVEKDPDMVSLVSERFKDNPRVK 138
Query: 191 VL-QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVL 249
VL Q+D +K HIR H+ + E KS S KVV+N+PFNI+TDV+K+LLPMGD+FS VVL
Sbjct: 139 VLFQDDILKWHIRLHLSNWMETIKSPSKLVKVVSNLPFNITTDVVKKLLPMGDLFSNVVL 198
Query: 250 LLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
LLQ+E A R ++ S + EYRPI+IF+ F+S
Sbjct: 199 LLQDEAAARFIDDSPKGDEYRPISIFIRFFS 229
>gi|168011526|ref|XP_001758454.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690489|gb|EDQ76856.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 318
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/207 (49%), Positives = 138/207 (66%), Gaps = 6/207 (2%)
Query: 77 SSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAA 136
SS A + GA S V S++D T+KAL S+ P+K LGQHYMLN ++N + A
Sbjct: 8 SSCAHIPGGAFSYSDV---SREDAARNTLKALKSQNHRPKKWLGQHYMLNDQVNIDMVEA 64
Query: 137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
A +Q GD+VLEIGPGTGSLTN L+ AGA ++A+EKD M L+ ERF Q++++ EDF
Sbjct: 65 AKIQPGDLVLEIGPGTGSLTNALVEAGADIIAVEKDPDMAALITERFGHCGQVEIINEDF 124
Query: 197 VKCHIRSHMLSLFERRKSSS---GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQE 253
VK +M +R S AKV+AN+PFNI+T V+KQLLP+G FS ++LLLQ+
Sbjct: 125 VKWPAALYMQQALRKRFGESEPPPRAKVIANLPFNITTQVVKQLLPLGCTFSHIILLLQD 184
Query: 254 ETALRLVEPSLRTSEYRPINIFVNFYS 280
E A+RLV+ S EYRPI+I +NF+S
Sbjct: 185 EAAIRLVDASPDAEEYRPISILINFFS 211
>gi|326513775|dbj|BAJ87906.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 227
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 98/158 (62%), Positives = 129/158 (81%), Gaps = 1/158 (0%)
Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF 183
MLN+ +N++L AAA V+ GD+VLEIGPGTGSLT LL AGATV+A+EKD+HM LVR+RF
Sbjct: 1 MLNARVNEELVAAAGVEVGDVVLEIGPGTGSLTAALLAAGATVVAVEKDKHMATLVRDRF 60
Query: 184 ASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGD 242
S +QLKV++ED K H+ SH L + E+ + + +AKVVAN+PFN+ST+V+KQ+LPMGD
Sbjct: 61 GSTEQLKVIEEDITKFHVHSHFLPILDEKSRGTKKYAKVVANLPFNVSTEVVKQILPMGD 120
Query: 243 IFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+FS +VL+LQ+E ALRL S++T EYRPIN+FVNFYS
Sbjct: 121 VFSVMVLMLQDEAALRLANASIQTPEYRPINVFVNFYS 158
>gi|449531773|ref|XP_004172860.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like,
partial [Cucumis sativus]
Length = 150
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/92 (79%), Positives = 85/92 (92%)
Query: 99 DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
DDYH+TI+ALNSKGR PRKSLGQHYMLNS IN+QLAAAA V+EGD+VLEIGPGTGSLTNV
Sbjct: 59 DDYHSTIRALNSKGRVPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTNV 118
Query: 159 LLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
L+N+GATVLA+EKD +M GLV ERFA+ ++LK
Sbjct: 119 LINSGATVLAVEKDSYMAGLVDERFANTNRLK 150
>gi|449533844|ref|XP_004173881.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like,
partial [Cucumis sativus]
Length = 139
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/94 (76%), Positives = 80/94 (85%), Gaps = 3/94 (3%)
Query: 191 VLQEDFVKCHIRSHMLSLF---ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEV 247
VL EDFVKC++ SHM+SL E ++ S AKVV+NIPFNISTD+IKQLLPMGDIFSEV
Sbjct: 1 VLNEDFVKCNVSSHMMSLLKSIELSEARSQPAKVVSNIPFNISTDIIKQLLPMGDIFSEV 60
Query: 248 VLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG 281
VLLLQEE ALRLVE SLRTSEYRPIN+FVNFYS
Sbjct: 61 VLLLQEEAALRLVETSLRTSEYRPINVFVNFYSD 94
>gi|255088241|ref|XP_002506043.1| predicted protein [Micromonas sp. RCC299]
gi|226521314|gb|ACO67301.1| predicted protein [Micromonas sp. RCC299]
Length = 266
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 110/168 (65%), Gaps = 7/168 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
R+ LGQH++++ + AAAV +GD +LEIGPGTG+LT L+ AGA + A+EKD+++
Sbjct: 1 RRWLGQHFLIDHSVILDALDAAAVTDGDRILEIGPGTGNLTVELVKAGAVITAVEKDRNL 60
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG---FAKVVANIPFNISTD 232
+R ++ D + V + DF+K ++ FE R G AKVVANIP+NI+TD
Sbjct: 61 ADKLRTQYDGDDAVTVHEADFLKWNVARE----FEHRGVYPGDAHRAKVVANIPYNITTD 116
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
++K LLPMGD F ++V + QEE A RL+ S+YRP+++ V++YS
Sbjct: 117 ILKTLLPMGDTFGDMVFMFQEEVARRLIRQDSGASDYRPMSVRVHYYS 164
>gi|308807535|ref|XP_003081078.1| putative dimethyladenosine transferase (ISS) [Ostreococcus tauri]
gi|116059540|emb|CAL55247.1| putative dimethyladenosine transferase (ISS) [Ostreococcus tauri]
Length = 363
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 109/167 (65%), Gaps = 5/167 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
R+ LGQH+++++ + AA + EGD VLEIGPGTG+LT LL+ GA VLA+EKD+++
Sbjct: 85 RRWLGQHFLIDASVVTDAVEAARLNEGDRVLEIGPGTGNLTCELLSRGANVLAVEKDRNL 144
Query: 176 VGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+R+ + L++++ DF+K + + F R AKVVANIP+NI+TDV
Sbjct: 145 AEKLRKGLCVEHGEALRLVEGDFLKW---DGLAAAFARTSPEQPRAKVVANIPYNITTDV 201
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+K LLPMGD+F +++ + QEE A RLV +YR +++ V++YS
Sbjct: 202 LKVLLPMGDVFEDMIFMFQEEVAQRLVRDDAGGGDYRAMSVRVHYYS 248
>gi|145350183|ref|XP_001419496.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579728|gb|ABO97789.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 268
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 108/167 (64%), Gaps = 5/167 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
R+ LGQH+++++ + AA + G+ VLEIGPGTG+LTN +L GA VLA+EKD+++
Sbjct: 2 RRWLGQHFLVDASVVTDAVEAARLGAGERVLEIGPGTGNLTNEMLKRGARVLAVEKDRNL 61
Query: 176 VGLVRERFA--SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+RE D ++++ DF+K + + FER + AKVVANIP+NI+TDV
Sbjct: 62 AEKLREGLCVEYKDAFELVEGDFLKW---DGLATAFERATPETPRAKVVANIPYNITTDV 118
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+K LLPMGD F +++ + QEE A RLV +YR +++ V++YS
Sbjct: 119 LKVLLPMGDTFEDMIFMFQEEVAQRLVRDDAGGGDYRAMSVRVHYYS 165
>gi|303275612|ref|XP_003057100.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461452|gb|EEH58745.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 274
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 105/172 (61%), Gaps = 7/172 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
R+ LGQH++++ + AA V+ GD +LEIGPGTG+LT LL+AGA V A+EKD+++
Sbjct: 1 RRWLGQHFLVDRSVILDALDAADVRAGDSILEIGPGTGNLTAELLSAGAVVTAVEKDRNL 60
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHM-------LSLFERRKSSSGFAKVVANIPFN 228
+ E F + L V + DF+K ++ + + AKVVANIP+N
Sbjct: 61 ADKLAETFRGNENLTVHEADFLKWNVAKAFPEPTDAAAADAALGDGAPRRAKVVANIPYN 120
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+TD++K LLPMGD F +V + QEE A RL+ S+YRP+++ V +YS
Sbjct: 121 ITTDILKVLLPMGDTFENMVFMFQEEVARRLIRDDAGGSDYRPMSVRVRYYS 172
>gi|297720837|ref|NP_001172781.1| Os02g0122900 [Oryza sativa Japonica Group]
gi|255670560|dbj|BAH91510.1| Os02g0122900, partial [Oryza sativa Japonica Group]
Length = 131
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%), Gaps = 2/85 (2%)
Query: 89 ACIVCARSQ-DDDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVL 146
A +V A S D YH+TI++LNS+GR PRKSLGQ+YMLNS++N++L AAA V+EGD+VL
Sbjct: 35 ATVVSAASGVTDGYHSTIRSLNSRGRHVPRKSLGQNYMLNSKVNEELVAAAGVEEGDVVL 94
Query: 147 EIGPGTGSLTNVLLNAGATVLAIEK 171
EIGPGTGSLT LL+AGATV A+EK
Sbjct: 95 EIGPGTGSLTAALLDAGATVFAVEK 119
>gi|384246022|gb|EIE19514.1| hypothetical protein COCSUDRAFT_83565, partial [Coccomyxa
subellipsoidea C-169]
Length = 269
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 106/173 (61%), Gaps = 10/173 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
+SLGQ+++ + E+ ++ A+A ++ GD +LEIGPG GSLT+ LL+ GA+VLAIEKD +
Sbjct: 1 RSLGQNFVTSEEVLQRIIASAKIRRGDKILEIGPGLGSLTDCLLDCGASVLAIEKDDVLY 60
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF--------AKVVANIPFN 228
G ++++FA +E V I S +L L R+ F +VVANIP+N
Sbjct: 61 GHLQQKFAKAHPQPHTKEPAVSL-IHSDVLLLKNIRQILDDFKGDSEQPSVRVVANIPYN 119
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEY-RPINIFVNFYS 280
I++DV+K +LP+ S V LLL++ A RL E +Y R I++ +NFY+
Sbjct: 120 ITSDVLKMMLPLKHQLSHVHLLLEDGAARRLTEARPGDKDYSRAISVLINFYA 172
>gi|412990834|emb|CCO18206.1| dimethyladenosine transferase [Bathycoccus prasinos]
Length = 406
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 97/148 (65%), Gaps = 7/148 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
R+ LGQH++++ + +A V + D++LEIGPGTG+LT LL G V+A+EKD+++
Sbjct: 97 RRWLGQHFLIDHSVLIDAVRSADVTKEDVILEIGPGTGNLTAELLRTGCKVIAVEKDRNL 156
Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCH-IRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
+RE D+L++++EDF+K + + + L + AKVVANIP+NI+T
Sbjct: 157 AKTLRETLGKEFGEDELEIIEEDFMKWKDLDTKFVGLID---GGEKRAKVVANIPYNITT 213
Query: 232 DVIKQLLPMGDIFSEVVLLLQEETALRL 259
D++K+LLPMGD F ++V + QEE A RL
Sbjct: 214 DILKRLLPMGDTFEDLVFMFQEEVARRL 241
>gi|161611309|ref|YP_007394.2| dimethyladenosine transferase [Candidatus Protochlamydia
amoebophila UWE25]
gi|62900537|sp|Q6ME80.2|RSMA_PARUW RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
Length = 284
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 104/177 (58%), Gaps = 13/177 (7%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G FP+K L Q+++++ I ++ A+ VQ G++VLEIGPG GSLT +L A V+
Sbjct: 13 LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVV 72
Query: 168 AIEKDQHMVGLVRE--RFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
A+EKD L RE RF + QL++ ED + + + S R AKV+AN
Sbjct: 73 AVEKD---FVLARELKRFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
+P++++T ++ +++ +FS + +++QEE A R+ P S+Y IF+NFYS
Sbjct: 126 LPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPG--QSDYSSFTIFLNFYS 180
>gi|282891871|ref|ZP_06300350.1| hypothetical protein pah_c200o016 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338176218|ref|YP_004653028.1| ribosomal RNA smaLL subunit methyltransferase A [Parachlamydia
acanthamoebae UV-7]
gi|281498131|gb|EFB40471.1| hypothetical protein pah_c200o016 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480576|emb|CCB87174.1| ribosomal RNA smaLL subunit methyltransferase A [Parachlamydia
acanthamoebae UV-7]
Length = 282
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 105/175 (60%), Gaps = 9/175 (5%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LNS G P+K L Q+++++ I ++AA AA D++LEIGPG GSLT LL GA V+
Sbjct: 13 LNSLGIRPKKGLSQNFLIDGNIIRKIAATAAASSDDVILEIGPGPGSLTECLLETGAQVI 72
Query: 168 AIEKDQHMV-GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
A+EKD + L+R + L+V ED +K I S+F++ + AKV+AN+P
Sbjct: 73 AVEKDNQLAEALIRLQ-TPAQTLQVHCEDILKFPIE----SVFKQELKAGKKAKVIANLP 127
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
+++++ ++ +L P+ FS + +++QEE A R P R E+ +F+NF+S
Sbjct: 128 YHLTSSILAELAPLHAYFSTITVMVQEEVARRFTAMPGSR--EFSAFTLFLNFFS 180
>gi|222056012|ref|YP_002538374.1| dimethyladenosine transferase [Geobacter daltonii FRC-32]
gi|221565301|gb|ACM21273.1| dimethyladenosine transferase [Geobacter daltonii FRC-32]
Length = 275
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 100/164 (60%), Gaps = 7/164 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS+GQ+++++ + ++ A ++ D VLEIGPG G+LT++L+ VLA+E D+ +
Sbjct: 7 KKSMGQNFLVDGNVLSRIVEAVVLEPSDRVLEIGPGRGALTSLLVKRAEQVLAVELDRQL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V L+ + F+ D ++ +Q D +K + + S + +G KV AN+P+NIS+ VI
Sbjct: 67 VPLLEKEFSGADNVEFIQGDILKIELPEVLGSRW------NGRWKVAANLPYNISSQVIF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
+ L +FS ++L+LQ+E RL+ S T EY +++F N +
Sbjct: 121 KFLDNVSLFSSLILMLQKEVGDRLIA-SPGTKEYGILSVFCNLH 163
>gi|427723175|ref|YP_007070452.1| dimethyladenosine transferase [Leptolyngbya sp. PCC 7376]
gi|427354895|gb|AFY37618.1| dimethyladenosine transferase [Leptolyngbya sp. PCC 7376]
Length = 272
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 91/150 (60%), Gaps = 9/150 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + I DQ+ AAA +Q+GD +LEIGPG G+LT LL +L++E D+ +
Sbjct: 4 RKQFGQHWLTDDSILDQIVAAADLQQGDRLLEIGPGKGALTRRLLPNAEALLSVEIDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ + + D +L+ D++K +I L+ F + ++ KVVANIP+NI+ +I+
Sbjct: 64 CKYMVQNYGDRDNFLLLEADYLKSNI-DEFLNDFPKFQNPR---KVVANIPYNITGPIIE 119
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLV 260
+LL P + F +VLL+Q+E RL+
Sbjct: 120 KLLGRIANPNPNPFESIVLLIQKEVGDRLI 149
>gi|338734041|ref|YP_004672514.1| ribosomal RNA small subunit methyltransferase A [Simkania
negevensis Z]
gi|336483424|emb|CCB90023.1| ribosomal RNA small subunit methyltransferase A [Simkania
negevensis Z]
Length = 270
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 102/181 (56%), Gaps = 25/181 (13%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
K L P+KSL Q+++++ I ++ ++ V +GD VLE+GPG G LT LL GA
Sbjct: 11 KLLEDLKTHPKKSLSQNFLIDGNIVRKIIESSRVTDGDHVLEVGPGPGVLTEALLGKGAY 70
Query: 166 VLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
V AIEKD +RFA+ +L ++ +DF+K +LS+ + +
Sbjct: 71 VTAIEKD--------DRFATALEDWNHPKLTIVHDDFLKV----DLLSVLKEK------T 112
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVANIP++I+ ++++LLPMG + + L++Q+E A RLV T+ Y +F +Y
Sbjct: 113 KVVANIPYSITGILLQKLLPMGKQIASLTLMVQKEVAERLVAKK-GTNSYSSFTLFAFYY 171
Query: 280 S 280
S
Sbjct: 172 S 172
>gi|297621735|ref|YP_003709872.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044]
gi|297377036|gb|ADI38866.1| dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044]
gi|337292724|emb|CCB90731.1| Ribosomal RNA small subunit methyltransferase A [Waddlia
chondrophila 2032/99]
Length = 283
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 97/167 (58%), Gaps = 16/167 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSL Q+++++ I D++ + A + D VLEIGPG G+LT+ L GA VLA+EKD+
Sbjct: 29 PKKSLSQNFLIDGNIIDKIISLAEINAQDQVLEIGPGPGALTDALHQHGARVLAVEKDRI 88
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ER I +V+ ED +K + + S A V+AN+P+NI++ ++
Sbjct: 89 LAKALQERGGDI---RVICEDVLKVDLEKEL----------SERATVIANLPYNITSPIL 135
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LLP +F +V+++Q E A RL P +T Y + +F N +S
Sbjct: 136 TSLLPKTHVFKRIVVMVQLEVAERLTASPGNKT--YGSLTVFSNLFS 180
>gi|302830902|ref|XP_002947017.1| hypothetical protein VOLCADRAFT_103245 [Volvox carteri f.
nagariensis]
gi|300268061|gb|EFJ52243.1| hypothetical protein VOLCADRAFT_103245 [Volvox carteri f.
nagariensis]
Length = 463
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 38/202 (18%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + + + AAA V D+VLE+GPGTG+LT LL +GA V A+EKD +
Sbjct: 107 KKSLGQNFLTDDAVLQDIVAAAGVGPQDLVLEVGPGTGNLTKHLLASGAGVTAVEKDDTL 166
Query: 176 VGLVRERFASIDQLKVLQEDFVKCH----IRSHMLSLFER-------------------- 211
G +++ + + +L ++ D +K IR ML +
Sbjct: 167 YGRLQKEYGDVPRLTLIHGDALKVGLEDIIRGMMLQQDRQDPAASSESVSSAESALASTS 226
Query: 212 ---------RKSSSGFA-----KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETAL 257
+ SS A KVVAN+P+NI+ D++ LLP+GD S++ +++Q E A+
Sbjct: 227 TSGASSRGYKPGSSAAAGGRKVKVVANLPYNITKDLLTLLLPLGDWISDLHIMIQHEAAV 286
Query: 258 RLVEPSLRTSEYRPINIFVNFY 279
RL E + E+R NI FY
Sbjct: 287 RLTEHTPGGPEWRAANIRTLFY 308
>gi|210623277|ref|ZP_03293694.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275]
gi|210153678|gb|EEA84684.1| hypothetical protein CLOHIR_01644 [Clostridium hiranonis DSM 13275]
Length = 286
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 105/180 (58%), Gaps = 8/180 (4%)
Query: 101 YHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
+ AT ++ G KSLGQ+++++ + D++ A V+EGD V+E+GPG G+LT +
Sbjct: 7 HRATKDIVDKHGFKFSKSLGQNFLIDDNVIDKIIDGARVKEGDKVIEVGPGIGTLTREMA 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+A+E D++++ +++E A D +V+ ED +K I + K S G K
Sbjct: 67 KRAEKVVAVEIDKNLIPILKETLADFDNTEVVNEDILKVDINKLV-----DEKLSGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
++AN+P+ I+T ++ + L +++V+++Q+E A R+ PS T +Y +++ V +Y
Sbjct: 122 LIANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAVPS--TKDYGALSVAVQYY 179
>gi|428311804|ref|YP_007122781.1| dimethyladenosine transferase [Microcoleus sp. PCC 7113]
gi|428253416|gb|AFZ19375.1| dimethyladenosine transferase [Microcoleus sp. PCC 7113]
Length = 297
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 91/156 (58%), Gaps = 10/156 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK QH++ + +Q+ AAA +Q+ + +LEIGPGTG LT LL +V+A+E D+ +
Sbjct: 23 RKQFAQHWLRSEAALNQIVAAAQLQKSERILEIGPGTGILTRRLLPQAESVVAVEIDRDL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ ++ S D +LQ DF+ I + + S + KVVANIP+NI+ +++
Sbjct: 83 CKLLVQKLRSFDNFLLLQGDFLTLDIDAQLASF----PAFQNPNKVVANIPYNITGPILE 138
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL-VEPSLR 265
+LL P D F +VLL+Q+E A RL +PS R
Sbjct: 139 KLLGTISQPAADPFDLIVLLVQKEVAERLYAKPSSR 174
>gi|440680353|ref|YP_007155148.1| dimethyladenosine transferase [Anabaena cylindrica PCC 7122]
gi|428677472|gb|AFZ56238.1| dimethyladenosine transferase [Anabaena cylindrica PCC 7122]
Length = 271
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 10/158 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D + AA +EGD +LEIGPGTG LT LL +++A+E D+
Sbjct: 4 PRKQFAQHWLKSEKALDAIVKAAQCREGDRILEIGPGTGILTRRLLPLAKSLVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + S +L+ +K + KVVANIP+NI+ +I
Sbjct: 64 LCKLLVKQLGQKENFLLLQGDFLTLDVPSQLLAFNNFQKQN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRT 266
++LL P + + +VLL+Q+E A RL +P RT
Sbjct: 120 EKLLGTITQPNPEPYDSIVLLVQKEVAERLYAKPGSRT 157
>gi|304438967|ref|ZP_07398890.1| dimethyladenosine transferase [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304372633|gb|EFM26216.1| dimethyladenosine transferase [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 284
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 103/167 (61%), Gaps = 15/167 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I ++A A V+EG VLEIGPG G+LT LL GA VLA+E D+++V
Sbjct: 23 KSLGQNFLIDGNIVRRIADGAGVEEGSNVLEIGPGVGTLTEELLLRGANVLAVEIDKNLV 82
Query: 177 GLVRERFASIDQLKVLQEDFVKC---HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ ++ + D++K++ +DF++ I+S++ G KVVAN+P+ ++T +
Sbjct: 83 D-IHKKTLNYDRVKIIYDDFLRLDTEEIKSYL----------KGPIKVVANLPYYVTTPI 131
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I ++L + +++Q+E A R + T +Y +++F+N+Y+
Sbjct: 132 ITKILESDLEVESITVMVQKEVANRFAAEA-GTKDYGSLSVFINYYA 177
>gi|347755376|ref|YP_004862940.1| dimethyladenosine transferase [Candidatus Chloracidobacterium
thermophilum B]
gi|347587894|gb|AEP12424.1| dimethyladenosine transferase [Candidatus Chloracidobacterium
thermophilum B]
Length = 291
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 9/149 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + + ++ AAA V D+V+EIGPG G+LT VLL A V+A E D+
Sbjct: 13 PRKRFGQHFLRDRHLLARIVAAAEVGPDDLVVEIGPGRGALTEVLLERAAGVIAFELDRD 72
Query: 175 MVGLVRERFAS----IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
+ + RFA + VL+ D C + +S KVVAN+P+N+S
Sbjct: 73 LAAWLSVRFADRRWRLHVGDVLEADLAACVTEAGAAWGL-----TSAPVKVVANVPYNLS 127
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRL 259
T ++++LL +++++VL+LQ E RL
Sbjct: 128 TPIVEKLLAARHLWTDIVLMLQREVVWRL 156
>gi|339625306|ref|ZP_08661095.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Fructobacillus fructosus KCTC 3544]
Length = 295
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 100/174 (57%), Gaps = 7/174 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + I + AA + + D+V+EIGPG G LT L A VL
Sbjct: 17 LNQYGLRAKKKFGQNFLTDGNILSGIVQAADLTKEDLVVEIGPGIGGLTEYLARAAKKVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ E A D ++++++D ++ +++ + F + + KVVAN+P+
Sbjct: 77 AFEIDPDMVKILAETLAPYDNVQIVEQDVLEADLKTVLAESFGEKSA----VKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
I+T ++ LL G + ++V+++Q+E A RL +P T EY + + +++Y+
Sbjct: 133 YITTPILLALLQAGIHWEKLVVMMQKEVADRLSAKPG--TKEYGVLTVMLDYYA 184
>gi|417849029|ref|ZP_12494958.1| dimethyladenosine transferase [Streptococcus mitis SK1080]
gi|339457322|gb|EGP69897.1| dimethyladenosine transferase [Streptococcus mitis SK1080]
Length = 290
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AESAAEVMAFEIDHRLVPILADTLCDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|406586585|ref|ZP_11061513.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus sp. GMD1S]
gi|404473936|gb|EKA18259.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus sp. GMD1S]
Length = 290
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ S K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQSF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|406579179|ref|ZP_11054426.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein,
partial [Streptococcus sp. GMD6S]
gi|404452592|gb|EJZ99767.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein,
partial [Streptococcus sp. GMD6S]
Length = 262
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ S K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQSF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|260888713|ref|ZP_05899976.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
gi|330839885|ref|YP_004414465.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
gi|260861582|gb|EEX76082.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
gi|329747649|gb|AEC01006.1| dimethyladenosine transferase [Selenomonas sputigena ATCC 35185]
Length = 288
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 87/144 (60%), Gaps = 9/144 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AAA ++EGD VLEIGPG G+LT LL AGA V A+E D+ +
Sbjct: 25 KRLGQNFLVDGSVVKDIVAAAEIEEGDRVLEIGPGIGTLTQGLLEAGAHVTAVELDKKLP 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E A+ D L+++ D +K IR+ M + F KV AN+P+ I+T ++
Sbjct: 85 AVLAETLAAYDHLRIVPGDILKTDIRALM--------ENQPF-KVAANLPYYITTPILLA 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV 260
LL + +V ++Q+E A R++
Sbjct: 136 LLEQHLPITHIVTMVQKEVAERMI 159
>gi|419777823|ref|ZP_14303725.1| dimethyladenosine transferase [Streptococcus oralis SK10]
gi|383187576|gb|EIC80020.1| dimethyladenosine transferase [Streptococcus oralis SK10]
Length = 290
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ S K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQSF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|220933005|ref|YP_002509913.1| dimethyladenosine transferase [Halothermothrix orenii H 168]
gi|254807869|sp|B8D0I2.1|RSMA_HALOH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|219994315|gb|ACL70918.1| dimethyladenosine transferase [Halothermothrix orenii H 168]
Length = 301
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 5/163 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ I D++ A + DIV+EIGPG GSLT ++ V A EKD+ +V
Sbjct: 24 KGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLV 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++RE F + L+V+ +D ++ + F+ R S KV+AN+P+ I+T VI
Sbjct: 84 KVLRELFNGYNHLEVIGQDVLEVDWK----HFFDSRGISDRSVKVLANLPYYITTPVIMG 139
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
LL FS +VL++Q+E A R+ + + +Y +++ V +Y
Sbjct: 140 LLESNITFSLMVLMVQKEVADRMA-AAPGSKDYGALSVAVQYY 181
>gi|336392333|ref|ZP_08573732.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus coryniformis subsp. torquens KCTC 3535]
Length = 296
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I Q+A+AA + D VLEIGPG GSLT L VLA+E DQ +
Sbjct: 26 KKSLGQNFLTEPTILRQIASAAELTTADDVLEIGPGIGSLTEQLAQNAHQVLALEIDQRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D + VL +D +K + + + F+ + KVVAN+P+ I+T ++
Sbjct: 86 LPILADTLAPYDNVTVLNQDVLKSDLATLIRDHFDGQHK----VKVVANLPYYITTPILL 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
+LL G F ++V+++Q+E A RL
Sbjct: 142 RLLESGVTFDQIVVMMQKEVAERL 165
>gi|78499686|gb|ABB45840.1| hypothetical protein [Eutrema halophilum]
Length = 310
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 99/187 (52%), Gaps = 25/187 (13%)
Query: 81 GVQKGAASACIVCARSQDDDYHATIKALNSK----GRFPRKSLGQHYMLNSEINDQLAAA 136
G+ K A+S + R +YH+ + K G F KS GQH + N+ I D +
Sbjct: 13 GIVKSASSYYLASRR----NYHSWSGQVEKKKEQDGLFLHKSKGQHLLTNNRILDAIVRI 68
Query: 137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQ 193
+ V+ D VLEIGPGTG+LT LL A V+A+E D+ MV ++ +R A D+L ++Q
Sbjct: 69 SDVRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVEIDKRMVEILGKRVADHGLEDKLTIIQ 128
Query: 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQE 253
+D +K F VVANIP+NIS+ ++ +L+ + F LLLQ+
Sbjct: 129 KDVLKTDF--------------PQFDLVVANIPYNISSPLVAKLVYGSNAFRSATLLLQK 174
Query: 254 ETALRLV 260
E + RL+
Sbjct: 175 EFSRRLL 181
>gi|419816515|ref|ZP_14340737.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein,
partial [Streptococcus sp. GMD2S]
gi|404460068|gb|EKA06358.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein,
partial [Streptococcus sp. GMD2S]
Length = 195
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ S K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQSF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|333396677|ref|ZP_08478492.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus coryniformis subsp. coryniformis KCTC
3167]
Length = 296
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I Q+A+AA + D VLEIGPG GSLT L VLA+E DQ +
Sbjct: 26 KKSLGQNFLTEPTILRQIASAAELTTADDVLEIGPGIGSLTEQLAQNAHQVLALEIDQRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D + VL +D +K + + + F+ + KVVAN+P+ I+T ++
Sbjct: 86 LPILADTLAPYDNVTVLNQDVLKSDLATLIREHFDGQHK----VKVVANLPYYITTPILL 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
+LL G F ++V+++Q+E A RL
Sbjct: 142 RLLESGVAFDQIVVMMQKEVAERL 165
>gi|428304802|ref|YP_007141627.1| dimethyladenosine transferase [Crinalium epipsammum PCC 9333]
gi|428246337|gb|AFZ12117.1| dimethyladenosine transferase [Crinalium epipsammum PCC 9333]
Length = 291
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 86/150 (57%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + + D + AAA + EGD VLEIGPG G LT LL + +A+E D+
Sbjct: 5 PRKQFGQHWLRSEKALDNIIAAAELSEGDRVLEIGPGQGVLTRKLLPKVQSAVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++ D+ +LQ D + + +H+ S + KVVANIP+NI+ ++
Sbjct: 65 LCKVLAQKIGYFDKFLLLQGDILTLDLPAHLASF----PNFQNLNKVVANIPYNITGPIL 120
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P + +VLL+Q+E A RL
Sbjct: 121 EKLLGRIATPASAPYDLIVLLVQKEVAERL 150
>gi|420145311|ref|ZP_14652781.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
coryniformis subsp. coryniformis CECT 5711]
gi|398403087|gb|EJN56362.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
coryniformis subsp. coryniformis CECT 5711]
Length = 296
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I Q+A+AA + D VLEIGPG GSLT L VLA+E DQ +
Sbjct: 26 KKSLGQNFLTEPTILRQIASAAELTTADDVLEIGPGIGSLTEQLAQNAHQVLALEIDQRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D + VL +D +K + + + F+ + KVVAN+P+ I+T ++
Sbjct: 86 LPILADTLAPYDNVTVLNQDVLKSDLATLIRDHFDGQHK----VKVVANLPYYITTPILL 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
+LL G F ++V+++Q+E A RL
Sbjct: 142 RLLESGVAFDQIVVMMQKEVAERL 165
>gi|385261471|ref|ZP_10039593.1| dimethyladenosine transferase [Streptococcus sp. SK643]
gi|385192999|gb|EIF40387.1| dimethyladenosine transferase [Streptococcus sp. SK643]
Length = 290
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AECAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIKNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|335029369|ref|ZP_08522876.1| dimethyladenosine transferase [Streptococcus infantis SK1076]
gi|334268666|gb|EGL87098.1| dimethyladenosine transferase [Streptococcus infantis SK1076]
Length = 290
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ +T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAKPNTKT--YGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|402834660|ref|ZP_10883258.1| dimethyladenosine transferase [Selenomonas sp. CM52]
gi|402277366|gb|EJU26444.1| dimethyladenosine transferase [Selenomonas sp. CM52]
Length = 288
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 87/144 (60%), Gaps = 9/144 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AAA +++GD VLEIGPG G+LT LL AGA V A+E D+ +
Sbjct: 25 KRLGQNFLVDGSVVKDIVAAAEIEDGDRVLEIGPGIGTLTQGLLEAGAHVTAVELDKKLP 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E A+ D L+++ D +K IR+ M + F KV AN+P+ I+T ++
Sbjct: 85 AVLAETLAAYDHLRIVPGDILKTDIRALM--------ENQPF-KVAANLPYYITTPILLA 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV 260
LL + +V ++Q+E A R++
Sbjct: 136 LLEQNLPITHIVTMVQKEVAERMI 159
>gi|307707668|ref|ZP_07644148.1| dimethyladenosine transferase [Streptococcus mitis NCTC 12261]
gi|307616280|gb|EFN95473.1| dimethyladenosine transferase [Streptococcus mitis NCTC 12261]
Length = 290
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K ++ H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVNLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|168484284|ref|ZP_02709236.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1873-00]
gi|417697154|ref|ZP_12346331.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47368]
gi|418092588|ref|ZP_12729727.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44452]
gi|418108527|ref|ZP_12745562.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41410]
gi|418110959|ref|ZP_12747977.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49447]
gi|418176775|ref|ZP_12813365.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41437]
gi|418219702|ref|ZP_12846366.1| dimethyladenosine transferase [Streptococcus pneumoniae NP127]
gi|418222017|ref|ZP_12848669.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47751]
gi|418239499|ref|ZP_12866049.1| dimethyladenosine transferase [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419423771|ref|ZP_13963983.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43264]
gi|419460813|ref|ZP_14000739.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02270]
gi|419463113|ref|ZP_14003015.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02714]
gi|419489744|ref|ZP_14029492.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44386]
gi|172042507|gb|EDT50553.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1873-00]
gi|332199410|gb|EGJ13487.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47368]
gi|353762388|gb|EHD42948.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44452]
gi|353777054|gb|EHD57528.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41410]
gi|353781131|gb|EHD61580.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49447]
gi|353840401|gb|EHE20467.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41437]
gi|353872794|gb|EHE52657.1| dimethyladenosine transferase [Streptococcus pneumoniae NP127]
gi|353874065|gb|EHE53923.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47751]
gi|353891883|gb|EHE71634.1| dimethyladenosine transferase [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379529572|gb|EHY94816.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02270]
gi|379529646|gb|EHY94889.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02714]
gi|379585215|gb|EHZ50073.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43264]
gi|379585843|gb|EHZ50698.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44386]
Length = 290
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLSI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|417687466|ref|ZP_12336736.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41301]
gi|418160723|ref|ZP_12797421.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17227]
gi|419521935|ref|ZP_14061529.1| dimethyladenosine transferase [Streptococcus pneumoniae GA05245]
gi|332072170|gb|EGI82656.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41301]
gi|353820906|gb|EHE01088.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17227]
gi|379537415|gb|EHZ02599.1| dimethyladenosine transferase [Streptococcus pneumoniae GA05245]
Length = 290
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLSI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|322377595|ref|ZP_08052085.1| dimethyladenosine transferase [Streptococcus sp. M334]
gi|321281360|gb|EFX58370.1| dimethyladenosine transferase [Streptococcus sp. M334]
Length = 290
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPALPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|149012426|ref|ZP_01833457.1| dimethyladenosine transferase [Streptococcus pneumoniae SP19-BS75]
gi|418190218|ref|ZP_12826729.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47373]
gi|147763482|gb|EDK70418.1| dimethyladenosine transferase [Streptococcus pneumoniae SP19-BS75]
gi|353853048|gb|EHE33032.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47373]
Length = 290
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|419767042|ref|ZP_14293211.1| dimethyladenosine transferase [Streptococcus mitis SK579]
gi|383353509|gb|EID31120.1| dimethyladenosine transferase [Streptococcus mitis SK579]
Length = 290
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVINEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|42573814|ref|NP_975003.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
thaliana]
gi|10177517|dbj|BAB10912.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana]
gi|332010821|gb|AED98204.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
thaliana]
Length = 380
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 17/152 (11%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
G F KS GQH + N+ I D + ++ ++ D VLEIGPGTG+LT LL A V+A+E
Sbjct: 60 GLFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVEL 119
Query: 172 DQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
D+ MV ++R+R + D+L ++Q+D +K F VVANIP+N
Sbjct: 120 DKRMVEILRKRVSDHGFADKLTIIQKDVLKTDF--------------PHFDLVVANIPYN 165
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
IS+ ++ +L+ + F LLLQ+E + RL+
Sbjct: 166 ISSPLVAKLVYGSNTFRSATLLLQKEFSRRLL 197
>gi|322387082|ref|ZP_08060693.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779]
gi|419843010|ref|ZP_14366336.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779]
gi|321142069|gb|EFX37563.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779]
gi|385703259|gb|EIG40383.1| dimethyladenosine transferase [Streptococcus infantis ATCC 700779]
Length = 290
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A V + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEVDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAKPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|419782840|ref|ZP_14308637.1| dimethyladenosine transferase [Streptococcus oralis SK610]
gi|383182766|gb|EIC75315.1| dimethyladenosine transferase [Streptococcus oralis SK610]
Length = 290
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAGIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|121534378|ref|ZP_01666202.1| dimethyladenosine transferase [Thermosinus carboxydivorans Nor1]
gi|121307148|gb|EAX48066.1| dimethyladenosine transferase [Thermosinus carboxydivorans Nor1]
Length = 283
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T+ L + G K LGQ+++++ ++ D + AAAAV+ G+ VLEIGPG G+LT L AG
Sbjct: 12 TLHILKTFGIQMSKKLGQNFLVDEQVVDGIVAAAAVKPGEAVLEIGPGIGTLTQGLAEAG 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
A V A+E D+ ++ ++ + A D ++++ D ++ I R + F KV+A
Sbjct: 72 ANVTAVELDRQLLDVLAKTLAGYDNVRIIHGDILRIDI--------SREIRAEKF-KVIA 122
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I +LL +V ++Q+E A R+V + + +Y +++ V FY+
Sbjct: 123 NLPYYITTPIIMRLLEERLPVELMVTMVQKEVAERMVA-APGSKDYGALSVAVQFYT 178
>gi|30698221|ref|NP_201437.2| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
thaliana]
gi|21539437|gb|AAM53271.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana]
gi|31711838|gb|AAP68275.1| At5g66360 [Arabidopsis thaliana]
gi|332010820|gb|AED98203.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis
thaliana]
Length = 352
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 17/152 (11%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
G F KS GQH + N+ I D + ++ ++ D VLEIGPGTG+LT LL A V+A+E
Sbjct: 60 GLFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVEL 119
Query: 172 DQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
D+ MV ++R+R + D+L ++Q+D +K F VVANIP+N
Sbjct: 120 DKRMVEILRKRVSDHGFADKLTIIQKDVLKTDF--------------PHFDLVVANIPYN 165
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
IS+ ++ +L+ + F LLLQ+E + RL+
Sbjct: 166 ISSPLVAKLVYGSNTFRSATLLLQKEFSRRLL 197
>gi|15903841|ref|NP_359391.1| dimethyladenosine transferase [Streptococcus pneumoniae R6]
gi|116515767|ref|YP_817204.1| dimethyladenosine transferase [Streptococcus pneumoniae D39]
gi|168492040|ref|ZP_02716183.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC0288-04]
gi|418077200|ref|ZP_12714431.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47502]
gi|418194530|ref|ZP_12831018.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47439]
gi|419496158|ref|ZP_14035874.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47461]
gi|421237074|ref|ZP_15693668.1| dimethyladenosine transferase [Streptococcus pneumoniae 2071004]
gi|421266960|ref|ZP_15717839.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR27]
gi|421269197|ref|ZP_15720063.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR95]
gi|421303656|ref|ZP_15754319.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17484]
gi|33516933|sp|Q8DND3.1|RSMA_STRR6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|122277950|sp|Q04II4.1|RSMA_STRP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|15459484|gb|AAL00602.1| Dimethyladenosine transferase [Streptococcus pneumoniae R6]
gi|116076343|gb|ABJ54063.1| dimethyladenosine transferase [Streptococcus pneumoniae D39]
gi|183573705|gb|EDT94233.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC0288-04]
gi|353746146|gb|EHD26809.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47502]
gi|353857041|gb|EHE37006.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47439]
gi|379593178|gb|EHZ57992.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47461]
gi|395601035|gb|EJG61188.1| dimethyladenosine transferase [Streptococcus pneumoniae 2071004]
gi|395866056|gb|EJG77189.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR27]
gi|395867062|gb|EJG78187.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR95]
gi|395899571|gb|EJH10511.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17484]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|293364728|ref|ZP_06611445.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
gi|307702974|ref|ZP_07639921.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
gi|291316178|gb|EFE56614.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
gi|307623367|gb|EFO02357.1| dimethyladenosine transferase [Streptococcus oralis ATCC 35037]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 TERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|149007460|ref|ZP_01831103.1| dimethyladenosine transferase [Streptococcus pneumoniae SP18-BS74]
gi|417677689|ref|ZP_12327094.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17545]
gi|418097116|ref|ZP_12734223.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16531]
gi|418113320|ref|ZP_12750318.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41538]
gi|418155945|ref|ZP_12792670.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16242]
gi|418163017|ref|ZP_12799697.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17328]
gi|418226343|ref|ZP_12852969.1| dimethyladenosine transferase [Streptococcus pneumoniae NP112]
gi|419467643|ref|ZP_14007523.1| dimethyladenosine transferase [Streptococcus pneumoniae GA05248]
gi|419513366|ref|ZP_14052998.1| dimethyladenosine transferase [Streptococcus pneumoniae GA05578]
gi|419517572|ref|ZP_14057186.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02506]
gi|419526705|ref|ZP_14066260.1| dimethyladenosine transferase [Streptococcus pneumoniae GA14373]
gi|421284117|ref|ZP_15734901.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04216]
gi|421299451|ref|ZP_15750137.1| dimethyladenosine transferase [Streptococcus pneumoniae GA60080]
gi|147761032|gb|EDK68001.1| dimethyladenosine transferase [Streptococcus pneumoniae SP18-BS74]
gi|332071962|gb|EGI82450.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17545]
gi|353767242|gb|EHD47778.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16531]
gi|353782251|gb|EHD62687.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41538]
gi|353819651|gb|EHD99843.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16242]
gi|353826295|gb|EHE06454.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17328]
gi|353879909|gb|EHE59730.1| dimethyladenosine transferase [Streptococcus pneumoniae NP112]
gi|379542556|gb|EHZ07712.1| dimethyladenosine transferase [Streptococcus pneumoniae GA05248]
gi|379556194|gb|EHZ21250.1| dimethyladenosine transferase [Streptococcus pneumoniae GA14373]
gi|379634531|gb|EHZ99096.1| dimethyladenosine transferase [Streptococcus pneumoniae GA05578]
gi|379637864|gb|EIA02414.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02506]
gi|395879908|gb|EJG90964.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04216]
gi|395899466|gb|EJH10407.1| dimethyladenosine transferase [Streptococcus pneumoniae GA60080]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|414159212|ref|ZP_11415502.1| ribosomal RNA small subunit methyltransferase A [Streptococcus sp.
F0441]
gi|410868209|gb|EKS16177.1| ribosomal RNA small subunit methyltransferase A [Streptococcus sp.
F0441]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|418167628|ref|ZP_12804280.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17971]
gi|353828130|gb|EHE08274.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17971]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|168487122|ref|ZP_02711630.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1087-00]
gi|418185732|ref|ZP_12822270.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47283]
gi|419480797|ref|ZP_14020600.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19101]
gi|419500499|ref|ZP_14040192.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47597]
gi|419511224|ref|ZP_14050864.1| dimethyladenosine transferase [Streptococcus pneumoniae NP141]
gi|419531034|ref|ZP_14070559.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40028]
gi|421213906|ref|ZP_15670859.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070108]
gi|421216044|ref|ZP_15672964.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070109]
gi|183569963|gb|EDT90491.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC1087-00]
gi|353847636|gb|EHE27657.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47283]
gi|379569385|gb|EHZ34356.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19101]
gi|379570829|gb|EHZ35789.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40028]
gi|379598555|gb|EHZ63343.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47597]
gi|379630679|gb|EHZ95261.1| dimethyladenosine transferase [Streptococcus pneumoniae NP141]
gi|395578619|gb|EJG39134.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070108]
gi|395579424|gb|EJG39924.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070109]
gi|429316775|emb|CCP36493.1| dimethyladenosine transferase [Streptococcus pneumoniae SPN034156]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|419441930|ref|ZP_13981965.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13224]
gi|379555426|gb|EHZ20495.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13224]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|417924640|ref|ZP_12568079.1| dimethyladenosine transferase [Streptococcus mitis SK569]
gi|342835859|gb|EGU70089.1| dimethyladenosine transferase [Streptococcus mitis SK569]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|306830179|ref|ZP_07463363.1| dimethyladenosine transferase [Streptococcus mitis ATCC 6249]
gi|304427705|gb|EFM30801.1| dimethyladenosine transferase [Streptococcus mitis ATCC 6249]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|358465602|ref|ZP_09175538.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 058
str. F0407]
gi|357065411|gb|EHI75622.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 058
str. F0407]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|418977283|ref|ZP_13525111.1| dimethyladenosine transferase [Streptococcus mitis SK575]
gi|383350157|gb|EID28052.1| dimethyladenosine transferase [Streptococcus mitis SK575]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|405760142|ref|YP_006700738.1| dimethyladenosine transferase [Streptococcus pneumoniae SPNA45]
gi|404277031|emb|CCM07524.1| dimethyladenosine transferase [Streptococcus pneumoniae SPNA45]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|418966551|ref|ZP_13518282.1| dimethyladenosine transferase [Streptococcus mitis SK616]
gi|383347129|gb|EID25131.1| dimethyladenosine transferase [Streptococcus mitis SK616]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|307705634|ref|ZP_07642485.1| dimethyladenosine transferase [Streptococcus mitis SK597]
gi|307620810|gb|EFN99895.1| dimethyladenosine transferase [Streptococcus mitis SK597]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|417915987|ref|ZP_12559580.1| dimethyladenosine transferase [Streptococcus mitis bv. 2 str. SK95]
gi|342831610|gb|EGU65924.1| dimethyladenosine transferase [Streptococcus mitis bv. 2 str. SK95]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|307709722|ref|ZP_07646173.1| dimethyladenosine transferase [Streptococcus mitis SK564]
gi|307619424|gb|EFN98549.1| dimethyladenosine transferase [Streptococcus mitis SK564]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|225857560|ref|YP_002739071.1| dimethyladenosine transferase [Streptococcus pneumoniae P1031]
gi|387627140|ref|YP_006063316.1| dimethyladenosine transferase [Streptococcus pneumoniae INV104]
gi|410477325|ref|YP_006744084.1| dimethyladenosine transferase [Streptococcus pneumoniae gamPNI0373]
gi|417694844|ref|ZP_12344030.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47901]
gi|444383250|ref|ZP_21181443.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS8106]
gi|444385935|ref|ZP_21184003.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS8203]
gi|444387496|ref|ZP_21185516.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS125219]
gi|444390959|ref|ZP_21188872.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS70012]
gi|444393248|ref|ZP_21190904.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS81218]
gi|444395784|ref|ZP_21193325.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0002]
gi|444398693|ref|ZP_21196173.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0006]
gi|444399506|ref|ZP_21196968.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0007]
gi|444401782|ref|ZP_21198963.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0008]
gi|444404189|ref|ZP_21201149.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0009]
gi|444406703|ref|ZP_21203373.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0010]
gi|444408993|ref|ZP_21205594.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0076]
gi|444412583|ref|ZP_21208904.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0153]
gi|444414939|ref|ZP_21211187.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0199]
gi|444417720|ref|ZP_21213738.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0360]
gi|444420771|ref|ZP_21216539.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0427]
gi|444422151|ref|ZP_21217814.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0446]
gi|254807890|sp|C1CMT3.1|RSMA_STRZP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|225725962|gb|ACO21814.1| dimethyladenosine transferase [Streptococcus pneumoniae P1031]
gi|301794926|emb|CBW37388.1| dimethyladenosine transferase [Streptococcus pneumoniae INV104]
gi|332199997|gb|EGJ14071.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47901]
gi|406370270|gb|AFS43960.1| dimethyladenosine transferase [Streptococcus pneumoniae gamPNI0373]
gi|444248903|gb|ELU55402.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS8203]
gi|444250274|gb|ELU56756.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS8106]
gi|444252709|gb|ELU59170.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS125219]
gi|444255117|gb|ELU61473.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS70012]
gi|444257425|gb|ELU63762.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0002]
gi|444258770|gb|ELU65091.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0006]
gi|444261515|gb|ELU67817.1| dimethyladenosine transferase [Streptococcus pneumoniae PCS81218]
gi|444267657|gb|ELU73552.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0008]
gi|444268565|gb|ELU74411.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0007]
gi|444272050|gb|ELU77788.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0010]
gi|444274545|gb|ELU80192.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0153]
gi|444277262|gb|ELU82776.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0009]
gi|444280442|gb|ELU85809.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0076]
gi|444280864|gb|ELU86211.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0199]
gi|444282961|gb|ELU88182.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0360]
gi|444283937|gb|ELU89108.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0427]
gi|444288530|gb|ELU93423.1| dimethyladenosine transferase [Streptococcus pneumoniae PNI0446]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|417847132|ref|ZP_12493101.1| dimethyladenosine transferase [Streptococcus mitis SK1073]
gi|339457161|gb|EGP69739.1| dimethyladenosine transferase [Streptococcus mitis SK1073]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|322375823|ref|ZP_08050334.1| dimethyladenosine transferase [Streptococcus sp. C300]
gi|321279091|gb|EFX56133.1| dimethyladenosine transferase [Streptococcus sp. C300]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|315611880|ref|ZP_07886799.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 49296]
gi|315316058|gb|EFU64091.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 49296]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|383937790|ref|ZP_09991026.1| dimethyladenosine transferase [Streptococcus pseudopneumoniae
SK674]
gi|383715280|gb|EID71250.1| dimethyladenosine transferase [Streptococcus pseudopneumoniae
SK674]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|307710852|ref|ZP_07647279.1| dimethyladenosine transferase [Streptococcus mitis SK321]
gi|307617297|gb|EFN96470.1| dimethyladenosine transferase [Streptococcus mitis SK321]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|289167168|ref|YP_003445435.1| dimethyladenosine transferase [Streptococcus mitis B6]
gi|342164663|ref|YP_004769302.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus pseudopneumoniae IS7493]
gi|288906733|emb|CBJ21567.1| dimethyladenosine transferase [Streptococcus mitis B6]
gi|341934545|gb|AEL11442.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus pseudopneumoniae IS7493]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|428208445|ref|YP_007092798.1| dimethyladenosine transferase [Chroococcidiopsis thermalis PCC
7203]
gi|428010366|gb|AFY88929.1| dimethyladenosine transferase [Chroococcidiopsis thermalis PCC
7203]
Length = 271
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 90/149 (60%), Gaps = 9/149 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK QH++ + + D++ AA +Q+ D +LEIGPGTG LT LL ++V+A+E D+ +
Sbjct: 5 RKQFAQHWLKSEKALDRIVQAAEIQQSDRILEIGPGTGVLTRRLLPLASSVVAVEIDRDL 64
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ ++ ++ +LQ DF+ + + + L +K + KVVANIP+NI+ +++
Sbjct: 65 CQLLTQKLKKVENFLLLQGDFLNLDLATLLAPLPNFQKPN----KVVANIPYNITGPILE 120
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL 259
+LL P + + +VLL+Q+E A RL
Sbjct: 121 KLLGTIAEPNPEPYESIVLLVQKEVADRL 149
>gi|425440265|ref|ZP_18820571.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9717]
gi|389719341|emb|CCH96809.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9717]
Length = 268
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 95/172 (55%), Gaps = 19/172 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ +AA +Q D VLEIGPGTG LT LL+ V+A+E D++
Sbjct: 5 PRKRFGQHWLKDESILDRIISAADLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRY 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF+ + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDFLTL-----------KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
++LL P + + LL+Q+E A RLV PS T Y +++ + + +
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLVQKEVAERLVAVPS--TKAYSALSVRIQYLA 163
>gi|411117788|ref|ZP_11390169.1| dimethyladenosine transferase [Oscillatoriales cyanobacterium
JSC-12]
gi|410711512|gb|EKQ69018.1| dimethyladenosine transferase [Oscillatoriales cyanobacterium
JSC-12]
Length = 276
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 17/158 (10%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEG--------DIVLEIGPGTGSLTNVLLNAGATV 166
PRK GQH++ + + +Q+ AAA +++G D VLEIGPG G LT +LL+ V
Sbjct: 4 PRKQFGQHWLRSDKALNQIMAAAELKKGNAEGGSRGDRVLEIGPGKGVLTRLLLDHADAV 63
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
+A+E D+ + + ++ ID +LQ DF+ + +L+ F ++ + KVVANIP
Sbjct: 64 VAVEIDRDLCEFLVKKLGVIDHFLLLQGDFLSLDL-VQLLAPFPNFQNPN---KVVANIP 119
Query: 227 FNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
+NI+ ++++LL P F +VLL+Q E ALRL
Sbjct: 120 YNITGPILEKLLGTIAQPNPHPFDSIVLLVQREVALRL 157
>gi|440779977|ref|ZP_20958565.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium pasteurianum DSM 525]
gi|440221653|gb|ELP60857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium pasteurianum DSM 525]
Length = 280
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 96/164 (58%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ++++++E+ + A V + D V+EIGPG G+LT LLNA +V AIE D ++
Sbjct: 19 KSLGQNFLMDNEVLKDIVEGAEVSKEDFVIEIGPGVGTLTRKLLNAAKSVCAIELDSDLL 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + D ++ +D +K + R KS K+VAN+P+ ++T +I +
Sbjct: 79 PILEQELKDYDNFMLVHKDALKVDFN----EITAREKS----VKLVANLPYYVTTPIISK 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL G +F + +++Q+E A R+ +P+ + EY +++ V +Y
Sbjct: 131 LLTGGYVFKSLTIMIQKEVAERIAAKPNCK--EYGALSLLVQYY 172
>gi|331701953|ref|YP_004398912.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
buchneri NRRL B-30929]
gi|329129296|gb|AEB73849.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
buchneri NRRL B-30929]
Length = 296
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ + D + AAA + + D V+EIGPG G LT L A V+A E D ++
Sbjct: 25 KKSLGQNFLVDLGVLDNIVAAAKITKADNVIEIGPGIGGLTEQLAKAANKVVAFEIDANL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++++ +D +K ++ + +F+ K KVVAN+P+ I+T ++
Sbjct: 85 LPVLDETLAPYDNIEIINQDILKANLPKIIDDVFDTEKP----LKVVANLPYYITTPIVM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFV 276
L+ F +V+++Q+E A RL EPS T Y +++ V
Sbjct: 141 DLITGETQFDAIVVMMQKEVAERLNAEPS--TKPYGSLSVIV 180
>gi|270292088|ref|ZP_06198303.1| dimethyladenosine transferase [Streptococcus sp. M143]
gi|270279616|gb|EFA25458.1| dimethyladenosine transferase [Streptococcus sp. M143]
Length = 290
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|331265645|ref|YP_004325275.1| dimethyladenosine transferase [Streptococcus oralis Uo5]
gi|326682317|emb|CBY99934.1| dimethyladenosine transferase [Streptococcus oralis Uo5]
Length = 290
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPGLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|421207467|ref|ZP_15664515.1| dimethyladenosine transferase [Streptococcus pneumoniae 2090008]
gi|421230589|ref|ZP_15687250.1| dimethyladenosine transferase [Streptococcus pneumoniae 2061376]
gi|421234893|ref|ZP_15691509.1| dimethyladenosine transferase [Streptococcus pneumoniae 2061617]
gi|421250241|ref|ZP_15706695.1| dimethyladenosine transferase [Streptococcus pneumoniae 2082239]
gi|421292856|ref|ZP_15743588.1| dimethyladenosine transferase [Streptococcus pneumoniae GA56348]
gi|421312738|ref|ZP_15763337.1| dimethyladenosine transferase [Streptococcus pneumoniae GA58981]
gi|395573039|gb|EJG33631.1| dimethyladenosine transferase [Streptococcus pneumoniae 2090008]
gi|395593093|gb|EJG53346.1| dimethyladenosine transferase [Streptococcus pneumoniae 2061376]
gi|395599510|gb|EJG59676.1| dimethyladenosine transferase [Streptococcus pneumoniae 2061617]
gi|395612805|gb|EJG72841.1| dimethyladenosine transferase [Streptococcus pneumoniae 2082239]
gi|395891417|gb|EJH02415.1| dimethyladenosine transferase [Streptococcus pneumoniae GA56348]
gi|395908063|gb|EJH18947.1| dimethyladenosine transferase [Streptococcus pneumoniae GA58981]
Length = 290
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|421276742|ref|ZP_15727562.1| dimethyladenosine transferase [Streptococcus mitis SPAR10]
gi|395876023|gb|EJG87099.1| dimethyladenosine transferase [Streptococcus mitis SPAR10]
Length = 290
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAKPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|417939642|ref|ZP_12582931.1| dimethyladenosine transferase [Streptococcus oralis SK313]
gi|343389837|gb|EGV02421.1| dimethyladenosine transferase [Streptococcus oralis SK313]
Length = 290
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLHDFDNVTVVNEDILKVDLAQHIKNF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|406027425|ref|YP_006726257.1| dimethyladenosine transferase [Lactobacillus buchneri CD034]
gi|405125914|gb|AFS00675.1| dimethyladenosine transferase [Lactobacillus buchneri CD034]
Length = 296
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 96/162 (59%), Gaps = 7/162 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ + D + AAA + + D V+EIGPG G LT L A V+A E D ++
Sbjct: 25 KKSLGQNFLVDLGVLDNIVAAAKITKADNVIEIGPGIGGLTEQLAKAANKVVAFEIDANL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++++ +D +K ++ + +F+ K KVVAN+P+ I+T ++
Sbjct: 85 LPVLDETLAPYDNIEIINQDILKANLPKIIDDVFDTEKP----LKVVANLPYYITTPIVM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFV 276
L+ F +V+++Q+E A RL EPS T Y +++ V
Sbjct: 141 DLITGETQFDAIVVMMQKEVAERLNAEPS--TKPYGSLSVIV 180
>gi|164688862|ref|ZP_02212890.1| hypothetical protein CLOBAR_02510 [Clostridium bartlettii DSM
16795]
gi|164602066|gb|EDQ95531.1| dimethyladenosine transferase [Clostridium bartlettii DSM 16795]
Length = 288
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 106/180 (58%), Gaps = 8/180 (4%)
Query: 101 YHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
+ AT + +N KSLGQ+++++ + D++ A + E D ++E+GPG G+LT +
Sbjct: 7 HRATKEVVNKHNFKFSKSLGQNFLIDDNVIDRILEGARLSETDRIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D+ ++ +++E A +D ++V+ ED +K ++ + K + G K
Sbjct: 67 KVAENVVAIEIDKTLIPILKETLADLDNVEVVNEDILKVDVQGLI-----NEKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ +PS T +Y +++ V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAKPS--TKDYGALSVAVQYY 179
>gi|322391321|ref|ZP_08064791.1| dimethyladenosine transferase [Streptococcus peroris ATCC 700780]
gi|321145747|gb|EFX41138.1| dimethyladenosine transferase [Streptococcus peroris ATCC 700780]
Length = 290
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAKPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|434393089|ref|YP_007128036.1| dimethyladenosine transferase [Gloeocapsa sp. PCC 7428]
gi|428264930|gb|AFZ30876.1| dimethyladenosine transferase [Gloeocapsa sp. PCC 7428]
Length = 273
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 91/150 (60%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PR+ QH++ N + +Q+ AAA + + D +LEIGPGTG LT LL +V+A+E D
Sbjct: 4 PRRVFAQHWLKNEKALNQIVAAAEITKRDRILEIGPGTGVLTRRLLPLAESVVAVEIDLD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + + +LQ DF++ + S +L+ F +S + KVVANIP+NI+ ++
Sbjct: 64 LCELLAKKLGNTENFLLLQGDFLELDLPS-LLTSFPNFQSPN---KVVANIPYNITGPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P F +VLL+Q+E A RL
Sbjct: 120 EKLLGTIANPNPQPFDLIVLLVQKEVADRL 149
>gi|443668518|ref|ZP_21134201.1| dimethyladenosine transferase [Microcystis aeruginosa DIANCHI905]
gi|159030325|emb|CAO91220.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330807|gb|ELS45499.1| dimethyladenosine transferase [Microcystis aeruginosa DIANCHI905]
Length = 268
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 19/172 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF+ + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDFLTL-----------KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
++LL P + + LLLQ+E A RLV PS T Y +++ + + +
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLLQKEVAERLVAVPS--TKAYSALSVRIQYLA 163
>gi|425456205|ref|ZP_18835916.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9807]
gi|389802755|emb|CCI18231.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9807]
Length = 268
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 93/172 (54%), Gaps = 19/172 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF+ + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDFLTL-----------KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
++LL P + + LLLQ+E A RLV PS T Y +++ + + +
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLLQKEVAERLVAVPS--TKAYSALSVRIQYLA 163
>gi|417935966|ref|ZP_12579283.1| dimethyladenosine transferase [Streptococcus infantis X]
gi|343402875|gb|EGV15380.1| dimethyladenosine transferase [Streptococcus infantis X]
Length = 290
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDNRLVPILADTLRDFDNVTVVNEDILKVDLPQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGISFSEFVVMMQKEVADRISAKPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|56751211|ref|YP_171912.1| dimethyladenosine transferase [Synechococcus elongatus PCC 6301]
gi|81299122|ref|YP_399330.1| dimethyladenosine transferase [Synechococcus elongatus PCC 7942]
gi|62900470|sp|Q5N2S8.1|RSMA_SYNP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|119365855|sp|Q31RH6.1|RSMA_SYNE7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|56686170|dbj|BAD79392.1| dimethyladenosine transferase [Synechococcus elongatus PCC 6301]
gi|81168003|gb|ABB56343.1| dimethyladenosine transferase [Synechococcus elongatus PCC 7942]
Length = 279
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 9/149 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + I D++ AAA ++ D VLEIGPG G+LT LL A ++A+E D+ +
Sbjct: 4 RKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLAAVDGLVAVELDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+G +++RF + +L+ D ++ + + R + +KVVANIP+NI+ +++
Sbjct: 64 IGQLQQRFGQAENFCLLEGDILQLDWTAAIAD----RPRFANPSKVVANIPYNITGPILQ 119
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL 259
LL P F +VLL+Q+E A RL
Sbjct: 120 SLLGTIAQPRRPAFERLVLLVQQEVADRL 148
>gi|428315438|ref|YP_007113320.1| dimethyladenosine transferase [Oscillatoria nigro-viridis PCC 7112]
gi|428239118|gb|AFZ04904.1| dimethyladenosine transferase [Oscillatoria nigro-viridis PCC 7112]
Length = 270
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 92/150 (61%), Gaps = 10/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D++ AA++ +GD VLEIGPGTG LT LL A +V+A+E D+
Sbjct: 6 PRKQFAQHWLKSEKALDKIVKAASL-DGDRVLEIGPGTGILTRRLLPAAESVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + ++ D +LQ DF++ + + L+ F + ++ + KVVANIP+NI+ ++
Sbjct: 65 LCLKLAKQLGKTDNFLLLQGDFLEMDLDAE-LTAFPKFQNPN---KVVANIPYNITGPIL 120
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P F +VLL+Q+E A RL
Sbjct: 121 QKLLGTISVPAAKPFDAIVLLVQKEVAQRL 150
>gi|414078326|ref|YP_006997644.1| dimethyladenosine transferase [Anabaena sp. 90]
gi|413971742|gb|AFW95831.1| dimethyladenosine transferase [Anabaena sp. 90]
Length = 272
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 91/158 (57%), Gaps = 10/158 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + + + AA QE D VLEIGPGTG LT LL ++LA+E D+
Sbjct: 4 PRKQFAQHWLKSDKALNSIVQAANCQETDKVLEIGPGTGILTRRLLPLVKSLLAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + S + + +K + KVVANIP+NI+ +I
Sbjct: 64 LCKLLAKQLGEKENFLLLQGDFLTLDLLSQLTAFPNFQKQN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRT 266
++LL P + F +VLL+Q+E A RL +P RT
Sbjct: 120 EKLLGTISHPNPEPFDSIVLLVQKEVAERLYAKPGSRT 157
>gi|134297956|ref|YP_001111452.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
gi|134050656|gb|ABO48627.1| dimethyladenosine transferase [Desulfotomaculum reducens MI-1]
Length = 293
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 102/182 (56%), Gaps = 18/182 (9%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N+ G RK+LGQ++++++ I D++ AA + GD+V EIGPG G LT L + V+
Sbjct: 14 INTYGFRVRKALGQNFLMDANIIDKIVNAAELTPGDLVFEIGPGLGVLTQRLARSAGKVI 73
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER---RKSSSGFA----- 219
A+E D++++ ++ E D +V+ D +K F+R + GF
Sbjct: 74 AVEIDKNLLPILTETLTDFDNAQVVHADALKVD--------FDRLAAEHTEGGFGKGAKS 125
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
K+VAN+P+ I+T ++ LL G F +V+++Q+E A RL + S +Y ++I V +
Sbjct: 126 FKLVANLPYYITTPILMHLLTSGFNFDCLVVMMQKEVAERL-QASPGGKDYGSLSIAVQY 184
Query: 279 YS 280
Y+
Sbjct: 185 YT 186
>gi|254422682|ref|ZP_05036400.1| dimethyladenosine transferase [Synechococcus sp. PCC 7335]
gi|196190171|gb|EDX85135.1| dimethyladenosine transferase [Synechococcus sp. PCC 7335]
Length = 302
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 98/165 (59%), Gaps = 14/165 (8%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
G+ RK GQH++ + ++ +Q+ A + EGD+VLEIGPG G LT LL+ A VLA+E
Sbjct: 26 GKRARKRFGQHWLCSDQVLNQIVRAGELAEGDLVLEIGPGQGVLTQRLLDTSAKVLAVEI 85
Query: 172 DQHMVGLVRERF---ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
D+ + + ++F + Q ++++ DF++ + +L FE + + KVVANIP+
Sbjct: 86 DRDLCLQLSDQFIADMASGQFRLIESDFLELNFDQALLD-FELDRPN----KVVANIPYY 140
Query: 229 ISTDVIKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTS 267
I+ ++++LL P FS +VLL+Q+E + RL +P R +
Sbjct: 141 ITAPILEKLLGTMRSPNPFPFSNIVLLVQKEISDRLCAQPGTRAN 185
>gi|419780530|ref|ZP_14306377.1| dimethyladenosine transferase [Streptococcus oralis SK100]
gi|383185128|gb|EIC77627.1| dimethyladenosine transferase [Streptococcus oralis SK100]
Length = 290
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A ++A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEIMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLVQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|385260045|ref|ZP_10038199.1| dimethyladenosine transferase [Streptococcus sp. SK140]
gi|385192719|gb|EIF40115.1| dimethyladenosine transferase [Streptococcus sp. SK140]
Length = 290
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVLILADTLRDFDNVTVVNEDILKVDLAKHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAKPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|20094370|ref|NP_614217.1| dimethyladenosine transferase (rRNA methylase) [Methanopyrus
kandleri AV19]
gi|27151577|sp|Q8TWU7.1|RSMA_METKA RecName: Full=Probable ribosomal RNA small subunit
methyltransferase A; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName:
Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
dimethyltransferase
gi|19887438|gb|AAM02147.1| Dimethyladenosine transferase (rRNA methylase) [Methanopyrus
kandleri AV19]
Length = 278
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 108 LNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATV 166
L SK G PR+ LGQH+M++ I + + AA V+E DIVLEIGPG G LT L+ V
Sbjct: 10 LRSKYGIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTRAGQV 69
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
+A+E D MV +++ L++++ DF++ + KVVANIP
Sbjct: 70 IAVELDGRMVEILKRELGEAPNLEIVRADFLEYDV-------------PDDVNKVVANIP 116
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
+NIS+ + +LL + VL Q E A R+V EP + +Y + + VN +
Sbjct: 117 YNISSPITFKLLELD--IDVAVLTYQREFAERMVAEPG--SKKYSRLTVMVNLLA 167
>gi|148985565|ref|ZP_01818754.1| dimethyladenosine transferase [Streptococcus pneumoniae SP3-BS71]
gi|387758157|ref|YP_006065136.1| dimethyladenosine transferase [Streptococcus pneumoniae OXC141]
gi|418232966|ref|ZP_12859551.1| dimethyladenosine transferase [Streptococcus pneumoniae GA07228]
gi|418237420|ref|ZP_12863985.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19690]
gi|147922285|gb|EDK73406.1| dimethyladenosine transferase [Streptococcus pneumoniae SP3-BS71]
gi|301800746|emb|CBW33394.1| dimethyladenosine transferase [Streptococcus pneumoniae OXC141]
gi|353885649|gb|EHE65437.1| dimethyladenosine transferase [Streptococcus pneumoniae GA07228]
gi|353891115|gb|EHE70873.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19690]
gi|429320126|emb|CCP33457.1| dimethyladenosine transferase [Streptococcus pneumoniae SPN034183]
gi|429321945|emb|CCP35431.1| dimethyladenosine transferase [Streptococcus pneumoniae SPN994039]
gi|429323765|emb|CCP31472.1| dimethyladenosine transferase [Streptococcus pneumoniae SPN994038]
Length = 290
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AECAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|434403927|ref|YP_007146812.1| dimethyladenosine transferase [Cylindrospermum stagnale PCC 7417]
gi|428258182|gb|AFZ24132.1| dimethyladenosine transferase [Cylindrospermum stagnale PCC 7417]
Length = 271
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D + AA + D VLEIGPGTG LT LL A +++A+E D
Sbjct: 4 PRKQFAQHWLKSEKALDAIIKAAECTKDDGVLEIGPGTGILTRRLLPAVKSLVAVEIDYD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + SH+ + +K + KVVANIP+NI+ +I
Sbjct: 64 LCKLLAKQLGKTENFLLLQGDFLTLDLASHLAAFPNFQKQN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P + + +VLL+Q+E A RL
Sbjct: 120 EKLLGTIANPNPEPYDSIVLLVQKEVAERL 149
>gi|83588925|ref|YP_428934.1| dimethyladenosine transferase [Moorella thermoacetica ATCC 39073]
gi|119365033|sp|Q2RME8.1|RSMA_MOOTA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|83571839|gb|ABC18391.1| dimethyladenosine transferase [Moorella thermoacetica ATCC 39073]
Length = 288
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 3/178 (1%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T+ + KG PRKS GQ++++++ I ++A AA V GD V+EIGPG G+LT L
Sbjct: 10 TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+AIE D+ + + E A D ++++ D +K + + + KVVA
Sbjct: 70 GLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVA 129
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T ++ LL +E+VL++Q E R L P +Y +++ V +Y+
Sbjct: 130 NLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPG--GKDYGALSVVVQYYT 185
>gi|217076587|ref|YP_002334303.1| dimethyladenosine transferase [Thermosipho africanus TCF52B]
gi|217036440|gb|ACJ74962.1| dimethyladenosine transferase [Thermosipho africanus TCF52B]
Length = 261
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 89/145 (61%), Gaps = 14/145 (9%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ N EI ++ +A VQ G+ VLEIGPG G++T L+ GA V+A+E D+ +
Sbjct: 15 KKSLGQNFLTNLEIAKKIVESANVQTGETVLEIGPGAGTITEFLIKKGANVVAVEIDKRL 74
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
++ +RF + K+ +DF+K F+ + F KVV+NIP++I+ +IK
Sbjct: 75 TPIL-DRFNEFENFKIYYQDFLK----------FDMKLLGENF-KVVSNIPYSITGMIIK 122
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV 260
++L FS VL++Q+E RL+
Sbjct: 123 KILFSK--FSTAVLMVQKEVGDRLL 145
>gi|170077519|ref|YP_001734157.1| S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase
[Synechococcus sp. PCC 7002]
gi|226732632|sp|B1XIV9.1|RSMA_SYNP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|169885188|gb|ACA98901.1| S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase
[Synechococcus sp. PCC 7002]
Length = 273
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 9/151 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + +I D++ AAA +Q D VLEIGPG G+LT+ LL +L++E D+
Sbjct: 3 PRKRFGQHWLTDQQILDEIVAAANLQPTDRVLEIGPGKGALTSRLLPQVEALLSVEIDRD 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + + +L+ D+++ I + L F + ++ KVVANIP+NI+ ++
Sbjct: 63 LCKYMVKNYGDRPNFLLLEADYLQTDI-NEFLGDFPQFQNPR---KVVANIPYNITGPIL 118
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV 260
++LL P + F +VLL+Q+E RLV
Sbjct: 119 EKLLGTIDRPNSNPFESIVLLIQKEVGDRLV 149
>gi|440755385|ref|ZP_20934587.1| dimethyladenosine transferase [Microcystis aeruginosa TAIHU98]
gi|440175591|gb|ELP54960.1| dimethyladenosine transferase [Microcystis aeruginosa TAIHU98]
Length = 268
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 19/172 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF LSL + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDF---------LSL--KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
++LL P + + LL+Q+E A RLV PS T Y +++ + + +
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLVQKEVAERLVAVPS--TKAYSALSVRIQYLA 163
>gi|332705358|ref|ZP_08425436.1| dimethyladenosine transferase [Moorea producens 3L]
gi|332355718|gb|EGJ35180.1| dimethyladenosine transferase [Moorea producens 3L]
Length = 282
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 10/156 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK QH++ + E +Q+ AA +Q+ D +LEIGPGTG LT LL +V+A+E D+ +
Sbjct: 6 RKKFAQHWLRSEEALNQIVTAANLQKSDRILEIGPGTGILTQRLLPFVQSVVAVEIDRDL 65
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ ++ ID +LQ DF+ + + + + +K + KVVANIP+NI+ +++
Sbjct: 66 CRLLVKKLGKIDNFLLLQGDFLSLDLDTLLANFSNFQKPN----KVVANIPYNITGPILE 121
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL-VEPSLR 265
+LL P F +VLL+Q+E A RL +PS R
Sbjct: 122 KLLGTITQPAVPGFDLIVLLVQKEVAQRLYAKPSSR 157
>gi|306820341|ref|ZP_07453980.1| dimethyladenosine transferase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304551670|gb|EFM39622.1| dimethyladenosine transferase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 287
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 96/163 (58%), Gaps = 6/163 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ++++N I D++ +A + D+VLEIG G G+LT L V+A+E D++++
Sbjct: 24 KSLGQNFLINENILDKIIESADISSDDVVLEIGTGIGTLTQRLCENAKKVIAVEIDRNLI 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E ++ D + ++ +D +K I + +L +K KVVAN+P+ I+T +I +
Sbjct: 84 PILNETLSNYDNITIINKDILKTDINEELKNLSINQK-----IKVVANLPYYITTPIIMK 138
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
+L +VL+LQ+E A R+ S T +Y ++I V +Y
Sbjct: 139 VLEDKVNVDCMVLMLQKEVADRM-NASPSTKDYGSLSIAVQYY 180
>gi|166363194|ref|YP_001655467.1| dimethyladenosine transferase [Microcystis aeruginosa NIES-843]
gi|166085567|dbj|BAG00275.1| dimethyladenosine transferase [Microcystis aeruginosa NIES-843]
Length = 268
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 19/172 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF LSL + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDF---------LSL--KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
++LL P + + LL+Q+E A RLV PS T Y +++ + + +
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLVQKEVAERLVAVPS--TKAYSALSVRIQYLA 163
>gi|402309572|ref|ZP_10828565.1| dimethyladenosine transferase [Eubacterium sp. AS15]
gi|400372539|gb|EJP25483.1| dimethyladenosine transferase [Eubacterium sp. AS15]
Length = 287
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 97/164 (59%), Gaps = 8/164 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ++++N I D++ +A + D+VLEIG G G+LT L V+A+E D++++
Sbjct: 24 KSLGQNFLINENILDKIIESADISSDDVVLEIGTGIGTLTQRLCENAKKVIAVEIDRNLI 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E ++ D + ++ +D +K I + +L +K KVVAN+P+ I+T +I +
Sbjct: 84 PILNETLSNYDNITIINKDILKTDINEELKNLSINQK-----IKVVANLPYYITTPIIMK 138
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+L +VL+LQ+E A R+ PS T +Y ++I V +Y
Sbjct: 139 VLEDKVNVDCMVLMLQKEVAERMNASPS--TKDYGSLSIAVQYY 180
>gi|425435045|ref|ZP_18815505.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9432]
gi|389675218|emb|CCH95619.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9432]
Length = 268
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 19/172 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF LSL + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDF---------LSL--KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
++LL P + + LL+Q+E A RLV PS T Y +++ + + +
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLVQKEVAERLVAVPS--TKAYSALSVRIQYLA 163
>gi|406576762|ref|ZP_11052387.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus sp. GMD6S]
gi|419817063|ref|ZP_14341233.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus sp. GMD4S]
gi|404460727|gb|EKA06971.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus sp. GMD6S]
gi|404466449|gb|EKA11785.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus sp. GMD4S]
Length = 290
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDNQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A ++A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEIMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|225859740|ref|YP_002741250.1| dimethyladenosine transferase [Streptococcus pneumoniae 70585]
gi|418147226|ref|ZP_12784000.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13637]
gi|254807886|sp|C1CA29.1|RSMA_STRP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|225720605|gb|ACO16459.1| dimethyladenosine transferase [Streptococcus pneumoniae 70585]
gi|353811154|gb|EHD91399.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13637]
Length = 290
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|182684919|ref|YP_001836666.1| dimethyladenosine transferase [Streptococcus pneumoniae CGSP14]
gi|303254092|ref|ZP_07340207.1| dimethyladenosine transferase [Streptococcus pneumoniae BS455]
gi|303260358|ref|ZP_07346328.1| dimethyladenosine transferase [Streptococcus pneumoniae SP-BS293]
gi|303262506|ref|ZP_07348448.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS292]
gi|303265137|ref|ZP_07351050.1| dimethyladenosine transferase [Streptococcus pneumoniae BS397]
gi|303266001|ref|ZP_07351896.1| dimethyladenosine transferase [Streptococcus pneumoniae BS457]
gi|303268067|ref|ZP_07353868.1| dimethyladenosine transferase [Streptococcus pneumoniae BS458]
gi|387760073|ref|YP_006067051.1| dimethyladenosine transferase [Streptococcus pneumoniae INV200]
gi|418140329|ref|ZP_12777152.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13338]
gi|418181335|ref|ZP_12817903.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41688]
gi|419515477|ref|ZP_14055101.1| dimethyladenosine transferase [Streptococcus pneumoniae
England14-9]
gi|421296813|ref|ZP_15747519.1| dimethyladenosine transferase [Streptococcus pneumoniae GA58581]
gi|421308189|ref|ZP_15758829.1| dimethyladenosine transferase [Streptococcus pneumoniae GA60132]
gi|226732631|sp|B2IM67.1|RSMA_STRPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|182630253|gb|ACB91201.1| dimethyladenosine transferase [Streptococcus pneumoniae CGSP14]
gi|301802662|emb|CBW35428.1| dimethyladenosine transferase [Streptococcus pneumoniae INV200]
gi|302598925|gb|EFL65956.1| dimethyladenosine transferase [Streptococcus pneumoniae BS455]
gi|302636406|gb|EFL66899.1| dimethyladenosine transferase [Streptococcus pneumoniae SP14-BS292]
gi|302638524|gb|EFL68989.1| dimethyladenosine transferase [Streptococcus pneumoniae SP-BS293]
gi|302642427|gb|EFL72773.1| dimethyladenosine transferase [Streptococcus pneumoniae BS458]
gi|302644442|gb|EFL74694.1| dimethyladenosine transferase [Streptococcus pneumoniae BS457]
gi|302645354|gb|EFL75588.1| dimethyladenosine transferase [Streptococcus pneumoniae BS397]
gi|353842161|gb|EHE22209.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41688]
gi|353904579|gb|EHE80047.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13338]
gi|379635164|gb|EHZ99724.1| dimethyladenosine transferase [Streptococcus pneumoniae
England14-9]
gi|395893799|gb|EJH04782.1| dimethyladenosine transferase [Streptococcus pneumoniae GA58581]
gi|395906363|gb|EJH17262.1| dimethyladenosine transferase [Streptococcus pneumoniae GA60132]
Length = 290
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+ E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMTFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|418203213|ref|ZP_12839639.1| dimethyladenosine transferase [Streptococcus pneumoniae GA52306]
gi|419454355|ref|ZP_13994318.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP04]
gi|421286227|ref|ZP_15737001.1| dimethyladenosine transferase [Streptococcus pneumoniae GA60190]
gi|353866217|gb|EHE46120.1| dimethyladenosine transferase [Streptococcus pneumoniae GA52306]
gi|379630796|gb|EHZ95376.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP04]
gi|395885062|gb|EJG96090.1| dimethyladenosine transferase [Streptococcus pneumoniae GA60190]
Length = 290
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 TERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|443328640|ref|ZP_21057235.1| dimethyladenosine transferase [Xenococcus sp. PCC 7305]
gi|442791771|gb|ELS01263.1| dimethyladenosine transferase [Xenococcus sp. PCC 7305]
Length = 282
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 98/174 (56%), Gaps = 16/174 (9%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQH++ + + DQ+A AA + D +LEIGPGTG LT LL + +VLA+E D+++
Sbjct: 10 KKRFGQHWLQSDRVLDQIANAAELNSSDRILEIGPGTGVLTRRLLGSVDSVLAVEIDKYL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHM--LSLFERRKSSSGFAKVVANIPFNISTDV 233
+ ++F +LQ DF+ I + LF+++ K+VANIP+NI+ +
Sbjct: 70 CKKLTKKFQEYQNFLLLQGDFLALDIPELVKPFPLFQKQ------TKIVANIPYNITGLI 123
Query: 234 IKQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSG 281
+++LL P + +VLL+Q+E RL PS T EY +++ + + +
Sbjct: 124 LEKLLGSISQPNTKDYESIVLLIQKEVGDRLTANPS--TKEYGALSVRIQYLAS 175
>gi|418973394|ref|ZP_13521388.1| dimethyladenosine transferase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383349283|gb|EID27228.1| dimethyladenosine transferase [Streptococcus pseudopneumoniae ATCC
BAA-960]
Length = 290
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + ++ + K+
Sbjct: 65 AECAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAKYI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|390441516|ref|ZP_10229581.1| Ribosomal RNA small subunit methyltransferase A [Microcystis sp.
T1-4]
gi|389835156|emb|CCI33707.1| Ribosomal RNA small subunit methyltransferase A [Microcystis sp.
T1-4]
Length = 268
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 16/151 (10%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF LSL + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDF---------LSL--KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV 260
++LL P + + LL+Q+E A RLV
Sbjct: 114 EKLLGSIAHPFTPPYQSITLLVQKEVAERLV 144
>gi|425471346|ref|ZP_18850206.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9701]
gi|389882782|emb|CCI36782.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9701]
Length = 268
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 93/172 (54%), Gaps = 19/172 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF+ + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDFLSLKL-----------EQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
++LL P + + LL+Q+E A RLV PS T Y +++ + + +
Sbjct: 114 EKLLGSIAHPFTPPYHSITLLVQKEVAERLVAVPS--TKAYSALSVRIQYLA 163
>gi|406589011|ref|ZP_11063466.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein,
partial [Streptococcus sp. GMD1S]
gi|419816520|ref|ZP_14340741.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein,
partial [Streptococcus sp. GMD2S]
gi|404459993|gb|EKA06288.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein,
partial [Streptococcus sp. GMD2S]
gi|404465426|gb|EKA10873.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein,
partial [Streptococcus sp. GMD1S]
Length = 195
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDNQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A ++A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEIMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|148998515|ref|ZP_01825956.1| dimethyladenosine transferase [Streptococcus pneumoniae SP11-BS70]
gi|168576615|ref|ZP_02722481.1| dimethyladenosine transferase [Streptococcus pneumoniae MLV-016]
gi|307068593|ref|YP_003877559.1| dimethyladenosine transferase [Streptococcus pneumoniae AP200]
gi|417699358|ref|ZP_12348528.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41317]
gi|418149322|ref|ZP_12786083.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13856]
gi|419454039|ref|ZP_13994008.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP03]
gi|419471863|ref|ZP_14011721.1| dimethyladenosine transferase [Streptococcus pneumoniae GA07914]
gi|419504703|ref|ZP_14044369.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47760]
gi|419506850|ref|ZP_14046510.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49194]
gi|421239305|ref|ZP_15695868.1| dimethyladenosine transferase [Streptococcus pneumoniae 2071247]
gi|421245753|ref|ZP_15702250.1| dimethyladenosine transferase [Streptococcus pneumoniae 2081685]
gi|421314839|ref|ZP_15765425.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47562]
gi|147755708|gb|EDK62754.1| dimethyladenosine transferase [Streptococcus pneumoniae SP11-BS70]
gi|183577641|gb|EDT98169.1| dimethyladenosine transferase [Streptococcus pneumoniae MLV-016]
gi|306410130|gb|ADM85557.1| Dimethyladenosine transferase (rRNA methylation) [Streptococcus
pneumoniae AP200]
gi|332199299|gb|EGJ13377.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41317]
gi|353811105|gb|EHD91351.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13856]
gi|379544108|gb|EHZ09254.1| dimethyladenosine transferase [Streptococcus pneumoniae GA07914]
gi|379604805|gb|EHZ69560.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47760]
gi|379605014|gb|EHZ69767.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49194]
gi|379624716|gb|EHZ89346.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP03]
gi|395600073|gb|EJG60232.1| dimethyladenosine transferase [Streptococcus pneumoniae 2071247]
gi|395606788|gb|EJG66889.1| dimethyladenosine transferase [Streptococcus pneumoniae 2081685]
gi|395912467|gb|EJH23326.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47562]
Length = 290
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYRVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|52078537|ref|YP_077328.1| dimethyladenosine transferase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319648566|ref|ZP_08002780.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2]
gi|404487407|ref|YP_006711513.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|423680435|ref|ZP_17655274.1| dimethyladenosine transferase [Bacillus licheniformis WX-02]
gi|62900505|sp|Q65PH9.1|RSMA_BACLD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|52001748|gb|AAU21690.1| dimethyladenosine transferase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52346401|gb|AAU39035.1| dimethyladenosine transferase RsmA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317389333|gb|EFV70146.1| dimethyladenosine transferase [Bacillus sp. BT1B_CT2]
gi|383441541|gb|EID49250.1| dimethyladenosine transferase [Bacillus licheniformis WX-02]
Length = 292
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 7/178 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + LN G +KSLGQ++++++ I D++ A V E V+EIGPG G+LT L
Sbjct: 11 TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A E DQ ++ ++ + + D + V+ +D +K +R+ M F+ VVA
Sbjct: 71 KKVTAFEIDQRLLPILEDTLSPYDNVTVIHQDVLKADVRAVMDEQFQ----DCDEVMVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
N+P+ ++T +I +LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 127 NLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYT 182
>gi|417935029|ref|ZP_12578349.1| dimethyladenosine transferase [Streptococcus mitis bv. 2 str.
F0392]
gi|340771599|gb|EGR94114.1| dimethyladenosine transferase [Streptococcus mitis bv. 2 str.
F0392]
Length = 290
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNKDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|169830264|ref|YP_001716246.1| dimethyladenosine transferase [Candidatus Desulforudis audaxviator
MP104C]
gi|169637108|gb|ACA58614.1| dimethyladenosine transferase [Candidatus Desulforudis audaxviator
MP104C]
Length = 299
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
+ L G PRKSLGQ++++ + + D++ AA V++ ++V+EIGPG G+LT L GA
Sbjct: 17 RLLAEYGLKPRKSLGQNFLVAAGVLDKILEAAEVEKDEVVIEIGPGVGALTRRLAEKGAR 76
Query: 166 VLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V A+E D ++ L++E + D+++++ D +K + + + +G KVVAN
Sbjct: 77 VAAVEIDGRLIPLLKEVLGDLGDRVRLINADALKVDYGALLAEM------GAGSFKVVAN 130
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+P+ I++ + L G F +VL++Q+E A R+ + T Y +++ V +++
Sbjct: 131 LPYYITSPFVAGFLEAGYRFERMVLMVQKEVADRMTAAN-GTESYGALSVLVAYHT 185
>gi|111658871|ref|ZP_01409492.1| hypothetical protein SpneT_02000042 [Streptococcus pneumoniae
TIGR4]
gi|148993153|ref|ZP_01822719.1| dimethyladenosine transferase [Streptococcus pneumoniae SP9-BS68]
gi|149021935|ref|ZP_01835922.1| dimethyladenosine transferase [Streptococcus pneumoniae SP23-BS72]
gi|168489990|ref|ZP_02714189.1| dimethyladenosine transferase [Streptococcus pneumoniae SP195]
gi|221232709|ref|YP_002511863.1| dimethyladenosine transferase [Streptococcus pneumoniae ATCC
700669]
gi|225861802|ref|YP_002743311.1| dimethyladenosine transferase [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230181|ref|ZP_06963862.1| dimethyladenosine transferase [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255257|ref|ZP_06978843.1| dimethyladenosine transferase [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503755|ref|YP_003725695.1| dimethyladenosine transferase [Streptococcus pneumoniae
TCH8431/19A]
gi|387789028|ref|YP_006254096.1| hypothetical protein MYY_1906 [Streptococcus pneumoniae ST556]
gi|415700640|ref|ZP_11458174.1| dimethyladenosine transferase [Streptococcus pneumoniae 459-5]
gi|415750273|ref|ZP_11478187.1| dimethyladenosine transferase [Streptococcus pneumoniae SV35]
gi|415753186|ref|ZP_11480168.1| dimethyladenosine transferase [Streptococcus pneumoniae SV36]
gi|417313444|ref|ZP_12100155.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04375]
gi|417679946|ref|ZP_12329341.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17570]
gi|418083806|ref|ZP_12721000.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44288]
gi|418085990|ref|ZP_12723167.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47281]
gi|418094787|ref|ZP_12731912.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49138]
gi|418101460|ref|ZP_12738541.1| dimethyladenosine transferase [Streptococcus pneumoniae 7286-06]
gi|418103663|ref|ZP_12740734.1| dimethyladenosine transferase [Streptococcus pneumoniae NP070]
gi|418119460|ref|ZP_12756414.1| dimethyladenosine transferase [Streptococcus pneumoniae GA18523]
gi|418124343|ref|ZP_12761272.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44378]
gi|418126618|ref|ZP_12763522.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44511]
gi|418128878|ref|ZP_12765769.1| dimethyladenosine transferase [Streptococcus pneumoniae NP170]
gi|418131144|ref|ZP_12768026.1| dimethyladenosine transferase [Streptococcus pneumoniae GA07643]
gi|418138089|ref|ZP_12774925.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11663]
gi|418142516|ref|ZP_12779326.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13455]
gi|418151501|ref|ZP_12788245.1| dimethyladenosine transferase [Streptococcus pneumoniae GA14798]
gi|418153754|ref|ZP_12790490.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16121]
gi|418158327|ref|ZP_12795040.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16833]
gi|418165297|ref|ZP_12801962.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17371]
gi|418170089|ref|ZP_12806729.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19077]
gi|418172139|ref|ZP_12808758.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19451]
gi|418179111|ref|ZP_12815691.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41565]
gi|418187971|ref|ZP_12824492.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47360]
gi|418192411|ref|ZP_12828912.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47388]
gi|418196648|ref|ZP_12833122.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47688]
gi|418198836|ref|ZP_12835291.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47778]
gi|418200997|ref|ZP_12837438.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47976]
gi|418215166|ref|ZP_12841899.1| dimethyladenosine transferase [Streptococcus pneumoniae GA54644]
gi|418224197|ref|ZP_12850834.1| dimethyladenosine transferase [Streptococcus pneumoniae 5185-06]
gi|418228480|ref|ZP_12855095.1| dimethyladenosine transferase [Streptococcus pneumoniae 3063-00]
gi|418230770|ref|ZP_12857368.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP01]
gi|418235167|ref|ZP_12861742.1| dimethyladenosine transferase [Streptococcus pneumoniae GA08780]
gi|419425936|ref|ZP_13966129.1| dimethyladenosine transferase [Streptococcus pneumoniae 7533-05]
gi|419428047|ref|ZP_13968226.1| dimethyladenosine transferase [Streptococcus pneumoniae 5652-06]
gi|419430228|ref|ZP_13970389.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11856]
gi|419436793|ref|ZP_13976877.1| dimethyladenosine transferase [Streptococcus pneumoniae 8190-05]
gi|419437173|ref|ZP_13977250.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13499]
gi|419445505|ref|ZP_13985518.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19923]
gi|419447657|ref|ZP_13987660.1| dimethyladenosine transferase [Streptococcus pneumoniae 7879-04]
gi|419449776|ref|ZP_13989771.1| dimethyladenosine transferase [Streptococcus pneumoniae 4075-00]
gi|419451912|ref|ZP_13991894.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP02]
gi|419474059|ref|ZP_14013906.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13430]
gi|419476306|ref|ZP_14016140.1| dimethyladenosine transferase [Streptococcus pneumoniae GA14688]
gi|419478630|ref|ZP_14018452.1| dimethyladenosine transferase [Streptococcus pneumoniae GA18068]
gi|419482995|ref|ZP_14022780.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40563]
gi|419485186|ref|ZP_14024960.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43257]
gi|419487450|ref|ZP_14027211.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44128]
gi|419502646|ref|ZP_14042326.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47628]
gi|419509064|ref|ZP_14048714.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49542]
gi|419519704|ref|ZP_14059309.1| dimethyladenosine transferase [Streptococcus pneumoniae GA08825]
gi|419524321|ref|ZP_14063893.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13723]
gi|419528953|ref|ZP_14068492.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17719]
gi|421209737|ref|ZP_15666748.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070005]
gi|421221050|ref|ZP_15677885.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070425]
gi|421223299|ref|ZP_15680080.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070531]
gi|421225815|ref|ZP_15682551.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070768]
gi|421241433|ref|ZP_15697977.1| dimethyladenosine transferase [Streptococcus pneumoniae 2080913]
gi|421242348|ref|ZP_15698873.1| dimethyladenosine transferase [Streptococcus pneumoniae 2081074]
gi|421246109|ref|ZP_15702600.1| dimethyladenosine transferase [Streptococcus pneumoniae 2082170]
gi|421271412|ref|ZP_15722264.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR48]
gi|421273649|ref|ZP_15724488.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR55]
gi|421279743|ref|ZP_15730548.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17301]
gi|421288398|ref|ZP_15739158.1| dimethyladenosine transferase [Streptococcus pneumoniae GA58771]
gi|421290536|ref|ZP_15741285.1| dimethyladenosine transferase [Streptococcus pneumoniae GA54354]
gi|421294987|ref|ZP_15745707.1| dimethyladenosine transferase [Streptococcus pneumoniae GA56113]
gi|421301812|ref|ZP_15752481.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19998]
gi|421305926|ref|ZP_15756579.1| dimethyladenosine transferase [Streptococcus pneumoniae GA62331]
gi|27151593|sp|Q97NN5.2|RSMA_STRPN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|254807887|sp|B8ZNY9.1|RSMA_STRPJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|254807891|sp|C1CTN9.1|RSMA_STRZT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|147928127|gb|EDK79145.1| dimethyladenosine transferase [Streptococcus pneumoniae SP9-BS68]
gi|147929973|gb|EDK80961.1| dimethyladenosine transferase [Streptococcus pneumoniae SP23-BS72]
gi|183571617|gb|EDT92145.1| dimethyladenosine transferase [Streptococcus pneumoniae SP195]
gi|220675171|emb|CAR69755.1| dimethyladenosine transferase [Streptococcus pneumoniae ATCC
700669]
gi|225727338|gb|ACO23189.1| dimethyladenosine transferase [Streptococcus pneumoniae
Taiwan19F-14]
gi|298239350|gb|ADI70481.1| dimethyladenosine transferase [Streptococcus pneumoniae
TCH8431/19A]
gi|327389149|gb|EGE87495.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04375]
gi|332072066|gb|EGI82553.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17570]
gi|353753761|gb|EHD34378.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44288]
gi|353755172|gb|EHD35778.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47281]
gi|353763595|gb|EHD44148.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49138]
gi|353769521|gb|EHD50038.1| dimethyladenosine transferase [Streptococcus pneumoniae 7286-06]
gi|353774442|gb|EHD54933.1| dimethyladenosine transferase [Streptococcus pneumoniae NP070]
gi|353789943|gb|EHD70331.1| dimethyladenosine transferase [Streptococcus pneumoniae GA18523]
gi|353794677|gb|EHD75030.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44378]
gi|353795227|gb|EHD75578.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44511]
gi|353797752|gb|EHD78084.1| dimethyladenosine transferase [Streptococcus pneumoniae NP170]
gi|353801370|gb|EHD81674.1| dimethyladenosine transferase [Streptococcus pneumoniae GA07643]
gi|353804127|gb|EHD84413.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13455]
gi|353813439|gb|EHD93670.1| dimethyladenosine transferase [Streptococcus pneumoniae GA14798]
gi|353815778|gb|EHD95992.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16121]
gi|353821112|gb|EHE01291.1| dimethyladenosine transferase [Streptococcus pneumoniae GA16833]
gi|353828016|gb|EHE08161.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17371]
gi|353833401|gb|EHE13512.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19077]
gi|353834262|gb|EHE14366.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19451]
gi|353841425|gb|EHE21481.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41565]
gi|353848852|gb|EHE28863.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47360]
gi|353854733|gb|EHE34705.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47388]
gi|353859315|gb|EHE39267.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47688]
gi|353860594|gb|EHE40537.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47778]
gi|353863564|gb|EHE43487.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47976]
gi|353868731|gb|EHE48616.1| dimethyladenosine transferase [Streptococcus pneumoniae GA54644]
gi|353877851|gb|EHE57691.1| dimethyladenosine transferase [Streptococcus pneumoniae 5185-06]
gi|353879809|gb|EHE59631.1| dimethyladenosine transferase [Streptococcus pneumoniae 3063-00]
gi|353884892|gb|EHE64685.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP01]
gi|353885883|gb|EHE65668.1| dimethyladenosine transferase [Streptococcus pneumoniae GA08780]
gi|353900081|gb|EHE75642.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11663]
gi|379138770|gb|AFC95561.1| hypothetical protein MYY_1906 [Streptococcus pneumoniae ST556]
gi|379542114|gb|EHZ07278.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13499]
gi|379548924|gb|EHZ14037.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11856]
gi|379549687|gb|EHZ14791.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13430]
gi|379555688|gb|EHZ20753.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13723]
gi|379557886|gb|EHZ22924.1| dimethyladenosine transferase [Streptococcus pneumoniae GA14688]
gi|379562965|gb|EHZ27971.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17719]
gi|379563908|gb|EHZ28906.1| dimethyladenosine transferase [Streptococcus pneumoniae GA18068]
gi|379569926|gb|EHZ34892.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19923]
gi|379578460|gb|EHZ43372.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40563]
gi|379581106|gb|EHZ45994.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43257]
gi|379585086|gb|EHZ49947.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44128]
gi|379598396|gb|EHZ63186.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47628]
gi|379610272|gb|EHZ75004.1| dimethyladenosine transferase [Streptococcus pneumoniae GA49542]
gi|379611461|gb|EHZ76185.1| dimethyladenosine transferase [Streptococcus pneumoniae 8190-05]
gi|379612413|gb|EHZ77131.1| dimethyladenosine transferase [Streptococcus pneumoniae 7879-04]
gi|379616656|gb|EHZ81350.1| dimethyladenosine transferase [Streptococcus pneumoniae 5652-06]
gi|379617434|gb|EHZ82123.1| dimethyladenosine transferase [Streptococcus pneumoniae 7533-05]
gi|379621642|gb|EHZ86285.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP02]
gi|379621774|gb|EHZ86416.1| dimethyladenosine transferase [Streptococcus pneumoniae 4075-00]
gi|379639743|gb|EIA04283.1| dimethyladenosine transferase [Streptococcus pneumoniae GA08825]
gi|381308833|gb|EIC49676.1| dimethyladenosine transferase [Streptococcus pneumoniae SV36]
gi|381314024|gb|EIC54801.1| dimethyladenosine transferase [Streptococcus pneumoniae 459-5]
gi|381316819|gb|EIC57563.1| dimethyladenosine transferase [Streptococcus pneumoniae SV35]
gi|395572392|gb|EJG32989.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070005]
gi|395585528|gb|EJG45908.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070425]
gi|395586584|gb|EJG46952.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070531]
gi|395588508|gb|EJG48837.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070768]
gi|395606711|gb|EJG66814.1| dimethyladenosine transferase [Streptococcus pneumoniae 2080913]
gi|395611479|gb|EJG71551.1| dimethyladenosine transferase [Streptococcus pneumoniae 2081074]
gi|395616228|gb|EJG76239.1| dimethyladenosine transferase [Streptococcus pneumoniae 2082170]
gi|395866162|gb|EJG77294.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR48]
gi|395872964|gb|EJG84058.1| dimethyladenosine transferase [Streptococcus pneumoniae SPAR55]
gi|395878479|gb|EJG89544.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17301]
gi|395885514|gb|EJG96537.1| dimethyladenosine transferase [Streptococcus pneumoniae GA58771]
gi|395886265|gb|EJG97282.1| dimethyladenosine transferase [Streptococcus pneumoniae GA54354]
gi|395892180|gb|EJH03172.1| dimethyladenosine transferase [Streptococcus pneumoniae GA56113]
gi|395897947|gb|EJH08900.1| dimethyladenosine transferase [Streptococcus pneumoniae GA19998]
gi|395904355|gb|EJH15272.1| dimethyladenosine transferase [Streptococcus pneumoniae GA62331]
Length = 290
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|421211824|ref|ZP_15668805.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070035]
gi|421232664|ref|ZP_15689304.1| dimethyladenosine transferase [Streptococcus pneumoniae 2080076]
gi|395572210|gb|EJG32810.1| dimethyladenosine transferase [Streptococcus pneumoniae 2070035]
gi|395594011|gb|EJG54252.1| dimethyladenosine transferase [Streptococcus pneumoniae 2080076]
Length = 290
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|425466335|ref|ZP_18845638.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9809]
gi|389831207|emb|CCI26228.1| Ribosomal RNA small subunit methyltransferase A [Microcystis
aeruginosa PCC 9809]
Length = 268
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 19/172 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGARLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF LSL + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDF---------LSL--KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
++LL P + + LL+Q+E A RLV PS T Y +++ + + +
Sbjct: 114 ERLLGSIAHPFTPPYQSITLLVQKEVAERLVAVPS--TKAYSALSVRIQYLA 163
>gi|323340527|ref|ZP_08080782.1| dimethyladenosine transferase [Lactobacillus ruminis ATCC 25644]
gi|417972535|ref|ZP_12613433.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus ruminis ATCC 25644]
gi|323092071|gb|EFZ34688.1| dimethyladenosine transferase [Lactobacillus ruminis ATCC 25644]
gi|346331108|gb|EGX99329.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus ruminis ATCC 25644]
Length = 296
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 98/164 (59%), Gaps = 7/164 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I ++ AAA V E D V+EIGPG G+LT L + V+A+E D +
Sbjct: 26 KKSLGQNFLTDLNILKKIVAAAEVGEEDDVIEIGPGIGALTEQLAKSAHQVMALEIDSRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + D +K++++D +K ++ + F+ R K+VAN+P+ I+T ++
Sbjct: 86 IPVLSETLSPYDNVKIVEQDVLKADLKELIAQNFDGRHK----IKLVANLPYYITTPIVM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
LL + F +V+++Q+E A RL +P T +Y +++ V +
Sbjct: 142 HLLEVDVDFETIVVMMQKEVADRLAAQPG--TKDYGSLSVAVQY 183
>gi|335998358|ref|ZP_08564270.1| dimethyladenosine transferase [Lactobacillus ruminis SPM0211]
gi|335348872|gb|EGM50373.1| dimethyladenosine transferase [Lactobacillus ruminis SPM0211]
Length = 296
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 98/164 (59%), Gaps = 7/164 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I ++ AAA V E D V+EIGPG G+LT L + V+A+E D +
Sbjct: 26 KKSLGQNFLTDLNILKKIVAAAEVGEEDDVIEIGPGIGALTEQLAKSAHQVMALEIDSRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + D +K++++D +K ++ + F+ R K+VAN+P+ I+T ++
Sbjct: 86 IPVLSETLSPYDNVKIVEQDVLKADLKELIAQNFDGRHK----IKLVANLPYYITTPIVM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
LL + F +V+++Q+E A RL +P T +Y +++ V +
Sbjct: 142 HLLDVDVDFETIVVMMQKEVADRLAAQPG--TKDYGSLSVAVQY 183
>gi|169834364|ref|YP_001695338.1| dimethyladenosine transferase [Streptococcus pneumoniae
Hungary19A-6]
gi|194397125|ref|YP_002038567.1| dimethyladenosine transferase [Streptococcus pneumoniae G54]
gi|237651002|ref|ZP_04525254.1| dimethyladenosine transferase [Streptococcus pneumoniae CCRI 1974]
gi|237822560|ref|ZP_04598405.1| dimethyladenosine transferase [Streptococcus pneumoniae CCRI
1974M2]
gi|418122033|ref|ZP_12758975.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44194]
gi|419458539|ref|ZP_13998480.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02254]
gi|419491895|ref|ZP_14031629.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47179]
gi|419494091|ref|ZP_14033815.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47210]
gi|419533169|ref|ZP_14072683.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47794]
gi|421228271|ref|ZP_15684968.1| dimethyladenosine transferase [Streptococcus pneumoniae 2072047]
gi|421275681|ref|ZP_15726509.1| dimethyladenosine transferase [Streptococcus pneumoniae GA52612]
gi|226732629|sp|B5E2H6.1|RSMA_STRP4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226732630|sp|B1I8T7.1|RSMA_STRPI RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|168996866|gb|ACA37478.1| dimethyladenosine transferase [Streptococcus pneumoniae
Hungary19A-6]
gi|194356792|gb|ACF55240.1| dimethyladenosine transferase [Streptococcus pneumoniae G54]
gi|353791508|gb|EHD71884.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44194]
gi|379529422|gb|EHY94669.1| dimethyladenosine transferase [Streptococcus pneumoniae GA02254]
gi|379591427|gb|EHZ56252.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47179]
gi|379592070|gb|EHZ56888.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47210]
gi|379604913|gb|EHZ69667.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47794]
gi|395592992|gb|EJG53246.1| dimethyladenosine transferase [Streptococcus pneumoniae 2072047]
gi|395872856|gb|EJG83952.1| dimethyladenosine transferase [Streptococcus pneumoniae GA52612]
Length = 290
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|293333490|ref|NP_001168088.1| uncharacterized protein LOC100381822 [Zea mays]
gi|223945939|gb|ACN27053.1| unknown [Zea mays]
Length = 170
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 59/71 (83%)
Query: 210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEY 269
E+ ++ AKV +N+PFN+ST+V+K LLPMGD+FS VVL+LQ+ETA+RL + S+++ EY
Sbjct: 3 EKYGATKKLAKVASNLPFNVSTEVVKLLLPMGDVFSVVVLMLQDETAVRLADASIQSPEY 62
Query: 270 RPINIFVNFYS 280
R IN+FV+FYS
Sbjct: 63 RSINVFVDFYS 73
>gi|347524947|ref|YP_004831695.1| Dimethyladenosine transferase [Lactobacillus ruminis ATCC 27782]
gi|345283906|gb|AEN77759.1| Dimethyladenosine transferase [Lactobacillus ruminis ATCC 27782]
Length = 296
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 98/164 (59%), Gaps = 7/164 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I ++ AAA V E D V+EIGPG G+LT L + V+A+E D +
Sbjct: 26 KKSLGQNFLTDLNILKKIVAAAEVGEEDDVIEIGPGIGALTEQLAKSAHQVMALEIDSRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + D +K++++D +K ++ + F+ R K+VAN+P+ I+T ++
Sbjct: 86 IPVLSETLSPYDNVKIVEQDVLKADLKELIAQNFDGRHK----IKLVANLPYYITTPIVM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
LL + F +V+++Q+E A RL +P T +Y +++ V +
Sbjct: 142 HLLEVDVDFETIVVMMQKEVADRLAAQPG--TKDYGSLSVAVQY 183
>gi|225575697|ref|ZP_03784307.1| hypothetical protein RUMHYD_03790 [Blautia hydrogenotrophica DSM
10507]
gi|225037077|gb|EEG47323.1| dimethyladenosine transferase [Blautia hydrogenotrophica DSM 10507]
Length = 294
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 102/182 (56%), Gaps = 8/182 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI+ L +K GQ++++++ + D++ A+ +Q+ D VLEIGPG G++T L
Sbjct: 8 DPKNTIEILKKYDFVFQKRFGQNFLIDTHVLDKIIRASDIQKSDFVLEIGPGIGTMTQYL 67
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+A V+A+E D+ ++ ++++ +S + V+ ED +K IR + E R
Sbjct: 68 ADAAREVVAVEIDKSLIPILKDTLSSYSNVTVINEDVLKVDIR----KIAEERNEGKPI- 122
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +
Sbjct: 123 KVVANLPYYITTPIIMGLFEKKVPIESITIMVQKEVADRMKVGPG--TKDYGALSLAVQY 180
Query: 279 YS 280
Y+
Sbjct: 181 YA 182
>gi|409385600|ref|ZP_11238177.1| Dimethyladenosine transferase [Lactococcus raffinolactis 4877]
gi|399207015|emb|CCK19092.1| Dimethyladenosine transferase [Lactococcus raffinolactis 4877]
Length = 290
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 98/180 (54%), Gaps = 5/180 (2%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KSLGQ+++ ++ I ++ A + V+EIGPG G+LT +
Sbjct: 5 DYRVTKAILDRHGFSFKKSLGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFI 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ ED +K +++H+ + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVTVINEDVLKADLQTHI----RKFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R + + T Y ++I V +Y
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFTEFVVMMQKEVADR-ISAAPNTKAYGSLSIAVQYY 179
>gi|322373748|ref|ZP_08048284.1| dimethyladenosine transferase [Streptococcus sp. C150]
gi|321278790|gb|EFX55859.1| dimethyladenosine transferase [Streptococcus sp. C150]
Length = 290
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 100/181 (55%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ +V ++ + D +KV+ ED +K +++ + K+ +
Sbjct: 65 AENAAEVMAFEIDERLVPILEDTLRDHDNIKVINEDVLKADLQTRVKEF----KNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|227873154|ref|ZP_03991445.1| dimethyladenosine transferase [Oribacterium sinus F0268]
gi|227840985|gb|EEJ51324.1| dimethyladenosine transferase [Oribacterium sinus F0268]
Length = 312
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 100/183 (54%), Gaps = 10/183 (5%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI L +K GQ++++++ + D + + A +Q+ D+V+EIGPG G+LT L
Sbjct: 19 DSKETIAVLQRTNFQFKKQFGQNFLIDASVLDHIISYAKIQKEDLVIEIGPGIGTLTEAL 78
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
V+AIE D ++ ++ E A+ + ++L +D +K + E K GF+
Sbjct: 79 CEHAGQVIAIEIDDKLIPILEENLAAKENFRLLHQDVLK-------VDFTELLKEYPGFS 131
Query: 220 --KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVN 277
KVVAN+P+ I+T ++ LL S + +++Q+E A R+ + T +Y +++ V
Sbjct: 132 SVKVVANLPYYITTPILLSLLEKKLPLSSITVMVQKEVAERM-QAGPGTKDYGALSLAVQ 190
Query: 278 FYS 280
+YS
Sbjct: 191 YYS 193
>gi|419707667|ref|ZP_14235149.1| Ribosomal RNA small subunit methyltransferase A [Streptococcus
salivarius PS4]
gi|383282667|gb|EIC80649.1| Ribosomal RNA small subunit methyltransferase A [Streptococcus
salivarius PS4]
Length = 290
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 100/181 (55%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ +V ++ + D +KV+ ED +K +++ + K+ +
Sbjct: 65 AENAAEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----KNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|335045398|ref|ZP_08538421.1| dimethyladenosine transferase [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759184|gb|EGL36741.1| dimethyladenosine transferase [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 288
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 97/181 (53%), Gaps = 6/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI L +K GQ+++++S + D + + A +Q+ D+V+EIGPG G+LT L
Sbjct: 6 DSKETIAVLQRTNFQFKKQFGQNFLIDSSVLDHIISYAKIQKEDLVIEIGPGIGTLTEAL 65
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
V+AIE D ++ ++ E A + ++L +D +K + + S
Sbjct: 66 CEHAGQVIAIEIDDKLIPILEENLAGKENFRLLHQDVLKVDFTELL-----KEYPSFSSV 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ LL + +++Q+E ALR+ + + T +Y +++ V +Y
Sbjct: 121 KVVANLPYYITTPILMDLLEKKLPLKSITVMVQKEVALRM-KAAPGTKDYGALSLAVQYY 179
Query: 280 S 280
S
Sbjct: 180 S 180
>gi|307128183|ref|YP_003880214.1| dimethyladenosine transferase [Streptococcus pneumoniae 670-6B]
gi|418133429|ref|ZP_12770298.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11304]
gi|306485245|gb|ADM92114.1| dimethyladenosine transferase [Streptococcus pneumoniae 670-6B]
gi|353804370|gb|EHD84653.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11304]
Length = 290
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|298492284|ref|YP_003722461.1| dimethyladenosine transferase ['Nostoc azollae' 0708]
gi|298234202|gb|ADI65338.1| dimethyladenosine transferase ['Nostoc azollae' 0708]
Length = 277
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + + + AA QE D VLEIGPGTG LT LL ++LA+E D
Sbjct: 4 PRKQFAQHWLKSEKALNTIVKAAECQETDRVLEIGPGTGILTRRLLPLVHSLLAVEIDPD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ ++ S + + + +K + KVVANIP+NI+ +I
Sbjct: 64 LCKLLVKQLGERENFLLLQGDFLTLNVPSQLTAFSKFQKQN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P + + +VLL+Q+E A RL
Sbjct: 120 EKLLGTIASPNPEPYDSIVLLVQKEVAERL 149
>gi|421490665|ref|ZP_15938034.1| dimethyladenosine transferase [Streptococcus anginosus SK1138]
gi|400372562|gb|EJP25504.1| dimethyladenosine transferase [Streptococcus anginosus SK1138]
Length = 291
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ ED +K +++ + + S+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVRVINEDILKSDLQARI-----KEFSNPNLP 119
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVN 277
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V
Sbjct: 120 IKVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQ 177
Query: 278 FY 279
+Y
Sbjct: 178 YY 179
>gi|398309127|ref|ZP_10512601.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus mojavensis RO-H-1]
Length = 292
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFKDCDEVMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 139 KLLEENLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 182
>gi|417793672|ref|ZP_12440944.1| dimethyladenosine transferase [Streptococcus oralis SK255]
gi|334272327|gb|EGL90693.1| dimethyladenosine transferase [Streptococcus oralis SK255]
Length = 290
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + ++ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQYIQNF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|418081628|ref|ZP_12718836.1| dimethyladenosine transferase [Streptococcus pneumoniae 6735-05]
gi|353750754|gb|EHD31391.1| dimethyladenosine transferase [Streptococcus pneumoniae 6735-05]
Length = 290
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLMPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQQEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|189425372|ref|YP_001952549.1| dimethyladenosine transferase [Geobacter lovleyi SZ]
gi|189421631|gb|ACD96029.1| dimethyladenosine transferase [Geobacter lovleyi SZ]
Length = 271
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 87/145 (60%), Gaps = 9/145 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK+LGQ+++ + I ++ A +Q D VLE+GPG G+LT +L ++A+E D+
Sbjct: 8 PRKALGQNFLSDHNIIRKILTTAHLQPTDRVLEVGPGRGALTELLAAQARHLVAVEFDRD 67
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+RERFA Q+ + ++D ++ FE+ S + KVVAN+P+NIST V+
Sbjct: 68 LAALLRERFAGQPQVMIHEQDILQVD--------FEQLLGSHTY-KVVANLPYNISTPVL 118
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+ L FS +V++LQ+E RL
Sbjct: 119 FRFLEERQRFSRLVVMLQKEVGERL 143
>gi|401685071|ref|ZP_10816941.1| dimethyladenosine transferase [Streptococcus sp. BS35b]
gi|418974338|ref|ZP_13522250.1| dimethyladenosine transferase [Streptococcus oralis SK1074]
gi|383349242|gb|EID27188.1| dimethyladenosine transferase [Streptococcus oralis SK1074]
gi|400183276|gb|EJO17533.1| dimethyladenosine transferase [Streptococcus sp. BS35b]
Length = 290
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + ++ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQYIKNF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|306824464|ref|ZP_07457810.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|421489445|ref|ZP_15936825.1| dimethyladenosine transferase [Streptococcus oralis SK304]
gi|304433251|gb|EFM36221.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|400365682|gb|EJP18732.1| dimethyladenosine transferase [Streptococcus oralis SK304]
Length = 290
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + ++ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQYIQNF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|150020142|ref|YP_001305496.1| dimethyladenosine transferase [Thermosipho melanesiensis BI429]
gi|149792663|gb|ABR30111.1| dimethyladenosine transferase [Thermosipho melanesiensis BI429]
Length = 258
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 90/146 (61%), Gaps = 14/146 (9%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++ N+ I ++ A + E D+VLEIGPG G+LT L+ GA ++A+E D+ +
Sbjct: 16 KGLGQNFLTNTHIAKKIVERADINENDVVLEIGPGAGTLTEFLVLTGAKIIAVEIDKRLK 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ ERF D ++++ DF+K F+ GF KVVANIP++I+ ++K+
Sbjct: 76 PIL-ERFNKYDNIEIIFVDFLK----------FDVSVLPKGF-KVVANIPYSITGMILKK 123
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEP 262
+L D FS+ VL++Q+E RL+ P
Sbjct: 124 IL-FSD-FSKAVLMVQKEVGDRLLLP 147
>gi|126701147|ref|YP_001090044.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Clostridium
difficile 630]
gi|254977148|ref|ZP_05273620.1| dimethyladenosine transferase [Clostridium difficile QCD-66c26]
gi|255094477|ref|ZP_05323955.1| dimethyladenosine transferase [Clostridium difficile CIP 107932]
gi|255316228|ref|ZP_05357811.1| dimethyladenosine transferase [Clostridium difficile QCD-76w55]
gi|255518890|ref|ZP_05386566.1| dimethyladenosine transferase [Clostridium difficile QCD-97b34]
gi|255652069|ref|ZP_05398971.1| dimethyladenosine transferase [Clostridium difficile QCD-37x79]
gi|260685043|ref|YP_003216328.1| dimethyladenosine transferase [Clostridium difficile CD196]
gi|260688701|ref|YP_003219835.1| dimethyladenosine transferase [Clostridium difficile R20291]
gi|306521805|ref|ZP_07408152.1| dimethyladenosine transferase [Clostridium difficile QCD-32g58]
gi|384362717|ref|YP_006200569.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium difficile BI1]
gi|118600854|sp|Q181C1.1|RSMA_CLOD6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|115252584|emb|CAJ70427.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) [Clostridium
difficile 630]
gi|260211206|emb|CBA66699.1| dimethyladenosine transferase [Clostridium difficile CD196]
gi|260214718|emb|CBE07385.1| dimethyladenosine transferase [Clostridium difficile R20291]
Length = 289
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 106/180 (58%), Gaps = 9/180 (5%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + K F KSLGQ+++++S I D++ + A + GD ++E+GPG G+LT +
Sbjct: 7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D++++ ++++ + +D +V+ +D +K I+ + + K + G K
Sbjct: 67 KIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQDILKVDIQELV-----KDKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ P T +Y ++I V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAIPG--TKDYGALSIAVQYY 179
>gi|145349952|ref|XP_001419390.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579621|gb|ABO97683.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 320
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 81/150 (54%), Gaps = 18/150 (12%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N I + + A V+ D+VLEIGPGTG+LT LL+A V+A+E D MV
Sbjct: 43 KSFGQHILKNPAIVNAIVDKAGVKSTDVVLEIGPGTGNLTTKLLDACKKVIAVEFDPRMV 102
Query: 177 GLVRERF----ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
+R R A +L+++Q DF+K + F VAN+P+ IS+
Sbjct: 103 LELRRRVQSDPAQNSRLEIIQGDFLKVDL--------------PYFDVCVANVPYQISSP 148
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLVEP 262
+I +LL +F L+ Q E A+RLV P
Sbjct: 149 LIFKLLAHRPMFRSATLMFQREFAMRLVAP 178
>gi|255102733|ref|ZP_05331710.1| dimethyladenosine transferase [Clostridium difficile QCD-63q42]
gi|255308554|ref|ZP_05352725.1| dimethyladenosine transferase [Clostridium difficile ATCC 43255]
gi|423090624|ref|ZP_17078913.1| dimethyladenosine transferase [Clostridium difficile 70-100-2010]
gi|357556328|gb|EHJ37943.1| dimethyladenosine transferase [Clostridium difficile 70-100-2010]
Length = 289
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 106/180 (58%), Gaps = 9/180 (5%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + K F KSLGQ+++++S I D++ + A + GD ++E+GPG G+LT +
Sbjct: 7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D++++ ++++ + +D +V+ +D +K I+ + + K + G K
Sbjct: 67 KIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQDILKVDIQELV-----KDKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ P T +Y ++I V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAIPG--TKDYGALSIAVQYY 179
>gi|452972522|gb|EME72352.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sonorensis L12]
Length = 292
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 101/178 (56%), Gaps = 7/178 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + LN G +KSLGQ++++++ I D++ A V E V+EIGPG G+LT L
Sbjct: 11 TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAEVTERTGVIEIGPGIGALTEQLAKRA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + + D + V+ +D +K I++ M F+ VVA
Sbjct: 71 KKVVAFEIDQRLLPILEDTLSPYDNVTVIHQDVLKADIKAVMDEQFQ----GCDEVMVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
N+P+ ++T +I +LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 127 NLPYYVTTPIIMKLLEEHLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYT 182
>gi|423080853|ref|ZP_17069470.1| dimethyladenosine transferase [Clostridium difficile 002-P50-2011]
gi|423087255|ref|ZP_17075644.1| dimethyladenosine transferase [Clostridium difficile 050-P50-2011]
gi|357545193|gb|EHJ27173.1| dimethyladenosine transferase [Clostridium difficile 050-P50-2011]
gi|357552342|gb|EHJ34116.1| dimethyladenosine transferase [Clostridium difficile 002-P50-2011]
Length = 289
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 106/180 (58%), Gaps = 9/180 (5%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + K F KSLGQ+++++S I D++ + A + GD ++E+GPG G+LT +
Sbjct: 7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D++++ ++++ + +D +V+ +D +K I+ + + K + G K
Sbjct: 67 KIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQDILKVDIQELV-----KDKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ P T +Y ++I V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAIPG--TKDYGALSIAVQYY 179
>gi|427737776|ref|YP_007057320.1| dimethyladenosine transferase [Rivularia sp. PCC 7116]
gi|427372817|gb|AFY56773.1| dimethyladenosine transferase [Rivularia sp. PCC 7116]
Length = 272
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 9/158 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PR+ QH++ + + + + AAA ++E D VLEIGPG G LT LL +VLA+E D+
Sbjct: 3 PRRVFAQHWLQSDKALNSIIAAAELKETDRVLEIGPGKGVLTRQLLEKVNSVLAVEIDRD 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +L EDF+ + S ++ F + ++ + KVVANIP+NI+ +I
Sbjct: 63 LCKLLVQKLGEKENFLLLNEDFLNVDL-SVLVKDFSKFQNQN---KVVANIPYNITGPII 118
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTS 267
++LL P + +VLL+Q+E A R+V RTS
Sbjct: 119 ERLLGKIGSPNPQPYDSIVLLVQKEVAERIVAKPGRTS 156
>gi|113474554|ref|YP_720615.1| dimethyladenosine transferase [Trichodesmium erythraeum IMS101]
gi|110165602|gb|ABG50142.1| dimethyladenosine transferase [Trichodesmium erythraeum IMS101]
Length = 281
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 15/153 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++L+ + +++ AA + E D +LEIGPGTG LT+ LL A+V+A+E D+
Sbjct: 5 PRKRFAQHWLLSDKALNKIIQAAELSESDRILEIGPGTGVLTHRLLPLAASVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA---KVVANIPFNIST 231
+ + ++F + +LQ D + + +++ GF KVVANIP+NI+
Sbjct: 65 LCQKLVKKFGRVKNFLLLQGDILSLDLETNLAQFI-------GFQNPHKVVANIPYNITG 117
Query: 232 DVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
++++LL P+ + + +VLLLQ+E A R+
Sbjct: 118 LILEKLLGTISQPLTNTYDLIVLLLQKEVADRI 150
>gi|363889336|ref|ZP_09316699.1| dimethyladenosine transferase [Eubacteriaceae bacterium CM5]
gi|363893052|ref|ZP_09320192.1| dimethyladenosine transferase [Eubacteriaceae bacterium CM2]
gi|402838006|ref|ZP_10886521.1| dimethyladenosine transferase [Eubacteriaceae bacterium OBRC8]
gi|361961783|gb|EHL14962.1| dimethyladenosine transferase [Eubacteriaceae bacterium CM2]
gi|361966759|gb|EHL19646.1| dimethyladenosine transferase [Eubacteriaceae bacterium CM5]
gi|402274437|gb|EJU23621.1| dimethyladenosine transferase [Eubacteriaceae bacterium OBRC8]
Length = 288
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 97/163 (59%), Gaps = 6/163 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ++++N I +++ AA + + D+VLEIG G G+LT+ L V+A+E D++++
Sbjct: 24 KSLGQNFLINENILNEIIEAADITKDDVVLEIGTGIGTLTSKLCERAKRVVAVEIDKNLL 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E ++ + ++ +D +K I + SL +K KVVAN+P+ I+T +I +
Sbjct: 84 PILNETLSAYQNIDIINKDILKTDINEELKSLGINQK-----VKVVANLPYYITTPIIMK 138
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
+L S +VL+LQ+E A R + T +Y ++I V +Y
Sbjct: 139 ILEENVNVSVMVLMLQKEVANR-INAQHSTKDYGSLSIAVQYY 180
>gi|406659843|ref|ZP_11067981.1| dimethyladenosine transferase [Streptococcus iniae 9117]
gi|405577952|gb|EKB52100.1| dimethyladenosine transferase [Streptococcus iniae 9117]
Length = 290
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 100/181 (55%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + S K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQIKSF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|307243374|ref|ZP_07525533.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM
17678]
gi|306493244|gb|EFM65238.1| dimethyladenosine transferase [Peptostreptococcus stomatis DSM
17678]
Length = 292
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 101 YHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
+ AT+ + G KSLGQ+++++ I D++ A A + GD ++E+GPG G+LT +
Sbjct: 8 HSATMDLVKKHGFKFTKSLGQNFLIDDNIVDKIVAGAGIGPGDKIIEVGPGIGTLTREMA 67
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
+ ++A+E D++++ ++ + D +K++ ED +K IR + G K
Sbjct: 68 SRAEALMAVEIDKNLIPILADTLGDYDNVKIVNEDIIKADIRGLI-----DENLGGGPVK 122
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T +I + L +++V+++Q+E A R+ +P + ++ +++ V +Y
Sbjct: 123 LVANLPYYITTPIIMRFLEENINVTDIVVMVQKEVAERMNAQPGGK--DFGALSVAVQYY 180
>gi|303229693|ref|ZP_07316481.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a]
gi|302515818|gb|EFL57772.1| dimethyladenosine transferase [Veillonella atypica ACS-134-V-Col7a]
Length = 284
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 96/165 (58%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA +QEG+ VLEIGPG G+LT L +GA V AIE D ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTLTQGLAQSGANVTAIELDTRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ A + ++ D +K + S M ++ F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLAQYSNVTIVHGDVLKLDVPSIM--------NNEPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V+++Q+E ALR+V +P T +Y +++ V +Y+
Sbjct: 136 LLESRLPIERLVVMVQKEVALRMVAKPG--TKDYGALSVAVQYYT 178
>gi|167748007|ref|ZP_02420134.1| hypothetical protein ANACAC_02744 [Anaerostipes caccae DSM 14662]
gi|167652584|gb|EDR96713.1| dimethyladenosine transferase [Anaerostipes caccae DSM 14662]
Length = 286
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 94/165 (56%), Gaps = 6/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++S + +++ AA + E D VLEIGPG G++T L V+A+E D ++
Sbjct: 22 QKKFGQNFLIDSHVLEKIIDAANITEDDFVLEIGPGIGTMTQYLSEHAREVMAVEIDHNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A D ++VL ED +K I +K+ KVVAN+P+ I+T +I
Sbjct: 82 IPILKETLAGYDNVEVLNEDILKVDIGK-----IAEKKNQGRPIKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L + + +++Q+E A R+ + T +Y +++ V FY+
Sbjct: 137 GLFEKNVPMNSLTVMVQKEVAQRM-QAGPGTKDYGALSLAVQFYA 180
>gi|331270584|ref|YP_004397076.1| dimethyladenosine transferase [Clostridium botulinum BKT015925]
gi|329127134|gb|AEB77079.1| dimethyladenosine transferase [Clostridium botulinum BKT015925]
Length = 281
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 98/180 (54%), Gaps = 12/180 (6%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
T K + K F KSLGQ+++ + + D + + V E D V+EIGPG G+LT LL
Sbjct: 3 KVTTKEIVQKYNFKFTKSLGQNFLTDQTVLDDIVDGSEVCEEDFVIEIGPGVGTLTKELL 62
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V A+E D +++ +++E D +++ +D +K + L KS K
Sbjct: 63 KKAKKVCAVELDSNLIPILQEELKEFDNFQLIHKDALKIDFK----ELIGDEKS----VK 114
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
VVAN+P+ ++T +I +LL G F + +++Q+E A R+ +P+ + EY ++I V +Y
Sbjct: 115 VVANLPYYVTTPIIARLLKEGYKFKSLTIMIQKEVAERIASQPNCK--EYGALSILVQYY 172
>gi|347520976|ref|YP_004778547.1| dimethyladenosine transferase [Lactococcus garvieae ATCC 49156]
gi|385832339|ref|YP_005870114.1| dimethyladenosine transferase [Lactococcus garvieae Lg2]
gi|343179544|dbj|BAK57883.1| dimethyladenosine transferase [Lactococcus garvieae ATCC 49156]
gi|343181492|dbj|BAK59830.1| dimethyladenosine transferase [Lactococcus garvieae Lg2]
Length = 296
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITATAELSDQVNVIEIGPGIGSLTQYLLEEAAEVMAFEIDKTL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D +++ D +K +R H+ + K+ KVVAN+P+ I+T ++
Sbjct: 87 IPILEETLAPYDNFQLVNADVLKVDMREHIKNF----KNPDLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 143 HLIESKIPFTEFVVMMQKEVADRIAAKPS--TKAYGSLSIAVQYY 185
>gi|168494774|ref|ZP_02718917.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC3059-06]
gi|225855474|ref|YP_002736986.1| dimethyladenosine transferase [Streptococcus pneumoniae JJA]
gi|418074828|ref|ZP_12712076.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11184]
gi|418079429|ref|ZP_12716650.1| dimethyladenosine transferase [Streptococcus pneumoniae 4027-06]
gi|418090350|ref|ZP_12727502.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43265]
gi|418099314|ref|ZP_12736409.1| dimethyladenosine transferase [Streptococcus pneumoniae 6901-05]
gi|418106117|ref|ZP_12743171.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44500]
gi|418115503|ref|ZP_12752488.1| dimethyladenosine transferase [Streptococcus pneumoniae 5787-06]
gi|418117661|ref|ZP_12754629.1| dimethyladenosine transferase [Streptococcus pneumoniae 6963-05]
gi|418135761|ref|ZP_12772613.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11426]
gi|418174403|ref|ZP_12811013.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41277]
gi|418183527|ref|ZP_12820083.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43380]
gi|418217435|ref|ZP_12844113.1| dimethyladenosine transferase [Streptococcus pneumoniae
Netherlands15B-37]
gi|419432374|ref|ZP_13972502.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP05]
gi|419434604|ref|ZP_13974720.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40183]
gi|419441176|ref|ZP_13981218.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40410]
gi|419465375|ref|ZP_14005265.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04175]
gi|419469786|ref|ZP_14009652.1| dimethyladenosine transferase [Streptococcus pneumoniae GA06083]
gi|419498357|ref|ZP_14038061.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47522]
gi|419535468|ref|ZP_14074965.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17457]
gi|421281976|ref|ZP_15732771.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04672]
gi|421310388|ref|ZP_15761012.1| dimethyladenosine transferase [Streptococcus pneumoniae GA62681]
gi|254807889|sp|C1CGR5.1|RSMA_STRZJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|183575340|gb|EDT95868.1| dimethyladenosine transferase [Streptococcus pneumoniae CDC3059-06]
gi|225722617|gb|ACO18470.1| dimethyladenosine transferase [Streptococcus pneumoniae JJA]
gi|353745944|gb|EHD26609.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11184]
gi|353746049|gb|EHD26713.1| dimethyladenosine transferase [Streptococcus pneumoniae 4027-06]
gi|353760271|gb|EHD40849.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43265]
gi|353768084|gb|EHD48610.1| dimethyladenosine transferase [Streptococcus pneumoniae 6901-05]
gi|353774989|gb|EHD55473.1| dimethyladenosine transferase [Streptococcus pneumoniae GA44500]
gi|353784005|gb|EHD64427.1| dimethyladenosine transferase [Streptococcus pneumoniae 5787-06]
gi|353787776|gb|EHD68177.1| dimethyladenosine transferase [Streptococcus pneumoniae 6963-05]
gi|353836900|gb|EHE16987.1| dimethyladenosine transferase [Streptococcus pneumoniae GA41277]
gi|353847531|gb|EHE27553.1| dimethyladenosine transferase [Streptococcus pneumoniae GA43380]
gi|353869923|gb|EHE49802.1| dimethyladenosine transferase [Streptococcus pneumoniae
Netherlands15B-37]
gi|353900383|gb|EHE75939.1| dimethyladenosine transferase [Streptococcus pneumoniae GA11426]
gi|379536249|gb|EHZ01439.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04175]
gi|379543315|gb|EHZ08466.1| dimethyladenosine transferase [Streptococcus pneumoniae GA06083]
gi|379562669|gb|EHZ27679.1| dimethyladenosine transferase [Streptococcus pneumoniae GA17457]
gi|379575308|gb|EHZ40241.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40183]
gi|379576461|gb|EHZ41386.1| dimethyladenosine transferase [Streptococcus pneumoniae GA40410]
gi|379598250|gb|EHZ63043.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47522]
gi|379627750|gb|EHZ92360.1| dimethyladenosine transferase [Streptococcus pneumoniae EU-NP05]
gi|395879482|gb|EJG90541.1| dimethyladenosine transferase [Streptococcus pneumoniae GA04672]
gi|395908573|gb|EJH19451.1| dimethyladenosine transferase [Streptococcus pneumoniae GA62681]
Length = 290
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLMPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|297743975|emb|CBI36945.3| unnamed protein product [Vitis vinifera]
Length = 284
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + + ++ D++LEIGPGTG+LT LL AG +V+A+E D MV
Sbjct: 29 KSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAGKSVIAVEVDPRMV 88
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ RF ++LKV+Q D ++C + F VANIP+ IS+ +
Sbjct: 89 LELQRRFQGTPLSNRLKVIQGDVLRCDL--------------PYFDICVANIPYQISSPL 134
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL +F V++ Q E A+RLV
Sbjct: 135 TFKLLAHRPVFRCAVIMFQREFAMRLV 161
>gi|420144739|ref|ZP_14652227.1| Ribosomal RNA small subunit methyltransferase A [Lactococcus
garvieae IPLA 31405]
gi|391856191|gb|EIT66740.1| Ribosomal RNA small subunit methyltransferase A [Lactococcus
garvieae IPLA 31405]
Length = 296
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITATAELSDQINVIEIGPGIGSLTQYLLEEAAEVMAFEIDKTL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D +++ D +K +R H+ + K+ KVVAN+P+ I+T ++
Sbjct: 87 IPILEETLAPYDNFQLVNADVLKVDMREHIKNF----KNPDLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 143 HLIESKIPFTEFVVMMQKEVADRIAAKPS--TKAYGSLSIAVQYY 185
>gi|428779714|ref|YP_007171500.1| dimethyladenosine transferase [Dactylococcopsis salina PCC 8305]
gi|428693993|gb|AFZ50143.1| dimethyladenosine transferase [Dactylococcopsis salina PCC 8305]
Length = 281
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 91/151 (60%), Gaps = 17/151 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + DQ+ AA+ D VLEIG GTG LT LL + +TV+A+E D+
Sbjct: 7 PRKQFAQHWLKSEKALDQIIETAALNSEDAVLEIGAGTGILTRRLLLSASTVVAVEIDRD 66
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ ++++F + + L +L+ DF+K + S + S KVVANIP+NI+ ++
Sbjct: 67 LIKKLKQKFQTEEHLLLLEGDFLKLDLASLV---------SPTPRKVVANIPYNITAPIL 117
Query: 235 KQLLPMGDI------FSEVVLLLQEETALRL 259
++LL G I + ++VLL+Q+E A R+
Sbjct: 118 EKLL--GSIAHPEQKYEKIVLLVQKEIADRI 146
>gi|39996962|ref|NP_952913.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Geobacter
sulfurreducens PCA]
gi|62900555|sp|Q74C12.1|RSMA_GEOSL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|39983850|gb|AAR35240.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase
[Geobacter sulfurreducens PCA]
Length = 276
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 85/144 (59%), Gaps = 6/144 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK+LGQ+++ + + ++AA + G+ +LEIGPG G+LT+ L ++A+E D +
Sbjct: 9 RKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEQAGQLVAVELDDRL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V L+R FA + +++ D + +R + + + KV AN+P+NIST V+
Sbjct: 69 VPLLRGSFAGNPSVTIIEGDILDLDLRETL------GRYGTPPWKVAANLPYNISTPVLF 122
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
+LL D+FS +VL+LQ+E RL
Sbjct: 123 RLLDARDLFSRLVLMLQKEVGNRL 146
>gi|311070689|ref|YP_003975612.1| dimethyladenosine transferase [Bacillus atrophaeus 1942]
gi|419823447|ref|ZP_14346994.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus atrophaeus C89]
gi|310871206|gb|ADP34681.1| dimethyladenosine transferase [Bacillus atrophaeus 1942]
gi|388472420|gb|EIM09196.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus atrophaeus C89]
Length = 292
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRAKQVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K +R ++ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVR----TVIEEQFHDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 139 KLLEENLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 182
>gi|357239499|ref|ZP_09126834.1| dimethyladenosine transferase [Streptococcus ictaluri 707-05]
gi|356752068|gb|EHI69198.1| dimethyladenosine transferase [Streptococcus ictaluri 707-05]
Length = 290
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 99/182 (54%), Gaps = 7/182 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L
Sbjct: 5 DYSVTRSVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++++ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQIINQDILKADLQTQIKAF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKVYGSLSIAVQY 178
Query: 279 YS 280
Y+
Sbjct: 179 YT 180
>gi|418963551|ref|ZP_13515388.1| dimethyladenosine transferase [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383343147|gb|EID21342.1| dimethyladenosine transferase [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 291
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ ED +K +++ + + +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVRVVNEDILKSDLQARIKEF----ANPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|253681083|ref|ZP_04861886.1| dimethyladenosine transferase [Clostridium botulinum D str. 1873]
gi|253562932|gb|EES92378.1| dimethyladenosine transferase [Clostridium botulinum D str. 1873]
Length = 281
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 99/180 (55%), Gaps = 12/180 (6%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
T K + K F KSLGQ+++ + + D + + V E D V+EIGPG G+LT LL
Sbjct: 3 KVTTKEIVQKYNFKFTKSLGQNFLTDQTVLDDIVIGSEVCEEDFVIEIGPGVGTLTKELL 62
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V A+E D +++ +++E + +++ +D +K + + L KS K
Sbjct: 63 KKAKKVCAVELDSNLIPILQEELKEFNNFQLIHKDALKINFK----ELIGDEKS----VK 114
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
VVAN+P+ ++T +I +LL G F + +++Q+E A R+ EP+ + EY ++I V +Y
Sbjct: 115 VVANLPYYVTTPIIARLLKEGYNFKSLTIMIQKEVAERIASEPNCK--EYGALSILVQYY 172
>gi|255283478|ref|ZP_05348033.1| dimethyladenosine transferase [Bryantella formatexigens DSM 14469]
gi|255265935|gb|EET59140.1| dimethyladenosine transferase [Marvinbryantia formatexigens DSM
14469]
Length = 298
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 95/165 (57%), Gaps = 8/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + D++ AAA + + D VLEIGPG G++T L A VLA+E D+ +
Sbjct: 22 QKKFGQNFLIDGHVLDKIIAAADITKEDFVLEIGPGIGTMTQYLSEAAGRVLAVEIDKML 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A + +++L ED +K I +L E + KVVAN+P+ I+T +I
Sbjct: 82 IPILHETLAGYENVEILNEDILKVDIA----ALVEEKNGGKPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL + +++Q+E A R+ +P + +Y +++ V +Y
Sbjct: 137 GLLEQHVPVKSITVMVQKEVAQRMQAQPG--SKDYGALSLAVQYY 179
>gi|407717887|ref|YP_006795292.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Leuconostoc
carnosum JB16]
gi|407241643|gb|AFT81293.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc carnosum JB16]
Length = 295
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 7/174 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K LGQ+++ + I + A + D VLEIGPG GSLT L A V+
Sbjct: 17 LNEYGLHAKKKLGQNFLTDLNILHGIVDTAEITNDDFVLEIGPGIGSLTEQLARAAKKVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D MV ++ + D +KV++ D +K + + + F + + KVVAN+P+
Sbjct: 77 ALEIDSQMVAVLSDTLQPYDNVKVIENDVLKVDLNELIAAEFGQNAT----VKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
I+T ++ QLL + +V+++Q E A RL P T EY + + + +++
Sbjct: 133 YITTPILMQLLRANISWDNIVVMMQREVADRLNAMPG--TKEYGVLTLTLQYFA 184
>gi|348026759|ref|YP_004766564.1| ribosomal RNA small subunit methyltransferase A [Megasphaera
elsdenii DSM 20460]
gi|341822813|emb|CCC73737.1| ribosomal RNA small subunit methyltransferase A [Megasphaera
elsdenii DSM 20460]
Length = 283
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ + D +A AA + EGD VLEIGPG G+LT L GA V A+E D H++
Sbjct: 25 KKLGQNFLIRHAVVDDIADAAGIGEGDPVLEIGPGIGTLTQALAETGAAVTAVELDDHLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + D ++V+ D ++ I M + F V AN+P+ I+T +I +
Sbjct: 85 PVLDKTLEHYDNVRVVHGDILRIDIEEVM--------NHQPFT-VCANLPYYITTPIIMK 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V+++Q+E A R+V EP + Y +++ V +Y+
Sbjct: 136 LLEQKLPIKRIVVMVQKEVAERMVAEPGHKI--YGALSVSVQYYT 178
>gi|358068305|ref|ZP_09154772.1| dimethyladenosine transferase [Johnsonella ignava ATCC 51276]
gi|356693564|gb|EHI55238.1| dimethyladenosine transferase [Johnsonella ignava ATCC 51276]
Length = 303
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 95/163 (58%), Gaps = 6/163 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQ+++++S I D + AAA ++E D VLEIGPG GSLT L + V+AIE D+ ++
Sbjct: 23 KKYGQNFLIDSNILDMIVAAADIKEDDTVLEIGPGLGSLTQRLASKAKKVVAIEIDKLLI 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E + + + VL ED +K I + + + +G KVVAN+P+ I+T ++ +
Sbjct: 83 PILNETLSEYNNIVVLNEDILKTDIGEII-----DKYAEAGSIKVVANLPYYITTPIVMK 137
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
LL + +++Q+E A R+ + + +Y ++I V +Y
Sbjct: 138 LLEGHYPVESITVMVQKEVAERM-QAVAGSKDYGALSIAVAYY 179
>gi|416355243|ref|ZP_11681793.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium botulinum C str. Stockholm]
gi|338195249|gb|EGO87555.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium botulinum C str. Stockholm]
Length = 281
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 99/180 (55%), Gaps = 12/180 (6%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
T K + K F KSLGQ+++ + + D + + V E D V+EIGPG G+LT LL
Sbjct: 3 KVTTKEIVQKYNFKFTKSLGQNFLTDQTVLDDIVIGSEVCEEDFVIEIGPGVGTLTKELL 62
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V A+E D +++ +++E + +++ +D +K + + L KS K
Sbjct: 63 KKAKKVCAVELDSNLIPILQEELKEFNNFQLIHKDALKINFK----ELIGDEKS----VK 114
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
VVAN+P+ ++T +I +LL G F + +++Q+E A R+ EP+ + EY ++I V +Y
Sbjct: 115 VVANLPYYVTTPIIARLLKEGYNFKSLTIMIQKEVAERIASEPNCK--EYGALSILVQYY 172
>gi|125718907|ref|YP_001036040.1| dimethyladenosine transferase [Streptococcus sanguinis SK36]
gi|166221709|sp|A3CQN5.1|RSMA_STRSV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|125498824|gb|ABN45490.1| Dimethyladenosine transferase, putative [Streptococcus sanguinis
SK36]
Length = 290
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K ++ ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVNLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|313893343|ref|ZP_07826917.1| dimethyladenosine transferase [Veillonella sp. oral taxon 158 str.
F0412]
gi|313442112|gb|EFR60530.1| dimethyladenosine transferase [Veillonella sp. oral taxon 158 str.
F0412]
Length = 284
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA + G+ VLE+GPG G+LT L +GA V AIE D+ ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVHAAELTPGEPVLEVGPGIGTLTQGLAQSGADVTAIELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ AS D ++++ D +K + + M + F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLASYDNVRIVHGDVLKLDVPTIM--------NHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V+++Q+E ALR+V +P T +Y +++ V +Y+
Sbjct: 136 LLESKLPIERLVVMVQKEVALRMVAKPG--TKDYGALSVAVQYYT 178
>gi|302669432|ref|YP_003829392.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus
B316]
gi|302393905|gb|ADL32810.1| dimethyladenosine transferase KsgA [Butyrivibrio proteoclasticus
B316]
Length = 292
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 99/178 (55%), Gaps = 8/178 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +K GQ+++++S + D + +AA V + D VLEIGPG GSLT L +
Sbjct: 10 TKEVLAKFGMSAKKKFGQNFLIDSGVLDGIVSAAGVTKDDCVLEIGPGIGSLTQYLAESA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D+ ++ ++ + + D + V+ ED +K I + + + + KVVA
Sbjct: 70 GKVVAVEIDKTLIPVLADTLSEYDNVTVINEDVLKVDIEAIV-----KEYNGGNPIKVVA 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I +L G + +++Q+E A R+ + P +Y +++ V +Y+
Sbjct: 125 NLPYYITTPIIMKLFESGAPIESITVMVQKEVADRMAMGPG--NKDYGSLSLAVGYYA 180
>gi|225026666|ref|ZP_03715858.1| hypothetical protein EUBHAL_00918 [Eubacterium hallii DSM 3353]
gi|224956036|gb|EEG37245.1| dimethyladenosine transferase [Eubacterium hallii DSM 3353]
Length = 293
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 95/180 (52%), Gaps = 8/180 (4%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
TI L G +K GQ++++++ + D++ AA + + D VLEIGPG G++T L
Sbjct: 15 QETIAVLQRYGFNFQKKYGQNFLIDTHVLDKIIGAAEIGKDDFVLEIGPGIGTMTQYLAE 74
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
A V+A+E D ++ ++ + D + VL ED +K IR K+ KV
Sbjct: 75 AAREVVAVEIDTKLIPILEDTLKEYDNVTVLNEDILKVDIRK-----IAEEKNGGKPIKV 129
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
VAN+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 130 VANLPYYITTPIIMGLFESEVPLDSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 187
>gi|386587086|ref|YP_006083488.1| dimethyladenosine transferase [Streptococcus suis D12]
gi|353739232|gb|AER20240.1| dimethyladenosine transferase [Streptococcus suis D12]
Length = 290
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 100/181 (55%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D ++ ++ + D + V+ +D +K +++H+ + K+ +
Sbjct: 65 AESAAEVMAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTHIQNF----KNPALPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIKSKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|428297940|ref|YP_007136246.1| dimethyladenosine transferase [Calothrix sp. PCC 6303]
gi|428234484|gb|AFZ00274.1| dimethyladenosine transferase [Calothrix sp. PCC 6303]
Length = 285
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 9/150 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
R++L QH++ + + D +A AA E D VLEIGPGTG LT LL ++A+E D ++
Sbjct: 11 RRALAQHWLKSEKALDAIARAAECTECDRVLEIGPGTGILTRRLLPLVGALVAVEIDSNL 70
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ + D +LQ DF++ + + +L+ F + + + KVVANIP+NI+ +I+
Sbjct: 71 CKLLVKGLGEKDNFLLLQSDFLEVEL-ATLLAGFPKFQKPN---KVVANIPYNITGPIIE 126
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLV 260
+LL P + + +VLL+Q+E A RLV
Sbjct: 127 KLLGRISNPNPEPYESIVLLIQKEVAERLV 156
>gi|300362465|ref|ZP_07058641.1| dimethyladenosine transferase [Lactobacillus gasseri JV-V03]
gi|300353456|gb|EFJ69328.1| dimethyladenosine transferase [Lactobacillus gasseri JV-V03]
Length = 296
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLAAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ ++ K++ +D +K + + KS K+VAN+P+
Sbjct: 85 PEILKNELPQKVAGEELSNRFKLVMKDVLKANFTKDSDGFLDLNKS----VKIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L+ FS + L++Q+E A RLV +T EY P+ I V
Sbjct: 141 ITTPIIFNLIKSNLAFSSLTLMMQKEVAERLVAKP-KTKEYGPLTIAV 187
>gi|238019586|ref|ZP_04600012.1| hypothetical protein VEIDISOL_01455 [Veillonella dispar ATCC 17748]
gi|237863784|gb|EEP65074.1| hypothetical protein VEIDISOL_01455 [Veillonella dispar ATCC 17748]
Length = 284
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA + G+ VLE+GPG G+LT L +GA V AIE D+ ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVHAAELTPGEPVLEVGPGIGTLTQGLAQSGADVTAIELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ AS D ++++ D +K + + M + F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLASYDNVRIVHGDVLKLDVPTIM--------NHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V+++Q+E ALR+V +P T +Y +++ V +Y+
Sbjct: 136 LLESKLPIERLVVMVQKEVALRMVAKPG--TKDYGALSVAVQYYT 178
>gi|363896909|ref|ZP_09323457.1| dimethyladenosine transferase [Oribacterium sp. ACB7]
gi|361960097|gb|EHL13355.1| dimethyladenosine transferase [Oribacterium sp. ACB7]
Length = 288
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 99/181 (54%), Gaps = 6/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI L +K GQ+++++S + + + + + + + D+++EIGPG G+LT L
Sbjct: 6 DSKETIAVLQKTNFQFKKQFGQNFLIDSSVLEHILSFSEINKDDLIIEIGPGIGTLTEAL 65
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
V+AIE D ++ ++ E ++ D K++ D +K LSL E K S
Sbjct: 66 CERAGFVVAIEIDDKLIPILEENLSAKDNFKLIHGDALKV----DYLSLLEEHKEFSS-V 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ LL + +++Q+E ALR+ + + T +Y +++ V +Y
Sbjct: 121 KVVANLPYYITTPILMDLLEKKLPLKSITVMVQKEVALRM-KAAPGTKDYGALSLAVQYY 179
Query: 280 S 280
S
Sbjct: 180 S 180
>gi|357236972|ref|ZP_09124315.1| dimethyladenosine transferase [Streptococcus criceti HS-6]
gi|356884954|gb|EHI75154.1| dimethyladenosine transferase [Streptococcus criceti HS-6]
Length = 290
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A V + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEVDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ ++ ++ + D ++V+ +D +K +++ + S K+
Sbjct: 65 AENAAEVMAFEIDERLIPILADTLRDFDNVQVVNQDILKADLQTQIQSF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVIMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|332638745|ref|ZP_08417608.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Weissella cibaria KACC 11862]
Length = 298
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 93/172 (54%), Gaps = 6/172 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G +KSLGQ+++ + I + AA VQ+ D V+EIGPG G+LT L A V+
Sbjct: 17 MNQFGINTKKSLGQNFLTDINILKNIVAAGDVQKTDNVVEIGPGIGALTEQLARAAKQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ A D + ++ D +K + FE + K+VAN+P+
Sbjct: 77 AFEIDDRLIPVLDHTMAPYDNVTIVHNDILKVDLEKEFAKQFE---DVTAPLKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
I+T ++ Q+L G F +V+++Q+E A RL EP T +Y + + V +
Sbjct: 134 YITTPILMQVLQSGIHFDNIVVMMQKEVADRLSAEPG--TKDYGSLTLAVQY 183
>gi|392428035|ref|YP_006469046.1| dimethyladenosine transferase [Streptococcus intermedius JTH08]
gi|419777166|ref|ZP_14303084.1| dimethyladenosine transferase [Streptococcus intermedius SK54]
gi|383845377|gb|EID82781.1| dimethyladenosine transferase [Streptococcus intermedius SK54]
gi|391757181|dbj|BAM22798.1| dimethyladenosine transferase [Streptococcus intermedius JTH08]
Length = 291
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 100/181 (55%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ ++ ++ + + +K++ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDERLIPILADTLRDFENVKIINEDILKSDLQARIKEF----TNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ +L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMRLIESGISFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|423071410|ref|ZP_17060184.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
intermedius F0413]
gi|355363884|gb|EHG11619.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
intermedius F0413]
Length = 291
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 100/181 (55%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTLKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ ++ ++ + + +K++ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDERLIPILADTLRDFENVKIINEDILKSDLQARIKEF----TNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ +L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMRLIESGISFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|297797749|ref|XP_002866759.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297312594|gb|EFH43018.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 376
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 85/152 (55%), Gaps = 17/152 (11%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
G F KS GQH + N+ I D + + V+ D VLEIGPGTG+LT LL A V+A+E
Sbjct: 53 GLFLCKSKGQHLLTNTRILDAIVRCSDVRPTDTVLEIGPGTGNLTMKLLEAAQDVVAVEL 112
Query: 172 DQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
D+ MV ++R+R + +L ++Q+D +K F VVANIP+N
Sbjct: 113 DKRMVEILRKRVSDHGFAHKLTIIQKDVLKTDF--------------PQFDLVVANIPYN 158
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
IS+ ++ +L+ + F LLLQ+E + RL+
Sbjct: 159 ISSPLVAKLVYGSNTFRSATLLLQKEFSRRLL 190
>gi|282848961|ref|ZP_06258350.1| dimethyladenosine transferase [Veillonella parvula ATCC 17745]
gi|282581236|gb|EFB86630.1| dimethyladenosine transferase [Veillonella parvula ATCC 17745]
Length = 284
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 97/165 (58%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA + G+ VLE+GPG G+LT L +GA V AIE D+ ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVHAAELTAGEPVLEVGPGIGTLTQGLAQSGADVTAIELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ AS D ++++ D +K + + M + F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLASYDNVRIIHGDVLKLDVPTIM--------NHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V+++Q+E ALR++ +P T +Y +++ V +Y+
Sbjct: 136 LLESKLPIERLVVMVQKEVALRMIAKPG--TKDYGALSVAVQYYT 178
>gi|333397617|ref|ZP_08479430.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc gelidum KCTC 3527]
gi|406599478|ref|YP_006744824.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Leuconostoc
gelidum JB7]
gi|406371013|gb|AFS39938.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc gelidum JB7]
Length = 295
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN+ G +K GQ+++ + ++ + A + D V+EIGPG GSLT + A VL
Sbjct: 17 LNAYGLHAKKKFGQNFLTDLDVLHGIVDTADITNEDYVIEIGPGIGSLTEQIARAAKKVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
AIE D MV ++ E D +KV+ D ++ ++R + F + KVVAN+P+
Sbjct: 77 AIEIDTQMVKVLGETLKDYDNVKVIAGDILEMNLRQIITEEF----GENAHVKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG 281
I+T ++ QLL + +V+++Q E A RL + T Y + + + +++
Sbjct: 133 YITTPILMQLLRTNITWDNIVVMMQREVADRL-NADVGTKAYGVLTLTIQYFAN 185
>gi|443635067|ref|ZP_21119237.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
gi|443345120|gb|ELS59187.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
Length = 292
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 182
>gi|422822520|ref|ZP_16870713.1| dimethyladenosine transferase [Streptococcus sanguinis SK353]
gi|422847622|ref|ZP_16894305.1| dimethyladenosine transferase [Streptococcus sanguinis SK72]
gi|324989790|gb|EGC21733.1| dimethyladenosine transferase [Streptococcus sanguinis SK353]
gi|325686620|gb|EGD28646.1| dimethyladenosine transferase [Streptococcus sanguinis SK72]
Length = 290
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|158334916|ref|YP_001516088.1| dimethyladenosine transferase [Acaryochloris marina MBIC11017]
gi|189028799|sp|B0CC89.1|RSMA_ACAM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|158305157|gb|ABW26774.1| dimethyladenosine transferase [Acaryochloris marina MBIC11017]
Length = 269
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 14/154 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + Q+ AAA +Q D +LEIGPG G LT LL +V+++E D+
Sbjct: 4 PRKRFAQHWLKSQAVLRQIIAAAKIQGCDRILEIGPGRGVLTRELLAQAQSVVSVELDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R F + +L+ DF+ + + + KVVANIP+NI++ ++
Sbjct: 64 LCKSLRHTFNDQENFTLLELDFLNLDVAAELTEPLPN--------KVVANIPYNITSPIL 115
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EP 262
+LL P ++ VVLL+Q+E A RLV EP
Sbjct: 116 SKLLGRIDAPAQPVYETVVLLIQKEVADRLVAEP 149
>gi|225437553|ref|XP_002276165.1| PREDICTED: probable dimethyladenosine transferase-like [Vitis
vinifera]
Length = 350
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + + ++ D++LEIGPGTG+LT LL AG +V+A+E D MV
Sbjct: 29 KSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAGKSVIAVEVDPRMV 88
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ RF ++LKV+Q D ++C + F VANIP+ IS+ +
Sbjct: 89 LELQRRFQGTPLSNRLKVIQGDVLRCDL--------------PYFDICVANIPYQISSPL 134
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL +F V++ Q E A+RLV
Sbjct: 135 TFKLLAHRPVFRCAVIMFQREFAMRLV 161
>gi|147864926|emb|CAN81538.1| hypothetical protein VITISV_011853 [Vitis vinifera]
Length = 336
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + + ++ D++LEIGPGTG+LT LL AG +V+A+E D MV
Sbjct: 29 KSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAGKSVIAVEVDPRMV 88
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ RF ++LKV+Q D ++C + F VANIP+ IS+ +
Sbjct: 89 LELQRRFQGTPLSNRLKVIQGDVLRCDLPY--------------FDICVANIPYQISSPL 134
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL +F V++ Q E A+RLV
Sbjct: 135 TFKLLAHRPVFRCAVIMFQREFAMRLV 161
>gi|406909010|gb|EKD49361.1| hypothetical protein ACD_63C00170G0001 [uncultured bacterium]
Length = 273
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 91/153 (59%), Gaps = 9/153 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P + LGQ+++++ + ++L A+ ++ GD ++E+GPG G LT+ +L + V A+E D+
Sbjct: 18 PIRGLGQNFLIDERVIEKLVRASNIKRGDFIVEVGPGLGVLTDAVLRRTSNVFAVEIDRG 77
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
V ++ERF +LK++ D + I L + G+ KVV+N+PFNI+T VI
Sbjct: 78 FVEFLKERFGD-QKLKIVHRDVLNLDIAGLAL-------KNYGY-KVVSNLPFNIATAVI 128
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
L SE++++LQ+E A R+VE ++S
Sbjct: 129 IFFLKNKISPSEIIVVLQKEVAERIVEKEGKSS 161
>gi|296131650|ref|YP_003638897.1| dimethyladenosine transferase [Thermincola potens JR]
gi|296030228|gb|ADG80996.1| dimethyladenosine transferase [Thermincola potens JR]
Length = 292
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 101/169 (59%), Gaps = 4/169 (2%)
Query: 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
RF +K+LGQ+++++ + + A +++ D+V+EIGPG G+LT L + V+A+E D
Sbjct: 20 RF-KKALGQNFLIDRNVVTNICKTADLKKSDLVVEIGPGIGTLTEQLAHYAGHVIAVELD 78
Query: 173 QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
+ ++G++ E + + ++Q D +K ++ + + + G KVVAN+P+ I+T
Sbjct: 79 KDLIGILEENLRAYGNVTIIQNDILKVNLDKVVGDFRKEHDLAEGPYKVVANLPYYITTP 138
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
V+ L+ SE+V+++Q+E A R+ +P + +Y +++ V +Y+
Sbjct: 139 VLMYLMENNFNISEIVVMIQKEVAERIAAQPG--SKDYGALSLAVRYYT 185
>gi|401679504|ref|ZP_10811431.1| dimethyladenosine transferase [Veillonella sp. ACP1]
gi|400219438|gb|EJO50306.1| dimethyladenosine transferase [Veillonella sp. ACP1]
Length = 284
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA +QEG+ VLEIGPG G+LT L +GA V AIE D ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTLTQGLAQSGANVTAIELDTRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ A + ++ D +K + S M F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLAQYSNVTIVHGDVLKLDVPSIM--------HHEPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V+++Q+E ALR+V +P T +Y +++ V +Y+
Sbjct: 136 LLESRLPIERLVVMVQKEVALRMVAKPG--TKDYGALSVAVQYYT 178
>gi|418087664|ref|ZP_12724831.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47033]
gi|353757065|gb|EHD37662.1| dimethyladenosine transferase [Streptococcus pneumoniae GA47033]
Length = 290
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 100/181 (55%), Gaps = 8/181 (4%)
Query: 101 YHATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
Y++ KA+ + F +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 YYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 TERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|303231892|ref|ZP_07318601.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6]
gi|429760016|ref|ZP_19292508.1| dimethyladenosine transferase [Veillonella atypica KON]
gi|302513421|gb|EFL55454.1| dimethyladenosine transferase [Veillonella atypica ACS-049-V-Sch6]
gi|429178728|gb|EKY20000.1| dimethyladenosine transferase [Veillonella atypica KON]
Length = 284
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA +QEG+ VLEIGPG G+LT L +GA V AIE D ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVKAADLQEGEPVLEIGPGIGTLTQGLAQSGANVTAIELDTRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ A + ++ D +K + S M F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLAQYSNVTIVHGDVLKLDVPSIM--------HHEPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V+++Q+E ALR+V +P T +Y +++ V +Y+
Sbjct: 136 LLESRLPIERLVVMVQKEVALRMVAKPG--TKDYGALSVAVQYYT 178
>gi|424786979|ref|ZP_18213750.1| dimethyladenosine transferase [Streptococcus intermedius BA1]
gi|422114230|gb|EKU17937.1| dimethyladenosine transferase [Streptococcus intermedius BA1]
Length = 291
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ ++ ++ + + +K++ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDERLIPILADTLRDFENVKIINEDILKSDLQARIKEF----TNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGISFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|315222376|ref|ZP_07864281.1| dimethyladenosine transferase [Streptococcus anginosus F0211]
gi|315188537|gb|EFU22247.1| dimethyladenosine transferase [Streptococcus anginosus F0211]
Length = 291
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ ED +K +++ + + +
Sbjct: 65 AENTAEVMAFEIDDRLVPILADTLRDFDNVRVVNEDILKSDLQARIKEF----ANPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|322386716|ref|ZP_08060340.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100]
gi|417921435|ref|ZP_12564926.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100]
gi|321268998|gb|EFX51934.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100]
gi|342834118|gb|EGU68393.1| dimethyladenosine transferase [Streptococcus cristatus ATCC 51100]
Length = 290
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|359457348|ref|ZP_09245911.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Acaryochloris sp. CCMEE 5410]
Length = 269
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 14/154 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + Q+ AAA +Q D +LEIGPG G LT LL +V+++E D+
Sbjct: 4 PRKRFAQHWLKSQAVLRQIIAAAKIQGCDRILEIGPGRGVLTRELLAQAQSVVSVELDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R F + +L+ DF+ + + + KVVANIP+NI++ ++
Sbjct: 64 LCKSLRHTFNDQENFTLLELDFLNLDVAAELAEPLPN--------KVVANIPYNITSPIL 115
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EP 262
+LL P ++ VVLL+Q+E A RLV EP
Sbjct: 116 SKLLGRIDAPAQPVYETVVLLIQKEVADRLVAEP 149
>gi|55821771|ref|YP_140213.1| dimethyladenosine transferase [Streptococcus thermophilus LMG
18311]
gi|62900469|sp|Q5M2L6.1|RSMA_STRT2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|55737756|gb|AAV61398.1| dimethyladenosine transferase (rRNA methylation) [Streptococcus
thermophilus LMG 18311]
Length = 290
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|428776521|ref|YP_007168308.1| dimethyladenosine transferase [Halothece sp. PCC 7418]
gi|428690800|gb|AFZ44094.1| dimethyladenosine transferase [Halothece sp. PCC 7418]
Length = 276
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 17/151 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K QH++ + + ++ AA + D+VLEIGPGTG LT LL V AIE DQ
Sbjct: 3 PQKRFAQHWLKSEKALQEIITAAQLSPEDVVLEIGPGTGILTKELLKTVKKVSAIELDQA 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ ++E+F D L ++Q DF+K + S + R K + KVVANIP+NI+ ++
Sbjct: 63 LMKHLQEKFRQKDNLILIQGDFLKLELESIL-----REKPN----KVVANIPYNITGPIL 113
Query: 235 KQLLPMGDI------FSEVVLLLQEETALRL 259
++LL G I + ++LL+Q+E A R+
Sbjct: 114 EKLL--GSIAEPNRKYDRIILLVQKEIAERI 142
>gi|268318776|ref|YP_003292432.1| dimethyladenosine transferase [Lactobacillus johnsonii FI9785]
gi|262397151|emb|CAX66165.1| dimethyladenosine transferase [Lactobacillus johnsonii FI9785]
Length = 296
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLPAIKGIVEAADIQRGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K++ +D +K + + KS K+VAN+P+
Sbjct: 85 PEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VKIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L+ FS + L++Q+E A RLV +T EY P++I V
Sbjct: 141 ITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAV 187
>gi|158321677|ref|YP_001514184.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs]
gi|166987688|sp|A8MK56.1|RSMA_ALKOO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|158141876|gb|ABW20188.1| dimethyladenosine transferase [Alkaliphilus oremlandii OhILAs]
Length = 287
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 93/164 (56%), Gaps = 6/164 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I D + A V EGD ++E+GPG GSLT + +VLA+E D+ ++
Sbjct: 23 KSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGSLTQNIAERADSVLAVEIDKTLI 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++V+ ED +K + + F R KV+AN+P+ ++T +I +
Sbjct: 83 PILKETLGAYPNVEVINEDVLKLDLHKLIEEKFPGRN-----VKVIANLPYYVTTPIIMK 137
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ + T +Y ++I V +YS
Sbjct: 138 FLEEKVPVKSLTIMIQKEVADRM-QAGPGTKDYGALSIAVQYYS 180
>gi|282896422|ref|ZP_06304443.1| 16S rRNA dimethylase [Raphidiopsis brookii D9]
gi|281198710|gb|EFA73590.1| 16S rRNA dimethylase [Raphidiopsis brookii D9]
Length = 281
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 13/152 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K QH++ + + + + AA Q D +LEIGPGTG LT LL ++LA+E D+
Sbjct: 4 PQKQFAQHWLRSEKALNSIVKAAECQANDRILEIGPGTGILTKRLLPLVDSLLAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL--FERRKSSSGFAKVVANIPFNISTD 232
+ L+ ++ + + +LQ DF+ I S + + F+R+ KVVANIP+NI+
Sbjct: 64 LCELLAKKLGARENFLLLQGDFLTLGIASQLTAFPKFQRQN------KVVANIPYNITGP 117
Query: 233 VIKQLL-----PMGDIFSEVVLLLQEETALRL 259
+I++LL P F +VLL+Q+E A RL
Sbjct: 118 IIEKLLGTIADPNPQPFDSIVLLIQKEVAQRL 149
>gi|186685005|ref|YP_001868201.1| dimethyladenosine transferase [Nostoc punctiforme PCC 73102]
gi|226732604|sp|B2J0A6.1|RSMA_NOSP7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|186467457|gb|ACC83258.1| dimethyladenosine transferase [Nostoc punctiforme PCC 73102]
Length = 286
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 15/156 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQE------GDIVLEIGPGTGSLTNVLLNAGATVLA 168
PRK QH++ + + D + AA E GD +LEIGPGTG LT LL +++A
Sbjct: 4 PRKVFAQHWLKSEKALDAIIKAAECTESDRSPKGDCILEIGPGTGILTRRLLPLVQSLIA 63
Query: 169 IEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+E D+ + L+ ++ + +LQ DF+ + S++++ +K + KVVANIP+N
Sbjct: 64 VEIDRDLCQLLSKQLGKTENFLLLQGDFLTLDLPSYLVAFPNFQKPN----KVVANIPYN 119
Query: 229 ISTDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
I+ +I++LL P + F +VLL+Q+E A RL
Sbjct: 120 ITGPIIEKLLGTIANPNPEPFDSIVLLVQKEVAERL 155
>gi|268318145|ref|YP_003291864.1| dimethyladenosine transferase [Rhodothermus marinus DSM 4252]
gi|262335679|gb|ACY49476.1| dimethyladenosine transferase [Rhodothermus marinus DSM 4252]
Length = 266
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 10/149 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK LGQH++++ I ++ AA D V+EIGPGTG+LT +LL + AIE D
Sbjct: 7 PRKRLGQHFLVDPNIARKIVAALQAAPEDPVVEIGPGTGALTGLLLERYPHLTAIEIDPR 66
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
V ++ R+ +D V QED +K + E + G VV N+P+ I++ ++
Sbjct: 67 AVAELKARWPELD---VRQEDVLKVN-------WAELAEEKGGRLHVVGNLPYYITSPIL 116
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPS 263
LL + +E VL++Q E A RLV P
Sbjct: 117 FALLDAREALAEAVLMMQREVAERLVAPP 145
>gi|168333630|ref|ZP_02691890.1| dimethyladenosine transferase [Epulopiscium sp. 'N.t. morphotype
B']
Length = 283
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 100/177 (56%), Gaps = 12/177 (6%)
Query: 106 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
KA+ SK F +K GQ+++++ + ++ +AA + + D VLEIGPG GS+T LL
Sbjct: 11 KAVLSKYPFILKKKYGQNFLIDEHVLTKIISAANISKNDCVLEIGPGIGSVTQELLEHAQ 70
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V+A+E D+ ++ ++ +F S D ++ EDF+K L L E K + KVVAN
Sbjct: 71 EVIAVEIDKELIPILNNQFGSYDNFALINEDFLK-------LDLKEVLKGXTNI-KVVAN 122
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
+P+ I+T +I LL F + +++Q+E A R+ P T EY I+ + +Y+
Sbjct: 123 LPYYITTPIIMALLESELPFINITVMVQKEVADRITALPG--TKEYGSISASIAYYA 177
>gi|55823689|ref|YP_142130.1| dimethyladenosine transferase [Streptococcus thermophilus CNRZ1066]
gi|386087400|ref|YP_006003274.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
thermophilus ND03]
gi|387910495|ref|YP_006340801.1| dimethyladenosine transferase [Streptococcus thermophilus
MN-ZLW-002]
gi|62900468|sp|Q5LY12.1|RSMA_STRT1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|55739674|gb|AAV63315.1| dimethyladenosine transferase (rRNA methylation) [Streptococcus
thermophilus CNRZ1066]
gi|312279113|gb|ADQ63770.1| Ribosomal RNA small subunit methyltransferase A [Streptococcus
thermophilus ND03]
gi|387575430|gb|AFJ84136.1| dimethyladenosine transferase [Streptococcus thermophilus
MN-ZLW-002]
Length = 290
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|224143306|ref|XP_002324910.1| predicted protein [Populus trichocarpa]
gi|222866344|gb|EEF03475.1| predicted protein [Populus trichocarpa]
Length = 386
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 17/150 (11%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
F KS GQH + N I D + +++ D VLEIGPGTG+LT LL+ + V+A+E D+
Sbjct: 55 FLYKSKGQHLLTNQRILDSIVRKSSINPTDTVLEIGPGTGNLTLKLLDVASKVVAVEIDK 114
Query: 174 HMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
MVG++ +R D+L V++ED +K F VVANIP+ IS
Sbjct: 115 RMVGVLNKRVKEHGFEDKLSVIREDALKAEF--------------PKFDLVVANIPYGIS 160
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
+ ++ +L+ + F LLLQ+E A RL+
Sbjct: 161 SPLVAKLVYGANPFRSATLLLQKEFARRLL 190
>gi|116628487|ref|YP_821106.1| dimethyladenosine transferase [Streptococcus thermophilus LMD-9]
gi|122266918|sp|Q03IR2.1|RSMA_STRTD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|116101764|gb|ABJ66910.1| dimethyladenosine transferase [Streptococcus thermophilus LMD-9]
Length = 290
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|294793453|ref|ZP_06758590.1| dimethyladenosine transferase [Veillonella sp. 3_1_44]
gi|416998879|ref|ZP_11939548.1| dimethyladenosine transferase [Veillonella parvula ACS-068-V-Sch12]
gi|294455023|gb|EFG23395.1| dimethyladenosine transferase [Veillonella sp. 3_1_44]
gi|333977032|gb|EGL77891.1| dimethyladenosine transferase [Veillonella parvula ACS-068-V-Sch12]
Length = 284
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 97/165 (58%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA + G+ VLE+GPG G+LT L +GA V AIE D+ ++
Sbjct: 25 KKLGQNFLIKRGIVDEIVHAAELTVGEPVLEVGPGIGTLTQGLAQSGADVTAIELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ AS D ++++ D +K + + M + F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLASYDNVRIIHGDVLKLDVPTIM--------NHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V+++Q+E ALR++ +P T +Y +++ V +Y+
Sbjct: 136 LLESKLPIERLVVMVQKEVALRMIAKPG--TKDYGALSVAVQYYT 178
>gi|420162329|ref|ZP_14669088.1| dimethyladenosine transferase [Weissella koreensis KCTC 3621]
gi|394744362|gb|EJF33316.1| dimethyladenosine transferase [Weissella koreensis KCTC 3621]
Length = 297
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 97/172 (56%), Gaps = 6/172 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G +KSLGQ+++ + I + A V + D V+EIGPG G+LT L A V+
Sbjct: 18 MNQYGINTKKSLGQNFLTDLNILKNIVLAGNVTKDDNVIEIGPGIGALTEQLARAAKEVV 77
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D+ ++ ++ + + D +K++ +D +K + S ++ E S K+VAN+P+
Sbjct: 78 AFEIDERLISVLGDTLSPYDNIKIINQDILKVDLMS---AVQENFTDPSAPLKIVANLPY 134
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
I+T ++ Q+L G +V+++Q+E A RL EP T EY +++ V +
Sbjct: 135 YITTPILMQILESGIEVDAIVVMMQKEVADRLAAEPG--TKEYGSLSLTVQY 184
>gi|374338791|ref|YP_005095508.1| Dimethyladenosine transferase [Streptococcus macedonicus ACA-DC
198]
gi|372284908|emb|CCF03219.1| Dimethyladenosine transferase [Streptococcus macedonicus ACA-DC
198]
Length = 290
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILDDTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|42518291|ref|NP_964221.1| dimethyladenosine transferase [Lactobacillus johnsonii NCC 533]
gi|385825157|ref|YP_005861499.1| dimethyladenosine transferase [Lactobacillus johnsonii DPC 6026]
gi|62900557|sp|Q74LI0.1|RSMA_LACJO RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|41582575|gb|AAS08187.1| dimethyladenosine transferase [Lactobacillus johnsonii NCC 533]
gi|329666601|gb|AEB92549.1| dimethyladenosine transferase [Lactobacillus johnsonii DPC 6026]
Length = 296
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K++ +D +K + + KS K+VAN+P+
Sbjct: 85 PEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VKIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L+ FS + L++Q+E A RLV +T EY P++I V
Sbjct: 141 ITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAV 187
>gi|395207947|ref|ZP_10397323.1| dimethyladenosine transferase [Oribacterium sp. ACB8]
gi|394706361|gb|EJF13877.1| dimethyladenosine transferase [Oribacterium sp. ACB8]
Length = 302
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 6/182 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI L +K GQ+++++S + + + + + + + D+V+EIGPG G+LT L
Sbjct: 19 DSKETIAVLQKTNFQFKKQFGQNFLIDSSVLEHILSFSEINKNDLVIEIGPGIGTLTEAL 78
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
V+AIE D ++ ++ E +S D K++ D +K + LSL K S
Sbjct: 79 CERAGFVVAIEIDDKLIPILEETLSSKDNFKLIHGDALKV----NYLSLLAEHKEFSSI- 133
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ LL + +++Q+E ALR+ + + T +Y + + V +Y
Sbjct: 134 KVVANLPYYITTPILMDLLEKRLPLKSITVMVQKEVALRM-KAAPGTKDYGALTLAVQYY 192
Query: 280 SG 281
S
Sbjct: 193 SN 194
>gi|386345507|ref|YP_006041671.1| dimethyladenosine transferase [Streptococcus thermophilus JIM 8232]
gi|339278968|emb|CCC20716.1| dimethyladenosine transferase (S-adenosylmethionine-6-N ,
N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Streptococcus
thermophilus JIM 8232]
Length = 290
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|312863719|ref|ZP_07723957.1| dimethyladenosine transferase [Streptococcus vestibularis F0396]
gi|322515990|ref|ZP_08068928.1| dimethyladenosine transferase [Streptococcus vestibularis ATCC
49124]
gi|311101255|gb|EFQ59460.1| dimethyladenosine transferase [Streptococcus vestibularis F0396]
gi|322125525|gb|EFX96866.1| dimethyladenosine transferase [Streptococcus vestibularis ATCC
49124]
Length = 290
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ +V ++ + D +KV+ ED +K +++ + ++ +
Sbjct: 65 AENAAEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFEEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|296329543|ref|ZP_06872029.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305672740|ref|YP_003864411.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296153286|gb|EFG94149.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305410983|gb|ADM36101.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 292
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V E V+EIGPG G+LT + V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQIAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 182
>gi|339634696|ref|YP_004726337.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Weissella koreensis KACC 15510]
gi|338854492|gb|AEJ23658.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Weissella koreensis KACC 15510]
Length = 297
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 97/172 (56%), Gaps = 6/172 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G +KSLGQ+++ + I + A V + D V+EIGPG G+LT L A V+
Sbjct: 18 MNQYGINTKKSLGQNFLTDLNILKNIVLAGNVTKDDNVIEIGPGIGALTEQLARAAKEVV 77
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D+ ++ ++ + + D +K++ +D +K + S ++ E S K+VAN+P+
Sbjct: 78 AFEIDERLISVLGDTLSPYDNIKIINQDILKVDLMS---AVQENFTDPSAPLKIVANLPY 134
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
I+T ++ Q+L G +V+++Q+E A RL EP T EY +++ V +
Sbjct: 135 YITTPILMQILESGIEVDAIVVMMQKEVADRLAAEPG--TKEYGSLSLTVQY 184
>gi|383753330|ref|YP_005432233.1| putative ribosomal RNA small subunit methyltransferase A
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365382|dbj|BAL82210.1| putative ribosomal RNA small subunit methyltransferase A
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 287
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 95/165 (57%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ I + AA ++EGD VLEIGPG G+LT L AGA V A+E D+ +
Sbjct: 29 KKLGQNFLIDASIVQGIVDAAEIEEGDRVLEIGPGIGTLTQGLAEAGADVTAVELDKKLP 88
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D ++++ D +K +I M F KV AN+P+ I+T ++
Sbjct: 89 AVLAETLKGYDNVRIVPGDILKVNIPEIM--------GDKPF-KVAANLPYYITTPILMA 139
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL + +V ++Q+E ALR+V +P + +Y +++ V +Y+
Sbjct: 140 LLERHLPITHMVTMVQKEVALRMVAKPGGK--DYGALSVAVQYYT 182
>gi|363898890|ref|ZP_09325408.1| dimethyladenosine transferase [Oribacterium sp. ACB1]
gi|361960020|gb|EHL13279.1| dimethyladenosine transferase [Oribacterium sp. ACB1]
Length = 289
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 98/182 (53%), Gaps = 6/182 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI L +K GQ+++++S + + + + + + + D+V+EIGPG G+LT L
Sbjct: 6 DSKETIAVLQKTNFQFKKQFGQNFLIDSSVLEHILSFSEINKNDLVIEIGPGIGTLTEAL 65
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
V+AIE D ++ ++ E +S D K++ D +K + LSL K S
Sbjct: 66 CERAGFVVAIEIDDKLIPILEETLSSKDNFKLIHGDALKV----NYLSLLAEHKEFSSI- 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
KVVAN+P+ I+T ++ LL + +++Q+E ALR+ + + T +Y + + V +Y
Sbjct: 121 KVVANLPYYITTPILMDLLEKRLPLKSITVMVQKEVALRM-KAAPGTKDYGALTLAVQYY 179
Query: 280 SG 281
S
Sbjct: 180 SN 181
>gi|157149731|ref|YP_001449514.1| dimethyladenosine transferase [Streptococcus gordonii str. Challis
substr. CH1]
gi|189028823|sp|A8AUQ4.1|RSMA_STRGC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|157074525|gb|ABV09208.1| dimethyladenosine transferase [Streptococcus gordonii str. Challis
substr. CH1]
Length = 290
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|21909726|ref|NP_663994.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS315]
gi|28895107|ref|NP_801457.1| dimethyladenosine transferase [Streptococcus pyogenes SSI-1]
gi|342179306|sp|P0DF12.1|RSMA_STRP3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|342179307|sp|P0DF13.1|RSMA_STRPQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|21903910|gb|AAM78797.1| putative dimethyladenosine transferase [Streptococcus pyogenes
MGAS315]
gi|28810352|dbj|BAC63290.1| putative dimethyladenosine transferase [Streptococcus pyogenes
SSI-1]
Length = 290
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|320547549|ref|ZP_08041834.1| dimethyladenosine transferase [Streptococcus equinus ATCC 9812]
gi|320447624|gb|EFW88382.1| dimethyladenosine transferase [Streptococcus equinus ATCC 9812]
Length = 290
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|171779142|ref|ZP_02920113.1| hypothetical protein STRINF_00988 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282198|gb|EDT47625.1| dimethyladenosine transferase [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 290
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|306832261|ref|ZP_07465415.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304425700|gb|EFM28818.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 290
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|409912391|ref|YP_006890856.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase
[Geobacter sulfurreducens KN400]
gi|298505979|gb|ADI84702.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase
[Geobacter sulfurreducens KN400]
Length = 276
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 85/144 (59%), Gaps = 6/144 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK+LGQ+++ + + ++AA + G+ +LEIGPG G+LT+ L ++A+E D +
Sbjct: 9 RKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAELAGQLVAVELDNRL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V L+R F+ + +++ D + +R + + + KV AN+P+NIST V+
Sbjct: 69 VPLLRGSFSGNPSVTIIEGDILDLDLRETL------GRYGTPPWKVAANLPYNISTPVLF 122
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
+LL D+FS +VL+LQ+E RL
Sbjct: 123 RLLDARDLFSRLVLMLQKEVGNRL 146
>gi|422759887|ref|ZP_16813649.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412722|gb|EFY03630.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 290
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|336065069|ref|YP_004559928.1| dimethyladenosine transferase [Streptococcus pasteurianus ATCC
43144]
gi|334283269|dbj|BAK30842.1| dimethyladenosine transferase [Streptococcus pasteurianus ATCC
43144]
Length = 290
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|148264355|ref|YP_001231061.1| dimethyladenosine transferase [Geobacter uraniireducens Rf4]
gi|146397855|gb|ABQ26488.1| dimethyladenosine transferase [Geobacter uraniireducens Rf4]
Length = 275
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 87/145 (60%), Gaps = 6/145 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS+GQ+++++ + ++ A + D +LE+GPG G+LT +L+ A VLA+E D+ +
Sbjct: 7 KKSMGQNFLVDRNVLTRIVDAVNISAEDRILEVGPGKGALTALLVERAAQVLAVELDRQL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V + FA ++ +Q D +K ++ ++ + SG KV AN+P+NIS+ V+
Sbjct: 67 VPFLAREFAPQKNVEFVQGDILKVNLSELLMDRW------SGAWKVAANLPYNISSQVLF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV 260
+ L +FS ++L+LQ+E RL+
Sbjct: 121 KFLDNPKLFSLLILMLQKEVGDRLI 145
>gi|50913600|ref|YP_059572.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10394]
gi|50902674|gb|AAT86389.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10394]
Length = 298
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 Y 279
Y
Sbjct: 187 Y 187
>gi|288906214|ref|YP_003431436.1| dimethyladenosine transferase [Streptococcus gallolyticus UCN34]
gi|325979187|ref|YP_004288903.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386338656|ref|YP_006034825.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732940|emb|CBI14519.1| dimethyladenosine transferase [Streptococcus gallolyticus UCN34]
gi|325179115|emb|CBZ49159.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334281292|dbj|BAK28866.1| dimethyladenosine transferase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 290
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLHDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|94993613|ref|YP_601711.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS10750]
gi|118600904|sp|Q1J8J4.1|RSMA_STRPF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|94547121|gb|ABF37167.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10750]
Length = 298
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 Y 279
Y
Sbjct: 187 Y 187
>gi|71902882|ref|YP_279685.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS6180]
gi|251783338|ref|YP_002997643.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|408402423|ref|YP_006860387.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|118600903|sp|Q1JIN6.1|RSMA_STRPD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|119365851|sp|Q48VC6.1|RSMA_STRPM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|71801977|gb|AAX71330.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS6180]
gi|94543239|gb|ABF33287.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS10270]
gi|242391970|dbj|BAH82429.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|407968652|dbj|BAM61890.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 298
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 Y 279
Y
Sbjct: 187 Y 187
>gi|383479414|ref|YP_005388308.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS15252]
gi|383493339|ref|YP_005411015.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS1882]
gi|378927404|gb|AFC65610.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS15252]
gi|378929067|gb|AFC67484.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS1882]
Length = 290
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|139473080|ref|YP_001127795.1| dimethyladenosine transferase [Streptococcus pyogenes str.
Manfredo]
gi|62900490|sp|Q5XDX4.2|RSMA_STRP6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|166221708|sp|A2RCH2.1|RSMA_STRPG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|134271326|emb|CAM29544.1| dimethyladenosine transferase [Streptococcus pyogenes str.
Manfredo]
Length = 290
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|19745394|ref|NP_606530.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS8232]
gi|209558786|ref|YP_002285258.1| dimethyladenosine transferase [Streptococcus pyogenes NZ131]
gi|306828033|ref|ZP_07461298.1| dimethyladenosine transferase [Streptococcus pyogenes ATCC 10782]
gi|410495728|ref|YP_006905574.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|27151569|sp|Q8P2N8.1|RSMA_STRP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|19747502|gb|AAL97029.1| putative dimethyladenosine transferase [Streptococcus pyogenes
MGAS8232]
gi|209539987|gb|ACI60563.1| Dimethyladenosine transferase [Streptococcus pyogenes NZ131]
gi|304429749|gb|EFM32793.1| dimethyladenosine transferase [Streptococcus pyogenes ATCC 10782]
gi|410440888|emb|CCI63516.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 290
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|392330032|ref|ZP_10274648.1| dimethyladenosine transferase [Streptococcus canis FSL Z3-227]
gi|391419904|gb|EIQ82715.1| dimethyladenosine transferase [Streptococcus canis FSL Z3-227]
Length = 290
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|295694738|ref|YP_003587976.1| dimethyladenosine transferase [Kyrpidia tusciae DSM 2912]
gi|295410340|gb|ADG04832.1| dimethyladenosine transferase [Kyrpidia tusciae DSM 2912]
Length = 293
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 8/167 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSLGQH++++ I +++ AAA + + VLEIGPG G+LT L A VLA+EKD+
Sbjct: 22 PKKSLGQHFLVDDRILERIVAAADLSGREAVLEIGPGLGALTLRLAQAAWRVLAVEKDRS 81
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ E ++V D ++ + F R +VVAN+P+ ++T V+
Sbjct: 82 LQPVLSEVLRDFGNVQVCWGDVLEVDLPRMCEEAFGPRT-----VRVVANLPYYVTTPVM 136
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
+LL G + +VL++Q E A RL P +T Y + + V +++
Sbjct: 137 MKLLEEGPVMDRMVLMVQREVADRLTARPGTKT--YGALTVAVQWFA 181
>gi|94987854|ref|YP_595955.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS9429]
gi|94991737|ref|YP_599836.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS2096]
gi|118600901|sp|Q1JDL6.1|RSMA_STRPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|118600902|sp|Q1JNI8.1|RSMA_STRPC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|94541362|gb|ABF31411.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS9429]
gi|94545245|gb|ABF35292.1| Dimethyladenosine transferase [Streptococcus pyogenes MGAS2096]
Length = 298
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 Y 279
Y
Sbjct: 187 Y 187
>gi|433448289|ref|ZP_20411262.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Weissella ceti NC36]
gi|429539920|gb|ELA07953.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Weissella ceti NC36]
Length = 298
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G +KSLGQ+++ + I + AA V E D V+EIGPG G+LT L VL
Sbjct: 17 MNEFGINTKKSLGQNFLTDINILTNIVAAGDVTENDNVIEIGPGIGALTEQLARNAKQVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ A D + V+ ED ++ ++ + ER S K+VAN+P+
Sbjct: 77 AFEIDDRLIPVLAHTLAPYDNVTVVHEDILQVNLAKEIQ---ERFDDPSAPLKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
I+T ++ Q+L G F +V+++Q+E A R+
Sbjct: 134 YITTPILMQVLQSGVQFDSIVVMMQKEVADRI 165
>gi|365926609|ref|ZP_09449372.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420264877|ref|ZP_14767477.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394429630|gb|EJF02054.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 298
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I ++ AA V E D V+E+GPG G+LT + A VLA+E D+ +
Sbjct: 26 KKSLGQNFLTDINILHKIVAAGDVSENDDVIEVGPGIGALTEQIAKAAHQVLALEIDEQL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + V+ +D +K ++ + + F+ + KVVAN+P+ I++ +I
Sbjct: 86 IPVLAETLGQYDNVTVVLQDILKADLKELIRNNFDGKHP----IKVVANLPYYITSPIIM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL FS +V+++Q+E A RL
Sbjct: 142 HLLDTKIAFSAIVVMMQKEVANRL 165
>gi|15674442|ref|NP_268616.1| dimethyladenosine transferase [Streptococcus pyogenes SF370]
gi|71910036|ref|YP_281586.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS5005]
gi|410679912|ref|YP_006932314.1| dimethyladenosine transferase [Streptococcus pyogenes A20]
gi|417857546|ref|ZP_12502605.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus pyogenes HKU QMH11M0907901]
gi|27151597|sp|Q9A1I0.1|RSMA_STRP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|13621537|gb|AAK33337.1| putative dimethyladenosine transferase [Streptococcus pyogenes M1
GAS]
gi|71852818|gb|AAZ50841.1| dimethyladenosine transferase [Streptococcus pyogenes MGAS5005]
gi|387934501|gb|EIK42614.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus pyogenes HKU QMH11M0907901]
gi|395454705|dbj|BAM31044.1| dimethyladenosine transferase [Streptococcus pyogenes M1 476]
gi|409692501|gb|AFV37361.1| dimethyladenosine transferase [Streptococcus pyogenes A20]
Length = 290
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|350264142|ref|YP_004875449.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597029|gb|AEP84817.1| dimethyladenosine transferase [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 292
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V E V+EIGPG G+LT + V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTEKTGVIEIGPGIGALTEQIAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 182
>gi|357636017|ref|ZP_09133892.1| dimethyladenosine transferase [Streptococcus macacae NCTC 11558]
gi|357584471|gb|EHJ51674.1| dimethyladenosine transferase [Streptococcus macacae NCTC 11558]
Length = 290
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +K GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILDRHGFTFKKIFGQNFLTDTNILQKIVDTAEIDKNTNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ R K S A
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQT-------RIKEFSNPA 117
Query: 220 ---KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIF 275
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIA 175
Query: 276 VNFY 279
V +Y
Sbjct: 176 VQYY 179
>gi|116628883|ref|YP_814055.1| dimethyladenosine transferase [Lactobacillus gasseri ATCC 33323]
gi|420147807|ref|ZP_14655082.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
gasseri CECT 5714]
gi|116094465|gb|ABJ59617.1| dimethyladenosine transferase [Lactobacillus gasseri ATCC 33323]
gi|398400954|gb|EJN54485.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
gasseri CECT 5714]
Length = 298
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 24/174 (13%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 27 KKNLGQNFLVDLAAIKGIVEAADIQSGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 86
Query: 176 VGLVRERFA-SID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF------AKVV 222
+++ ID + K++ +D +K + K S GF K+V
Sbjct: 87 PEILKNELPQKIDGEELNSRFKLVMKDVLKANF----------TKDSDGFLDLNKPVKIV 136
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AN+P+ I+T +I L+ FS + L++Q+E A RLV +T EY P+ I V
Sbjct: 137 ANLPYYITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAIP-KTKEYGPLTIAV 189
>gi|373469368|ref|ZP_09560560.1| dimethyladenosine transferase [Lachnospiraceae bacterium oral taxon
082 str. F0431]
gi|371764542|gb|EHO52939.1| dimethyladenosine transferase [Lachnospiraceae bacterium oral taxon
082 str. F0431]
Length = 294
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 98/168 (58%), Gaps = 6/168 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ A + ++E D+ +EIGPG G+LT L NA V+AIE D+++
Sbjct: 26 QKKFGQNFLIDTHVLDKICAESGLKENDLAIEIGPGIGALTQYLANAAKAVVAIEIDKNL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA--KVVANIPFNISTDV 233
+ ++ E A ++ DF+K + + + E R+ F ++VAN+P+ I+T +
Sbjct: 86 LPILDETLADYKNTSIINADFLKIDLEN---LIDECRQKYGEFENIRIVANLPYYITTPI 142
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG 281
I +L + +++Q+E A R+ + S T +Y +++ V +YS
Sbjct: 143 IMNVLESHTHIDSITVMIQKEVADRM-QASPGTKDYGALSLAVQYYSN 189
>gi|386362090|ref|YP_006071421.1| dimethyladenosine transferase [Streptococcus pyogenes Alab49]
gi|421891804|ref|ZP_16322558.1| Dimethyladenosine transferase [Streptococcus pyogenes NS88.2]
gi|350276499|gb|AEQ23867.1| dimethyladenosine transferase [Streptococcus pyogenes Alab49]
gi|379982452|emb|CCG26280.1| Dimethyladenosine transferase [Streptococcus pyogenes NS88.2]
Length = 290
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|374307434|ref|YP_005053865.1| dimethyladenosine transferase [Filifactor alocis ATCC 35896]
gi|320120297|gb|EFE28598.2| dimethyladenosine transferase [Filifactor alocis ATCC 35896]
Length = 286
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 27/188 (14%)
Query: 103 ATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
T+K + K F KSLGQ++++++ I ++ +A +QE DIV+E+G G G+LT L
Sbjct: 9 VTLKEITKKYGFQFTKSLGQNFLVDTNILQKIVDSADIQEEDIVIEVGTGIGTLTRELAK 68
Query: 162 AGATVLAIEKDQHMVGLVRER--------FASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
V AIE D+ ++ +V+E F ++D L+V+ ED ++ R
Sbjct: 69 RAKKVYAIEIDKKLIPIVKETTSNYNNIDFVNMDFLEVVLEDLIQEKDRK---------- 118
Query: 214 SSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPI 272
KV+ANIP+ I+T +I + L S ++L++Q+E A RL EPS T Y +
Sbjct: 119 -----IKVIANIPYYITTPIIMKCLESSLDISTILLMIQKEVADRLSAEPS--TKAYGSL 171
Query: 273 NIFVNFYS 280
++ V +YS
Sbjct: 172 SVAVQYYS 179
>gi|317473695|ref|ZP_07932982.1| dimethyladenosine transferase [Anaerostipes sp. 3_2_56FAA]
gi|316898816|gb|EFV20843.1| dimethyladenosine transferase [Anaerostipes sp. 3_2_56FAA]
Length = 286
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 93/165 (56%), Gaps = 6/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++S + +++ AA + + D VLEIGPG G++T L V+A+E D ++
Sbjct: 22 QKKFGQNFLIDSHVLEKIIDAANITKDDFVLEIGPGIGTMTQYLSEHAREVMAVEIDHNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A D ++VL ED +K I +K+ KVVAN+P+ I+T +I
Sbjct: 82 IPILKETLAGYDNVEVLNEDILKVDIGK-----IAEKKNQGRPIKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ + T +Y +++ V FY+
Sbjct: 137 GLFEKNVPMDSLTVMVQKEVAQRM-QAGPGTKDYGALSLAVQFYA 180
>gi|294495698|ref|YP_003542191.1| dimethyladenosine transferase [Methanohalophilus mahii DSM 5219]
gi|292666697|gb|ADE36546.1| dimethyladenosine transferase [Methanohalophilus mahii DSM 5219]
Length = 229
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 86/144 (59%), Gaps = 16/144 (11%)
Query: 118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVG 177
SL QH+++N I D +A AA +Q D+VLEIG G G+LT L++ V+ IE+D +V
Sbjct: 15 SLDQHFLVNEPILDSIAEAADLQIDDVVLEIGGGIGNLTERLVSRAGRVIVIERDSRLVA 74
Query: 178 LVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237
++++RF ++ + +++ D +K + + F KVVAN+P++IS+ + +L
Sbjct: 75 VLQDRFHNVSNIDIIEGDAMKVELPT--------------FNKVVANLPYSISSPITFRL 120
Query: 238 LPMGDIFSEVVLLLQEETALRLVE 261
L G F + +L+ Q E A R+VE
Sbjct: 121 LNHG--FEKGILMYQYEFARRMVE 142
>gi|238852850|ref|ZP_04643255.1| dimethyladenosine transferase [Lactobacillus gasseri 202-4]
gi|282852550|ref|ZP_06261892.1| dimethyladenosine transferase [Lactobacillus gasseri 224-1]
gi|311111301|ref|ZP_07712698.1| dimethyladenosine transferase [Lactobacillus gasseri MV-22]
gi|238834544|gb|EEQ26776.1| dimethyladenosine transferase [Lactobacillus gasseri 202-4]
gi|282556292|gb|EFB61912.1| dimethyladenosine transferase [Lactobacillus gasseri 224-1]
gi|311066455|gb|EFQ46795.1| dimethyladenosine transferase [Lactobacillus gasseri MV-22]
Length = 296
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 24/174 (13%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLAAIKGIVEAADIQSGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFA-SID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF------AKVV 222
+++ ID + K++ +D +K + K S GF K+V
Sbjct: 85 PEILKNELPQKIDGEELNSRFKLVMKDVLKANF----------TKDSDGFLDLNKPVKIV 134
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
AN+P+ I+T +I L+ FS + L++Q+E A RLV +T EY P+ I V
Sbjct: 135 ANLPYYITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAIP-KTKEYGPLTIAV 187
>gi|417927623|ref|ZP_12571011.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|340765497|gb|EGR88023.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
Length = 290
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|427406216|ref|ZP_18896421.1| dimethyladenosine transferase [Selenomonas sp. F0473]
gi|425709057|gb|EKU72096.1| dimethyladenosine transferase [Selenomonas sp. F0473]
Length = 291
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 100/183 (54%), Gaps = 9/183 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T + LN+ G RK LGQ++++++ + + AA + GD VLEIGPG G+LT L
Sbjct: 10 DPAVTRRILNAFGLRARKRLGQNFLVDASVVRGIVDAAELTAGDTVLEIGPGIGTLTQGL 69
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
GA V+A+E D+ + ++ + D + V+ D +K I + + ++ F
Sbjct: 70 AETGARVVAVEVDRKLPAVLAQTLRGYDNVTVVPGDILKIDIPETL-----KLENGERF- 123
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T +I LL +V ++Q+E A+R+ P T +Y +++ V +
Sbjct: 124 KVVANLPYYITTPIIMTLLEQRLPIERLVTMVQKEVAMRMTARPG--TKDYGALSVAVQY 181
Query: 279 YSG 281
++
Sbjct: 182 FTA 184
>gi|291562910|emb|CBL41726.1| dimethyladenosine transferase [butyrate-producing bacterium SS3/4]
Length = 288
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 96/165 (58%), Gaps = 6/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + +++ +AA + + D VLEIGPG G++T L V+A+E D+++
Sbjct: 22 QKKFGQNFLIDTHVLEKIISAAGITKNDCVLEIGPGIGTMTQYLAENAGHVVAVEIDRNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A D + V+ ED ++ I+ +L E KVVAN+P+ I+T +I
Sbjct: 82 IPILKETLADYDNVTVINEDILRVDIK----ALAEEYNGGKPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L G + +++Q+E A R+ E + +Y +++ V +Y+
Sbjct: 137 GLFESGVPIDNITVMVQKEVADRMKE-GPGSKDYGALSLAVQYYA 180
>gi|372324025|ref|ZP_09518614.1| Dimethyladenosine transferase [Oenococcus kitaharae DSM 17330]
gi|366982833|gb|EHN58232.1| Dimethyladenosine transferase [Oenococcus kitaharae DSM 17330]
Length = 292
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 92/162 (56%), Gaps = 10/162 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQ+++++ + Q+A AA+ + D VLEIGPG GSLT L A V+A E D+ ++
Sbjct: 26 KRFGQNFLIDLNVLRQIAELAAINQDDTVLEIGPGIGSLTEQLAKAAGQVVAYEIDKKLI 85
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E A D +KV+ +D +K S+F KS K+VAN+P+ I+T ++
Sbjct: 86 PVLAETLAPYDNVKVINQDILKAD-----FSVFHDAKS----LKIVANLPYYITTPILFY 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
LL F + +++Q+E A RL + + + EY +++ + +
Sbjct: 137 LLGEKLAFKSITVMMQKEVAARL-QAQVGSKEYGELSLAIQY 177
>gi|306834382|ref|ZP_07467499.1| dimethyladenosine transferase [Streptococcus bovis ATCC 700338]
gi|304423555|gb|EFM26704.1| dimethyladenosine transferase [Streptococcus bovis ATCC 700338]
Length = 290
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
K+VAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KIVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|282899539|ref|ZP_06307503.1| 16S rRNA dimethylase [Cylindrospermopsis raciborskii CS-505]
gi|281195418|gb|EFA70351.1| 16S rRNA dimethylase [Cylindrospermopsis raciborskii CS-505]
Length = 281
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 13/152 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K QH++ + + + + AA Q D +LEIGPGTG LT LL ++LA+E D+
Sbjct: 4 PQKQFAQHWLRSEKALNSIVKAAECQVNDRILEIGPGTGILTKRLLPLVDSLLAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL--FERRKSSSGFAKVVANIPFNISTD 232
+ L+ ++ + + +LQ DF+ I S + + F+R+ KVVANIP+NI+
Sbjct: 64 LCELLAKKLGARENFLLLQGDFLTLGIASQLTAFPKFQRQN------KVVANIPYNITGP 117
Query: 233 VIKQLL-----PMGDIFSEVVLLLQEETALRL 259
+I++LL P F +VLL+Q+E A RL
Sbjct: 118 IIEKLLGTIADPNPQPFDSIVLLIQKEVAQRL 149
>gi|427709931|ref|YP_007052308.1| dimethyladenosine transferase [Nostoc sp. PCC 7107]
gi|427362436|gb|AFY45158.1| dimethyladenosine transferase [Nostoc sp. PCC 7107]
Length = 275
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK+ QH++ + ++ + + AA D +LEIGPGTG LT LL ++A+E D+
Sbjct: 4 PRKAFAQHWLKSDKVLNAIVQAAECSTNDRILEIGPGTGILTRQLLPLVQALVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + + +LQ DF+ + +++ + +KS+ KVVANIP+NI+ +I
Sbjct: 64 LCKLLVKQLGTKENFLLLQGDFLALDLETNLAAFPNFQKSN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P F +VLL+Q+E A RL
Sbjct: 120 EKLLGTITNPNPKPFDSIVLLIQKEVAERL 149
>gi|434399399|ref|YP_007133403.1| Ribosomal RNA small subunit methyltransferase A [Stanieria
cyanosphaera PCC 7437]
gi|428270496|gb|AFZ36437.1| Ribosomal RNA small subunit methyltransferase A [Stanieria
cyanosphaera PCC 7437]
Length = 284
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 92/161 (57%), Gaps = 12/161 (7%)
Query: 106 KALNSKGRF-PRKSLGQHYMLNSEIN-DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
K+ S+ +F P K GQH+ L SEI +Q+ AAA + D +LEIGPGTG LT LL
Sbjct: 5 KSTQSRSQFRPNKRFGQHW-LRSEIALNQIVAAAQLTSSDRILEIGPGTGILTRRLLPLV 63
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
+++A+E D+++ + ++ D +LQ DF+K ++ L E S K+VA
Sbjct: 64 ESLVAVEIDRNLCQKLTQKLGKEDNFLLLQGDFLKL----NLTELLESFPSFQQPNKIVA 119
Query: 224 NIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
NIP+NI+ ++++LL P + +VLL+Q+E RL
Sbjct: 120 NIPYNITGPILEKLLGKISQPATTAYQSIVLLVQQEVGERL 160
>gi|379706040|ref|YP_005204499.1| dimethyladenosine transferase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374682739|gb|AEZ63028.1| dimethyladenosine transferase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 290
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I + A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQNIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D +KV+ ED +K ++S + +
Sbjct: 65 AENAAEVMAFEIDDRLIPILDDTLRDFDNVKVINEDILKSDLQSRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|445382869|ref|ZP_21427337.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus thermophilus MTCC 5460]
gi|445395623|ref|ZP_21429068.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus thermophilus MTCC 5461]
gi|444748394|gb|ELW73364.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus thermophilus MTCC 5461]
gi|444748512|gb|ELW73477.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus thermophilus MTCC 5460]
Length = 290
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + FE
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQT-CVKEFENPDLP---I 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|422879744|ref|ZP_16926209.1| dimethyladenosine transferase [Streptococcus sanguinis SK1059]
gi|422929589|ref|ZP_16962530.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 29667]
gi|422932558|ref|ZP_16965489.1| dimethyladenosine transferase [Streptococcus sanguinis SK340]
gi|332365155|gb|EGJ42918.1| dimethyladenosine transferase [Streptococcus sanguinis SK1059]
gi|339614829|gb|EGQ19519.1| dimethyladenosine transferase [Streptococcus sanguinis ATCC 29667]
gi|339618309|gb|EGQ22907.1| dimethyladenosine transferase [Streptococcus sanguinis SK340]
Length = 290
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPV 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKSYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|387880371|ref|YP_006310674.1| dimethyladenosine transferase [Streptococcus parasanguinis FW213]
gi|386793820|gb|AFJ26855.1| dimethyladenosine transferase [Streptococcus parasanguinis FW213]
Length = 291
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G RKS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGSTFRKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|228473773|ref|ZP_04058518.1| dimethyladenosine transferase [Capnocytophaga gingivalis ATCC
33624]
gi|228274794|gb|EEK13617.1| dimethyladenosine transferase [Capnocytophaga gingivalis ATCC
33624]
Length = 258
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 77/147 (52%), Gaps = 10/147 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K LGQH++ N I Q+A + D VLEIGPGTG LT LL V IE D
Sbjct: 8 PKKHLGQHFLTNLSIAQQIANTLSEVGYDRVLEIGPGTGVLTQFLLGKNIEVFVIEIDTE 67
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
V + + F+ + +L EDF+K I SH S FA ++ N P+NIS+ ++
Sbjct: 68 SVTYLEQHFSKLKG-HILGEDFLKFDIVSHF--------SKKPFA-IIGNFPYNISSQIV 117
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVE 261
+LL + D E + Q+E A R+ E
Sbjct: 118 FKLLEIRDFVPEFSGMFQKEVAERICE 144
>gi|75911082|ref|YP_325378.1| dimethyladenosine transferase [Anabaena variabilis ATCC 29413]
gi|122064280|sp|Q3M3F3.1|RSMA_ANAVT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|75704807|gb|ABA24483.1| dimethyladenosine transferase [Anabaena variabilis ATCC 29413]
Length = 271
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PR+ QH++ + + D + AA D +LEIGPGTG LT LL +LA+E D+
Sbjct: 4 PRRVFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPLVEALLAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + +++L+ + +K + KVVANIP+NI+ +I
Sbjct: 64 LCKLLVKQLGQKENFLLLQGDFLTLDLVANLLTFPKFQKPN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P + F +VLL+Q+E A RL
Sbjct: 120 EKLLGTIANPNPEPFDSIVLLIQKEVAERL 149
>gi|302873237|ref|YP_003841870.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
gi|307688596|ref|ZP_07631042.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
gi|302576094|gb|ADL50106.1| dimethyladenosine transferase [Clostridium cellulovorans 743B]
Length = 282
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + + + + A V E D+V+EIGPG G+LT LL V+AIE D ++
Sbjct: 19 KSLGQNFLTDDSVLNDIVNGAEVNENDVVIEIGPGVGTLTKELLGKAKKVIAIEVDSSLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E D ++ +D K F K+VAN+P+ ++T +I
Sbjct: 79 PILQEELKEFDNFTLIHKDATKVD--------FNELIEGEDTVKIVANLPYYVTTPIITD 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F+ + +++Q+E A R+ PS + EY + + V +Y
Sbjct: 131 LLNKKYNFTSITVMIQKEVADRINANPS--SKEYGALTLLVQYY 172
>gi|222153745|ref|YP_002562922.1| dimethyladenosine transferase [Streptococcus uberis 0140J]
gi|254807888|sp|B9DVT4.1|RSMA_STRU0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|222114558|emb|CAR43508.1| dimethyladenosine transferase [Streptococcus uberis 0140J]
Length = 290
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D ++V+ +D +K ++S + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVQVINQDILKSDLQSQI----KQFKNPDLPL 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|253700557|ref|YP_003021746.1| dimethyladenosine transferase [Geobacter sp. M21]
gi|251775407|gb|ACT17988.1| dimethyladenosine transferase [Geobacter sp. M21]
Length = 275
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 93/164 (56%), Gaps = 6/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + ++ A A D +LE+GPG G+L+ +L +GA LA+E D+ +
Sbjct: 7 KKEFGQNFLVDDSVLTRIVACVAPTADDCILEVGPGRGALSRLLAESGARFLAVEWDREL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L++ FA+ +++ D ++ + + S E +K KV AN+P+NIS+ V+
Sbjct: 67 LPLLKAEFATAQNVEIGHGDILRVDLPLLLGSRVEGKK-----WKVAANLPYNISSQVLF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
+ + ++F ++VL+LQ+E RL P EY + + + +
Sbjct: 122 RFMEHSELFEKLVLMLQKEVGDRLTAPPA-CKEYGALTVLLRLH 164
>gi|422866408|ref|ZP_16913033.1| dimethyladenosine transferase [Streptococcus sanguinis SK1058]
gi|327488831|gb|EGF20630.1| dimethyladenosine transferase [Streptococcus sanguinis SK1058]
Length = 290
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRGFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKSYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|409994071|ref|ZP_11277192.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Arthrospira platensis str. Paraca]
gi|409935063|gb|EKN76606.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Arthrospira platensis str. Paraca]
Length = 276
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + + AA + D +LEIGPGTG LT LL ++V+AIE D+
Sbjct: 6 PRKRFAQHWLRSPATLNHILEAADLSLADRILEIGPGTGILTERLLPKASSVVAIEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + ++F ID +LQ D + + +H LS F + + + KVVANIP+NI+ +I
Sbjct: 66 LCVQLAKKFGKIDNFLLLQGDILSFDLNAH-LSAFPQFQHPN---KVVANIPYNITGPII 121
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
+ LL P F +VLL+Q+E RL
Sbjct: 122 EGLLGTIAKPALKPFDAIVLLVQKEVGDRL 151
>gi|421766424|ref|ZP_16203198.1| Dimethyladenosine transferase [Lactococcus garvieae DCC43]
gi|407625192|gb|EKF51907.1| Dimethyladenosine transferase [Lactococcus garvieae DCC43]
Length = 295
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITATAELSDQVNVIEIGPGIGSLTQYLLEEAAEVMAFEIDKTL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D +++ D +K + H+ + K+ + KVVAN+P+ I+T ++
Sbjct: 87 IPILEETLAPYDNFQLVNADVLKVDMHEHIKNF----KNPNLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 143 HLIESKIPFTEFVVMMQKEVADRIAAKPS--TKAYGSLSIAVQYY 185
>gi|284928980|ref|YP_003421502.1| dimethyladenosine transferase [cyanobacterium UCYN-A]
gi|284809439|gb|ADB95144.1| dimethyladenosine transferase [cyanobacterium UCYN-A]
Length = 274
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 91/154 (59%), Gaps = 15/154 (9%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
+PRK GQH++ ++ + +++ +A + + D VLEIGPGTG LT+ LL ++V AIE D+
Sbjct: 3 YPRKRFGQHWLKDNTVLERIIKSAHLTKIDKVLEIGPGTGILTSRLLPEVSSVTAIEVDR 62
Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA---KVVANIPFNIS 230
+ + ++F L +LQED +K + LF + + F KVVANIP+NI+
Sbjct: 63 DLYEQLVKKFHYCKNLLLLQEDILK-------IDLFTEISNYNLFWPMNKVVANIPYNIT 115
Query: 231 TDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
++++LL P + +VLL+Q+E A R+
Sbjct: 116 NPILEKLLGSVSEPYNLPYEIIVLLVQKEVAKRI 149
>gi|340399677|ref|YP_004728702.1| dimethyladenosine transferase [Streptococcus salivarius CCHSS3]
gi|387760519|ref|YP_006067496.1| dimethyladenosine transferase [Streptococcus salivarius 57.I]
gi|338743670|emb|CCB94180.1| dimethyladenosine transferase (S-adenosylmethionine-6-N ,
N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Streptococcus
salivarius CCHSS3]
gi|339291286|gb|AEJ52633.1| dimethyladenosine transferase [Streptococcus salivarius 57.I]
Length = 290
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K +++ + K+S
Sbjct: 65 AENAAEVMAFEIDDRLVPILEDTLRDHDNVNVINEDVLKADLQTRVKEF----KNSELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ + Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--SKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|17230721|ref|NP_487269.1| dimethyladenosine transferase [Nostoc sp. PCC 7120]
gi|27151584|sp|Q8YS62.1|RSMA_NOSS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|17132324|dbj|BAB74928.1| rRNA (adenine-N6,N6)-dimethyltransferase [Nostoc sp. PCC 7120]
Length = 271
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D + AA D +LEIGPGTG LT LL A +++A+E D+
Sbjct: 4 PRKLFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPAVQSLVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + +++ S + +K + KVVANIP+NI+ +I
Sbjct: 64 LCELLAKQLGKKENFLLLQGDFLTIDLAANLGSFPKFQKPN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P + F +VLL+Q+E A RL
Sbjct: 120 EKLLGTISNPNLEPFDSIVLLIQKEVAERL 149
>gi|117925614|ref|YP_866231.1| dimethyladenosine transferase [Magnetococcus marinus MC-1]
gi|171460784|sp|A0LA32.1|RSMA_MAGSM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|117609370|gb|ABK44825.1| dimethyladenosine transferase [Magnetococcus marinus MC-1]
Length = 279
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G P K GQ+++++ + ++ A A ++ GD VLEIGPG GSLT LL V
Sbjct: 11 LEQHGLSPNKRFGQNFLVDPSVAPRIVALAGIKAGDRVLEIGPGVGSLTIPLLQKAGAVT 70
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+EKD+ ++ L+R A + L +++ED + ++ + G K+ AN+P+
Sbjct: 71 AVEKDRKLLPLLRVEAAGVGALTLVEEDAL-------LVDYTALAQQLGGPLKLAANLPY 123
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEP 262
NIST ++ LL F + L+ Q+E A RL EP
Sbjct: 124 NISTPLMVHLLDHHAAFECMALMFQKEVAQRLAAEP 159
>gi|291567875|dbj|BAI90147.1| dimethyladenosine transferase [Arthrospira platensis NIES-39]
Length = 274
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + + AA + D +LEIGPGTG LT LL ++V+AIE D+
Sbjct: 6 PRKRFAQHWLRSPATLNHILEAADLSLADRILEIGPGTGILTERLLPKASSVVAIEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + ++F ID +LQ D + + +H LS F + + + KVVANIP+NI+ +I
Sbjct: 66 LCVQLAKKFGKIDNFLLLQGDILSFDLNAH-LSAFPQFQHPN---KVVANIPYNITGPII 121
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
+ LL P F +VLL+Q+E RL
Sbjct: 122 EGLLGTIAKPALKPFDAIVLLVQKEVGDRL 151
>gi|255657480|ref|ZP_05402889.1| dimethyladenosine transferase [Clostridium difficile QCD-23m63]
gi|296449075|ref|ZP_06890865.1| dimethyladenosine transferase [Clostridium difficile NAP08]
gi|296879898|ref|ZP_06903871.1| dimethyladenosine transferase [Clostridium difficile NAP07]
gi|296262168|gb|EFH08973.1| dimethyladenosine transferase [Clostridium difficile NAP08]
gi|296429187|gb|EFH15061.1| dimethyladenosine transferase [Clostridium difficile NAP07]
Length = 289
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 106/180 (58%), Gaps = 9/180 (5%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + K F KSLGQ+++++S I D++ + A + GD ++E+GPG G+LT +
Sbjct: 7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITGGDNIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D++++ ++++ + ++ +V+ +D +K I+ + + K + G K
Sbjct: 67 KIAEKVVAIEIDRNLIPILKDTLSDLENTEVVNQDILKVDIQELV-----KDKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ P T +Y ++I V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAIPG--TKDYGALSIAVQYY 179
>gi|147791996|emb|CAN77505.1| hypothetical protein VITISV_017803 [Vitis vinifera]
Length = 350
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 82/147 (55%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + + ++ D++LEIGPGTG+LT LL AG +V+A+E D MV
Sbjct: 29 KSKGQHILKNPLLVDSIVEKSGIKSTDVILEIGPGTGNLTKKLLEAGKSVIAVEVDPRMV 88
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ RF ++L+V+Q D ++C + F VANIP+ IS+ +
Sbjct: 89 LELQRRFQGTPLSNRLEVIQGDVLRCDL--------------PYFDICVANIPYQISSPL 134
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL +F V++ Q E A+RLV
Sbjct: 135 TFKLLAHRPVFRCAVIMFQREFAMRLV 161
>gi|168187487|ref|ZP_02622122.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund]
gi|169294621|gb|EDS76754.1| dimethyladenosine transferase [Clostridium botulinum C str. Eklund]
Length = 281
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + + D + + V E D V+EIGPG G+LT LL V AIE D ++
Sbjct: 19 KSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELLKKAKRVCAIELDSDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E K++ +D +K F KVVAN+P+ ++T +I +
Sbjct: 79 PILTEELKDFPNFKLIHKDALKVD--------FNEIIGDEKSVKVVANLPYYVTTPIIAR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
LL G F + +++Q+E A R+ EP+ + EY ++I V +Y
Sbjct: 131 LLKEGYKFKSLTIMIQKEVAERIASEPNCK--EYGALSILVQYY 172
>gi|410669162|ref|YP_006921533.1| ribosomal RNA small subunit methyltransferase A [Thermacetogenium
phaeum DSM 12270]
gi|409106909|gb|AFV13034.1| ribosomal RNA small subunit methyltransferase A [Thermacetogenium
phaeum DSM 12270]
Length = 293
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 104/182 (57%), Gaps = 11/182 (6%)
Query: 103 ATIKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
A ++AL + G P+K LGQH++ + + +++A AA + E D+VLEIGPGTG+LT L
Sbjct: 8 AALRALLKRYGLEPKKGLGQHFLWQARLVERIADAAELTEKDLVLEIGPGTGNLTAALAR 67
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-- 219
V+A+E D+ + L++E A ++ ++++ D R +L + + GF
Sbjct: 68 RAGMVVAVEIDRSLFPLLKETLAGLENVRLVAGDAKSVDYR-ELLEI-----CAPGFTGP 121
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
KV+ N+P+ I++ +I +LL G +V ++Q+E A R + + EY +++ V +
Sbjct: 122 CKVLGNLPYYITSPLIMRLLGQGFRKELLVFMVQKEVADR-IAAAPGGKEYGSLSVAVQY 180
Query: 279 YS 280
Y+
Sbjct: 181 YA 182
>gi|417838640|ref|ZP_12484878.1| dimethyladenosine transferase [Lactobacillus johnsonii pf01]
gi|338762183|gb|EGP13452.1| dimethyladenosine transferase [Lactobacillus johnsonii pf01]
Length = 296
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA ++ GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLIDLAAIKGIVEAADIKPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K++ +D +K + + KS K+VAN+P+
Sbjct: 85 PEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VKIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L+ FS + L++Q+E A RLV +T EY P++I V
Sbjct: 141 ITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAV 187
>gi|422861576|ref|ZP_16908216.1| dimethyladenosine transferase [Streptococcus sanguinis SK330]
gi|327468444|gb|EGF13929.1| dimethyladenosine transferase [Streptococcus sanguinis SK330]
Length = 290
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKSYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|422857541|ref|ZP_16904191.1| dimethyladenosine transferase [Streptococcus sanguinis SK1057]
gi|327462724|gb|EGF09046.1| dimethyladenosine transferase [Streptococcus sanguinis SK1057]
Length = 290
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRNFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|197118669|ref|YP_002139096.1| dimethyladenosine transferase [Geobacter bemidjiensis Bem]
gi|197088029|gb|ACH39300.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase
[Geobacter bemidjiensis Bem]
Length = 275
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 94/164 (57%), Gaps = 6/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + ++ A A + D +LE+GPG G+L+ +L +GA LA+E D+ +
Sbjct: 7 KKEFGQNFLVDDSVLTRIVACVAPTKDDCILEVGPGRGALSRLLAESGARFLAVEWDREL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L++ FA+ +++ D ++ + + S E +K KV AN+P+NIS+ V+
Sbjct: 67 LPLLKAEFATNPNVEIGHGDILRVDLPLLLGSRAEGKK-----WKVAANLPYNISSQVLF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
+ + ++F ++VL+LQ+E RL P EY + + + +
Sbjct: 122 RFMEHSELFEKLVLMLQKEVGDRLTAPPA-CKEYGALTVLLRLH 164
>gi|170017706|ref|YP_001728625.1| dimethyladenosine transferase [Leuconostoc citreum KM20]
gi|414596051|ref|ZP_11445627.1| Ribosomal RNA small subunit methyltransferase A [Leuconostoc
citreum LBAE E16]
gi|421877404|ref|ZP_16308951.1| Ribosomal RNA small subunit methyltransferase A [Leuconostoc
citreum LBAE C10]
gi|421878828|ref|ZP_16310305.1| Ribosomal RNA small subunit methyltransferase A [Leuconostoc
citreum LBAE C11]
gi|226732593|sp|B1N079.1|RSMA_LEUCK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|169804563|gb|ACA83181.1| Dimethyladenosine transferase [Leuconostoc citreum KM20]
gi|372556831|emb|CCF25071.1| Ribosomal RNA small subunit methyltransferase A [Leuconostoc
citreum LBAE C10]
gi|390447314|emb|CCF26425.1| Ribosomal RNA small subunit methyltransferase A [Leuconostoc
citreum LBAE C11]
gi|390482984|emb|CCF27688.1| Ribosomal RNA small subunit methyltransferase A [Leuconostoc
citreum LBAE E16]
Length = 295
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + + + A + D V+EIGPG G+LT L + V+
Sbjct: 17 LNQYGLHAKKKFGQNFLTDLNVLHGIVDVAGITSEDYVIEIGPGIGALTEQLARSAKKVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D HMV ++ E D +KV++ D +K ++ + + F K+VAN+P+
Sbjct: 77 AFEIDPHMVAVLAETLLPYDNVKVIENDILKVNLAHVIATEF----GEGAHVKIVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ QLL + +V+++Q E A RL + T Y + + + +Y+
Sbjct: 133 YITTPILMQLLRAKISWDNIVVMMQREVADRL-NAEIGTKAYGVLTLTIQYYA 184
>gi|422877372|ref|ZP_16923842.1| dimethyladenosine transferase [Streptococcus sanguinis SK1056]
gi|332360011|gb|EGJ37825.1| dimethyladenosine transferase [Streptococcus sanguinis SK1056]
Length = 290
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K ++ ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVNLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|399888382|ref|ZP_10774259.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium arbusti SL206]
Length = 277
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 92/164 (56%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++S + + A + + D V+EIGPG G+LT LL++ V AIE D ++
Sbjct: 16 KSLGQNFLIDSTVLTDIVKGADISKEDFVIEIGPGVGTLTKQLLDSAKAVCAIELDSDLL 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D ++ +D +K F + K+VAN+P+ ++T +I +
Sbjct: 76 PILEEELKEYDNFTLVHKDALKVD--------FNEIINYENSVKLVANLPYYVTTPIISK 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL G +F + +++Q+E A R+ +P+ + EY +++ V +Y
Sbjct: 128 LLISGYVFKSLTIMIQKEVAERIAAKPNCK--EYGALSLLVQYY 169
>gi|218441380|ref|YP_002379709.1| dimethyladenosine transferase [Cyanothece sp. PCC 7424]
gi|218174108|gb|ACK72841.1| dimethyladenosine transferase [Cyanothece sp. PCC 7424]
Length = 273
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 86/150 (57%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + DQ+ AA +Q+ D +LEIGPGTG LT LL +V+A+E D+
Sbjct: 5 PRKRFAQHWLRSEQALDQIIEAAQLQQSDHILEIGPGTGILTRRLLPEVNSVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + +D +LQ D + + SH+++ F + KVVANIP+NI+ ++
Sbjct: 65 LCQKLGKSLGKLDNFLLLQGDILSLDLESHLVN-FPKFNHPH---KVVANIPYNITGLIL 120
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
+ LL P + +VLL+Q+E A RL
Sbjct: 121 EYLLGTIAEPTQKNYELIVLLIQKEVAERL 150
>gi|291533505|emb|CBL06618.1| dimethyladenosine transferase [Megamonas hypermegale ART12/1]
Length = 287
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ I + AA VQE D VLEIGPG G+LT L GA V +E D+ +
Sbjct: 25 KRLGQNFLIDANIVQGIVDAANVQENDRVLEIGPGIGTLTQALAETGAEVTCVELDKRLP 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + D ++V+Q D +K +I M F KVVAN+P+ I+T +I
Sbjct: 85 EVLAHTLDAYDNVRVIQGDILKVNIPEIM--------GDKPF-KVVANLPYYITTPIIMA 135
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
LL +++V+++Q+E A R+ +P +T Y +++ V +Y+
Sbjct: 136 LLEKHLPITDIVVMVQKEVAERMAAQPGGKT--YGALSVAVQYYT 178
>gi|323350567|ref|ZP_08086229.1| dimethyladenosine transferase [Streptococcus sanguinis VMC66]
gi|322123249|gb|EFX94934.1| dimethyladenosine transferase [Streptococcus sanguinis VMC66]
Length = 290
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|188588306|ref|YP_001919554.1| dimethyladenosine transferase [Clostridium botulinum E3 str. Alaska
E43]
gi|188498587|gb|ACD51723.1| dimethyladenosine transferase [Clostridium botulinum E3 str. Alaska
E43]
Length = 283
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++L+ + + + A V E D ++EIGPG G+LT LL V IE D ++
Sbjct: 21 KSLGQNFLLDESVLNDIVCGAEVNENDFIIEIGPGVGTLTAKLLQKAKRVTCIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++++ D+ +++ D +K M + K+VAN+P+ ++T +I +
Sbjct: 81 PILQQELGEYDKFELIHNDALKVDFNEIM--------KNEEHVKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY +++ V +Y
Sbjct: 133 LLKENHKFESLTIMIQKEVAERINAEPNCK--EYGALSVLVQYY 174
>gi|390631024|ref|ZP_10258994.1| Ribosomal RNA small subunit methyltransferase A [Weissella confusa
LBAE C39-2]
gi|390483772|emb|CCF31342.1| Ribosomal RNA small subunit methyltransferase A [Weissella confusa
LBAE C39-2]
Length = 298
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 93/172 (54%), Gaps = 6/172 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G +KSLGQ+++ + I + AA V++ D V+EIGPG G+LT L A V+
Sbjct: 17 MNQFGINTKKSLGQNFLTDINILKNIVAAGDVKDTDNVVEIGPGIGALTEQLARAAKQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ A D + ++ D +K + F ++ K+VAN+P+
Sbjct: 77 AFEIDDRLIPVLDHTMAPYDNVTIVHNDILKVDLEKEFAKQF---ADTTAPLKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
I+T ++ Q+L G F +V+++Q+E A RL EP T +Y + + V +
Sbjct: 134 YITTPILMQVLQSGIHFDNIVVMMQKEVADRLSAEPG--TKDYGSLTLAVQY 183
>gi|375086372|ref|ZP_09732784.1| dimethyladenosine transferase [Megamonas funiformis YIT 11815]
gi|374565409|gb|EHR36678.1| dimethyladenosine transferase [Megamonas funiformis YIT 11815]
Length = 287
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ I + AA VQE D VLEIGPG G+LT L GA V +E D+ +
Sbjct: 25 KRLGQNFLIDANIVQGIVDAANVQENDRVLEIGPGIGTLTQALAETGAEVTCVELDKRLP 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + D ++V+Q D +K +I M F KVVAN+P+ I+T +I
Sbjct: 85 EVLAHTLDAYDNVRVIQGDILKVNIPEIM--------GDKPF-KVVANLPYYITTPIIMA 135
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
LL +++V+++Q+E A R+ +P +T Y +++ V +Y+
Sbjct: 136 LLEKHLPITDIVVMVQKEVAERMAAQPGGKT--YGALSVAVQYYT 178
>gi|203284494|ref|YP_002222234.1| dimethyladenosine transferase [Borrelia duttonii Ly]
gi|201083937|gb|ACH93528.1| dimethyladenosine transferase [Borrelia duttonii Ly]
Length = 274
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 86/154 (55%), Gaps = 12/154 (7%)
Query: 107 ALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATV 166
L +K PRK GQ+Y++N I +++ A +++ + + EIGPG G++T LLN +
Sbjct: 14 VLKNKNIAPRKIWGQNYLINENIREKIIDALDIKKNEKIWEIGPGLGAMTATLLNKANFL 73
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
A E D ++ E+F + K+++ DF+K + ++ + K+V+N+P
Sbjct: 74 TAFEIDPKYSEILNEKFGQLKNFKLIEGDFLKTY-----------KQEKTSINKIVSNLP 122
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
+NI++ VI L+ +I + +V +Q+E A R++
Sbjct: 123 YNIASKVISTLIE-DEILTHMVFTVQKELADRMI 155
>gi|225869784|ref|YP_002745731.1| dimethyladenosine transferase [Streptococcus equi subsp. equi 4047]
gi|254807885|sp|C0M8P2.1|RSMA_STRE4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|225699188|emb|CAW92442.1| dimethyladenosine transferase [Streptococcus equi subsp. equi 4047]
Length = 290
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKSILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ +V ++ + D ++V+ +D +K +++ + ++ S+
Sbjct: 65 AERAAEVMAFEIDERLVPILADTLRDFDNVQVVNQDILKADLQTQL-----KQFSNPDLP 119
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVN 277
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V
Sbjct: 120 IKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQ 177
Query: 278 FY 279
+Y
Sbjct: 178 YY 179
>gi|218132712|ref|ZP_03461516.1| hypothetical protein BACPEC_00573 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992438|gb|EEC58441.1| dimethyladenosine transferase [[Bacteroides] pectinophilus ATCC
43243]
Length = 296
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T++ + G +K GQ+++++ + +++ A + + D VLEIGPG G++T +L
Sbjct: 13 TLEIIKKYGFGFQKRFGQNFLIDGNVVEKIVREAGITKDDFVLEIGPGIGTMTQILCENA 72
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A+E D++++ ++ E A D + V+ ED +K +R K+ KVVA
Sbjct: 73 REVAAVEIDKNLIPILAETLAPYDNVSVINEDILKVDVRK-----LAEEKNDGRPIKVVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V FY+
Sbjct: 128 NLPYYITTPIIMGLFESHVPLESITIMVQKEVAQRMQVGPG--TKDYGALSLAVQFYA 183
>gi|386756622|ref|YP_006229838.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus sp.
JS]
gi|449092755|ref|YP_007425246.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
XF-1]
gi|384929904|gb|AFI26582.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. JS]
gi|449026670|gb|AGE61909.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
XF-1]
Length = 292
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 182
>gi|381206073|ref|ZP_09913144.1| dimethyladenosine transferase [SAR324 cluster bacterium JCVI-SC
AAA005]
Length = 282
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
++ GQH+++ ++ A VQ GD VLEIGPG G LT LL GA V A+E D +
Sbjct: 19 KRKWGQHFLVRERYVQRMIELAGVQAGDKVLEIGPGRGVLTRALLEIGAFVRAVEIDPTL 78
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
G +++ FA Q ++L D ++ I + SS A++VAN+P+N +T +
Sbjct: 79 QGFLQQEFAGSSQFQLLCGDALELLIDELL--------PSSQPARIVANLPYNAATAIFF 130
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LLP + ++ L++Q E A R+
Sbjct: 131 HLLPWREYWNSWSLMVQYEVAQRI 154
>gi|339640026|ref|ZP_08661470.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 056
str. F0418]
gi|339453295|gb|EGP65910.1| dimethyladenosine transferase [Streptococcus sp. oral taxon 056
str. F0418]
Length = 290
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ KS
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KSPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|443314473|ref|ZP_21044029.1| dimethyladenosine transferase [Leptolyngbya sp. PCC 6406]
gi|442785918|gb|ELR95702.1| dimethyladenosine transferase [Leptolyngbya sp. PCC 6406]
Length = 306
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 23/168 (13%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AAAA+ D VLEIGPGTG LT L+ +V+A+E D+
Sbjct: 8 PRKRFGQHWLRSEVILDRIVAAAALGLCDRVLEIGPGTGLLTQRLMAQAGSVVAVEVDRD 67
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHML-----SLFERRKSSSGFA---------- 219
+ +R +F + ++++ D +K +RS + S F SS
Sbjct: 68 LCRRLRSQFGDRETFELIEGDVLKLDLRSMLAEQPRDSQFRSDPHSSANPSPHKASPHKA 127
Query: 220 ---KVVANIPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
KVVANIP+ I+ ++++LL P F +VLL+Q+E A RL
Sbjct: 128 SPNKVVANIPYYITGPILERLLGTIAQPNPYPFESIVLLVQQEVAQRL 175
>gi|321313712|ref|YP_004205999.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus subtilis BSn5]
gi|320019986|gb|ADV94972.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus subtilis BSn5]
Length = 292
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 182
>gi|335031952|ref|ZP_08525365.1| dimethyladenosine transferase [Streptococcus anginosus SK52 = DSM
20563]
gi|333768234|gb|EGL45433.1| dimethyladenosine transferase [Streptococcus anginosus SK52 = DSM
20563]
Length = 291
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+ E D+ +V ++ + D + V+ ED +K ++ + + S
Sbjct: 65 AENAAEVMTFEIDERLVPILADTLRDFDNVCVVNEDILKSDLQVRIKEF----ANPSLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|422853380|ref|ZP_16900044.1| dimethyladenosine transferase [Streptococcus sanguinis SK160]
gi|325697392|gb|EGD39278.1| dimethyladenosine transferase [Streptococcus sanguinis SK160]
Length = 290
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLTQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|427728682|ref|YP_007074919.1| dimethyladenosine transferase [Nostoc sp. PCC 7524]
gi|427364601|gb|AFY47322.1| dimethyladenosine transferase [Nostoc sp. PCC 7524]
Length = 274
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 87/150 (58%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D + AA D +LEIGPGTG LT LL ++LA+E D+
Sbjct: 4 PRKYFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPLVQSLLAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + +++++ + ++ + KVVANIP+NI+ +I
Sbjct: 64 LCELLAKQLGKKENFLLLQGDFLTLDLDTNLVAFPKFQQPN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P F +VLL+Q+E A RL
Sbjct: 120 EKLLGTITNPNPQPFDSIVLLIQKEVAERL 149
>gi|187933536|ref|YP_001884370.1| dimethyladenosine transferase [Clostridium botulinum B str. Eklund
17B]
gi|187721689|gb|ACD22910.1| dimethyladenosine transferase [Clostridium botulinum B str. Eklund
17B]
Length = 283
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++L+ + + + A V E D ++EIGPG G+LT LL V IE D ++
Sbjct: 21 KSLGQNFLLDESVLNDIVDGAEVNENDFIIEIGPGVGTLTAKLLQKAKMVTCIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++++ D+ +++ D +K M + K+VAN+P+ ++T +I +
Sbjct: 81 PILQQELGEYDKFELIHNDALKVDFNEIM--------KNEEHVKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY +++ V +Y
Sbjct: 133 LLKENHKFESLTIMIQKEVAERINAEPNCK--EYGALSVLVQYY 174
>gi|422850037|ref|ZP_16896713.1| dimethyladenosine transferase [Streptococcus sanguinis SK115]
gi|325688925|gb|EGD30933.1| dimethyladenosine transferase [Streptococcus sanguinis SK115]
Length = 290
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLSDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKSYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|401682485|ref|ZP_10814376.1| dimethyladenosine transferase [Streptococcus sp. AS14]
gi|400184136|gb|EJO18381.1| dimethyladenosine transferase [Streptococcus sp. AS14]
Length = 290
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLTQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|269797689|ref|YP_003311589.1| dimethyladenosine transferase [Veillonella parvula DSM 2008]
gi|269094318|gb|ACZ24309.1| dimethyladenosine transferase [Veillonella parvula DSM 2008]
Length = 284
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 97/165 (58%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ I D++ AA + G+ VLE+GPG G+LT L +GA V AIE D+ ++
Sbjct: 25 KKLGQNFLIKRGIVDKIVHAAELTVGEPVLEVGPGIGTLTQGLAQSGADVTAIELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ AS + ++++ D +K + + M + F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLASYNNVRIIHGDVLKLDVPTIM--------NHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V+++Q+E ALR+V +P T +Y +++ V +Y+
Sbjct: 136 LLESKLPIERLVVMVQKEVALRMVAKPG--TKDYGALSVAVQYYT 178
>gi|308807092|ref|XP_003080857.1| Ribosomal RNA adenine dimethylase (ISS) [Ostreococcus tauri]
gi|116059318|emb|CAL55025.1| Ribosomal RNA adenine dimethylase (ISS) [Ostreococcus tauri]
Length = 344
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 79/150 (52%), Gaps = 18/150 (12%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N I + A V+ D+VLEIGPGTG+LT LL+A V+A+E D MV
Sbjct: 43 KSFGQHILKNPAIVTAIIDKAGVKSTDVVLEIGPGTGNLTTKLLDACKKVVAVEFDPRMV 102
Query: 177 GLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
+R R +L+++Q DF+K + F VAN+P+ IS+
Sbjct: 103 LELRRRVQGDPVWNSKLEIIQGDFLKVDL--------------PYFDVCVANVPYQISSP 148
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLVEP 262
+I +LL +F L+ Q E A+RLV P
Sbjct: 149 LIFKLLAHRPMFRSATLMFQREFAMRLVAP 178
>gi|195977405|ref|YP_002122649.1| dimethyladenosine transferase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225869264|ref|YP_002745212.1| dimethyladenosine transferase [Streptococcus equi subsp.
zooepidemicus]
gi|226732627|sp|B4U0U9.1|RSMA_STREM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|259494258|sp|C0MF36.1|RSMA_STRS7 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|195974110|gb|ACG61636.1| dimethyladenosine transferase [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225702540|emb|CAX00496.1| dimethyladenosine transferase [Streptococcus equi subsp.
zooepidemicus]
Length = 290
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ +V ++ + D ++V+ +D +K +++ + ++ S+
Sbjct: 65 AERAAEVMAFEIDERLVPILADTLRDFDNVQVVNQDILKADLQTQL-----KQFSNPDLP 119
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVN 277
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V
Sbjct: 120 IKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQ 177
Query: 278 FY 279
+Y
Sbjct: 178 YY 179
>gi|386317774|ref|YP_006013938.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|417752255|ref|ZP_12400477.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|323128061|gb|ADX25358.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333771977|gb|EGL48868.1| dimethyladenosine transferase [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
Length = 290
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K ++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQIQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|46399670|emb|CAF23119.1| putative dimethyladenosine transferase [Candidatus Protochlamydia
amoebophila UWE25]
Length = 256
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 13/161 (8%)
Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE-- 181
M++ I ++ A+ VQ G++VLEIGPG GSLT +L A V+A+EKD L RE
Sbjct: 1 MIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVVAVEKD---FVLARELK 57
Query: 182 RFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
RF + QL++ ED + + + S R AKV+AN+P++++T ++ +++
Sbjct: 58 RFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIANLPYHLTTPILAEMVVR 113
Query: 241 GDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
+FS + +++QEE A R+ P S+Y IF+NFYS
Sbjct: 114 RKLFSSLTVMVQEEVARRMTALPG--QSDYSSFTIFLNFYS 152
>gi|209526260|ref|ZP_03274790.1| dimethyladenosine transferase [Arthrospira maxima CS-328]
gi|376007927|ref|ZP_09785109.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
[Arthrospira sp. PCC 8005]
gi|423062825|ref|ZP_17051615.1| dimethyladenosine transferase [Arthrospira platensis C1]
gi|209493357|gb|EDZ93682.1| dimethyladenosine transferase [Arthrospira maxima CS-328]
gi|375323720|emb|CCE20862.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase
[Arthrospira sp. PCC 8005]
gi|406715781|gb|EKD10934.1| dimethyladenosine transferase [Arthrospira platensis C1]
Length = 274
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + + AA + GD +LEIGPGTG LT LL ++V+A+E D+
Sbjct: 6 PRKRFAQHWLRSPATLNHILEAADLSLGDRILEIGPGTGILTERLLPKVSSVVAVEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + ++F ID +LQ D + + + LS F + ++ + KVVANIP+NI+ +I
Sbjct: 66 LCVQLAKKFGKIDNFLLLQGDILNFDLNGY-LSGFPKFQNPN---KVVANIPYNITGPII 121
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
+ LL P F +VLL+Q+E RL
Sbjct: 122 EGLLGTIAKPAVKPFDAIVLLVQKEVGARL 151
>gi|29840068|ref|NP_829174.1| dimethyladenosine transferase [Chlamydophila caviae GPIC]
gi|33301245|sp|Q823V2.1|RSMA_CHLCV RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|29834416|gb|AAP05052.1| dimethyladenosine transferase [Chlamydophila caviae GPIC]
Length = 278
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 99/172 (57%), Gaps = 16/172 (9%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
+GR P+K L Q+++++ I ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+E
Sbjct: 17 QGR-PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALE 75
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
KD + LK L D + LS E K G +VVAN+P++I+
Sbjct: 76 KDPMFE----------ETLKQLPIDLEITDACKYPLSQLE-EKGWQGKGRVVANLPYHIT 124
Query: 231 TDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
T ++ +L L + + + V +++Q+E A R+ +P + EY + IF+ F++
Sbjct: 125 TPLLTKLFLEVPNQWKTVTVMMQDEVARRITAQPGGK--EYGSLTIFLQFFA 174
>gi|407010616|gb|EKE25458.1| dimethyladenosine transferase [uncultured bacterium]
Length = 268
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 91/144 (63%), Gaps = 5/144 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + ++ +++ + D+V+EIGPG G+LT +L+ V+AIE D +
Sbjct: 7 KKSLGQNFLKDDQVLEKIVKNGNISPDDVVIEIGPGQGALTELLVEKCKKVIAIELDDRL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E+F + ++++ +D +K ++ L + + SG+ KV+ANIP+ I+ +I+
Sbjct: 67 IPVLQEKFQYDENVEIIHDDILKI----NLPELIVKNELQSGY-KVIANIPYYITAPIIR 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL SE++L++Q+E A R+
Sbjct: 122 LLLETKFPPSEIILMVQKEVAERI 145
>gi|422880875|ref|ZP_16927331.1| dimethyladenosine transferase [Streptococcus sanguinis SK355]
gi|332365863|gb|EGJ43620.1| dimethyladenosine transferase [Streptococcus sanguinis SK355]
Length = 290
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|334120144|ref|ZP_08494226.1| Ribosomal RNA small subunit methyltransferase A [Microcoleus
vaginatus FGP-2]
gi|333456932|gb|EGK85559.1| Ribosomal RNA small subunit methyltransferase A [Microcoleus
vaginatus FGP-2]
Length = 273
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 90/150 (60%), Gaps = 10/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D++ AA++ + D VLEIGPGTG LT LL A +V+A+E D+
Sbjct: 6 PRKQFAQHWLKSEKALDKIVKAASL-DRDRVLEIGPGTGILTRRLLPAAESVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + ++ D +LQ D ++ + + L+ F + ++ + KVVANIP+NI+ ++
Sbjct: 65 LCLKLAKQLGKTDNFLLLQGDILEMDLEAE-LTAFPKFQNPN---KVVANIPYNITGPIL 120
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P F +VLL+Q+E A RL
Sbjct: 121 QKLLGTISVPAAKPFDSIVLLVQKEVAQRL 150
>gi|153815218|ref|ZP_01967886.1| hypothetical protein RUMTOR_01452 [Ruminococcus torques ATCC 27756]
gi|317502323|ref|ZP_07960492.1| dimethyladenosine transferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089927|ref|ZP_08338819.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336438636|ref|ZP_08618266.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145847477|gb|EDK24395.1| dimethyladenosine transferase [Ruminococcus torques ATCC 27756]
gi|316896279|gb|EFV18381.1| dimethyladenosine transferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330403159|gb|EGG82720.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336018607|gb|EGN48345.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 292
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 98/178 (55%), Gaps = 8/178 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI L +K GQ++++++ + D++ AA + + D+VLEIGPG G++T L A
Sbjct: 12 TIAVLQKYNFIFQKKFGQNFLIDTHVLDKIIRAAEIGKDDLVLEIGPGIGTMTQYLSCAA 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D+ ++ ++ + D ++V+ ED +K IR + E R KVVA
Sbjct: 72 GKVIAVEIDRALIPILEDTLDGYDNVRVINEDVLKVDIRKLVEEENEGRP-----IKVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 127 NLPYYITTPIIMGLFENHVPIKSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 182
>gi|428214092|ref|YP_007087236.1| dimethyladenosine transferase [Oscillatoria acuminata PCC 6304]
gi|428002473|gb|AFY83316.1| dimethyladenosine transferase [Oscillatoria acuminata PCC 6304]
Length = 279
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 9/159 (5%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
+PRK QH++ + + +++ AAA+ GD +LEIGPGTG LT LL+ +V+A+E D+
Sbjct: 5 YPRKQFAQHWLQSDKALNEIVNAAALSPGDRILEIGPGTGILTRQLLSRAESVVAVEIDR 64
Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ + ++ I +L DF+ + S + E + KVVANIP+NI+ +
Sbjct: 65 NLSQKLAKKLGEIPNFLLLCADFLDLDLESVLTQTPEHFHHPN---KVVANIPYNITGPI 121
Query: 234 IKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRT 266
+++LL P + VVLL+Q+E A R+ P RT
Sbjct: 122 LEKLLGTISQPPRMSYQSVVLLIQKEVAERINAAPGSRT 160
>gi|373107972|ref|ZP_09522263.1| dimethyladenosine transferase [Stomatobaculum longum]
gi|371650138|gb|EHO15606.1| dimethyladenosine transferase [Stomatobaculum longum]
Length = 283
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLA 168
+++ RF +K GQ+++++S + D++AAAA + E D VLEIGPG G+LT L VLA
Sbjct: 17 HTEFRF-QKKFGQNFLIDSHVLDRIAAAAELTEEDAVLEIGPGIGTLTQHLAERAGKVLA 75
Query: 169 IEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+E D+ ++ ++ E A D +++LQ D ++ ++ L R KVVAN+P+
Sbjct: 76 VEIDRTLIPILEESLADYDNVEILQGDILEQNLDELAEKLGGRP------MKVVANLPYY 129
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG 281
I+T ++ LL + +++Q E A R+ + S +Y +++ V +Y+
Sbjct: 130 ITTPILMTLLESKLPIVSITVMVQREVAERM-QASPGGKDYGALSLAVQYYAA 181
>gi|260437839|ref|ZP_05791655.1| dimethyladenosine transferase [Butyrivibrio crossotus DSM 2876]
gi|292809864|gb|EFF69069.1| dimethyladenosine transferase [Butyrivibrio crossotus DSM 2876]
Length = 287
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ I +++ A V + D VLEIGPG G++T +L V A+E D ++
Sbjct: 21 QKKFGQNFLIDEGIVNKIVREAGVTKDDFVLEIGPGIGTMTQLLCEQAGGVAAVEIDTNL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A D + ++ ED +K I+ K+ KVVAN+P+ I+T +I
Sbjct: 81 IPILKETLAEYDNVTIINEDILKVDIKK-----LAEEKNGGKPIKVVANLPYYITTPIIM 135
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P T +Y +++ V +YS
Sbjct: 136 GLFESNVPIDSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYS 179
>gi|251778936|ref|ZP_04821856.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243083251|gb|EES49141.1| dimethyladenosine transferase [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 283
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++L+ + + + A V E D ++EIGPG G+LT LL V IE D ++
Sbjct: 21 KSLGQNFLLDESVLNDIVDGAEVNENDFIIEIGPGVGTLTAKLLQKAKRVTCIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++++ D+ +++ D +K M + K+VAN+P+ ++T +I +
Sbjct: 81 PILQQELGEYDKFELIHNDALKVDFNEIM--------KNEEHVKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY +++ V +Y
Sbjct: 133 LLKENHKFESLTIMIQKEVAERINAEPNCK--EYGALSVLVQYY 174
>gi|428772442|ref|YP_007164230.1| dimethyladenosine transferase [Cyanobacterium stanieri PCC 7202]
gi|428686721|gb|AFZ46581.1| dimethyladenosine transferase [Cyanobacterium stanieri PCC 7202]
Length = 273
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 91/154 (59%), Gaps = 10/154 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQH++ + + + A + +GD +LEIGPGTG LT +L+ +LAIE D+ +
Sbjct: 6 KKKFGQHWLKSENALNNIIRTAQLSKGDRILEIGPGTGVLTERMLSYVDKLLAIEIDRDL 65
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ +++ D +L+ DF++ I ++L+ F + S + KVVANIP+NI+ +I+
Sbjct: 66 CKLLVKKYGERDNFLLLEGDFLELDI-DNILNNF---PNFSNYNKVVANIPYNITGPIIE 121
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLV-EPS 263
+LL P +VLL+Q+E RLV EP+
Sbjct: 122 KLLGTIANPNPKPLESIVLLIQKEVGDRLVAEPN 155
>gi|118445093|ref|YP_879149.1| dimethyladenosine transferase [Clostridium novyi NT]
gi|118135549|gb|ABK62593.1| dimethyladenosine transferase [Clostridium novyi NT]
Length = 281
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + + D + + V E D V+EIGPG G+LT LL V A+E D ++
Sbjct: 19 KSLGQNFLTDQNVLDDIVNGSNVCEEDFVIEIGPGVGTLTKELLKKAKKVCAVELDSELI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E +++ +D +K L KS KVVAN+P+ ++T +I +
Sbjct: 79 PILTEELKDFPNFELIHKDALKVDFN----ELIGEEKS----VKVVANLPYYVTTPIIAR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
LL G F + +++Q+E A R+ EP+ + EY ++I V +Y
Sbjct: 131 LLKEGYKFKSLTIMIQKEVAERIASEPNCK--EYGALSILVQYY 172
>gi|319940004|ref|ZP_08014358.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
anginosus 1_2_62CV]
gi|319810718|gb|EFW07045.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
anginosus 1_2_62CV]
Length = 291
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + E V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDENVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+ E D+ +V ++ + D + V+ ED +K ++ + + S
Sbjct: 65 AENAAEVMTFEIDERLVPILADTLRDFDNVCVVNEDILKSDLQVRIKEF----ANPSLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPNSKS--YGNLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|400290879|ref|ZP_10792906.1| dimethyladenosine transferase [Streptococcus ratti FA-1 = DSM
20564]
gi|399921670|gb|EJN94487.1| dimethyladenosine transferase [Streptococcus ratti FA-1 = DSM
20564]
Length = 291
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRHVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A ++A E D +V ++ + D +KV+ ED +K +++ + +
Sbjct: 65 AEKAAEIMAFEIDDRLVPILADTLRDFDNVKVINEDILKSDLQTRIKEF----ANPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPE--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|302390854|ref|YP_003826674.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501]
gi|302202931|gb|ADL11609.1| dimethyladenosine transferase [Acetohalobium arabaticum DSM 5501]
Length = 290
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 6/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I D++ +A + D V+EIGPG GSLT L V AIE D+
Sbjct: 23 KKSLGQNFLVDRNIIDKIIVSADLTSYDHVIEIGPGIGSLTQRLAEGAKAVWAIELDERF 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E ++ + + +Q D ++ + L S KVVAN+P+ I+T +I
Sbjct: 83 IKILEENLSNYNNVNFIQADALEYDFEQLLTKL------SGESIKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+LL F VV+++Q+E A R+V +Y +++ V +YS
Sbjct: 137 RLLEEKLPFERVVVMVQKEVAERIVATPEDGKKYGSLSLAVRYYS 181
>gi|407979101|ref|ZP_11159923.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. HYC-10]
gi|407414317|gb|EKF35970.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. HYC-10]
Length = 292
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A + + V+EIGPG G+LT L V A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEITDETGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K +R M F K VVAN+P+ ++T +I
Sbjct: 83 LPILNDTLSPYDNVTIIHQDVLKADVRKVMEEQFADCKE----VMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ PS + EY ++I V FY+
Sbjct: 139 KLLEENLPLKGIVVMLQKEVADRMAAAPS--SKEYNSLSIAVQFYT 182
>gi|15901808|ref|NP_346412.1| dimethyladenosine transferase [Streptococcus pneumoniae TIGR4]
gi|14973492|gb|AAK76052.1| dimethyladenosine transferase [Streptococcus pneumoniae TIGR4]
Length = 279
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 10 KKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAAQVMAFEIDHRL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D + V+ ED +K + H+ + K+ KVVAN+P+ I+T ++
Sbjct: 70 VPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPIKVVANLPYYITTPILM 125
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ G F E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 126 HLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 168
>gi|227888939|ref|ZP_04006744.1| dimethyladenosine transferase [Lactobacillus johnsonii ATCC 33200]
gi|227850527|gb|EEJ60613.1| dimethyladenosine transferase [Lactobacillus johnsonii ATCC 33200]
Length = 294
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K++ +D +K + + KS +VAN+P+
Sbjct: 85 PEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VNIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L+ FS + L++Q+E A RLV +T EY P++I V
Sbjct: 141 ITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAV 187
>gi|256851971|ref|ZP_05557358.1| dimethyladenosine transferase [Lactobacillus jensenii 27-2-CHN]
gi|260661459|ref|ZP_05862372.1| dimethyladenosine transferase [Lactobacillus jensenii 115-3-CHN]
gi|256615383|gb|EEU20573.1| dimethyladenosine transferase [Lactobacillus jensenii 27-2-CHN]
gi|260547914|gb|EEX23891.1| dimethyladenosine transferase [Lactobacillus jensenii 115-3-CHN]
Length = 297
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 114 FPRKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
F +K+LGQ+++++ ++IND L AA ++ D VLEIGPG GSLT +L GA VLA E D
Sbjct: 27 FAKKNLGQNFLISLNKINDILDAAE-IKSDDQVLEIGPGIGSLTEQMLLRGAKVLAYEID 85
Query: 173 QHMVGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
Q + ++ D K++ +D +K + + F+ K KVVAN+
Sbjct: 86 QDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKEDIGDFFDLNKP----IKVVANL 141
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
P+ I+T +I L F + L++Q+E A RL S EY P+ IFV
Sbjct: 142 PYYITTPIIFALAKSDLAFESLTLMMQKEVAERLCASS-GNKEYGPLTIFV 191
>gi|262281831|ref|ZP_06059600.1| dimethyladenosine transferase [Streptococcus sp. 2_1_36FAA]
gi|262262285|gb|EEY80982.1| dimethyladenosine transferase [Streptococcus sp. 2_1_36FAA]
Length = 290
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|78184856|ref|YP_377291.1| dimethyladenosine transferase [Synechococcus sp. CC9902]
gi|119365856|sp|Q3AXF3.1|RSMA_SYNS9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|78169150|gb|ABB26247.1| dimethyladenosine transferase [Synechococcus sp. CC9902]
Length = 274
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIE 170
G RK GQH++ ++ + DQ+ AA +Q+ D VLE+GPG G+LT LL + A + AIE
Sbjct: 5 GHTARKRFGQHWLRDARVLDQIVEAARLQQDDCVLEVGPGRGALTERLLASPAAQIHAIE 64
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNI 229
D+ +V + +RF S + + + D ++ + H++ GFA KVVANIP+NI
Sbjct: 65 LDRDLVRGLHDRFGSESRFSLREGDVLEAPL--HLV--------DGGFANKVVANIPYNI 114
Query: 230 STDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
+ ++ +L+ P+ + +VLLLQ+E A R+
Sbjct: 115 TGPLLARLIGRLDRPVEPTYDCLVLLLQKEVAERI 149
>gi|430757309|ref|YP_007211215.1| Dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430021829|gb|AGA22435.1| Dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. BSP1]
Length = 292
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHHDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 182
>gi|297205158|ref|ZP_06922554.1| dimethyladenosine transferase [Lactobacillus jensenii JV-V16]
gi|297149736|gb|EFH30033.1| dimethyladenosine transferase [Lactobacillus jensenii JV-V16]
Length = 293
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 14/171 (8%)
Query: 114 FPRKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
F +K+LGQ+++++ ++IND L AA ++ D VLEIGPG GSLT +L GA VLA E D
Sbjct: 23 FAKKNLGQNFLISLNKINDILDAAE-IKSDDQVLEIGPGIGSLTEQMLLRGAKVLAYEID 81
Query: 173 QHMVGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
Q + ++ D K++ +D +K + + F+ K KVVAN+
Sbjct: 82 QDLPEILHNELPQKVENKHLDDVFKLVMKDILKADFKEDIGDFFDLNKP----IKVVANL 137
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
P+ I+T +I L F + L++Q+E A RL S EY P+ IFV
Sbjct: 138 PYYITTPIIFALAKSDLAFESLTLMMQKEVAERLCASS-GNKEYGPLTIFV 187
>gi|357136909|ref|XP_003570045.1| PREDICTED: probable dimethyladenosine transferase-like
[Brachypodium distachyon]
Length = 355
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 80/148 (54%), Gaps = 18/148 (12%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHM 175
KS GQH + N + D + A A ++ D VLEIGPGTG+LT LL AG V+A+E D M
Sbjct: 28 KSKGQHILKNPALVDSIIAKAGLKPTDTVLEIGPGTGNLTKRLLEAGVKAVVAVELDPRM 87
Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
V + RF + Q++V+Q D +KC + F VANIP+ IS+
Sbjct: 88 VLELSRRFQGHPLLAQMQVIQGDVLKCDL--------------PYFDICVANIPYQISSP 133
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +LL IF V++ Q E A+RLV
Sbjct: 134 LTFKLLSHPPIFRCAVIMFQREFAMRLV 161
>gi|116070730|ref|ZP_01467999.1| 16S rRNA dimethylase [Synechococcus sp. BL107]
gi|116066135|gb|EAU71892.1| 16S rRNA dimethylase [Synechococcus sp. BL107]
Length = 274
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIE 170
G RK GQH++ ++ + DQ+ +AA +Q+ D VLE+GPG G+LT LL +A A + AIE
Sbjct: 5 GHTARKRFGQHWLRDARVLDQIVSAARLQQDDRVLEVGPGRGALTERLLASAAAQIHAIE 64
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNI 229
D+ +V + +RF + + + + D + + H+ GFA KVVANIP+NI
Sbjct: 65 LDRDLVQGLHDRFGAQSRFSLREGDVLDAPL--HL--------GDGGFANKVVANIPYNI 114
Query: 230 STDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
+ ++ +L+ P+ + +VLLLQ+E A R+
Sbjct: 115 TGPLLARLIGRLDRPVEPTYDCLVLLLQKEVAERI 149
>gi|322390323|ref|ZP_08063851.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
903]
gi|321142971|gb|EFX38421.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
903]
Length = 291
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|116511486|ref|YP_808702.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
SK11]
gi|385838871|ref|YP_005876501.1| Dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
A76]
gi|414073906|ref|YP_006999123.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
UC509.9]
gi|116107140|gb|ABJ72280.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
SK11]
gi|358750099|gb|AEU41078.1| Dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
A76]
gi|413973826|gb|AFW91290.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 294
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITETADLSKEVNVIEIGPGIGSLTQYLLEEAAEVMAFEIDKSL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++ ED +K +LS ++ K+ + KVVAN+P+ I+T ++
Sbjct: 87 IPILEETMAPYDNFTLVSEDILKV----DLLSEIQKFKNPNLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L+ FSE V+++Q+E A R+ +T Y ++I V +Y
Sbjct: 143 HLIESKIPFSEFVVMMQKEVADRIAARP-KTKAYGSLSIAVQYY 185
>gi|297735070|emb|CBI17432.3| unnamed protein product [Vitis vinifera]
Length = 383
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 82/153 (53%), Gaps = 17/153 (11%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
K F KS GQH + N + D + + ++ D VLEIGPGTG+LT LL A V+A+E
Sbjct: 44 KHMFLYKSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQAAQRVVAVE 103
Query: 171 KDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
D MV ++R+R A DQL V+ +D +K F VVANIP+
Sbjct: 104 LDARMVEILRKRVAEHGLEDQLTVICKDALKTDF--------------PQFDLVVANIPY 149
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
IS+ ++ +L+ + F LLLQ+E A RL+
Sbjct: 150 GISSPLVAKLVFGANPFRSATLLLQKEFARRLL 182
>gi|433653831|ref|YP_007297539.1| dimethyladenosine transferase [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292020|gb|AGB17842.1| dimethyladenosine transferase [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 272
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 96/171 (56%), Gaps = 9/171 (5%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
KG +K LGQ+++ + I ++A A + + D V+EIG G G+LT ++ V+A E
Sbjct: 4 KGFNTKKKLGQNFIFDEGILSKIADLADITKADNVIEIGAGLGTLTREIVERAKNVVAYE 63
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D VG++R++ L +L +D +K ++ + F+ K KVVAN+P+ I+
Sbjct: 64 IDDEAVGILRDKLREYKNLIILNDDIMKADLKGVVDKYFDGDK-----CKVVANLPYYIT 118
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+ +I +LL + ++ +L+Q+E A R+ EP + EY + + VN+YS
Sbjct: 119 SPIIMKLLE-SHLMKDITILIQKEVAERICAEPG--SKEYGVLTVAVNYYS 166
>gi|154482621|ref|ZP_02025069.1| hypothetical protein EUBVEN_00288 [Eubacterium ventriosum ATCC
27560]
gi|149736521|gb|EDM52407.1| dimethyladenosine transferase [Eubacterium ventriosum ATCC 27560]
Length = 288
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 99/178 (55%), Gaps = 6/178 (3%)
Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
AT + +N +K GQ+++++S + + + A + + D VLEIGPG G++T L A
Sbjct: 9 ATKEIINKYSFAFQKKFGQNFLIDSNVLESIIRGAEITKDDFVLEIGPGIGTMTQYLCEA 68
Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
V+A+E D+ ++ ++ + + D ++V+ +D +K I+S K++ KVV
Sbjct: 69 ARQVVAVEIDKMLIPILEDTLSEYDNVEVINQDVLKVDIKS-----LAEEKNNGKPIKVV 123
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
AN+P+ I+T +I L G + +++Q+E A R+ + + +Y +++ V +Y+
Sbjct: 124 ANLPYYITTPIIMGLFESGVPIDSITIMVQKEVADRM-QTGPGSKDYGALSLAVQYYA 180
>gi|319946185|ref|ZP_08020425.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641]
gi|417919676|ref|ZP_12563204.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641]
gi|319747567|gb|EFV99820.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641]
gi|342832304|gb|EGU66603.1| dimethyladenosine transferase [Streptococcus australis ATCC 700641]
Length = 291
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGALSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|418145152|ref|ZP_12781944.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13494]
gi|353804867|gb|EHD85146.1| dimethyladenosine transferase [Streptococcus pneumoniae GA13494]
Length = 279
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 10 KKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAAQVMAFEIDHRL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D + V+ ED +K + H+ + K+ + KVVAN+P+ I+T ++
Sbjct: 70 VPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPIKVVANLPYYITTPILM 125
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ G F E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 126 HLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 168
>gi|150387987|ref|YP_001318036.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF]
gi|166987687|sp|A6TJK9.1|RSMA_ALKMQ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|149947849|gb|ABR46377.1| dimethyladenosine transferase [Alkaliphilus metalliredigens QYMF]
Length = 287
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 99/175 (56%), Gaps = 7/175 (4%)
Query: 106 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
KA+ K +F KSLGQ+++++ I + + A +Q D V+EIGPG G+LT +
Sbjct: 11 KAIVEKYKFRFSKSLGQNFLIDQNILEDIVDGADIQPDDCVIEIGPGIGTLTQFIAEKAH 70
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V+AIE D++++ +++ A ++V+ +D +K + + FE + KV+AN
Sbjct: 71 KVVAIEIDRNLIPILKHTLADYQNVEVINQDVLKVDLHQLIADKFEGKP-----VKVIAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
+P+ ++T ++ + L +V+++Q+E A+R+ + T +Y ++I V +Y
Sbjct: 126 LPYYVTTPIVMRFLEEKVPVDSLVIMIQKEVAVRM-QAGPGTKDYGALSIAVQYY 179
>gi|238855589|ref|ZP_04645891.1| dimethyladenosine transferase [Lactobacillus jensenii 269-3]
gi|260664781|ref|ZP_05865632.1| dimethyladenosine transferase [Lactobacillus jensenii SJ-7A-US]
gi|238831806|gb|EEQ24141.1| dimethyladenosine transferase [Lactobacillus jensenii 269-3]
gi|260561264|gb|EEX27237.1| dimethyladenosine transferase [Lactobacillus jensenii SJ-7A-US]
Length = 294
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 14/171 (8%)
Query: 114 FPRKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
F +K+LGQ+++++ ++IND L AA + D VLEIGPG GSLT +L GA VLA E D
Sbjct: 23 FAKKNLGQNFLISLNKINDILDAAE-IDGDDQVLEIGPGIGSLTEQMLLRGAKVLAYEID 81
Query: 173 QHMVGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
Q + ++ D K++ +D +K ++ + + F+ K KVVAN+
Sbjct: 82 QDLPEILHNELPQKIGDKYLDDVFKLVMKDILKADFKADIGNFFDLNKP----VKVVANL 137
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
P+ I+T +I L F + L++Q+E A RL S EY P+ IFV
Sbjct: 138 PYYITTPIIFALAKSDLAFESLTLMMQKEVAERLCASS-GNKEYGPLTIFV 187
>gi|124087844|ref|XP_001346899.1| Ribosomal RNA adenine dimethylase [Paramecium tetraurelia strain
d4-2]
gi|145474821|ref|XP_001423433.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|50057288|emb|CAH03272.1| Ribosomal RNA adenine dimethylase, putative [Paramecium
tetraurelia]
gi|124390493|emb|CAK56035.1| unnamed protein product [Paramecium tetraurelia]
Length = 353
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH ++N +I + +A++ DIVLEIGPGTG+LT +LL V+ +E D MV
Sbjct: 14 KSFGQHILINQQILQMIVDKSAIRPTDIVLEIGPGTGNLTELLLQRAKQVICVEIDPRMV 73
Query: 177 GLVRERFA---SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ +RF D+ K++Q DF+ + F VAN+P+ IS+ +
Sbjct: 74 IELTKRFKYSQYSDKFKLIQGDFLTAEL--------------PFFDLCVANVPYQISSPL 119
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +LL ++ VL+ Q+E A RLV
Sbjct: 120 VFKLLAQRPLWRCAVLMFQQEFAFRLV 146
>gi|389857518|ref|YP_006359761.1| dimethyladenosine transferase [Streptococcus suis ST1]
gi|353741236|gb|AER22243.1| dimethyladenosine transferase [Streptococcus suis ST1]
Length = 290
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 65 AESAAEVMAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|15672672|ref|NP_266846.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
Il1403]
gi|281491189|ref|YP_003353169.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
KF147]
gi|385830227|ref|YP_005868040.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
CV56]
gi|418036990|ref|ZP_12675381.1| Methyltransferase [Lactococcus lactis subsp. cremoris CNCM I-1631]
gi|27151600|sp|Q9CHN8.1|RSMA_LACLA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|12723599|gb|AAK04788.1|AE006302_6 kasugamycin dimethyltransferase [Lactococcus lactis subsp. lactis
Il1403]
gi|281374930|gb|ADA64448.1| Dimethyladenosine transferase [Lactococcus lactis subsp. lactis
KF147]
gi|326406235|gb|ADZ63306.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
CV56]
gi|354695135|gb|EHE94757.1| Methyltransferase [Lactococcus lactis subsp. cremoris CNCM I-1631]
Length = 294
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITQTAELSKEVNVIEIGPGIGSLTQYLLEEAAEVMAFEIDKSL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++ D +K +LS ++ K+ + KVVAN+P+ I+T ++
Sbjct: 87 IPILEETMAPYDNFTLVSADILKV----DLLSEIQKFKNPNLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L+ FSE V+++Q+E A R+ S +T Y ++I V +Y
Sbjct: 143 HLIESKIPFSEFVVMMQKEVADRIAA-SPKTKAYGSLSIAVQYY 185
>gi|269120656|ref|YP_003308833.1| dimethyladenosine transferase [Sebaldella termitidis ATCC 33386]
gi|268614534|gb|ACZ08902.1| dimethyladenosine transferase [Sebaldella termitidis ATCC 33386]
Length = 276
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 92/164 (56%), Gaps = 13/164 (7%)
Query: 105 IKALNSKGRF---PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+K LN+ G +K GQ+++ N I +++ + A + + D V+EIGPG G LT L
Sbjct: 1 MKILNNTGEKNYRTKKKYGQNFLENKVILEEIFSYADINKTDTVIEIGPGLGFLTESLAE 60
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V A E D +V ++ E+F+ ++ LK++ DF+ + + E+ K+ KV
Sbjct: 61 KAGQVYAFEIDDDLVKILSEKFSKVENLKIIHTDFMDYDLS----EIVEKEKN----IKV 112
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL--VEPS 263
VANIP+ I++ ++ +L+ D E+ +++Q+E A R+ V PS
Sbjct: 113 VANIPYYITSPIVGKLIKYRDSIDEIYIMVQKEVAERISAVSPS 156
>gi|226500226|ref|NP_001150423.1| LOC100284053 [Zea mays]
gi|195639144|gb|ACG39040.1| dimethyladenosine transferase [Zea mays]
gi|413935817|gb|AFW70368.1| dimethyladenosine transferase [Zea mays]
Length = 354
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 83/164 (50%), Gaps = 19/164 (11%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H +G P KS GQH + N + D + A A ++ D VLEIGPGTG+LT LL
Sbjct: 11 HGAAGGARLQGGIPFEKSKGQHILRNPALVDSIVAKAGLKPTDTVLEIGPGTGNLTKRLL 70
Query: 161 NAGA-TVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216
AG V+A+E D MV + RF +LKV+Q D +KC +
Sbjct: 71 EAGVKAVVAVELDPRMVLELNRRFQGHPLSSRLKVIQGDVLKCDL--------------P 116
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
F VANIP+ IS+ + +LL IF V++ Q E A+RLV
Sbjct: 117 YFDICVANIPYQISSPLTFKLLSHRPIFRCAVIMFQREFAMRLV 160
>gi|145545245|ref|XP_001458307.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426126|emb|CAK90910.1| unnamed protein product [Paramecium tetraurelia]
Length = 353
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH ++N +I + +A++ DIVLEIGPGTG+LT +LL V+ +E D MV
Sbjct: 14 KSFGQHILINQQILQMIVDKSAIRPTDIVLEIGPGTGNLTELLLQRAKQVICVEIDPRMV 73
Query: 177 GLVRERFA---SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ +RF D+ K++Q DF+ + F VAN+P+ IS+ +
Sbjct: 74 IELTKRFKYSQYSDKFKLIQGDFLTAEL--------------PFFDLCVANVPYQISSPL 119
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +LL ++ VL+ Q+E A RLV
Sbjct: 120 VFKLLAQRPLWRCAVLMFQQEFAFRLV 146
>gi|397635583|gb|EJK71922.1| hypothetical protein THAOC_06596 [Thalassiosira oceanica]
Length = 340
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P SLGQH++ N + + A AA++ D VLEIGPGTG++T LL V+AIE D
Sbjct: 53 PNTSLGQHFLKNPAVVTAIVAKAAIKPTDSVLEIGPGTGNMTVPLLQQSKNVVAIEYDTR 112
Query: 175 MVGLVRERFASIDQ---LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
MV V +R + LKV+Q D +K F VAN+P+ IS+
Sbjct: 113 MVREVLKRVEGTSEERKLKVIQGDAIKTRF--------------PFFDVCVANVPYQISS 158
Query: 232 DVIKQLLPMGDIFSEVVLLLQEETALRL 259
++ +LL +F V++ QEE ALRL
Sbjct: 159 ALVFKLLSHRPMFRCSVMMFQEEFALRL 186
>gi|419799774|ref|ZP_14325098.1| dimethyladenosine transferase [Streptococcus parasanguinis F0449]
gi|385697157|gb|EIG27604.1| dimethyladenosine transferase [Streptococcus parasanguinis F0449]
Length = 291
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|359476860|ref|XP_002267827.2| PREDICTED: dimethyladenosine transferase-like [Vitis vinifera]
Length = 355
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 82/153 (53%), Gaps = 17/153 (11%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
K F KS GQH + N + D + + ++ D VLEIGPGTG+LT LL A V+A+E
Sbjct: 44 KHMFLYKSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQAAQRVVAVE 103
Query: 171 KDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
D MV ++R+R A DQL V+ +D +K F VVANIP+
Sbjct: 104 LDARMVEILRKRVAEHGLEDQLTVICKDALKTDF--------------PQFDLVVANIPY 149
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
IS+ ++ +L+ + F LLLQ+E A RL+
Sbjct: 150 GISSPLVAKLVFGANPFRSATLLLQKEFARRLL 182
>gi|337282765|ref|YP_004622236.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
15912]
gi|335370358|gb|AEH56308.1| dimethyladenosine transferase [Streptococcus parasanguinis ATCC
15912]
Length = 291
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|242060710|ref|XP_002451644.1| hypothetical protein SORBIDRAFT_04g005150 [Sorghum bicolor]
gi|241931475|gb|EES04620.1| hypothetical protein SORBIDRAFT_04g005150 [Sorghum bicolor]
Length = 359
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 79/148 (53%), Gaps = 18/148 (12%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHM 175
KS GQH + N + D + A A ++ D VLEIGPGTG+LT LL AG V+A+E D M
Sbjct: 32 KSKGQHILKNPALVDSIVAKAGLKPTDTVLEIGPGTGNLTKRLLEAGVKAVVAVELDPRM 91
Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
V + RF +LKV+Q D +KC + F VANIP+ IS+
Sbjct: 92 VLELNRRFQGHPLSSRLKVIQGDVLKCDL--------------PYFDICVANIPYQISSP 137
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +LL IF V++ Q E A+RLV
Sbjct: 138 LTFKLLSHRPIFRCAVIMFQREFAMRLV 165
>gi|414156318|ref|ZP_11412627.1| ribosomal RNA small subunit methyltransferase A [Streptococcus sp.
F0442]
gi|410872527|gb|EKS20471.1| ribosomal RNA small subunit methyltransferase A [Streptococcus sp.
F0442]
Length = 291
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|417917918|ref|ZP_12561475.1| dimethyladenosine transferase [Streptococcus parasanguinis SK236]
gi|342829739|gb|EGU64087.1| dimethyladenosine transferase [Streptococcus parasanguinis SK236]
Length = 291
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLNQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|374672734|dbj|BAL50625.1| dimethyladenosine transferase [Lactococcus lactis subsp. lactis
IO-1]
Length = 294
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITQTAELSKEVNVIEIGPGIGSLTQYLLEEAAEVMAFEIDKSL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++ D +K +LS ++ K+ + KVVAN+P+ I+T ++
Sbjct: 87 IPILEETMAPYDNFTLVSADILKV----DLLSEIQKFKNPNLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L+ FSE V+++Q+E A R+ S +T Y ++I V +Y
Sbjct: 143 HLIESKIPFSEFVVMMQKEVADRIAA-SPKTKAYGSLSIAVQYY 185
>gi|255560978|ref|XP_002521501.1| dimethyladenosine transferase, putative [Ricinus communis]
gi|223539179|gb|EEF40772.1| dimethyladenosine transferase, putative [Ricinus communis]
Length = 366
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 82/147 (55%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + +AV+ D VLEIGPGTG+LT LL V+A+E D+ MV
Sbjct: 55 KSKGQHLLTNPRVLDTIVRRSAVEPTDTVLEIGPGTGNLTLRLLEVARKVVAVEIDKRMV 114
Query: 177 GLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++RER + D+L ++ +D +K F VVANIP+ IS+ +
Sbjct: 115 EILRERASEQGLQDKLDIIHKDALKAEF--------------PNFNIVVANIPYGISSPL 160
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +L+ + F + LLLQ+E A RL+
Sbjct: 161 VTKLVYGVNKFRSLTLLLQKEFARRLL 187
>gi|383767126|ref|YP_005446107.1| ribosomal RNA small subunit methyltransferase A [Phycisphaera
mikurensis NBRC 102666]
gi|381387394|dbj|BAM04210.1| ribosomal RNA small subunit methyltransferase A [Phycisphaera
mikurensis NBRC 102666]
Length = 274
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L S+G P+ +LGQ+++ + ++ AA V GD VLE+GPGTG+LT LL+AGA V
Sbjct: 12 LASRGLRPKHALGQNFLHDGNHLRRIVEAAEVGSGDTVLEVGPGTGTLTGALLDAGAAVA 71
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D + G+V +RF +++ D C H L+ G K+VAN+P+
Sbjct: 72 AVELDDALAGIVADRFGERPGFSLVRGD---CLDGKHGLNPEMMSAVGDGPFKLVANLPY 128
Query: 228 NISTDVIKQLLP-MGDIFSEVVLLLQEETALRL 259
++ ++ L G S V++LQ+E A RL
Sbjct: 129 QAASPLLANLAGRAGRPMSLAVVMLQKEVADRL 161
>gi|312867557|ref|ZP_07727765.1| dimethyladenosine transferase [Streptococcus parasanguinis F0405]
gi|311096963|gb|EFQ55199.1| dimethyladenosine transferase [Streptococcus parasanguinis F0405]
Length = 291
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLREFDNVTVVNQDILKVDLNQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|427720873|ref|YP_007068867.1| dimethyladenosine transferase [Calothrix sp. PCC 7507]
gi|427353309|gb|AFY36033.1| dimethyladenosine transferase [Calothrix sp. PCC 7507]
Length = 272
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 86/150 (57%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PR+ QH++ + ++ D + AA D +LEIGPGTG LT LL +++A+E D+
Sbjct: 4 PRRHFAQHWLKSEKVLDAIVKAAGCTSDDRILEIGPGTGILTRRLLPLVQSLVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ S + + + +K + KVVANIP+NI+ +I
Sbjct: 64 LCQLLAKQLGKKENFLLLQGDFLTLDSPSQLTAFPKFQKQN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P + F +VLL+Q+E A RL
Sbjct: 120 EKLLGTISNPNLEPFDSIVLLVQKEVAERL 149
>gi|304315637|ref|YP_003850782.1| dimethyladenosine transferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777139|gb|ADL67698.1| dimethyladenosine transferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 272
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 96/171 (56%), Gaps = 9/171 (5%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
KG +K LGQ+++ + I ++A A + + D V+EIG G G+LT ++ V+A E
Sbjct: 4 KGFNTKKKLGQNFIFDEGILSKIADLADITKDDNVIEIGAGLGTLTREIVERAKNVVAYE 63
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D VG++R++ L +L +D +K ++ + F+ K KVVAN+P+ I+
Sbjct: 64 IDDEAVGILRDKLREYKNLIILNDDIMKADLKGVVDKYFDGDK-----CKVVANLPYYIT 118
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+ +I +LL + ++ +L+Q+E A R+ EP + EY + + VN+YS
Sbjct: 119 SPIIMKLLE-SHLMKDITILIQKEVAERICAEPG--SKEYGVLTVAVNYYS 166
>gi|62184932|ref|YP_219717.1| dimethyladenosine transferase [Chlamydophila abortus S26/3]
gi|81312896|sp|Q5L6H5.1|RSMA_CHLAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|62147999|emb|CAH63750.1| dimethyladenosine transferase [Chlamydophila abortus S26/3]
Length = 278
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 99/170 (58%), Gaps = 16/170 (9%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
GR P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EK
Sbjct: 18 GR-PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEK 76
Query: 172 DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
D ++ E ++ QL + E C L + + G +VVAN+P++I+T
Sbjct: 77 D----SMLEE---TLKQLPIHLEITDACKYPLSQL----QDQGWQGKGRVVANLPYHITT 125
Query: 232 DVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
++++L L + + V +++Q+E A R+ +P EY + IF+ F+
Sbjct: 126 PLLRKLFLEAPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFF 173
>gi|329117503|ref|ZP_08246220.1| dimethyladenosine transferase [Streptococcus parauberis NCFD 2020]
gi|333905922|ref|YP_004479793.1| dimethyladenosine transferase [Streptococcus parauberis KCTC 11537]
gi|326907908|gb|EGE54822.1| dimethyladenosine transferase [Streptococcus parauberis NCFD 2020]
gi|333121187|gb|AEF26121.1| dimethyladenosine transferase [Streptococcus parauberis KCTC 11537]
Length = 290
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY+ T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT +
Sbjct: 5 DYNVTRAILEHHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFI 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++++ D ++++ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILKDTLRDFDNVQLVNQDILKADLQTQIKAF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIDSKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|228476972|ref|ZP_04061610.1| dimethyladenosine transferase [Streptococcus salivarius SK126]
gi|228250991|gb|EEK10162.1| dimethyladenosine transferase [Streptococcus salivarius SK126]
Length = 290
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K +++ + K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILEDTLRDHDNVNVINEDVLKADLQTRVKEF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ + Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--SKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|304320043|ref|YP_003853686.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503]
gi|303298946|gb|ADM08545.1| dimethyladenosine transferase [Parvularcula bermudensis HTCC2503]
Length = 273
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 12/155 (7%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+ S G +K+LGQH++L+ I ++AA A+ G+ V+EIGPG G LT LL AGA +
Sbjct: 14 VRSHGLLAKKTLGQHFLLDMNITRKIAALCALSPGEDVIEIGPGPGGLTRALLEAGAALT 73
Query: 168 AIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
IE+D +V ++ E A+ QL L+ D + R+ M G + +N+P
Sbjct: 74 TIERDDRIVPILSEISAAFPGQLTPLEGDALSVDYRALM----------PGGGVIASNLP 123
Query: 227 FNISTDVIKQLLPMGD-IFSEVVLLLQEETALRLV 260
+NIST+++ + L + + +VL+ Q E R++
Sbjct: 124 YNISTELLVRWLTLSPRPWRRMVLMFQREVGDRIL 158
>gi|270290912|ref|ZP_06197136.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4]
gi|304386409|ref|ZP_07368742.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284]
gi|418068507|ref|ZP_12705789.1| dimethyladenosine transferase [Pediococcus acidilactici MA18/5M]
gi|427441756|ref|ZP_18925413.1| dimethyladenosine transferase [Pediococcus lolii NGRI 0510Q]
gi|270280972|gb|EFA26806.1| dimethyladenosine transferase [Pediococcus acidilactici 7_4]
gi|304327766|gb|EFL94993.1| dimethyladenosine transferase [Pediococcus acidilactici DSM 20284]
gi|357539243|gb|EHJ23262.1| dimethyladenosine transferase [Pediococcus acidilactici MA18/5M]
gi|425786945|dbj|GAC46201.1| dimethyladenosine transferase [Pediococcus lolii NGRI 0510Q]
Length = 297
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 96/172 (55%), Gaps = 7/172 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G +KSLGQ+++ + + + AA + +GD V+E+GPG GSLT + VL
Sbjct: 17 LEKYGLSAKKSLGQNFLTDPNVLVNIVDAAEINDGDDVIEVGPGIGSLTEQIAKRAHQVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E DQ+++ ++ E A D + ++ ED +K ++ + F+ + K+VAN+P+
Sbjct: 77 AFEIDQNLIPVLDETLAPYDNITIINEDVLKVNVNEVVAEHFDGQHP----IKLVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNF 278
I+T ++K + +++V+++Q+E A RL +P EY +++ V +
Sbjct: 133 YITTPILKSFMASSLPIAKMVVMMQKEVADRLTAQPG--DKEYGSLSVVVQY 182
>gi|456369696|gb|EMF48596.1| Dimethyladenosine transferase [Streptococcus parauberis KRS-02109]
Length = 290
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY+ T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT +
Sbjct: 5 DYNVTRAILEHHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFI 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++++ D ++++ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILKDTLRDFDNVQLVNQDILKADLQTQIKAF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIDSKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|410595144|ref|YP_006951871.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
agalactiae SA20-06]
gi|421531780|ref|ZP_15978159.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus agalactiae STIR-CD-17]
gi|403643110|gb|EJZ03902.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus agalactiae STIR-CD-17]
gi|410518783|gb|AFV72927.1| Ribosomal RNA small subunit methyltransferase A [Streptococcus
agalactiae SA20-06]
Length = 290
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 93/164 (56%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D ++V+ +D +K +++ + + K+ KVVAN+P+ I+T ++
Sbjct: 81 IPILADTLARFDNIQVVNQDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R + T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADR-ISAMPNTKAYGSLSIAVQYY 179
>gi|146319655|ref|YP_001199367.1| dimethyladenosine transferase [Streptococcus suis 05ZYH33]
gi|146321852|ref|YP_001201563.1| dimethyladenosine transferase [Streptococcus suis 98HAH33]
gi|386578809|ref|YP_006075215.1| Dimethyladenosine transferase [Streptococcus suis GZ1]
gi|145690461|gb|ABP90967.1| Dimethyladenosine transferase [Streptococcus suis 05ZYH33]
gi|145692658|gb|ABP93163.1| Dimethyladenosine transferase [Streptococcus suis 98HAH33]
gi|292559272|gb|ADE32273.1| Dimethyladenosine transferase [Streptococcus suis GZ1]
Length = 302
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 17 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFL 76
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A VLA E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 77 AENAAEVLAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 132
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 133 KVVANLPYYITTSILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 190
Query: 279 Y 279
Y
Sbjct: 191 Y 191
>gi|119485101|ref|ZP_01619486.1| dimethyladenosine transferase [Lyngbya sp. PCC 8106]
gi|119457329|gb|EAW38454.1| dimethyladenosine transferase [Lyngbya sp. PCC 8106]
Length = 273
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
+PRK QH++ + +Q+ AA + D +LEIGPGTG LT LL TVLA+E D+
Sbjct: 3 YPRKQFAQHWLRSPTALNQIVNAAQLSTDDHLLEIGPGTGVLTERLLTLAQTVLAVEIDR 62
Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ + +F D +LQ D + + ++ + + KVVANIP+NI+ +
Sbjct: 63 DLCKKLVPKFGKRDNFLLLQGDILTLRLEDYLQDFPNFQNPN----KVVANIPYNITGPI 118
Query: 234 IKQLL-----PMGDIFSEVVLLLQEETALRLVE-PSLRT 266
+++LL P + +VLL+Q+E A RL P RT
Sbjct: 119 LEKLLGNIAQPNPQPYDLMVLLVQKEVAQRLCAGPGSRT 157
>gi|386859823|ref|YP_006272529.1| ribosomal RNA small subunit methyltransferase A [Borrelia
crocidurae str. Achema]
gi|384934704|gb|AFI31377.1| Ribosomal RNA small subunit methyltransferase A [Borrelia
crocidurae str. Achema]
Length = 274
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 85/154 (55%), Gaps = 12/154 (7%)
Query: 107 ALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATV 166
L +K PRK GQ+Y++N I ++ A +++ + + EIGPG G++T LLN +
Sbjct: 14 VLKNKNIAPRKIWGQNYLINENIRAKIIDALDIKKNEKIWEIGPGLGAMTATLLNKANFL 73
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
A E D ++ E+F + K+++ DF+K + ++ + K+V+N+P
Sbjct: 74 TAFEIDPKYSEILNEKFGQLKNFKLIEGDFLKTY-----------KQEKTSINKIVSNLP 122
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
+NI++ VI L+ +I + +V +Q+E A R++
Sbjct: 123 YNIASKVISTLIE-DEILTHMVFTVQKELADRMI 155
>gi|375306195|ref|ZP_09771496.1| dimethyladenosine transferase [Paenibacillus sp. Aloe-11]
gi|375081782|gb|EHS59989.1| dimethyladenosine transferase [Paenibacillus sp. Aloe-11]
Length = 294
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 96/167 (57%), Gaps = 9/167 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ +AA + + LEIGPG G+LT L + V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILNKIVSAAGLDDTKGALEIGPGIGALTEKLAQSAKVVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++ E A + +KV D +K +R S F +G +K VVAN+P+ ++T +
Sbjct: 85 LPILEEVLAPYEHVKVRHGDVLKLDLREVFASDF------AGVSKVSVVANLPYYVTTPI 138
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+ +LL +V+++Q+E A R+ S T +Y ++I V +YS
Sbjct: 139 LMRLLEDKLPLENIVVMIQKEVAERMAA-SPGTKDYGSLSIAVQYYS 184
>gi|15618967|ref|NP_225253.1| dimethyladenosine transferase [Chlamydophila pneumoniae CWL029]
gi|15836590|ref|NP_301114.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138]
gi|16753057|ref|NP_445330.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39]
gi|27151618|sp|Q9Z6K0.1|RSMA_CHLPN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|4377394|gb|AAD19196.1| Dimethyladenosine Transferase [Chlamydophila pneumoniae CWL029]
gi|7189706|gb|AAF38590.1| dimethyladenosine transferase [Chlamydophila pneumoniae AR39]
gi|8979432|dbj|BAA99266.1| dimethyladenosine transferase [Chlamydophila pneumoniae J138]
Length = 277
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 96/168 (57%), Gaps = 15/168 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSL Q+++++ I ++ A + V D VLEIGPG G+LT L+ AGA V+AIEKD
Sbjct: 20 PKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQVIAIEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
S+++L + E C L ++ + G +VVAN+P++I+T ++
Sbjct: 80 FA-------PSLEELPIRLEIIDACKYPLDQLQEYK----TLGKGRVVANLPYHITTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
+L L D + V +++Q+E A R+V +P R +Y + IF+ F++
Sbjct: 129 TKLFLEAPDFWKTVTVMVQDEVARRIVAQPGGR--DYGSLTIFLQFFA 174
>gi|389571477|ref|ZP_10161572.1| dimethyladenosine transferase [Bacillus sp. M 2-6]
gi|388428877|gb|EIL86667.1| dimethyladenosine transferase [Bacillus sp. M 2-6]
Length = 292
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 94/166 (56%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A + + V+EIGPG G+LT L V A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEITDETGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K +R + E + + VVAN+P+ ++T +I
Sbjct: 83 LPILNDTLSPYDNVTIIHQDVLKADVR----KVIEEQFADCKEVMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ PS + EY ++I V FY+
Sbjct: 139 KLLEENLPLKGIVVMLQKEVADRMAAVPS--SKEYNSLSIAVQFYT 182
>gi|357144702|ref|XP_003573385.1| PREDICTED: probable dimethyladenosine transferase-like
[Brachypodium distachyon]
Length = 354
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 79/148 (53%), Gaps = 18/148 (12%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHM 175
KS GQH + N + D + A A ++ D VLEIGPGTG+LT LL AG V+A+E D M
Sbjct: 27 KSKGQHILKNPALVDSIIAKAGLKPTDTVLEIGPGTGNLTKRLLEAGVKAVVAVELDPRM 86
Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
V + RF +LKV+Q D +KC + F VANIP+ IS+
Sbjct: 87 VLELSRRFQGHPLSSRLKVIQGDVLKCDL--------------PYFDICVANIPYQISSP 132
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +LL IF V++ Q E A+RLV
Sbjct: 133 LTFKLLSHRPIFRCAVIMFQREFAMRLV 160
>gi|427414458|ref|ZP_18904648.1| dimethyladenosine transferase [Veillonella ratti ACS-216-V-Col6b]
gi|425714418|gb|EKU77423.1| dimethyladenosine transferase [Veillonella ratti ACS-216-V-Col6b]
Length = 286
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + D + AA + G+ VLEIGPG G+LT L + A V A+E D+ ++
Sbjct: 25 KKLGQNFLISRHVVDDIVKAAQLVPGEPVLEIGPGIGTLTQGLAQSKADVTAVELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ A D + ++ D +K +I M + F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLAGYDNVNIIHGDILKVNIPELM--------NHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL M +V+++Q+E A R+V EP T Y +++ V +Y+
Sbjct: 136 LLEMKLPIERLVVMVQKEVAERMVAEPG--TKAYGALSVAVQYYT 178
>gi|363814491|ref|NP_001242880.1| uncharacterized protein LOC100819707 [Glycine max]
gi|255636797|gb|ACU18732.1| unknown [Glycine max]
Length = 308
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + A V+ D++LEIGPGTG+LT LL AG V+AIE D MV
Sbjct: 30 KSKGQHILKNPLLVDSIVEKAGVKSTDVILEIGPGTGNLTKKLLEAGKKVIAIEIDPRMV 89
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ RF ++L V+Q D +K + F VANIP+ IS+ +
Sbjct: 90 LELQRRFQGTPHSNRLTVIQGDVLKTEL--------------PYFDICVANIPYQISSPL 135
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL F +++ Q E A+RLV
Sbjct: 136 TFKLLKHEPAFRAAIIMFQREFAMRLV 162
>gi|422885092|ref|ZP_16931540.1| dimethyladenosine transferase [Streptococcus sanguinis SK49]
gi|332358479|gb|EGJ36304.1| dimethyladenosine transferase [Streptococcus sanguinis SK49]
Length = 290
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAVEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|422824475|ref|ZP_16872662.1| dimethyladenosine transferase [Streptococcus sanguinis SK405]
gi|422825445|ref|ZP_16873624.1| dimethyladenosine transferase [Streptococcus sanguinis SK678]
gi|422856577|ref|ZP_16903233.1| dimethyladenosine transferase [Streptococcus sanguinis SK1]
gi|422863495|ref|ZP_16910126.1| dimethyladenosine transferase [Streptococcus sanguinis SK408]
gi|422872361|ref|ZP_16918854.1| dimethyladenosine transferase [Streptococcus sanguinis SK1087]
gi|324992524|gb|EGC24445.1| dimethyladenosine transferase [Streptococcus sanguinis SK405]
gi|324995947|gb|EGC27858.1| dimethyladenosine transferase [Streptococcus sanguinis SK678]
gi|327460748|gb|EGF07083.1| dimethyladenosine transferase [Streptococcus sanguinis SK1]
gi|327472469|gb|EGF17900.1| dimethyladenosine transferase [Streptococcus sanguinis SK408]
gi|328944611|gb|EGG38772.1| dimethyladenosine transferase [Streptococcus sanguinis SK1087]
Length = 290
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESAVEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|33865586|ref|NP_897145.1| dimethyladenosine transferase [Synechococcus sp. WH 8102]
gi|62900567|sp|Q7U7D3.1|RSMA_SYNPX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|33632755|emb|CAE07567.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
sp. WH 8102]
Length = 302
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 15/155 (9%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAI 169
+G RK GQH++ + + D++ AAA +Q D VLE+GPG G+LT LL++ A V A+
Sbjct: 4 QGHQARKRFGQHWLKDQTVLDRIVAAADLQPSDRVLEVGPGRGALTERLLSSPAAAVQAV 63
Query: 170 EKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
E D+ +V +RERFA + + Q D +L L + + +KVVANIP+NI
Sbjct: 64 ELDRDLVDGLRERFAGDPRFSLRQGD---------VLELPLQLEDGVAASKVVANIPYNI 114
Query: 230 STDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
+ ++ +L+ P+ + +VLL+Q++ A R+
Sbjct: 115 TGPLLDRLVGRLDRPVEPPYQRLVLLVQKQVAERI 149
>gi|342218672|ref|ZP_08711280.1| dimethyladenosine transferase [Megasphaera sp. UPII 135-E]
gi|341589368|gb|EGS32649.1| dimethyladenosine transferase [Megasphaera sp. UPII 135-E]
Length = 283
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 96/165 (58%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ ++ Q+A AA +++GD VLEIGPG GSLT L GA V A+E D H++
Sbjct: 25 KKLGQNFLISPDVVHQIARAADLKDGDSVLEIGPGIGSLTQALAETGAFVHAVELDVHLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + A D ++++ D +K I L + ++ + V AN+P+ I+T +I Q
Sbjct: 85 PVLAKTLAHYDNVEIIHGDILKISI----LDIVKKTPFT-----VCANLPYYITTPIIMQ 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
LL ++ ++Q+E A R+V P + Y +++ V +Y+
Sbjct: 136 LLESRLPIKRMIFMVQKEVAQRMVAVPGNKI--YGALSVAVQYYT 178
>gi|153854785|ref|ZP_01996019.1| hypothetical protein DORLON_02017 [Dorea longicatena DSM 13814]
gi|149752692|gb|EDM62623.1| dimethyladenosine transferase [Dorea longicatena DSM 13814]
Length = 292
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 99/177 (55%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ + D++ +A + E D+VLEIGPG G++T L A
Sbjct: 12 TIEVLQKYNFSFQKKFGQNFLIDTHVLDKIIQSANITEDDMVLEIGPGIGTMTQYLAQAA 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D++++ ++ + + D ++V+ ED +K ++ +++ KVVA
Sbjct: 72 GKVIAVEIDKNLIPILEDTLSGYDNVRVINEDVLKLDLKK-----LADEENNGKPVKVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ + +Y +++ V +Y+
Sbjct: 127 NLPYYITTPIIMGLFENEVPVESITVMVQKEVADRM-QTGPGNKDYGALSLAVQYYA 182
>gi|158425944|ref|YP_001527236.1| dimethyladenosine transferase [Azorhizobium caulinodans ORS 571]
gi|172047844|sp|A8HVI9.1|RSMA_AZOC5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|158332833|dbj|BAF90318.1| rRNA 16S rRNA dimethylase [Azorhizobium caulinodans ORS 571]
Length = 291
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 14/167 (8%)
Query: 99 DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
DD + + + G +KSLGQ+++L+ + ++A + EG V+E+GPG G LT
Sbjct: 5 DDLPPLREVIRAHGLSAQKSLGQNFLLDLNLTARIARGSGPLEGATVVEVGPGPGGLTRA 64
Query: 159 LLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216
LL GA V+AIE+D + + E A+ +L++++ D +K +R H+
Sbjct: 65 LLALGARKVIAIERDHRCIAALNEIAAAYPGRLEIIEGDALKVDVRPHL---------DG 115
Query: 217 GFAKVVANIPFNISTDVIKQLL---PMGDIFSEVVLLLQEETALRLV 260
A+VVAN+P+N+ T ++ L P FS + L+ Q E A R+V
Sbjct: 116 AEARVVANLPYNVGTQLLVGWLSTDPWPPWFSSLTLMFQREVAERIV 162
>gi|384173702|ref|YP_005555087.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349592926|gb|AEP89113.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 292
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A V + V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAEVTKKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + D + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYDNVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 182
>gi|310657782|ref|YP_003935503.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [[Clostridium]
sticklandii]
gi|308824560|emb|CBH20598.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [[Clostridium]
sticklandii]
Length = 289
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 99/180 (55%), Gaps = 9/180 (5%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + SK F KSLGQ+++++ + Q+ +A + D V+EIGPG G+LT L
Sbjct: 7 HKITKDIVSKYGFRFTKSLGQNFLVDEHVLSQIVDSAEIDSEDTVIEIGPGIGTLTRELS 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V++IE D++++ ++ E A D +K++ +D +K + + RK K
Sbjct: 67 YRAKQVISIEIDKNLIPILSETLADRDNIKIINQDILKTDLHELVNEFSPDRK-----VK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
VVAN+P+ I+T +I + L +V+++Q+E A R+ PS T +Y +++ V +Y
Sbjct: 122 VVANLPYYITTPIIMRFLEEKVPLKTMVIMIQKEVANRINAVPS--TKDYGSLSVAVQYY 179
>gi|387784913|ref|YP_006070996.1| dimethyladenosine transferase [Streptococcus salivarius JIM8777]
gi|338745795|emb|CCB96161.1| dimethyladenosine transferase (S-adenosylmethionine-6-N ,
N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Streptococcus
salivarius JIM8777]
Length = 290
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K +++ + K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILEDTLRDHDNVNVINEDVLKADLQTRVNEF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ + Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--SKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|291521141|emb|CBK79434.1| dimethyladenosine transferase [Coprococcus catus GD/7]
Length = 287
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 95/165 (57%), Gaps = 6/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + D++ A A V + D+VLEIGPG G++T L A V+A+E D+++
Sbjct: 22 QKKFGQNFLIDGHVLDKIIAGAGVTKDDMVLEIGPGIGTMTQYLAEAAGKVVAVEIDRNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A D +KV+ D + + + + ++ KVVAN+P+ I+T +I
Sbjct: 82 LPILQETLADYDNVKVIHADVLSLDLEKLV-----QEENGGRPIKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L + V +++Q+E A R+ + + +Y +++ V +Y+
Sbjct: 137 ALFEQHVPLANVTVMVQKEVAARM-KSGPGSKDYGALSLAVQYYA 180
>gi|429205545|ref|ZP_19196817.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
saerimneri 30a]
gi|428146156|gb|EKW98400.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
saerimneri 30a]
Length = 297
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 96/171 (56%), Gaps = 5/171 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+ + G +KSLGQ+++ + I ++ +A + D V+EIGPG G+LT L VL
Sbjct: 17 MEAYGLHFKKSLGQNFLTDINILRKIVTSAEITTADDVIEIGPGIGALTEQLAQNAHQVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E DQ ++ ++ E A D + V+ +D ++ + + + F + KVVAN+P+
Sbjct: 77 ALEIDQRLIPVLGETLAPYDNVTVVNQDVLQADLSQLVATHFTGDRP----LKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
I+T +I LL G ++V+++Q+E A RL + +T +Y +++ V +
Sbjct: 133 YITTKIIMNLLDSGVALDKIVIMVQKEVADRLAA-TPQTKDYGSLSVAVQY 182
>gi|357639797|ref|ZP_09137670.1| dimethyladenosine transferase [Streptococcus urinalis 2285-97]
gi|418417109|ref|ZP_12990307.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
urinalis FB127-CNA-2]
gi|357588251|gb|EHJ57659.1| dimethyladenosine transferase [Streptococcus urinalis 2285-97]
gi|410873165|gb|EKS21101.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
urinalis FB127-CNA-2]
Length = 290
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + VLEIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKRVNVLEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D ++++ +D +K +++ + +R K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILEDTLGHFDNVQIVNQDILKADLQTQL----KRFKNPDLPL 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSE-YRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q+E A R+ +L S+ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKVPFQEFVVMMQKEVADRI--SALPNSKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|253752653|ref|YP_003025794.1| dimethyladenosine transferase [Streptococcus suis SC84]
gi|253754479|ref|YP_003027620.1| dimethyladenosine transferase [Streptococcus suis P1/7]
gi|253756412|ref|YP_003029552.1| dimethyladenosine transferase [Streptococcus suis BM407]
gi|386582961|ref|YP_006079365.1| dimethyladenosine transferase [Streptococcus suis SS12]
gi|386589082|ref|YP_006085483.1| dimethyladenosine transferase [Streptococcus suis A7]
gi|403062417|ref|YP_006650633.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Streptococcus
suis S735]
gi|251816942|emb|CAZ52591.1| dimethyladenosine transferase [Streptococcus suis SC84]
gi|251818876|emb|CAZ56719.1| dimethyladenosine transferase [Streptococcus suis BM407]
gi|251820725|emb|CAR47487.1| dimethyladenosine transferase [Streptococcus suis P1/7]
gi|353735107|gb|AER16117.1| dimethyladenosine transferase [Streptococcus suis SS12]
gi|354986243|gb|AER45141.1| dimethyladenosine transferase [Streptococcus suis A7]
gi|402809743|gb|AFR01235.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus suis S735]
Length = 290
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A VLA E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 65 AENAAEVLAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTSILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|457094547|gb|EMG25066.1| Dimethyladenosine transferase [Streptococcus parauberis KRS-02083]
Length = 290
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY+ T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT +
Sbjct: 5 DYNVTRAILEHHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFI 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++++ D ++++ +D +K + + + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILKDTLRDFDNVQLVNQDILKADLETQIKAF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIDSKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|67923799|ref|ZP_00517261.1| RRNA 16S rRNA dimethylase [Crocosphaera watsonii WH 8501]
gi|416399871|ref|ZP_11687001.1| Dimethyladenosine transferase [Crocosphaera watsonii WH 0003]
gi|67854342|gb|EAM49639.1| RRNA 16S rRNA dimethylase [Crocosphaera watsonii WH 8501]
gi|357262340|gb|EHJ11488.1| Dimethyladenosine transferase [Crocosphaera watsonii WH 0003]
Length = 271
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 9/151 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + +Q+ AA ++ D +LEIGPGTG LT LL +VLA+E D
Sbjct: 4 PRKRFAQHWLRSETALEQIIQAANLKNSDRLLEIGPGTGILTRRLLPLVDSVLAVELDWD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + F + D +LQ D +K I + KVVANIP+NI++ ++
Sbjct: 64 LCKKLVKSFGNYDNFLLLQGDILKLDITTEAQDF----PKFLPINKVVANIPYNITSPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV 260
++LL P + +VLL+Q+E A R+V
Sbjct: 120 EKLLGRISSPKTPFYDLIVLLIQKEVAQRIV 150
>gi|313889811|ref|ZP_07823453.1| dimethyladenosine transferase [Streptococcus pseudoporcinus SPIN
20026]
gi|416852671|ref|ZP_11909816.1| dimethyladenosine transferase [Streptococcus pseudoporcinus LQ
940-04]
gi|313121856|gb|EFR44953.1| dimethyladenosine transferase [Streptococcus pseudoporcinus SPIN
20026]
gi|356740160|gb|EHI65392.1| dimethyladenosine transferase [Streptococcus pseudoporcinus LQ
940-04]
Length = 290
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTARIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ E D ++V+ +D +K +++ + K+
Sbjct: 65 AEQAAEVMAFEIDDRLLPILAETLRDFDNIRVINQDILKADLQTQIQGF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAKPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|15226591|ref|NP_182264.1| dimethyladenosine transferase [Arabidopsis thaliana]
gi|2529685|gb|AAC62868.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
gi|14532650|gb|AAK64053.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
gi|21280901|gb|AAM44912.1| putative dimethyladenosine transferase [Arabidopsis thaliana]
gi|330255745|gb|AEC10839.1| dimethyladenosine transferase [Arabidopsis thaliana]
Length = 353
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 79/147 (53%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + A ++ D++LEIGPGTG+LT LL AG V+A+E D MV
Sbjct: 30 KSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKEVIAVELDSRMV 89
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ RF ++LKV+Q D +K + F VANIP+ IS+ +
Sbjct: 90 LELQRRFQGTPFSNRLKVIQGDVLKTEL--------------PRFDICVANIPYQISSPL 135
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL F V++ Q E A+RLV
Sbjct: 136 TFKLLFHPTSFRCAVIMYQREFAMRLV 162
>gi|121997814|ref|YP_001002601.1| dimethyladenosine transferase [Halorhodospira halophila SL1]
gi|166221671|sp|A1WVT7.1|RSMA_HALHL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|121589219|gb|ABM61799.1| dimethyladenosine transferase [Halorhodospira halophila SL1]
Length = 265
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 10/149 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+++ + + ++ A A +EG+ +LEIGPG G+LT LL T+ A+E D+
Sbjct: 5 PRKRFGQNFLRDPAVIQRMVTAIAPREGETLLEIGPGEGALTEPLLARLGTLTAVELDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ERFA L+V++ D + + G +VV N+P+N+ST ++
Sbjct: 65 LAPRLQERFAP--ALRVIEGDALALDPAEL--------APAQGRLRVVGNLPYNVSTPIL 114
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPS 263
LL D+ ++ LLLQ E R+V P
Sbjct: 115 FHLLAAADVIEDLHLLLQREVVDRMVAPP 143
>gi|16077110|ref|NP_387923.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221307851|ref|ZP_03589698.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221312173|ref|ZP_03593978.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221317106|ref|ZP_03598400.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221321369|ref|ZP_03602663.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. SMY]
gi|402774285|ref|YP_006628229.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
QB928]
gi|418030613|ref|ZP_12669098.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|428277456|ref|YP_005559191.1| dimethyladenosine transferase [Bacillus subtilis subsp. natto
BEST195]
gi|452912626|ref|ZP_21961254.1| dimethyladenosine transferase [Bacillus subtilis MB73/2]
gi|585375|sp|P37468.1|RSMA_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|467431|dbj|BAA05277.1| high level kasgamycin resistance [Bacillus subtilis]
gi|2632309|emb|CAB11818.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
subsp. subtilis str. 168]
gi|291482413|dbj|BAI83488.1| dimethyladenosine transferase [Bacillus subtilis subsp. natto
BEST195]
gi|351471672|gb|EHA31785.1| dimethyladenosine transferase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402479471|gb|AFQ55980.1| Dimethyladenosine 16S ribosomal RNA transferase [Bacillus subtilis
QB928]
gi|407955733|dbj|BAM48973.1| dimethyladenosine transferase [Bacillus subtilis BEST7613]
gi|407963004|dbj|BAM56243.1| dimethyladenosine transferase [Bacillus subtilis BEST7003]
gi|452117654|gb|EME08048.1| dimethyladenosine transferase [Bacillus subtilis MB73/2]
Length = 292
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + + + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYENVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 182
>gi|417787210|ref|ZP_12434893.1| dimethyladenosine transferase [Lactobacillus salivarius NIAS840]
gi|417809172|ref|ZP_12455854.1| dimethyladenosine transferase [Lactobacillus salivarius GJ-24]
gi|334307387|gb|EGL98373.1| dimethyladenosine transferase [Lactobacillus salivarius NIAS840]
gi|335351128|gb|EGM52622.1| dimethyladenosine transferase [Lactobacillus salivarius GJ-24]
Length = 297
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AAA V E D V+EIGPG G+LT L V+A+E D +
Sbjct: 27 KKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++V+ +D +K +++ + FE + K+VAN+P+ I+T ++
Sbjct: 87 LPVLADTLSPYENVEVIHQDILKADLKALIAEHFE----TGHKLKLVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL G F +V+++Q+E A RL
Sbjct: 143 HLLDSGIEFETIVVMMQKEVAERL 166
>gi|300172804|ref|YP_003771969.1| dimethyladenosine transferase [Leuconostoc gasicomitatum LMG 18811]
gi|299887182|emb|CBL91150.1| Dimethyladenosine transferase [Leuconostoc gasicomitatum LMG 18811]
Length = 295
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 5/174 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN+ G +K GQ+++ + ++ + A + D V+EIGPG GSLT + A VL
Sbjct: 17 LNAYGLHAKKKFGQNFLTDLDVLHGIVDTADITNEDYVIEIGPGIGSLTEQIARAAKKVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ E D +KV+ D ++ ++ + F + KVVAN+P+
Sbjct: 77 AFEIDTQMVKVLGETLKDYDNVKVISGDILEMNLPQIITEEF----GETAHVKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG 281
I+T ++ QLL + +V+++Q E A RL + T Y + + V +++
Sbjct: 133 YITTPILMQLLRTNITWDNIVVMMQREVADRL-NAEVGTKAYGVLTLTVQYFAN 185
>gi|88808454|ref|ZP_01123964.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
sp. WH 7805]
gi|88787442|gb|EAR18599.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
sp. WH 7805]
Length = 280
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 92/154 (59%), Gaps = 15/154 (9%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIE 170
G PRK GQH++ + + DQ+ A+ + D VLE+GPG G+LT LL + A V A+E
Sbjct: 5 GHSPRKRFGQHWLRDERVLDQILDASELGSDDRVLEVGPGRGALTQRLLASTAAAVHAVE 64
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D+ +V +++RFA Q + + D ++ L+L + ++++ KVVANIP+NI+
Sbjct: 65 LDRDLVAGLQDRFADSPQFSLREGDVLEVP-----LTLPDGQRAT----KVVANIPYNIT 115
Query: 231 TDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
++++L+ P+ + +VLL+Q+E A R+
Sbjct: 116 GPLLERLIGRLDQPIDPPYQRLVLLVQKEVAERI 149
>gi|76787342|ref|YP_330398.1| dimethyladenosine transferase [Streptococcus agalactiae A909]
gi|77406268|ref|ZP_00783335.1| dimethyladenosine transferase [Streptococcus agalactiae H36B]
gi|406710172|ref|YP_006764898.1| dimethyladenosine transferase [Streptococcus agalactiae
GD201008-001]
gi|424048759|ref|ZP_17786310.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus agalactiae ZQ0910]
gi|119365850|sp|Q3JZA5.1|RSMA_STRA1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|76562399|gb|ABA44983.1| dimethyladenosine transferase [Streptococcus agalactiae A909]
gi|77175121|gb|EAO77923.1| dimethyladenosine transferase [Streptococcus agalactiae H36B]
gi|389649780|gb|EIM71255.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus agalactiae ZQ0910]
gi|406651057|gb|AFS46458.1| dimethyladenosine transferase [Streptococcus agalactiae
GD201008-001]
Length = 290
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 93/164 (56%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D ++V+ +D +K +++ + + K+ KVVAN+P+ I+T ++
Sbjct: 81 IPILADTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R + T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADR-ISAMPNTKAYGSLSIAVQYY 179
>gi|218249123|ref|YP_002374494.1| dimethyladenosine transferase [Cyanothece sp. PCC 8801]
gi|226729777|sp|B7JWJ7.1|RSMA_CYAP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|218169601|gb|ACK68338.1| dimethyladenosine transferase [Cyanothece sp. PCC 8801]
Length = 272
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 9/151 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + DQ+ AA + D+VLEIGPGTG LT LL +++A+E D+
Sbjct: 4 PRKRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPLVQSIVAVELDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + F + + +L+ D + + + + E+ KVVANIP+NI++ ++
Sbjct: 64 LCYRLAKSFGNFNHFLLLEGDILSLDLTTQL----EQFPQFQPINKVVANIPYNITSPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV 260
++LL P + +VLL+Q+E A R+V
Sbjct: 120 EKLLGSIAHPQHPSYELIVLLMQKEVAQRIV 150
>gi|77409014|ref|ZP_00785733.1| dimethyladenosine transferase [Streptococcus agalactiae COH1]
gi|421147909|ref|ZP_15607581.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus agalactiae GB00112]
gi|77172355|gb|EAO75505.1| dimethyladenosine transferase [Streptococcus agalactiae COH1]
gi|401685247|gb|EJS81255.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus agalactiae GB00112]
Length = 290
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 93/164 (56%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D ++V+ +D +K +++ + + K+ KVVAN+P+ I+T ++
Sbjct: 81 IPILADTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R + T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMIQKEVADR-ISAMPNTKAYGSLSIAVQYY 179
>gi|295115506|emb|CBL36353.1| dimethyladenosine transferase [butyrate-producing bacterium SM4/1]
Length = 310
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 97/180 (53%), Gaps = 8/180 (4%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
TI+ + G +K GQ+++++ + D++ AA V D+VLEIGPG G++T L
Sbjct: 32 QKTIQIIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMTQYLAE 91
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
+ V+A+E D +++ ++ E A D + V+ +D +K I+ L E KV
Sbjct: 92 SAKQVVAVEIDTNLIPILSETLAGYDNVTVINQDILKVDIK----KLAEEYNGGRPI-KV 146
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
VAN+P+ I+T +I L + +++Q+E A R+ V P + +Y +++ V +Y+
Sbjct: 147 VANLPYYITTPIIMGLFESSVPIDNITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYA 204
>gi|283797637|ref|ZP_06346790.1| dimethyladenosine transferase [Clostridium sp. M62/1]
gi|291074750|gb|EFE12114.1| dimethyladenosine transferase [Clostridium sp. M62/1]
Length = 310
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 97/180 (53%), Gaps = 8/180 (4%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
TI+ + G +K GQ+++++ + D++ AA V D+VLEIGPG G++T L
Sbjct: 32 QKTIQIIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMTQYLAE 91
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
+ V+A+E D +++ ++ E A D + V+ +D +K I+ L E KV
Sbjct: 92 SAKQVVAVEIDTNLIPILSETLAGYDNVTVINQDILKVDIK----KLAEEYNGGRPI-KV 146
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
VAN+P+ I+T +I L + +++Q+E A R+ V P + +Y +++ V +Y+
Sbjct: 147 VANLPYYITTPIIMGLFESSVPIDNITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYA 204
>gi|148242414|ref|YP_001227571.1| dimethyladenosine transferase [Synechococcus sp. RCC307]
gi|166221711|sp|A5GTK9.1|RSMA_SYNR3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|147850724|emb|CAK28218.1| Dimethyladenosine transferase [Synechococcus sp. RCC307]
Length = 274
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 91/154 (59%), Gaps = 15/154 (9%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIE 170
G RK GQH++ + + ++ AAAA+Q D VLE+GPG G+LT LL + A+V A+E
Sbjct: 5 GHHARKRFGQHWLKDESVLQRIVAAAALQPDDHVLEVGPGRGALTAQLLASPAASVQAVE 64
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D+ +V +++RFA+ + ++ D + L ERR + KVVANIP+NI+
Sbjct: 65 LDRDLVAGLQQRFAAEPRFQLQSGDVLAL----PQLGDGERRPT-----KVVANIPYNIT 115
Query: 231 TDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
++++L+ P+ + +VLL+Q+E A R+
Sbjct: 116 GPLLERLVGRLDRPVEPPYQRLVLLVQQEVARRI 149
>gi|417089858|ref|ZP_11955750.1| dimethyladenosine transferase [Streptococcus suis R61]
gi|353533799|gb|EHC03439.1| dimethyladenosine transferase [Streptococcus suis R61]
Length = 290
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|257062209|ref|YP_003140097.1| dimethyladenosine transferase [Cyanothece sp. PCC 8802]
gi|256592375|gb|ACV03262.1| dimethyladenosine transferase [Cyanothece sp. PCC 8802]
Length = 272
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 9/151 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + DQ+ AA + D+VLEIGPGTG LT LL +++A+E D+
Sbjct: 4 PRKRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPLVQSIVAVELDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + F + + +L+ D + + + + E+ KVVANIP+NI++ ++
Sbjct: 64 LCYRLAKSFGNFNHFLLLEGDILSLDLTTQL----EQFPQFQPINKVVANIPYNITSPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV 260
++LL P + +VLL+Q+E A R+V
Sbjct: 120 EKLLGSIAHPQHPSYELIVLLMQKEVAQRIV 150
>gi|374339957|ref|YP_005096693.1| dimethyladenosine transferase [Marinitoga piezophila KA3]
gi|372101491|gb|AEX85395.1| dimethyladenosine transferase [Marinitoga piezophila KA3]
Length = 269
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 14/164 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ SE ++ +V E D V+EIGPG G+LT + GA + A E D+ +
Sbjct: 15 KKSLGQNFLSTSEYAKKIVKKGSVTEEDTVIEIGPGAGTLTEEIAKTGAKLYAFEIDERL 74
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ ERF +++ DF+K +I S K +ANIP+ I++ +++
Sbjct: 75 KPLLLERFKEYQNVEIQFIDFLKANI------------SEIQKPKYIANIPYYITSPILE 122
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
++ F +L++Q+E R++ S + Y P++IFV F+
Sbjct: 123 KIFFETPDFQLALLMVQKEYGERMMAKSGKN--YSPLSIFVQFF 164
>gi|300864419|ref|ZP_07109290.1| dimethyladenosine transferase [Oscillatoria sp. PCC 6506]
gi|300337563|emb|CBN54438.1| dimethyladenosine transferase [Oscillatoria sp. PCC 6506]
Length = 281
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 10/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + +Q+ AA + + D VLEIGPGTG LT LL A +V+A+E D+
Sbjct: 6 PRKRFAQHWLKSEKALNQIVKAADLSQ-DRVLEIGPGTGILTRSLLPAAQSVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + ++ +D ++Q D + + L+ F + ++ + KVVANIP+NI+ +I
Sbjct: 65 LCEKLAKQLGKVDNFLLVQGDILAMDLEEQ-LAAFPKFQNPN---KVVANIPYNITGPII 120
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P F +VLL+Q+E A RL
Sbjct: 121 EKLLGKISAPAAKPFDLIVLLVQKEVAERL 150
>gi|326789765|ref|YP_004307586.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427]
gi|326540529|gb|ADZ82388.1| dimethyladenosine transferase [Clostridium lentocellum DSM 5427]
Length = 288
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%), Gaps = 9/177 (5%)
Query: 106 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
+A+ SK F +K GQ+++++ ++ D++ AA + + D V+EIGPG G +T LL
Sbjct: 11 RAIISKYPFAFQKKFGQNFLIDPQVLDKIIDAAEITKEDCVIEIGPGIGCVTQALLEKAG 70
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V++IE D ++ ++ E+F + K++ D +K L+ +S + KVVAN
Sbjct: 71 KVISIEIDNQLIPILEEQFGAEPHFKLIHNDVLKVD-----LAALIAEESPNRRIKVVAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+P+ I+T +I LL + +++Q+E A RL +P T +Y I + VN++S
Sbjct: 126 LPYYITTPIIMALLEDELPIESITVMVQKEVADRLSSKPG--TKQYGAIAVSVNYFS 180
>gi|22537918|ref|NP_688769.1| dimethyladenosine transferase [Streptococcus agalactiae 2603V/R]
gi|76798247|ref|ZP_00780496.1| dimethyladenosine transferase [Streptococcus agalactiae 18RS21]
gi|33516934|sp|Q8DXR8.1|RSMA_STRA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|22534816|gb|AAN00642.1|AE014272_13 dimethyladenosine transferase [Streptococcus agalactiae 2603V/R]
gi|76586400|gb|EAO62909.1| dimethyladenosine transferase [Streptococcus agalactiae 18RS21]
Length = 290
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 93/164 (56%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D ++V+ +D +K +++ + + K+ KVVAN+P+ I+T ++
Sbjct: 81 IPILADTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R + T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMIQKEVADR-ISAMPNTKAYGSLSIAVQYY 179
>gi|297824837|ref|XP_002880301.1| hypothetical protein ARALYDRAFT_904217 [Arabidopsis lyrata subsp.
lyrata]
gi|297326140|gb|EFH56560.1| hypothetical protein ARALYDRAFT_904217 [Arabidopsis lyrata subsp.
lyrata]
Length = 352
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 79/147 (53%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + A ++ D++LEIGPGTG+LT LL AG V+A+E D MV
Sbjct: 30 KSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKEVIAVELDSRMV 89
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ RF ++LKV+Q D +K + F VANIP+ IS+ +
Sbjct: 90 LELQRRFQGTPYSNRLKVIQGDVLKTEL--------------PRFDICVANIPYQISSPL 135
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL F V++ Q E A+RLV
Sbjct: 136 TFKLLFHPTSFRCAVIMYQREFAMRLV 162
>gi|406592147|ref|YP_006739327.1| dimethyladenosine transferase [Chlamydia psittaci CP3]
gi|407455135|ref|YP_006734026.1| dimethyladenosine transferase [Chlamydia psittaci GR9]
gi|407456511|ref|YP_006735084.1| dimethyladenosine transferase [Chlamydia psittaci VS225]
gi|407457867|ref|YP_006736172.1| dimethyladenosine transferase [Chlamydia psittaci WS/RT/E30]
gi|407460487|ref|YP_006738262.1| dimethyladenosine transferase [Chlamydia psittaci WC]
gi|410858279|ref|YP_006974219.1| dimethyladenosine transferase [Chlamydia psittaci 01DC12]
gi|449070955|ref|YP_007438035.1| dimethyladenosine transferase [Chlamydophila psittaci Mat116]
gi|405781678|gb|AFS20427.1| dimethyladenosine transferase [Chlamydia psittaci GR9]
gi|405783772|gb|AFS22519.1| dimethyladenosine transferase [Chlamydia psittaci VS225]
gi|405785543|gb|AFS24289.1| dimethyladenosine transferase [Chlamydia psittaci WS/RT/E30]
gi|405786660|gb|AFS25404.1| dimethyladenosine transferase [Chlamydia psittaci WC]
gi|405788019|gb|AFS26762.1| dimethyladenosine transferase [Chlamydia psittaci CP3]
gi|410811174|emb|CCO01819.1| dimethyladenosine transferase [Chlamydia psittaci 01DC12]
gi|449039463|gb|AGE74887.1| dimethyladenosine transferase [Chlamydophila psittaci Mat116]
Length = 278
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 15/167 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDP- 78
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E ++ QL + E C L + K G +VVAN+P++++T ++
Sbjct: 79 ---MFEE---TLKQLPIHLEITDACKYPLSQL----QDKGWQGKGRVVANLPYHVTTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
+L L + + + V +++Q+E A R+ +P EY + IF+ F+
Sbjct: 129 TKLFLEVPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFF 173
>gi|223934090|ref|ZP_03626038.1| dimethyladenosine transferase [Streptococcus suis 89/1591]
gi|386585035|ref|YP_006081438.1| dimethyladenosine transferase [Streptococcus suis D9]
gi|223897236|gb|EEF63649.1| dimethyladenosine transferase [Streptococcus suis 89/1591]
gi|353737181|gb|AER18190.1| dimethyladenosine transferase [Streptococcus suis D9]
Length = 290
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|255527800|ref|ZP_05394651.1| dimethyladenosine transferase [Clostridium carboxidivorans P7]
gi|255508513|gb|EET84902.1| dimethyladenosine transferase [Clostridium carboxidivorans P7]
Length = 278
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 91/164 (55%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ++++++ + + + V + D+V+EIGPG G+LT LL V AIE D ++
Sbjct: 19 KSLGQNFLIDNSVLQDIVDNSNVSKDDLVIEIGPGVGTLTKELLKKAKKVYAIELDSDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E + +++ +D +K L KS+ KVVAN+P+ ++T +I +
Sbjct: 79 PILNEELKEFNNFELVHKDALKVDFN----ELIGEEKST----KVVANLPYYVTTPIISK 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E R+ +PS T EY ++I V +Y
Sbjct: 131 LLKENYKFESLTIMIQKEVGERIAAKPS--TKEYGALSILVQYY 172
>gi|115481328|ref|NP_001064257.1| Os10g0183900 [Oryza sativa Japonica Group]
gi|110288720|gb|ABG65951.1| dimethyladenosine transferase, putative, expressed [Oryza sativa
Japonica Group]
gi|113638866|dbj|BAF26171.1| Os10g0183900 [Oryza sativa Japonica Group]
gi|215704636|dbj|BAG94264.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218184228|gb|EEC66655.1| hypothetical protein OsI_32926 [Oryza sativa Indica Group]
Length = 364
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 78/148 (52%), Gaps = 18/148 (12%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHM 175
KS GQH + N + D + A ++ D VLEIGPGTG+LT LL AG V+A+E D M
Sbjct: 36 KSKGQHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVELDPRM 95
Query: 176 VGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
V + RF +LKV+Q D +KC + F VANIP+ IS+
Sbjct: 96 VLELNRRFQGDPLASRLKVIQGDVLKCDL--------------PYFDICVANIPYQISSP 141
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +LL IF V++ Q E A+RLV
Sbjct: 142 LTFKLLSHRPIFRCAVIMFQREFAMRLV 169
>gi|404496164|ref|YP_006720270.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Geobacter
metallireducens GS-15]
gi|418065412|ref|ZP_12702785.1| dimethyladenosine transferase [Geobacter metallireducens RCH3]
gi|118600869|sp|Q39W34.1|RSMA_GEOMG RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|78193773|gb|ABB31540.1| 16S rRNA (6-N',N'-dimethyl-A1518,A1519)-dimethyltransferase
[Geobacter metallireducens GS-15]
gi|373562152|gb|EHP88369.1| dimethyladenosine transferase [Geobacter metallireducens RCH3]
Length = 275
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 99/172 (57%), Gaps = 7/172 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+ +G RK+LGQ+++++ + ++A ++ D +LE+GPG G+LT +L + A ++
Sbjct: 1 MRGEGIRARKALGQNFLVDRHVLARIADIVDMRPDDRILEVGPGKGALTEMLAHRCARLV 60
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D +V ++R+ F +++++ D ++ +R L +E KV AN+P+
Sbjct: 61 AVELDTRLVPVLRQAFRDNPRVEIVHGDILEIDLRD--LLAYE----GGERWKVAANLPY 114
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
NIST V+ L D+FS +VL+LQ+E RL S T +Y +++F +
Sbjct: 115 NISTPVLFAFLDNRDLFSRLVLMLQKEVGDRLAA-SPGTKDYGILSVFFQLH 165
>gi|332522163|ref|ZP_08398415.1| dimethyladenosine transferase [Streptococcus porcinus str.
Jelinkova 176]
gi|332313427|gb|EGJ26412.1| dimethyladenosine transferase [Streptococcus porcinus str.
Jelinkova 176]
Length = 290
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTARIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + FE +
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVINQDILKADLQTQIQG-FENPELP---I 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|329942659|ref|ZP_08291438.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10]
gi|332287254|ref|YP_004422155.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|384450406|ref|YP_005663006.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|384451407|ref|YP_005664005.1| dimethyladenosine transferase [Chlamydophila psittaci 01DC11]
gi|384452381|ref|YP_005664978.1| dimethyladenosine transferase [Chlamydophila psittaci 08DC60]
gi|384453356|ref|YP_005665952.1| dimethyladenosine transferase [Chlamydophila psittaci C19/98]
gi|384454335|ref|YP_005666930.1| dimethyladenosine transferase [Chlamydophila psittaci 02DC15]
gi|392376497|ref|YP_004064275.1| dimethyladenosine transferase [Chlamydophila psittaci RD1]
gi|407453815|ref|YP_006732923.1| dimethyladenosine transferase [Chlamydia psittaci 84/55]
gi|254574590|gb|ACT68006.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|313847840|emb|CBY16834.1| dimethyladenosine transferase [Chlamydophila psittaci RD1]
gi|325506928|gb|ADZ18566.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|328814919|gb|EGF84908.1| dimethyladenosine transferase [Chlamydophila psittaci Cal10]
gi|328914500|gb|AEB55333.1| dimethyladenosine transferase [Chlamydophila psittaci 6BC]
gi|334692137|gb|AEG85356.1| dimethyladenosine transferase [Chlamydophila psittaci C19/98]
gi|334693117|gb|AEG86335.1| dimethyladenosine transferase [Chlamydophila psittaci 01DC11]
gi|334694092|gb|AEG87309.1| dimethyladenosine transferase [Chlamydophila psittaci 02DC15]
gi|334695070|gb|AEG88286.1| dimethyladenosine transferase [Chlamydophila psittaci 08DC60]
gi|405780574|gb|AFS19324.1| dimethyladenosine transferase [Chlamydia psittaci 84/55]
Length = 278
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 15/167 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDP- 78
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E ++ QL + E C L + K G +VVAN+P++++T ++
Sbjct: 79 ---MFEE---TLKQLPIHLEITDACKYPLSQL----QDKGWQGKGRVVANLPYHVTTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+L L + + + V +++Q+E A R+ +P EY + IF+ F+
Sbjct: 129 TKLFLEVPNQWKTVTVMIQDEVARRIKAQPG--GKEYGSLTIFLQFF 173
>gi|408410474|ref|ZP_11181687.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
66c]
gi|408410695|ref|ZP_11181899.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
66c]
gi|407875161|emb|CCK83705.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
66c]
gi|407875382|emb|CCK83493.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
66c]
Length = 293
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ +A AA +QEGD V+EIGPG GSLT LL G V A E D +
Sbjct: 25 KKNLGQNFLVDLNAVQGIAEAAGIQEGDQVIEIGPGIGSLTEQLLLYGGKVFAYEVDDSL 84
Query: 176 VGLVRERFAS-ID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ ID + K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILETELPQRIDGEPLSSRFKLVLKDVLKANFAEDLAGFFDLTKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I LL G F+ + L++Q+E A RL + +Y P+ I V
Sbjct: 141 ITTPIIFSLLESGLNFTSLTLMMQKEVADRLAA-GPGSKDYGPLTIAV 187
>gi|302024552|ref|ZP_07249763.1| dimethyladenosine transferase [Streptococcus suis 05HAS68]
gi|330833629|ref|YP_004402454.1| dimethyladenosine transferase [Streptococcus suis ST3]
gi|329307852|gb|AEB82268.1| dimethyladenosine transferase [Streptococcus suis ST3]
Length = 290
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|224001108|ref|XP_002290226.1| dimethyladenosine transferase [Thalassiosira pseudonana CCMP1335]
gi|220973648|gb|EED91978.1| dimethyladenosine transferase [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 17/165 (10%)
Query: 98 DDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTN 157
+++ A++K+ + P SLGQH++ N + + A A ++ D +LEIGPGTG++T
Sbjct: 34 NNEGAASLKSAGTNLIAPNTSLGQHFLKNPAVVTAIVAKAGLKPTDSILEIGPGTGNMTV 93
Query: 158 VLLNAGATVLAIEKDQHMVGLVRERFASIDQ---LKVLQEDFVKCHIRSHMLSLFERRKS 214
LL +V+AIE D MV V +R + LKV+Q D +K
Sbjct: 94 PLLQQSKSVVAIEYDTRMVREVLKRVEGTSEERKLKVIQGDAIKTRF------------- 140
Query: 215 SSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
F VAN+P+ IS+ ++ +LL +F V++ QEE ALRL
Sbjct: 141 -PFFDVCVANVPYQISSALVFKLLSHRPMFRCAVMMFQEEFALRL 184
>gi|300814328|ref|ZP_07094600.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300511595|gb|EFK38823.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 288
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 97/164 (59%), Gaps = 9/164 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ I ++ +A V E D VLEIGPG G+LT L V++IE D+ +
Sbjct: 23 KTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGTLTEELALRAKKVVSIEIDKRLK 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
L+ E D +K++ +DF+K ++ +L + F KVVAN+P+ I+T +I++
Sbjct: 83 DLLEETLPY-DNVKIIYKDFLKLDLK----TLIDEEFKGQNF-KVVANLPYYITTPIIEK 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
LL + + +++Q+E A R +P +T +Y +++F+ F+
Sbjct: 137 LLLNSENIEIINVMIQKEVAKRFTAQP--QTKDYGSLSVFIQFF 178
>gi|255658924|ref|ZP_05404333.1| dimethyladenosine transferase [Mitsuokella multacida DSM 20544]
gi|260848874|gb|EEX68881.1| dimethyladenosine transferase [Mitsuokella multacida DSM 20544]
Length = 292
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 98/180 (54%), Gaps = 12/180 (6%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
T+ L + G K LGQ++++++ I + AA ++ GD VLEIGPG G+LT L
Sbjct: 17 EVTLHILKAFGLRMSKKLGQNFLIDARIVQGIVEAAEIEPGDRVLEIGPGIGTLTQGLAE 76
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
AGA V A+E D+ + +++E + D ++++ D +K +I M + F KV
Sbjct: 77 AGADVTAVELDKKLPTVLKETLKAYDNVRIVPGDILKVNIPEIM--------GDAPF-KV 127
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
AN+P+ I+T ++ LL + +V ++Q E A R+ +P R Y +++ V +Y+
Sbjct: 128 AANLPYYITTPILMTLLERRLPITHMVTMVQREVAERMTAKPGSRI--YGALSVAVQYYT 185
>gi|227824447|ref|ZP_03989279.1| dimethyladenosine transferase [Acidaminococcus sp. D21]
gi|352684421|ref|YP_004896406.1| dimethyladenosine transferase [Acidaminococcus intestini RyC-MR95]
gi|226904946|gb|EEH90864.1| dimethyladenosine transferase [Acidaminococcus sp. D21]
gi|350279076|gb|AEQ22266.1| dimethyladenosine transferase [Acidaminococcus intestini RyC-MR95]
Length = 287
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 93/174 (53%), Gaps = 12/174 (6%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L++ G +K GQ++++N + +A A + GD+VLE+GPG G+LT L GA V
Sbjct: 22 LDTFGLHTKKRFGQNFLINESVVRGIAEKAKIGPGDLVLEVGPGIGTLTQALAETGANVK 81
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
++E D+ ++ ++R+ D ++++ D +K ++ + V AN+P+
Sbjct: 82 SVEIDESLLPILRKTLEGYDNVEIIHGDILKVDLKDI---------TGGKPFTVAANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
I+T +I LL +V+++Q+E A R+ P T Y P+++ + +YS
Sbjct: 133 YITTPIIFSLLEANLPLKRIVVMVQKEVAERMAARPG--TKAYGPLSLALQYYS 184
>gi|323483571|ref|ZP_08088956.1| hypothetical protein HMPREF9474_00705 [Clostridium symbiosum
WAL-14163]
gi|323403127|gb|EGA95440.1| hypothetical protein HMPREF9474_00705 [Clostridium symbiosum
WAL-14163]
Length = 292
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + ++ AA V + D+VLEIGPG G++T L V+A+E D ++
Sbjct: 23 QKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMTQYLAENAGRVVAVEIDSNL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + V+ ED +K I + + KVVAN+P+ I+T +I
Sbjct: 83 IPILEETLKDYDNITVINEDILKLDINK-----LAQEYNGGRPIKVVANLPYYITTPIIM 137
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L G + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 138 GLFESGVPIDNITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 181
>gi|406593242|ref|YP_006740421.1| dimethyladenosine transferase [Chlamydia psittaci NJ1]
gi|405789114|gb|AFS27856.1| dimethyladenosine transferase [Chlamydia psittaci NJ1]
Length = 278
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 99/167 (59%), Gaps = 15/167 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDP- 78
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E ++ QL + E C + + L ++R G +VVAN+P++++T ++
Sbjct: 79 ---MFEE---TLKQLPIHLEITDAC--KYPLSQLQDKRWQGKG--RVVANLPYHVTTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
+L L + + + V +++Q+E A R+ +P EY + IF+ F+
Sbjct: 129 TKLFLEVPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFF 173
>gi|58336557|ref|YP_193142.1| dimethyladenosine transferase [Lactobacillus acidophilus NCFM]
gi|227903108|ref|ZP_04020913.1| dimethyladenosine transferase [Lactobacillus acidophilus ATCC 4796]
gi|62900454|sp|Q5FMG3.1|RSMA_LACAC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|58253874|gb|AAV42111.1| dimethyladenosine transferase [Lactobacillus acidophilus NCFM]
gi|227869094|gb|EEJ76515.1| dimethyladenosine transferase [Lactobacillus acidophilus ATCC 4796]
Length = 294
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA +Q GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQDAILGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K+L +D +K ++ + F+ ++ KVVAN+P+
Sbjct: 85 PEILHNELPKKIGEQSLNDRFKLLLKDVLKADFQNDLAGFFDMKQP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L FS + L++Q+E A RL E EY P+ I V
Sbjct: 141 ITTPIIFALSESDLHFSSLTLMMQKEVAERL-EAKPGNKEYGPLTISV 187
>gi|89898507|ref|YP_515617.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56]
gi|119365014|sp|Q253R6.1|RSMA_CHLFF RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|89331879|dbj|BAE81472.1| dimethyladenosine transferase [Chlamydophila felis Fe/C-56]
Length = 284
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 97/168 (57%), Gaps = 15/168 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 26 PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDP- 84
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E ++ QL + E C L + K G +VVAN+P++I+T ++
Sbjct: 85 ---MFEE---TLKQLPIDLEITDACKYPLSQL----QEKGWQGKGRVVANLPYHITTPLL 134
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
+L L + + + + +++Q+E A R+ +P EY + IF+ F++
Sbjct: 135 TKLFLEVPNQWKTITVMMQDEVARRITAQPG--GKEYGSLTIFLQFFA 180
>gi|355626639|ref|ZP_09048849.1| ribosomal RNA small subunit methyltransferase A [Clostridium sp.
7_3_54FAA]
gi|354820743|gb|EHF05150.1| ribosomal RNA small subunit methyltransferase A [Clostridium sp.
7_3_54FAA]
Length = 292
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + ++ AA V + D+VLEIGPG G++T L V+A+E D ++
Sbjct: 23 QKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMTQYLAENAGRVVAVEIDSNL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + V+ ED +K I + + KVVAN+P+ I+T +I
Sbjct: 83 IPILEETLKDYDNITVINEDILKLDINK-----LAQEYNGGRPIKVVANLPYYITTPIIM 137
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L G + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 138 GLFESGVPIDNITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 181
>gi|312871246|ref|ZP_07731344.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a]
gi|312872808|ref|ZP_07732873.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1]
gi|311091850|gb|EFQ50229.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2062A-h1]
gi|311093260|gb|EFQ51606.1| dimethyladenosine transferase [Lactobacillus iners LEAF 3008A-a]
Length = 295
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + S VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRPIS----VVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I +L+ S++ L++Q+E A R + S ++ Y P+ I V
Sbjct: 141 ITTPIILKLMHSPVKISQLTLMMQKEVAER-ISASHKSKAYGPLTIAV 187
>gi|334881255|emb|CCB82094.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
pentosus MP-10]
Length = 295
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 9/165 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VLA E D +
Sbjct: 25 KKSLGQNFLTDQNVLHNIVATADIGANDNVIEIGPGIGALTEYLARAAHHVLAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + V+ +D +K + + M+S E + F K+VAN+P+ I+T ++
Sbjct: 85 LPILDETLADYDNVTVVNQDILKADLAA-MIS--EHLDNERPF-KLVANLPYYITTPILM 140
Query: 236 QLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
LL GD+ F +V+++Q+E A RL EP T Y + I V +
Sbjct: 141 NLL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQY 182
>gi|282883264|ref|ZP_06291862.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B]
gi|281296894|gb|EFA89392.1| dimethyladenosine transferase [Peptoniphilus lacrimalis 315-B]
Length = 288
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 97/164 (59%), Gaps = 9/164 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ I ++ +A V E D VLEIGPG G+LT L V++IE D+ +
Sbjct: 23 KTLGQNFLIDGNIVRKIVDSAEVSEADNVLEIGPGIGTLTEELALRAKKVVSIEIDKRLE 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
L+ E D +K++ +DF+K ++ +L + F KVVAN+P+ I+T +I++
Sbjct: 83 DLLEETLPY-DNVKIIYKDFLKLDLK----TLIDEEFKGQNF-KVVANLPYYITTPIIEK 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
LL + + +++Q+E A R +P +T +Y +++F+ F+
Sbjct: 137 LLLNSENIEIINVMIQKEVAKRFTAQP--QTKDYGSLSVFIQFF 178
>gi|251794062|ref|YP_003008793.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2]
gi|247541688|gb|ACS98706.1| dimethyladenosine transferase [Paenibacillus sp. JDR-2]
Length = 298
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ +AA + + LEIGPG G+LT L A TV AIE D +
Sbjct: 29 KKSLGQNFLIDQNILHKIVSAAGLDKTKGALEIGPGIGALTQHLAAAAGTVTAIEIDNRL 88
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A + +KV+ D +K ++ LFE R + VVAN+P+ ++T ++
Sbjct: 89 IPILGDILAGEEHVKVVHGDVLKLDLK----KLFEERFADVAGVSVVANLPYYVTTPILM 144
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+LL +V+++Q+E A R+ +P EY +++ V +Y
Sbjct: 145 KLLEERLPLENIVVMIQKEVAERMAAKPG--GKEYGSLSVAVQYY 187
>gi|163814787|ref|ZP_02206176.1| hypothetical protein COPEUT_00938 [Coprococcus eutactus ATCC 27759]
gi|158450422|gb|EDP27417.1| dimethyladenosine transferase [Coprococcus eutactus ATCC 27759]
Length = 287
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 95/166 (57%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++S + +++ +AA + + D VLEIGPG G++T L + V+A+E D+++
Sbjct: 22 QKKFGQNFLIDSHVINKIISAADITKDDCVLEIGPGIGTMTQYLAESAGQVVAVEIDKNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + V+ +D +K I + E R KVVAN+P+ I+T +I
Sbjct: 82 LPILDETLAEYDNVTVINDDILKVDIN----KIVEERNGGRPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L V +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 137 GLFEKHVPLLSVTVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 180
>gi|427419540|ref|ZP_18909723.1| dimethyladenosine transferase [Leptolyngbya sp. PCC 7375]
gi|425762253|gb|EKV03106.1| dimethyladenosine transferase [Leptolyngbya sp. PCC 7375]
Length = 278
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 91/157 (57%), Gaps = 10/157 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + +I +Q+ AAA + + D VLEIGPG G LT L+ V+A+E D+
Sbjct: 4 PRKRFGQHWLRDPQILNQILAAAELSDTDRVLEIGPGQGVLTKGLVPFTQAVVAVEVDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+V ++++F + ++ +++ DF+ + + + + KVVANIP+ I+ ++
Sbjct: 64 LVRQLQQQFQASERFHLIEGDFLDVDLAAALAD----HPNFQSPNKVVANIPYYITGPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLR 265
++LL P + +VLL+Q+E A RL EP +
Sbjct: 120 EKLLGQIRQPNPQPYDSIVLLVQKEVADRLYAEPGTK 156
>gi|402835685|ref|ZP_10884248.1| dimethyladenosine transferase [Mogibacterium sp. CM50]
gi|402273967|gb|EJU23157.1| dimethyladenosine transferase [Mogibacterium sp. CM50]
Length = 306
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + + D + A + + E +V+E+GPG G+LT+ L+ V+AIE D ++
Sbjct: 41 KSLGQNFLNDQNVIDDIVAGSLIDEQTLVIEVGPGEGALTSELVEVAGYVIAIELDDRLI 100
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++R +FA D +V+ D +K I S + RK +VV N+P+ I+T +I +
Sbjct: 101 PILRTKFALHDNFEVIHGDILKADIESIVNDAM--RKHDLTRTRVVGNLPYYITTPIIIK 158
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLR 265
L+ F + +++Q+E RL+ EP +
Sbjct: 159 LIESKAEFESLTVMMQKEVGDRLLAEPGTK 188
>gi|325264298|ref|ZP_08131029.1| dimethyladenosine transferase [Clostridium sp. D5]
gi|324030369|gb|EGB91653.1| dimethyladenosine transferase [Clostridium sp. D5]
Length = 303
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ +A + D+VLEIGPG G++T L A V+A+E D+ +
Sbjct: 33 QKKFGQNFLIDTHVLDKIIRSAEISRDDMVLEIGPGIGTMTQYLACAAGKVIAVEIDRAL 92
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + VL ED +K I R++ KVVAN+P+ I+T +I
Sbjct: 93 IPILEDTLDGFDNVTVLNEDILKVDIAE-----LAERENGGRPIKVVANLPYYITTPIIM 147
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 148 GLFEKHVPVKSITVMVQKEVAERMQVGPG--TKDYGALSLAVQYYA 191
>gi|357040050|ref|ZP_09101840.1| Ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
gibsoniae DSM 7213]
gi|355357030|gb|EHG04809.1| Ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
gibsoniae DSM 7213]
Length = 290
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 104/186 (55%), Gaps = 19/186 (10%)
Query: 103 ATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+T++ L + +F +K LGQ+++++ I +++ AAA+ DIV+EIGPG G+LT L
Sbjct: 7 STVRDLLQRHQFRIKKKLGQNFLIDGNIINKILNAAALNNHDIVVEIGPGIGALTCRLAQ 66
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR------KSS 215
VLA+E D+ + L+ E +D + +++ D +K F+R +
Sbjct: 67 KARQVLAVEIDRTVFPLLAETLGELDNVTLVEADALKTD--------FDRLVQDAIGDPA 118
Query: 216 SGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINI 274
G+ KVVAN+P+ I+T +I LL ++V+++QEE A RL P+ T +Y + +
Sbjct: 119 CGY-KVVANLPYYITTPLIMHLLEECSYARKIVVMVQEEVARRLTALPN--TKDYGALTV 175
Query: 275 FVNFYS 280
N+Y+
Sbjct: 176 AANYYA 181
>gi|356548063|ref|XP_003542423.1| PREDICTED: probable dimethyladenosine transferase-like [Glycine
max]
Length = 352
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 78/147 (53%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + A V+ D++LEIGPGTG+LT LL AG V+A+E D MV
Sbjct: 30 KSKGQHILKNPLLVDSIVEKAGVKSTDVILEIGPGTGNLTKKLLEAGKKVIAVEIDPRMV 89
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ RF ++L V+Q D +K + F VANIP+ IS+ +
Sbjct: 90 LELQRRFQGTPHSNRLTVIQGDVLKTEL--------------PYFDICVANIPYQISSPL 135
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL F +++ Q E A+RLV
Sbjct: 136 TFKLLKHEPAFRAAIIMFQREFAMRLV 162
>gi|417003907|ref|ZP_11942793.1| dimethyladenosine transferase [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325478267|gb|EGC81386.1| dimethyladenosine transferase [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 280
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 96/169 (56%), Gaps = 8/169 (4%)
Query: 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172
RF KSLGQ+++++ D++ AA V G+ V+EIGPG G++T + V+AIE D
Sbjct: 20 RF-SKSLGQNFLVDKNFVDKIVDAADVS-GENVIEIGPGIGTITYEMAKVAKKVVAIEID 77
Query: 173 QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
++ ++ E D ++ ED +K + + F + F KVV+N+P+ I+T
Sbjct: 78 DSLIPIIEENMVEFDNFDLIHEDILKADLEKIVAEEF----AGESF-KVVSNLPYYITTP 132
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG 281
+I++L+ ++ +++Q+E A R++ + + EY +++FV +YS
Sbjct: 133 IIEKLVTSNLPCKDMTIMVQKEVADRML-ATEKDKEYSSLSVFVKYYSD 180
>gi|33242431|ref|NP_877372.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183]
gi|33236942|gb|AAP99029.1| dimethyladenosine transferase [Chlamydophila pneumoniae TW-183]
Length = 277
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 15/168 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSL Q+++++ I ++ A + V D VLEIGPG G+LT L+ AGA V+AIEKD
Sbjct: 20 PKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQVIAIEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
S+++L + E C L + ++ G +VVAN+P++I+T ++
Sbjct: 80 FA-------PSLEELPIRLEIIDACKYPLDQLQEY----TTLGKGRVVANLPYHITTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
+L L D + V +++Q+E A R+V +P + +Y + IF+ F++
Sbjct: 129 TKLFLEAPDFWKTVTVMVQDEVARRIVAQPGGK--DYGSLTIFLQFFA 174
>gi|414563213|ref|YP_006042174.1| dimethyladenosine transferase [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338846278|gb|AEJ24490.1| dimethyladenosine transferase [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 290
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 98/182 (53%), Gaps = 9/182 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
V+A E D+ +V ++ + D ++V+ +D +K +++ + ++ S
Sbjct: 65 AERATEVMAFEIDERLVPILADTLRDFDNVQVVNQDILKADLQTQL-----KQFSHPDLP 119
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVN 277
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V
Sbjct: 120 IKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQ 177
Query: 278 FY 279
+Y
Sbjct: 178 YY 179
>gi|295089979|emb|CBK76086.1| dimethyladenosine transferase [Clostridium cf. saccharolyticum K10]
Length = 310
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 97/180 (53%), Gaps = 8/180 (4%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
TI+ + G +K GQ+++++ + D++ AA V D+VLEIGPG G++T L
Sbjct: 32 QKTIQIIQKYGFAFQKKFGQNFLIDMHVLDKIIGAAGVTREDMVLEIGPGIGTMTQYLAE 91
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
+ V+A+E D +++ ++ E A D + V+ +D +K I+ L E KV
Sbjct: 92 SAKQVVAVEIDTNLIPILSETLAVYDNVTVINQDILKVDIK----KLAEEYNGGRPI-KV 146
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
VAN+P+ I+T +I L + +++Q+E A R+ V P + +Y +++ V +Y+
Sbjct: 147 VANLPYYITTPIIMGLFESSVPIDNITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYA 204
>gi|51894384|ref|YP_077075.1| dimethyladenosine transferase [Symbiobacterium thermophilum IAM
14863]
gi|62900510|sp|Q67JB9.1|RSMA_SYMTH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|51858073|dbj|BAD42231.1| dimethyladenosine transferase [Symbiobacterium thermophilum IAM
14863]
Length = 285
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 102/180 (56%), Gaps = 7/180 (3%)
Query: 103 ATIKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+KAL ++ G P+ LGQ+++++ + D + +AA ++ D+VLEIGPG G+LT L
Sbjct: 7 GALKALMAQYGLRPQHRLGQNFLIDGRVLDGIVSAAGLEPTDVVLEIGPGLGTLTQRLAA 66
Query: 162 AGATVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+ +E D+ +V ++ + + D ++V+ D + + L R + AK
Sbjct: 67 KAGRVVCVELDRGLVQVLHDTVQKAYDNVEVIHGDAGRIDLH----KLLGERLAPGQKAK 122
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
VVAN+P+ I+T ++ +LL S VV+++Q+E A R+V P + Y +++ V +Y+
Sbjct: 123 VVANLPYYITTPLVMRLLEEELPLSHVVVMVQKEVADRMVSPP-GSKAYGALSVAVQYYT 181
>gi|450161099|ref|ZP_21880365.1| dimethyladenosine transferase [Streptococcus mutans 66-2A]
gi|449239184|gb|EMC37913.1| dimethyladenosine transferase [Streptococcus mutans 66-2A]
Length = 291
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 99/184 (53%), Gaps = 13/184 (7%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T L+ G +K+ GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DKTVTRAILDRHGFTFKKTFGQNFLTDTNILQKIVDTAEIDKNTNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D +KV+ ED +K +++ R K S A
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNIKVVNEDILKSDLQT-------RIKEFSNPA 117
Query: 220 ---KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIF 275
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I
Sbjct: 118 LPIKVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIA 175
Query: 276 VNFY 279
V +Y
Sbjct: 176 VQYY 179
>gi|53805073|ref|YP_113120.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath]
gi|62900497|sp|Q60B77.1|RSMA_METCA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|53758834|gb|AAU93125.1| dimethyladenosine transferase [Methylococcus capsulatus str. Bath]
Length = 257
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 84/145 (57%), Gaps = 9/145 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+++ + + ++ AA D ++EIGPG G LT LL +GA + AIE D+
Sbjct: 5 PRKRFGQNFLRDPGVIQEIVAAVGPAPSDRLVEIGPGEGVLTRELLQSGACLEAIELDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+V ++ RFA + +L++ + D +K +R+ ++ ER +VV N+P+NIST ++
Sbjct: 65 LVAALKRRFAGVGRLRIHEGDAMKFDLRT--IATGER-------LRVVGNLPYNISTPLL 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
L D+ ++ +LQ+E RL
Sbjct: 116 FHLFDQIDVIEDMHFMLQKEVVDRL 140
>gi|381184430|ref|ZP_09893043.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Listeriaceae bacterium TTU M1-001]
gi|380315680|gb|EIA19186.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Listeriaceae bacterium TTU M1-001]
Length = 295
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++ I ++ A V E V+EIGPG G+LT L +
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDPNILRRIVTTAGVTEETNVIEIGPGIGALTEHLARSA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
VLA E D ++ ++ E + + ++++ D +K +R M E+ S K+VA
Sbjct: 71 NEVLAFEIDDRLLPILAETLSPYENVEIVHTDILKADVREVM---GEKFSSPEAPLKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
N+P+ ++T +I QLL S + +LQ+E A R+ +P T Y ++I + FY
Sbjct: 128 NLPYYVTTPIILQLLHEKVPASSMTFMLQKEVAERISAKPG--TKSYGSLSIAIQFY 182
>gi|227528872|ref|ZP_03958921.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540]
gi|227351195|gb|EEJ41486.1| dimethyladenosine transferase [Lactobacillus vaginalis ATCC 49540]
Length = 297
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + I ++ AA V + D V+EIGPG G+LT L A V+
Sbjct: 17 LNEYGLHAKKGFGQNFLTDPAILQRIVEAAEVTDADNVIEIGPGIGALTEKLAQAAGQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E DQ ++ ++ + A+ D + V+ +D ++ ++ + F + KVVAN+P+
Sbjct: 77 AVEIDQDLIPVLEKTLAAYDNVTVINQDILRANLPELIQQQF---TDPTKPIKVVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
I++ ++ LL +S + +++Q+E A RL
Sbjct: 134 YITSPILMNLLASPVEWSSITVMMQKEVAQRL 165
>gi|25011861|ref|NP_736256.1| dimethyladenosine transferase [Streptococcus agalactiae NEM316]
gi|77414160|ref|ZP_00790325.1| dimethyladenosine transferase [Streptococcus agalactiae 515]
gi|33516935|sp|Q8E3D7.1|RSMA_STRA3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|24413402|emb|CAD47481.1| Unknown [Streptococcus agalactiae NEM316]
gi|77159783|gb|EAO70929.1| dimethyladenosine transferase [Streptococcus agalactiae 515]
Length = 290
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D ++V+ +D +K +++ + + K+ KVVAN+P+ I+T ++
Sbjct: 81 IPILADTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q E A R + T Y ++I V +Y
Sbjct: 137 HLIEGKIPFAEFVVMMQREVADR-ISAMPNTKAYGSLSIAVQYY 179
>gi|125624667|ref|YP_001033150.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
MG1363]
gi|389855037|ref|YP_006357281.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124493475|emb|CAL98452.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071459|gb|ADJ60859.1| dimethyladenosine transferase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 294
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A + + V+EIGPG GSL+ LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITETADLSKEVNVIEIGPGIGSLSQYLLEEAAEVMAFEIDKSL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++ D +K +LS ++ K+ + KVVAN+P+ I+T ++
Sbjct: 87 IPILEETMAPYDNFTLVSADILKV----DLLSEIQKFKNPNLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L+ FSE V+++Q+E A R+ S +T Y ++I V +Y
Sbjct: 143 HLIESKIPFSEFVVMMQKEVADRIAA-SPKTKAYGSLSIAVQYY 185
>gi|323690920|ref|ZP_08105212.1| ribosomal RNA small subunit methyltransferase A [Clostridium
symbiosum WAL-14673]
gi|323505045|gb|EGB20815.1| ribosomal RNA small subunit methyltransferase A [Clostridium
symbiosum WAL-14673]
Length = 292
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + ++ AA V + D+VLEIGPG G++T L V+A+E D ++
Sbjct: 23 QKKFGQNFLIDTHVLSKIITAAGVTKDDMVLEIGPGIGTMTQYLAENAGRVVAVEIDSNL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + ++ ED +K I + + KVVAN+P+ I+T +I
Sbjct: 83 IPILEETLKDYDNITIINEDILKLDINK-----LAQEYNGGRPIKVVANLPYYITTPIIM 137
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L G + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 138 GLFESGVPIDNITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 181
>gi|374321382|ref|YP_005074511.1| dimethyladenosine transferase [Paenibacillus terrae HPL-003]
gi|357200391|gb|AET58288.1| dimethyladenosine transferase [Paenibacillus terrae HPL-003]
Length = 294
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 95/167 (56%), Gaps = 9/167 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ +A + E LEIGPG G+LT L + V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILNKIVNSAGLDETKGALEIGPGIGALTEKLAQSAKVVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++ E A + +KV D +K +R S F +G +K VVAN+P+ ++T +
Sbjct: 85 LPILEEVLAPYEHVKVRHGDVLKLDLREVFASDF------AGVSKVSVVANLPYYVTTPI 138
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+ +LL +V+++Q+E A R+ S T +Y ++I V +YS
Sbjct: 139 LMRLLEDKLPLENIVVMIQKEVAERMAA-SPGTKDYGSLSIAVQYYS 184
>gi|260589447|ref|ZP_05855360.1| dimethyladenosine transferase [Blautia hansenii DSM 20583]
gi|331084461|ref|ZP_08333563.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 6_1_63FAA]
gi|260540192|gb|EEX20761.1| dimethyladenosine transferase [Blautia hansenii DSM 20583]
gi|330401324|gb|EGG80911.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 289
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 100/179 (55%), Gaps = 10/179 (5%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ + D++ +AA + + D VLEIGPG G++T L A
Sbjct: 12 TIEVLQKYDFVFQKKFGQNFLIDTHVLDKIISAAEITKEDFVLEIGPGIGTMTQYLACAA 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D+ ++ ++ + + VL ED +K I+ ++ KVVA
Sbjct: 72 REVVAVEIDKALIPILEDTLQDYSNVTVLNEDILKVDIKK-----LADEHNNGKPIKVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSE-VVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L GD+ E + +++Q+E A R+ V P T EY +++ V +Y+
Sbjct: 127 NLPYYITTPIIMGLF-EGDVPIESITVMVQKEVADRMQVGPG--TKEYGALSLAVQYYA 182
>gi|154249153|ref|YP_001409978.1| dimethyladenosine transferase [Fervidobacterium nodosum Rt17-B1]
gi|154153089|gb|ABS60321.1| dimethyladenosine transferase [Fervidobacterium nodosum Rt17-B1]
Length = 261
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 15/147 (10%)
Query: 116 RKSLGQHYMLNSEIN-DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+KSLGQ++ L+SEI +++ + V++ D +LEIG G G+LT L GATV AIE D
Sbjct: 4 KKSLGQNF-LSSEIYAEKIVGLSNVEKNDTILEIGAGAGTLTVALAKTGATVFAIEIDNR 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
M +++ER D +K++ EDF++ I S + +G+ K ++NIP+ I+ ++
Sbjct: 63 MEPILKERLEKYDNVKIIFEDFLEMDI-SFL---------PNGY-KCISNIPYYITAPIL 111
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVE 261
K+LL FS + +++Q+E RL+E
Sbjct: 112 KKLLFTN--FSMLTIMMQKEVGERLLE 136
>gi|449881327|ref|ZP_21784395.1| dimethyladenosine transferase [Streptococcus mutans SA38]
gi|449926135|ref|ZP_21800607.1| dimethyladenosine transferase [Streptococcus mutans 4SM1]
gi|449160912|gb|EMB64142.1| dimethyladenosine transferase [Streptococcus mutans 4SM1]
gi|449251561|gb|EMC49571.1| dimethyladenosine transferase [Streptococcus mutans SA38]
Length = 291
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VSILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLLIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|407459112|ref|YP_006737215.1| dimethyladenosine transferase [Chlamydia psittaci M56]
gi|405786625|gb|AFS25370.1| dimethyladenosine transferase [Chlamydia psittaci M56]
Length = 278
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 15/167 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDP- 78
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E ++ QL + E C L + K G +VVAN+P++++T ++
Sbjct: 79 ---MFEE---TLKQLLIHLEITDACKYPLSQL----QDKGWQGKGRVVANLPYHVTTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
+L L + + + V +++Q+E A R+ +P EY + IF+ F+
Sbjct: 129 TKLFLEVPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFF 173
>gi|384449758|ref|YP_005662360.1| dimethyladenosine transferase [Chlamydophila pneumoniae LPCoLN]
gi|269302858|gb|ACZ32958.1| dimethyladenosine transferase [Chlamydophila pneumoniae LPCoLN]
Length = 277
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 95/168 (56%), Gaps = 15/168 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSL Q+++++ I ++ A + V D VLEIGPG G+LT L+ AGA V+AIEKD
Sbjct: 20 PKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQVIAIEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
S+++L + E C L ++ + G +VVAN+P++I+T ++
Sbjct: 80 FA-------PSLEELPIRLEIIDACKYPLDQLQEYK----TLGKGRVVANLPYHITTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
+L L D + V +++Q+E A R+V +P +Y + IF+ F++
Sbjct: 129 TKLFLEAPDFWKTVTVMVQDEVARRIVAQPG--GKDYGSLTIFLQFFA 174
>gi|404372839|ref|ZP_10978121.1| ribosomal RNA small subunit methyltransferase A [Clostridium sp.
7_2_43FAA]
gi|226914216|gb|EEH99417.1| ribosomal RNA small subunit methyltransferase A [Clostridium sp.
7_2_43FAA]
Length = 281
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + A A V E D+V+EIGPG G+LT LLN V+AIE D ++
Sbjct: 21 KSLGQNFLIDDSVPRDIVAGAEVDENDLVIEIGPGVGTLTAQLLNKAKKVVAIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + + ++ +D +K + + KS K+VAN+P+ ++T +I +
Sbjct: 81 PILNQEIGDNPKFTLIHKDALKVNFN----EIIGEEKS----VKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL G F + +++Q+E A R+ P +Y +++ V +Y
Sbjct: 133 LLKEGYNFKSLTIMIQKEVAERMNANPG--NKDYGSLSLLVQYY 174
>gi|390457070|ref|ZP_10242598.1| dimethyladenosine transferase [Paenibacillus peoriae KCTC 3763]
Length = 294
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 5/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ +AA + + LEIGPG G+LT L + V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILNKIVSAAGLDDTKGALEIGPGIGALTEKLAQSAKVVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A + +KV D +K +R S F S VVAN+P+ ++T ++
Sbjct: 85 LPILGEVLAPYEHVKVRHGDVLKLDLREVFASDFAEVSKVS----VVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+LL +V+++Q+E A R+ S T +Y ++I V +YS
Sbjct: 141 RLLEDKLPLENIVVMIQKEVAERMAA-SPGTKDYGSLSIAVQYYS 184
>gi|326804008|ref|YP_004321826.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a]
gi|326650269|gb|AEA00452.1| dimethyladenosine transferase [Aerococcus urinae ACS-120-V-Col10a]
Length = 294
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++ +I +++ AA + + V+EIGPG G+LT L + VLA E D +
Sbjct: 24 KKSLGQNFLMEPQILEKMVDAADIDQDTDVIEIGPGIGALTEFLCESAGRVLAFEVDDRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ D L VL +D ++ + + + F K + VVAN+P+ I+T +I
Sbjct: 84 LPVLEAELGHYDNLTVLHQDILEADLNASVSQYFPDSKRLA----VVANLPYYITTPIIF 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L S+ L++Q E A RL + T Y + I +N+Y
Sbjct: 140 HFLESDLEVSDFALMMQYEVAERLTAQA-GTKAYSALTIVLNYY 182
>gi|450179817|ref|ZP_21886824.1| dimethyladenosine transferase [Streptococcus mutans 24]
gi|449248756|gb|EMC46981.1| dimethyladenosine transferase [Streptococcus mutans 24]
Length = 291
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ N+ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTNTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K S + + + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILK----SDLQTCIKEFANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMIQKEVADRISAQPS--TKAYGSLSIAVQYY 179
>gi|297616271|ref|YP_003701430.1| dimethyladenosine transferase [Syntrophothermus lipocalidus DSM
12680]
gi|297144108|gb|ADI00865.1| dimethyladenosine transferase [Syntrophothermus lipocalidus DSM
12680]
Length = 292
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 3/164 (1%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K LGQH++L+ + +A A + + D V+EIG G G+LT L VLAIE D
Sbjct: 22 PKKRLGQHFLLDHNVLTSIAKACELNQNDYVVEIGAGIGALTGYLAQEAKGVLAIEVDPD 81
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++E A D +K L D +K +I F +S KV N+P+ I+T +I
Sbjct: 82 LSEPLKEVLAGRDNVKTLFGDILKLNIERETKQAFSLAPEAS--YKVCGNLPYYITTPII 139
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
LL VL++Q E A R++ P T +Y + + V +
Sbjct: 140 FHLLATAPSMCWAVLMVQREVAERMLAPP-GTKDYGMLTVMVRY 182
>gi|260889782|ref|ZP_05901045.1| dimethyladenosine transferase [Leptotrichia hofstadii F0254]
gi|260860388|gb|EEX74888.1| dimethyladenosine transferase [Leptotrichia hofstadii F0254]
Length = 282
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 88/159 (55%), Gaps = 8/159 (5%)
Query: 101 YHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
Y K ++ +K+ GQ+++ +S ++D++ A + E VLEIGPG G LT L+
Sbjct: 8 YQNKNKYFENENHKAKKNNGQNFLNDSNLSDEILDVANIDEKTEVLEIGPGLGFLTEKLI 67
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
+ A E D ++ + ++F + K++ +DF++ ++ FE +K+ K
Sbjct: 68 ENSKFLTAFEIDDDLIPFLNKKFENKQNFKLIHQDFMEADLK----KFFEDKKN----VK 119
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
VVANIP+ I++ +I +LL + E+ L++Q+E A R+
Sbjct: 120 VVANIPYYITSPIINKLLEYRENIDEIYLMVQKEVAERI 158
>gi|224128336|ref|XP_002320304.1| predicted protein [Populus trichocarpa]
gi|222861077|gb|EEE98619.1| predicted protein [Populus trichocarpa]
Length = 353
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 80/147 (54%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + + ++ D+VLEIGPGTG+LT LL AG V+AIE D MV
Sbjct: 30 KSKGQHILKNPLLVDSIVQKSGIKSTDVVLEIGPGTGNLTKKLLEAGKMVVAIELDPRMV 89
Query: 177 GLVRERF---ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ RF A ++LKV+Q D +K + F VANIP+ IS+ +
Sbjct: 90 LELQRRFQGTAFSNRLKVIQGDVLKTDL--------------PYFDICVANIPYQISSPL 135
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL F +++ Q E A+RLV
Sbjct: 136 TFKLLNHQPSFRCAIIMFQREFAMRLV 162
>gi|194467627|ref|ZP_03073614.1| dimethyladenosine transferase [Lactobacillus reuteri 100-23]
gi|194454663|gb|EDX43560.1| dimethyladenosine transferase [Lactobacillus reuteri 100-23]
Length = 297
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 85/144 (59%), Gaps = 3/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ + + + AA + + D V+EIGPG G+LT L A VLA+E DQ +
Sbjct: 25 KKSFGQNFLTDLNVLKNIVEAADITDNDNVIEIGPGIGALTEQLAQAAGEVLALEIDQDL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E + D +KV+ +D ++ ++ + F K S KVVAN+P+ I++ ++
Sbjct: 85 IPVLKEVLSPYDNVKVINQDVLQANLPELIKKEF---KDPSRPIKVVANLPYYITSPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL ++ + +++Q+E A RL
Sbjct: 142 NLLASPVEWATICVMMQKEVAQRL 165
>gi|297717804|gb|ADI50045.1| dimethyladenosine transferase [Candidatus Odyssella
thessalonicensis L13]
Length = 281
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 15/185 (8%)
Query: 100 DYHATIKA-LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
D+ AT+KA + G +KSLGQ+++ N EI ++A +A + VLEIGPG G LT
Sbjct: 4 DHLATVKATVEQYGLMAKKSLGQNFLFNMEIVRKIARSAGCLKEVTVLEIGPGPGGLTRA 63
Query: 159 LLNAGA-TVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216
LL AGA V+AIE D + ++E A+ +L+++Q D L++ + S
Sbjct: 64 LLEAGAQEVVAIEHDPRCIIALKELVDAAEGKLQIIQAD---------ALTISPQDLLPS 114
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIF 275
K+VAN+P+N+ T ++ + L D + L+ Q+E ALR+V +P +T++Y + +
Sbjct: 115 RPIKIVANLPYNVGTQLLIRWLHCLDNIVSMTLMFQKEVALRIVAQP--KTADYGRLTVL 172
Query: 276 VNFYS 280
+ +
Sbjct: 173 AQYLT 177
>gi|225571219|ref|ZP_03780217.1| hypothetical protein CLOHYLEM_07308 [Clostridium hylemonae DSM
15053]
gi|225160050|gb|EEG72669.1| hypothetical protein CLOHYLEM_07308 [Clostridium hylemonae DSM
15053]
Length = 291
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 93/165 (56%), Gaps = 6/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ AA + + D+VLEIGPG G++T L A V+A+E D+++
Sbjct: 24 QKKFGQNFLIDTHVLDKIIRAADITKEDMVLEIGPGIGTMTQYLAEAAGKVVAVEIDKNL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + V+ ED +K +R R ++ KVVAN+P+ I+T +I
Sbjct: 84 IPILTDTLHDYDNVTVINEDVLKLDVRE-----LAREENGGRPLKVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ + +Y +++ V +Y+
Sbjct: 139 GLFENDVPVESITVMVQKEVADRM-QTGPGNKDYGALSLAVQYYA 182
>gi|167041696|gb|ABZ06440.1| putative ribosomal RNA adenine dimethylase [uncultured marine
microorganism HF4000_010I05]
Length = 312
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 80/142 (56%), Gaps = 8/142 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRKSLGQH++ + + ++ AA + ++VLEIGPG G+LT L++ GA V+AIE D H
Sbjct: 38 PRKSLGQHFLADGRVLTRIVNAAEIASQELVLEIGPGQGALTRRLVDRGAQVVAIELDHH 97
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + +R + L V++ D K ++S + S KV+ N+P+ + +I
Sbjct: 98 LASTLPDRLGNPPNLTVVEADARKVDLKSLL--------GSGAVYKVLGNLPYYAANPII 149
Query: 235 KQLLPMGDIFSEVVLLLQEETA 256
++ L + +V+ LQ+E A
Sbjct: 150 RRFLEAPNQPQLMVVTLQQEVA 171
>gi|428218642|ref|YP_007103107.1| ribosomal RNA small subunit methyltransferase A [Pseudanabaena sp.
PCC 7367]
gi|427990424|gb|AFY70679.1| Ribosomal RNA small subunit methyltransferase A [Pseudanabaena sp.
PCC 7367]
Length = 278
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 87/150 (58%), Gaps = 19/150 (12%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + +I ++ AAA + D VLEIGPGTG+LT +LL +++A+E D+
Sbjct: 4 PRKRFAQHWLNSLDILYKIVAAADLHSDDCVLEIGPGTGNLTEMLLPWVRSLIAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R +F D ++++ D ++ + L E KVVANIP+NI++ ++
Sbjct: 64 LCRQLRRKFKHKDNFELIEADLLQ-------MPLPETPN------KVVANIPYNITSPIL 110
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
+L+ P+G F +VLL+Q+E RL
Sbjct: 111 HRLMGKIAQPVGQ-FDRIVLLVQKEIGDRL 139
>gi|409350932|ref|ZP_11233871.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
equicursoris CIP 110162]
gi|407877088|emb|CCK85929.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
equicursoris CIP 110162]
Length = 293
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ +A AA +QEGD V+EIGPG GSLT LL G V A E D +
Sbjct: 25 KKNLGQNFLVDLNAVQGIAEAAGIQEGDQVIEIGPGIGSLTEQLLLYGGKVFAYEVDDSL 84
Query: 176 VGLVRERFAS-ID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ ID + K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILETELPQRIDGEPLSSRFKLVLKDVLKANFAEDLAGFFDLTKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I LL G F+ + L++Q+E A RL +Y P+ I V
Sbjct: 141 ITTPIIFSLLESGLNFTSLTLMMQKEVADRLAA-GPGNKDYGPLTIAV 187
>gi|299143369|ref|ZP_07036449.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298517854|gb|EFI41593.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 288
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 9/177 (5%)
Query: 105 IKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
I+ LN G KSLGQ+++++ I ++ +A + D VLEIGPG G+LT L
Sbjct: 11 IELLNKYGFRFSKSLGQNFLIDGNIVRKIVDSAEISSNDNVLEIGPGVGTLTEELCLRAK 70
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V++IE D H+ L++E + +K++ D +K ++ F ++ KVVAN
Sbjct: 71 KVVSIEIDNHLKELLKESLP-YENVKIIFNDVLKTDLKK-----FTEQEFGGETFKVVAN 124
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+P+ ++T +I +L+ + +++Q+E A R PS T +Y +++F+ FYS
Sbjct: 125 LPYYVTTPIISKLIEEDLNIESITVMIQKEVANRFSASPS--TKDYGSLSVFIQFYS 179
>gi|166031341|ref|ZP_02234170.1| hypothetical protein DORFOR_01028 [Dorea formicigenerans ATCC
27755]
gi|346307325|ref|ZP_08849463.1| ribosomal RNA small subunit methyltransferase A [Dorea
formicigenerans 4_6_53AFAA]
gi|166028746|gb|EDR47503.1| dimethyladenosine transferase [Dorea formicigenerans ATCC 27755]
gi|345906158|gb|EGX75888.1| ribosomal RNA small subunit methyltransferase A [Dorea
formicigenerans 4_6_53AFAA]
Length = 292
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 94/165 (56%), Gaps = 6/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + +++ +AA + + D+VLEIGPG G++T L A V A+E D+++
Sbjct: 24 QKKFGQNFLIDTHVLEKIISAAGITKDDMVLEIGPGIGTMTQYLAEAAGKVAAVEIDKNL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K IR L E+ KVVAN+P+ I+T +I
Sbjct: 84 IPILEDTLSEYDNVMVINDDVLKVDIR----GLVEKENGGRP-VKVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ + +Y +++ V +Y+
Sbjct: 139 GLFEGNVPVESITVMVQKEVADRM-QTGPGNKDYGALSLAVQYYA 182
>gi|90961211|ref|YP_535127.1| dimethyladenosine transferase [Lactobacillus salivarius UCC118]
gi|385840016|ref|YP_005863340.1| Ribosomal RNA small subunit methyltransferase A
(S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
dimethyltransferase) (16S ribosomal RNA
dimethyladenosine transferase) (16S ribosomal RNA
dimethylase) [Lactobacillus salivarius CECT 5713]
gi|119365028|sp|Q1WV73.1|RSMA_LACS1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|90820405|gb|ABD99044.1| Dimethyladenosine transferase [Lactobacillus salivarius UCC118]
gi|300214137|gb|ADJ78553.1| Ribosomal RNA small subunit methyltransferase A
(S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
dimethyltransferase) (16S ribosomal RNA
dimethyladenosine transferase) (16S ribosomal RNA
dimethylase) [Lactobacillus salivarius CECT 5713]
Length = 296
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 85/144 (59%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AAA V E D V+EIGPG G+LT L V+A+E D +
Sbjct: 26 KKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++V+ +D +K +++ + FE K+VAN+P+ I+T ++
Sbjct: 86 LPVLADTLSPYENVEVVHQDILKADLKALIAEHFE----PGHKLKLVANLPYYITTPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL G F +V+++Q+E A RL
Sbjct: 142 HLLDSGIEFETIVVMMQKEVAERL 165
>gi|344923937|ref|ZP_08777398.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Candidatus Odyssella thessalonicensis L13]
Length = 282
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 104/185 (56%), Gaps = 15/185 (8%)
Query: 100 DYHATIKA-LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
D+ AT+KA + G +KSLGQ+++ N EI ++A +A + VLEIGPG G LT
Sbjct: 4 DHLATVKATVEQYGLMAKKSLGQNFLFNMEIVRKIARSAGCLKEVTVLEIGPGPGGLTRA 63
Query: 159 LLNAGA-TVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216
LL AGA V+AIE D + ++E A+ +L+++Q D L++ + S
Sbjct: 64 LLEAGAQEVVAIEHDPRCIIALKELVDAAEGKLQIIQAD---------ALTISPQDLLPS 114
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIF 275
K+VAN+P+N+ T ++ + L D + L+ Q+E ALR+V +P +T++Y + +
Sbjct: 115 RPIKIVANLPYNVGTQLLIRWLHCLDNIVSMTLMFQKEVALRIVAQP--KTADYGRLTVL 172
Query: 276 VNFYS 280
+ +
Sbjct: 173 AQYLT 177
>gi|354565155|ref|ZP_08984330.1| Ribosomal RNA small subunit methyltransferase A [Fischerella sp.
JSC-11]
gi|353549114|gb|EHC18556.1| Ribosomal RNA small subunit methyltransferase A [Fischerella sp.
JSC-11]
Length = 272
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 88/151 (58%), Gaps = 9/151 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + ++ AA +++GD +LEIGPGTG LT +L +++A+E D+
Sbjct: 4 PRKVFAQHWLKSKKALAEIIQAAKLEQGDRILEIGPGTGILTRRILPLVQSLVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + + +LQ DF++ + SL E + KVVANIP+NI+ +I
Sbjct: 64 LCEHLAKELGKRENFLLLQGDFLELDVP----SLLEGYPAFQNPNKVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV 260
+++L P +++ +VLL+Q+E A RLV
Sbjct: 120 EKILGTIANPNPELYDLIVLLVQKEVAERLV 150
>gi|315644358|ref|ZP_07897498.1| dimethyladenosine transferase [Paenibacillus vortex V453]
gi|315280235|gb|EFU43527.1| dimethyladenosine transferase [Paenibacillus vortex V453]
Length = 294
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + E LEIGPG G+LT L TV AIE DQ +
Sbjct: 25 KKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEKLAQTAGTVTAIEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++RE + +KV D +K + LF++ VVAN+P+ ++T ++
Sbjct: 85 IPILREVLEPYENVKVHHGDVLKVDLH----ELFQQDFGGVSKVSVVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+LL +V+++Q+E A R+ + + +Y ++I V +YS
Sbjct: 141 KLLEEKLPLENIVVMIQKEVAERMA-AAPGSKDYGSLSIAVQYYS 184
>gi|241896677|ref|ZP_04783973.1| dimethyladenosine transferase [Weissella paramesenteroides ATCC
33313]
gi|241870158|gb|EER73909.1| dimethyladenosine transferase [Weissella paramesenteroides ATCC
33313]
Length = 298
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+NS G +KSLGQ+++ + I + AA VQ D V+EIGPG G+LT L A V+
Sbjct: 17 MNSFGINTKKSLGQNFLTDINILKNIVAAGNVQPTDNVIEIGPGIGALTEQLARAAKQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ A D + V+ +D + + ++ E K+VAN+P+
Sbjct: 77 AFEIDDRLIPVLEHTMAPYDNVTVVNQDILTVDLEQ---AIKEHFTDPEAPLKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
I+T ++ Q+L F+ +V+++Q+E A RL
Sbjct: 134 YITTPILMQVLQSDVKFANIVVMMQKEVASRL 165
>gi|450081223|ref|ZP_21851609.1| dimethyladenosine transferase [Streptococcus mutans N66]
gi|449215461|gb|EMC15650.1| dimethyladenosine transferase [Streptococcus mutans N66]
Length = 291
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VSILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYY 179
>gi|418960653|ref|ZP_13512540.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus salivarius SMXD51]
gi|380344320|gb|EIA32666.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus salivarius SMXD51]
Length = 296
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 85/144 (59%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AAA V E D V+EIGPG G+LT L V+A+E D +
Sbjct: 26 KKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++V+ +D +K +++ + FE K+VAN+P+ I+T ++
Sbjct: 86 LPVLADTLSPYENVEVVHQDILKADLKALIAEHFE----PGHKLKLVANLPYYITTPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL G F +V+++Q+E A RL
Sbjct: 142 HLLDSGIEFETIVVMMQKEVAERL 165
>gi|220908859|ref|YP_002484170.1| dimethyladenosine transferase [Cyanothece sp. PCC 7425]
gi|219865470|gb|ACL45809.1| dimethyladenosine transferase [Cyanothece sp. PCC 7425]
Length = 284
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 11/151 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + ++ AAA + D VLEIGPG G LT LL+ ++LAIE D+
Sbjct: 6 PRKQFGQHWLRSDRALQRILAAAELSVEDTVLEIGPGRGVLTRSLLDRVKSLLAIEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNISTDV 233
+ ++ FA + L+++Q +F++ + + ++ GF KVVANIP+NI+ +
Sbjct: 66 LYSFLQSEFAGKNNLRLVQGNFLELELEKLLTE-----ETGIGFPNKVVANIPYNITGPI 120
Query: 234 IKQLL-----PMGDIFSEVVLLLQEETALRL 259
+++LL P F +VLL+Q+E A RL
Sbjct: 121 LEKLLGTIAQPNPQPFELIVLLVQKEVADRL 151
>gi|406594510|ref|YP_006741460.1| dimethyladenosine transferase [Chlamydia psittaci MN]
gi|405782942|gb|AFS21690.1| dimethyladenosine transferase [Chlamydia psittaci MN]
Length = 278
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 96/167 (57%), Gaps = 15/167 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 20 PKKGLSQNFLIDGNILRKILAVSCVQAGDRVLEIGPGFGALTEVLVNQGAHVVALEKDP- 78
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E ++ QL + E C L + K G +VVAN+P++++T ++
Sbjct: 79 ---MFEE---TLKQLPIHLEITDACKYPLSQL----QDKGWQGKGRVVANLPYHVTTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
+L L + + + V +++Q+E A R+ +P EY + IF+ F+
Sbjct: 129 TKLFLEVPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFF 173
>gi|147794654|emb|CAN73506.1| hypothetical protein VITISV_007907 [Vitis vinifera]
Length = 383
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 81/153 (52%), Gaps = 17/153 (11%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
K F KS GQH + N + D + + ++ D VLEIGPGTG+LT LL A V+A+
Sbjct: 44 KXMFLYKSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQAAQRVVAVX 103
Query: 171 KDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
D MV ++R+R A DQL V+ +D +K F VVANIP+
Sbjct: 104 LDARMVEILRKRVAEHGLEDQLTVICKDALKTDF--------------PQFDLVVANIPY 149
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
IS+ ++ +L+ + F LLLQ+E A RL+
Sbjct: 150 GISSPLVAKLVFGANPFRSATLLLQKEFARRLL 182
>gi|119511388|ref|ZP_01630500.1| 16S rRNA dimethylase [Nodularia spumigena CCY9414]
gi|119463933|gb|EAW44858.1| 16S rRNA dimethylase [Nodularia spumigena CCY9414]
Length = 275
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 88/159 (55%), Gaps = 11/159 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
PRKS QH++ + + D + AA Q D VLEIGPGTG LT LL +++A+E D
Sbjct: 4 PRKSFAQHWLKSEKALDAIIKAAECHQSDDRVLEIGPGTGILTRRLLPLVRSLVAVEIDF 63
Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ + ++ + +LQ DF+ + SH+ ++ + KVVANIP+NI+ +
Sbjct: 64 DLCKQLAKQLGKKENFLLLQGDFLTLDLPSHLAPFPNFQQPN----KVVANIPYNITGPI 119
Query: 234 IKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRT 266
I++LL P + F +VLL+Q+E A RL P RT
Sbjct: 120 IEKLLGTIANPNPEPFDSIVLLVQKEVADRLYAHPGSRT 158
>gi|421453233|ref|ZP_15902589.1| Dimethyladenosine transferase [Streptococcus salivarius K12]
gi|400181542|gb|EJO15809.1| Dimethyladenosine transferase [Streptococcus salivarius K12]
Length = 290
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + + + V+ ED +K +++ + K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILEDTLRDHENVNVINEDVLKADLQTRVKEF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ EP+ + Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISAEPN--SKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|197105173|ref|YP_002130550.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1]
gi|226732606|sp|B4RBS4.1|RSMA_PHEZH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|196478593|gb|ACG78121.1| dimethyladenosine transferase [Phenylobacterium zucineum HLK1]
Length = 285
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 9/154 (5%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
+AL + G + +K+ GQH++L+ I ++A A V +GD+V+E+GPG G LT LL GA
Sbjct: 11 EALEAHGLWAKKAFGQHFLLDLNITRKIARLAQVGDGDVVIEVGPGPGGLTRALLETGAR 70
Query: 166 VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
V+A+EKD+ L++E + L ++ D L+ E S+ A +V+N+
Sbjct: 71 VIAVEKDERFRPLLQEVADAAPHLTLVFGD---------ALTADEAALSAGRPAHLVSNL 121
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
P+N+ T ++ + L + + L+ Q+E A R+
Sbjct: 122 PYNVGTPLLIKWLTGPWTPASLTLMFQKEVADRI 155
>gi|366054192|ref|ZP_09451914.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus suebicus KCTC 3549]
Length = 298
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 86/144 (59%), Gaps = 3/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + + ++ +AA V D V+EIGPG G+LT L A V+A+E D +
Sbjct: 25 KKSLGQNFLTDLNVLSKIVSAADVGPEDNVIEIGPGIGALTEQLALAAGQVVALEVDTSL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D +KV+ +D + I + + F+ S KVVAN+P+ I+T ++
Sbjct: 85 LPVLDEVLGEYDNVKVINQDVLDVDIAALIDREFD---DPSKPVKVVANLPYYITTPILL 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
QLL +S++V++LQ+E A RL
Sbjct: 142 QLLNTEVKWSKIVVMLQKEVAQRL 165
>gi|385267068|ref|ZP_10045155.1| dimethyladenosine transferase [Bacillus sp. 5B6]
gi|385151564|gb|EIF15501.1| dimethyladenosine transferase [Bacillus sp. 5B6]
Length = 293
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 95/166 (57%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A + + V+EIGPG G+LT L V+A E DQ +
Sbjct: 24 KKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K ++ S+ E + V AN+P+ ++T +I
Sbjct: 84 LPILNDTLSPYDNVTIIHQDVLKADVK----SVIEEQFQDCDEIMVTANLPYYVTTPIIM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 140 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 183
>gi|386580878|ref|YP_006077283.1| dimethyladenosine transferase [Streptococcus suis JS14]
gi|319759070|gb|ADV71012.1| dimethyladenosine transferase [Streptococcus suis JS14]
Length = 290
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D + T L G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DKNVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
VLA E D ++ ++ + D + V+ +D +K +++ + + K+
Sbjct: 65 AENAGEVLAFEIDDRLIPILADTLGRFDNVTVVNQDILKTDLQTQIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTSILMHLIESKIPFSEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|308066864|ref|YP_003868469.1| dimethyladenosine transferase [Paenibacillus polymyxa E681]
gi|305856143|gb|ADM67931.1| Dimethyladenosine transferase [Paenibacillus polymyxa E681]
Length = 294
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 5/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ AA + E LEIGPG G+LT L + V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILNKIVNAAGLDETKGALEIGPGIGALTEKLAQSAKAVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A + +KV D +K +R + F S VVAN+P+ ++T ++
Sbjct: 85 LPILEEVLAPYEHVKVRHGDVLKLDLREVFAADFADVSKVS----VVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+LL +V+++Q+E A R+ S T +Y ++I V +YS
Sbjct: 141 RLLEDKLPLENIVVMIQKEVAERMAA-SPGTKDYGSLSIAVQYYS 184
>gi|291549844|emb|CBL26106.1| dimethyladenosine transferase [Ruminococcus torques L2-14]
Length = 304
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 97/178 (54%), Gaps = 8/178 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ + D++ AAA + + D VLEIGPG G++T L A
Sbjct: 26 TIEVLQKYNFVFQKKFGQNFLIDTHVLDKIIAAAEITKDDFVLEIGPGIGTMTQYLACAA 85
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D+ ++ ++ + + D +V+ D +K I + ++ KVVA
Sbjct: 86 RKVVAVEIDKALIPILEDTLSDYDNARVINNDVLKVDI-----AKLAEEENGGKPIKVVA 140
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 141 NLPYYITTPIIMGLFENHVPIKSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 196
>gi|227509274|ref|ZP_03939323.1| dimethyladenosine transferase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227512287|ref|ZP_03942336.1| dimethyladenosine transferase [Lactobacillus buchneri ATCC 11577]
gi|227084462|gb|EEI19774.1| dimethyladenosine transferase [Lactobacillus buchneri ATCC 11577]
gi|227191272|gb|EEI71339.1| dimethyladenosine transferase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 301
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I + + AA + + D V+EIGPG G LT L A VLA E D+ +
Sbjct: 30 KKSLGQNFLIDLNILNNIVEAAELTKNDNVIEIGPGIGGLTEQLAKAANQVLAFEIDEKL 89
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + + ++++ +D +K ++ + F K KVVAN+P+ I+T ++
Sbjct: 90 LPVLDETLSPYNNIEIINQDILKANLPEVVAKRFRTDKP----LKVVANLPYYITTPIVM 145
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL F +V+++Q+E A RL
Sbjct: 146 DLLANPVKFESIVVMMQKEVAERL 169
>gi|154684561|ref|YP_001419722.1| dimethyladenosine transferase [Bacillus amyloliquefaciens FZB42]
gi|375360733|ref|YP_005128772.1| dimethyladenosine transferase [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384263673|ref|YP_005419380.1| dimethyladenosine transferase KsgA [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387896568|ref|YP_006326864.1| dimethyladenosine transferase [Bacillus amyloliquefaciens Y2]
gi|394994176|ref|ZP_10386904.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. 916]
gi|421729462|ref|ZP_16168594.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451348568|ref|YP_007447199.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens IT-45]
gi|154350412|gb|ABS72491.1| KsgA [Bacillus amyloliquefaciens FZB42]
gi|371566727|emb|CCF03577.1| dimethyladenosine transferase [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380497026|emb|CCG48064.1| dimethyladenosine transferase KsgA [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387170678|gb|AFJ60139.1| dimethyladenosine transferase [Bacillus amyloliquefaciens Y2]
gi|393804952|gb|EJD66343.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus sp. 916]
gi|407076706|gb|EKE49687.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449852326|gb|AGF29318.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens IT-45]
Length = 293
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 95/166 (57%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A + + V+EIGPG G+LT L V+A E DQ +
Sbjct: 24 KKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K ++ S+ E + V AN+P+ ++T +I
Sbjct: 84 LPILNDTLSPYDNVTIIHQDVLKADVK----SVIEEQFQDCDEIMVTANLPYYVTTPIIM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 140 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 183
>gi|227522373|ref|ZP_03952422.1| dimethyladenosine transferase [Lactobacillus hilgardii ATCC 8290]
gi|227090431|gb|EEI25743.1| dimethyladenosine transferase [Lactobacillus hilgardii ATCC 8290]
Length = 301
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I + + AA + + D V+EIGPG G LT L A VLA E D+ +
Sbjct: 30 KKSLGQNFLIDLNILNNIVEAAELTKNDNVIEIGPGIGGLTEQLAKAANQVLAFEIDEKL 89
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + + ++++ +D +K ++ + F K KVVAN+P+ I+T ++
Sbjct: 90 LPVLDETLSPYNNIEIINQDILKANLPEVVAKRFRTDKP----LKVVANLPYYITTPIVM 145
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL F +V+++Q+E A RL
Sbjct: 146 DLLANPVKFESIVVMMQKEVAERL 169
>gi|342215032|ref|ZP_08707701.1| dimethyladenosine transferase [Veillonella sp. oral taxon 780 str.
F0422]
gi|341590138|gb|EGS33387.1| dimethyladenosine transferase [Veillonella sp. oral taxon 780 str.
F0422]
Length = 287
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 94/165 (56%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++ + D++ AA ++ GD VLE+GPG G+LT L +GA V ++E D+ ++
Sbjct: 25 KKLGQNFLIKRTVVDKIVQAAELEVGDAVLEVGPGIGTLTQGLAQSGANVTSVELDRRLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + D ++++ D +K +I M F KVVAN+P+ I+T +I
Sbjct: 85 EVLDTTLEAYDNVRIIHGDVLKVNIPELM--------DHKPF-KVVANLPYYITTPIIMS 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V+++Q+E A R++ +P T Y +++ V +Y+
Sbjct: 136 LLESKLPIERLVVMVQKEVAERMIAKPG--TKMYGALSVAVQYYT 178
>gi|325663734|ref|ZP_08152138.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325470227|gb|EGC73460.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 298
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 95/166 (57%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ +A + + D VLEIGPG G++T L A V+A+E D+ +
Sbjct: 24 QKKFGQNFLIDTHVLDKIIRSAEITKDDFVLEIGPGIGTMTQYLACAAREVVAVEIDKAL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + +S D + V+ ED +K I + L + R KVVAN+P+ I+T +I
Sbjct: 84 IPILEDTLSSYDNVTVINEDVLKLDI----VKLAQERNGGKPI-KVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 139 GLFESHVPVQSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 182
>gi|118580905|ref|YP_902155.1| dimethyladenosine transferase [Pelobacter propionicus DSM 2379]
gi|118503615|gb|ABL00098.1| dimethyladenosine transferase [Pelobacter propionicus DSM 2379]
Length = 271
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAI 169
S GR P KSLGQ+++++ I +++ AA++ D VLE+GPG G+LT L A +L +
Sbjct: 2 SSGRRPLKSLGQNFLVDRNIVERIIRGAALEPDDQVLEVGPGRGALTAHLSERVARLLLV 61
Query: 170 EKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
E D + + ER+ +++V+ D + + + + + KVVAN+P+NI
Sbjct: 62 EYDHALADELSERYRENQRVRVIDGDILAVDLEALL-------EDGDKRWKVVANLPYNI 114
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRL 259
ST V+ + L + S ++L+LQ+E RL
Sbjct: 115 STQVLFRFLELRSRLSRMLLMLQKEVGDRL 144
>gi|406838309|ref|ZP_11097903.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus vini DSM 20605]
Length = 296
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ N + ++ A A + + D V+EIGPG G+LT L VLA+E DQ +
Sbjct: 26 KKSLGQNFLTNLALLQKMVAVAEIGQDDDVIEIGPGIGALTEQLAQKARRVLALEVDQRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A + +LQ+D + +++ L ++ KVVAN+P+ I++ +IK
Sbjct: 86 LPVLAETLADYQNITILQQDI----LTANLAELIDQYLPGHQQIKVVANLPYYITSPIIK 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL S +V+++Q+E A RL
Sbjct: 142 FLLQQPVALSVIVVMMQKEVAERL 165
>gi|389680946|ref|ZP_10172292.1| dimethyladenosine transferase [Pseudomonas chlororaphis O6]
gi|388555235|gb|EIM18482.1| dimethyladenosine transferase [Pseudomonas chlororaphis O6]
Length = 272
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + GD +LEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSINAKSGDRMLEIGPGQGALTEGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FA D + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 VPILNQQFAGRDNFSLHQGDALKFD--------FNSLNAAPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL + ++ +LQ+E RL
Sbjct: 122 HLLQNASLIRDMHFMLQKEVVERL 145
>gi|424824982|ref|ZP_18249969.1| dimethyladenosine transferase [Chlamydophila abortus LLG]
gi|333410081|gb|EGK69068.1| dimethyladenosine transferase [Chlamydophila abortus LLG]
Length = 278
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 97/170 (57%), Gaps = 16/170 (9%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
GR P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EK
Sbjct: 18 GR-PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEK 76
Query: 172 DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
D + E ++ QL + E C L + + G +VVAN+P++I+T
Sbjct: 77 DP----MFEE---TLKQLPIHLEITDACKYPLSQL----QDQGWQGKGRVVANLPYHITT 125
Query: 232 DVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
++ +L L + + V +++Q+E A R+ +P EY + IF+ F+
Sbjct: 126 PLLTKLFLEAPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFF 173
>gi|260893941|ref|YP_003240038.1| dimethyladenosine transferase [Ammonifex degensii KC4]
gi|260866082|gb|ACX53188.1| dimethyladenosine transferase [Ammonifex degensii KC4]
Length = 297
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 103 ATIKA-LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
A +KA L G PRK GQH+++ E+ ++ AA + D V+E+GPG G LT LL
Sbjct: 12 AAVKAVLAEWGIKPRKRWGQHFLVRREVLAKIVEAAELSPADTVVEVGPGLGVLTARLLE 71
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF--A 219
V+AIE D + +R RF +L +++ D ++C + + + GF
Sbjct: 72 KAGKVVAIELDPRLEAFLRARFGEHPRLTLVRGDALECDFDLLV-------QEARGFFPY 124
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
KVVAN+P+ +++ ++ +LL S +VL+LQ+E ALRL+ S T EY +++ V +
Sbjct: 125 KVVANLPYYLTSPLLLRLLTSPWRISLLVLMLQKEVALRLLA-SPGTKEYGSLSLLVQY 182
>gi|443322232|ref|ZP_21051259.1| dimethyladenosine transferase [Gloeocapsa sp. PCC 73106]
gi|442788022|gb|ELR97728.1| dimethyladenosine transferase [Gloeocapsa sp. PCC 73106]
Length = 265
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 91/157 (57%), Gaps = 17/157 (10%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + I +Q+ AAA + + D VLEIGPGTG LT L+ + ++++A+E D+ +
Sbjct: 6 RKRFGQHWLKSEAILNQIIAAARLCQDDAVLEIGPGTGILTRRLVESVSSLVAVEIDRDL 65
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+R+ + +++ D ++ + ++ KVVANIP+NI+ +++
Sbjct: 66 CIKLRKLLGDRENFSLIEADILQLDLNNY-----------PHLNKVVANIPYNITGPILE 114
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRT 266
+LL P G + +VLL+Q+E A RLV +P +T
Sbjct: 115 KLLGTITNPTGQNYQLIVLLIQKEVADRLVAQPGSKT 151
>gi|449966212|ref|ZP_21812240.1| dimethyladenosine transferase [Streptococcus mutans 15VF2]
gi|449170285|gb|EMB73008.1| dimethyladenosine transferase [Streptococcus mutans 15VF2]
Length = 291
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
Query: 106 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
+A+ + RF +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A
Sbjct: 10 RAILERHRFTFKKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAA 69
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V+A E D +V ++ + D +KV+ ED +K +++ + + KVVAN
Sbjct: 70 EVMAFEIDDRLVSILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 126 LPYYITTPILMHLIESKIPFAEFVVMMQKEVAERISAKPN--TKAYGSLSIAVQYY 179
>gi|356538250|ref|XP_003537617.1| PREDICTED: probable dimethyladenosine transferase-like [Glycine
max]
Length = 341
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 81/147 (55%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH ++N I D + +A+ D VLEIGPGTG+LT LL A V+AIE D MV
Sbjct: 36 KSRGQHILINPRILDTIVRRSAINPTDTVLEIGPGTGNLTLKLLEAAHKVVAIEIDHRMV 95
Query: 177 GLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ +R D+L+V++ D M + F R F VVANIP+ IS+ +
Sbjct: 96 QVLEKRVLQRGLKDKLRVIERD--------AMRAPFPR------FDLVVANIPYRISSPL 141
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +L+ F LLLQ+E A RL+
Sbjct: 142 VIKLVYGATPFRSATLLLQKEFARRLL 168
>gi|392947700|ref|ZP_10313332.1| Dimethyladenosine transferase [Lactobacillus pentosus KCA1]
gi|392437111|gb|EIW15003.1| Dimethyladenosine transferase [Lactobacillus pentosus KCA1]
Length = 295
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 91/165 (55%), Gaps = 9/165 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VLA E D +
Sbjct: 25 KKSLGQNFLTDQNVLHNIVATADIGANDNVIEIGPGIGALTEYLARAAHHVLAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + V+ +D +K + + + + + K+VAN+P+ I+T ++
Sbjct: 85 LPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPYYITTPILM 140
Query: 236 QLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
LL GD+ F +V+++Q+E A RL EP T Y + I V +
Sbjct: 141 NLL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQY 182
>gi|386727501|ref|YP_006193827.1| protein RsmA [Paenibacillus mucilaginosus K02]
gi|384094626|gb|AFH66062.1| protein RsmA [Paenibacillus mucilaginosus K02]
Length = 305
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ + +++ AA + + LEIGPG G+LT L A A V A+E DQ +
Sbjct: 33 KKSLGQNFLIDTNVLNKIVGAAELDKTKGALEIGPGIGALTQQLAKAAARVTAVEIDQRL 92
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L++E A V+ D ++ + LF+ S VVAN+P+ ++T +I
Sbjct: 93 LPLLKETLAPYPHASVIHGDVLQVSLN----DLFKEHFSECSGVSVVANLPYYVTTPIIM 148
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFY 279
+LL +V+++Q+E A R+ P + EY ++I V +Y
Sbjct: 149 KLLEEKLPLENIVVMIQKEVAERMAAGPGGK--EYGSLSIAVQYY 191
>gi|397649082|ref|YP_006489609.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Streptococcus
mutans GS-5]
gi|392602651|gb|AFM80815.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus mutans GS-5]
Length = 291
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYY 179
>gi|354585782|ref|ZP_09004613.1| dimethyladenosine transferase [Paenibacillus lactis 154]
gi|353184107|gb|EHB49635.1| dimethyladenosine transferase [Paenibacillus lactis 154]
Length = 294
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + + LEIGPG G+LT L V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILGKIVEAAGLDKEKGALEIGPGIGALTEKLAQMAGAVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E D +KV D +K + LF + + G VVAN+P+ ++T ++
Sbjct: 85 IPILKEVLEPYDNVKVHHGDVLKVDLH----ELFRQDFAEVGKVSVVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+LL +V+++Q+E A R+ S + +Y ++I V +YS
Sbjct: 141 KLLEEKLPLENIVVMIQKEVAERMA-ASPGSKDYGSLSIAVQYYS 184
>gi|347530404|ref|YP_004837167.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Roseburia hominis A2-183]
gi|345500552|gb|AEN95235.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Roseburia hominis A2-183]
Length = 292
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 95/166 (57%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + +++ AA + + D VLEIGPG G++T L V A+E DQ++
Sbjct: 22 QKKFGQNFLIDTHVLERIIEAAGITKDDFVLEIGPGIGTMTQYLCENAREVTAVEIDQNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + ++ D + V+ ED +K I + L E + + KVVAN+P+ I+T +I
Sbjct: 82 IPILADTLSAYDNVTVINEDILKLDI----VKLAEEKNAGKPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 137 GLFESHVPIDSITIMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 180
>gi|187918451|ref|YP_001884014.1| dimethyladenosine transferase [Borrelia hermsii DAH]
gi|119861299|gb|AAX17094.1| dimethyladenosine transferase [Borrelia hermsii DAH]
Length = 278
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 84/155 (54%), Gaps = 12/155 (7%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
+ L SK PRK GQ+Y++N I ++L A ++E + + EIGPG G++T +LL
Sbjct: 13 RMLESKNIAPRKIWGQNYLINEHIREKLVDALEIKENERIWEIGPGLGAMTIILLKKANF 72
Query: 166 VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
+ E D ++ E+F + K+++ DF+K + ++ K+ +N+
Sbjct: 73 LTVFEIDPKYSEILNEQFGQLKNFKLIKGDFLKTY-----------KQEGQNINKIFSNL 121
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
P+NI++ VI L+ +I + +V +Q+E A R++
Sbjct: 122 PYNIASKVISMLIE-DEILTHMVFTVQKELADRML 155
>gi|399007391|ref|ZP_10709901.1| dimethyladenosine transferase [Pseudomonas sp. GM17]
gi|425901934|ref|ZP_18878525.1| dimethyladenosine transferase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397892756|gb|EJL09233.1| dimethyladenosine transferase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|398120363|gb|EJM10027.1| dimethyladenosine transferase [Pseudomonas sp. GM17]
Length = 272
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + GD +LEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSINAKSGDRMLEIGPGQGALTEGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FA D + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 VPILNQQFAGRDNFSLHQGDALKFD--------FNSLNAAPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL + ++ +LQ+E RL
Sbjct: 122 HLLQNAGLIRDMHFMLQKEVVERL 145
>gi|87302768|ref|ZP_01085579.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
sp. WH 5701]
gi|87282651|gb|EAQ74609.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
sp. WH 5701]
Length = 286
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 89/154 (57%), Gaps = 20/154 (12%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIE 170
G RK GQH++ ++ + +++ AAA +Q G+ VLE+GPG G+LT LL A + AIE
Sbjct: 5 GHHTRKRFGQHWLTDAAVLERIVAAAELQPGERVLEVGPGRGALTERLLATALGELHAIE 64
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D+ +V +R+ FA ++ ++L+ D ++ ++ KVVANIP+NI+
Sbjct: 65 LDRDLVAGLRQHFAGDERFQLLEGDVLRLNL--------------PPADKVVANIPYNIT 110
Query: 231 TDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
++++L+ P+ + +VLL+Q+E R+
Sbjct: 111 GPLLERLVGRLDRPLASPYRRLVLLVQQEVGERI 144
>gi|126696263|ref|YP_001091149.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
9301]
gi|166221687|sp|A3PCS3.1|RSMA_PROM0 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|126543306|gb|ABO17548.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
marinus str. MIT 9301]
Length = 274
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 30/166 (18%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+NSK +K GQH+++N +I +++ A + E D +LEIGPG G+LT+ LLN+ L
Sbjct: 1 MNSKNYHQKKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTSKLLNSEIKKL 60
Query: 168 -AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
AIE D+ ++ L+ ++F + D+ + Q D + ++ S + KV+ANIP
Sbjct: 61 HAIELDKDLINLLNDKFNNNDKFSLQQGDILSVNLDS----------INKKITKVIANIP 110
Query: 227 FNISTDVIKQLLPMGDIF------------SEVVLLLQEETALRLV 260
+NI+ P+ DIF +++ L+Q++ R++
Sbjct: 111 YNITG-------PILDIFIGRLGIIRKYNYEKIIFLMQKDVVDRIL 149
>gi|322419457|ref|YP_004198680.1| dimethyladenosine transferase [Geobacter sp. M18]
gi|320125844|gb|ADW13404.1| dimethyladenosine transferase [Geobacter sp. M18]
Length = 277
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 84/147 (57%), Gaps = 5/147 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + ++ + A D +LE+GPG G+L+ +L +GA +A+E D+ +
Sbjct: 9 KKEFGQNFLVDDNVLTRIVSCVAPGTEDCILEVGPGRGALSRLLAASGARFVAVEWDRDL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ + FA D++++ D ++ + + + RK KV AN+P+NIS+ V+
Sbjct: 69 IPFLNSEFAGNDRVEIGHGDILRVDLHQILTTRAPGRK-----WKVAANLPYNISSQVLF 123
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEP 262
+ + D+F +VL+LQ+E RL P
Sbjct: 124 KFMEDCDLFEGLVLMLQKEVGDRLTAP 150
>gi|77412114|ref|ZP_00788438.1| dimethyladenosine transferase [Streptococcus agalactiae CJB111]
gi|77161821|gb|EAO72808.1| dimethyladenosine transferase [Streptococcus agalactiae CJB111]
Length = 290
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ A D ++V+ +D +K +++ + + K+ KVVAN+P+ I+T ++
Sbjct: 81 IPILAGTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R + T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADR-ISAMPNTKAYGSLSIAVQYY 179
>gi|424779909|ref|ZP_18206795.1| Dimethyladenosine transferase [Catellicoccus marimammalium
M35/04/3]
gi|422843448|gb|EKU27885.1| Dimethyladenosine transferase [Catellicoccus marimammalium
M35/04/3]
Length = 294
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ I +AA A + + ++E+GPG G+LT L +G VLA E D +
Sbjct: 24 KKSLGQNFLTEPNILRHIAATAELNKESQIIEVGPGIGALTEHLARSGGEVLAFEIDGRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + V+ ED +K ++R +F+ K +VVAN+P+ I+T ++
Sbjct: 84 LPILEETLAPYDNVTVVNEDVLKVNLREIASQVFDLEKP----IQVVANLPYYITTPIMM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L ++V+++Q+E A R ++ ++ Y ++I V +Y
Sbjct: 140 HFLESDLPVEKMVVMMQKEVAER-IQAKPKSKAYGSLSIAVQYY 182
>gi|450051682|ref|ZP_21840969.1| dimethyladenosine transferase [Streptococcus mutans NFSM1]
gi|449201694|gb|EMC02677.1| dimethyladenosine transferase [Streptococcus mutans NFSM1]
Length = 291
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYY 179
>gi|449887770|ref|ZP_21787022.1| dimethyladenosine transferase [Streptococcus mutans SA41]
gi|449915751|ref|ZP_21796467.1| dimethyladenosine transferase [Streptococcus mutans 15JP3]
gi|449941032|ref|ZP_21805345.1| dimethyladenosine transferase [Streptococcus mutans 11A1]
gi|449997089|ref|ZP_21823822.1| dimethyladenosine transferase [Streptococcus mutans A9]
gi|450010441|ref|ZP_21828679.1| dimethyladenosine transferase [Streptococcus mutans A19]
gi|450024506|ref|ZP_21831266.1| dimethyladenosine transferase [Streptococcus mutans U138]
gi|450039712|ref|ZP_21836340.1| dimethyladenosine transferase [Streptococcus mutans T4]
gi|450125201|ref|ZP_21867540.1| dimethyladenosine transferase [Streptococcus mutans U2A]
gi|449152541|gb|EMB56246.1| dimethyladenosine transferase [Streptococcus mutans 11A1]
gi|449156077|gb|EMB59561.1| dimethyladenosine transferase [Streptococcus mutans 15JP3]
gi|449182417|gb|EMB84442.1| dimethyladenosine transferase [Streptococcus mutans A9]
gi|449190163|gb|EMB91756.1| dimethyladenosine transferase [Streptococcus mutans A19]
gi|449191945|gb|EMB93393.1| dimethyladenosine transferase [Streptococcus mutans U138]
gi|449200054|gb|EMC01101.1| dimethyladenosine transferase [Streptococcus mutans T4]
gi|449232774|gb|EMC31871.1| dimethyladenosine transferase [Streptococcus mutans U2A]
gi|449252158|gb|EMC50145.1| dimethyladenosine transferase [Streptococcus mutans SA41]
Length = 291
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYY 179
>gi|350566342|ref|ZP_08935024.1| dimethyladenosine transferase [Peptoniphilus indolicus ATCC 29427]
gi|348662873|gb|EGY79504.1| dimethyladenosine transferase [Peptoniphilus indolicus ATCC 29427]
Length = 280
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 100/180 (55%), Gaps = 12/180 (6%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
H ++ L+ G KSLGQ+++++ I ++ A V EG VLEIGPG G+LT L
Sbjct: 8 HRVVEILDRYGFKFSKSLGQNFLIDGNIVRKIVDVAEV-EGKNVLEIGPGLGTLTEELAM 66
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
VLAIE D+ ++ V E +D +KV+ +DF+K L + E F V
Sbjct: 67 RAKKVLAIEIDKKLIP-VHEETLKLDNVKVIYDDFLKLD-----LKILEEEFEGESFV-V 119
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
V+N+P+ ++T ++ +++ S + +++Q+E A R +PS T +Y +++FV FYS
Sbjct: 120 VSNLPYYVTTPILTRIIEQTRAES-ITVMVQKEVARRFSAKPS--TKDYGSLSVFVQFYS 176
>gi|296111672|ref|YP_003622054.1| dimethyladenosine transferase [Leuconostoc kimchii IMSNU 11154]
gi|339491061|ref|YP_004705566.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc sp. C2]
gi|295833204|gb|ADG41085.1| dimethyladenosine transferase [Leuconostoc kimchii IMSNU 11154]
gi|338852733|gb|AEJ30943.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc sp. C2]
Length = 295
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN+ G +K GQ+++ + + + A + + D V+EIGPG G+LT L A V+
Sbjct: 17 LNTYGLHAKKKFGQNFLTDLTVLHGIVDIAGITDQDYVIEIGPGIGALTEQLARAAKKVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ E D +KV+ D + ++ + + F KVVAN+P+
Sbjct: 77 AFEIDTQMVDVLSETLQPYDNVKVINGDILDINLPEVIRAEF----GEEAHVKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ QLL + +V+++Q E A RL + T Y + + + +++
Sbjct: 133 YITTPILMQLLRTNIAWDNIVVMMQREVAERL-NAEVGTKAYGVLTLIIQYFA 184
>gi|429503575|ref|YP_007184759.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|452854105|ref|YP_007495788.1| Ribosomal RNA small subunit methyltransferase A [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|429485165|gb|AFZ89089.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|452078365|emb|CCP20115.1| Ribosomal RNA small subunit methyltransferase A [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 293
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 94/166 (56%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A + + V+EIGPG G+LT L V+A E DQ +
Sbjct: 24 KKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K ++ S+ E V AN+P+ ++T +I
Sbjct: 84 LPILNDTLSPYDNVTIIHQDVLKADVK----SVIEEHFQDCDEIMVTANLPYYVTTPIIM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 140 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 183
>gi|449981456|ref|ZP_21817794.1| dimethyladenosine transferase [Streptococcus mutans 5SM3]
gi|449175747|gb|EMB78135.1| dimethyladenosine transferase [Streptococcus mutans 5SM3]
Length = 291
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYY 179
>gi|404482670|ref|ZP_11017895.1| dimethyladenosine transferase [Clostridiales bacterium OBRC5-5]
gi|404343760|gb|EJZ70119.1| dimethyladenosine transferase [Clostridiales bacterium OBRC5-5]
Length = 292
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 98/167 (58%), Gaps = 6/167 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ A+ + + D+ +EIGPG G+LT L NA V+AIE D+++
Sbjct: 22 QKKFGQNFLIDTHVLDKICQASGLGKNDLAIEIGPGIGALTQYLANAAKAVVAIEIDKNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA--KVVANIPFNISTDV 233
+ ++ E A+ + + ++ DF+K + + E R+ F ++VAN+P+ I+T +
Sbjct: 82 LPILNETLANYENISIINADFLKVDLEKLIE---ECRQKYGDFENIRIVANLPYYITTPI 138
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I +L + +++Q+E A R+ + + +Y +++ V +YS
Sbjct: 139 IMNVLESHIHIDSITVMIQKEVADRM-QALPGSKDYGALSLAVQYYS 184
>gi|449491400|ref|XP_004158885.1| PREDICTED: probable dimethyladenosine transferase-like [Cucumis
sativus]
Length = 352
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 20/164 (12%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N I D + +A+ D VLEIGPGTG+LT LL A V+A+E D+ MV
Sbjct: 58 KSRGQHILTNQRILDSIVRKSAILPTDTVLEIGPGTGNLTLKLLEASQKVIAVEIDKRMV 117
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ +R A D++ V+ +D +KC F VVANIP+ IS+ +
Sbjct: 118 EVLHKRVAEHQLEDRICVICQDALKCEF--------------PHFDLVVANIPYGISSPL 163
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFV 276
+ +L+ F LLLQ+E A RL+ +P SEY + + V
Sbjct: 164 VAKLVYGTIPFRSATLLLQKEFARRLLADPG--DSEYNRLAVNV 205
>gi|341821161|emb|CCC57502.1| ribosomal RNA small subunit methyltransferase A [Weissella
thailandensis fsh4-2]
Length = 298
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+NS G RKSLGQ+++ + +I + A VQ D V+EIGPG G+LT L + V+
Sbjct: 17 MNSFGINTRKSLGQNFLTDIKILKNIVTAGDVQPTDNVIEIGPGIGALTEQLARSAKQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ A D + V+ +D + + + ++ E K+VAN+P+
Sbjct: 77 AFEIDDRLMPVLEHTMAPYDNVTVINQDILSVDLET---AIQEHFSDPDAPLKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
I+T ++ Q+L F+ +V+++Q+E A RL
Sbjct: 134 YITTPILMQVLQSNVQFANIVVMMQKEVASRL 165
>gi|449930376|ref|ZP_21802053.1| dimethyladenosine transferase [Streptococcus mutans 3SN1]
gi|449163627|gb|EMB66726.1| dimethyladenosine transferase [Streptococcus mutans 3SN1]
Length = 291
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYY 179
>gi|153811992|ref|ZP_01964660.1| hypothetical protein RUMOBE_02385 [Ruminococcus obeum ATCC 29174]
gi|149831891|gb|EDM86977.1| dimethyladenosine transferase [Ruminococcus obeum ATCC 29174]
Length = 290
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L G +K GQ++++++ + D++ A+ + + D VLEIGPG G++T L +A
Sbjct: 12 TIEVLQKYGFVFQKRFGQNFLIDTRVLDRIIEASEITKDDFVLEIGPGIGTMTQYLADAA 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A+E D ++ ++++ D + V+ D +K IR K+ KVVA
Sbjct: 72 REVTAVEIDDALIPILQDTLKEWDNVSVIHGDILKTDIRK-----IADEKNQGRPIKVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ + + +Y +++ V +Y+
Sbjct: 127 NLPYYITTPIIMGLFESHVPVDSITVMVQKEVADRM-QTGPGSKDYGALSLAVQYYA 182
>gi|301299614|ref|ZP_07205875.1| dimethyladenosine transferase [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852801|gb|EFK80424.1| dimethyladenosine transferase [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 297
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AAA V E D V+EIGPG G+LT L V+A+E D +
Sbjct: 27 KKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++V+ +D +K + + + FE K+VAN+P+ I+T ++
Sbjct: 87 LPVLADTLSPYENVEVIHQDILKADLEALIAEHFE----PGHKLKLVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL G F +V+++Q+E A RL
Sbjct: 143 HLLDSGIEFETIVVMMQKEVAERL 166
>gi|227891849|ref|ZP_04009654.1| dimethyladenosine transferase [Lactobacillus salivarius ATCC 11741]
gi|227866312|gb|EEJ73733.1| dimethyladenosine transferase [Lactobacillus salivarius ATCC 11741]
Length = 296
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AAA V E D V+EIGPG G+LT L V+A+E D +
Sbjct: 26 KKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++V+ +D +K + + + FE K+VAN+P+ I+T ++
Sbjct: 86 LPVLADTLSPYENVEVIHQDILKADLEALIAEHFE----PGHKLKLVANLPYYITTPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL G F +V+++Q+E A RL
Sbjct: 142 HLLDSGIEFETIVVMMQKEVAERL 165
>gi|295094395|emb|CBK83486.1| dimethyladenosine transferase [Coprococcus sp. ART55/1]
Length = 287
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 95/166 (57%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + +++ +AA + + D VLEIGPG G++T L + V+A+E D+++
Sbjct: 22 QKKFGQNFLIDAHVINKIISAADITKDDCVLEIGPGIGTMTQYLAESAGQVVAVEIDKNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + ++ +D +K I + E R KVVAN+P+ I+T +I
Sbjct: 82 LPILDETLAEYDNVTIINDDILKVDIN----KIVEERNGGRPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L V +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 137 GLFEKHVPLLSVTVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 180
>gi|124023319|ref|YP_001017626.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
9303]
gi|166221689|sp|A2CA51.1|RSMA_PROM3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|123963605|gb|ABM78361.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
marinus str. MIT 9303]
Length = 280
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 92/154 (59%), Gaps = 15/154 (9%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIE 170
G RK QH+++++ + Q+ AA VQ D +LE+GPG G+LT LL + A+ V A+E
Sbjct: 5 GHHARKRFAQHWLIDAAVLTQILDAADVQPDDRLLEVGPGRGALTERLLASSASAVHAVE 64
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D+ +V +R+RFA + + + D + S L+L + R ++ KVVANIP+NI+
Sbjct: 65 LDRDLVSGLRQRFADQARFSLQEGDVL-----SVPLTLADGRAAN----KVVANIPYNIT 115
Query: 231 TDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
++++LL P+ + +VLLLQ+E A R+
Sbjct: 116 GPLLERLLGRLDRPVDHPYQRLVLLLQKEVAQRI 149
>gi|148543450|ref|YP_001270820.1| dimethyladenosine transferase [Lactobacillus reuteri DSM 20016]
gi|184152859|ref|YP_001841200.1| dimethyladenosine transferase [Lactobacillus reuteri JCM 1112]
gi|227363600|ref|ZP_03847717.1| dimethyladenosine transferase [Lactobacillus reuteri MM2-3]
gi|325681794|ref|ZP_08161313.1| dimethyladenosine transferase [Lactobacillus reuteri MM4-1A]
gi|166987695|sp|A5VI09.1|RSMA_LACRD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226732591|sp|B2G5I8.1|RSMA_LACRJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|148530484|gb|ABQ82483.1| dimethyladenosine transferase [Lactobacillus reuteri DSM 20016]
gi|183224203|dbj|BAG24720.1| dimethyladenosine transferase [Lactobacillus reuteri JCM 1112]
gi|227071396|gb|EEI09702.1| dimethyladenosine transferase [Lactobacillus reuteri MM2-3]
gi|324978885|gb|EGC15833.1| dimethyladenosine transferase [Lactobacillus reuteri MM4-1A]
Length = 297
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 84/144 (58%), Gaps = 3/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ + + + AA + D V+EIGPG G+LT L A VLA+E DQ +
Sbjct: 25 KKSFGQNFLTDLNVLKNIVEAADITANDNVIEIGPGIGALTEQLAQAAGEVLALEIDQDL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E + D +KV+ +D ++ ++ + F K S KVVAN+P+ I++ ++
Sbjct: 85 IPVLKEVLSPYDDVKVINQDVLQANLPELIKKEF---KDPSRPIKVVANLPYYITSPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL ++ + +++Q+E A RL
Sbjct: 142 NLLASPVEWATICVMMQKEVAQRL 165
>gi|423334290|ref|ZP_17312070.1| dimethyladenosine transferase [Lactobacillus reuteri ATCC 53608]
gi|337728098|emb|CCC03188.1| dimethyladenosine transferase [Lactobacillus reuteri ATCC 53608]
Length = 297
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 84/144 (58%), Gaps = 3/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ + + + AA + D V+EIGPG G+LT L A VLA+E DQ +
Sbjct: 25 KKSFGQNFLTDLNVLKNIVEAADITANDNVIEIGPGIGALTEQLAQAAGEVLALEIDQDL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E + D +KV+ +D ++ ++ + F K S KVVAN+P+ I++ ++
Sbjct: 85 IPVLKEVLSPYDNVKVINQDVLQANLPELIKKEF---KDPSRPIKVVANLPYYITSPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL ++ + +++Q+E A RL
Sbjct: 142 NLLASPVEWATICVMMQKEVAQRL 165
>gi|336430562|ref|ZP_08610507.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
gi|336017767|gb|EGN47524.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
Length = 290
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 96/179 (53%), Gaps = 8/179 (4%)
Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
TI+ L+ +K GQ++++ ++ + + AA + E D VLEIGPG G++T L
Sbjct: 9 GTIEVLHKYNFNFQKKFGQNFLIEPKVLETIVEAAEIGEEDCVLEIGPGIGTMTQYLAEQ 68
Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
V+A+E D+ ++ ++++ ++ + ++ D +K + + R K+ KVV
Sbjct: 69 AGEVVAVEIDKALIPILKDTLSAYSNVTIINADILKLDMEELV-----REKNGGKPVKVV 123
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
AN+P+ I+T +I QL + +++Q E A R+ V P T +Y +++ V +YS
Sbjct: 124 ANLPYYITTPIIMQLFESHVPLESITIMVQTEVAERMQVGPG--TKDYGALSLAVQYYS 180
>gi|255576485|ref|XP_002529134.1| dimethyladenosine transferase, putative [Ricinus communis]
gi|223531413|gb|EEF33247.1| dimethyladenosine transferase, putative [Ricinus communis]
Length = 350
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + + ++ D++LEIGPGTG+LT LL AG V+A+E D MV
Sbjct: 29 KSKGQHILKNPLLVDTIVEKSGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDPRMV 88
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ RF ++LKV+Q D +K + F VANIP+ IS+ +
Sbjct: 89 LELQRRFQGTPMSNRLKVIQGDVLKTDL--------------PYFDICVANIPYQISSPL 134
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL F +++ Q E A+RLV
Sbjct: 135 TFKLLNHQPSFRCAIIMFQREFAMRLV 161
>gi|203288028|ref|YP_002223043.1| dimethyladenosine transferase [Borrelia recurrentis A1]
gi|201085248|gb|ACH94822.1| dimethyladenosine transferase [Borrelia recurrentis A1]
Length = 274
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 83/154 (53%), Gaps = 12/154 (7%)
Query: 107 ALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATV 166
L +K PRK GQ+Y++N I ++ A +++ + + EIGPG G++T LLN +
Sbjct: 14 VLKNKNIAPRKIWGQNYLINENIRAKIIDALDIKKNEKIWEIGPGLGAMTATLLNKANFL 73
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
A E D ++ E+F + K+++ DF+K + ++ K+V+N+P
Sbjct: 74 TAFEIDPKYSEILNEKFGQLKNFKLIEGDFLKTY-----------KQEKKSINKIVSNLP 122
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
+NI++ VI L+ +I +V +Q+E A R++
Sbjct: 123 YNIASKVISTLIE-DEILIHMVFTVQKELADRMI 155
>gi|450034192|ref|ZP_21834212.1| dimethyladenosine transferase [Streptococcus mutans M21]
gi|449196615|gb|EMB97870.1| dimethyladenosine transferase [Streptococcus mutans M21]
Length = 291
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K S + + + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLCDFDNIKVVNEDILK----SDLQTCIKEFANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYY 179
>gi|336431714|ref|ZP_08611556.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 2_1_58FAA]
gi|336019733|gb|EGN49455.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 2_1_58FAA]
Length = 291
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI L +K GQ++++++ + D++ +A + + D VLEIGPG G++T L A
Sbjct: 12 TIAVLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDFVLEIGPGIGTMTQYLACAA 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A+E D+ ++ ++ + D ++V+ ED +K I ++++ KVVA
Sbjct: 72 GKVAAVEIDKALIPILEDTLDGYDNVQVINEDVLKVDIAE-----LAKQENEGKPIKVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 127 NLPYYITTPIIMGLFENHVPMKSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 182
>gi|154505613|ref|ZP_02042351.1| hypothetical protein RUMGNA_03152 [Ruminococcus gnavus ATCC 29149]
gi|153794052|gb|EDN76472.1| putative dimethyladenosine transferase [Ruminococcus gnavus ATCC
29149]
Length = 307
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI L +K GQ++++++ + D++ +A + + D VLEIGPG G++T L A
Sbjct: 28 TIAVLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDFVLEIGPGIGTMTQYLACAA 87
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A+E D+ ++ ++ + D ++V+ ED +K I ++++ KVVA
Sbjct: 88 GKVAAVEIDKALIPILEDTLDGYDNVQVINEDVLKVDIAE-----LAKQENEGKPIKVVA 142
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 143 NLPYYITTPIIMGLFENHVPMKSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 198
>gi|227544731|ref|ZP_03974780.1| dimethyladenosine transferase [Lactobacillus reuteri CF48-3A]
gi|338203745|ref|YP_004649890.1| dimethyladenosine transferase [Lactobacillus reuteri SD2112]
gi|227185271|gb|EEI65342.1| dimethyladenosine transferase [Lactobacillus reuteri CF48-3A]
gi|336448985|gb|AEI57600.1| dimethyladenosine transferase [Lactobacillus reuteri SD2112]
Length = 297
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 84/144 (58%), Gaps = 3/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ + + + AA + D V+EIGPG G+LT L A VLA+E DQ +
Sbjct: 25 KKSFGQNFLTDLNVLKNIVEAADITANDNVIEIGPGIGALTEQLAQAAGEVLALEIDQDL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E + D +KV+ +D ++ ++ + F K S KVVAN+P+ I++ ++
Sbjct: 85 IPVLKEVLSPYDNVKVINQDVLQANLPELIKKEF---KDPSRPIKVVANLPYYITSPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL ++ + +++Q+E A RL
Sbjct: 142 NLLASPVEWATICVMMQKEVAQRL 165
>gi|296447968|ref|ZP_06889875.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b]
gi|296254535|gb|EFH01655.1| dimethyladenosine transferase [Methylosinus trichosporium OB3b]
Length = 287
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 99 DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
DD + + G K+LGQ+++ + + ++A AA EG ++EIGPG G LT
Sbjct: 3 DDLPPLREVVAKHGLMASKALGQNFLFDLNLTARIARAAGPLEGATIVEIGPGPGGLTRA 62
Query: 159 LLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCH----IRSHMLSLFERR 212
LL GA V+A+E+D + +RE A +L +++ D + +R H L
Sbjct: 63 LLAEGAGRVIAVERDARCMPALREIEARYPGRLVIVEGDALAADPAQLVREHGL------ 116
Query: 213 KSSSGFAKVVANIPFNISTDVIKQLL---PMGDIFSEVVLLLQEETALRLVEPSLRTSEY 269
G A++ AN+P+NI+T+++ + + P +F VL+ Q E ALR+V + ++Y
Sbjct: 117 ---GGPARICANLPYNIATELLARWIEAEPWPSVFDRYVLMFQREVALRIVATPAQRADY 173
Query: 270 RPINIFVNFYS 280
+ + + +
Sbjct: 174 GRLAVLCGWRT 184
>gi|403382814|ref|ZP_10924871.1| dimethyladenosine transferase [Paenibacillus sp. JC66]
Length = 294
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 96/164 (58%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA ++E + VLEIGPG G+LT L V+A+E DQ +
Sbjct: 27 KKSLGQNFLVDQNILARIVDAANLREDEGVLEIGPGIGALTEKLAREAGRVVAVEIDQRL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++R+ + ++ V+ D +K ++ +F++ + VVAN+P+ ++T ++
Sbjct: 87 LPILRDTLSVYPKVTVIHGDVLKLSLK----EIFDQHFAKDQPVSVVANLPYYVTTPIVM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
+LL ++V+++Q+E A R+ S EY ++I V +Y
Sbjct: 143 KLLEEKLPLKQIVVMIQKEVAERMTA-SPGGKEYGSLSIAVQYY 185
>gi|379709381|ref|YP_005264586.1| rRNA methyltransferase (Carbomycin-resistance protein) [Nocardia
cyriacigeorgica GUH-2]
gi|374846880|emb|CCF63950.1| rRNA methyltransferase (Carbomycin-resistance protein) [Nocardia
cyriacigeorgica GUH-2]
Length = 271
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK L Q+++++ + AA V GD+VLEIG G G LT LL G V+A EKD+H
Sbjct: 16 RKRLSQNFLVDPRAAQTVVRAAGVAAGDLVLEIGAGDGMLTRQLLAKGYRVIAYEKDRHY 75
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ R+A +++V+ DF + H FA VVANIPF ISTD+++
Sbjct: 76 SRRLHARYAGDPRIRVIHNDFRRAH------------APGQPFA-VVANIPFGISTDILR 122
Query: 236 QLLPMGDIFSEVVLLLQEETA 256
L + S LL Q E A
Sbjct: 123 WCLDARHLTS-ATLLTQREFA 142
>gi|407002087|gb|EKE18935.1| dimethyladenosine transferase [uncultured bacterium]
Length = 265
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 91/144 (63%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + E+ ++ +A + + D+V+EIGPG G+LT +L V+AIE D +
Sbjct: 5 KKSLGQNFLKDDEVLSRIIESANLSQDDVVIEIGPGQGALTELLAKNCRKVVAIELDDRL 64
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E+F + ++ +D +K ++ +++ +E ++G+ KVVANIP+ I+ +I+
Sbjct: 65 IPILQEKFKDNKNVDIIHDDILKLNL-PELVTGYEL--PTTGY-KVVANIPYYITAPIIR 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
L EV+L++Q+E A R+
Sbjct: 121 LFLETKIPPREVILMVQKEVAERI 144
>gi|339300821|ref|ZP_08649950.1| dimethyladenosine transferase [Streptococcus agalactiae ATCC 13813]
gi|417006159|ref|ZP_11944729.1| dimethyladenosine transferase [Streptococcus agalactiae FSL S3-026]
gi|319745733|gb|EFV98030.1| dimethyladenosine transferase [Streptococcus agalactiae ATCC 13813]
gi|341576340|gb|EGS26751.1| dimethyladenosine transferase [Streptococcus agalactiae FSL S3-026]
Length = 290
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D ++V+ +D +K +++ + + K+ KVVAN+P+ I+T ++
Sbjct: 81 IPILADTLRDFDNVQVVNKDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R + T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADR-ISAMPNTKAYGSLSIAVQYY 179
>gi|308171933|ref|YP_003918638.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
amyloliquefaciens DSM 7]
gi|384157655|ref|YP_005539728.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Bacillus
amyloliquefaciens TA208]
gi|384162448|ref|YP_005543827.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
amyloliquefaciens LL3]
gi|384166670|ref|YP_005548048.1| dimethyladenosine transferase [Bacillus amyloliquefaciens XH7]
gi|307604797|emb|CBI41168.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
amyloliquefaciens DSM 7]
gi|328551743|gb|AEB22235.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Bacillus amyloliquefaciens TA208]
gi|328910003|gb|AEB61599.1| dimethyladenosine 16S ribosomal RNA transferase [Bacillus
amyloliquefaciens LL3]
gi|341825949|gb|AEK87200.1| dimethyladenosine transferase [Bacillus amyloliquefaciens XH7]
Length = 293
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 94/166 (56%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A + + V+EIGPG G+LT L V+A E DQ +
Sbjct: 24 KKSLGQNFLIDTNILDRIVDHAEITDRTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ D +K ++ S+ E + V AN+P+ ++T +I
Sbjct: 84 LPILNDTLSPYDNVTIIHHDVLKADVK----SVIEEQFQDCDEIMVTANLPYYVTTPIIM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 140 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYT 183
>gi|219115097|ref|XP_002178344.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410079|gb|EEC50009.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 322
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 17/148 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P SLGQH++ N + + A ++ D+VLEIGPGTG++T +L V+A+E D
Sbjct: 39 PNTSLGQHFLKNPAVISSIIDKAGLKATDVVLEIGPGTGNMTVPMLQRAKKVVALEFDSR 98
Query: 175 MVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
MV V +R D +L+V+Q D +K + F ++AN+P+ IS+
Sbjct: 99 MVREVLKRTEGTDLAHKLQVIQGDAMKT--------------AWPFFDCMIANLPYQISS 144
Query: 232 DVIKQLLPMGDIFSEVVLLLQEETALRL 259
V+ +LL +F VL+ QEE ALRL
Sbjct: 145 QVVFKLLSHRPMFRCAVLMFQEEFALRL 172
>gi|336055350|ref|YP_004563637.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
kefiranofaciens ZW3]
gi|333958727|gb|AEG41535.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
kefiranofaciens ZW3]
Length = 294
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q D V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQAAILGIVQAADIQPNDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERF-ASID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ ID + K+L +D +K + + + F+ +K KVVAN+P+
Sbjct: 85 PEILQNELPPKIDNQPLSQRFKLLLKDVLKANFKEDLAGFFDLKKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L F+ + L++Q+E A RL E S EY P+ I V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EASPGNKEYGPLTISV 187
>gi|329767929|ref|ZP_08259441.1| dimethyladenosine transferase [Gemella haemolysans M341]
gi|328838592|gb|EGF88195.1| dimethyladenosine transferase [Gemella haemolysans M341]
Length = 286
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 93/177 (52%), Gaps = 5/177 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ++++++ I +++ A V E V+EIGPG GSLT L
Sbjct: 8 TFEILKKHGFTFKKSLGQNFLIDANILNRIVDGAGVNENIGVIEIGPGIGSLTEALAKKA 67
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V++ E D ++ ++ E A ++++ D +K + + + S VVA
Sbjct: 68 KKVISFEIDGRLLPILSETLADYSNVEIINNDILKVDVD----KIIAEKMSDCEKIMVVA 123
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T ++ L+ + V+++Q+E A RL + T +Y + I +N+Y+
Sbjct: 124 NLPYYITTPILTHLIENTEKIDGYVVMMQKEVANRL-NAKVGTKDYNSLTILLNYYT 179
>gi|300853385|ref|YP_003778369.1| dimethyladenosine transferase [Clostridium ljungdahlii DSM 13528]
gi|300433500|gb|ADK13267.1| dimethyladenosine transferase [Clostridium ljungdahlii DSM 13528]
Length = 280
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ++++++ + D + +A + + D ++EIGPG G+LT LL V AIE D ++
Sbjct: 19 KSLGQNFLIDNTVLDDIVNSADISKEDFIIEIGPGVGTLTRELLKKAGKVCAIELDSDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E +++ +D +K F + K+VAN+P+ ++T +I +
Sbjct: 79 PILKEELKDFKNFELIHKDALKID--------FNKIIDDEKNVKIVANLPYYVTTPIITR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E R+ EP+ + +Y ++I V +Y
Sbjct: 131 LLNENYNFKTLTIMIQKEVGERISSEPNCK--QYGALSILVQYY 172
>gi|429735814|ref|ZP_19269737.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156738|gb|EKX99359.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 292
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 9/165 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AA + D VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDRSVVQGIVDAAELSPADTVLEIGPGIGTLTQGLAETGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + ++ D +K +I S +L L R + KVVAN+P+ I+T +I
Sbjct: 87 AVLAETLKGYDNVTIVPGDILKLNI-SEILGLPNRSRF-----KVVANLPYYITTPIIMT 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V ++Q+E A+R+ P + +Y ++I V +++
Sbjct: 141 LLEQRLPIERLVTMVQKEVAVRMTARPG--SKDYGALSIAVQYFT 183
>gi|342733124|ref|YP_004771963.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384456492|ref|YP_005669090.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417959035|ref|ZP_12601906.1| Ribosomal RNA adenine methylase transferase-like protein
[Candidatus Arthromitus sp. SFB-1]
gi|417966699|ref|ZP_12608001.1| dimethyladenosine transferase [Candidatus Arthromitus sp. SFB-5]
gi|417967856|ref|ZP_12608915.1| dimethyladenosine transferase [Candidatus Arthromitus sp. SFB-co]
gi|418015470|ref|ZP_12655035.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373383|ref|ZP_12965472.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330579|dbj|BAK57221.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345505805|gb|EGX28099.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984838|dbj|BAK80514.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380334329|gb|EIA24759.1| Ribosomal RNA adenine methylase transferase-like protein
[Candidatus Arthromitus sp. SFB-1]
gi|380340167|gb|EIA28794.1| dimethyladenosine transferase [Candidatus Arthromitus sp. SFB-5]
gi|380340644|gb|EIA29215.1| dimethyladenosine transferase [Candidatus Arthromitus sp. SFB-co]
gi|380341219|gb|EIA29712.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 277
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 98/179 (54%), Gaps = 10/179 (5%)
Query: 103 ATIKALNSKGRFPRKS-LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+++ L K F K LGQ++ N + +++ + + DIV+EIGPG G LT LL
Sbjct: 2 TSVRELQRKYGFLFKGYLGQNFFNNDILLNEILDKLDITKNDIVIEIGPGFGVLTEKLLL 61
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V++IE D ++ ++ E D K++ DF+K ++ E + +G KV
Sbjct: 62 KSKKVISIEIDDRLIPILNENLKEYDNFKLIHNDFMKMNL--------EDLGNLNGRFKV 113
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
VANIP+ I+T ++++L + +++Q+E R++ ++ T EY +++FVN++S
Sbjct: 114 VANIPYYITTPILEKLFKSELSIDFIAIMVQKEVGNRIL-ANVSTKEYGSLSVFVNYFS 171
>gi|335357755|ref|ZP_08549625.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus animalis KCTC 3501]
Length = 298
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+ S G +KSLGQ+++ + I +++ AAA V D V+EIGPG G+LT L V+
Sbjct: 18 MESYGLTFKKSLGQNFLTDINILNKIVAAAEVTPEDDVIEIGPGIGALTEQLAKNAHQVM 77
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ + A D + V+ +D +K + ++ L + K+VAN+P+
Sbjct: 78 ALEIDDRLIPVLADTLAPYDNVTVVHQDVLK----ADLVELIAKNFDGKHKIKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
I+T +I LL F +V+++Q+E A RL
Sbjct: 134 YITTPIILHLLEAPVDFDRIVVMMQKEVADRL 165
>gi|229828784|ref|ZP_04454853.1| hypothetical protein GCWU000342_00858 [Shuttleworthia satelles DSM
14600]
gi|229793378|gb|EEP29492.1| hypothetical protein GCWU000342_00858 [Shuttleworthia satelles DSM
14600]
Length = 290
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 99/179 (55%), Gaps = 8/179 (4%)
Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
+TI L G +K GQ+++++ I + + AA + D +LEIGPG G+LT L A
Sbjct: 9 STIAVLEKYGFSFQKKYGQNFLIDRHILEGIVDAAQISREDFILEIGPGIGTLTQYLCEA 68
Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
G VLA+E D+ ++ ++ + +S + ++V+ D +K LS K++S K+V
Sbjct: 69 GREVLAVELDRKLIPILADTLSSYNNVEVICHDVLKLD-----LSGLIAEKNASRPIKLV 123
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
AN+P+ I+T +I L + +++Q+E A R+ E P + +Y +++ V +Y+
Sbjct: 124 ANLPYYITTPIIMSLFESHLPLESITIMVQKELADRMQEGPG--SKDYGALSLAVQYYA 180
>gi|339637700|emb|CCC16666.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
pentosus IG1]
Length = 295
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 91/165 (55%), Gaps = 9/165 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VLA E D +
Sbjct: 25 KKSLGQNFLTDQNVLHNIVATADIGVNDNVIEIGPGIGALTEYLARAAHHVLAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + V+ +D +K + + + + + K+VAN+P+ I+T ++
Sbjct: 85 LPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPYYITTPILM 140
Query: 236 QLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
LL GD+ F +V+++Q+E A RL EP T Y + I V +
Sbjct: 141 NLL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQY 182
>gi|295689681|ref|YP_003593374.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756]
gi|295431584|gb|ADG10756.1| dimethyladenosine transferase [Caulobacter segnis ATCC 21756]
Length = 272
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 11/156 (7%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
+AL RKS GQH++L+ + ++A A + EGD V+E+GPG G LT LL GA
Sbjct: 11 EALERHDLMARKSFGQHFLLDLNVTRKIARLAQIGEGDTVVEVGPGPGGLTRALLETGAR 70
Query: 166 VLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V+AIEKD + L+ E D +L++++ D +K + +++ G A VV+N
Sbjct: 71 VVAIEKDSRFLPLLSEVAEVADGRLELVEGDALKV----------DAAQAAGGPAHVVSN 120
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
+P+N+ T ++ L + L+ Q+E A R+V
Sbjct: 121 LPYNVGTQLLINWLTGPFRPLSMTLMFQKEVADRIV 156
>gi|76799748|ref|ZP_00781834.1| Dimethyladenosine transferase
(S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
dimethyltransferase) (16S rRNA dimethylase) (Highlevel
kasugamycin resistance protein ksgA)
(Kasugamycindimethyltransferase) [Streptococcus
agalactiae 18RS21]
gi|76584901|gb|EAO61573.1| Dimethyladenosine transferase
(S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
dimethyltransferase) (16S rRNA dimethylase) (Highlevel
kasugamycin resistance protein ksgA)
(Kasugamycindimethyltransferase) [Streptococcus
agalactiae 18RS21]
Length = 171
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 85/144 (59%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + +G V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKGVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + A D ++V+ +D +K +++ + + K+ KVVAN+P+ I+T ++
Sbjct: 81 IPILADTLARFDNVQVVNQDILKADLQTQIQAF----KNPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
L+ F+E V+++Q+E A R+
Sbjct: 137 HLIESKIPFAEFVVMIQKEVADRI 160
>gi|356495382|ref|XP_003516557.1| PREDICTED: probable dimethyladenosine transferase-like [Glycine
max]
Length = 345
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 80/147 (54%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH +N I D + +A+ D VLEIGPGTG+LT LL A V+AIE D MV
Sbjct: 40 KSRGQHIFINPRILDTIFRRSAINPTDTVLEIGPGTGNLTLKLLEAAHKVVAIEIDHRMV 99
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ +R D+L+V++ D M + F R F VVANIP+ IS+ +
Sbjct: 100 QVLEKRVLQRGLQDKLRVIERD--------AMRAPFPR------FDLVVANIPYRISSPL 145
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +L+ F LLLQ+E A RL+
Sbjct: 146 VIKLVYGATPFRSATLLLQKEFARRLL 172
>gi|421077159|ref|ZP_15538130.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans JBW45]
gi|392524547|gb|EIW47702.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans JBW45]
Length = 280
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 93/165 (56%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AA + +GD VLEIGPG G+LT L AGA V A+E D+ ++
Sbjct: 25 KKLGQNFLIDEHVVQSIVKAANITQGDAVLEIGPGIGTLTQGLAEAGAAVTAVEIDRRLI 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + + ++V+ D ++ I ++ ++ KVVAN+P+ I+T +I
Sbjct: 85 EVLAKTLEGYENIRVVHGDILRIDI---------GKEVAAPRYKVVANLPYYITTPIIMG 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
LL +V ++Q+E A R+V P T +Y +++ V +Y+
Sbjct: 136 LLEAHMPVDILVTMVQKEVAQRMVAVPG--TKDYGSLSVAVQYYT 178
>gi|325179921|emb|CCA14323.1| dimethyladenosine transferase putative [Albugo laibachii Nc14]
Length = 311
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 20/157 (12%)
Query: 109 NSKGRF---PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
NS GR P S+GQH++ N I Q+ + AA++ D+ LE+GPGTG+LT +LN
Sbjct: 20 NSLGRTLANPNTSIGQHFLKNPMIAAQIVSKAALRSTDVCLEVGPGTGNLTMKILNQAKK 79
Query: 166 VLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
V+A+E D M+ +++R + + L+V+ D ++ + F +
Sbjct: 80 VIAVEYDLRMIAEIQKRVQNTEHAKHLQVIHGDVIRVQL--------------PFFDVCI 125
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
AN+P+ IS+ + +LL +F V++ QEE A RL
Sbjct: 126 ANLPYQISSPFVFKLLAHRPMFRCAVVMFQEEFAKRL 162
>gi|434387825|ref|YP_007098436.1| dimethyladenosine transferase [Chamaesiphon minutus PCC 6605]
gi|428018815|gb|AFY94909.1| dimethyladenosine transferase [Chamaesiphon minutus PCC 6605]
Length = 284
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 94/156 (60%), Gaps = 10/156 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQH++ N ++ D++ AA + D +LEIGPGTG LT L+ A + V+A+E D+ +
Sbjct: 4 KKQFGQHWLRNEQVLDRIITAAKIAPTDRILEIGPGTGILTRRLVAAASAVVAVEIDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ ++ +D +L+ DF+ + + L+ F + + ++ KVVANIP+NI+ +++
Sbjct: 64 SALLVKKMGHLDNFILLENDFLNLDVDGN-LTAFPKFQQAN---KVVANIPYNITGPILE 119
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL-VEPSLR 265
+LL P F +VLL+Q+E RL +PS +
Sbjct: 120 KLLGNIVHPAERPFDSIVLLVQKEVGDRLFAKPSTK 155
>gi|373850578|ref|ZP_09593379.1| Ribosomal RNA small subunit methyltransferase A [Opitutaceae
bacterium TAV5]
gi|372476743|gb|EHP36752.1| Ribosomal RNA small subunit methyltransferase A [Opitutaceae
bacterium TAV5]
Length = 289
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
G P++ LGQ+++++ I + A V GD V+EIGPG G+LT LL AGA V A+E+
Sbjct: 16 GHTPKRFLGQNFLVDGNIVKKSLELAGVAPGDTVVEIGPGLGTLTRALLEAGACVWAVER 75
Query: 172 D----QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIP 226
D H+ G + + F + L L+ D V+ + + + E S+S A K+VAN+P
Sbjct: 76 DATLHAHLAGTLAKEFPATFHL--LEGDAVEHPLAALPVGKEEADSSTSAPAFKIVANLP 133
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALR 258
+ IST + +L G + + +VL+LQ E A R
Sbjct: 134 YAISTPWMDAVL-SGPLPARMVLMLQLEAAQR 164
>gi|217073100|gb|ACJ84909.1| unknown [Medicago truncatula]
Length = 225
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + + ++ D+VLEIGPGTG+LT LL AG V+A+E D MV
Sbjct: 28 KSKGQHILKNPLLVDTIVQKSGIKTTDVVLEIGPGTGNLTKKLLEAGKKVIAVEIDPRMV 87
Query: 177 GLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +RF +L V+Q D +K + F VANIP+ IS+ +
Sbjct: 88 LELNKRFQGTPSSRLTVIQGDVLKTEL--------------PYFDICVANIPYQISSPLT 133
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV 260
+LL F +++ Q E A+RLV
Sbjct: 134 FKLLKHQPAFRCAIIMFQREFAMRLV 159
>gi|295108631|emb|CBL22584.1| dimethyladenosine transferase [Ruminococcus obeum A2-162]
Length = 290
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L G +K GQ++++++ + D++ A+ + + D VLEIGPG G++T L ++
Sbjct: 12 TIEVLQKYGFVFQKRFGQNFLIDTHVLDRIIQASEITKDDFVLEIGPGIGTMTQYLADSA 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A+E D ++ ++++ D + V+ D +K IR K+ KVVA
Sbjct: 72 REVTAVEIDDALIPILKDTLKEWDNVNVIHGDILKTDIRK-----IADEKNQGRPIKVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ + + +Y +++ V +Y+
Sbjct: 127 NLPYYITTPIIMGLFESHVPVDSITVMVQKEVADRM-QTGPGSKDYGALSLAVQYYA 182
>gi|290581127|ref|YP_003485519.1| dimethyladenosine transferase [Streptococcus mutans NN2025]
gi|449969654|ref|ZP_21813346.1| dimethyladenosine transferase [Streptococcus mutans 2VS1]
gi|450057323|ref|ZP_21842516.1| dimethyladenosine transferase [Streptococcus mutans NLML4]
gi|450066530|ref|ZP_21846013.1| dimethyladenosine transferase [Streptococcus mutans NLML9]
gi|450092911|ref|ZP_21856324.1| dimethyladenosine transferase [Streptococcus mutans W6]
gi|450150084|ref|ZP_21876433.1| dimethyladenosine transferase [Streptococcus mutans 14D]
gi|450164985|ref|ZP_21881628.1| dimethyladenosine transferase [Streptococcus mutans B]
gi|254998026|dbj|BAH88627.1| dimethyladenosine transferase [Streptococcus mutans NN2025]
gi|449173988|gb|EMB76510.1| dimethyladenosine transferase [Streptococcus mutans 2VS1]
gi|449205395|gb|EMC06143.1| dimethyladenosine transferase [Streptococcus mutans NLML4]
gi|449208821|gb|EMC09384.1| dimethyladenosine transferase [Streptococcus mutans NLML9]
gi|449217702|gb|EMC17737.1| dimethyladenosine transferase [Streptococcus mutans W6]
gi|449233937|gb|EMC32977.1| dimethyladenosine transferase [Streptococcus mutans 14D]
gi|449241100|gb|EMC39745.1| dimethyladenosine transferase [Streptococcus mutans B]
Length = 291
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VSILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|428203434|ref|YP_007082023.1| dimethyladenosine transferase [Pleurocapsa sp. PCC 7327]
gi|427980866|gb|AFY78466.1| dimethyladenosine transferase [Pleurocapsa sp. PCC 7327]
Length = 284
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 86/150 (57%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + + AA +++ D +LEIGPGTG LT LL +V+A+E D+
Sbjct: 18 PRKRFAQHWLRSETALNNIVEAARLKKSDRLLEIGPGTGILTRRLLPEVQSVVAVEIDRD 77
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + ++ +LQ D + I S ++ F R ++ + KVVANIP+NI+ ++
Sbjct: 78 LCKKLVKSLGKVENFLLLQGDILSLDIESSLVD-FPRFQNPN---KVVANIPYNITGSIL 133
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P + +VLLLQ+E A RL
Sbjct: 134 EKLLGTIANPTTKNYELIVLLLQKEVAERL 163
>gi|339497389|ref|ZP_08658365.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc pseudomesenteroides KCTC 3652]
Length = 303
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + + + AA + D V+EIGPG G+LT L + VL
Sbjct: 25 LNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALTEQLARSAKKVL 84
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ + D +KV++ D +K + + F + K+VAN+P+
Sbjct: 85 AFEIDSQMVEVLADTLKPYDNVKVIENDVLKVDLAKVISEEF----GDNAHVKIVANLPY 140
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ QLL + +V+++Q E A RL ++ T Y + + + +++
Sbjct: 141 YITTPILIQLLRSNINWDNIVVMMQREVADRL-NAAVGTKSYGVLTLTIQYFA 192
>gi|343526285|ref|ZP_08763235.1| dimethyladenosine transferase [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343394236|gb|EGV06784.1| dimethyladenosine transferase [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 291
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKHVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ ++ ++ + + +K++ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDERLMPILADTLQEFENVKIINEDILKSDLQARIKEF----SNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESRIPFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|116618707|ref|YP_819078.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|381337085|ref|YP_005174860.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Leuconostoc
mesenteroides subsp. mesenteroides J18]
gi|122271093|sp|Q03VR7.1|RSMA_LEUMM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|116097554|gb|ABJ62705.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|356645051|gb|AET30894.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc mesenteroides subsp. mesenteroides J18]
Length = 295
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + + + AA + D V+EIGPG G+LT L + VL
Sbjct: 17 LNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALTEQLARSAKKVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ + D +KV++ D +K + + F + K+VAN+P+
Sbjct: 77 AFEIDSQMVEVLADTLKPYDNVKVIENDVLKVDLAKVISEEF----GDNAHVKIVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ QLL + +V+++Q E A RL ++ T Y + + + +++
Sbjct: 133 YITTPILIQLLRSNINWDNIVVMMQREVADRL-NAAVGTKSYGVLTLTIQYFA 184
>gi|448820147|ref|YP_007413309.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
plantarum ZJ316]
gi|448273644|gb|AGE38163.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
plantarum ZJ316]
Length = 296
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 9/165 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VLA E D +
Sbjct: 26 KKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYLARAAHHVLAFEIDDRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + V+ +D +K + + + + + K+VAN+P+ I+T ++
Sbjct: 86 LPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPYYITTPILM 141
Query: 236 QLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
+L GD+ F +V+++Q+E A RL EP T Y + I V +
Sbjct: 142 NIL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQY 183
>gi|391228579|ref|ZP_10264785.1| dimethyladenosine transferase (rRNA methylation) [Opitutaceae
bacterium TAV1]
gi|391218240|gb|EIP96660.1| dimethyladenosine transferase (rRNA methylation) [Opitutaceae
bacterium TAV1]
Length = 289
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
G P++ LGQ+++++ I + A V GD V+EIGPG G+LT LL AGA V A+E+
Sbjct: 16 GHTPKRFLGQNFLVDGNIVKKSLELAGVAPGDTVVEIGPGLGTLTRALLEAGACVWAVER 75
Query: 172 D----QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIP 226
D H+ G + + F + L L+ D V+ + + + E S+S A K+VAN+P
Sbjct: 76 DATLHAHLAGTLAKEFPATFHL--LEGDAVEHPLAALPVDKEEADSSTSAPAFKIVANLP 133
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALR 258
+ IST + +L G + + +VL+LQ E A R
Sbjct: 134 YAISTPWMDAVL-SGPLPARMVLMLQLEAAQR 164
>gi|254555556|ref|YP_003061973.1| dimethyladenosine transferase [Lactobacillus plantarum JDM1]
gi|300767100|ref|ZP_07077013.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|254044483|gb|ACT61276.1| dimethyladenosine transferase [Lactobacillus plantarum JDM1]
gi|300495638|gb|EFK30793.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
Length = 296
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 9/165 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VLA E D +
Sbjct: 26 KKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYLARAAHHVLAFEIDDRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + V+ +D +K + + + + + K+VAN+P+ I+T ++
Sbjct: 86 LPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPYYITTPILM 141
Query: 236 QLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
+L GD+ F +V+++Q+E A RL EP T Y + I V +
Sbjct: 142 NIL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQY 183
>gi|418274151|ref|ZP_12889649.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|376009717|gb|EHS83043.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 295
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 9/173 (5%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+++ G +KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VL
Sbjct: 17 MHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYLARAAHHVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ E A D + V+ +D +K + + + + + K+VAN+P+
Sbjct: 77 AFEIDDRLLPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPY 132
Query: 228 NISTDVIKQLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
I+T ++ +L GD+ F +V+++Q+E A RL EP T Y + I V +
Sbjct: 133 YITTPILMNIL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQY 182
>gi|308179573|ref|YP_003923701.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|308045064|gb|ADN97607.1| dimethyladenosine transferase [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 296
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 9/165 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VLA E D +
Sbjct: 26 KKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYLARAAHHVLAFEIDDRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + V+ +D +K + + + + + K+VAN+P+ I+T ++
Sbjct: 86 LPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPYYITTPILM 141
Query: 236 QLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
+L GD+ F +V+++Q+E A RL EP T Y + I V +
Sbjct: 142 NIL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQY 183
>gi|392375231|ref|YP_003207064.1| dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Candidatus
Methylomirabilis oxyfera]
gi|258592924|emb|CBE69233.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Candidatus
Methylomirabilis oxyfera]
Length = 312
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 90/164 (54%), Gaps = 14/164 (8%)
Query: 102 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
H T L P++ LGQ ++++ + D + AA V D+V+EIGPGTG LT L
Sbjct: 15 HETRALLRQYHLLPKRGLGQSFLVSPTVRDLILRAADVGPQDLVVEIGPGTGVLTEGLAE 74
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKV-----LQEDFVKCHIRSHMLSLFERRKSSS 216
++AIE+D + L+ ER + + L+ DFV ++ M + R
Sbjct: 75 QAGRLIAIERDPGLHRLLAERLGDRPTVSLICGDALEFDFV--NVCGTMCPAYTR----- 127
Query: 217 GFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
AK+V+N+P++++T +I QL+P+ FS +++++Q E A RL+
Sbjct: 128 --AKLVSNLPYSVATPLILQLIPLQRYFSFLLVMVQREVAQRLL 169
>gi|257126070|ref|YP_003164184.1| dimethyladenosine transferase [Leptotrichia buccalis C-1013-b]
gi|257050009|gb|ACV39193.1| dimethyladenosine transferase [Leptotrichia buccalis C-1013-b]
Length = 287
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ +S ++D + A + E VLEIGPG G LT L+ + A E D +
Sbjct: 23 KKKYGQNFLNDSNLSDDILDVANIDEKTEVLEIGPGLGFLTEKLIENSKFLTAFEIDDDL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ + ++F + K++ +DF++ ++ + E KS KVVANIP+ I++ +I
Sbjct: 83 IPFLNKKFQKKENFKLIHQDFMEVDLKEFFEN--EENKSKKN-VKVVANIPYYITSPIIN 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
+LL + E+ L++Q+E A R+
Sbjct: 140 KLLEYRENIDEIYLMVQKEVAERI 163
>gi|238922667|ref|YP_002936180.1| dimethyladenosine transferase [Eubacterium rectale ATCC 33656]
gi|238874339|gb|ACR74046.1| dimethyladenosine transferase [Eubacterium rectale ATCC 33656]
Length = 288
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 100/177 (56%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ I +++ +A + + D++LEIGPG G++T L +
Sbjct: 10 TIEVLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMTQYLCESA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D +++ ++++ + D +KV+ +D +K I +L E + KVVA
Sbjct: 70 RQVIAVEIDTNLIPILKDTLSEYDNVKVINDDILKVDIN----ALAEEYNNGKPI-KVVA 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ + + +Y +++ V +YS
Sbjct: 125 NLPYYITTPIIMGLFESHVPIDSITIMVQKEVADRM-QAAPGKKDYGALSLAVQYYS 180
>gi|380031484|ref|YP_004888475.1| dimethyladenosine transferase [Lactobacillus plantarum WCFS1]
gi|33516929|sp|Q88Z93.1|RSMA_LACPL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|342240727|emb|CCC77961.1| dimethyladenosine transferase [Lactobacillus plantarum WCFS1]
Length = 296
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 9/173 (5%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+++ G +KSLGQ+++ + + + A A + D V+EIGPG G+LT L A VL
Sbjct: 18 MHTYGLQVKKSLGQNFLTDQNVLHNIVATADIGTNDNVIEIGPGIGALTEYLARAAHHVL 77
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D ++ ++ E A D + V+ +D +K + + + + + K+VAN+P+
Sbjct: 78 AFEIDDRLLPILDETLADYDNVTVVNQDILKADLAAMISEHLDNERP----LKLVANLPY 133
Query: 228 NISTDVIKQLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
I+T ++ +L GD+ F +V+++Q+E A RL EP T Y + I V +
Sbjct: 134 YITTPILMNIL-AGDVAFENIVVMMQKEVADRLAAEPG--TKAYGALTIAVQY 183
>gi|388543070|ref|ZP_10146362.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. M47T1]
gi|388279156|gb|EIK98726.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. M47T1]
Length = 268
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + +EGD VLEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSINAREGDRVLEIGPGQGALTEGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ +FA + Q D +K F + G +VV N+P+NIST +I
Sbjct: 70 VPILNNQFAGRGNFSLHQGDALKFD--------FHTLGAEPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL + ++ +LQ+E RL
Sbjct: 122 HLLSNASLIRDMHFMLQKEVVERL 145
>gi|418018678|ref|ZP_12658234.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus salivarius M18]
gi|345527527|gb|EGX30838.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Streptococcus salivarius M18]
Length = 290
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + + + V+ ED +K +++ + K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILEDTLRDHENVNVINEDVLKADLQTRVKEF----KNPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F+E V+++Q+E A R+ +P+ + Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFAEFVVMMQKEVADRISADPN--SKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|315654032|ref|ZP_07906948.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195]
gi|349611934|ref|ZP_08891164.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
7_1_47FAA]
gi|315488728|gb|EFU78374.1| dimethyladenosine transferase [Lactobacillus iners ATCC 55195]
gi|348608399|gb|EGY58384.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus sp.
7_1_47FAA]
Length = 295
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 95/168 (56%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I +L+ S++ L++Q+E A R + S ++ Y P+ I V
Sbjct: 141 ITTPIILKLMHSPVKISQLTLMMQKEVAER-ISASHKSKAYGPLTIAV 187
>gi|309803693|ref|ZP_07697783.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d]
gi|309804982|ref|ZP_07699040.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c]
gi|309806700|ref|ZP_07700695.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b]
gi|312874063|ref|ZP_07734098.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d]
gi|325913223|ref|ZP_08175592.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B]
gi|308164291|gb|EFO66548.1| dimethyladenosine transferase [Lactobacillus iners LactinV 11V1-d]
gi|308165742|gb|EFO67967.1| dimethyladenosine transferase [Lactobacillus iners LactinV 09V1-c]
gi|308166880|gb|EFO69064.1| dimethyladenosine transferase [Lactobacillus iners LactinV 03V1-b]
gi|311090403|gb|EFQ48812.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2052A-d]
gi|325477487|gb|EGC80630.1| dimethyladenosine transferase [Lactobacillus iners UPII 60-B]
Length = 295
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 95/168 (56%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I +L+ S++ L++Q+E A R + S ++ Y P+ I V
Sbjct: 141 ITTPIILKLMHSPVKISQLTLMMQKEVAER-ISASHKSKAYGPLTIAV 187
>gi|366163913|ref|ZP_09463668.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Acetivibrio cellulolyticus CD2]
Length = 279
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 96/165 (58%), Gaps = 9/165 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + ++ ++ A + D+V+EIGPG GS+T L + V+A+E D++++
Sbjct: 18 KSLGQNFLTDDKVVTRIVDTAEITYDDLVMEIGPGIGSMTGELASRAGKVVAVEIDKYLI 77
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++E L+++ ED +K +++ ++ R KV AN+P+ I+T +I +
Sbjct: 78 PALKENLKEFSNLEIINEDIMKVNVKDITVNGQNMR------VKVAANLPYYITTPIIMK 131
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL + +V ++Q+E A R+V +P + +Y +++ V +Y+
Sbjct: 132 LLEEENDIELMVFMVQKEVAQRMVAKPGGK--DYGALSVAVQYYA 174
>gi|227432115|ref|ZP_03914127.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|227352142|gb|EEJ42356.1| dimethyladenosine transferase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length = 303
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + + + AA + D V+EIGPG G+LT L + VL
Sbjct: 25 LNEYGLRAKKKFGQNFLTDLNVLHNIVEAAEITAEDYVIEIGPGIGALTEQLARSAKKVL 84
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ + D +KV++ D +K + + F + K+VAN+P+
Sbjct: 85 AFEIDSQMVEVLADTLKPYDNVKVIENDVLKVDLAKIISEEF----GDNAHVKIVANLPY 140
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ QLL + +V+++Q E A RL ++ T Y + + + +++
Sbjct: 141 YITTPILIQLLRSNINWDNIVVMMQREVADRL-NAAVGTKSYGVLTLTIQYFA 192
>gi|449903803|ref|ZP_21792346.1| dimethyladenosine transferase [Streptococcus mutans M230]
gi|449260422|gb|EMC57923.1| dimethyladenosine transferase [Streptococcus mutans M230]
Length = 291
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K S + + + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILK----SDLQTCIKEFANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYY 179
>gi|385813043|ref|YP_005849436.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
helveticus H10]
gi|323465762|gb|ADX69449.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
helveticus H10]
Length = 294
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 90/168 (53%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA + GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ D+ K++ +D +K + + + F+ K KVVAN+P+
Sbjct: 85 PEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L F+ + L++Q+E A RL E + EY P+ I V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGSKEYGPLTISV 187
>gi|443310298|ref|ZP_21039955.1| dimethyladenosine transferase [Synechocystis sp. PCC 7509]
gi|442779647|gb|ELR89883.1| dimethyladenosine transferase [Synechocystis sp. PCC 7509]
Length = 266
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 13/149 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK QH++ + ++ Q+ AA + + D +LEIGPGTG LT LL +V+A+E D+ +
Sbjct: 5 RKIFAQHWLKSEKVLHQIIKAAEITKSDRILEIGPGTGVLTRQLLPLAQSVVAVEIDRDL 64
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ ++ + +LQ D + + + + KVVANIP+NI+ +++
Sbjct: 65 CALLVKQLGKVSNFLLLQGDILSLALPDY--------DACKDLNKVVANIPYNITGPILE 116
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL 259
+LL P F +VLL+Q+E A RL
Sbjct: 117 KLLGKISTPPVQSFDSIVLLVQKEVAERL 145
>gi|345304440|ref|YP_004826342.1| ribosomal RNA small subunit methyltransferase A [Rhodothermus
marinus SG0.5JP17-172]
gi|345113673|gb|AEN74505.1| Ribosomal RNA small subunit methyltransferase A [Rhodothermus
marinus SG0.5JP17-172]
Length = 260
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 14/150 (9%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK LGQH++++ I ++ A+ D V+EIGPGTG+LT +LL + AIE D
Sbjct: 8 RKRLGQHFLVDPNIARKIVASLQAAPEDPVVEIGPGTGALTGLLLERYPHLTAIEIDPRA 67
Query: 176 VGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
V ++ R+ +D Q VL D+ E + G VV N+P+ I++ +
Sbjct: 68 VAELKARWPELDVRQADVLTVDWA------------ELAEEKGGLLHVVGNLPYYITSPI 115
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPS 263
+ LL + +E VL++Q E A RLV P
Sbjct: 116 LFALLEARAVLAEAVLMMQREVAERLVAPP 145
>gi|340500433|gb|EGR27310.1| hypothetical protein IMG5_198180 [Ichthyophthirius multifiliis]
Length = 354
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH ++N +I + +A++ DIVLEIGPGTG+LT++LL V+AIE D M+
Sbjct: 15 KSFGQHILVNPQILHSIVEKSAIRPTDIVLEIGPGTGNLTSLLLEKAKKVIAIEIDPRMI 74
Query: 177 GLVRERFA---SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ +RF + +++Q D + F VAN P+ IS+ +
Sbjct: 75 AELNKRFKYSQHASKFELIQGDAISSEF--------------PFFDVCVANTPYQISSPL 120
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +LL IF +L+ Q+E A+R V
Sbjct: 121 VFKLLSHRPIFRHAILMFQKEFAMRCV 147
>gi|161506815|ref|YP_001576769.1| dimethyladenosine transferase [Lactobacillus helveticus DPC 4571]
gi|172048354|sp|A8YX55.1|RSMA_LACH4 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|160347804|gb|ABX26478.1| Dimethyladenosine transferase [Lactobacillus helveticus DPC 4571]
Length = 294
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 90/168 (53%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA + GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ D+ K++ +D +K + + + F+ K KVVAN+P+
Sbjct: 85 PEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L F+ + L++Q+E A RL E + EY P+ I V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGSKEYGPLTISV 187
>gi|418964698|ref|ZP_13516488.1| dimethyladenosine transferase [Streptococcus constellatus subsp.
constellatus SK53]
gi|383344576|gb|EID22737.1| dimethyladenosine transferase [Streptococcus constellatus subsp.
constellatus SK53]
Length = 291
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKHVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ ++ ++ + + +K++ ED +K +++ + +
Sbjct: 65 AENAAEVMAFEIDERLMPILADTLQEFENVKIINEDILKSDLQAWIKEF----ANPELPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESRIPFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|289423351|ref|ZP_06425159.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L]
gi|429728453|ref|ZP_19263176.1| dimethyladenosine transferase [Peptostreptococcus anaerobius VPI
4330]
gi|289156282|gb|EFD04939.1| dimethyladenosine transferase [Peptostreptococcus anaerobius 653-L]
gi|429149682|gb|EKX92653.1| dimethyladenosine transferase [Peptostreptococcus anaerobius VPI
4330]
Length = 293
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I D++ + +GD V+E+GPG G+LT L + V+ +E D+ ++
Sbjct: 24 KSLGQNFLIDDNIIDKIVDGSLAGQGDKVIEVGPGIGTLTRELASRSEKVMVVEIDKKLI 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + + D + ++ ED +K I+ + + G K+VAN+P+ I+T +I +
Sbjct: 84 PILGDTLSDFDNVTIVNEDIMKADIKDLI-----DKNLDGGPVKLVANLPYYITTPIIMR 138
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L +++V+++Q+E A R+ P + ++ +++ V FY
Sbjct: 139 FLEEDINVTDIVVMVQKEVAERMNANPGKK--DFGALSVAVQFY 180
>gi|352094199|ref|ZP_08955370.1| Ribosomal RNA small subunit methyltransferase A [Synechococcus sp.
WH 8016]
gi|351680539|gb|EHA63671.1| Ribosomal RNA small subunit methyltransferase A [Synechococcus sp.
WH 8016]
Length = 277
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 15/154 (9%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIE 170
G RK GQH+++N + D++ AA +Q+GD VLE+GPG G+LT LL + A + A+E
Sbjct: 5 GHTARKRFGQHWLINERVLDRIVEAAELQDGDRVLEVGPGRGALTERLLASDAAAIHAVE 64
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D+ +V ++E F + + + D + S L L + ++ KVVANIP+NI+
Sbjct: 65 LDRDLVAGLQETFGGHPKFSLQEGDVL-----SVPLDLSDGEPAN----KVVANIPYNIT 115
Query: 231 TDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
++++L+ P+ + +VLL+Q E A R+
Sbjct: 116 GPLLERLIGRLDRPVEPSYQRLVLLVQHEVAQRI 149
>gi|450109762|ref|ZP_21861669.1| dimethyladenosine transferase [Streptococcus mutans SM6]
gi|449225856|gb|EMC25429.1| dimethyladenosine transferase [Streptococcus mutans SM6]
Length = 291
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +K++ ED +K S + + + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLGDFDNVKIVNEDILK----SDLQTCIKEFANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYY 179
>gi|339480140|ref|ZP_08655799.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc pseudomesenteroides KCTC 3652]
Length = 295
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 92/173 (53%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + + + AA+ + D V+EIGPG G+LT L + V+
Sbjct: 17 LNEYGLRAKKKFGQNFLTDLNVLHGIVAASEITAEDNVIEIGPGIGALTEQLAKSAKKVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ + + + V++ D +K +++ + F + K+VAN+P+
Sbjct: 77 AFEIDPQMVAVLSDTLSPYQNIHVIENDILKVNLKQVITEEF----GENANVKIVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ QLL + +V+++Q E A RL + T EY + + + +++
Sbjct: 133 YITTPILMQLLRADIAWDNIVVMMQREVADRL-NAQVGTKEYGVLTLTIQYFA 184
>gi|33862894|ref|NP_894454.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
9313]
gi|62900570|sp|Q7V7W0.1|RSMA_PROMM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|33634810|emb|CAE20796.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
marinus str. MIT 9313]
Length = 280
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 94/155 (60%), Gaps = 17/155 (10%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIE 170
G RK QH+++++ + Q+ AA VQ D +LE+GPG G+LT LL + A+ V A+E
Sbjct: 5 GHHARKRFAQHWLIDAAVLTQILDAADVQPDDRLLEVGPGRGALTERLLASSASAVHAVE 64
Query: 171 KDQHMVGLVRERFASIDQLKV-LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
D+ +V +++RFA DQ + LQE + S L+L + R ++ KVVANIP+NI
Sbjct: 65 LDRDLVSGLKQRFA--DQARFSLQEG----DVLSVPLTLADGRAAT----KVVANIPYNI 114
Query: 230 STDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
+ ++++LL P+ + +VLLLQ+E A R+
Sbjct: 115 TGPLLERLLGRLDRPVDHPYQRLVLLLQKEVAQRI 149
>gi|257066995|ref|YP_003153251.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548]
gi|256798875|gb|ACV29530.1| dimethyladenosine transferase [Anaerococcus prevotii DSM 20548]
Length = 280
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ +++ AA V + VLEIGPG G++T + V+AIE D ++
Sbjct: 23 KSLGQNFLIDKNFVEKIVDAADVDSSN-VLEIGPGIGTITYEMAKTAKKVVAIEIDSSLI 81
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D K++ ED +K + + E + F KVV+N+P+ I+T +I++
Sbjct: 82 PIIGENMEEFDNFKLIHEDILKADLG----RIIEEEFAGEDF-KVVSNLPYYITTPIIEK 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG 281
L+ ++ +++Q+E A R++ ++ +Y +++F+ +YS
Sbjct: 137 LIETDLPCRDMTIMVQKEVADRMLADE-KSKDYSSLSVFIKYYSD 180
>gi|260102234|ref|ZP_05752471.1| dimethyladenosine transferase [Lactobacillus helveticus DSM 20075]
gi|260083975|gb|EEW68095.1| dimethyladenosine transferase [Lactobacillus helveticus DSM 20075]
Length = 291
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 90/168 (53%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA + GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ D+ K++ +D +K + + + F+ K KVVAN+P+
Sbjct: 85 PEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L F+ + L++Q+E A RL E + EY P+ I V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGSKEYGPLTISV 187
>gi|116074644|ref|ZP_01471905.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
sp. RS9916]
gi|116067866|gb|EAU73619.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
sp. RS9916]
Length = 298
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 90/160 (56%), Gaps = 17/160 (10%)
Query: 107 ALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GAT 165
A++ G RK GQH++ + + D + A+ +Q D VLE+GPG G+LT LL + A
Sbjct: 21 AMSFSGHTARKRFGQHWLRDERVLDHILEASGLQADDRVLEVGPGRGALTERLLRSPAAA 80
Query: 166 VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVAN 224
V A+E D+ +V +R+RF S + + + D + L+L G A KVVAN
Sbjct: 81 VHAVELDRDLVAGLRDRFGSDGRFSLREGDVLDVP-----LTL-----PDEGLATKVVAN 130
Query: 225 IPFNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
IP+NI+ ++++L+ P+ + +VLL+Q+E A R+
Sbjct: 131 IPYNITGPLMERLIGRLDRPVDPPYQRLVLLVQKEVAERI 170
>gi|450133673|ref|ZP_21870726.1| dimethyladenosine transferase [Streptococcus mutans NLML8]
gi|449150688|gb|EMB54445.1| dimethyladenosine transferase [Streptococcus mutans NLML8]
Length = 291
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|169335103|ref|ZP_02862296.1| hypothetical protein ANASTE_01510 [Anaerofustis stercorihominis DSM
17244]
gi|169257841|gb|EDS71807.1| dimethyladenosine transferase [Anaerofustis stercorihominis DSM
17244]
Length = 287
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 100/179 (55%), Gaps = 8/179 (4%)
Query: 104 TIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
TI + +K F +K LGQ+++ + I ++ + + + ++VLE+GPG GSLT L
Sbjct: 8 TISEITNKYDFRFKKDLGQNFLTDENIVLKIVDSLELTDDEVVLEVGPGMGSLTQKLAER 67
Query: 163 GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSSGFAKV 221
V A+E D V ++ E + + ++++ +D +K +R + ++ E RK K
Sbjct: 68 AYKVYAVEIDTRAVNMLEETLSEYNNIEIINKDILKTDLREILEDAIKENRK-----IKF 122
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
++N+P+ I++ ++ ++L +F +V++LQ+E A RL + T +Y I V++Y+
Sbjct: 123 ISNLPYYITSPILMKVLEDKVMFENIVVMLQKEVATRL-NAKVNTKDYSSFTIAVDYYA 180
>gi|450045200|ref|ZP_21838322.1| dimethyladenosine transferase [Streptococcus mutans N34]
gi|449200680|gb|EMC01702.1| dimethyladenosine transferase [Streptococcus mutans N34]
Length = 291
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|227501188|ref|ZP_03931237.1| dimethyladenosine transferase [Anaerococcus tetradius ATCC 35098]
gi|227216589|gb|EEI81993.1| dimethyladenosine transferase [Anaerococcus tetradius ATCC 35098]
Length = 280
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 98/164 (59%), Gaps = 7/164 (4%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ +++ A V++ + VLEIGPG G++T + + V+AIE D ++
Sbjct: 23 KSLGQNFLVDKNFVEKIVDRADVKDTN-VLEIGPGIGTITYEMAKSAKKVVAIEIDSALL 81
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D K++ ED +K ++ + E S F KVV+N+P+ I+T +I++
Sbjct: 82 PIIEENMEEFDNFKLIHEDILKANLE----KIVEEEFSGEAF-KVVSNLPYYITTPIIEK 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L+ +++ +++Q+E A R++ + + EY +++F+ +++
Sbjct: 137 LVTSKLPCTDMTIMVQKEVADRML-ATEKDKEYSSLSVFIKYFT 179
>gi|337751810|ref|YP_004645972.1| protein RsmA [Paenibacillus mucilaginosus KNP414]
gi|379724747|ref|YP_005316878.1| protein RsmA [Paenibacillus mucilaginosus 3016]
gi|336302999|gb|AEI46102.1| RsmA [Paenibacillus mucilaginosus KNP414]
gi|378573419|gb|AFC33729.1| RsmA [Paenibacillus mucilaginosus 3016]
Length = 305
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 5/164 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ + +++ AA + + LEIGPG G+LT L A V A+E DQ +
Sbjct: 33 KKSLGQNFLIDTNVLNKIVGAAELDKTKGALEIGPGIGALTQQLAKAAGRVTAVEIDQRL 92
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L++E A V+ D ++ + LF+ S VVAN+P+ ++T +I
Sbjct: 93 LPLLKETLAPYPHASVIHGDVLQVSLN----DLFKEHFSECSGVSVVANLPYYVTTPIIM 148
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
+LL +V+++Q+E A R+ EY ++I V +Y
Sbjct: 149 KLLEEKLPLENIVVMIQKEVAERMAA-GPGGKEYGSLSIAVQYY 191
>gi|226325806|ref|ZP_03801324.1| hypothetical protein COPCOM_03619 [Coprococcus comes ATCC 27758]
gi|225205930|gb|EEG88284.1| dimethyladenosine transferase [Coprococcus comes ATCC 27758]
Length = 294
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + D++ AA + + D VLEIGPG G++T L A V A+E D+ +
Sbjct: 24 QKKFGQNFLIDEHVLDKIIRAAEITKDDYVLEIGPGIGTMTQYLACAAREVTAVEIDRAL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + ++ ED +K I + + K+ KVVAN+P+ I+T +I
Sbjct: 84 IPILEDTLKEYDNVSIINEDILKVDIAA-----LAKEKNGGRPIKVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 139 GLFESHVPLESITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 182
>gi|313884585|ref|ZP_07818346.1| dimethyladenosine transferase [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620369|gb|EFR31797.1| dimethyladenosine transferase [Eremococcus coleocola
ACS-139-V-Col8]
Length = 296
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 6/145 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++ I D++ AAA + V+EIGPG G+LT L + VLA E D
Sbjct: 25 KKSLGQNFLIEPNILDKMVAAADIDSDTTVIEIGPGIGALTEFLALSAKQVLAFEIDARF 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
V ++ A+ D +KV+ +D +K ++ SL + + VVAN+P+ I+T +I
Sbjct: 85 VSILENTLAAYDNVKVIHQDILKVDFQAPEYASLKDLDR-----LVVVANLPYYITTPII 139
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
L+ F +V+++Q+E A R+
Sbjct: 140 MHLIDSHLPFDRLVMMMQKEVAERM 164
>gi|291526963|emb|CBK92549.1| dimethyladenosine transferase [Eubacterium rectale M104/1]
Length = 288
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 99/177 (55%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ I +++ +A + + D++LEIGPG G++T L +
Sbjct: 10 TIEVLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMTQYLCESA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D +++ ++++ + D +KV+ +D +K I +L E + KVVA
Sbjct: 70 RQVIAVEIDTNLIPILKDTLSEYDNVKVINDDILKVDIN----ALAEEYNNGKPI-KVVA 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ + +Y +++ V +YS
Sbjct: 125 NLPYYITTPIIMGLFESHVPIDSITIMVQKEVADRM-QAGPGKKDYGALSLAVQYYS 180
>gi|449909418|ref|ZP_21794240.1| dimethyladenosine transferase [Streptococcus mutans OMZ175]
gi|449918898|ref|ZP_21797609.1| dimethyladenosine transferase [Streptococcus mutans 1SM1]
gi|449947156|ref|ZP_21807232.1| dimethyladenosine transferase [Streptococcus mutans 11SSST2]
gi|450070613|ref|ZP_21847670.1| dimethyladenosine transferase [Streptococcus mutans M2A]
gi|450087244|ref|ZP_21854142.1| dimethyladenosine transferase [Streptococcus mutans NV1996]
gi|450105720|ref|ZP_21860057.1| dimethyladenosine transferase [Streptococcus mutans SF14]
gi|450144219|ref|ZP_21873907.1| dimethyladenosine transferase [Streptococcus mutans 1ID3]
gi|449150931|gb|EMB54679.1| dimethyladenosine transferase [Streptococcus mutans 1ID3]
gi|449159884|gb|EMB63183.1| dimethyladenosine transferase [Streptococcus mutans 1SM1]
gi|449168958|gb|EMB71751.1| dimethyladenosine transferase [Streptococcus mutans 11SSST2]
gi|449213714|gb|EMC14043.1| dimethyladenosine transferase [Streptococcus mutans M2A]
gi|449218286|gb|EMC18301.1| dimethyladenosine transferase [Streptococcus mutans NV1996]
gi|449224119|gb|EMC23771.1| dimethyladenosine transferase [Streptococcus mutans SF14]
gi|449261359|gb|EMC58836.1| dimethyladenosine transferase [Streptococcus mutans OMZ175]
Length = 291
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|423069548|ref|ZP_17058334.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
intermedius F0395]
gi|355364225|gb|EHG11958.1| ribosomal RNA small subunit methyltransferase A [Streptococcus
intermedius F0395]
Length = 294
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 8 DYSVTRAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKHVNVIEIGPGIGALTEFL 67
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ ++ ++ + + +K++ ED +K +++ + +
Sbjct: 68 AENAAEVMAFEIDERLMPILADTLQEFENVKIINEDILKSDLQARIKEF----SNPELPI 123
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ +P+ ++ Y ++I V +
Sbjct: 124 KVVANLPYYITTPILIHLIESRIPFSEFVVMMQREVADRISAQPNSKS--YGSLSIAVQY 181
Query: 279 Y 279
Y
Sbjct: 182 Y 182
>gi|89101161|ref|ZP_01173994.1| dimethyladenosine transferase [Bacillus sp. NRRL B-14911]
gi|89084129|gb|EAR63297.1| dimethyladenosine transferase [Bacillus sp. NRRL B-14911]
Length = 293
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A ++EG +EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAELREGSGAIEIGPGIGALTEQLAKRSEKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A +V+ +D +K +++ + E R + VVAN+P+ ++T +I
Sbjct: 83 LPILKETLAPYPNAEVIHQDVLKADVKTTI----EERFAPGQDLMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V +LQ+E A R+ +P + +Y ++I V +Y+
Sbjct: 139 KLLEEKLPIRGIVCMLQKEVADRISAKPG--SKDYGSLSIAVQYYT 182
>gi|449935656|ref|ZP_21803511.1| dimethyladenosine transferase [Streptococcus mutans 2ST1]
gi|450078135|ref|ZP_21850840.1| dimethyladenosine transferase [Streptococcus mutans N3209]
gi|450155730|ref|ZP_21878437.1| dimethyladenosine transferase [Streptococcus mutans 21]
gi|449166325|gb|EMB69269.1| dimethyladenosine transferase [Streptococcus mutans 2ST1]
gi|449210357|gb|EMC10821.1| dimethyladenosine transferase [Streptococcus mutans N3209]
gi|449236792|gb|EMC35692.1| dimethyladenosine transferase [Streptococcus mutans 21]
Length = 291
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|15828486|ref|NP_325846.1| dimethyladenosine transferase [Mycoplasma pulmonis UAB CTIP]
gi|27151595|sp|Q98RJ3.1|RSMA_MYCPU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|14089428|emb|CAC13188.1| DIMETHYLADENOSINE TRANSFERASE (S-ADENOSYLMETHIONINE-6-N',
N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE)(16S RRNA
DIMETHYLASE)(HIGH LEVEL KASUGAMYCIN RESISTANCE PROTEIN
KSGA) (KASUGAMYCIN DIMETHYLTRANSFERASE) [Mycoplasma
pulmonis]
Length = 252
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 98/164 (59%), Gaps = 15/164 (9%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ I +++ ++ V+ +I+ EIGPG G+LT +L+ VLA E DQ M
Sbjct: 4 KKRFGQNFLIDQNIINKIVDSSEVENRNII-EIGPGKGALTKILVKKANKVLAYEIDQDM 62
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++ +S ++ +DF+K F++ ++ + +VANIP+ I++D+I
Sbjct: 63 VNILNQQISS-KNFVLINKDFLKEE--------FDKSQNYN----IVANIPYYITSDIIF 109
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
+++ IF + L++Q+E ALR++ SE+ +++ V F+
Sbjct: 110 KIIENHQIFDQATLMVQKEVALRILAKQ-NDSEFSKLSLSVQFF 152
>gi|189500122|ref|YP_001959592.1| dimethyladenosine transferase [Chlorobium phaeobacteroides BS1]
gi|226729769|sp|B3EQT0.1|RSMA_CHLPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|189495563|gb|ACE04111.1| dimethyladenosine transferase [Chlorobium phaeobacteroides BS1]
Length = 262
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 14/146 (9%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQ+++ + I ++ +A +QE D VLEIGPG G+LT +L A+EKD+ +
Sbjct: 14 KKKLGQNFLTDQNICRKIVESAQLQENDHVLEIGPGFGALTTAILEVVPRFTAVEKDRIL 73
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+R + S+ +V++ DF+K + +S G +++ NIP++I+T ++
Sbjct: 74 AEFIRNEYPSV---RVIEMDFLKIDLEEL---------ASEGRLRIMGNIPYSITTPILF 121
Query: 236 QLLP-MGDIFSEVVLLLQEETALRLV 260
+LL +IFSE L++Q E A RLV
Sbjct: 122 KLLDNRRNIFSE-TLMMQHEVARRLV 146
>gi|422850714|ref|ZP_16897384.1| dimethyladenosine transferase [Streptococcus sanguinis SK150]
gi|325695462|gb|EGD37362.1| dimethyladenosine transferase [Streptococcus sanguinis SK150]
Length = 290
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D+ T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DHSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AESATEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESRIPFSEFVVMMQREVADRISAQPN--TKSYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>gi|334338746|ref|YP_004543726.1| dimethyladenosine transferase [Desulfotomaculum ruminis DSM 2154]
gi|334090100|gb|AEG58440.1| dimethyladenosine transferase [Desulfotomaculum ruminis DSM 2154]
Length = 292
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 18/182 (9%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N+ G RK+LGQ++++++ I D++ AA + E D+ EIGPG G LT L + VL
Sbjct: 14 INAHGFKVRKALGQNFLMDANIIDKIVQAANLSEQDLAFEIGPGLGVLTRRLARSAGKVL 73
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER---RKSSSGFA----- 219
A+E D++++ +++E A +V+ D +K F+R K+ F
Sbjct: 74 AVEIDRNLLPILKETLADSAGAEVIHGDALKLD--------FDRLASEKTGGIFGSRARA 125
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
K+VAN+P+ I+T ++ LL G +V+++Q+E A RL P +Y +++ V +
Sbjct: 126 YKLVANLPYYITTPLLIHLLTGGFNLECMVVMMQKEVADRLKAPP-GGKDYGSLSVLVQY 184
Query: 279 YS 280
++
Sbjct: 185 FT 186
>gi|449479728|ref|XP_004155690.1| PREDICTED: probable dimethyladenosine transferase-like [Cucumis
sativus]
Length = 349
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + + ++ D++LEIGPGTG+LT LL G V+A+E D MV
Sbjct: 29 KSKGQHILKNPLLVDSIVQKSGIKSTDVILEIGPGTGNLTKKLLECGKMVIAVELDPRMV 88
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ RF +LKV+Q D +K + F VANIP+ IS+ +
Sbjct: 89 LELQRRFQDTPYSSRLKVIQGDVLKTEL--------------PYFDICVANIPYQISSPL 134
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL F +++ Q E A+RLV
Sbjct: 135 TFKLLNHQPAFRCAIIMFQREFAMRLV 161
>gi|317126783|ref|YP_004093065.1| dimethyladenosine transferase [Bacillus cellulosilyticus DSM 2522]
gi|315471731|gb|ADU28334.1| dimethyladenosine transferase [Bacillus cellulosilyticus DSM 2522]
Length = 292
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 101/174 (58%), Gaps = 7/174 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L+ G +KSLGQ++++++ + ++ AAA V + V+EIGPG G+LT L V+
Sbjct: 16 LDKYGFSFKKSLGQNFLIDTNVLKRIVAAANVSQSTGVIEIGPGIGALTEQLAKEAKRVV 75
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E DQ ++ +++E ++ + K++ +D +K ++ + FE + + VVAN+P+
Sbjct: 76 AFEIDQRLLPILKETLSAYEHTKIIHQDVLKADVQKVIKDEFEENEELA----VVANLPY 131
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
++T ++ +LL +V+++Q+E A R+ +P+ + Y ++I +Y+
Sbjct: 132 YVTTPILMKLLEEKLPVRTIVVMIQKEVAERIAAKPN--SKNYGSLSIAAQYYA 183
>gi|125974582|ref|YP_001038492.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405]
gi|256004056|ref|ZP_05429041.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360]
gi|281419107|ref|ZP_06250124.1| dimethyladenosine transferase [Clostridium thermocellum JW20]
gi|385780020|ref|YP_005689185.1| dimethyladenosine transferase [Clostridium thermocellum DSM 1313]
gi|419721365|ref|ZP_14248529.1| Ribosomal RNA small subunit methyltransferase A [Clostridium
thermocellum AD2]
gi|419726857|ref|ZP_14253877.1| Ribosomal RNA small subunit methyltransferase A [Clostridium
thermocellum YS]
gi|125714807|gb|ABN53299.1| dimethyladenosine transferase [Clostridium thermocellum ATCC 27405]
gi|255991979|gb|EEU02076.1| dimethyladenosine transferase [Clostridium thermocellum DSM 2360]
gi|281407256|gb|EFB37517.1| dimethyladenosine transferase [Clostridium thermocellum JW20]
gi|316941700|gb|ADU75734.1| dimethyladenosine transferase [Clostridium thermocellum DSM 1313]
gi|380769822|gb|EIC03722.1| Ribosomal RNA small subunit methyltransferase A [Clostridium
thermocellum YS]
gi|380782535|gb|EIC12169.1| Ribosomal RNA small subunit methyltransferase A [Clostridium
thermocellum AD2]
Length = 284
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 10/165 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I ++ A + E D+V+EIGPG GS+T L V+A+E D+ ++
Sbjct: 18 KSLGQNFLIDDNIVKRIVDVAEITEKDLVIEIGPGVGSMTVELAKRAGKVVAVEIDKRLI 77
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+ + + ++ +D + +I + SG KVVAN+P+ I+T +I +
Sbjct: 78 PALEDNLGEFSNVDIINKDIMDVNINEF--------RGESGNVKVVANLPYYITTPIIMK 129
Query: 237 LLPM-GDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
LL D +V ++Q+E A R+V S +Y +++ V +Y+
Sbjct: 130 LLEENNDNIDIMVFMVQKEVAQRMV-ASPGKKDYGALSVAVQYYT 173
>gi|449449575|ref|XP_004142540.1| PREDICTED: probable dimethyladenosine transferase-like [Cucumis
sativus]
Length = 349
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + + ++ D++LEIGPGTG+LT LL G V+A+E D MV
Sbjct: 29 KSKGQHILKNPLLVDSIVQKSGIKSTDVILEIGPGTGNLTKKLLECGKMVIAVELDPRMV 88
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ RF +LKV+Q D +K + F VANIP+ IS+ +
Sbjct: 89 LELQRRFQDTPYSSRLKVIQGDVLKTEL--------------PYFDICVANIPYQISSPL 134
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL F +++ Q E A+RLV
Sbjct: 135 TFKLLNHQPAFRCAIIMFQREFAMRLV 161
>gi|182420084|ref|ZP_02951318.1| dimethyladenosine transferase [Clostridium butyricum 5521]
gi|237669472|ref|ZP_04529452.1| dimethyladenosine transferase [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182376121|gb|EDT73708.1| dimethyladenosine transferase [Clostridium butyricum 5521]
gi|237654916|gb|EEP52476.1| dimethyladenosine transferase [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 281
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + A+V + D ++EIGPG G+LT LL V +IE D ++
Sbjct: 21 KSLGQNFLIDDSVLTDIVDGASVDDKDFIIEIGPGVGTLTAKLLMKAKKVTSIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ D +K S + K+VAN+P+ ++T +I +
Sbjct: 81 PILQEELGEHENFDLIHNDALKVDFNSLI--------GDEPSVKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL G F + +++Q+E A R+ EP+ + EY +++ V +Y
Sbjct: 133 LLKDGYNFKSLTIMIQKEVAERINAEPNCK--EYGALSVLVQYY 174
>gi|359397687|ref|ZP_09190713.1| dimethyladenosine transferase [Novosphingobium pentaromativorans
US6-1]
gi|357600878|gb|EHJ62571.1| dimethyladenosine transferase [Novosphingobium pentaromativorans
US6-1]
Length = 280
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 89/168 (52%), Gaps = 15/168 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH-M 175
K+LGQ+++ + ++ D++AA EG VLE+GPG G LT LL AGA V AIE D+ +
Sbjct: 27 KALGQNFLFDEQLLDRIAAIPGALEGHNVLEVGPGPGGLTRALLRAGAQVTAIEMDRRCL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L A D+LKV++ D +K SLF+ G VVAN+P+N+ T +
Sbjct: 87 PALAEVEQAFPDKLKVIEGDAMKIAP----ASLFD------GPYHVVANLPYNVGTALFT 136
Query: 236 QLLPMGDI---FSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L + + + L+ QEE A R+V + TS Y + + + S
Sbjct: 137 GWLSGEEWPPQWQSLTLMFQEEVARRIVAEA-NTSAYGRLAVLAQWRS 183
>gi|422845053|ref|ZP_16891763.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
gi|325684673|gb|EGD26827.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 296
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 14/169 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E DQ +
Sbjct: 25 KKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSL 84
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFV 276
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V
Sbjct: 141 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAV 187
>gi|291526466|emb|CBK92053.1| dimethyladenosine transferase [Eubacterium rectale DSM 17629]
Length = 292
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 99/177 (55%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ I +++ +A + + D++LEIGPG G++T L +
Sbjct: 10 TIEVLQKYNFNFQKKFGQNFLIDTGILEEIIDSAGITKDDMILEIGPGIGTMTQYLCESA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D +++ ++++ + D +KV+ +D +K I +L E + KVVA
Sbjct: 70 RQVIAVEIDTNLIPILKDTLSEYDNVKVINDDILKVDIN----ALAEEYNNGKPI-KVVA 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ + +Y +++ V +YS
Sbjct: 125 NLPYYITTPIIMGLFESHVPIDSITIMVQKEVADRM-QAGPGKKDYGALSLAVQYYS 180
>gi|450062282|ref|ZP_21844224.1| dimethyladenosine transferase [Streptococcus mutans NLML5]
gi|449206025|gb|EMC06744.1| dimethyladenosine transferase [Streptococcus mutans NLML5]
Length = 291
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|15896238|ref|NP_349587.1| dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824]
gi|337738193|ref|YP_004637640.1| dimethyladenosine transferase [Clostridium acetobutylicum DSM 1731]
gi|27151592|sp|Q97EX0.1|RSMA_CLOAB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|15026041|gb|AAK80927.1|AE007795_6 Dimethyladenosine transferase [Clostridium acetobutylicum ATCC 824]
gi|336292364|gb|AEI33498.1| dimethyladenosine transferase [Clostridium acetobutylicum DSM 1731]
Length = 276
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++ ++ + D + A +Q+ D ++EIGPG G+LT LL V AIE D+ ++
Sbjct: 19 KRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRLLEKAKKVCAIELDESLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ D ++ D +K + + K+VAN+P+ ++T +I +
Sbjct: 79 PIITNEMKEYDNFTLIHNDALKVDFNNII--------GEEQSVKLVANLPYYVTTPIISK 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL G F + +++Q+E R+ +PS T +Y + + V +Y
Sbjct: 131 LLNEGYNFKSLTIMIQKEVGDRIAAKPS--TKDYGALTLLVQYY 172
>gi|238917939|ref|YP_002931456.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750]
gi|238873299|gb|ACR73009.1| dimethyladenosine transferase [Eubacterium eligens ATCC 27750]
Length = 293
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 95/178 (53%), Gaps = 7/178 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI LN G +K GQ+++++ + +++ A V + D V+E+GPG G++T +L
Sbjct: 18 TIAVLNRYGFDFKKKFGQNFLIDENVVEKIVREAGVTKDDFVVEVGPGIGTMTQILCENA 77
Query: 164 ATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
V+A+E D+ ++ ++ E S D + V+ ED +K I+ K+ KVV
Sbjct: 78 REVVAVEIDKKLIPILTEDTLSYYDNVTVINEDILKLDIKK-----LADEKNEGRPIKVV 132
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
AN+P+ I+T +I L + +++Q+E A R+ + T +Y +++ V FY+
Sbjct: 133 ANLPYYITTPIIMGLFESHVPLDSITIMVQKEVADRM-QCGPGTKDYGALSLAVQFYA 189
>gi|386038716|ref|YP_005957670.1| dimethyladenosine transferase [Paenibacillus polymyxa M1]
gi|343094754|emb|CCC82963.1| dimethyladenosine transferase [Paenibacillus polymyxa M1]
Length = 332
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + + LEIGPG G+LT L + V A+E DQ +
Sbjct: 63 KKSLGQNFLIDQNILSKIVNAAGLDDTKGALEIGPGIGALTEKLAQSAKAVTAVEIDQRL 122
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A + +KV D +K +R + F S VVAN+P+ ++T ++
Sbjct: 123 LPILEEVLAPYEHVKVRHGDVLKLDLREVFAADFADVSKVS----VVANLPYYVTTPILM 178
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+LL +V+++Q+E A R+ S T +Y ++I V +YS
Sbjct: 179 RLLEDKLPLENIVVMIQKEVAERMAA-SPGTKDYGSLSIAVQYYS 222
>gi|450000779|ref|ZP_21825358.1| dimethyladenosine transferase [Streptococcus mutans N29]
gi|450007025|ref|ZP_21827560.1| dimethyladenosine transferase [Streptococcus mutans NMT4863]
gi|449185321|gb|EMB87209.1| dimethyladenosine transferase [Streptococcus mutans N29]
gi|449186970|gb|EMB88774.1| dimethyladenosine transferase [Streptococcus mutans NMT4863]
Length = 291
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +K++ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLGDFDNVKIVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGALSIAVQYY 179
>gi|385815093|ref|YP_005851484.1| Dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|325125130|gb|ADY84460.1| Dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 296
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 14/169 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E DQ +
Sbjct: 25 KKNLGQNFLVDLDAVRGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVTAYEVDQSL 84
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFV 276
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V
Sbjct: 141 ITTPIIFNLLEYSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAV 187
>gi|22298201|ref|NP_681448.1| dimethyladenosine transferase [Thermosynechococcus elongatus BP-1]
gi|27151563|sp|P59157.1|RSMA_THEEB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|22294380|dbj|BAC08210.1| dimethyladenosine transferase [Thermosynechococcus elongatus BP-1]
Length = 265
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 96/170 (56%), Gaps = 19/170 (11%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + I Q+ AAA + GD VLEIGPG G+LT LL +GA V+A+E D+ +
Sbjct: 5 RKRFGQHWLRSEAILAQIIAAAELHPGDRVLEIGPGRGALTRPLLVSGAEVVAVELDRDL 64
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
G +R +F S ++ ++++ D ++ + + G KVVANIP+NI+ ++
Sbjct: 65 CGQLRRQFDS-ERFQLIEGDILRLDL------------APLGCNKVVANIPYNITGPLLG 111
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
LL P F ++LL+Q+E RL+ S + Y +++ V F +
Sbjct: 112 HLLGSIARPRRPAFERLILLVQKEIGDRLMA-SPGSKAYGALSVRVQFLA 160
>gi|310639501|ref|YP_003944259.1| ribosomal RNA small subunit methyltransferase a [Paenibacillus
polymyxa SC2]
gi|309244451|gb|ADO54018.1| Ribosomal RNA small subunit methyltransferase A [Paenibacillus
polymyxa SC2]
Length = 294
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + + LEIGPG G+LT L + V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILSKIVNAAGLDDTKGALEIGPGIGALTEKLAQSAKAVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A + +KV D +K +R + F S VVAN+P+ ++T ++
Sbjct: 85 LPILEEVLAPYEHVKVRHGDVLKLDLREVFAADFADVSKVS----VVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+LL +V+++Q+E A R+ S T +Y ++I V +YS
Sbjct: 141 RLLEDKLPLENIVVMIQKEVAERMAA-SPGTKDYGSLSIAVQYYS 184
>gi|78779250|ref|YP_397362.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
9312]
gi|119365046|sp|Q31B19.1|RSMA_PROM9 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|78712749|gb|ABB49926.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
9312]
Length = 276
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 30/166 (18%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+NSK +K GQH+++N +I +++ A + E D +LEIGPG G+LT+ LL++ L
Sbjct: 1 MNSKNYHQKKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTSKLLDSEIKKL 60
Query: 168 -AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
AIE D+ ++ L+ ++F + D+ + Q D + ++ S + KV+ANIP
Sbjct: 61 HAIELDKDLINLLNDKFNNNDKFSLQQGDILSVNLDS----------INKKITKVIANIP 110
Query: 227 FNISTDVIKQLLPMGDIF------------SEVVLLLQEETALRLV 260
+NI+ P+ DIF +++ L+Q++ R++
Sbjct: 111 YNITG-------PILDIFIGRLGIIRNYNYEKIIFLMQKDVVDRIL 149
>gi|449893205|ref|ZP_21788604.1| dimethyladenosine transferase [Streptococcus mutans SF12]
gi|449255991|gb|EMC53827.1| dimethyladenosine transferase [Streptococcus mutans SF12]
Length = 291
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV ED +K S + + + + KVVAN+P+ I+T ++
Sbjct: 81 VSILADTLRDFDNIKVFNEDILK----SDLQTCIKEFANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|291520367|emb|CBK75588.1| dimethyladenosine transferase [Butyrivibrio fibrisolvens 16/4]
Length = 284
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T L + G +K GQ+++++ + D + AA + + D VLEIGPG G++T L
Sbjct: 10 TKAVLEAHGFSFQKKYGQNFLIDGNVLDNIIDAAGITKDDFVLEIGPGIGTMTQRLCEEA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D+ ++ ++ + ++ V+ +D +K I++ K+ KVVA
Sbjct: 70 REVVAVEIDKTLIPILDDTLSTYKNWTVINQDILKVDIKA-----LADEKNGGKPIKVVA 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ E + EY +++ V +YS
Sbjct: 125 NLPYYITTPIIMGLFESHVPLESITIMVQKEVADRMQE-GPGSKEYGALSLAVQYYS 180
>gi|160894460|ref|ZP_02075236.1| hypothetical protein CLOL250_02012 [Clostridium sp. L2-50]
gi|156863771|gb|EDO57202.1| dimethyladenosine transferase [Clostridium sp. L2-50]
Length = 287
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + ++ AA + + D+VLEIGPG G++T L + V+A+E D+++
Sbjct: 22 QKKFGQNFLIDDHVITKIINAAEITKDDLVLEIGPGIGTMTQYLAESAGKVIAVEIDKNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + ++ ED +K I L E KVVAN+P+ I+T +I
Sbjct: 82 IPILGETLAEYDNVTIINEDILKLDIN----RLVEEENDGKPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P + +Y +++ V +Y+
Sbjct: 137 GLFESHVPLQSITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYA 180
>gi|221234694|ref|YP_002517130.1| dimethyladenosine transferase [Caulobacter crescentus NA1000]
gi|220963866|gb|ACL95222.1| dimethyladenosine transferase [Caulobacter crescentus NA1000]
Length = 281
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 13/157 (8%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
+AL RKS GQH++L+ + ++A A V EGD V+E+GPG G LT LL GA
Sbjct: 16 EALERHDLMARKSFGQHFLLDLNVTRKIARLAQVGEGDTVVEVGPGPGGLTRALLETGAR 75
Query: 166 VLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+AIEKD + L+ E A + + L++++ D +K + +++ G A VV+
Sbjct: 76 VVAIEKDSRFLPLLAE-VAEVAEGRLELVEGDALKV----------DAAQAAGGPAHVVS 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
N+P+N+ T ++ L + L+ Q+E A R+V
Sbjct: 125 NLPYNVGTQLLINWLTGPFRPLSMTLMFQKEVADRIV 161
>gi|418029917|ref|ZP_12668434.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|354688380|gb|EHE88419.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
Length = 275
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 14/169 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E DQ +
Sbjct: 4 KKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSL 63
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 64 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 119
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFV 276
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V
Sbjct: 120 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAV 166
>gi|402830908|ref|ZP_10879602.1| dimethyladenosine transferase [Capnocytophaga sp. CM59]
gi|402283342|gb|EJU31860.1| dimethyladenosine transferase [Capnocytophaga sp. CM59]
Length = 263
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 10/147 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K LGQH++ + I Q+A ++ VLEIGPGTG LT LL A V IE D+
Sbjct: 9 PKKHLGQHFLTDLNIAQQIAQTLSLCGYKQVLEIGPGTGVLTQFLLEKDAEVFVIEIDKE 68
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
V ++ F + +L EDF+K I S+ + + FA ++ N P+NIS+ ++
Sbjct: 69 SVAYLKAYFPKLKG-HILCEDFLKFDIVSYF--------NKTPFA-IIGNFPYNISSQIV 118
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVE 261
+LL + E + Q+E A R+ E
Sbjct: 119 FKLLEIRFFVPEFAGMFQKEVAERICE 145
>gi|357455725|ref|XP_003598143.1| Dimethyladenosine transferase [Medicago truncatula]
gi|355487191|gb|AES68394.1| Dimethyladenosine transferase [Medicago truncatula]
Length = 351
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + + ++ D+VLEIGPGTG+LT LL AG V+A+E D MV
Sbjct: 28 KSKGQHILKNPLLVDTIVQKSGIKTTDVVLEIGPGTGNLTKKLLEAGKKVIAVEIDPRMV 87
Query: 177 GLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +RF +L V+Q D +K + F VANIP+ IS+ +
Sbjct: 88 LELNKRFQGTPSSRLTVIQGDVLKTEL--------------PYFDICVANIPYQISSPLT 133
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV 260
+LL F +++ Q E A+RLV
Sbjct: 134 FKLLKHQPAFRCAIIMFQREFAMRLV 159
>gi|254429167|ref|ZP_05042874.1| dimethyladenosine transferase [Alcanivorax sp. DG881]
gi|196195336|gb|EDX90295.1| dimethyladenosine transferase [Alcanivorax sp. DG881]
Length = 270
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 10/164 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + + D++ +Q GD ++EIGPG G+LT LL + +E D+ +
Sbjct: 7 RKRFGQHFLHDRNLVDRMIRTLGLQAGDTLVEIGPGRGALTYPLLEEIPHLHVVELDRDL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L+R+ + D+L + + D ++ R+ K + +V+ N+P+NIST +I
Sbjct: 67 IALLRQE-NTPDRLSIHESDALRFDFRA--------LKPADKPLRVIGNLPYNISTPLIF 117
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
LL D S++ +LQ+E RL S T ++ ++I V ++
Sbjct: 118 HLLAQADAISDMTFMLQKEVVERLTA-SPGTRDWGRLSIMVQYH 160
>gi|104773499|ref|YP_618479.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513494|ref|YP_812400.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|118600873|sp|Q1GBR1.1|RSMA_LACDA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|122275736|sp|Q04C60.1|RSMA_LACDB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|103422580|emb|CAI97183.1| Dimethyladenosine transferase (16S rRNA dimethylase) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|116092809|gb|ABJ57962.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 296
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 14/169 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E DQ +
Sbjct: 25 KKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSL 84
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFV 276
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V
Sbjct: 141 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAV 187
>gi|384459704|ref|YP_005672124.1| dimethyladenosine transferase [Clostridium acetobutylicum EA 2018]
gi|325510393|gb|ADZ22029.1| dimethyladenosine transferase [Clostridium acetobutylicum EA 2018]
Length = 287
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++ ++ + D + A +Q+ D ++EIGPG G+LT LL V AIE D+ ++
Sbjct: 30 KRLGQNFLTDNTVLDDIVENAEIQKDDFIIEIGPGVGTLTRRLLEKAKKVCAIELDESLI 89
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ D ++ D +K + + K+VAN+P+ ++T +I +
Sbjct: 90 PIITNEMKEYDNFTLIHNDALKVDFNNII--------GEEQSVKLVANLPYYVTTPIISK 141
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL G F + +++Q+E R+ +PS T +Y + + V +Y
Sbjct: 142 LLNEGYNFKSLTIMIQKEVGDRIAAKPS--TKDYGALTLLVQYY 183
>gi|197301323|ref|ZP_03166408.1| hypothetical protein RUMLAC_00054 [Ruminococcus lactaris ATCC
29176]
gi|197299641|gb|EDY34156.1| dimethyladenosine transferase [Ruminococcus lactaris ATCC 29176]
Length = 297
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 98/178 (55%), Gaps = 8/178 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ + D++ +A + + D+VLEIGPG G++T L A
Sbjct: 18 TIEVLQKYNFVFQKKFGQNFLIDTHVLDKIIGSAEITKDDVVLEIGPGIGTMTQYLACAA 77
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A+E D+ ++ ++ + + + ++V+ D +K I + ++ KVVA
Sbjct: 78 KKVIAVEIDKALIPILEDTLSEYENVRVINHDVLKVDI-----AKLAEEENGGKPIKVVA 132
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 133 NLPYYITTPIIMGLFENHVPIKSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 188
>gi|450176911|ref|ZP_21886087.1| dimethyladenosine transferase [Streptococcus mutans SM1]
gi|449244380|gb|EMC42757.1| dimethyladenosine transferase [Streptococcus mutans SM1]
Length = 291
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV ED +K S + + + + KVVAN+P+ I+T ++
Sbjct: 81 VSILADTLRDFDNIKVFNEDILK----SDLQTCIKEFANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|449877012|ref|ZP_21783091.1| dimethyladenosine transferase [Streptococcus mutans S1B]
gi|449991610|ref|ZP_21821940.1| dimethyladenosine transferase [Streptococcus mutans NVAB]
gi|449180887|gb|EMB83020.1| dimethyladenosine transferase [Streptococcus mutans NVAB]
gi|449251422|gb|EMC49434.1| dimethyladenosine transferase [Streptococcus mutans S1B]
Length = 291
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV ED +K S + + + + KVVAN+P+ I+T ++
Sbjct: 81 VSILADTLRDFDNIKVFNEDILK----SDLQTCIKEFANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|72382118|ref|YP_291473.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL2A]
gi|119365047|sp|Q46L58.1|RSMA_PROMT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|72001968|gb|AAZ57770.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL2A]
Length = 291
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 89/159 (55%), Gaps = 15/159 (9%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN PRK GQH++ + + DQ+ AA + D VLE+GPG G+LT L+ + A +
Sbjct: 7 LNDFRHIPRKRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQARFI 66
Query: 168 -AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
AIE D+ +V +++RF+ ++ + + D + + + ++ KVVANIP
Sbjct: 67 QAIELDRDLVVGLKKRFSHQNKFSLREGDILSAPLDA---------ENGLTINKVVANIP 117
Query: 227 FNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLV 260
+NI+ ++K+L+ + F +VLL+Q+E A RL+
Sbjct: 118 YNITGPLLKRLIGELRKAPDNCFETLVLLMQKEVAQRLL 156
>gi|399155881|ref|ZP_10755948.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[SAR324 cluster bacterium SCGC AAA001-C10]
Length = 296
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 27/182 (14%)
Query: 101 YHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
Y ++I +L + +K GQ++++++ + + + AA V GD +LEIGPG G LT LL
Sbjct: 25 YQSSINSL----QMTKKKWGQNFLIHNNVAETIVEAADVHNGDSILEIGPGRGMLTRSLL 80
Query: 161 NAGATVLAIEKDQHMVGLVRERFAS------IDQ--LKVLQEDFVKCHIRSHMLSLFERR 212
GA V AIE D + +R++F IDQ +KV ED VK
Sbjct: 81 ERGAQVTAIEVDPALCEKLRKQFEHEAGFTLIDQDIMKVSPEDLVKI------------- 127
Query: 213 KSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPI 272
S AKVVAN+P+NI+T ++ ++L + + + +++Q E A R+ Y P+
Sbjct: 128 --VSAPAKVVANLPYNIATPLLLRMLFVRKAWQSLTIMVQLEVAERICASPDSGKIYGPL 185
Query: 273 NI 274
++
Sbjct: 186 SL 187
>gi|389577031|ref|ZP_10167059.1| dimethyladenosine transferase [Eubacterium cellulosolvens 6]
gi|389312516|gb|EIM57449.1| dimethyladenosine transferase [Eubacterium cellulosolvens 6]
Length = 299
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 97/178 (54%), Gaps = 7/178 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L G +K GQ+++++ + +++ AA + E D V+EIGPG G+LT L
Sbjct: 20 TIEILQKYGFRFQKKFGQNFLIDPHVLEKIVRAADISEDDCVMEIGPGIGTLTQYLARYA 79
Query: 164 ATVLAIEKDQHMVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222
V A+E D++++ ++ E D + V+ ED +K ++ L E KVV
Sbjct: 80 REVFAVEIDKNLIPILTEDTLKDWDNVTVINEDCLKVDMK----QLVEEHNGGKP-VKVV 134
Query: 223 ANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
AN+P+ I+T ++ +LL F + +++Q+E A R+ + + +Y +++ V +Y+
Sbjct: 135 ANLPYYITTPILMELLEKHVPFESITVMVQKEVADRM-QAGPGSKDYGALSLAVQYYT 191
>gi|300812073|ref|ZP_07092521.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496912|gb|EFK31986.1| dimethyladenosine transferase [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 296
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 14/169 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E DQ +
Sbjct: 25 KKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSL 84
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLGKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFV 276
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V
Sbjct: 141 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAV 187
>gi|331092538|ref|ZP_08341360.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330400759|gb|EGG80362.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 292
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 95/166 (57%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ ++A + + D VLEIGPG G++T L +A V+A+E D+ +
Sbjct: 26 QKKFGQNFLIDTHVLDKIISSAEITKDDFVLEIGPGIGTMTQYLASAAREVVAVEIDKAL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ D +K I + + ++ KVVAN+P+ I+T +I
Sbjct: 86 IPILSDTLSGFDNVTIINNDVLKVDIGA-----LAQEHNNGRPIKVVANLPYYITTPIIM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 141 GLFESNVPIESITVMVQKEVAERMQVGPG--TKDYGALSLAVQYYA 184
>gi|408373906|ref|ZP_11171598.1| ribosomal RNA adenine dimethylase [Alcanivorax hongdengensis
A-11-3]
gi|407766194|gb|EKF74639.1| ribosomal RNA adenine dimethylase [Alcanivorax hongdengensis
A-11-3]
Length = 270
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 10/164 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + + D+L +Q GD ++EIGPG G+LT LL + +E D+ +
Sbjct: 7 RKRFGQHFLHDRNLVDRLVRTLGLQPGDTLVEIGPGRGALTYPLLEEMPHLHVVELDRDL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L+R+ S ++L + + D ++ F K + G +VV N+P+NIST +I
Sbjct: 67 IALLRQE-NSPERLTIHESDALRFD--------FTTLKPADGKLRVVGNLPYNISTPLIF 117
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
LL S++ +LQ+E RL S T ++ ++I V ++
Sbjct: 118 HLLAQSTAISDMTFMLQKEVVDRLTA-SPGTRDWGRLSIMVQYH 160
>gi|119953374|ref|YP_945583.1| dimethyladenosine transferase [Borrelia turicatae 91E135]
gi|119862145|gb|AAX17913.1| dimethyladenosine transferase [Borrelia turicatae 91E135]
Length = 278
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 12/154 (7%)
Query: 107 ALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATV 166
AL SK PRK GQ+Y++N I +++ ++E + + EIGPG G++T +LL +
Sbjct: 14 ALASKNIAPRKIWGQNYLINEHIREKIVDTLEIKENENIWEIGPGLGAMTIILLKKTNFL 73
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
E D ++ E+F K+++ DF+K + ++ K+ +N+P
Sbjct: 74 TVFEIDPKYSEILNEQFGQFKNFKLIKGDFLKTY-----------KQERQNINKIFSNLP 122
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
+NI++ VI L+ G I + +V +Q+E A R++
Sbjct: 123 YNIASKVISMLIEDG-ILTHMVFTVQKELADRML 155
>gi|414154356|ref|ZP_11410675.1| Ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411454147|emb|CCO08579.1| Ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 294
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 97/170 (57%), Gaps = 10/170 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK+LGQ+++L++ I +++ AA + D+V EIGPG G+LT L + V+A+E D ++
Sbjct: 22 RKALGQNFLLDANIIEKIVQAAELSREDLVFEIGPGLGTLTRRLARSAGQVIAVELDTNL 81
Query: 176 VGLVRERFASIDQLKV-----LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
+ ++ E A +V LQ DF K + +F + G+ K+VAN+P+ I+
Sbjct: 82 LPILAETLADFPNTRVVHGDALQADFDKLA-GEYAGGIFG--QPGRGY-KLVANLPYYIT 137
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
T ++ LL G +V+++Q+E A RL+ P +Y +++ V +Y+
Sbjct: 138 TPLLMHLLTGGFNLQCLVVMMQKEVADRLLAPP-GGKDYGSLSVAVQYYT 186
>gi|359409977|ref|ZP_09202442.1| Ribosomal RNA small subunit methyltransferase A [Clostridium sp.
DL-VIII]
gi|357168861|gb|EHI97035.1| Ribosomal RNA small subunit methyltransferase A [Clostridium sp.
DL-VIII]
Length = 283
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + + A V + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 21 KSLGQNFLVDDSVLNDIVDGAEVNDEDFVIEIGPGVGTLTAELLKKAKKVTSIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++++ + +++ +D +K F + K+VAN+P+ ++T +I +
Sbjct: 81 PILKQELGEYENFELIHKDALKVD--------FNELIGTEKSVKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL G F + +++Q+E A R+ +P + EY +++ V +Y
Sbjct: 133 LLKEGYNFKSLTIMIQKEVAERINSDPDCK--EYGALSVLVQYY 174
>gi|206891185|ref|YP_002249355.1| dimethyladenosine transferase [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206743123|gb|ACI22180.1| dimethyladenosine transferase [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 263
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 16/166 (9%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+ LGQH++ N+EI +++ + + D V+EIG G G LT +LL V+AIE D +
Sbjct: 9 KPKLGQHFLRNAEILEKIVKVSEINSNDKVVEIGAGMGDLTEILLKNAKEVIAIEIDPVL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+++ERF + L ++ E+ +K G KVVANIP+ I+ +I
Sbjct: 69 YKILKERFYGKENLVLINENALKFPY------------EEIGQFKVVANIPYYITKPIIF 116
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL + ++ S + L +Q+E A RL +PS T Y ++I +Y+
Sbjct: 117 KLLKLKNLIS-MTLTIQKEVAERLAAKPS--TKAYSALSIIAQYYT 159
>gi|317495931|ref|ZP_07954294.1| dimethyladenosine transferase [Gemella morbillorum M424]
gi|316914108|gb|EFV35591.1| dimethyladenosine transferase [Gemella morbillorum M424]
Length = 286
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ++++++ I +++ A + E V+EIGPG GSLT +
Sbjct: 8 TFEILKKHGFTFKKSLGQNFLIDANILNRIIDGAGINETVGVIEIGPGIGSLTEAIAKKA 67
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V++ E D ++ ++ E A + ++++ D +K + ++ + S VVA
Sbjct: 68 KKVISFEIDGRLLPILSETLADYNNVEIINNDILKVDVD----NIIAEKMSDCDKIMVVA 123
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T ++ L+ + V+++Q E A RL + T +Y + I +N+Y+
Sbjct: 124 NLPYYITTPILTHLIENTEKIDGYVVMMQREVANRL-NAKVGTKDYNSLTILLNYYT 179
>gi|418035193|ref|ZP_12673651.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|354690611|gb|EHE90555.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
Length = 275
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 93/169 (55%), Gaps = 14/169 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E DQ +
Sbjct: 4 KKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSL 63
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 64 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 119
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFV 276
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V
Sbjct: 120 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAV 166
>gi|449464528|ref|XP_004149981.1| PREDICTED: probable dimethyladenosine transferase-like [Cucumis
sativus]
Length = 352
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 20/157 (12%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N I D + +A+ D VLEIGPGTG+LT LL A V+A+E D+ MV
Sbjct: 58 KSRGQHILTNQRILDSIVRKSAILPTDTVLEIGPGTGNLTLKLLEASQKVIAVEIDKRMV 117
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ +R D++ V+ +D +KC F VVANIP+ IS+ +
Sbjct: 118 EVLHKRVVEHQLEDRICVICQDALKCEF--------------PHFDLVVANIPYGISSPL 163
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEY 269
+ +L+ F LLLQ+E A RL+ +P SEY
Sbjct: 164 VAKLVYGTIPFRSATLLLQKEFARRLLADPG--DSEY 198
>gi|406920860|gb|EKD58852.1| Dimethyladenosine transferase [uncultured bacterium]
Length = 265
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 87/144 (60%), Gaps = 5/144 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + ++ ++ + + D V+EIGPG G+LT +L V+AIE D +
Sbjct: 6 KKSLGQNFLKDEQVLARIVESGNISSEDTVIEIGPGQGALTELLAERCKKVIAIELDDRL 65
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E F + ++++ +D +K ++ +L E G+ KV+ANIP+ I+ +I+
Sbjct: 66 IPVLQENFQYDEHVEIVHDDILKI----NLPALIESNNLQQGY-KVIANIPYYITAPIIR 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL SE++L++Q+E A R+
Sbjct: 121 LLLETKFPPSEIILMVQKEVAERI 144
>gi|309808503|ref|ZP_07702402.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a]
gi|308168331|gb|EFO70450.1| dimethyladenosine transferase [Lactobacillus iners LactinV 01V1-a]
Length = 295
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I +L+ S++ L++Q+E A R + + ++ Y P+ I V
Sbjct: 141 ITTPIILKLMHSPIKISQLTLMMQKEVAER-ISAAHKSKAYGPLTIAV 187
>gi|225551958|ref|ZP_03772898.1| dimethyladenosine transferase [Borrelia sp. SV1]
gi|225370956|gb|EEH00386.1| dimethyladenosine transferase [Borrelia sp. SV1]
Length = 281
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + ++E + + EIGPG G++T +LL + A E D
Sbjct: 29 PRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGIGAMTEILLKKTNLLTAFEIDLK 88
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF+K + + + K+ +N+P+NI++ VI
Sbjct: 89 YSEILNEKFGKLKNFKLIKGDFLKKY-----------KNENQNIDKIFSNLPYNIASKVI 137
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+V +Q+E A R+
Sbjct: 138 SKLIE-ENFLKEMVFTIQKELADRI 161
>gi|167760646|ref|ZP_02432773.1| hypothetical protein CLOSCI_03028 [Clostridium scindens ATCC 35704]
gi|336422399|ref|ZP_08602547.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 5_1_57FAA]
gi|167661771|gb|EDS05901.1| dimethyladenosine transferase [Clostridium scindens ATCC 35704]
gi|336008778|gb|EGN38786.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 5_1_57FAA]
Length = 291
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 95/165 (57%), Gaps = 6/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ AA + + D+VLEIGPG G++T L A V+A+E D+++
Sbjct: 24 QKKFGQNFLIDTHVLDKIIRAADIGKDDMVLEIGPGIGTMTQYLAEAAGKVIAVEIDKNL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++++ ED +K I+ L E + KVVAN+P+ I+T +I
Sbjct: 84 IPILTDTLSGYENVQIINEDVLKLDIQ----RLVEEENAGRPI-KVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L V +++Q+E A R+ + +Y +++ V +Y+
Sbjct: 139 GLFESHVPLYSVTVMVQKEVADRM-QTGPGNKDYGALSLAVQYYA 182
>gi|229551483|ref|ZP_04440208.1| dimethyladenosine transferase [Lactobacillus rhamnosus LMS2-1]
gi|258540770|ref|YP_003175269.1| dimethyladenosine transferase [Lactobacillus rhamnosus Lc 705]
gi|385836481|ref|YP_005874256.1| dimethyladenosine transferase [Lactobacillus rhamnosus ATCC 8530]
gi|229315166|gb|EEN81139.1| dimethyladenosine transferase [Lactobacillus rhamnosus LMS2-1]
gi|257152446|emb|CAR91418.1| Dimethyladenosine transferase [Lactobacillus rhamnosus Lc 705]
gi|355395973|gb|AER65403.1| dimethyladenosine transferase [Lactobacillus rhamnosus ATCC 8530]
Length = 294
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ + +I ++ AAA V E D V+EIGPG G+LT L + V+
Sbjct: 15 LKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSEQDDVIEIGPGIGALTQFLADQAHQVV 74
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K ++ + + F+ + KVVAN+P+
Sbjct: 75 ALEIDDRLLPILAETLADYPNTTVVNEDVLKTNLTELVATHFDGNHT----LKVVANLPY 130
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
I+T ++ LL + +++Q+E A RL
Sbjct: 131 YITTPILLHLLRAHLPLHSMTVMMQKEVAARL 162
>gi|450119798|ref|ZP_21865284.1| dimethyladenosine transferase [Streptococcus mutans ST6]
gi|449230915|gb|EMC30153.1| dimethyladenosine transferase [Streptococcus mutans ST6]
Length = 291
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K S + + + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILK----SDLQTCIKEFANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|402304221|ref|ZP_10823296.1| dimethyladenosine transferase [Selenomonas sp. FOBRC9]
gi|400375294|gb|EJP28200.1| dimethyladenosine transferase [Selenomonas sp. FOBRC9]
Length = 291
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 9/165 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ + + AA + D VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + V+ D +K +I L L E ++ KVVAN+P+ I+T +I
Sbjct: 87 AVLAETLRGYDNVTVVPGDILKINI-PETLGLKEGQRF-----KVVANLPYYITTPIIMT 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V ++Q+E A+R+ +P + +Y +++ V +++
Sbjct: 141 LLEQRLPIERLVTMVQKEVAMRMTAQPG--SKDYGALSLAVQYFT 183
>gi|199597856|ref|ZP_03211282.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus
rhamnosus HN001]
gi|258509566|ref|YP_003172317.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG]
gi|385829188|ref|YP_005866960.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG]
gi|199591292|gb|EDY99372.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus
rhamnosus HN001]
gi|257149493|emb|CAR88466.1| Dimethyladenosine transferase [Lactobacillus rhamnosus GG]
gi|259650833|dbj|BAI42995.1| dimethyladenosine transferase [Lactobacillus rhamnosus GG]
Length = 294
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ + +I ++ AAA V E D V+EIGPG G+LT L + V+
Sbjct: 15 LKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSEQDDVIEIGPGIGALTQFLADQAHQVV 74
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K ++ + + F+ + KVVAN+P+
Sbjct: 75 ALEIDDRLLPILAETLADYPNTTVVNEDVLKTNLTELVATHFDGNHT----LKVVANLPY 130
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
I+T ++ LL + +++Q+E A RL
Sbjct: 131 YITTPILLHLLRAHLPLHSMTVMMQKEVAARL 162
>gi|16125931|ref|NP_420495.1| dimethyladenosine transferase [Caulobacter crescentus CB15]
gi|27151598|sp|Q9A7N5.1|RSMA_CAUCR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|13423097|gb|AAK23663.1| dimethyladenosine transferase [Caulobacter crescentus CB15]
Length = 258
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 84/147 (57%), Gaps = 13/147 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RKS GQH++L+ + ++A A V EGD V+E+GPG G LT LL GA V+AIEKD
Sbjct: 3 RKSFGQHFLLDLNVTRKIARLAQVGEGDTVVEVGPGPGGLTRALLETGARVVAIEKDSRF 62
Query: 176 VGLVRERFASIDQ--LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ L+ E A + + L++++ D +K + +++ G A VV+N+P+N+ T +
Sbjct: 63 LPLLAE-VAEVAEGRLELVEGDALKV----------DAAQAAGGPAHVVSNLPYNVGTQL 111
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+ L + L+ Q+E A R+V
Sbjct: 112 LINWLTGPFRPLSMTLMFQKEVADRIV 138
>gi|85716334|ref|ZP_01047307.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A]
gi|85696850|gb|EAQ34735.1| dimethyladenosine transferase [Nitrobacter sp. Nb-311A]
Length = 284
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 18/152 (11%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQH 174
RKSLGQ+++L+ + ++A AA +G V+EIGPG G LT LL AGA V+AIE+D+
Sbjct: 22 RKSLGQNFLLDLNLTAKIARAAGQLQGATVIEIGPGPGGLTRALLAAGAKHVIAIERDER 81
Query: 175 MVGLVRE---RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
+G + E R+ D+L ++ D + + + AK+VAN+P+NI+T
Sbjct: 82 ALGPLEEISDRYP--DRLTIVNGDATNFDPQPLL---------GTTRAKIVANLPYNIAT 130
Query: 232 DVIKQLL---PMGDIFSEVVLLLQEETALRLV 260
++ + L P + +VL+ Q E A R+V
Sbjct: 131 ALLIRWLSIEPWPPWYDAMVLMFQREVAERIV 162
>gi|377808877|ref|YP_005004098.1| dimethyladenosine transferase [Pediococcus claussenii ATCC BAA-344]
gi|361055618|gb|AEV94422.1| dimethyladenosine transferase [Pediococcus claussenii ATCC BAA-344]
Length = 297
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 95/172 (55%), Gaps = 7/172 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G +KSLGQ+++ + + +A AA + D V+E+GPG G+LT L VL
Sbjct: 17 LEEYGLSAKKSLGQNFLTDPNVLINIAIAAGIDNEDDVIEVGPGIGALTEQLARRAHQVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E DQ+++ ++ + A + VL +D +K ++ + + F+ + K+VAN+P+
Sbjct: 77 AFEIDQNLLDVLDDTLAEYKNVTVLNQDVLKANLPNEISEYFDGKHH----LKMVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNF 278
I+T ++K + ++V+++Q+E A RL +P T EY +++ V +
Sbjct: 133 YITTPILKMFMASPLPIEKMVVMMQKEVADRLTAKPG--TKEYGSLSVVVQY 182
>gi|451816958|ref|YP_007453159.1| ribosomal RNA small subunit methyltransferase A [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451782937|gb|AGF53905.1| ribosomal RNA small subunit methyltransferase A [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 281
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 91/164 (55%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + + + A V + D ++EIGPG G+LT LL V +IE D ++
Sbjct: 21 KSLGQNFLVDDSVLNDIVSGAEVNDEDFIIEIGPGVGTLTAQLLMKAKKVTSIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++++ ++ +D +K L KS K+VAN+P+ ++T +I +
Sbjct: 81 PILQQELGDHKNFDLVHKDALKVDFN----ELIGDEKS----VKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL G F + +++Q+E A R+ EP+ T EY +++ V +Y
Sbjct: 133 LLKEGYNFKSLTIMIQKEVAERINAEPN--TKEYGSLSVLVQYY 174
>gi|14591574|ref|NP_143656.1| dimethyladenosine transferase [Pyrococcus horikoshii OT3]
gi|3258259|dbj|BAA30942.1| 290aa long hypothetical dimethyladenosine transferase [Pyrococcus
horikoshii OT3]
Length = 290
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 17/153 (11%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L+ G PR S+GQH+++ ++ ++ A V E D++LE+GPG G LT+ L V
Sbjct: 31 LSKYGIRPRDSIGQHFLIIEDVIEKAIETANVNENDVILEVGPGLGFLTDELAKRAKKVY 90
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
IE DQ ++ ++++ + S + +K++Q D V+ F KVV+NIP+
Sbjct: 91 TIEIDQKIIEILKKEY-SWNNVKIIQGDAVRVE--------------WPKFNKVVSNIPY 135
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
IS+ +LL F V++ Q E ALR+V
Sbjct: 136 KISSPFTFKLLKTD--FERAVVMYQLEFALRMV 166
>gi|385811902|ref|YP_005848293.1| dimethyladenosine transferase [Lactobacillus fermentum CECT 5716]
gi|299782801|gb|ADJ40799.1| Dimethyladenosine transferase [Lactobacillus fermentum CECT 5716]
Length = 295
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 97/172 (56%), Gaps = 6/172 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G +K GQ+++ N ++ + AA + + D V+EIGPG G+LT L A V+
Sbjct: 15 MNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKLAQAAGEVV 74
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D+ ++ ++ + A + VL +D +K ++ + + F K + KVVAN+P+
Sbjct: 75 ALEIDESLLPVLDDVLAPYGNVTVLNQDVLKANLADLVQTAF---KDPTKPVKVVANLPY 131
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNF 278
I++ ++ LL ++ V +++Q+E A RLV +P T +Y + + +++
Sbjct: 132 YITSPILFALLASQVEWAAVCVMMQKEVADRLVAKPG--TKDYGALTLAIDY 181
>gi|450139530|ref|ZP_21872565.1| dimethyladenosine transferase [Streptococcus mutans NLML1]
gi|449232846|gb|EMC31940.1| dimethyladenosine transferase [Streptococcus mutans NLML1]
Length = 291
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K S + + + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILK----SDLQTCIKEFANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|255311159|ref|ZP_05353729.1| dimethyladenosine transferase [Chlamydia trachomatis 6276]
gi|255317460|ref|ZP_05358706.1| dimethyladenosine transferase [Chlamydia trachomatis 6276s]
gi|440527947|emb|CCP53431.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis D/SotonD5]
gi|440532412|emb|CCP57922.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis G/SotonG1]
gi|440533305|emb|CCP58815.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis Ia/SotonIa1]
gi|440534199|emb|CCP59709.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis Ia/SotonIa3]
Length = 277
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD G S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDPMFEG-------SLSQLPMDIEITDAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYS 280
+ +F++F++
Sbjct: 166 LTVFLSFFA 174
>gi|387786808|ref|YP_006251904.1| dimethyladenosine transferase [Streptococcus mutans LJ23]
gi|379133209|dbj|BAL69961.1| dimethyladenosine transferase [Streptococcus mutans LJ23]
Length = 291
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTLILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|329920627|ref|ZP_08277314.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G]
gi|328935885|gb|EGG32345.1| dimethyladenosine transferase [Lactobacillus iners SPIN 1401G]
Length = 295
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIVASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I +L+ S++ L++Q+E A R + + ++ Y P+ I V
Sbjct: 141 ITTPIILKLMHSPIKISQLTLMMQKEVAER-ISAAHKSKAYGPLTIAV 187
>gi|313896764|ref|ZP_07830312.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312974681|gb|EFR40148.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 291
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 9/165 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ + + AA + D VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + V+ D +K +I L L E ++ KVVAN+P+ I+T +I
Sbjct: 87 AVLAETLRGYDNVTVVPGDILKINI-PETLGLKEGQRF-----KVVANLPYYITTPIIMT 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V ++Q+E A+R+ +P + +Y +++ V +++
Sbjct: 141 LLEQRLPIERLVTMVQKEVAMRMTAQPG--SKDYGALSLAVQYFT 183
>gi|126657589|ref|ZP_01728744.1| dimethyladenosine transferase [Cyanothece sp. CCY0110]
gi|126621045|gb|EAZ91759.1| dimethyladenosine transferase [Cyanothece sp. CCY0110]
Length = 270
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 9/151 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + +Q+ AA ++ D +LEIGPGTG LT LL +++A+E D
Sbjct: 4 PRKRFAQHWLRSETALEQIIQAANLKNSDRLLEIGPGTGILTRRLLPLVQSLIAVELDWD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + + D +LQ D +K I + E+ KVVANIP+NI++ ++
Sbjct: 64 LCKKLVKSLGNEDNFLLLQGDILKLDIATEA----EQFPKFLPINKVVANIPYNITSPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV 260
++LL P + +VLL+Q+E A R+V
Sbjct: 120 EKLLGNIASPENPPYDLIVLLIQKEVAQRIV 150
>gi|385810925|ref|YP_005847321.1| rRNA methylatin simethyladenosine transferase [Ignavibacterium
album JCM 16511]
gi|383802973|gb|AFH50053.1| rRNA methylatin simethyladenosine transferase [Ignavibacterium
album JCM 16511]
Length = 257
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 94/166 (56%), Gaps = 14/166 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P K GQ+++ ++ I ++ Q+ D ++EIGPG G+LT +L N+GA V AIE D+
Sbjct: 4 PIKRFGQNFLKDNNILRKITEVINPQKNDKIIEIGPGEGALTKLLSNSGADVTAIEIDKR 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ ++E + ++K++ +DF++ + S ++V NIP+NI++ +I
Sbjct: 64 VIEHLKETYP---EVKIINKDFLEIDLTQF----------GSSDLRIVGNIPYNITSSII 110
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+L+ ++ + V ++Q E A R+ T +Y +++ +N++S
Sbjct: 111 FKLIENYNLIRDAVFMVQYEVAKRMTAKK-GTKDYGILSVLLNYFS 155
>gi|320530094|ref|ZP_08031164.1| dimethyladenosine transferase [Selenomonas artemidis F0399]
gi|320137527|gb|EFW29439.1| dimethyladenosine transferase [Selenomonas artemidis F0399]
Length = 291
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 9/165 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ + + AA + D VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDAGVVRGIVEAAQLTPADTVLEIGPGIGTLTQGLAETGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + V+ D +K +I L L E ++ KVVAN+P+ I+T +I
Sbjct: 87 AVLAETLRGYDNVTVVPGDILKINI-PETLGLKEGQRF-----KVVANLPYYITTPIIMT 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V ++Q+E A+R+ +P + +Y +++ V +++
Sbjct: 141 LLEQRLPIERLVTMVQKEVAMRMTAQPG--SKDYGALSLAVQYFT 183
>gi|261403903|ref|YP_003240144.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10]
gi|261280366|gb|ACX62337.1| dimethyladenosine transferase [Paenibacillus sp. Y412MC10]
Length = 294
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 90/165 (54%), Gaps = 5/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + E LEIGPG G+LT L TV A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEKLAQTAGTVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++RE ++V D +K + LF + + VVAN+P+ ++T ++
Sbjct: 85 IPILREVLEPYGNVRVHHGDVLKVDLH----ELFRQDFADVSKVSVVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+LL +V+++Q+E A R+ + + +Y ++I V +YS
Sbjct: 141 KLLEEKLPLENIVVMIQKEVAERMAA-APGSKDYGSLSIAVQYYS 184
>gi|450030397|ref|ZP_21833187.1| dimethyladenosine transferase [Streptococcus mutans G123]
gi|449192840|gb|EMB94243.1| dimethyladenosine transferase [Streptococcus mutans G123]
Length = 291
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K S + + + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILK----SDLQTCIKEFANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|260663712|ref|ZP_05864600.1| dimethyladenosine transferase [Lactobacillus fermentum 28-3-CHN]
gi|260551763|gb|EEX24879.1| dimethyladenosine transferase [Lactobacillus fermentum 28-3-CHN]
Length = 295
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 97/172 (56%), Gaps = 6/172 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G +K GQ+++ N ++ + AA + + D V+EIGPG G+LT L A V+
Sbjct: 15 MNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKLAQAAGEVV 74
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D+ ++ ++ + A + VL +D +K ++ + + F K + KVVAN+P+
Sbjct: 75 ALEIDESLLPVLDDVLAPYGNVTVLNQDVLKANLADLVQTAF---KDPTKPVKVVANLPY 131
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNF 278
I++ ++ LL ++ V +++Q+E A RLV +P T +Y + + +++
Sbjct: 132 YITSPILFALLASQVEWAAVCVMMQKEVADRLVAKPG--TKDYGALTLAIDY 181
>gi|184154665|ref|YP_001843005.1| dimethyladenosine transferase [Lactobacillus fermentum IFO 3956]
gi|227514301|ref|ZP_03944350.1| dimethyladenosine transferase [Lactobacillus fermentum ATCC 14931]
gi|183226009|dbj|BAG26525.1| dimethyladenosine transferase [Lactobacillus fermentum IFO 3956]
gi|227087349|gb|EEI22661.1| dimethyladenosine transferase [Lactobacillus fermentum ATCC 14931]
Length = 295
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 97/172 (56%), Gaps = 6/172 (3%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G +K GQ+++ N ++ + AA + + D V+EIGPG G+LT L A V+
Sbjct: 15 MNQYGIHAKKGFGQNFLTNPDVLSGIVRAAGITKDDNVIEIGPGIGALTEKLAQAAGEVV 74
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D+ ++ ++ + A + VL +D +K ++ + + F K + KVVAN+P+
Sbjct: 75 ALEIDESLLPVLDDVLAPYGNVTVLNQDVLKANLADLVQTAF---KDPTKPVKVVANLPY 131
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNF 278
I++ ++ LL ++ V +++Q+E A RLV +P T +Y + + +++
Sbjct: 132 YITSPILFALLASQVEWAAVCVMMQKEVADRLVAKPG--TKDYGALTLAIDY 181
>gi|357014629|ref|ZP_09079628.1| RsmA [Paenibacillus elgii B69]
Length = 306
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 90/165 (54%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ +AA + LEIGPG G+LT L V+A+E DQ +
Sbjct: 35 KKSLGQNFLIDQNILTKIVSAAELDSDKGALEIGPGIGALTQQLAKTAGRVVAVEIDQRL 94
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E + V+ D +K IR LFE VVAN+P+ ++T ++
Sbjct: 95 LPMLKETLEPYPHVSVVHGDVLKTDIR----ELFEAHFRDVSKVSVVANLPYYVTTPIVM 150
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+LL +V+++Q+E A R+ +P + +Y ++I V +Y
Sbjct: 151 KLLEEKLPLEHIVVMIQKEVADRMAAKPGGK--DYGSLSIAVQYY 193
>gi|452995111|emb|CCQ93252.1| dimethyladenosine 16S ribosomal RNA transferase [Clostridium
ultunense Esp]
Length = 289
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 92/164 (56%), Gaps = 6/164 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I ++ + + D VLEIGPG G+LT L V+A+E D+ ++
Sbjct: 25 KSLGQNFLIDGNIVRKIGQEGNITKEDYVLEIGPGIGTLTEELALNAKKVVAVELDKSLL 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E ++++ D ++ I + K + G KVVAN+P+ ++T +I +
Sbjct: 85 PILDETLRDYPNIEIIHGDILRVDINRLI-----EEKMAGGPIKVVANLPYYVTTPIIAK 139
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L+ +++++Q+E A R+V S + +Y +++FV FY+
Sbjct: 140 LIEEDLNIESIIIMIQKEVAHRIVA-SPGSKQYGSLSVFVKFYT 182
>gi|427701771|ref|YP_007044993.1| dimethyladenosine transferase [Cyanobium gracile PCC 6307]
gi|427344939|gb|AFY27652.1| dimethyladenosine transferase [Cyanobium gracile PCC 6307]
Length = 281
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 19/152 (12%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQH 174
RK GQH++ + ++ D++ AAA ++ D VLE+GPG G+LT LL + A++LA+E D+
Sbjct: 9 RKRFGQHWLTDGQVLDRIVAAADLRSDDHVLEVGPGRGALTERLLASPAASLLAVELDRD 68
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+V +R+RF + +++ D +L L S KVVANIP+NI+ ++
Sbjct: 69 LVAGLRQRFVGDGRFTLIEGD---------VLELALPFPDSPAPTKVVANIPYNITGPLL 119
Query: 235 KQLLPMGDI-------FSEVVLLLQEETALRL 259
+ L +G + F +VLL+Q+E R+
Sbjct: 120 ELL--VGRLGRTAPCRFERLVLLVQQEVGQRI 149
>gi|395241868|ref|ZP_10418868.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
pasteurii CRBIP 24.76]
gi|394480616|emb|CCI85108.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
pasteurii CRBIP 24.76]
Length = 293
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA V+ GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDHAAIMGIVEAAEVKPGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K+L +D ++ R+ + F+ + KVVAN+P+
Sbjct: 85 PEILHNELPQKIGDDELADRFKLLLKDILQADFRNDIGDFFDFDQE----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L FS + L++Q+E A RL E + +Y P+ I V
Sbjct: 141 ITTPIIFSLANSDLNFSSLTLMMQKEVAERL-EAGPNSKDYGPLTIAV 187
>gi|348667578|gb|EGZ07403.1| putative dimethyladenosine transferase [Phytophthora sojae]
Length = 312
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 20/159 (12%)
Query: 107 ALNSKGRF---PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
A N+ GR P +LGQH++ N I Q+ A AA++ D+ LE+GPGTG+LT LL
Sbjct: 18 AQNALGRTLATPNTNLGQHFLKNPMIVTQIVAKAAIRGTDVCLEVGPGTGNLTVKLLEQA 77
Query: 164 ATVLAIEKDQHMVGLVRERF---ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+A+E D MV +++R I+ L+++ D ++ + F
Sbjct: 78 KRVVAVEFDPRMVAELQKRIQHTEHINHLQIIHGDVMRVQL--------------PFFDV 123
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
VAN+P+ IS+ + +LL +F V++ QEE A RL
Sbjct: 124 CVANLPYQISSPFVFKLLAHRPMFRCAVVMFQEEFAKRL 162
>gi|422303319|ref|ZP_16390672.1| Ribosomal RNA small subunit methyltransferase A (fragment)
[Microcystis aeruginosa PCC 9806]
gi|389791706|emb|CCI12483.1| Ribosomal RNA small subunit methyltransferase A (fragment)
[Microcystis aeruginosa PCC 9806]
Length = 133
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 72/124 (58%), Gaps = 11/124 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + I D++ AA +Q D VLEIGPGTG LT LL+ V+A+E D+
Sbjct: 5 PRKRFGQHWLKDESILDRIIGAANLQSEDRVLEIGPGTGILTRRLLDGAQLVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F D ++ DF LSL + + KVVANIP+NI+ ++
Sbjct: 65 LWTILNKKFGQQDNFHLIPGDF---------LSL--KPEQLPPVNKVVANIPYNITGPIL 113
Query: 235 KQLL 238
++LL
Sbjct: 114 EKLL 117
>gi|312874729|ref|ZP_07734748.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b]
gi|311089474|gb|EFQ47899.1| dimethyladenosine transferase [Lactobacillus iners LEAF 2053A-b]
Length = 295
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNRP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I +L+ S++ L++Q+E A R + + ++ Y P+ I V
Sbjct: 141 ITTPIILKLMHSPVKISQLTLMMQKEVAER-ISAAHKSKAYGPLTIAV 187
>gi|160882017|ref|YP_001560985.1| dimethyladenosine transferase [Clostridium phytofermentans ISDg]
gi|189028804|sp|A9KL97.1|RSMA_CLOPH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|160430683|gb|ABX44246.1| dimethyladenosine transferase [Clostridium phytofermentans ISDg]
Length = 290
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 102/182 (56%), Gaps = 7/182 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D TI+ LN +K GQ++++++ + +++ +A + + D+VLEIGPG G++T L
Sbjct: 6 DPKQTIEVLNRYRFIFQKKFGQNFLIDTHVLEKIIRSAEITKDDLVLEIGPGIGTMTQYL 65
Query: 160 LNAGATVLAIEKDQHMVGLV-RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218
V+A+E D++++ ++ ++ +S D + ++ ED +K I + + K+
Sbjct: 66 CENAREVVAVEIDKNLIPILEQDTLSSYDNVTIINEDILKVDINQIV-----KEKNGGKP 120
Query: 219 AKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T +I L + +++Q+E A R+ + + +Y +++ V +
Sbjct: 121 IKVVANLPYYITTPIIMGLFEAHVPIDNITVMVQKEVADRM-QSGPGSKDYGALSLAVQY 179
Query: 279 YS 280
Y+
Sbjct: 180 YA 181
>gi|15835248|ref|NP_297007.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
gi|270285420|ref|ZP_06194814.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
gi|270289434|ref|ZP_06195736.1| dimethyladenosine transferase [Chlamydia muridarum Weiss]
gi|301336817|ref|ZP_07225019.1| dimethyladenosine transferase [Chlamydia muridarum MopnTet14]
gi|27151610|sp|Q9PK40.1|RSMA_CHLMU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|7190672|gb|AAF39462.1| dimethyladenosine transferase [Chlamydia muridarum Nigg]
Length = 277
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + +K++N + + K+L Q+++++ I ++ A A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLKSVNGRAK---KALSQNFLVDGNILRKILATADVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VL++ GA V+A+EKD S+ QL + E C + + SL + K
Sbjct: 59 ALSEVLVSQGANVIALEKDPMFE-------ESLSQLPIDIEITDAC--KYPLASLDD--K 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + + V +++Q+E A R+ P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPNRWKTVTVMIQDEVARRITANPG--DKDYSS 165
Query: 272 INIFVNFYS 280
+ +F+ F++
Sbjct: 166 LTVFLRFFA 174
>gi|392409962|ref|YP_006446569.1| dimethyladenosine transferase [Desulfomonile tiedjei DSM 6799]
gi|390623098|gb|AFM24305.1| dimethyladenosine transferase [Desulfomonile tiedjei DSM 6799]
Length = 290
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 8/155 (5%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
K KG P+K +GQ+ +++ ++ AA V G+ ++EIG G G LT LL GA
Sbjct: 9 KTFREKGLTPKKWMGQNLLVDKLYLSKIVQAARVNPGESIVEIGAGLGVLTEALLARGAK 68
Query: 166 VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
V A+E D +++E+F ++++ D +K R SL +R G +VVAN+
Sbjct: 69 VWALEVDSGFYKVLQEKFEGNPDVELIHADALKYDFR----SLAQR----IGVLRVVANL 120
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
P+NIS+ ++ + ++F+ + +LLQ+E A RLV
Sbjct: 121 PYNISSRLLFRFHEHRNLFASLHILLQKEVAERLV 155
>gi|302388630|ref|YP_003824451.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM
16646]
gi|302199258|gb|ADL06828.1| dimethyladenosine transferase [Thermosediminibacter oceani DSM
16646]
Length = 282
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P K LGQH++++ ++ AA + E D VLEIGPG G LT L V+A+EKD +
Sbjct: 14 PSKRLGQHFLIDEAPLYKMLEAARLNESDEVLEIGPGLGVLTLELCRRAKKVVAVEKDPN 73
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ ++ + S + + +L+ED +K + F+ G KVVAN+P+ I++ VI
Sbjct: 74 LIPVLEKLTKSYNNICLLREDVLKLDMEKLWREYFD------GKFKVVANLPYYITSPVI 127
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+++ + V+++Q+E A RLV + +Y +++ V Y+
Sbjct: 128 MKIINNRHLIEMAVIMIQKEVAHRLV-AAPGNKDYGILSVAVQLYA 172
>gi|210617032|ref|ZP_03291367.1| hypothetical protein CLONEX_03589 [Clostridium nexile DSM 1787]
gi|210149555|gb|EEA80564.1| hypothetical protein CLONEX_03589 [Clostridium nexile DSM 1787]
Length = 290
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ ++A + + D VLEIGPG G++T L A V+A+E D+ +
Sbjct: 24 QKKFGQNFLIDTHVLDKIISSAEITKDDFVLEIGPGIGTMTQYLACAARQVVAVEIDKAL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D +K I + + + KVVAN+P+ I+T +I
Sbjct: 84 IPILEDTLQAYDNVTVINDDVLKVDIPK-----LAKEYNDNKPIKVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 139 GLFESHVPIESITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 182
>gi|320103121|ref|YP_004178712.1| dimethyladenosine transferase [Isosphaera pallida ATCC 43644]
gi|319750403|gb|ADV62163.1| dimethyladenosine transferase [Isosphaera pallida ATCC 43644]
Length = 325
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 7/173 (4%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
+G PRK GQ+++++ ++D + AA V D+VLE+GPG G+LT + + GA V+A+E
Sbjct: 16 EGIAPRKRYGQNFLIDLNLHDVIVAAGEVGPNDVVLEVGPGAGALTRRMADLGAAVIAVE 75
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFV--KCHIRSHMLSLFERRKSSSGFA---KVVANI 225
D M L R ++VLQ D + K I +L + A K+VAN+
Sbjct: 76 IDPAMARLTRNAVEGRPNVRVLQRDALANKNRIAPEVLDAVRAGLAVDPVARRFKLVANL 135
Query: 226 PFNISTDVIKQLLPMGDIFSEVV-LLLQEETALRLVEPSLRTSEYRPINIFVN 277
P+N++T ++ LL + E++ + +Q E A R+V + TS Y +++ N
Sbjct: 136 PYNVATPILTNLLVAEEPRVELMAVTIQWEVAERIVA-TPGTSAYGALSVLTN 187
>gi|449898550|ref|ZP_21790666.1| dimethyladenosine transferase [Streptococcus mutans R221]
gi|450115400|ref|ZP_21863909.1| dimethyladenosine transferase [Streptococcus mutans ST1]
gi|449228072|gb|EMC27459.1| dimethyladenosine transferase [Streptococcus mutans ST1]
gi|449259586|gb|EMC57110.1| dimethyladenosine transferase [Streptococcus mutans R221]
Length = 291
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKLFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYY 179
>gi|27151557|sp|O59487.2|RSMA_PYRHO RecName: Full=Probable ribosomal RNA small subunit
methyltransferase A; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName:
Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
dimethyltransferase
Length = 268
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 17/153 (11%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L+ G PR S+GQH+++ ++ ++ A V E D++LE+GPG G LT+ L V
Sbjct: 9 LSKYGIRPRDSIGQHFLIIEDVIEKAIETANVNENDVILEVGPGLGFLTDELAKRAKKVY 68
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
IE DQ ++ ++++ + S + +K++Q D V+ F KVV+NIP+
Sbjct: 69 TIEIDQKIIEILKKEY-SWNNVKIIQGDAVRV--------------EWPKFNKVVSNIPY 113
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
IS+ +LL F V++ Q E ALR+V
Sbjct: 114 KISSPFTFKLLKTD--FERAVVMYQLEFALRMV 144
>gi|24378846|ref|NP_720801.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Streptococcus
mutans UA159]
gi|449984343|ref|ZP_21818997.1| dimethyladenosine transferase [Streptococcus mutans NFSM2]
gi|27151562|sp|P59156.1|RSMA_STRMU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|24376723|gb|AAN58107.1|AE014882_10 dimethyladenosine transferase [Streptococcus mutans UA159]
gi|449180339|gb|EMB82502.1| dimethyladenosine transferase [Streptococcus mutans NFSM2]
Length = 291
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+A E D +
Sbjct: 21 KKLFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K +++ + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILKSDLQTRIKEF----ANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +PS T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPS--TKAYGSLSIAVQYY 179
>gi|301110310|ref|XP_002904235.1| dimethyladenosine transferase [Phytophthora infestans T30-4]
gi|262096361|gb|EEY54413.1| dimethyladenosine transferase [Phytophthora infestans T30-4]
Length = 312
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 17/148 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P +LGQH++ N I Q+ A AA++ D+ LE+GPGTG+LT LL V+A+E D
Sbjct: 29 PNTNLGQHFLKNPMIVTQIVAKAAIRGTDVCLEVGPGTGNLTVKLLEQAKRVVAVEFDPR 88
Query: 175 MVGLVRERF---ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
MV +++R I+ L+++ D ++ + F VAN+P+ IS+
Sbjct: 89 MVAELQKRIQHTEHINHLQIIHGDVMRVQL--------------PFFDVCVANLPYQISS 134
Query: 232 DVIKQLLPMGDIFSEVVLLLQEETALRL 259
+ +LL +F V++ QEE A RL
Sbjct: 135 PFVFKLLAHRPMFRCAVVMFQEEFAKRL 162
>gi|168182310|ref|ZP_02616974.1| dimethyladenosine transferase [Clostridium botulinum Bf]
gi|237793398|ref|YP_002860950.1| dimethyladenosine transferase [Clostridium botulinum Ba4 str. 657]
gi|259494242|sp|C3KXY4.1|RSMA_CLOB6 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|182674690|gb|EDT86651.1| dimethyladenosine transferase [Clostridium botulinum Bf]
gi|229261997|gb|ACQ53030.1| dimethyladenosine transferase [Clostridium botulinum Ba4 str. 657]
Length = 275
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 89/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K F R + K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKID--------FNRLMENKDSIKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY + + V +Y
Sbjct: 128 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYY 169
>gi|194017982|ref|ZP_03056589.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061]
gi|194010319|gb|EDW19894.1| dimethyladenosine transferase [Bacillus pumilus ATCC 7061]
Length = 292
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V + V+EIGPG G+LT L V A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K + + E + VVAN+P+ ++T +I
Sbjct: 83 LPILNDTLSPYDNVTIIHQDVLKADVG----KVIEENFADCKEVMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ PS + EY ++I V +Y+
Sbjct: 139 KLLEENLPLKGIVVMLQKEVADRMAAVPS--SKEYNSLSIAVQYYT 182
>gi|167766021|ref|ZP_02438074.1| hypothetical protein CLOSS21_00513 [Clostridium sp. SS2/1]
gi|429761761|ref|ZP_19294175.1| dimethyladenosine transferase [Anaerostipes hadrus DSM 3319]
gi|167712101|gb|EDS22680.1| dimethyladenosine transferase [Clostridium sp. SS2/1]
gi|429183084|gb|EKY24158.1| dimethyladenosine transferase [Anaerostipes hadrus DSM 3319]
Length = 285
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + +++ +AA V + D VLEIGPG G++T L V+A+E D+++
Sbjct: 21 QKKFGQNFLIDERVLEKIISAAEVNKDDFVLEIGPGIGTMTQYLAENAREVMAVEIDKNL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + ++ D + +L D +K I + K+ KVVAN+P+ I+T +I
Sbjct: 81 IPILSDTLSAYDNVSILNADILKVDIAKIV-----EEKNGGKPVKVVANLPYYITTPIIM 135
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ + T +Y +++ V +Y+
Sbjct: 136 GLFESHVPIDSITVMVQKEVADRM-QSGPGTKDYGALSLAVQYYA 179
>gi|157690824|ref|YP_001485286.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032]
gi|166987691|sp|A8F909.1|RSMA_BACP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|157679582|gb|ABV60726.1| dimethyladenosine transferase [Bacillus pumilus SAFR-032]
Length = 292
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V + V+EIGPG G+LT L V A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K + + E + VVAN+P+ ++T +I
Sbjct: 83 LPILNDTLSPYDNVTIIHQDVLKADVG----KVIEENFADCKEVMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ PS + EY ++I V +Y+
Sbjct: 139 KLLEENLPLKGIVVMLQKEVADRMAAIPS--SKEYNSLSIAVQYYT 182
>gi|387827491|ref|YP_005806773.1| dimethyladenosine transferase [Borrelia burgdorferi N40]
gi|312149423|gb|ADQ29494.1| dimethyladenosine transferase [Borrelia burgdorferi N40]
Length = 281
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + ++E + + EIGPG G++T +LL + A E D
Sbjct: 29 PRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLGAMTEILLKKTNLLTAFEIDLK 88
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF+K + + + K+ +N+P+NI++ VI
Sbjct: 89 YSEILNEKFGKLKNFKLIKGDFLKKY-----------KNENQNIDKIFSNLPYNIASKVI 137
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+V +Q+E A R+
Sbjct: 138 SKLIE-ENFLKEMVFTVQKELADRI 161
>gi|317499422|ref|ZP_07957689.1| dimethyladenosine transferase [Lachnospiraceae bacterium 5_1_63FAA]
gi|316893294|gb|EFV15509.1| dimethyladenosine transferase [Lachnospiraceae bacterium 5_1_63FAA]
Length = 285
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + +++ +AA V + D VLEIGPG G++T L V+A+E D+++
Sbjct: 21 QKKFGQNFLIDERVLEKIISAAEVNKDDFVLEIGPGIGTMTQYLAENAREVMAVEIDKNL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + ++ D + +L D +K I + K+ KVVAN+P+ I+T +I
Sbjct: 81 IPILSDTLSAYDNVSILNADILKVDIAKIV-----EEKNGGKPVKVVANLPYYITTPIIM 135
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ + T +Y +++ V +Y+
Sbjct: 136 GLFESHVPIDSITVMVQKEVADRM-QSGPGTKDYGALSLAVQYYA 179
>gi|123968460|ref|YP_001009318.1| dimethyladenosine transferase [Prochlorococcus marinus str. AS9601]
gi|166221691|sp|A2BR00.1|RSMA_PROMS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|123198570|gb|ABM70211.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
marinus str. AS9601]
Length = 274
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 30/166 (18%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+NSK +K GQH+++N +I +++ A + + D +LEIGPG G+LT+ LL++ L
Sbjct: 1 MNSKNHHQKKRFGQHWLVNKKILEKIKEIAVLNQNDFILEIGPGKGALTSKLLDSEIKKL 60
Query: 168 -AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
AIE D+ ++ L+ ++F + D+ + Q D + ++ S + KV+ANIP
Sbjct: 61 HAIELDKDLINLLNDKFNNNDKFSLQQGDILTVNLDS----------INKKITKVIANIP 110
Query: 227 FNISTDVIKQLLPMGDIF------------SEVVLLLQEETALRLV 260
+NI+ P+ DIF +++ L+Q++ R++
Sbjct: 111 YNITG-------PILDIFIGRLGITRNYNYEKIIFLMQKDVVDRIL 149
>gi|167394422|ref|XP_001733536.1| dimethyladenosine transferase [Entamoeba dispar SAW760]
gi|165894697|gb|EDR22603.1| dimethyladenosine transferase, putative [Entamoeba dispar SAW760]
Length = 252
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N I Q+ AA ++ D+VLEIGPGTG+LT +L ++AIE D M
Sbjct: 14 KSEGQHILKNPMIAQQIVDAAELRRTDVVLEIGPGTGNLTMKMLPFCKKLIAIEIDPRMA 73
Query: 177 GLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+++R + D +L+++Q DF+K + F V+N P++IS+ +
Sbjct: 74 AELKKRVSVTDYVKKLEIIQGDFLKVEL--------------PYFDVCVSNTPYSISSPL 119
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +LL F VL+ Q E A+RLV
Sbjct: 120 VFKLLNHRPQFRSAVLMFQREFAMRLV 146
>gi|375087673|ref|ZP_09734019.1| dimethyladenosine transferase [Dolosigranulum pigrum ATCC 51524]
gi|374563949|gb|EHR35253.1| dimethyladenosine transferase [Dolosigranulum pigrum ATCC 51524]
Length = 296
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 94/166 (56%), Gaps = 9/166 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ AA +V + V+EIGPG G+LT + V A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILEKIVAAGSVDKRTTVIEIGPGIGALTEQIARHAKQVYAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV-ANIPFNISTDVI 234
+ ++ E A ++V +D + + LS FER + VV AN+P+ I+T +I
Sbjct: 83 IPVLEETLADYTNIEVFNQDILDVN-----LSEFERNYLAEAERVVVMANLPYYITTPII 137
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+L G ++V ++Q+E A R+ EP T +Y ++I + ++
Sbjct: 138 MGILESGLEADQLVFMVQKEVAARMSAEPG--TKDYGSLSIALQYF 181
>gi|221218035|ref|ZP_03589501.1| dimethyladenosine transferase [Borrelia burgdorferi 72a]
gi|224533530|ref|ZP_03674119.1| dimethyladenosine transferase [Borrelia burgdorferi CA-11.2a]
gi|225549493|ref|ZP_03770459.1| dimethyladenosine transferase [Borrelia burgdorferi 118a]
gi|226321214|ref|ZP_03796749.1| dimethyladenosine transferase [Borrelia burgdorferi 29805]
gi|221191983|gb|EEE18204.1| dimethyladenosine transferase [Borrelia burgdorferi 72a]
gi|224513203|gb|EEF83565.1| dimethyladenosine transferase [Borrelia burgdorferi CA-11.2a]
gi|225369770|gb|EEG99217.1| dimethyladenosine transferase [Borrelia burgdorferi 118a]
gi|226233382|gb|EEH32128.1| dimethyladenosine transferase [Borrelia burgdorferi 29805]
Length = 281
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + ++E + + EIGPG G++T +LL + A E D
Sbjct: 29 PRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLGAMTEILLKKTNLLTAFEIDLK 88
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF+K + + + K+ +N+P+NI++ VI
Sbjct: 89 YSEILNEKFGKLKNFKLIKGDFLKKY-----------KNENQNIDKIFSNLPYNIASKVI 137
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+V +Q+E A R+
Sbjct: 138 SKLIE-ENFLKEMVFTVQKELADRI 161
>gi|377556435|ref|ZP_09786142.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
gastricus PS3]
gi|376168485|gb|EHS87254.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
gastricus PS3]
Length = 297
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 91/160 (56%), Gaps = 3/160 (1%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
+Y T + L G +K GQ+++ + + + + +A + +GD V+EIGPG G+LT VL
Sbjct: 9 NYRRTREILEKHGIHAKKGFGQNFLTDLNVLNGIVQSAHITQGDNVIEIGPGIGALTEVL 68
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A+E D ++ ++ + A + +KV+ +D +K ++ + + F +
Sbjct: 69 VKAAHQVVALEIDGDLLPVLDDVLAPYNNVKVIHQDILKANLPELIQTEFTNPQQP---I 125
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
KVVAN+P+ I++ ++ LL + + +++Q+E A RL
Sbjct: 126 KVVANLPYYITSPILMNLLASEVNWDTICVMMQKEVAERL 165
>gi|51598843|ref|YP_073031.1| dimethyladenosine transferase [Borrelia garinii PBi]
gi|62900508|sp|Q660T2.1|RSMA_BORGA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|51573414|gb|AAU07439.1| dimethyladenosine transferase [Borrelia garinii PBi]
Length = 281
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 80/145 (55%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + ++E + + EIGPG G++T++LL + A E D
Sbjct: 29 PRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLGAMTDILLKKTNLLTAFEIDLK 88
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF+K + + K+ +N+P+NI++ VI
Sbjct: 89 YSEILNEKFGKLKNFKLIKGDFLKKYPNEN-----------KNIDKIFSNLPYNIASKVI 137
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+VL +Q+E A R+
Sbjct: 138 SKLIE-ENFLKEMVLTVQKELADRI 161
>gi|15594935|ref|NP_212724.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Borrelia
burgdorferi B31]
gi|195941723|ref|ZP_03087105.1| dimethyladenosine transferase [Borrelia burgdorferi 80a]
gi|216264801|ref|ZP_03436793.1| dimethyladenosine transferase [Borrelia burgdorferi 156a]
gi|218249411|ref|YP_002375098.1| dimethyladenosine transferase [Borrelia burgdorferi ZS7]
gi|223888886|ref|ZP_03623477.1| dimethyladenosine transferase [Borrelia burgdorferi 64b]
gi|224532720|ref|ZP_03673337.1| dimethyladenosine transferase [Borrelia burgdorferi WI91-23]
gi|225548676|ref|ZP_03769723.1| dimethyladenosine transferase [Borrelia burgdorferi 94a]
gi|226321896|ref|ZP_03797422.1| dimethyladenosine transferase [Borrelia burgdorferi Bol26]
gi|387826227|ref|YP_005805680.1| dimethyladenosine transferase [Borrelia burgdorferi JD1]
gi|27151556|sp|O51536.1|RSMA_BORBU RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226729758|sp|B7J2F3.1|RSMA_BORBZ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|2688507|gb|AAB91517.1| dimethyladenosine transferase [Borrelia burgdorferi B31]
gi|215981274|gb|EEC22081.1| dimethyladenosine transferase [Borrelia burgdorferi 156a]
gi|218164599|gb|ACK74660.1| dimethyladenosine transferase [Borrelia burgdorferi ZS7]
gi|223885702|gb|EEF56801.1| dimethyladenosine transferase [Borrelia burgdorferi 64b]
gi|224512338|gb|EEF82722.1| dimethyladenosine transferase [Borrelia burgdorferi WI91-23]
gi|225370706|gb|EEH00142.1| dimethyladenosine transferase [Borrelia burgdorferi 94a]
gi|226233085|gb|EEH31838.1| dimethyladenosine transferase [Borrelia burgdorferi Bol26]
gi|312147958|gb|ADQ30617.1| dimethyladenosine transferase [Borrelia burgdorferi JD1]
Length = 281
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + ++E + + EIGPG G++T +LL + A E D
Sbjct: 29 PRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLGAMTEILLKKTNLLTAFEIDLK 88
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF+K + + + K+ +N+P+NI++ VI
Sbjct: 89 YSEILNEKFGKLKNFKLIKGDFLKKY-----------KNENQNIDKIFSNLPYNIASKVI 137
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+V +Q+E A R+
Sbjct: 138 SKLIE-ENFLKEMVFTVQKELADRI 161
>gi|315037470|ref|YP_004031038.1| dimethyladenosine transferase [Lactobacillus amylovorus GRL 1112]
gi|312275603|gb|ADQ58243.1| dimethyladenosine transferase [Lactobacillus amylovorus GRL 1112]
Length = 294
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + +A +Q GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQAAILGIVESAYIQPGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERF------ASIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ A +D+ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILHNELPKKIGDAPLDERFKLILKDVLKANFEEDLAGFFDMSKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L F+ + L++Q+E A RL E EY P+ I V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGNKEYGPLTISV 187
>gi|449864829|ref|ZP_21778644.1| dimethyladenosine transferase [Streptococcus mutans U2B]
gi|449870095|ref|ZP_21780454.1| dimethyladenosine transferase [Streptococcus mutans 8ID3]
gi|449157087|gb|EMB60537.1| dimethyladenosine transferase [Streptococcus mutans 8ID3]
gi|449264633|gb|EMC61970.1| dimethyladenosine transferase [Streptococcus mutans U2B]
Length = 291
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+ E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMTFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED VK S + + + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDIVK----SDLQTCIKEFANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|339006655|ref|ZP_08639230.1| ribosomal RNA methyltransferase [Brevibacillus laterosporus LMG
15441]
gi|338775864|gb|EGP35392.1| ribosomal RNA methyltransferase [Brevibacillus laterosporus LMG
15441]
Length = 295
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AA + + V+EIGPG G+LT L A V+AIE DQ +
Sbjct: 26 KKSLGQNFLTDINILHNIIDAAELSKDKAVIEIGPGIGALTEQLCRAAGKVMAIEIDQRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ D +K + +L S VVAN+P+ ++T ++
Sbjct: 86 LPILEDTLSPYDNITVVHGDVLKLDVA----ALIAEHLSGCSGVSVVANLPYYVTTPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
LL G +V+++Q+E A R+ +P T +Y +++ FY+
Sbjct: 142 GLLESGIELDHIVVMIQKEVAERIAAKPG--TKDYGSLSVAAQFYA 185
>gi|154253780|ref|YP_001414604.1| dimethyladenosine transferase [Parvibaculum lavamentivorans DS-1]
gi|154157730|gb|ABS64947.1| dimethyladenosine transferase [Parvibaculum lavamentivorans DS-1]
Length = 281
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 15/154 (9%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIE 170
G P+KSLGQ+++L+ + ++A AA V +G V+E+GPG G LT LL+ GA V+AIE
Sbjct: 19 GLAPQKSLGQNFLLDLNLTGRIARAAGVLDGYDVVEVGPGPGGLTRALLDNGARRVIAIE 78
Query: 171 KDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
+D+ + + E A+ +L +++ D ++ ++S + S A++VAN+P+N+
Sbjct: 79 RDRRCIAALEEISAAYPGRLVIVEGDALEVDMKSLVTSP----------ARIVANLPYNV 128
Query: 230 STDVIKQLL---PMGDIFSEVVLLLQEETALRLV 260
T ++ L P F + L+ Q E A R+V
Sbjct: 129 GTPLLVGWLQTEPWPAWFDSLTLMFQREVAERIV 162
>gi|67464821|ref|XP_648602.1| dimethyladenosine transferase [Entamoeba histolytica HM-1:IMSS]
gi|56464806|gb|EAL43214.1| dimethyladenosine transferase, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407044216|gb|EKE42449.1| dimethyladenosine transferase [Entamoeba nuttalli P19]
gi|449709002|gb|EMD48354.1| dimethyladenosine transferase, putative [Entamoeba histolytica
KU27]
Length = 295
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N I Q+ AA ++ D+VLEIGPGTG+LT +L ++AIE D M
Sbjct: 14 KSEGQHILKNPMIAQQIVDAAELRRTDVVLEIGPGTGNLTMKMLPFCKKLIAIEIDPRMA 73
Query: 177 GLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+++R + D +L+++Q DF+K + F V+N P++IS+ +
Sbjct: 74 AELKKRVSVTDYVKKLEIIQGDFLKVEL--------------PYFDVCVSNTPYSISSPL 119
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +LL F VL+ Q E A+RLV
Sbjct: 120 VFKLLNHRPQFRSAVLMFQREFAMRLV 146
>gi|443469972|ref|ZP_21060110.1| Dimethyladenosine transferase [Pseudomonas pseudoalcaligenes KF707]
gi|442899491|gb|ELS25939.1| Dimethyladenosine transferase [Pseudomonas pseudoalcaligenes KF707]
Length = 268
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I ++ + +EG+ +LEIGPG G+LT LL +GA + IE D +
Sbjct: 10 RKRFGQNFLHDAGIIHRILRSIHAREGERLLEIGPGQGALTEGLLASGAQLDVIELDLDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ RF + ++ Q D +K F R ++ +VV N+P+NIST +I
Sbjct: 70 IPILTHRFGQLPNFRLNQGDALKFD--------FRRLDAAPHSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL D+ ++ +LQ+E RL EP ++ ++I V ++
Sbjct: 122 HLLAHADLIRDMHFMLQKEVVERLAAEPG--GGDWGRLSIMVQYH 164
>gi|334127324|ref|ZP_08501252.1| dimethyladenosine transferase [Centipeda periodontii DSM 2778]
gi|333389824|gb|EGK60982.1| dimethyladenosine transferase [Centipeda periodontii DSM 2778]
Length = 292
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 9/165 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AA + D VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDRSVVQGIVEAAELTSADTVLEIGPGIGTLTQGLAETGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + ++ D +K +I +L L E + KVVAN+P+ I+T +I
Sbjct: 87 AVLAETLKGYDNVTIVPGDILKLNI-PEILGLREGERF-----KVVANLPYYITTPIIMT 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V ++Q+E A+R+ P + +Y ++I V +++
Sbjct: 141 LLEQRLPIERLVTMVQKEVAVRMTARPG--SKDYGALSIAVQYFT 183
>gi|449957320|ref|ZP_21809567.1| dimethyladenosine transferase [Streptococcus mutans 4VF1]
gi|449170456|gb|EMB73164.1| dimethyladenosine transferase [Streptococcus mutans 4VF1]
Length = 291
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + ++EIGPG G+LT L A V+A E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNIIEIGPGIGALTEFLAENAAEVMAFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K S + + + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILK----SDLQTCIKEFANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|299820686|ref|ZP_07052575.1| dimethyladenosine transferase [Listeria grayi DSM 20601]
gi|299817707|gb|EFI84942.1| dimethyladenosine transferase [Listeria grayi DSM 20601]
Length = 295
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++S I ++A A + +EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDSNILKRIAETAGLNAESNAMEIGPGIGALTEHLARNAKEVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + +K++ +D +K +R+ +L E KVVAN+P+ ++T +I
Sbjct: 83 IPILDDTLSPYPNVKIIHQDVLKADVRA---ALTENFSDPEAPLKVVANLPYYVTTPIIL 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
+LL G + +LQ+E A R + T Y ++I + +Y
Sbjct: 140 KLLHEGIPVDSMTFMLQKEVADR-ISAVPGTKSYGSLSIAIQYY 182
>gi|78212718|ref|YP_381497.1| dimethyladenosine transferase [Synechococcus sp. CC9605]
gi|119365857|sp|Q3AKE0.1|RSMA_SYNSC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|78197177|gb|ABB34942.1| dimethyladenosine transferase [Synechococcus sp. CC9605]
Length = 274
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 15/154 (9%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIE 170
G RK GQH++L+ + ++ AA +Q D VLE+GPG G+LT LL AG V AIE
Sbjct: 5 GHHARKRFGQHWLLDESVLQRIIEAADLQSTDRVLEVGPGRGALTERLLAAGLKAVHAIE 64
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D+ +V +R+RF + Q D ++ L L + R + KVVANIP+NI+
Sbjct: 65 LDRDLVQGLRDRFVVQPGFSLHQGDVLEAP-----LELSDGRIAD----KVVANIPYNIT 115
Query: 231 TDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
++++L+ P+ + +VLL+Q+E A R+
Sbjct: 116 GPLLERLVGRLDRPVDPPYQRLVLLVQKEVAERI 149
>gi|259500886|ref|ZP_05743788.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335]
gi|302190661|ref|ZP_07266915.1| dimethyladenosine transferase [Lactobacillus iners AB-1]
gi|309809117|ref|ZP_07702990.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D]
gi|259167580|gb|EEW52075.1| dimethyladenosine transferase [Lactobacillus iners DSM 13335]
gi|308170562|gb|EFO72582.1| dimethyladenosine transferase [Lactobacillus iners SPIN 2503V10-D]
Length = 295
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V EG V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIIASAGVVEGSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I +L+ S++ L++Q+E A R + + ++ Y P+ I V
Sbjct: 141 ITTPIILKLMHSPIKISQLTLMMQKEVAER-ISAAHKSKAYGPLTIAV 187
>gi|219685175|ref|ZP_03539995.1| dimethyladenosine transferase [Borrelia garinii Far04]
gi|219673271|gb|EED30290.1| dimethyladenosine transferase [Borrelia garinii Far04]
Length = 281
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 80/145 (55%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + ++E + + EIGPG G++T++LL + A E D
Sbjct: 29 PRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLGAMTDILLKKTNFLTAFEIDLK 88
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF+K + + K+ +N+P+NI++ VI
Sbjct: 89 YSEILNEKFGKLKNFKLIKGDFLKKY-----------PNENKNIDKIFSNLPYNIASKVI 137
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+VL +Q+E A R+
Sbjct: 138 SKLIE-ENFLKEMVLTVQKELADRI 161
>gi|451979631|ref|ZP_21928046.1| Ribosomal RNA small subunit methyltransferase A [Nitrospina
gracilis 3/211]
gi|451763159|emb|CCQ89243.1| Ribosomal RNA small subunit methyltransferase A [Nitrospina
gracilis 3/211]
Length = 262
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
++SLGQ+++ + I +++ A A +++G V+EIGPG G LT +LL ++A+E D +
Sbjct: 4 KRSLGQNFLTDPAIAEEIVAHAQIEDGGTVIEIGPGPGILTGLLLERCGKLIALEIDPKL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ +RF S + + Q D +L + G +VV+N+P+ + ++K
Sbjct: 64 CHLLNKRFKSNPKFDLHQRD-----------ALVYDYSQAGGRFQVVSNLPYYAAMPILK 112
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
+L+ G + + L+LQ E RLV +P R +Y + +F F+
Sbjct: 113 RLIHYGSHIANMTLMLQREVVDRLVAQPGSR--DYGSLTVFTQFH 155
>gi|124025654|ref|YP_001014770.1| dimethyladenosine transferase [Prochlorococcus marinus str. NATL1A]
gi|166221688|sp|A2C1Z5.1|RSMA_PROM1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|123960722|gb|ABM75505.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
marinus str. NATL1A]
Length = 291
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 90/161 (55%), Gaps = 19/161 (11%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN PRK GQH++ + + DQ+ AA + D VLE+GPG G+LT L+ + A +
Sbjct: 7 LNDFRHIPRKRFGQHWLKDQGVLDQIVKAAELNPEDCVLEVGPGKGALTEKLIESQAKFI 66
Query: 168 -AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
AIE D+ +V +++RF ++ + + D + + + ++ KVVANIP
Sbjct: 67 QAIELDRDLVIGLKKRFNHQNKFSLREGDILSAPLDA---------ENGVTINKVVANIP 117
Query: 227 FNISTDVIKQLLPMGDI-------FSEVVLLLQEETALRLV 260
+NI+ ++K+L+ G++ F +VLL+Q+E A RL+
Sbjct: 118 YNITGPLLKRLI--GELRKAPENSFETLVLLMQKEVAQRLL 156
>gi|307152257|ref|YP_003887641.1| dimethyladenosine transferase [Cyanothece sp. PCC 7822]
gi|306982485|gb|ADN14366.1| dimethyladenosine transferase [Cyanothece sp. PCC 7822]
Length = 279
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 12/173 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + ++ AA ++ D +LEIGPGTG LT LL +V+A+E D+
Sbjct: 5 PRKRFAQHWLRSEQALSEIIQAAQLKNTDRLLEIGPGTGILTRRLLPEVESVVAVEIDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + +D +LQ D + + + L+ F + + F KVVANIP+NI+ ++
Sbjct: 65 LCKKLVKSLGQLDNFLLLQGDILSLDLTTE-LAPFPK---FTPFNKVVANIPYNITGPIL 120
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSG 281
+ LL P + +VLL+Q+E A RL +P T Y ++I V + +
Sbjct: 121 EYLLGTISEPGHQKYELIVLLMQKEVAERLTAKPG--TKAYSALSIRVQYLAA 171
>gi|224532232|ref|ZP_03672864.1| dimethyladenosine transferase [Borrelia valaisiana VS116]
gi|224511697|gb|EEF82103.1| dimethyladenosine transferase [Borrelia valaisiana VS116]
Length = 284
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + ++E + + EIGPG G++T++LL + A E D
Sbjct: 32 PRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLGAMTDILLKKTNLLTAFEIDLK 91
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF+K + + K+ +N+P+NI++ VI
Sbjct: 92 YSEILNEKFGKLKNFKLIKGDFLKKYTNEN-----------KNIDKIFSNLPYNIASKVI 140
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+V +Q+E A R+
Sbjct: 141 SKLIE-ENFLKEMVFTVQKELADRI 164
>gi|87124270|ref|ZP_01080119.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
sp. RS9917]
gi|86167842|gb|EAQ69100.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Synechococcus
sp. RS9917]
Length = 280
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 87/150 (58%), Gaps = 15/150 (10%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQH 174
RK GQH++ + ++ +++ AA +Q GD VLE+GPG G+LT LL + A+V A+E D+
Sbjct: 9 RKRFGQHWLRDDQVLERILQAADLQAGDRVLEVGPGRGALTERLLASPVASVHAVELDRD 68
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+V +R+RFA+ + + + D + + KVVANIP+NI+ ++
Sbjct: 69 LVVGLRQRFAAEPRFSLQEGDVLAVALEG---------PGGCRATKVVANIPYNITGPLL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++L+ P+ + +VLL+Q+E A R+
Sbjct: 120 ERLVGRLDRPVDPPYQSLVLLVQKEVAERI 149
>gi|262037354|ref|ZP_06010819.1| dimethyladenosine transferase [Leptotrichia goodfellowii F0264]
gi|261748611|gb|EEY35985.1| dimethyladenosine transferase [Leptotrichia goodfellowii F0264]
Length = 278
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 85/144 (59%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + E++D++ A + + V+EIGPG G LT L+ + A E D +
Sbjct: 15 KKKYGQNFLTDGELSDRILEEADIDKNTEVVEIGPGLGFLTEKLIEKSKHLTAFEIDDDL 74
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++F D ++ +DF++ ++ ++ E R++ KVVANIP+ I++ +I
Sbjct: 75 IPVLNKKFKDKDNFLLVHKDFLEINLGEYL----EDREN----IKVVANIPYYITSPIIN 126
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
+L+ D SE+ L++Q+E A R+
Sbjct: 127 RLIEFRDNISEIYLMVQKEVAERI 150
>gi|326531118|dbj|BAK04910.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 351
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 79/154 (51%), Gaps = 19/154 (12%)
Query: 112 GRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAI 169
GRF K GQH + N + D + AA++ GD VLE+GPGTG+LT LL V A+
Sbjct: 33 GRFRLHKPRGQHLLTNPRVLDAIVRHAALRPGDAVLEVGPGTGNLTARLLAFPVNRVTAV 92
Query: 170 EKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
E D MV V RF ++D +L V+Q D ++ F VANIP
Sbjct: 93 ETDPRMVDAVTARFGALDMTRKLTVIQGDAMETEFPE--------------FDVCVANIP 138
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
+ IS+ +I +LL F LLLQ+E A RLV
Sbjct: 139 YGISSPLIAKLLFGAYHFRTATLLLQKEFARRLV 172
>gi|386853993|ref|YP_006203278.1| Dimethyladenosine transferase [Borrelia garinii BgVir]
gi|365194027|gb|AEW68925.1| KsgA [Borrelia garinii BgVir]
Length = 281
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + ++E + + EIGPG G++T++LL + A E D
Sbjct: 29 PRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLGAMTDILLKKTNLLTAFEIDLK 88
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF K + + K+ +N+P+NI++ VI
Sbjct: 89 YSEILNEKFGKLKNFKLIKGDFFKKYPNEN-----------KNIDKIFSNLPYNIASKVI 137
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+VL +Q+E A R+
Sbjct: 138 SKLIE-ENFLKEMVLTVQKELADRI 161
>gi|187777327|ref|ZP_02993800.1| hypothetical protein CLOSPO_00879 [Clostridium sporogenes ATCC
15579]
gi|187774255|gb|EDU38057.1| dimethyladenosine transferase [Clostridium sporogenes ATCC 15579]
Length = 278
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 90/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 19 KNLGQNFLVDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLEKAKEVYSIELDGDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 79 PILKEELKEYNNFTLIHKDALKIDFN----GLMENKDS----IKLVANLPYYVTTPIISR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY + + V +Y
Sbjct: 131 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYY 172
>gi|403514251|ref|YP_006655071.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Lactobacillus
helveticus R0052]
gi|403079689|gb|AFR21267.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus helveticus R0052]
Length = 294
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA + GD V+EIGPG GSLT LL GA V A E D +
Sbjct: 25 KKNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLDGAKVFAYEVDDSL 84
Query: 176 VGLVRERFASI-------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ D+ K++ +D +K + + + F+ K KVVAN+P+
Sbjct: 85 PEILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L F+ + L++Q+E A RL E + EY P+ I V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGSKEYGPLTISV 187
>gi|347543145|ref|YP_004857784.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346986183|dbj|BAK81858.1| dimethyladenosine transferase [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 277
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 96/169 (56%), Gaps = 9/169 (5%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
G + SLGQ++ N + +++ + + D+++EIGPG G+LT L+ V+++E
Sbjct: 12 GFLFKGSLGQNFFNNDNLLNEILDELCITQDDVIIEIGPGFGALTEKLILRAKKVISVEI 71
Query: 172 DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
D ++ ++ ERF D +++ DF+K +++ FE+ S+ KV+ANIP+ I+T
Sbjct: 72 DNRLIPILNERFDKYDNFELIHYDFMKIDLKN-----FEKLNSN---FKVIANIPYYITT 123
Query: 232 DVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
++++L + +++Q+E R++ + T EY + +F N++S
Sbjct: 124 PILEKLFKSDLNIDFIGVMMQKEVGDRIL-ADVSTKEYGSLTVFANYFS 171
>gi|291537682|emb|CBL10794.1| dimethyladenosine transferase [Roseburia intestinalis M50/1]
gi|291537815|emb|CBL10926.1| dimethyladenosine transferase [Roseburia intestinalis XB6B4]
Length = 290
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + +++ AA V + D VLEIGPG G++T L V A+E D ++
Sbjct: 22 QKKFGQNFLIDPHVLEKIVEAAGVTKDDFVLEIGPGIGTMTQYLCENAREVTAVEIDTNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + ++ D + V+ +D +K I + ++ KVVAN+P+ I+T +I
Sbjct: 82 IPILEDTLSAYDNVTVINQDILKLDI-----AKLAMERNGGKPIKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P T +Y +++ V FY+
Sbjct: 137 GLFESHVPIDSITVMVQKEVADRMQVGPG--TKDYGALSLAVQFYA 180
>gi|335040902|ref|ZP_08534022.1| Ribosomal RNA small subunit methyltransferase A [Caldalkalibacillus
thermarum TA2.A1]
gi|334179206|gb|EGL81851.1| Ribosomal RNA small subunit methyltransferase A [Caldalkalibacillus
thermarum TA2.A1]
Length = 290
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 92/165 (55%), Gaps = 5/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++S I AAA+ + V+E+GPG G+LT L V+A E DQ +
Sbjct: 22 KKSLGQNFLVDSNILRAQVEAAALDKTTGVIEVGPGIGALTEQLAIRAGRVVAFEIDQRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + ++ +D +K + ++ + R KVVAN+P+ ++T ++
Sbjct: 82 IPILEESLRPYDNVHIIHQDVLKADL-EQVVKTYLRGLDK---LKVVANLPYYVTTPILL 137
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+ G F +V+++Q+E A RL + + +Y + +FV +Y+
Sbjct: 138 HFIESGLRFEHIVVMVQKEVADRLTATA-GSKDYGSLTVFVQYYT 181
>gi|160903048|ref|YP_001568629.1| dimethyladenosine transferase [Petrotoga mobilis SJ95]
gi|160360692|gb|ABX32306.1| dimethyladenosine transferase [Petrotoga mobilis SJ95]
Length = 275
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 11/164 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQ+++ NS ++ ++ + + E D+++EIG G G LT + V+ E D+ +
Sbjct: 15 KKGLGQNFLSNSTVSHEIVKKSEIDENDVIIEIGTGNGILTEEIAKKAKKVITFEIDERL 74
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ ERF +++ EDF+ LS F+ K +ANIP+ IS+ +++
Sbjct: 75 KPLLEERFEGSKNVEIHFEDFLNTD-----LSKFKDIPK----LKYIANIPYYISSKILE 125
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
++ F + + Q+E RL+ S ++ Y P++IFV Y
Sbjct: 126 KIFEESPKFEYAIFMFQKEFGQRLMAKSKKS--YSPLSIFVQTY 167
>gi|408355407|ref|YP_006843938.1| 16S rRNA methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407726178|dbj|BAM46176.1| 16S rRNA methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 289
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 98/174 (56%), Gaps = 7/174 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +KSLGQ+++++ I + + A V + V+EIGPG G+LT L A V+
Sbjct: 17 LNKFGFSFKKSLGQNFIIDVNILNNILNVAGVTKDVGVIEIGPGMGALTEQLAQAADHVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E DQ + ++ E A D + ++ ED +K +++ + F+ S K+VAN+P+
Sbjct: 77 AFEIDQRLEPILAETLADYDNISIVFEDVLKADVQAVINQHFK----PSQPIKLVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
++T +I QLL + +++Q+E A R+ EP+ ++ Y ++I V +Y+
Sbjct: 133 YVTTPIIMQLLMSRLPLESITVMIQKEVAERMAAEPNSKS--YGSLSIAVQYYT 184
>gi|225374814|ref|ZP_03752035.1| hypothetical protein ROSEINA2194_00434 [Roseburia inulinivorans DSM
16841]
gi|225213383|gb|EEG95737.1| hypothetical protein ROSEINA2194_00434 [Roseburia inulinivorans DSM
16841]
Length = 288
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
TI+ L +K GQ++++++ + +++ + + + D VLEIGPG G++T L
Sbjct: 10 TIEVLQKYNFNFQKKFGQNFLIDTHVLEKIIEESGITKDDFVLEIGPGIGTMTQYLCENA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A+E D++++ ++ + ++ D ++V+ +D +K I K+ KVVA
Sbjct: 70 REVAAVEIDKNLIPILADTLSAYDNVEVINDDILKVDINK-----LAEEKNGGKPIKVVA 124
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T +I L + +++Q+E A R+ V P T EY +++ V +Y+
Sbjct: 125 NLPYYITTPIIMGLFESHVPIDSITIMVQKEVADRMQVGPG--TKEYGALSLAVQYYA 180
>gi|403387590|ref|ZP_10929647.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium sp. JC122]
Length = 283
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++ + + + + + AAV + D ++EIGPG G+LT LL+ V +IE D ++
Sbjct: 19 KSLGQNFLTDDTVLEDIVSGAAVCKDDYIIEIGPGVGTLTVELLDRAKRVTSIELDDRLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E + ++ +D +K + + L KS KVVAN+P+ ++T +I
Sbjct: 79 PILTEELKDYETFNLIHKDALKVNYK----ELIGDEKS----VKVVANLPYYVTTPIIAN 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ +PS T +Y ++ V +Y
Sbjct: 131 LLNGEYNFKSLTIMIQKEVAERIDAQPS--TKDYGAFSLLVQYY 172
>gi|408671201|ref|YP_006871272.1| dimethyladenosine transferase [Borrelia garinii NMJW1]
gi|407241023|gb|AFT83906.1| dimethyladenosine transferase [Borrelia garinii NMJW1]
Length = 274
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + ++E + + EIGPG G++T++LL + A E D
Sbjct: 22 PRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLGAMTDILLKKTNLLTAFEIDLK 81
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF K + + K+ +N+P+NI++ VI
Sbjct: 82 YSEILNEKFGKLKNFKLIKGDFFKKYPNEN-----------KNIDKIFSNLPYNIASKVI 130
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+VL +Q+E A R+
Sbjct: 131 SKLIE-ENFLKEMVLTVQKELAGRI 154
>gi|325955928|ref|YP_004286538.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus acidophilus 30SC]
gi|385816825|ref|YP_005853215.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Lactobacillus
amylovorus GRL1118]
gi|325332493|gb|ADZ06401.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus acidophilus 30SC]
gi|327182763|gb|AEA31210.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus amylovorus GRL1118]
Length = 294
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 90/168 (53%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + +A +Q GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQAAILGIVESADIQPGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERF------ASIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ A +D+ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILHNELPKKIGDAPLDERFKLILKDVLKANFEEDLAVFFDMSKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L F+ + L++Q+E A RL E EY P+ I V
Sbjct: 141 ITTPIIFALAESDLHFASLTLMMQKEVAERL-EAKPGNKEYGPLTISV 187
>gi|240145093|ref|ZP_04743694.1| dimethyladenosine transferase [Roseburia intestinalis L1-82]
gi|257202765|gb|EEV01050.1| dimethyladenosine transferase [Roseburia intestinalis L1-82]
Length = 290
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ + +++ AA V + D VLEIGPG G++T L V A+E D ++
Sbjct: 22 QKKFGQNFLIDPHVLEKIVEAAGVTKDDFVLEIGPGIGTMTQYLCENAREVTAVEIDTNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + ++ D + V+ +D +K I + ++ KVVAN+P+ I+T +I
Sbjct: 82 IPILEDTLSAYDNVTVINQDILKLDI-----AKLAMERNGGKPIKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P T +Y +++ V FY+
Sbjct: 137 GLFESHVPIDSITVMVQKEVADRMQVGPG--TKDYGALSLAVQFYA 180
>gi|354807516|ref|ZP_09040981.1| dimethyladenosine transferase [Lactobacillus curvatus CRL 705]
gi|354513970|gb|EHE85952.1| dimethyladenosine transferase [Lactobacillus curvatus CRL 705]
Length = 297
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 97/178 (54%), Gaps = 7/178 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T K L G +KSLGQ+++ N I Q+ A + + D V+EIGPG GSLT +
Sbjct: 10 TRKILKRYGFKFKKSLGQNFLTNIAILKQIVEAGDITKDDDVIEIGPGIGSLTEQIARKA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
VL+ E D+ ++ ++++ + +L +D ++ +++ + F+ + + K+VA
Sbjct: 70 HQVLSFEIDERLMPVLKDTLNHYHNVTILNQDILEADLKTIIAEQFDGKHN----LKIVA 125
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T ++ LL G +VL++Q+E A R+ EP + Y ++I V +S
Sbjct: 126 NLPYYITTPIMLHLLEAGLPIDRMVLMMQKEVAERINAEPG--SKAYGSLSIAVQLHS 181
>gi|170755195|ref|YP_001779707.1| dimethyladenosine transferase [Clostridium botulinum B1 str. Okra]
gi|259494244|sp|B1ID54.1|RSMA_CLOBK RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|169120407|gb|ACA44243.1| dimethyladenosine transferase [Clostridium botulinum B1 str. Okra]
Length = 275
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 91/164 (55%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K + L E + S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKINFN----ELMENKDS----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY + + V +Y
Sbjct: 128 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYY 169
>gi|429247034|ref|ZP_19210310.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium botulinum CFSAN001628]
gi|428755887|gb|EKX78482.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium botulinum CFSAN001628]
Length = 278
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 91/164 (55%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 19 KNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K + L E + S K+VAN+P+ ++T +I +
Sbjct: 79 PILQEELKEYNNFTLIHKDALKINFN----ELMENKDS----IKLVANLPYYVTTPIISR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY + + V +Y
Sbjct: 131 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYY 172
>gi|399924799|ref|ZP_10782157.1| ribosomal RNA small subunit methyltransferase A [Peptoniphilus
rhinitidis 1-13]
Length = 259
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
+GQ+++++ I ++A AA + E D V+EIGPG G+LT L V+AIE D+ + L
Sbjct: 1 MGQNFLIDGNIVRKIADAAEIDEEDNVIEIGPGVGTLTEELALRAKKVVAIEIDEKLREL 60
Query: 179 VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL 238
+E A ++ +KV+ DF+ ++ L E+ F KVVAN+P+ ++T +I++L+
Sbjct: 61 HKETLA-LENVKVIYGDFLDIDLK----VLTEKEFGDESF-KVVANLPYYVTTPIIEKLV 114
Query: 239 PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+ +++Q+E A RL +Y +++F+N+Y+
Sbjct: 115 LSNTNLISITVMVQKEVAKRL-SAGPGGKDYGSLSVFINYYT 155
>gi|393773415|ref|ZP_10361813.1| dimethyladenosine transferase [Novosphingobium sp. Rr 2-17]
gi|392721295|gb|EIZ78762.1| dimethyladenosine transferase [Novosphingobium sp. Rr 2-17]
Length = 274
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 19/170 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++L+ ++ D++AA EG VLE+GPG G LT LL AGA V AIE D+ +
Sbjct: 20 KALGQNFLLDEQLLDRIAAIPGSLEGQDVLEVGPGPGGLTRALLRAGANVTAIEMDRRCL 79
Query: 177 GLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ E A+ +LKV++ D +K +LF+ G +V+N+P+N+ T +
Sbjct: 80 PALAELEAAFPGKLKVIEGDALKIDPA----TLFD------GPYHIVSNLPYNVGTVLFT 129
Query: 236 QLLPMGDI----FSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
L G+ ++ + L+ QEE A R+V EP TS Y + + + S
Sbjct: 130 GWL-SGETWPPQWASLTLMFQEEVARRIVSEPD--TSAYGRLAVLAQWRS 176
>gi|392963272|ref|ZP_10328698.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans DSM 17108]
gi|421056830|ref|ZP_15519747.1| dimethyladenosine transferase [Pelosinus fermentans B4]
gi|421059750|ref|ZP_15522312.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans B3]
gi|421065070|ref|ZP_15526873.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans A12]
gi|421069349|ref|ZP_15530521.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans A11]
gi|392438010|gb|EIW15872.1| dimethyladenosine transferase [Pelosinus fermentans B4]
gi|392450369|gb|EIW27422.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans A11]
gi|392451096|gb|EIW28090.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans DSM 17108]
gi|392458395|gb|EIW34932.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans B3]
gi|392459757|gb|EIW36136.1| Ribosomal RNA small subunit methyltransferase A [Pelosinus
fermentans A12]
Length = 280
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 92/165 (55%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AA + + D VLEIGPG G+LT L AGA V A+E D+ ++
Sbjct: 25 KKLGQNFLIDEHVVQSIVKAANITQDDAVLEIGPGIGTLTQGLAEAGAAVTAVEIDRRLI 84
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + + ++V+ D ++ I ++ ++ KVVAN+P+ I+T +I
Sbjct: 85 EVLAKTLEGYENIRVVHGDILRIDI---------GKEVAAPRYKVVANLPYYITTPIIMG 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
LL +V ++Q+E A R+V P T +Y +++ V +Y+
Sbjct: 136 LLEAHMPVDILVTMVQKEVAQRMVAVPG--TKDYGSLSVAVQYYT 178
>gi|417301562|ref|ZP_12088713.1| rRNA adenine dimethylase [Rhodopirellula baltica WH47]
gi|327542154|gb|EGF28647.1| rRNA adenine dimethylase [Rhodopirellula baltica WH47]
Length = 326
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 20/197 (10%)
Query: 70 KPTRPAHSSIAGVQKGAASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEI 129
+P RPA S V +G+ + K L + G P GQ+++++ +
Sbjct: 13 RPNRPARPS--NVSRGSRQTATYLS-----------KRLTAAGLRPVSKYGQNFLIDLNL 59
Query: 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQL 189
+ +A +A + DIVLEIG G GSLT+++ + +L +E DQ++ L E A +
Sbjct: 60 VELIARSAEIGPSDIVLEIGTGVGSLTSIMASQAGAILTVEIDQNLFQLASEELAPFPHV 119
Query: 190 KVLQEDFV--KCHIRSHMLSLFERRKS----SSGFAKVVANIPFNISTDVIKQLLPMGDI 243
K++Q D + K R ++ KS S F +VAN+P+N++T ++ LL
Sbjct: 120 KMIQGDALKNKSTFRDDIMESIREAKSRLPDDSKFM-LVANLPYNVATPIVSNLLHQDPP 178
Query: 244 FSEVVLLLQEETALRLV 260
+V+ +Q+E R+V
Sbjct: 179 PDRIVVTIQKELGERMV 195
>gi|225181539|ref|ZP_03734981.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1]
gi|225167787|gb|EEG76596.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1]
Length = 296
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 10/146 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++++ I ++ +AA VQ+ D +LEIGPG GSLT L + VL +E D +
Sbjct: 32 KKKWGQNFLVDENILKKIISAADVQKSDRILEIGPGIGSLTQKLAENASRVLTVEIDTRL 91
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++RE A D ++++ D + G K+VAN+P+N++T ++
Sbjct: 92 IPVLRETLAEYDNVEIIHGD---------AMDFDPAPVCEEGPVKLVANLPYNVATPLLY 142
Query: 236 QLLPMG-DIFSEVVLLLQEETALRLV 260
+ L + FS +V ++Q+E A R+V
Sbjct: 143 RWLKDSRNCFSRLVCMVQKEVAERIV 168
>gi|410726073|ref|ZP_11364333.1| dimethyladenosine transferase [Clostridium sp. Maddingley MBC34-26]
gi|410601505|gb|EKQ56016.1| dimethyladenosine transferase [Clostridium sp. Maddingley MBC34-26]
Length = 283
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + A V D ++EIGPG G+LT LL V +IE D ++
Sbjct: 21 KSLGQNFLVDDSVLRDIVNGADVNNEDFIIEIGPGVGTLTAQLLMKAKKVTSIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + +++ +D +K L KS K+VAN+P+ ++T +I +
Sbjct: 81 PILKEELGENENFQLIHKDALKVDFN----ELIGDEKS----VKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL G F + +++Q+E A R+ EP+ + EY +++ V +Y
Sbjct: 133 LLKEGYNFKSLTIMIQKEVAERINAEPNCK--EYGSLSVLVQYY 174
>gi|302384604|ref|YP_003820426.1| dimethyladenosine transferase [Clostridium saccharolyticum WM1]
gi|302195232|gb|ADL02803.1| dimethyladenosine transferase [Clostridium saccharolyticum WM1]
Length = 289
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ AA V + D VLEIGPG G++T L V+A+E D ++
Sbjct: 22 QKKFGQNFLIDTHVLDKIITAAGVTKDDCVLEIGPGIGTMTQYLAENARHVVAVEIDSNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E + + V+ +D +K I + + KVVAN+P+ I+T +I
Sbjct: 82 IPILKETLTDYENVTVIHDDILKVDINQ-----IAEQYNGGRPIKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P + +Y +++ V +Y+
Sbjct: 137 GLFENNVPIDNITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYA 180
>gi|153940692|ref|YP_001389445.1| dimethyladenosine transferase [Clostridium botulinum F str.
Langeland]
gi|384460533|ref|YP_005673128.1| dimethyladenosine transferase [Clostridium botulinum F str. 230613]
gi|259494245|sp|A7G9I5.1|RSMA_CLOBL RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|152936588|gb|ABS42086.1| dimethyladenosine transferase [Clostridium botulinum F str.
Langeland]
gi|295317550|gb|ADF97927.1| dimethyladenosine transferase [Clostridium botulinum F str. 230613]
Length = 275
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 91/164 (55%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLIDESVLEDIIEGAEISKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E ++S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKIDFN----ELMENKES----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY + + V +Y
Sbjct: 128 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYY 169
>gi|326692423|ref|ZP_08229428.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Leuconostoc argentinum KCTC 3773]
Length = 295
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G +K GQ+++ + + + A + D V+EIGPG G+LT L VL
Sbjct: 17 LTQYGLHAKKKFGQNFLTDLSVLHGIVETAEITADDYVIEIGPGIGALTEQLARRAKRVL 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D MV ++ E D + V+++D +K + + + F KVVAN+P+
Sbjct: 77 AFEIDPQMVAVLAETLQPYDNVTVVEQDILKVDLAQMIATEF----GVGARVKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ QLL + +V+++Q E A RL ++ T Y + + V +++
Sbjct: 133 YITTPILMQLLRSNIAWDNIVVMMQREVADRL-NAAVGTKAYGVLTLTVAYFA 184
>gi|373465297|ref|ZP_09556770.1| dimethyladenosine transferase [Lactobacillus kisonensis F0435]
gi|371760921|gb|EHO49581.1| dimethyladenosine transferase [Lactobacillus kisonensis F0435]
Length = 296
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 84/145 (57%), Gaps = 6/145 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ + + AA + D V+EIGPG G LT L VL E DQ++
Sbjct: 25 KKSLGQNFLVDLNVLSNIVEAAEITGDDDVIEIGPGIGGLTEQLAKVAHRVLGFEIDQNL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E A +K++ +D +K ++ + + + KVVAN+P+ I+T ++
Sbjct: 85 LPVLQETLAPYSNIKIINQDILKANLP----QVVKTELTGKHPLKVVANLPYYITTPIVM 140
Query: 236 QLLPMGDI-FSEVVLLLQEETALRL 259
LL GD+ F +V+++Q+E A RL
Sbjct: 141 NLL-AGDLAFDAIVVMMQKEVAERL 164
>gi|313123062|ref|YP_004033321.1| ribosomal RNA small subunit methyltransferase a [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312279625|gb|ADQ60344.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
Length = 296
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 14/169 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + + AA ++ GD V+E+GPG GSLT LL AG V A E D +
Sbjct: 25 KKNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDHSL 84
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ +DQ K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKP----VKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFV 276
I+T +I LL F+ + L++Q+E A RL +P + Y P++I V
Sbjct: 141 ITTPIIFNLLESSLDFTSLTLMMQKEVAERLAAQPG--SKAYGPLSIAV 187
>gi|241888685|ref|ZP_04775992.1| dimethyladenosine transferase [Gemella haemolysans ATCC 10379]
gi|241864708|gb|EER69083.1| dimethyladenosine transferase [Gemella haemolysans ATCC 10379]
Length = 286
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 92/178 (51%), Gaps = 5/178 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ++++++ I +++ A V V+EIGPG GSLT L
Sbjct: 8 TFEILKKHGFTFKKSLGQNFLIDANILNRIVDGAGVNGNVGVIEIGPGIGSLTEALAKKA 67
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V++ E D ++ ++ E A ++++ D +K + + + S VVA
Sbjct: 68 KKVISFEIDGRLLPILSETLADYPNVEIINNDILKVDVD----KIIAEKMSDCEKIMVVA 123
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG 281
N+P+ I+T ++ L+ + V+++Q+E A RL + T +Y + I +N+Y+
Sbjct: 124 NLPYYITTPILTHLIENTEKIDGYVVMMQKEVANRL-NAKVGTKDYNSLTILLNYYTN 180
>gi|357483617|ref|XP_003612095.1| Dimethyladenosine transferase-like protein [Medicago truncatula]
gi|355513430|gb|AES95053.1| Dimethyladenosine transferase-like protein [Medicago truncatula]
Length = 332
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 77/147 (52%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + D + +A+ D VLEIGPGTG+LT LL A V+AIE DQ MV
Sbjct: 34 KSRGQHILTNPRVLDTIVQKSAINPSDTVLEIGPGTGNLTLKLLEASREVVAIEIDQRMV 93
Query: 177 GLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ R ++L V+ +D ++ F VVANIP+ IS+ +
Sbjct: 94 NILENRALKRGLRNKLTVISKDALRTEF--------------PPFDLVVANIPYGISSPL 139
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
I +L+ F LLLQ+E A RL+
Sbjct: 140 IIKLIYETTPFRSATLLLQKEFARRLL 166
>gi|193212495|ref|YP_001998448.1| dimethyladenosine transferase [Chlorobaculum parvum NCIB 8327]
gi|226729768|sp|B3QMU5.1|RSMA_CHLP8 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|193085972|gb|ACF11248.1| dimethyladenosine transferase [Chlorobaculum parvum NCIB 8327]
Length = 274
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 80/144 (55%), Gaps = 12/144 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQ+++L+ I ++ + ++EGD+VLEIGPG G+L+ +L + AIEKD +
Sbjct: 14 KKKLGQNFLLDKNIPRKIVRESGIKEGDLVLEIGPGFGALSTAILEVMPSFTAIEKDPEL 73
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+RE I+ +++ DF+K + + SG V+ NIP++I++ ++
Sbjct: 74 ARFIREEHPEIN---LIEGDFLKVPLEP---------LTGSGKLAVLGNIPYSITSPILF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
+LL + L++Q E A R+
Sbjct: 122 RLLDNRHLIESATLMMQHEVAQRI 145
>gi|110834909|ref|YP_693768.1| ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2]
gi|122064277|sp|Q0VMV2.1|RSMA_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|110648020|emb|CAL17496.1| Ribosomal RNA adenine dimethylase [Alcanivorax borkumensis SK2]
Length = 280
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 10/164 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + + D++ +Q GD ++EIGPG G+LT LL + +E D+ +
Sbjct: 7 RKRFGQHFLHDRNLVDRMIRTLGLQTGDTLVEIGPGRGALTYPLLEELPHLHVVELDRDL 66
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ L+R+ + ++L + + D ++ R+ K + +V+ N+P+NIST +I
Sbjct: 67 IALLRQE-NTPERLTIHESDALRFDFRT--------LKPADKPLRVIGNLPYNISTPLIF 117
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
LL D S++ +LQ+E RL S T ++ ++I V ++
Sbjct: 118 HLLAQADAISDMTFMLQKEVVERLTA-SPGTRDWGRLSIMVQYH 160
>gi|219684472|ref|ZP_03539416.1| dimethyladenosine transferase [Borrelia garinii PBr]
gi|219672461|gb|EED29514.1| dimethyladenosine transferase [Borrelia garinii PBr]
Length = 281
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + ++E + + EIGPG G++T++LL + A E D
Sbjct: 29 PRKLWGQNYLINESIRQKIIESLDIKENEKIWEIGPGLGAMTDILLKKTNFLTAFEIDLK 88
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF K + + K+ +N+P+NI++ VI
Sbjct: 89 YSEILNEKFGKLKNFKLIKGDFFKKYPNEN-----------KNIDKIFSNLPYNIASKVI 137
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+VL +Q+E A R+
Sbjct: 138 SKLIE-ENFLKEMVLTVQKELADRI 161
>gi|421770168|ref|ZP_16206869.1| Dimethyladenosine transferase [Lactobacillus rhamnosus LRHMDP2]
gi|421772754|ref|ZP_16209407.1| Dimethyladenosine transferase [Lactobacillus rhamnosus LRHMDP3]
gi|411182696|gb|EKS49841.1| Dimethyladenosine transferase [Lactobacillus rhamnosus LRHMDP2]
gi|411183168|gb|EKS50308.1| Dimethyladenosine transferase [Lactobacillus rhamnosus LRHMDP3]
Length = 294
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ + +I ++ AAA V + D V+EIGPG G+LT L + V+
Sbjct: 15 LKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSQQDDVIEIGPGIGALTQFLADQAHQVV 74
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K ++ + + F+ + KVVAN+P+
Sbjct: 75 ALEIDDRLLPILAETLADYPNTTVVNEDVLKTNLTELVATHFDGNHT----LKVVANLPY 130
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
I+T ++ LL + +++Q+E A RL
Sbjct: 131 YITTPILLHLLRARLPLHSMTVMMQKEVAARL 162
>gi|334134055|ref|ZP_08507584.1| dimethyladenosine transferase [Paenibacillus sp. HGF7]
gi|333608402|gb|EGL19700.1| dimethyladenosine transferase [Paenibacillus sp. HGF7]
Length = 306
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + + + +AA + LEIGPG G+LT L V+A+E DQ +
Sbjct: 35 KKSLGQNFLTDGNVLRNIISAAELAPEKGALEIGPGIGALTQQLAKEAGRVVAVEIDQRL 94
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++RE + +V+ D +K +R L E + S VVAN+P+ I+T +I
Sbjct: 95 LPILRETLSPYPTAEVVHGDVLKLDLR----QLIEEKFSGLSGISVVANLPYYITTPIIM 150
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+LL +V+++Q+E A R+ +P EY ++I V FY
Sbjct: 151 KLLEEKLPLENIVVMIQKEVADRMAAKPG--GKEYGSLSIAVQFY 193
>gi|216263454|ref|ZP_03435449.1| dimethyladenosine transferase [Borrelia afzelii ACA-1]
gi|215980298|gb|EEC21119.1| dimethyladenosine transferase [Borrelia afzelii ACA-1]
Length = 274
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + ++E + + EIGPG G++T++LL + A E D
Sbjct: 22 PRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLGAMTDILLKKTNLLTAFEIDLK 81
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF+K + + K+ +N+P+NI++ VI
Sbjct: 82 YSEILNEKFGKLKNFKLIKGDFLKKY-----------PNENKNIDKIFSNLPYNIASKVI 130
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+V +Q+E A R+
Sbjct: 131 SKLIE-ENFLKEMVFTVQKELADRI 154
>gi|410679370|ref|YP_006931772.1| dimethyladenosine transferase [Borrelia afzelii HLJ01]
gi|408536758|gb|AFU74889.1| dimethyladenosine transferase [Borrelia afzelii HLJ01]
Length = 274
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + ++E + + EIGPG G++T++LL + A E D
Sbjct: 22 PRKLWGQNYLINENIRQKIIESLNIKENEKIWEIGPGLGAMTDILLKKTNLLTAFEIDLK 81
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF+K + + K+ +N+P+NI++ VI
Sbjct: 82 YSEILNEKFGKLKNFKLIKGDFLKKY-----------PNENKNIDKIFSNLPYNIASKVI 130
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+V +Q+E A R+
Sbjct: 131 SKLIE-ENFLKEMVFTVQKELADRI 154
>gi|424828023|ref|ZP_18252764.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium sporogenes PA 3679]
gi|365979506|gb|EHN15559.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium sporogenes PA 3679]
Length = 275
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 90/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLVDESVLEDIVEGAEISKEDTVIEIGPGVGTLTKELLEKAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKIDFN----GLMENKDS----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY + + V +Y
Sbjct: 128 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYY 169
>gi|194333711|ref|YP_002015571.1| dimethyladenosine transferase [Prosthecochloris aestuarii DSM 271]
gi|226732609|sp|B4S787.1|RSMA_PROA2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|194311529|gb|ACF45924.1| dimethyladenosine transferase [Prosthecochloris aestuarii DSM 271]
Length = 261
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 84/147 (57%), Gaps = 18/147 (12%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQ+++ + ++ +A +Q GD V+EIGPG G+LT+ +L + A+EKD+ +
Sbjct: 14 KKKLGQNFLTDRNTIRKIVQSAEIQPGDHVVEIGPGFGALTSAILEVCPSFTAVEKDRKL 73
Query: 176 VGLVRERFASIDQLK--VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+RE + S++ ++ +L+ DF K + G KV+ NIP++I++ +
Sbjct: 74 ADFIREEYPSVNLVESDILEVDFAKL--------------AEEGPVKVMGNIPYSITSPI 119
Query: 234 IKQLLP-MGDIFSEVVLLLQEETALRL 259
+ +LL I SE L++Q E ALRL
Sbjct: 120 LFKLLENRSHIISE-TLMMQHEVALRL 145
>gi|292670425|ref|ZP_06603851.1| dimethyladenosine transferase [Selenomonas noxia ATCC 43541]
gi|292647835|gb|EFF65807.1| dimethyladenosine transferase [Selenomonas noxia ATCC 43541]
Length = 292
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 9/165 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ + + AA + GD VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLIDVGVVRGIVEAAELAPGDTVLEIGPGIGTLTQGLAETGARVVAVEIDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + ++ D +K +I +L L E + KV AN+P+ I+T +I
Sbjct: 87 RVLAETLKGYDNVTIVPGDILKLNI-PEILGLKEGERF-----KVAANLPYYITTPIIMT 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V ++Q+E A+R+ P + +Y ++I V +++
Sbjct: 141 LLEQRLPIERLVTMVQKEVAVRMTARPG--SKDYGALSIAVQYFT 183
>gi|373497487|ref|ZP_09588011.1| dimethyladenosine transferase [Fusobacterium sp. 12_1B]
gi|404366584|ref|ZP_10971966.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185]
gi|313689428|gb|EFS26263.1| dimethyladenosine transferase [Fusobacterium ulcerans ATCC 49185]
gi|371963241|gb|EHO80811.1| dimethyladenosine transferase [Fusobacterium sp. 12_1B]
Length = 264
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 86/145 (59%), Gaps = 11/145 (7%)
Query: 116 RKSLGQHYMLN-SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ + E+ ++ +AV E D VLEIGPG G+LT +LL+ V+ +E D+
Sbjct: 6 KKKFGQNFLTDQKEVLRKIMEVSAVNENDTVLEIGPGEGALTALLLDTAEKVVTVEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++R++F + ++ D ++ ++ ++ +G KVVANIP+ I++ +I
Sbjct: 66 LEKILRKKFDGNPKYTLVMNDVLETDLKEYV---------GAG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ D+ E+ +++Q+E A R+
Sbjct: 116 NKLIENRDVIDEIYIMVQKEVAERI 140
>gi|418071100|ref|ZP_12708374.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus rhamnosus R0011]
gi|423080252|ref|ZP_17068877.1| dimethyladenosine transferase [Lactobacillus rhamnosus ATCC 21052]
gi|357538594|gb|EHJ22614.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus rhamnosus R0011]
gi|357543317|gb|EHJ25348.1| dimethyladenosine transferase [Lactobacillus rhamnosus ATCC 21052]
Length = 294
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ + +I ++ AAA V + D V+EIGPG G+LT L + V+
Sbjct: 15 LKRHGFHMRKGLGQNFLTDPQILQKIVAAADVSQQDDVIEIGPGIGALTQFLADQAHQVV 74
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E V+ ED +K ++ + + F+ + + KVVAN+P+
Sbjct: 75 ALEIDDRLLPILAETLTDYPNTTVVNEDVLKTNLTELVATHFDGKHT----LKVVANLPY 130
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
I+T ++ LL + +++Q+E A RL
Sbjct: 131 YITTPILLHLLQARLPLHSMTVMMQKEVAARL 162
>gi|153931501|ref|YP_001382487.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
19397]
gi|153937047|ref|YP_001386039.1| dimethyladenosine transferase [Clostridium botulinum A str. Hall]
gi|387816312|ref|YP_005676656.1| dimethyladenosine transferase [Clostridium botulinum H04402 065]
gi|259494241|sp|A7FQA9.1|RSMA_CLOB1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|152927545|gb|ABS33045.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
19397]
gi|152932961|gb|ABS38460.1| dimethyladenosine transferase [Clostridium botulinum A str. Hall]
gi|322804353|emb|CBZ01903.1| dimethyladenosine transferase [Clostridium botulinum H04402 065]
Length = 275
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 90/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKIDFN----ELMENKDS----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY + + V +Y
Sbjct: 128 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYY 169
>gi|373859308|ref|ZP_09602038.1| dimethyladenosine transferase [Bacillus sp. 1NLA3E]
gi|372450977|gb|EHP24458.1| dimethyladenosine transferase [Bacillus sp. 1NLA3E]
Length = 293
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A + E +EIGPG G+LT L + V+A E DQ +
Sbjct: 23 KKSLGQNFLIDPNILKRIVDHAEITEETGTIEIGPGIGALTEQLARSSKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E ++V+ +D +K +++ M E R S VVAN+P+ ++T +I
Sbjct: 83 LPILNETLDPYSNVEVIHQDVLKADVKTVM----EDRLSDIKDVMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ P T +Y ++I V +Y+
Sbjct: 139 KLLEEKLPIRGIVVMLQKEVAERITANPG--TKDYGSLSIAVQYYT 182
>gi|284048769|ref|YP_003399108.1| dimethyladenosine transferase [Acidaminococcus fermentans DSM
20731]
gi|283952990|gb|ADB47793.1| dimethyladenosine transferase [Acidaminococcus fermentans DSM
20731]
Length = 284
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 95/173 (54%), Gaps = 10/173 (5%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L++ G +K GQ++++N ++ +A A V GD+VLEIGPG G+LT L GA V
Sbjct: 16 LDTFGLRAKKKFGQNFLINEQVVRGIAREAQVGPGDLVLEIGPGIGTLTQALAETGAQVK 75
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
++E D+ ++ ++ + D ++++ D +K L + + + V AN+P+
Sbjct: 76 SVEIDRTLLPVLAKTLEGYDNVEIVPGDVLKVD-----LGAVTKHRPFT----VAANLPY 126
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T +I LL +V+++Q+E A R++ S +Y P+++ + +YS
Sbjct: 127 YITTPIIFALLEEDLPLQRLVVMVQKEVAERMIA-SPGGKDYGPLSLALQYYS 178
>gi|111115418|ref|YP_710036.1| dimethyladenosine transferase [Borrelia afzelii PKo]
gi|384207078|ref|YP_005592800.1| dimethyladenosine transferase [Borrelia afzelii PKo]
gi|123145677|sp|Q0SMR8.1|RSMA_BORAP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|110890692|gb|ABH01860.1| dimethyladenosine transferase [Borrelia afzelii PKo]
gi|342856962|gb|AEL69810.1| dimethyladenosine transferase [Borrelia afzelii PKo]
Length = 281
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 82/154 (53%), Gaps = 12/154 (7%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
+ L K PRK GQ+Y++N I ++ + ++E + + EIGPG G++T++LL
Sbjct: 20 QTLKEKKIAPRKLWGQNYLINENIRQKIIESLDIKENEKIWEIGPGLGAMTDILLKKTNL 79
Query: 166 VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
+ A E D ++ E+F + K+++ DF+K + + K+ +N+
Sbjct: 80 LTAFEIDLKYSEILNEKFGKLKNFKLIKGDFLKKY-----------PNENKNIDKIFSNL 128
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
P+NI++ VI +L+ + E+V +Q+E A R+
Sbjct: 129 PYNIASKVISKLIE-ENFLKEMVFTVQKELADRI 161
>gi|242045762|ref|XP_002460752.1| hypothetical protein SORBIDRAFT_02g034350 [Sorghum bicolor]
gi|241924129|gb|EER97273.1| hypothetical protein SORBIDRAFT_02g034350 [Sorghum bicolor]
Length = 356
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 80/154 (51%), Gaps = 19/154 (12%)
Query: 112 GRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAI 169
GRF K GQH + N + D + AA+ GD +LE+GPGTG+LT LL + A V+A+
Sbjct: 40 GRFRLHKPRGQHLLTNPRVLDAIVRRAAISSGDAILEVGPGTGNLTARLLASHAARVVAV 99
Query: 170 EKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
E D MV V R A++ D+L V+ D V+ F VANIP
Sbjct: 100 EIDPRMVESVTARAAALGLADKLTVIAGDAVEVEFPE--------------FDVCVANIP 145
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
+ IS+ +I +LL F LLLQ+E A RLV
Sbjct: 146 YGISSPLIAKLLFGPYRFRTATLLLQKEFARRLV 179
>gi|381152828|ref|ZP_09864697.1| dimethyladenosine transferase [Methylomicrobium album BG8]
gi|380884800|gb|EIC30677.1| dimethyladenosine transferase [Methylomicrobium album BG8]
Length = 267
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ +S + + A ++ G +EIGPG G+LT LL AGA + IE D+++
Sbjct: 6 RKRFGQNFLHDSSVIRHIIACLDIRSGQHWVEIGPGQGALTEPLLQAGARLDVIELDRNL 65
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V L++++FA L + D +K S + ER ++V N+P+NIST ++
Sbjct: 66 VALLKKKFAGRPHLGIHSADALKFDFSS-LAEQGER-------LRIVGNLPYNISTPLMF 117
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL D ++ +LQ+E RL EP +Y +++ + +Y
Sbjct: 118 HLLNSADCIEDMHFMLQKEVVDRLCAEPG--NKQYGRLSVMMRYY 160
>gi|148378088|ref|YP_001252629.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
3502]
gi|148287572|emb|CAL81637.1| dimethyladenosine transferase [Clostridium botulinum A str. ATCC
3502]
Length = 278
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 90/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 19 KNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 79 PILQEELKEYNNFTLIHKDALKIDFN----ELMENKDS----IKLVANLPYYVTTPIISR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY + + V +Y
Sbjct: 131 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYY 172
>gi|83312817|ref|YP_423081.1| dimethyladenosine transferase [Magnetospirillum magneticum AMB-1]
gi|119365030|sp|Q2W0V3.1|RSMA_MAGSA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|82947658|dbj|BAE52522.1| Dimethyladenosine transferase [Magnetospirillum magneticum AMB-1]
Length = 281
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 13/165 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQH 174
RKSLGQH++ + + ++A AA V+EIGPG G LT LL+AGA V+AIE+D
Sbjct: 19 RKSLGQHFLFDLNLTGRIARAAGDLTVGSVIEIGPGPGGLTRALLDAGARQVIAIERDDR 78
Query: 175 MVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ + E A +L+++ D + + + L RR +VAN+P+NIST +
Sbjct: 79 AIAIQNEIAEAYPGRLEIMAADAMT--VDAAELGEVPRR--------IVANLPYNISTAL 128
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
+ L D F +VL+ Q+E RL P R+ Y +++ +
Sbjct: 129 LLGWLRRADAFERLVLMFQKEVVDRLAAPP-RSEHYGRLSVITQW 172
>gi|357059271|ref|ZP_09120114.1| dimethyladenosine transferase [Selenomonas infelix ATCC 43532]
gi|355372174|gb|EHG19516.1| dimethyladenosine transferase [Selenomonas infelix ATCC 43532]
Length = 289
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 9/182 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
D T LN+ K LGQ+++++ + + AA + D VLEIGPG G+LT L
Sbjct: 10 DPKVTRHILNAFHLRASKRLGQNFLVDRGVVQGIVDAAELSPADTVLEIGPGIGTLTQGL 69
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
GA V+A+E D+ + ++ E D + ++ D +K +I + R +
Sbjct: 70 AETGARVVAVELDKKLPAVLAETLKGYDNVTIVPGDILKLNIMETL------RLRAGERC 123
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T +I LL +V ++Q+E A+R+ P + +Y ++I V +
Sbjct: 124 KVVANLPYYITTPIIMTLLEQRLPIERLVTMVQKEVAVRMTARPG--SKDYGALSIAVQY 181
Query: 279 YS 280
++
Sbjct: 182 FT 183
>gi|39936129|ref|NP_948405.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009]
gi|192291847|ref|YP_001992452.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1]
gi|62900541|sp|Q6N5B4.1|RSMA_RHOPA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226732615|sp|B3Q9S4.1|RSMA_RHOPT RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|39649983|emb|CAE28507.1| dimethyladenosine transferase [Rhodopseudomonas palustris CGA009]
gi|192285596|gb|ACF01977.1| dimethyladenosine transferase [Rhodopseudomonas palustris TIE-1]
Length = 287
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 16/151 (10%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQH 174
RKSLGQ+++L+ + ++A AA EG V+EIGPG G LT LL GA V+AIE+D+
Sbjct: 22 RKSLGQNFLLDLNLTARIARAAGPLEGVTVVEIGPGPGGLTRALLATGAKRVIAIERDER 81
Query: 175 MVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG-FAKVVANIPFNISTD 232
+G + E A +L ++ D ++ F+ R +G A++VAN+P+NI+T
Sbjct: 82 ALGALEEIAAHYPGRLDIISGDAME----------FDPRPLLNGDRARIVANLPYNIATP 131
Query: 233 VIKQLL---PMGDIFSEVVLLLQEETALRLV 260
++ L P + +VL+ Q E A R+V
Sbjct: 132 LLIGWLCAEPWPPWYEMMVLMFQREVAQRIV 162
>gi|329768941|ref|ZP_08260368.1| dimethyladenosine transferase [Gemella sanguinis M325]
gi|328836658|gb|EGF86316.1| dimethyladenosine transferase [Gemella sanguinis M325]
Length = 286
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 92/178 (51%), Gaps = 5/178 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ++++++ I +++ A + + V+EIGPG GSLT +
Sbjct: 8 TFEILKKHGFTFKKSLGQNFLIDANILNRIVDGAGINDKVGVIEIGPGIGSLTEAVAKRA 67
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V++ E D ++ ++ E A ++++ D +K + + E + S VVA
Sbjct: 68 KRVISFEIDGRLLPILSETLADYSNVEIINNDILKVDVD----KIIEEKMSDCEKIMVVA 123
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG 281
N+P+ I+T ++ L+ V+++Q E A RL + T +Y + I +N+Y+
Sbjct: 124 NLPYYITTPILTHLIENTKRIDGYVVMMQREVANRL-NAKVGTKDYNSLTILLNYYTN 180
>gi|377831023|ref|ZP_09814011.1| dimethyladenosine transferase [Lactobacillus mucosae LM1]
gi|377555120|gb|EHT16811.1| dimethyladenosine transferase [Lactobacillus mucosae LM1]
Length = 281
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 93/165 (56%), Gaps = 8/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + + + AAA+ + D V+EIGPG G+LT L A V+A+E D +
Sbjct: 9 KKGFGQNFLTDLNVLKNIVKAAAITKEDNVIEIGPGLGALTEQLAQAAGQVVALEIDTDL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNISTDVI 234
+ ++ E + D +KVL +D +K + +L + + + G KVVAN+P+ I++ ++
Sbjct: 69 LPVLDEVLSPYDNVKVLNQDVLKADLP----ALIQEQFADPGRPIKVVANLPYYITSPIL 124
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNF 278
LL +S + +++Q+E A RL +P T EY + + + +
Sbjct: 125 MGLLESPVAWSAICVMMQKEVAQRLTAQPG--TKEYGSLTLAIEY 167
>gi|294461690|gb|ADE76404.1| unknown [Picea sitchensis]
Length = 390
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + + A V+E D VLEIGPGTG+LT LL A V+A+E D M+
Sbjct: 73 KSRGQHILTNPRVLKSIVDKAGVRETDTVLEIGPGTGNLTLELLQAARRVIAVEIDPRMI 132
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
V +R + + L+ +R +L R F VANIP+ IS+ +I +
Sbjct: 133 EAVHKRVQGTEMAQRLE------LVRGDIL-----RTDLPSFDICVANIPYQISSPLIFK 181
Query: 237 LLPMGDIFSEVVLLLQEETALRLV 260
LL F L+LQ+E RLV
Sbjct: 182 LLSTMPKFRNATLMLQKEFGRRLV 205
>gi|226947305|ref|YP_002802396.1| dimethyladenosine transferase [Clostridium botulinum A2 str. Kyoto]
gi|259494243|sp|C1FQ40.1|RSMA_CLOBJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226840947|gb|ACO83613.1| dimethyladenosine transferase [Clostridium botulinum A2 str. Kyoto]
Length = 275
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 90/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKIDFN----ELMENKDS----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY + + V +Y
Sbjct: 128 LLTEKCNFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYY 169
>gi|149922616|ref|ZP_01911044.1| dimethyladenosine transferase [Plesiocystis pacifica SIR-1]
gi|149816502|gb|EDM75999.1| dimethyladenosine transferase [Plesiocystis pacifica SIR-1]
Length = 301
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G PRKS GQ+++ E++ ++AAAA G V+EIG G G+LT LL AGA V
Sbjct: 15 LARHGLAPRKSWGQNFLHAFEVHLEIAAAAGAGPGSTVVEIGAGLGTLTAHLLAAGAEVD 74
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
AIE+D+ + ++R ++ ++ + D VK +H +L E K +V N+P+
Sbjct: 75 AIERDRDLCAVLRTELGALPGFRLHEADAVKFDYGAHARALLEAGKPRPA---IVGNLPY 131
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEP 262
++ ++ LL + ++++Q+E A RL P
Sbjct: 132 QLTGALLFALLEYDAVTGPWIVMVQKEVADRLCSP 166
>gi|259501903|ref|ZP_05744805.1| dimethyladenosine transferase [Lactobacillus antri DSM 16041]
gi|259170080|gb|EEW54575.1| dimethyladenosine transferase [Lactobacillus antri DSM 16041]
Length = 297
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 82/144 (56%), Gaps = 3/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + + + +AA + + D V+EIGPG G+LT L A VLA+E DQ +
Sbjct: 25 KKGFGQNFLTDLNVLKNIVSAAEISKDDNVIEIGPGIGALTEQLAQAAGEVLALEIDQDL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + VL +D ++ ++ + F + KVVAN+P+ I++ ++
Sbjct: 85 IPVLAEVLAPYDNVTVLNQDVLQANLPELIKQQF---ADPAKPVKVVANLPYYITSPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL ++ + +++Q+E A RL
Sbjct: 142 NLLAAPVDWAAICVMMQKEVAQRL 165
>gi|220935881|ref|YP_002514780.1| dimethyladenosine transferase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219997191|gb|ACL73793.1| dimethyladenosine transferase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 267
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAI 169
S+ PRK GQH++ + I +++ AA A + G+ ++EIGPG G+LT LL + +
Sbjct: 2 SESHIPRKRFGQHFLHETAIIERMVAAIAPRPGEALVEIGPGLGALTAPLLERCRVLHVV 61
Query: 170 EKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
E D+ ++ + ER + +L+V Q D ++ F G +VV N+P+NI
Sbjct: 62 ELDRDVIPPLVERCQGLGELRVHQADALRFD--------FATLAPEGGQLRVVGNLPYNI 113
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
ST +I LL ++ LLQ+E RL + T +Y +++ ++
Sbjct: 114 STPLIFHLLKSAPRIRDMHFLLQKEVVDRLAA-APNTRDYGRLSVMTQYH 162
>gi|449974425|ref|ZP_21815287.1| dimethyladenosine transferase [Streptococcus mutans 11VS1]
gi|450097797|ref|ZP_21857657.1| dimethyladenosine transferase [Streptococcus mutans SF1]
gi|450171121|ref|ZP_21883843.1| dimethyladenosine transferase [Streptococcus mutans SM4]
gi|449178368|gb|EMB80634.1| dimethyladenosine transferase [Streptococcus mutans 11VS1]
gi|449222179|gb|EMC21913.1| dimethyladenosine transferase [Streptococcus mutans SF1]
gi|449244499|gb|EMC42872.1| dimethyladenosine transferase [Streptococcus mutans SM4]
Length = 291
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L A V+ E D +
Sbjct: 21 KKSFGQNFLTDTNILQKIVDTAEIDKTVNVIEIGPGIGALTEFLAENAAEVMTFEIDDRL 80
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + D +KV+ ED +K S + + + + KVVAN+P+ I+T ++
Sbjct: 81 VPILADTLRDFDNIKVVNEDILK----SDLQTCIKEFANPDLPIKVVANLPYYITTPILM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 137 HLIESKIPFAEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 179
>gi|422417658|ref|ZP_16494613.1| dimethyladenosine transferase [Listeria seeligeri FSL N1-067]
gi|313635198|gb|EFS01504.1| dimethyladenosine transferase [Listeria seeligeri FSL N1-067]
Length = 295
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + +KV+ D +K + + S F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNVKVVHGDVLKADVEEVIASQFTKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY
Sbjct: 128 NLPYYVTTPIILKLLHDNIPVDSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFY 182
>gi|344338306|ref|ZP_08769238.1| Ribosomal RNA small subunit methyltransferase A [Thiocapsa marina
5811]
gi|343801588|gb|EGV19530.1| Ribosomal RNA small subunit methyltransferase A [Thiocapsa marina
5811]
Length = 264
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 15/155 (9%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ + ++ D++ A A G+ V+EIGPG G++T LL A ++ +E D+ +
Sbjct: 6 RKRFGQNFLHDRQVIDRIHGAIAATPGERVVEIGPGQGAITEGLLTAVGSLDVVELDRDL 65
Query: 176 VGLVRERFASIDQLKVLQED---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
VG +R+R ++ L++ Q D F C + L ++V N+P+NIST
Sbjct: 66 VGPLRDRLGALGALRIHQADALSFDLCALPDEGERL-----------RLVGNLPYNISTP 114
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRT 266
++ + L D ++ L+LQ+E R+V EP +T
Sbjct: 115 LLFRFLEQADCIEDMHLMLQKEVVERIVAEPGDKT 149
>gi|375090111|ref|ZP_09736430.1| dimethyladenosine transferase [Facklamia languida CCUG 37842]
gi|374566004|gb|EHR37259.1| dimethyladenosine transferase [Facklamia languida CCUG 37842]
Length = 299
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 90/162 (55%), Gaps = 5/162 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++ +I ++ A + + V+EIGPG G+LT L V + E DQ
Sbjct: 28 KKSLGQNFLVEPKILQRMVEVAGITDQTTVIEIGPGIGALTEFLALEAKKVYSFEIDQRF 87
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++E A ++V+ +DF+K + +++ +++ VVAN+P+ I+T +I
Sbjct: 88 VEILKETLADYSNVQVVGQDFLKVDLHD---VVYQDLQTADRLV-VVANLPYYITTPIIM 143
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVN 277
+L+ F +V+L+Q+E A R+ S+ T Y + I +
Sbjct: 144 KLIESNLPFQSLVMLMQKEVAERMT-ASVGTKAYNSLTIAIQ 184
>gi|417885246|ref|ZP_12529401.1| dimethyladenosine transferase [Lactobacillus oris F0423]
gi|341595901|gb|EGS38538.1| dimethyladenosine transferase [Lactobacillus oris F0423]
Length = 297
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + + + +AA + D V+EIGPG G+LT L A VLA+E DQ +
Sbjct: 25 KKGFGQNFLTDLNVLKNIVSAAEITRDDNVIEIGPGIGALTEQLAQAAGEVLALEIDQDL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + VL +D ++ ++ + F S KVVAN+P+ I++ ++
Sbjct: 85 IPVLAEVLAPYDNVTVLNQDVLQANLPELIKQQF---TDPSRPIKVVANLPYYITSPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL ++ + +++Q+E A RL
Sbjct: 142 NLLAAPVDWAAICVMMQKEVAQRL 165
>gi|312865682|ref|ZP_07725906.1| dimethyladenosine transferase [Streptococcus downei F0415]
gi|311098803|gb|EFQ57023.1| dimethyladenosine transferase [Streptococcus downei F0415]
Length = 284
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQ+++ ++ I ++ + + V+EIGPG G+LT L A V+ E D +
Sbjct: 14 KKSFGQNFLTDTNILQKIVDTTEIDQNVNVIEIGPGIGALTEFLAEQAAEVMTFEIDDRL 73
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + D + V+ ED +K +++ + + + + KVVAN+P+ I+T ++
Sbjct: 74 IPILADTLRDFDNVTVINEDILKSDLQTQIKNF----ANPNLPIKVVANLPYYITTPILM 129
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L+ F+E V+++Q+E A R+ EP+ T Y ++I V +Y
Sbjct: 130 HLIESKIPFAEFVVMMQKEVANRISAEPN--TKAYGSLSIAVQYY 172
>gi|182677647|ref|YP_001831793.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182633530|gb|ACB94304.1| dimethyladenosine transferase [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 297
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 100/194 (51%), Gaps = 13/194 (6%)
Query: 90 CIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149
C+ C + DD + + + G +K+LGQ+++ + + ++A AA + +++EIG
Sbjct: 2 CLCCMSATKDDLPPLREVVATYGLAAKKALGQNFLFDLNLTGRIARAADPSKTALIVEIG 61
Query: 150 PGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLS 207
PG G LT LL GA V+AIE+D+ + + E A +L+V+ D + L
Sbjct: 62 PGPGGLTRALLAEGAPKVIAIEQDERCLPALAEIAAHYPGRLEVVAGDALTTD-----LG 116
Query: 208 LFERRKSSSGFAKVVANIPFNISTDVIKQLL---PMGDIFSEVVLLLQEETALRLVEPSL 264
L +S A++ AN+P+NI T ++ + + P F +VL+ Q E A R+V
Sbjct: 117 LL---VASYRPARICANLPYNIGTALLTRWIETEPWPPWFDRLVLMFQREVAERIVATPA 173
Query: 265 RTSEYRPINIFVNF 278
+ ++Y + + N+
Sbjct: 174 QRADYGRLAVLCNW 187
>gi|312870255|ref|ZP_07730386.1| dimethyladenosine transferase [Lactobacillus oris PB013-T2-3]
gi|311094278|gb|EFQ52591.1| dimethyladenosine transferase [Lactobacillus oris PB013-T2-3]
Length = 297
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + + + +AA + D V+EIGPG G+LT L A VLA+E DQ +
Sbjct: 25 KKGFGQNFLTDLNVLKNIVSAAEITRDDNVIEIGPGIGALTEQLAQAAGEVLALEIDQDL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D + VL +D ++ ++ + F S KVVAN+P+ I++ ++
Sbjct: 85 IPVLAEVLAPYDNVTVLNQDVLQANLPELIKQQF---TDPSRPIKVVANLPYYITSPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL ++ + +++Q+E A RL
Sbjct: 142 NLLAAPVDWAAICVMMQKEVAQRL 165
>gi|329925506|ref|ZP_08280380.1| dimethyladenosine transferase [Paenibacillus sp. HGF5]
gi|328939789|gb|EGG36129.1| dimethyladenosine transferase [Paenibacillus sp. HGF5]
Length = 294
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 89/165 (53%), Gaps = 5/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + E LEIGPG G+LT L TV A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILYKIVEAAGLDEDKGALEIGPGIGALTEKLAQTAGTVTAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E ++V D +K + LF + VVAN+P+ ++T ++
Sbjct: 85 IPILKEVLEPYGNVRVHHGDVLKVDLH----ELFRQDFGDVSKVSVVANLPYYVTTPILM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+LL +V+++Q+E A R+ + + +Y ++I V +YS
Sbjct: 141 KLLEEKLPLENIVVMIQKEVAERMAA-APGSKDYGSLSIAVQYYS 184
>gi|365903726|ref|ZP_09441549.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus malefermentans KCTC 3548]
Length = 296
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 93/169 (55%), Gaps = 16/169 (9%)
Query: 94 ARSQD--DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPG 151
AR+Q + YH IK KSLGQ+++ + + +++ AA + E D V+E+GPG
Sbjct: 12 ARTQAIINRYHLKIK----------KSLGQNFLTDLTVLNKIVEAAGLSEKDDVIEVGPG 61
Query: 152 TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER 211
GSLT L VLA E D++++ ++ E ++++ +D ++ ++ + S F+
Sbjct: 62 IGSLTEFLAKNANKVLAFEIDENLIQVLEETLDPYKNVEIVYQDILEANLPEIVNSKFDM 121
Query: 212 RKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
+ K+VAN+P+ I+T ++ +L F + +++Q+E A RLV
Sbjct: 122 SRP----LKLVANLPYYITTPILMGVLQGSVTFESITVMMQKEVAERLV 166
>gi|349699303|ref|ZP_08900932.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Gluconacetobacter europaeus LMG 18494]
Length = 283
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 84/146 (57%), Gaps = 12/146 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQH 174
RK+LGQH++L+ I ++AA A G V+E+GPG G LT LL+ AT ++A+E D
Sbjct: 25 RKALGQHFLLDPAITARIAALAGDLAGQHVVEVGPGPGGLTRALLDTDATSIVAVEVDTR 84
Query: 175 MVGLVRERFA-SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
V ++ E A + +L++++ D ++C + + L R +++AN+P+N+ T +
Sbjct: 85 AVAVITELAALAPGRLRIIEADAMRCDLTT--LCPAPR--------QIIANLPYNVGTPL 134
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL 259
+ L +S + L+ Q+E A R+
Sbjct: 135 LVGWLRQAAAWSRLTLMFQQEVAERI 160
>gi|150014951|ref|YP_001307205.1| dimethyladenosine transferase [Clostridium beijerinckii NCIMB 8052]
gi|149901416|gb|ABR32249.1| dimethyladenosine transferase [Clostridium beijerinckii NCIMB 8052]
Length = 281
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 88/164 (53%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + D + A V D ++EIGPG G+LT LL V +IE D ++
Sbjct: 21 KSLGQNFLVDDSVLDDIVNGAEVNNEDFIIEIGPGVGTLTAQLLMKAKKVTSIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + ++ +D +K L KS K+VAN+P+ ++T +I +
Sbjct: 81 PILEQELGEHKNFSLIHKDALKVDFN----ELIGDEKS----VKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL G F + +++Q+E A R+ EP+ + EY +++ V +Y
Sbjct: 133 LLKGGYNFKSLTIMIQKEVAERINAEPNCK--EYGALSVLVQYY 174
>gi|331002316|ref|ZP_08325834.1| dimethyladenosine transferase [Lachnospiraceae oral taxon 107 str.
F0167]
gi|330410132|gb|EGG89566.1| dimethyladenosine transferase [Lachnospiraceae oral taxon 107 str.
F0167]
Length = 292
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ A+ + D+ +EIGPG GSLT L N V+AIE D+++
Sbjct: 22 QKKFGQNFLIDTHVLDKICLASGLGGNDLAIEIGPGIGSLTQYLANTAKAVVAIEIDKNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A+ + ++ DF+K ++ ++ ++ ++VAN+P+ I+T +I
Sbjct: 82 LPILNETLANYKNISIINADFLKIDLKK-LIEDCRQKYGEFENIRIVANLPYYITTPIIM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+L + +++Q+E A R+ + +Y +++ V +YS
Sbjct: 141 NVLESHIHIDSITVMIQKEVADRM-QALPGGKDYGALSLAVQYYS 184
>gi|358066478|ref|ZP_09153004.1| ribosomal RNA small subunit methyltransferase A [Clostridium
hathewayi WAL-18680]
gi|356695230|gb|EHI56863.1| ribosomal RNA small subunit methyltransferase A [Clostridium
hathewayi WAL-18680]
Length = 289
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + +++ AA V + D+VLEIGPG G++T L V+A+E D+++
Sbjct: 22 QKKFGQNFLIDTHVLEKIIDAAGVTKEDMVLEIGPGIGTMTQYLAENARQVVAVEIDKNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + VL +D +K I + R KVVAN+P+ I+T +I
Sbjct: 82 IPILEETLKEYDNVTVLNDDILKVDIGRLAEEYNDGRP-----IKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P + +Y +++ V +Y+
Sbjct: 137 GLFESNVPVDNITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYA 180
>gi|170761464|ref|YP_001785410.1| dimethyladenosine transferase [Clostridium botulinum A3 str. Loch
Maree]
gi|259494246|sp|B1KRY8.1|RSMA_CLOBM RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|169408453|gb|ACA56864.1| dimethyladenosine transferase [Clostridium botulinum A3 str. Loch
Maree]
Length = 275
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 90/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL V +IE D ++
Sbjct: 16 KNLGQNFLVDESVLEDIIKGAEISKEDTVIEIGPGVGTLTKELLERAKEVYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKIDFN----GLMENKDS----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY + + V +Y
Sbjct: 128 LLKEKCDFKSLTIMIQKEVAERIDAEPNCK--EYGSLTVLVQYY 169
>gi|414590381|tpg|DAA40952.1| TPA: hypothetical protein ZEAMMB73_963520 [Zea mays]
Length = 361
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 79/154 (51%), Gaps = 19/154 (12%)
Query: 112 GRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAI 169
GRF K GQH + N + D +A AA+ GD VLE+GPGTG+LT LL + A V A+
Sbjct: 44 GRFRLHKPRGQHLLTNPRVLDAIARHAAISPGDAVLEVGPGTGNLTARLLASQAARVTAV 103
Query: 170 EKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
E D MV V R A++ + KV+ D V+ F VANIP
Sbjct: 104 EIDPRMVEAVTARAAALGLAHKFKVIAGDAVEVEFPE--------------FDVCVANIP 149
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
+ IS+ +I +LL F LLLQ+E A RLV
Sbjct: 150 YGISSPLIAKLLFGPYRFRTATLLLQKEFARRLV 183
>gi|366087169|ref|ZP_09453654.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Lactobacillus zeae KCTC 3804]
Length = 298
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK LGQ+++ + +I ++ AAA + D V+EIGPG G+LT L ++ V+A+E D+ +
Sbjct: 25 RKGLGQNFLTDPQILQKIVAAADLSSQDDVIEIGPGIGALTQFLADSAHQVVALEIDERL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A V+ ED +K + + + F+ + + KVVAN+P+ I+T ++
Sbjct: 85 LPILAETLADYPNTAVVNEDVLKTDLSALVAEHFDGKHT----LKVVANLPYYITTPILL 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL + +++Q+E A RL
Sbjct: 141 HLLRARLPLHSMTVMMQKEVAARL 164
>gi|188584688|ref|YP_001916233.1| dimethyladenosine transferase [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|254807876|sp|B2A3L9.1|RSMA_NATTJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|179349375|gb|ACB83645.1| dimethyladenosine transferase [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 302
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 85/154 (55%), Gaps = 9/154 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSLGQ+++++ I ++ AAA ++E DIVLEIGPG G+LT + + AIE DQ
Sbjct: 20 PKKSLGQNFLVDGNIIQKIIAAAELKEQDIVLEIGPGLGTLTRDMSFYVNEIFAIELDQR 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE---------RRKSSSGFAKVVANI 225
M+ +++E S D + ++ D +K + + E ++ + K V+N+
Sbjct: 80 MIDILQETVGSCDNVNIIHNDALKLDYQELISDFIEFSPAQLQCKSKQINPKNLKAVSNL 139
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
P+ I++ ++ +L S +VL++Q E A R
Sbjct: 140 PYYIASPLVLKLAKEKVPLSVMVLMVQREVADRF 173
>gi|424925257|ref|ZP_18348618.1| dimethyladenosine transferase [Pseudomonas fluorescens R124]
gi|404306417|gb|EJZ60379.1| dimethyladenosine transferase [Pseudomonas fluorescens R124]
Length = 272
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + + GD +LEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSISAKSGDRMLEIGPGQGALTAGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNTLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL I ++ +LQ+E RL
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERL 145
>gi|167646487|ref|YP_001684150.1| dimethyladenosine transferase [Caulobacter sp. K31]
gi|167348917|gb|ABZ71652.1| dimethyladenosine transferase [Caulobacter sp. K31]
Length = 288
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 11/144 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH++L+ I ++A A V EGD V+E+GPG G LT LL GA V+A+E D+ +
Sbjct: 37 KSFGQHFLLDLNITRKIARLAGVGEGDTVIEVGPGPGGLTRTLLETGARVVAVEMDKRFL 96
Query: 177 GLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ + + D +L ++Q D +K + + + G A +V+N+P+N+ T ++
Sbjct: 97 PLLEDLSVAADGRLTIVQGDALKVDMAA----------VAGGPAHMVSNLPYNVGTPLLI 146
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
L + L+ Q+E A R+
Sbjct: 147 NWLTGPFRPLSMTLMFQKEVADRI 170
>gi|421836040|ref|ZP_16270634.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium botulinum CFSAN001627]
gi|409742176|gb|EKN41682.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium botulinum CFSAN001627]
Length = 278
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL + +IE D ++
Sbjct: 19 KNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEIYSIELDGDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 79 PILQEELKEYNNFTLIHKDALKIDFN----ELMENKDS----IKLVANLPYYVTTPIISR 130
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY + + V +Y
Sbjct: 131 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYY 172
>gi|256830231|ref|YP_003158959.1| dimethyladenosine transferase [Desulfomicrobium baculatum DSM 4028]
gi|256579407|gb|ACU90543.1| dimethyladenosine transferase [Desulfomicrobium baculatum DSM 4028]
Length = 280
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 81/145 (55%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P++SLGQ+++ + I ++ A+ + GD VLEIGPG G+LT +L V+A+EKD
Sbjct: 9 PKRSLGQNFLSDPNICRRIVASLELAPGDPVLEIGPGRGALTRILAGHDGPVMALEKDSE 68
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+V ++ F ++ + DF +E + G + ++ N+P+N+++ +I
Sbjct: 69 LVSWIKAEFPAVGVVHADGLDFC-----------WEGTRRLPGLS-LIGNLPYNVASPMI 116
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+++ F ++ ++Q+E ALRL
Sbjct: 117 WEMVSRCRSFRSMLFMVQKEVALRL 141
>gi|343127892|ref|YP_004777823.1| dimethyladenosine transferase [Borrelia bissettii DN127]
gi|342222580|gb|AEL18758.1| dimethyladenosine transferase [Borrelia bissettii DN127]
Length = 281
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + ++E + + EIGPG G++T +LL + E D
Sbjct: 29 PRKLWGQNYLINESIRQKIIGSLDIKENEKIWEIGPGLGAMTEILLKKTNLLTVFEIDLK 88
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF+K + + + K+ +N+P+NI++ VI
Sbjct: 89 YSEILNEKFGKLKNFKLIKGDFLKKY-----------KNENQNIDKIFSNLPYNIASKVI 137
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+V +Q+E A R+
Sbjct: 138 SKLIE-ENFLKEMVFTVQKELADRI 161
>gi|168177414|ref|ZP_02612078.1| dimethyladenosine transferase [Clostridium botulinum NCTC 2916]
gi|182671129|gb|EDT83103.1| dimethyladenosine transferase [Clostridium botulinum NCTC 2916]
Length = 275
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + A + + D V+EIGPG G+LT LL + +IE D ++
Sbjct: 16 KNLGQNFLIDESVLEDIIEGAEINKEDTVIEIGPGVGTLTKELLERAKEIYSIELDGDLI 75
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++ +D +K L E + S K+VAN+P+ ++T +I +
Sbjct: 76 PILQEELKEYNNFTLIHKDALKIDFN----ELMENKDS----IKLVANLPYYVTTPIISR 127
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL F + +++Q+E A R+ EP+ + EY + + V +Y
Sbjct: 128 LLTEKCDFKSLTIMIQKEVAERINAEPNCK--EYGSLTVLVQYY 169
>gi|407797369|ref|ZP_11144312.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Salimicrobium sp. MJ3]
gi|407018252|gb|EKE30981.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Salimicrobium sp. MJ3]
Length = 291
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 88/165 (53%), Gaps = 5/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I + A + E +EIGPG G+LT L +V A E DQ +
Sbjct: 24 KKSLGQNFLVDVNILKNMLCHAGISENTAAIEIGPGIGALTEQLALHAGSVTAFEIDQRL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ E +S + ++ ED +K I + L + +VVAN+P+ I+T ++
Sbjct: 84 VPILEEELSSFENATIINEDILKADIDQVVRELARDHEE----VRVVANLPYYITTPILM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+LL F + +++Q+E A R+ S T Y ++I V +Y+
Sbjct: 140 RLLMDRLPFQSITVMIQKEVAERMA-ASPGTKSYGSLSIAVQYYT 183
>gi|421874161|ref|ZP_16305768.1| dimethyladenosine transferase [Brevibacillus laterosporus GI-9]
gi|372456816|emb|CCF15317.1| dimethyladenosine transferase [Brevibacillus laterosporus GI-9]
Length = 292
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AA + + V+EIGPG G+LT L V+AIE DQ +
Sbjct: 26 KKSLGQNFLTDINILHNIIDAAELSKDKAVIEIGPGIGALTEQLCRVAGKVMAIEIDQRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ D +K + +L S VVAN+P+ ++T ++
Sbjct: 86 LPILEDTLSPYDNITVVHGDVLKLDVA----ALIAEHLSGCSGVSVVANLPYYVTTPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
LL G +V+++Q+E A R+ +P T +Y +++ FY+
Sbjct: 142 GLLESGIELDHIVVMIQKEVAERIAAKPG--TKDYGSLSVAAQFYA 185
>gi|291280249|ref|YP_003497084.1| dimethyladenosine transferase [Deferribacter desulfuricans SSM1]
gi|290754951|dbj|BAI81328.1| dimethyladenosine transferase [Deferribacter desulfuricans SSM1]
Length = 269
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
Query: 105 IKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
IKA S+ +KSLGQH++ N ++ + ++E D V+EIGPG G LT +L G
Sbjct: 5 IKAYKSEFNKTKKSLGQHFLTNKHFISEIVSFLDLKEHDNVVEIGPGCGVLTYEILQKGV 64
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
+ ++ D + + LK++ +DF++ R G K N
Sbjct: 65 NLTVVDIDSDVCDFLSRYLYYFKNLKIINKDFIEI----------TRDDLPDGKLKFAGN 114
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
+P+N+S + ++ + D + + Q+E A RL EP +T Y ++IF +Y
Sbjct: 115 LPYNVSVKIFEKCVDFIDDIELMTFMFQKEVADRLTSEPCSKT--YSSLSIFAQYY 168
>gi|168205777|ref|ZP_02631782.1| dimethyladenosine transferase [Clostridium perfringens E str.
JGS1987]
gi|168209755|ref|ZP_02635380.1| dimethyladenosine transferase [Clostridium perfringens B str. ATCC
3626]
gi|168217634|ref|ZP_02643259.1| dimethyladenosine transferase [Clostridium perfringens NCTC 8239]
gi|170662648|gb|EDT15331.1| dimethyladenosine transferase [Clostridium perfringens E str.
JGS1987]
gi|170712059|gb|EDT24241.1| dimethyladenosine transferase [Clostridium perfringens B str. ATCC
3626]
gi|182380335|gb|EDT77814.1| dimethyladenosine transferase [Clostridium perfringens NCTC 8239]
Length = 285
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 88/164 (53%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + A V E D+V+EIGPG G+LT LL V+AIE D ++
Sbjct: 24 KSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVGTLTVQLLKRAKRVVAIELDSSLI 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + +++ D +K F + K+VAN+P+ ++T +I
Sbjct: 84 PILTAELGDNPKFQLIHNDALKVD--------FNEIIGAEKSVKLVANLPYYVTTPIIVN 135
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL G F + +++Q+E A R+ EP+ + +Y ++I V +Y
Sbjct: 136 LLKGGYNFKSLTIMIQKEVAERMNAEPNCK--DYGALSILVQYY 177
>gi|365858076|ref|ZP_09398033.1| dimethyladenosine transferase [Acetobacteraceae bacterium AT-5844]
gi|363714738|gb|EHL98223.1| dimethyladenosine transferase [Acetobacteraceae bacterium AT-5844]
Length = 275
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 11/147 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQH 174
RKSLGQH++L+ + ++A AA EG VLE+GPG G LT LL + A V+A+E D+
Sbjct: 19 RKSLGQHFLLDPAVCARIATIAAPLEGRHVLEVGPGPGGLTRALLASPAEHVVAVELDRR 78
Query: 175 MVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ + E A +L V++ D +K LSL +G +VVAN+P+N+ T +
Sbjct: 79 AIAALAELSDAFPGRLTVVEGDAMKVDT----LSLL-----PAGPRRVVANLPYNVGTPL 129
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+ L +F + L+ Q+E A R+V
Sbjct: 130 LIGWLKEAALFESLTLMFQQEVAERIV 156
>gi|295692081|ref|YP_003600691.1| dimethyladenosine transferase [Lactobacillus crispatus ST1]
gi|295030187|emb|CBL49666.1| Dimethyladenosine transferase [Lactobacillus crispatus ST1]
Length = 294
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +++ D V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFA-SID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ ID + K+L +D +K + + + F+ K KVVAN+P+
Sbjct: 85 PTILQNELPKKIDDQPLASRFKILLKDVLKANFKEDIGDFFDFTKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L F+ + L++Q+E A RL E + +Y P+ I V
Sbjct: 141 ITTPIIFALAESDLHFTSLTLMMQKEVAERL-EAQPGSKDYGPLTISV 187
>gi|385800663|ref|YP_005837067.1| dimethyladenosine transferase [Halanaerobium praevalens DSM 2228]
gi|309390027|gb|ADO77907.1| dimethyladenosine transferase [Halanaerobium praevalens DSM 2228]
Length = 297
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 100/179 (55%), Gaps = 7/179 (3%)
Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
T K LN +KSLGQ+++++ I + ++++AA++ + ++EIGPG GSLT +LN
Sbjct: 10 VTKKILNKYNLNLKKSLGQNFLVDQNIIEIISSSAAIKGDEFIIEIGPGIGSLTQSILNK 69
Query: 163 GAT--VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
T +LA+EKD MV ++ + FA ++L ++ +D +K + E+ K
Sbjct: 70 LKTGNLLAVEKDAAMVEVLNDIFAEENKLTLINQDALKI----DWPEILEKYNPEKKKVK 125
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
++AN+P+ ++T +I +L +V ++Q+E R+ T ++ +++ V +Y
Sbjct: 126 LLANLPYYVTTPIIMGVLESEIELENMVFMVQKEVGERIC-AGPETKKFGSLSVAVQYY 183
>gi|182415366|ref|YP_001820432.1| ribosomal RNA adenine methylase transferase [Opitutus terrae
PB90-1]
gi|254807877|sp|B1ZW80.1|RSMA_OPITP RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|177842580|gb|ACB76832.1| ribosomal RNA adenine methylase transferase [Opitutus terrae
PB90-1]
Length = 277
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%), Gaps = 14/162 (8%)
Query: 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
AT + L G P++ LGQ+++++ I + A V+ GD V+EIGPG G+LT LL A
Sbjct: 7 ATRELLAQLGHQPKRFLGQNFLVDGNIVRKSLELAQVRRGDAVVEIGPGLGTLTGALLEA 66
Query: 163 GATVLAIEKDQ----HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218
GA V A+EKD+ H+ ++ R D +L+ D V+ H L+ + + +
Sbjct: 67 GAEVWAVEKDRTLHAHLSSTLQPRHP--DTFHLLEADAVE-----HPLA--DLPAAHAAA 117
Query: 219 AKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
K+VAN+P+ I+T + +L G + +VL+LQ+E A R V
Sbjct: 118 FKIVANLPYAIATPWLDAVL-GGPLPERMVLMLQQEAAQRYV 158
>gi|429329661|gb|AFZ81420.1| dimethyladenosine transferase, putative [Babesia equi]
Length = 467
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 76/146 (52%), Gaps = 16/146 (10%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQH + N I D++ AA ++ D VLEIGPGTG+LT L+ V+AI+ D MV
Sbjct: 154 KKFGQHMLKNPGILDKIVQAAEIRPSDTVLEIGPGTGNLTVRLVPLARKVIAIDIDSRMV 213
Query: 177 GLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
G V++R + + L+VL+ D + R F AN+P+ IS+ +
Sbjct: 214 GEVKKRCIQLGYNNLEVLEGDAL--------------RMKFPKFDVCTANLPYQISSPFV 259
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV 260
+LL +F VL+ Q E A RL+
Sbjct: 260 FKLLSHRPLFRCAVLMFQREFAERLL 285
>gi|237804701|ref|YP_002888855.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT]
gi|231273001|emb|CAX09913.1| dimethyladenosine transferase [Chlamydia trachomatis B/TZ1A828/OT]
Length = 277
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 107/189 (56%), Gaps = 18/189 (9%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD + E S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDP----MFEE---SLSQLPMDIEITDAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYSS 165
Query: 272 INIFVNFYS 280
+ +F++F++
Sbjct: 166 LTVFLSFFA 174
>gi|304438548|ref|ZP_07398487.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368386|gb|EFM22072.1| dimethyladenosine transferase [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 292
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 11/166 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ + + AA + D VLEIGPG G+LT L +GA ++A+E D+ +
Sbjct: 27 KWLGQNFLVDAGVVRAIVDAADLSRSDTVLEIGPGIGTLTQGLAESGARIVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHI-RSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
++ E D + V+ D +K I R L ER KVVAN+P+ I+T ++
Sbjct: 87 AVLAETLKGYDNVTVVPGDILKLDILRILNLGAGER-------FKVVANLPYYITTPILM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V ++Q+E A+R+ P + +Y ++I V +Y+
Sbjct: 140 ALLEQHLPIERMVTMVQKEVAVRMTARPG--SKDYGALSIAVQYYT 183
>gi|169824244|ref|YP_001691855.1| dimethyladenosine transferase [Finegoldia magna ATCC 29328]
gi|167831049|dbj|BAG07965.1| dimethyladenosine transferase [Finegoldia magna ATCC 29328]
Length = 283
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 90/160 (56%), Gaps = 9/160 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + + + + E D V+EIGPG G+LT L++ + +IE D ++
Sbjct: 24 KSLGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFGTLTERLVDKCKFLYSIEIDSRLM 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++ + K++ ED +K + L E F KVVAN+P+ I+T +I+
Sbjct: 84 DVLKYTVGDRENFKIINEDVLK-------VDLNELNHEDKKF-KVVANLPYYITTPIIEH 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
L DI + +++Q+E A R+V + + +Y +++FV
Sbjct: 136 LFNYRDIIESITVMVQKEVANRMV-ADVGSKDYASLSLFV 174
>gi|336394517|ref|ZP_08575916.1| dimethyladenosine transferase [Lactobacillus farciminis KCTC 3681]
Length = 293
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 9/163 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ N ++ D + A+ ++ +I +EIGPG G+LT L V A E D ++
Sbjct: 26 KKSLGQNFLTNEKVLDDIVDASGLKSDEIAIEIGPGIGALTEKLAQVAEKVFAFEIDDNL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNISTDVI 234
+ ++ + D ++V+ +D +K L F + G KVVAN+P+ I+T ++
Sbjct: 86 IPVLADTLQYYDNIEVINQDILKVD-----LDEFVKEHGLEGKTIKVVANLPYYITTPIM 140
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFV 276
L+ F +VL++Q+E A R+ +P R EY + I V
Sbjct: 141 LNLINSDYPFQSLVLMMQKEVAQRITAKPGHR--EYGSLTIAV 181
>gi|114319429|ref|YP_741112.1| dimethyladenosine transferase [Alkalilimnicola ehrlichii MLHE-1]
gi|114225823|gb|ABI55622.1| dimethyladenosine transferase [Alkalilimnicola ehrlichii MLHE-1]
Length = 274
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLA 168
N + PRK GQ+++ + + ++ A + GD ++EIGPG G+LT LL A + A
Sbjct: 3 NHRRHRPRKRFGQNFLHDPTLISRMVKAIRPRPGDPLVEIGPGEGALTLPLLRAAGRLTA 62
Query: 169 IEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+E D+ +V ++ R + +L V Q D ++ R + + +VV N+P+N
Sbjct: 63 VELDRDLVAPLQARARTAGELTVHQADALRFDFR-------QLAPAPPARLRVVGNLPYN 115
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPS 263
IST ++ LL D+ ++ LQ+E RL P
Sbjct: 116 ISTPLLFHLLESADVIQDMHFTLQKEVVERLAAPP 150
>gi|349685592|ref|ZP_08896734.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Gluconacetobacter oboediens 174Bp2]
Length = 283
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 85/146 (58%), Gaps = 12/146 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQH 174
RK+LGQH++L+ I ++A+ A G V+E+GPG G LT LL+ A+++A+E D
Sbjct: 25 RKALGQHFLLDPGITARIASLAGNLSGQHVVEVGPGPGGLTRALLDTDAASIVAVEVDTR 84
Query: 175 MVGLVRERFA-SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
V ++ E A + D+L+V++ D ++C + + L R +V+AN+P+N+ T +
Sbjct: 85 AVAVITELAAHAPDRLQVIEADAMRCDLTT--LCPAPR--------QVIANLPYNVGTPL 134
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL 259
+ L +S + L+ Q+E A R+
Sbjct: 135 LVGWLRQAAEWSRLTLMFQQEVAERI 160
>gi|15612620|ref|NP_240923.1| dimethyladenosine transferase [Bacillus halodurans C-125]
gi|27151607|sp|Q9KGK4.1|RSMA_BACHD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|10172669|dbj|BAB03776.1| dimethyladenosine transferase [Bacillus halodurans C-125]
Length = 289
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 91/166 (54%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ + + A++ +EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDPNVLRNIVDVASLTPQSGAIEIGPGIGALTEQLARQAKRVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++RE A + + V+ ED +K ++ + + FE + VVAN+P+ ++T ++
Sbjct: 83 IPVLRETLAPYENVTVINEDVLKADVKQVIATTFEEGQD----LMVVANLPYYVTTPILM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V+++Q E A R+ +P T EY ++I +Y+
Sbjct: 139 KLLEAKLPVRGIVVMIQAEVADRIAAKPG--TKEYGSLSIAAQYYA 182
>gi|114768929|ref|ZP_01446555.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2255]
gi|114549846|gb|EAU52727.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2255]
Length = 280
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 89/152 (58%), Gaps = 19/152 (12%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQH 174
+KSLGQ+++L+ + +++A A VLEIGPG G LT LLN+GA VLAIE+D+
Sbjct: 24 KKSLGQNFLLDLNLTNKIARMAGDLTNHTVLEIGPGPGGLTRALLNSGAKKVLAIERDER 83
Query: 175 MV---GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
++ ++E F ++L+V D + +I +++ +G KVVAN+P+NI T
Sbjct: 84 LIPALNQIKEHFD--NRLEVKYTDALNENIEAYL----------NGPVKVVANLPYNIGT 131
Query: 232 D-VIKQLLP--MGDIFSEVVLLLQEETALRLV 260
+ +++ L P + + L+ Q+E A R+V
Sbjct: 132 ELLVRWLTPSEWPPYWESLTLMFQKEVAKRIV 163
>gi|406880403|gb|EKD28767.1| dimethyladenosine transferase [uncultured bacterium]
Length = 282
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 10/156 (6%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L +KG + K GQ+++L+ I + + A + + D ++EIG G G LT LL GA V+
Sbjct: 20 LETKGIYLTKLRGQNFLLDENILNSIVKTANISKEDTIVEIGTGFGFLTAYLLETGAKVI 79
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
+ E D+ + + + + LK++ +DF +RS + L G +VVANIP+
Sbjct: 80 SFEIDKKVYEIAGDLLKNFHNLKLIHQDF----MRSDITQL------CDGVFRVVANIPY 129
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPS 263
NI++ ++ +L + S++ LL+Q+E R+V +
Sbjct: 130 NIASQILIKLWYNKEKVSDIYLLVQKEFGQRIVSKT 165
>gi|429334667|ref|ZP_19215321.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas putida CSV86]
gi|428760738|gb|EKX82998.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas putida CSV86]
Length = 268
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ A + G+ +LEIGPG G+LT +L +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRAINAKAGEHILEIGPGQGALTEGVLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FAS D ++ Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 VPILNQQFASRDNFRLHQGDALKFD--------FTTLGAAPRSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL ++ ++ +LQ+E RL
Sbjct: 122 HLLDNAELIRDMHFMLQKEVVERL 145
>gi|312898803|ref|ZP_07758191.1| dimethyladenosine transferase [Megasphaera micronuciformis F0359]
gi|310619965|gb|EFQ03537.1| dimethyladenosine transferase [Megasphaera micronuciformis F0359]
Length = 285
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 12/165 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQ++++ ++ +A AA + EGD VLEIGPG G+LT L A+V A+E D ++
Sbjct: 26 KKWGQNFLIRPDVVKNIAIAADIGEGDEVLEIGPGIGTLTQALAETKASVTAVEIDDRLL 85
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + + ++++ D +K I M + F V AN+P+ I+T +I +
Sbjct: 86 PILDKTLEDYENVRIIHGDILKIDINKEM--------NERSFT-VCANLPYYITTPIIMR 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL ++V+++Q+E A R+ +P R Y +++ V +Y+
Sbjct: 137 LLEERLPIRKMVVMVQKEVAERMTAKPGSRI--YGALSVAVQYYT 179
>gi|72389977|ref|XP_845283.1| ribosomal RNA adenine dimethylase family protein, conserved
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359277|gb|AAX79719.1| ribosomal RNA adenine dimethylase family protein, conserved
[Trypanosoma brucei]
gi|70801818|gb|AAZ11724.1| ribosomal RNA adenine dimethylase family protein, conserved
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 344
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 12/143 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQH + N + + AAV+ DIVLEIGPGTG+LT LL A V+A E D MV
Sbjct: 64 KGFGQHILKNPLVIAAIVEKAAVKPTDIVLEIGPGTGNLTEKLLQAAKKVIAFEVDPRMV 123
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+ +RF + LQ ++ + H F+ K VAN+P+ IS+ ++ +
Sbjct: 124 AELNKRFQNSPLAPKLQ--VIRGNCLDHEFPYFD---------KCVANVPYAISSALVFK 172
Query: 237 LLPMGDIFSEVVLLLQEETALRL 259
LL + F VL+ Q E ALR+
Sbjct: 173 LLKRPN-FKCAVLMFQREFALRV 194
>gi|332982498|ref|YP_004463939.1| dimethyladenosine transferase [Mahella australiensis 50-1 BON]
gi|332700176|gb|AEE97117.1| dimethyladenosine transferase [Mahella australiensis 50-1 BON]
Length = 299
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 102/191 (53%), Gaps = 11/191 (5%)
Query: 95 RSQDDDYHATIKALNSKGRF-PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
+++D + ++ L + F P K++GQ++++N E + + A + D VLEIGPG G
Sbjct: 3 KTKDLSSKSAVQRLIDRYNFKPNKAMGQNFLINKEALNAIVNGADISAEDEVLEIGPGLG 62
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+LT L A V A+E D+ ++ L+++ + + +++ DF+ + + +
Sbjct: 63 TLTLKLSERAAHVTAVEVDKRIIPLLKQTLQDVGNVSIIEGDFLNPMVAEEIKECLAGKS 122
Query: 214 SSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTS----E 268
A VVAN+P+ I+T V+ ++ + VL++Q+E A R+V +P R S +
Sbjct: 123 -----AIVVANLPYYITTPVLMDIIENYIMIKRAVLMMQKEVAYRVVAQPGSRLSGSVKD 177
Query: 269 YRPINIFVNFY 279
Y ++I V +Y
Sbjct: 178 YGVLSISVQYY 188
>gi|172037411|ref|YP_001803912.1| dimethyladenosine transferase [Cyanothece sp. ATCC 51142]
gi|354553707|ref|ZP_08973013.1| dimethyladenosine transferase [Cyanothece sp. ATCC 51472]
gi|254807863|sp|B1WRJ7.1|RSMA_CYAA5 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|171698865|gb|ACB51846.1| rRNA dimethyladenosine transferase [Cyanothece sp. ATCC 51142]
gi|353554424|gb|EHC23814.1| dimethyladenosine transferase [Cyanothece sp. ATCC 51472]
Length = 270
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 82/151 (54%), Gaps = 9/151 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + +Q+ AA +++ D +LEIGPGTG LT LL +++A+E D
Sbjct: 4 PRKRFAQHWLRSETALEQIIQAANLKKSDRLLEIGPGTGILTRRLLPLVQSLIAVELDWD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + D +LQ D +K I + ++ KVVANIP+NI++ ++
Sbjct: 64 LCKKLVKSLGDEDNFLLLQGDILKLDIATEA----QQFPKFLPINKVVANIPYNITSPIL 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV 260
+LL P + +VLL+Q+E A R++
Sbjct: 120 DKLLGRISSPKQPSYDLIVLLIQKEVAQRII 150
>gi|148989985|ref|ZP_01821260.1| dimethyladenosine transferase [Streptococcus pneumoniae SP6-BS73]
gi|147924645|gb|EDK75731.1| dimethyladenosine transferase [Streptococcus pneumoniae SP6-BS73]
Length = 252
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 17/157 (10%)
Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF 183
M +EI+DQ+ V+EIGPG G+LT L A V+A E D +V ++ +
Sbjct: 1 MDTAEIDDQVN----------VIEIGPGIGALTEFLAERAAQVMAFEIDHRLVPILADTL 50
Query: 184 ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI 243
D + V+ ED +K + H+ + K+ + KVVAN+P+ I+T ++ L+ G
Sbjct: 51 RDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPIKVVANLPYYITTPILMHLIESGIP 106
Query: 244 FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
FSE V+++Q+E A R+ +P+ T Y ++I V +Y
Sbjct: 107 FSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQYY 141
>gi|16329260|ref|NP_439988.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
gi|383320999|ref|YP_005381852.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383324169|ref|YP_005385022.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383490053|ref|YP_005407729.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384435319|ref|YP_005650043.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
gi|451813419|ref|YP_007449871.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
gi|27151564|sp|P72666.1|RSMA_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|1651740|dbj|BAA16668.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
gi|339272351|dbj|BAK48838.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
gi|359270318|dbj|BAL27837.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359273489|dbj|BAL31007.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359276659|dbj|BAL34176.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407957129|dbj|BAM50369.1| dimethyladenosine transferase [Bacillus subtilis BEST7613]
gi|451779388|gb|AGF50357.1| dimethyladenosine transferase [Synechocystis sp. PCC 6803]
Length = 284
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 18/163 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEG--------DIVLEIGPGTGSLTNVLLNAGATV 166
PRK GQH++ + + AAA +Q G D +LEIGPG G LT LL G V
Sbjct: 5 PRKRFGQHWLNHEPTLQAIVAAADIQSGAPQSGSLRDRLLEIGPGMGVLTKQLLATGNPV 64
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
+A+E D+ + +R++ + +L+ D + + +L + S KVVANIP
Sbjct: 65 VAVELDRDLCLKLRKKLGQRENFLLLEGDVLILDLN----ALLQDFPQFSPLNKVVANIP 120
Query: 227 FNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLV-EPS 263
+NI++ +++ LL P F +VLL+Q+E A RL +PS
Sbjct: 121 YNITSPILELLLGTIQKPRVPGFETIVLLVQKEIAERLTAQPS 163
>gi|18311499|ref|NP_563433.1| dimethyladenosine transferase [Clostridium perfringens str. 13]
gi|110799025|ref|YP_697204.1| dimethyladenosine transferase [Clostridium perfringens ATCC 13124]
gi|110801894|ref|YP_699773.1| dimethyladenosine transferase [Clostridium perfringens SM101]
gi|168213441|ref|ZP_02639066.1| dimethyladenosine transferase [Clostridium perfringens CPE str.
F4969]
gi|169343266|ref|ZP_02864277.1| dimethyladenosine transferase [Clostridium perfringens C str.
JGS1495]
gi|182624345|ref|ZP_02952130.1| dimethyladenosine transferase [Clostridium perfringens D str.
JGS1721]
gi|422347582|ref|ZP_16428493.1| ribosomal RNA small subunit methyltransferase A [Clostridium
perfringens WAL-14572]
gi|422875462|ref|ZP_16921947.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium perfringens F262]
gi|27151580|sp|Q8XHG8.1|RSMA_CLOPE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|118600857|sp|Q0TMD6.1|RSMA_CLOP1 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|118600859|sp|Q0SQ34.1|RSMA_CLOPS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|18146183|dbj|BAB82223.1| dimethyladenosine transferase [Clostridium perfringens str. 13]
gi|110673672|gb|ABG82659.1| dimethyladenosine transferase [Clostridium perfringens ATCC 13124]
gi|110682395|gb|ABG85765.1| dimethyladenosine transferase [Clostridium perfringens SM101]
gi|169298564|gb|EDS80645.1| dimethyladenosine transferase [Clostridium perfringens C str.
JGS1495]
gi|170715038|gb|EDT27220.1| dimethyladenosine transferase [Clostridium perfringens CPE str.
F4969]
gi|177910563|gb|EDT72936.1| dimethyladenosine transferase [Clostridium perfringens D str.
JGS1721]
gi|373223852|gb|EHP46196.1| ribosomal RNA small subunit methyltransferase A [Clostridium
perfringens WAL-14572]
gi|380303520|gb|EIA15822.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Clostridium perfringens F262]
Length = 285
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 87/164 (53%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + A V E D+V+EIGPG G+LT LL V+AIE D ++
Sbjct: 24 KSLGQNFLIDDSVPRDIVNGADVCEDDLVIEIGPGVGTLTVQLLKRAKRVVAIELDSSLI 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + +++ D +K F K+VAN+P+ ++T +I
Sbjct: 84 PILTAELGDNPKFQLIHNDALKVD--------FNEIIGDEKSVKLVANLPYYVTTPIIVN 135
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL G F + +++Q+E A R+ EP+ + +Y ++I V +Y
Sbjct: 136 LLKGGYNFKSLTIMIQKEVAERMNAEPNCK--DYGALSILVQYY 177
>gi|253576891|ref|ZP_04854216.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786
str. D14]
gi|251843758|gb|EES71781.1| dimethyladenosine transferase [Paenibacillus sp. oral taxon 786
str. D14]
Length = 298
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AAA +++ LEIGPG G+LT L V A+E DQ +
Sbjct: 25 KKSLGQNFLIDQNILGKIVAAAELEKTQGALEIGPGIGALTEKLAQEAGKVAAVEIDQRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++E + V+ D +K ++ +LF S VVAN+P+ ++T ++
Sbjct: 85 LPILQEVLEPYPHVHVIHGDVLKLDLK----ALFAAEFSGVSGVSVVANLPYYVTTPIMM 140
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+LL +V+++Q+E A R+ + +Y ++I V +YS
Sbjct: 141 KLLEEKLPLKHIVVMIQKEVAERMAA-TPGGKDYGSLSIAVQYYS 184
>gi|158521647|ref|YP_001529517.1| dimethyladenosine transferase [Desulfococcus oleovorans Hxd3]
gi|226729778|sp|A9A0E0.1|RSMA_DESOH RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|158510473|gb|ABW67440.1| dimethyladenosine transferase [Desulfococcus oleovorans Hxd3]
Length = 289
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSLGQ+++ + + + + + + D+V+E+GPGTG+LT A V AIE D
Sbjct: 15 PKKSLGQNFLCDPQAAEMIVRKCGLSKADVVVEVGPGTGALTIPAAGQAAWVYAIETDGR 74
Query: 175 MVGLVRE--RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
++ ++E R A +D + VL D +K IR E + + V+ N+P+ IS+
Sbjct: 75 LIEPLKETVRAAGLDNVTVLHRDIMKTDIR-------EICREAGRKLVVLGNLPYYISSQ 127
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
++ L+ + VL+ Q+E A R+ P EY I++ + +
Sbjct: 128 ILMDLVEKREAVDRAVLMFQQELARRIAAPP-GNREYGRISVALRY 172
>gi|395243320|ref|ZP_10420307.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
hominis CRBIP 24.179]
gi|394484550|emb|CCI81315.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
hominis CRBIP 24.179]
Length = 294
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 93/169 (55%), Gaps = 14/169 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q+ D V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLNTIKAIVQAADIQKDDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFA------SIDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ ++DQ K++ +D +K + + + + K+VAN+P+
Sbjct: 85 PEILHNELPQTIGGQALDQRFKLVMKDVLKANFQEDAGNFLDLNNP----VKIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFV 276
I+T +I L+ F + L++Q+E A RL +P +T Y P+ + V
Sbjct: 141 ITTPIIFDLIKSDLNFVSLTLMMQKEVAQRLSAKP--KTKAYGPLTLAV 187
>gi|237756245|ref|ZP_04584806.1| dimethyladenosine transferase [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691603|gb|EEP60650.1| dimethyladenosine transferase [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 258
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 90/163 (55%), Gaps = 10/163 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLT-NVLLNAGATVLAIEKDQ 173
P+K LGQH++++ + +++ + + DI++EIGPGTG+LT +LL + A+E D
Sbjct: 6 PKKHLGQHFLISKNVIEKIVDEIDISQEDIIVEIGPGTGALTEEILLRNPKILYAVEIDT 65
Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ ++ E+F+ K+++ DF ++ + S K+V N+P+N+S+ +
Sbjct: 66 TVYPVLEEKFSKYSNFKLIKSDFFDVNLYELI--------SDKEKIKLVGNLPYNVSSLM 117
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I DI V ++Q+E A +L+ +T +Y +++F+
Sbjct: 118 IIDCGFKLDILEFCVFMIQKEVAEKLIAKP-KTKDYTFLSVFI 159
>gi|227894433|ref|ZP_04012238.1| dimethyladenosine transferase [Lactobacillus ultunensis DSM 16047]
gi|227863803|gb|EEJ71224.1| dimethyladenosine transferase [Lactobacillus ultunensis DSM 16047]
Length = 294
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQNAILGIVEAANIQSGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFA-SID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ ID + K+ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PEILHNELPKKIDGEPLEARFKLTLKDVLKANFEKDLTGFFDMGKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L F+ + L++Q+E A RL E EY P+ I V
Sbjct: 141 ITTPIIFVLAESDLHFTSLTLMMQKEVAERL-EAKPGNKEYGPLTISV 187
>gi|290891124|ref|ZP_06554186.1| hypothetical protein AWRIB429_1576 [Oenococcus oeni AWRIB429]
gi|419758303|ref|ZP_14284620.1| dimethyladenosine transferase [Oenococcus oeni AWRIB304]
gi|419856510|ref|ZP_14379231.1| dimethyladenosine transferase [Oenococcus oeni AWRIB202]
gi|419859330|ref|ZP_14381985.1| dimethyladenosine transferase [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|421184694|ref|ZP_15642110.1| dimethyladenosine transferase [Oenococcus oeni AWRIB318]
gi|421188279|ref|ZP_15645618.1| dimethyladenosine transferase [Oenococcus oeni AWRIB419]
gi|421192703|ref|ZP_15649956.1| dimethyladenosine transferase [Oenococcus oeni AWRIB553]
gi|421195017|ref|ZP_15652229.1| dimethyladenosine transferase [Oenococcus oeni AWRIB568]
gi|421196887|ref|ZP_15654068.1| dimethyladenosine transferase [Oenococcus oeni AWRIB576]
gi|290479088|gb|EFD87750.1| hypothetical protein AWRIB429_1576 [Oenococcus oeni AWRIB429]
gi|399904925|gb|EJN92376.1| dimethyladenosine transferase [Oenococcus oeni AWRIB304]
gi|399965836|gb|EJO00402.1| dimethyladenosine transferase [Oenococcus oeni AWRIB419]
gi|399966296|gb|EJO00845.1| dimethyladenosine transferase [Oenococcus oeni AWRIB318]
gi|399974281|gb|EJO08444.1| dimethyladenosine transferase [Oenococcus oeni AWRIB553]
gi|399976206|gb|EJO10232.1| dimethyladenosine transferase [Oenococcus oeni AWRIB576]
gi|399976801|gb|EJO10814.1| dimethyladenosine transferase [Oenococcus oeni AWRIB568]
gi|410496879|gb|EKP88358.1| dimethyladenosine transferase [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|410499555|gb|EKP90986.1| dimethyladenosine transferase [Oenococcus oeni AWRIB202]
Length = 292
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 9/152 (5%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN K LGQ+++++ + ++ AA+ D V+EIGPG GSLT L A V+
Sbjct: 17 LNEYDLHASKRLGQNFLIDLNVLQEIVQGAAIGPDDTVIEIGPGIGSLTEQLAKAAKQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D+ ++ ++ E +K++ D +K S+F + +S K+VAN+P+
Sbjct: 77 AYEIDKKLIPILSETLRPYKNVKIVNRDILKAD-----FSIFAKNQS----LKIVANLPY 127
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
I+T ++ LL F V +++Q+E A RL
Sbjct: 128 YITTPILFYLLNSSLNFKSVTVMMQKEVAARL 159
>gi|421505663|ref|ZP_15952598.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas mendocina DLHK]
gi|400343360|gb|EJO91735.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas mendocina DLHK]
Length = 269
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ A +EG+ +LEIGPG G++T LL +GA + IE D +
Sbjct: 9 RKRFGQNFLHDAGVIDRILRAIRAKEGERLLEIGPGQGAITEGLLGSGAQLDVIELDLDL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++ +F + ++ Q D +K F R +++ G +VV N+P+NIST +I
Sbjct: 69 IPILQGKFGDNPRFRLNQGDALKFD--------FARLEAAPGSLRVVGNLPYNISTPLIF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL + ++ +LQ+E R+
Sbjct: 121 HLLDNAPLIRDMHFMLQKEVVERM 144
>gi|323701639|ref|ZP_08113311.1| dimethyladenosine transferase [Desulfotomaculum nigrificans DSM
574]
gi|323533412|gb|EGB23279.1| dimethyladenosine transferase [Desulfotomaculum nigrificans DSM
574]
Length = 296
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK+LGQ++++++ I D++ AA + E D+ EIGPG G LT L VLA+E DQ++
Sbjct: 22 RKALGQNFLMDANIIDKIVRAANLSENDLAFEIGPGLGVLTRRLAQEAGRVLAVEIDQNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNISTDVI 234
+ ++ E A + + +V+Q D K + + G A K+VAN+P+ I+T ++
Sbjct: 82 LPILNETLADLPKAEVIQADARKVDFDQLAAERTQGQFGPGGKAYKLVANLPYYITTPLL 141
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
LL G +V+++Q+E A RL + S +Y +++ V +Y+
Sbjct: 142 LHLLTSGFNLELLVVMIQKEVADRL-QASPGGKDYGSLSVVVQYYT 186
>gi|398844539|ref|ZP_10601601.1| dimethyladenosine transferase [Pseudomonas sp. GM84]
gi|398254476|gb|EJN39571.1| dimethyladenosine transferase [Pseudomonas sp. GM84]
Length = 266
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I D++ A + G+ +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++ +FA D ++ Q D +K F + + KVV N+P+NIST +I
Sbjct: 70 VPILQHKFAGRDNFRLHQGDALKFD--------FNQLGVPARSLKVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL + ++ +LQ+E R+
Sbjct: 122 HLLSHAGLIRDMHFMLQKEVVERM 145
>gi|170723958|ref|YP_001751646.1| dimethyladenosine transferase [Pseudomonas putida W619]
gi|169761961|gb|ACA75277.1| dimethyladenosine transferase [Pseudomonas putida W619]
Length = 266
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I D++ A + G+ +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++ +FA D ++ Q D +K F + + KVV N+P+NIST +I
Sbjct: 70 VPILQHKFAGRDNFRLHQGDALKFD--------FNQLGVPARSLKVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL + ++ +LQ+E R+
Sbjct: 122 HLLSHAGLIRDMHFMLQKEVVERM 145
>gi|116333120|ref|YP_794647.1| dimethyladenosine transferase [Lactobacillus brevis ATCC 367]
gi|122270191|sp|Q03T56.1|RSMA_LACBA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|116098467|gb|ABJ63616.1| dimethyladenosine transferase [Lactobacillus brevis ATCC 367]
Length = 296
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 6/165 (3%)
Query: 103 ATIKALNSKGRF-PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
A KA+ ++ R +KSLGQ+++ + I + AA V + D V+EIGPG G+LT +
Sbjct: 12 ARTKAILNRYRLVAKKSLGQNFLSDLNILRNIVAAGDVNDHDNVIEIGPGIGALTEQIAK 71
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V+A E D++++ ++ E +K++ ED +K ++ + + FE + K+
Sbjct: 72 RAHKVVAFEIDENLLPVLDETLMDYKNVKIINEDILKANLPAVVADEFEADRP----LKL 127
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLR 265
VAN+P+ I+T ++ +L F +V+++Q E A RLV EP +
Sbjct: 128 VANLPYYITTPILMGVLQSTVRFEAIVVMMQAEVAERLVAEPGTK 172
>gi|347726994|gb|AEP19855.1| dimethyladenosine transferase [Exiguobacterium sp. EPVM]
Length = 292
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 94/168 (55%), Gaps = 9/168 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ AA + E VLEIGPG GSLT V+A+E DQ +
Sbjct: 22 KKSLGQNFLIDLNILNKIVDAAELGEASGVLEIGPGIGSLTEQSAKRAKKVVALEIDQRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++ + + + V+ D ++ IR + ER S G VVAN+P+ ++T +
Sbjct: 82 LPILEDTMSPYPHVHVIHGDALELDIR----DIVEREFFSQGIEDISVVANLPYYVTTPI 137
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
I +LL F +V+++Q+E A R+ +P T Y ++I + +Y+
Sbjct: 138 IMRLLESQIKFRSLVMMIQKEVAERIGAKPG--TKAYGSLSIAIQYYA 183
>gi|422420775|ref|ZP_16497728.1| dimethyladenosine transferase, partial [Listeria seeligeri FSL
S4-171]
gi|313639861|gb|EFS04574.1| dimethyladenosine transferase [Listeria seeligeri FSL S4-171]
Length = 284
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + +KV+ D +K + + S F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNVKVVHGDVLKADVEEVIASQFTKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFY 182
>gi|15605077|ref|NP_219862.1| dimethyladenosine transferase [Chlamydia trachomatis D/UW-3/CX]
gi|76789080|ref|YP_328166.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13]
gi|166154566|ref|YP_001654684.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu]
gi|166155441|ref|YP_001653696.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|301335829|ref|ZP_07224073.1| dimethyladenosine transferase [Chlamydia trachomatis L2tet1]
gi|339626024|ref|YP_004717503.1| dimethyladenosine transferase [Chlamydia trachomatis L2c]
gi|385239868|ref|YP_005807710.1| dimethyladenosine transferase [Chlamydia trachomatis G/9768]
gi|385240791|ref|YP_005808632.1| dimethyladenosine transferase [Chlamydia trachomatis G/11222]
gi|385242644|ref|YP_005810483.1| dimethyladenosine transferase [Chlamydia trachomatis G/9301]
gi|385243561|ref|YP_005811407.1| Dimethyladenosine transferase [Chlamydia trachomatis D-EC]
gi|385244441|ref|YP_005812285.1| Dimethyladenosine transferase [Chlamydia trachomatis D-LC]
gi|385246254|ref|YP_005815076.1| dimethyladenosine transferase [Chlamydia trachomatis G/11074]
gi|27151560|sp|O84358.1|RSMA_CHLTR RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|119365015|sp|Q3KM04.1|RSMA_CHLTA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226729770|sp|B0B7S3.1|RSMA_CHLT2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|226729771|sp|B0BBY8.1|RSMA_CHLTB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|3328775|gb|AAC67949.1| Dimethyladenosine Transferase [Chlamydia trachomatis D/UW-3/CX]
gi|76167610|gb|AAX50618.1| dimethyladenosine transferase [Chlamydia trachomatis A/HAR-13]
gi|165930554|emb|CAP04049.1| dimethyladenosine transferase [Chlamydia trachomatis 434/Bu]
gi|165931429|emb|CAP07003.1| dimethyladenosine transferase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|296435873|gb|ADH18047.1| dimethyladenosine transferase [Chlamydia trachomatis G/9768]
gi|296436799|gb|ADH18969.1| dimethyladenosine transferase [Chlamydia trachomatis G/11222]
gi|296437733|gb|ADH19894.1| dimethyladenosine transferase [Chlamydia trachomatis G/11074]
gi|297140232|gb|ADH96990.1| dimethyladenosine transferase [Chlamydia trachomatis G/9301]
gi|297748484|gb|ADI51030.1| Dimethyladenosine transferase [Chlamydia trachomatis D-EC]
gi|297749364|gb|ADI52042.1| Dimethyladenosine transferase [Chlamydia trachomatis D-LC]
gi|339461258|gb|AEJ77761.1| dimethyladenosine transferase [Chlamydia trachomatis L2c]
gi|440525271|emb|CCP50522.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis K/SotonK1]
gi|440526158|emb|CCP51642.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/8200/07]
gi|440528838|emb|CCP54322.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis D/SotonD6]
gi|440535983|emb|CCP61496.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/795]
gi|440536875|emb|CCP62389.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L1/440/LN]
gi|440537765|emb|CCP63279.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L1/1322/p2]
gi|440538655|emb|CCP64169.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L1/115]
gi|440540435|emb|CCP65949.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2/25667R]
gi|440541324|emb|CCP66838.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L3/404/LN]
gi|440542211|emb|CCP67725.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/UCH-2]
gi|440543102|emb|CCP68616.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Canada2]
gi|440543993|emb|CCP69507.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/LST]
gi|440544883|emb|CCP70397.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams1]
gi|440545773|emb|CCP71287.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/CV204]
gi|440914035|emb|CCP90452.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams2]
gi|440914925|emb|CCP91342.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams3]
gi|440915817|emb|CCP92234.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Canada1]
gi|440916711|emb|CCP93128.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams4]
gi|440917601|emb|CCP94018.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L2b/Ams5]
Length = 277
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 107/189 (56%), Gaps = 18/189 (9%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD + E S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDP----MFEE---SLSQLPMDIEITDAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYS 280
+ +F++F++
Sbjct: 166 LTVFLSFFA 174
>gi|154246772|ref|YP_001417730.1| dimethyladenosine transferase [Xanthobacter autotrophicus Py2]
gi|226732642|sp|A7IJ80.1|RSMA_XANP2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|154160857|gb|ABS68073.1| dimethyladenosine transferase [Xanthobacter autotrophicus Py2]
Length = 288
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 99 DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV 158
DD + G +KSLGQ+++L+ + ++A A+ EG V+E+GPG G LT
Sbjct: 5 DDLPPLRDVIRRHGLSAQKSLGQNFLLDLNLTGRIARASGPLEGATVVEVGPGPGGLTRA 64
Query: 159 LLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216
LL GA V+AIE+DQ + + E +L+V+ D +K +R +
Sbjct: 65 LLALGARRVIAIERDQRCLDALAEVSDHYPGRLEVISGDALKVDVRPLV---------GD 115
Query: 217 GFAKVVANIPFNISTDVIKQLL---PMGDIFSEVVLLLQEETALRLV 260
G +VVAN+P+NI+T ++ L P FS + L+ Q+E A R+V
Sbjct: 116 GEVRVVANLPYNIATLLLIGWLSTDPWPPWFSSLTLMFQKEVAERIV 162
>gi|86608465|ref|YP_477227.1| dimethyladenosine transferase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|119365854|sp|Q2JMR8.1|RSMA_SYNJB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|86557007|gb|ABD01964.1| dimethyladenosine transferase [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 282
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 23/156 (14%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGD------IVLEIGPGTGSLTNVLLNAGATVL 167
+PRK GQH++ + +++ + AA + + + VLEIGPGTG LT LL G V+
Sbjct: 3 YPRKRFGQHWLKDPAVHEAILRAAQLNDLERGADPTWVLEIGPGTGQLTRRLLAQGVQVV 62
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D+ + L+R+RFA + +++ DF++ +VANIP+
Sbjct: 63 AVEIDRDLCRLLRKRFADQPRFHLVEGDFLRL-------------PLPPQPRLLVANIPY 109
Query: 228 NISTDVIKQLL--PMGDI--FSEVVLLLQEETALRL 259
N++ +++++L P + F +VLL+Q+E A RL
Sbjct: 110 NLTGSILEKVLGSPAQPVRQFERIVLLVQKELAERL 145
>gi|297587466|ref|ZP_06946110.1| dimethyladenosine transferase [Finegoldia magna ATCC 53516]
gi|297574155|gb|EFH92875.1| dimethyladenosine transferase [Finegoldia magna ATCC 53516]
Length = 283
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 90/160 (56%), Gaps = 9/160 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + + + E D V+EIGPG G+LT L++ + +IE D ++
Sbjct: 24 KALGQNFLIDGNLIENIIDFSDITEDDYVIEIGPGFGTLTERLVDKCKFLYSIEIDSRLM 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++ D +++ ED +K L E + F KVVAN+P+ I+T +I+
Sbjct: 84 DVLKYTVGDRDNFQIINEDVLKV-------DLNELNHGAKKF-KVVANLPYYITTPIIEH 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
L DI + +++Q+E A R+V + + +Y +++FV
Sbjct: 136 LFNYRDIIESITVMIQKEVANRMV-ADVGSKDYASLSLFV 174
>gi|407003278|gb|EKE19877.1| dimethyladenosine transferase [uncultured bacterium]
Length = 267
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 86/144 (59%), Gaps = 2/144 (1%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ ++E+ ++ +A + D+V+E+GPG G+LT +L V+AIE D +
Sbjct: 5 KKSLGQNFLKDAEVLGRIIKSANLSSDDVVVEVGPGQGALTELLAGVCKKVIAIELDDRL 64
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ + +F ++++ +D +K ++ + M + ++S KVVANIP+ I+ +I+
Sbjct: 65 IEPLHTKFVGDKNVEIIHDDILKLNLPALMEKQLKDNNATS--YKVVANIPYYITAPIIR 122
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
L +EV+ ++Q+E A R+
Sbjct: 123 LFLETKIPPTEVMFMVQKEVAERI 146
>gi|289433536|ref|YP_003463408.1| dimethyladenosine transferase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289169780|emb|CBH26316.1| dimethyladenosine transferase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 295
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ + +KV+ D +K + + S F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSAYNNVKVVHGDVLKADVEEVIASQFTKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFY 182
>gi|374703444|ref|ZP_09710314.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. S9]
Length = 273
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + ++ A +E + +LEIGPG G+LT LLN+GA + IE D+ +
Sbjct: 10 RKRFGQNFLHDAGVIHRILRAIHAKEAEHLLEIGPGQGALTEGLLNSGAQLDVIELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++ +F S + ++ Q D +K F+R ++ +VV N+P+NIST +I
Sbjct: 70 IPILQAKFGSQPRFRLNQGDALKFD--------FQRLEAQPRSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL + ++ +LQ+E RL
Sbjct: 122 HLLDNASLIRDMHFMLQKEVVERL 145
>gi|261328672|emb|CBH11650.1| ribosomal RNA adenine dimethylase family protein,conserved,
putative [Trypanosoma brucei gambiense DAL972]
Length = 383
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 12/143 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQH + N + + AAV+ DIVLEIGPGTG+LT LL A V+A E D MV
Sbjct: 103 KGFGQHILKNPLVIAAIVEKAAVKPTDIVLEIGPGTGNLTEKLLQAAKKVIAFEVDPRMV 162
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+ +RF + LQ ++ + H F+ K VAN+P+ IS+ ++ +
Sbjct: 163 AELNKRFQNSPLAPKLQ--VIRGNCLDHEFPYFD---------KCVANVPYAISSALVFK 211
Query: 237 LLPMGDIFSEVVLLLQEETALRL 259
LL + F VL+ Q E ALR+
Sbjct: 212 LLKRPN-FKCAVLMFQREFALRV 233
>gi|225709718|gb|ACO10705.1| Probable dimethyladenosine transferase [Caligus rogercresseyi]
Length = 313
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 17/148 (11%)
Query: 118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVG 177
+LGQH + N I D + + ++ D VLEIGPGTG+LT LL V+ IE D MV
Sbjct: 33 TLGQHILKNPAIVDSIIDKSGLRPTDTVLEIGPGTGNLTAKLLQVVKRVIVIEVDPRMVS 92
Query: 178 LVRERF---ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+++RF +L++L D +K + F VAN+P+ IS+ ++
Sbjct: 93 EIQKRFQHSPHRPKLEILVGDAIKTDL--------------PFFDVCVANVPYQISSPLV 138
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEP 262
+LL F +L+ Q E ALRL+ P
Sbjct: 139 FKLLIHRPFFRAAILMFQREFALRLIAP 166
>gi|222152162|ref|YP_002561322.1| dimethyladenosine transferase [Macrococcus caseolyticus JCSC5402]
gi|254807873|sp|B9E8V8.1|RSMA_MACCJ RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|222121291|dbj|BAH18626.1| dimethyladenosine transferase [Macrococcus caseolyticus JCSC5402]
Length = 296
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 7/178 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L+ G +KSLGQ++++++ + + AA + + V+EIGPG GSLT L
Sbjct: 12 TKQLLDQYGFKFKKSLGQNFLVDTNVIRNIIEAAGIDKTSGVIEIGPGMGSLTEQLAKHA 71
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
VLA E DQ ++ ++ E + D + V+ ED +K + S + + F VVA
Sbjct: 72 KQVLAFEIDQRLIPILGETLSPYDNVTVINEDILKADVASAIETYLHH--CDEIF--VVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
N+P+ I+T ++ LL + V+++Q+E RL PS T Y ++I V +Y+
Sbjct: 128 NLPYYITTPILMGLLEKNLNINSYVVMMQKEVGERLSAIPS--TKAYGSLSIAVQYYT 183
>gi|340751996|ref|ZP_08688806.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium
mortiferum ATCC 9817]
gi|229420963|gb|EEO36010.1| ribosomal RNA small subunit methyltransferase A [Fusobacterium
mortiferum ATCC 9817]
Length = 264
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 86/145 (59%), Gaps = 11/145 (7%)
Query: 116 RKSLGQHYMLNS-EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
+K GQ+++ + E+ ++ + VQ D VLEIGPG G+LT +LL+ V+ +E D+
Sbjct: 6 KKKFGQNFLTDQREVLRKIMEVSNVQAEDTVLEIGPGEGALTALLLDTAKKVVTVEIDRD 65
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++R++F + ++ D ++ +R+++ +G KVVANIP+ I++ +I
Sbjct: 66 LEKILRKKFDGNPKYTLVMNDVLETDLRAYV---------GAG-TKVVANIPYYITSPII 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ D+ E+ +++Q+E A R+
Sbjct: 116 NKLIENRDVIDEIYIMVQKEVAERV 140
>gi|330844811|ref|XP_003294306.1| hypothetical protein DICPUDRAFT_84787 [Dictyostelium purpureum]
gi|325075260|gb|EGC29171.1| hypothetical protein DICPUDRAFT_84787 [Dictyostelium purpureum]
Length = 315
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N I D + A ++ D VLEIGPGTG+LT LL V+A+E D M
Sbjct: 32 KSYGQHLLKNPLIIDSIVEKAQLKSTDTVLEIGPGTGNLTMKLLENCKKVIAVEVDPRMA 91
Query: 177 GLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+++R A+ L+++ DF+K + F VAN+P+ IS+ +
Sbjct: 92 AELQKRVAASPYAQHLQIILGDFLKVDL--------------PYFDVCVANVPYQISSPL 137
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL 259
+LL IF VL+ Q E ALRL
Sbjct: 138 TFKLLAHRPIFRTAVLMFQREFALRL 163
>gi|229917418|ref|YP_002886064.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b]
gi|229468847|gb|ACQ70619.1| dimethyladenosine transferase [Exiguobacterium sp. AT1b]
Length = 292
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 95/168 (56%), Gaps = 9/168 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AA + E VLEIGPG GSLT V+A+E DQ +
Sbjct: 22 KKSLGQNFLIDLNILSKIVGAAELSEVSGVLEIGPGIGSLTEQSAKRAKKVVALEIDQRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++ + + +KV+ D ++ +R + E+ + G VVAN+P+ ++T +
Sbjct: 82 LPILDDTMSPYPHVKVIHGDALELDLR----EIVEQEFLNEGIEDISVVANLPYYVTTPI 137
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
I +LL G F +V+++Q+E A R+ +P T Y ++I + +Y+
Sbjct: 138 IMRLLESGVKFRSLVMMIQKEVAERIGAKPG--TKAYGSLSIAIQYYA 183
>gi|334141530|ref|YP_004534736.1| dimethyladenosine transferase [Novosphingobium sp. PP1Y]
gi|333939560|emb|CCA92918.1| dimethyladenosine transferase [Novosphingobium sp. PP1Y]
Length = 273
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 15/168 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH-M 175
K+LGQ+++ + ++ D++AA EG VLE+GPG G LT LL AGA V AIE D+ +
Sbjct: 20 KALGQNFLFDEQLLDRIAAIPGALEGHNVLEVGPGPGGLTRALLRAGAQVTAIEMDRRCL 79
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L A +LKV++ D +K SLF+ G +VAN+P+N+ T +
Sbjct: 80 PALAEVEQAFPGKLKVIEGDAMKI----APASLFD------GPYHIVANLPYNVGTALFT 129
Query: 236 QLLPMGDI---FSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L + + + L+ QEE A R+V + TS Y + + + S
Sbjct: 130 GWLSGEEWPPQWQSLTLMFQEEVARRIVAEA-NTSAYGRLAVLAQWRS 176
>gi|440539544|emb|CCP65058.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis L1/224]
Length = 277
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 107/189 (56%), Gaps = 18/189 (9%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD + E S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDP----MFEE---SLSQLPMDIEIADAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYS 280
+ +F++F++
Sbjct: 166 LTVFLSFFA 174
>gi|376282360|ref|YP_005156186.1| dimethyladenosine transferase [Chlamydia trachomatis A2497]
gi|385270038|ref|YP_005813198.1| Dimethyladenosine transferase [Chlamydia trachomatis A2497]
gi|347975178|gb|AEP35199.1| Dimethyladenosine transferase [Chlamydia trachomatis A2497]
gi|371908390|emb|CAX09019.1| dimethyladenosine transferase [Chlamydia trachomatis A2497]
gi|438690280|emb|CCP49537.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis A/7249]
gi|438691364|emb|CCP48638.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis A/5291]
gi|438692737|emb|CCP47739.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis A/363]
Length = 277
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 107/189 (56%), Gaps = 18/189 (9%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD + E S+ QL + E C + + SL K
Sbjct: 59 ALSEVLLSQGANVIALEKDP----MFEE---SLSQLPMDIEITDAC--KYPLTSL--EDK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYS 280
+ +F++F++
Sbjct: 166 LTVFLSFFA 174
>gi|302844675|ref|XP_002953877.1| hypothetical protein VOLCADRAFT_106150 [Volvox carteri f.
nagariensis]
gi|300260689|gb|EFJ44906.1| hypothetical protein VOLCADRAFT_106150 [Volvox carteri f.
nagariensis]
Length = 384
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 76/147 (51%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + + A V+ D+VLEIGPGTG+LT LL V+AIE D MV
Sbjct: 37 KSKGQHILKNPLVVQAIVDKAGVKSTDVVLEIGPGTGNLTVKLLEKAKKVIAIELDPRMV 96
Query: 177 GLVRERF---ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ R A + L+++ DF++ + F VANIP+NIS+ +
Sbjct: 97 LELQRRVQGTAYANNLQIIHGDFMRVEL--------------PYFDLCVANIPYNISSPL 142
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL F V++ Q E A+RLV
Sbjct: 143 TFKLLAHRPAFRAAVIMYQHEFAMRLV 169
>gi|81429267|ref|YP_396268.1| dimethyladenosine transferase [Lactobacillus sakei subsp. sakei
23K]
gi|119365029|sp|Q38V22.1|RSMA_LACSS RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|78610910|emb|CAI55962.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N,
N-adenosyl(rRNA) dimethyltransferase) [Lactobacillus
sakei subsp. sakei 23K]
Length = 297
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 5/177 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T K L G +KSLGQ+++ N I Q+ A + + D V+EIGPG GSLT +
Sbjct: 10 TKKILKRYGFKFKKSLGQNFLTNITILKQIVEAGEITKDDDVIEIGPGIGSLTEQIARKA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
VL+ E D ++ ++++ + VL +D ++ + + + F+ + + K+VA
Sbjct: 70 HQVLSFEIDDRLIPVLKDTLNHYHNVTVLNQDILEADLPTLIAKHFDGQHN----LKIVA 125
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T ++ LL G +VL++Q+E A R ++ + + Y ++I V +S
Sbjct: 126 NLPYYITTPIMLHLLEAGLPIDRMVLMMQKEVAER-IDAAPGSKAYGSLSIAVQLHS 181
>gi|255506936|ref|ZP_05382575.1| dimethyladenosine transferase [Chlamydia trachomatis D(s)2923]
gi|385241724|ref|YP_005809564.1| dimethyladenosine transferase [Chlamydia trachomatis E/11023]
gi|385245331|ref|YP_005814154.1| dimethyladenosine transferase [Chlamydia trachomatis E/150]
gi|386262707|ref|YP_005815986.1| dimethyladenosine transferase [Chlamydia trachomatis Sweden2]
gi|389858046|ref|YP_006360288.1| dimethyladenosine transferase [Chlamydia trachomatis F/SW4]
gi|389858922|ref|YP_006361163.1| dimethyladenosine transferase [Chlamydia trachomatis E/SW3]
gi|389859798|ref|YP_006362038.1| dimethyladenosine transferase [Chlamydia trachomatis F/SW5]
gi|289525395|emb|CBJ14872.1| dimethyladenosine transferase [Chlamydia trachomatis Sweden2]
gi|296434947|gb|ADH17125.1| dimethyladenosine transferase [Chlamydia trachomatis E/150]
gi|296438667|gb|ADH20820.1| dimethyladenosine transferase [Chlamydia trachomatis E/11023]
gi|380249118|emb|CCE14410.1| dimethyladenosine transferase [Chlamydia trachomatis F/SW5]
gi|380249993|emb|CCE13521.1| dimethyladenosine transferase [Chlamydia trachomatis F/SW4]
gi|380250871|emb|CCE12632.1| dimethyladenosine transferase [Chlamydia trachomatis E/SW3]
gi|440527056|emb|CCP52540.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis D/SotonD1]
gi|440529730|emb|CCP55214.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis E/SotonE4]
gi|440530629|emb|CCP56113.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis E/SotonE8]
gi|440535097|emb|CCP60607.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Chlamydia trachomatis E/Bour]
Length = 277
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N + + K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVNGRAK---KALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD S+ QL + E C + L+ E K
Sbjct: 59 ALSEVLLSQGANVIALEKDPMFE-------ESLSQLPMDIEITDACE---YPLTSLE-DK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYS 280
+ +F++F++
Sbjct: 166 LTVFLSFFA 174
>gi|399078286|ref|ZP_10752822.1| dimethyladenosine transferase [Caulobacter sp. AP07]
gi|398033861|gb|EJL27146.1| dimethyladenosine transferase [Caulobacter sp. AP07]
Length = 273
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 11/144 (7%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH++L+ I ++A A V EGD V+E+GPG G LT LL GA V+A+E D+ +
Sbjct: 22 KSFGQHFLLDLNITRKIARLAGVGEGDTVIEVGPGPGGLTRALLETGARVVAVEMDRRFL 81
Query: 177 GLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
L+ + + D +L ++Q D +K + + + G A +V+N+P+N+ T ++
Sbjct: 82 PLLEDLAVAADGRLTIVQGDALKVDMAA----------IAGGPAHMVSNLPYNVGTPLLI 131
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
L + L+ Q+E A R+
Sbjct: 132 NWLTGPFRPLSMTLMFQKEVADRI 155
>gi|355678189|ref|ZP_09060868.1| ribosomal RNA small subunit methyltransferase A [Clostridium
citroniae WAL-17108]
gi|354812635|gb|EHE97250.1| ribosomal RNA small subunit methyltransferase A [Clostridium
citroniae WAL-17108]
Length = 288
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ +AA + E D VLEIGPG G++T L V+A+E D ++
Sbjct: 22 QKRFGQNFLIDTHVLDKIISAAGITEQDCVLEIGPGIGTMTQYLAEHARRVVAVEIDSNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + V+ +D +K + + E R KVVAN+P+ I+T +I
Sbjct: 82 LPILDETLKGYTNITVINDDILKVDVGGLVNEYNEGRP-----VKVVANLPYYITTPIIM 136
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P + +Y +++ V +Y+
Sbjct: 137 GLFESDVPIDNITVMVQKEVADRMQVGPG--SKDYGALSLAVQYYA 180
>gi|238928059|ref|ZP_04659819.1| dimethyladenosine transferase [Selenomonas flueggei ATCC 43531]
gi|238884019|gb|EEQ47657.1| dimethyladenosine transferase [Selenomonas flueggei ATCC 43531]
Length = 292
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 94/165 (56%), Gaps = 9/165 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ + + AA + D VLEIGPG G+LT L +GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDAGVVRAIVDAADLSPADTVLEIGPGIGTLTQGLAESGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E D + ++ D +K I +L+L + F KVVAN+P+ I+T ++
Sbjct: 87 AVLAETLKGYDNVAIVPGDILKLDIL-RILNL----GAGEQF-KVVANLPYYITTPILMA 140
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL + +V ++Q+E A+R+ P + +Y ++I V +Y+
Sbjct: 141 LLEQHLPIARMVTMVQKEVAVRMTARPG--SKDYGALSIAVQYYT 183
>gi|316933703|ref|YP_004108685.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1]
gi|315601417|gb|ADU43952.1| dimethyladenosine transferase [Rhodopseudomonas palustris DX-1]
Length = 287
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 16/151 (10%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQH 174
RKSLGQ+++L+ + ++A AA +G V+EIGPG G LT LL GA V+AIE+D+
Sbjct: 22 RKSLGQNFLLDLNLTARIARAAGPLDGVTVVEIGPGPGGLTRALLATGAKRVIAIERDER 81
Query: 175 MVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG-FAKVVANIPFNISTD 232
+G + E A +L+++ D ++ F+ R +G A++VAN+P+NI+T
Sbjct: 82 ALGALEEIAAHYPGRLEIVSGDAME----------FDPRPLLNGERARIVANLPYNIATP 131
Query: 233 VIKQLL---PMGDIFSEVVLLLQEETALRLV 260
++ L P + +VL+ Q E A R+V
Sbjct: 132 LLIGWLCAEPWPPWYEMMVLMFQREVAQRIV 162
>gi|262047261|ref|ZP_06020219.1| dimethyladenosine transferase [Lactobacillus crispatus MV-3A-US]
gi|423319703|ref|ZP_17297578.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
crispatus FB049-03]
gi|423320287|ref|ZP_17298159.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
crispatus FB077-07]
gi|260572506|gb|EEX29068.1| dimethyladenosine transferase [Lactobacillus crispatus MV-3A-US]
gi|405587748|gb|EKB61475.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
crispatus FB049-03]
gi|405607800|gb|EKB80761.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
crispatus FB077-07]
Length = 294
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +++ D V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFA-SID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ ID + K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PTILQNELPKKIDDQPLASRFKLILKDLLKADFKVDISDFFDFTKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L F+ + L++Q+E A RL E + EY P+ I V
Sbjct: 141 ITTPIIFALAESDLHFTSLTLMMQKEVAERL-EAQPGSKEYGPLTISV 187
>gi|224534733|ref|ZP_03675305.1| dimethyladenosine transferase [Borrelia spielmanii A14S]
gi|224513981|gb|EEF84303.1| dimethyladenosine transferase [Borrelia spielmanii A14S]
Length = 274
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+Y++N I ++ + +++ + + EIGPG G++T++LL + A E D
Sbjct: 22 PRKLWGQNYLINESIRQKIIESLDIKKNEKIWEIGPGLGAMTDILLKKTNLLTAFEIDLK 81
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ E+F + K+++ DF K + + K+ +N+P+NI++ VI
Sbjct: 82 YSEILNEKFGKLKNFKLIKGDFFKKY-----------PTENKNIDKIFSNLPYNIASKVI 130
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL 259
+L+ + E+VL +Q+E A R+
Sbjct: 131 SKLIE-ENFLKEMVLTVQKELADRI 154
>gi|429765068|ref|ZP_19297373.1| dimethyladenosine transferase [Clostridium celatum DSM 1785]
gi|429187013|gb|EKY27935.1| dimethyladenosine transferase [Clostridium celatum DSM 1785]
Length = 281
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 87/164 (53%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ + + A V E D+V+EIGPG G+LT LL V+AIE D ++
Sbjct: 21 KSLGQNFLVDDSVPRDIVLGAEVNEEDLVIEIGPGVGTLTVQLLKKAKKVVAIELDNDLI 80
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + ++ D +K + KS K+VAN+P+ ++T +I +
Sbjct: 81 PILTQELGENPNFTLIHNDALKVDFN----EIIGEEKS----VKLVANLPYYVTTPIIVK 132
Query: 237 LLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL G F + +++Q+E A R+ EP +Y +++ V +Y
Sbjct: 133 LLKDGYNFKSLTIMIQKEVAERMNAEPG--NKDYGALSLLVQYY 174
>gi|390951197|ref|YP_006414956.1| dimethyladenosine transferase [Thiocystis violascens DSM 198]
gi|390427766|gb|AFL74831.1| dimethyladenosine transferase [Thiocystis violascens DSM 198]
Length = 276
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 82/146 (56%), Gaps = 8/146 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQ+++ + I +++ + + G+ +LEIGPG G++T LL A T+ +E D+
Sbjct: 5 PRKRFGQNFLHDPAIIERIHSVIGAKPGERLLEIGPGQGAITRGLLTAAGTLDVVELDRD 64
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ +R+R + L++ D +K +R + S ER ++V N+P+NIST ++
Sbjct: 65 LIEPLRQRLGPLGDLRIHNVDALKFDLRD-LASNGER-------LRIVGNLPYNISTPIL 116
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV 260
L D ++ L+LQ+E R+V
Sbjct: 117 FHFLEQSDCILDLHLMLQKEVVDRIV 142
>gi|302821163|ref|XP_002992246.1| hypothetical protein SELMODRAFT_186635 [Selaginella moellendorffii]
gi|300140013|gb|EFJ06743.1| hypothetical protein SELMODRAFT_186635 [Selaginella moellendorffii]
Length = 312
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 76/147 (51%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N I + A ++ DIVLEIGPGTG+LT LL V+A+E D MV
Sbjct: 26 KSRGQHILKNPLIVQSIVQKAGLKSTDIVLEIGPGTGNLTVKLLEVAKKVIAVELDPRMV 85
Query: 177 GLVRERFASIDQ---LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ R Q L+++Q D +K + F VANIP+ IS+ +
Sbjct: 86 LELQRRVQGTPQANHLQIIQGDVLKTEL--------------PYFDVCVANIPYQISSPL 131
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL +F V++ Q+E A+RLV
Sbjct: 132 TFKLLSHRPLFRAAVIMFQKEFAMRLV 158
>gi|312113661|ref|YP_004011257.1| dimethyladenosine transferase [Rhodomicrobium vannielii ATCC 17100]
gi|311218790|gb|ADP70158.1| dimethyladenosine transferase [Rhodomicrobium vannielii ATCC 17100]
Length = 287
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 13/150 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQH 174
RKSLGQ+++L+ + ++A AA G VLEIGPG G LT LL GA+ +AIE+D
Sbjct: 24 RKSLGQNFILDLNVTRRIARAAGPLNGATVLEIGPGPGGLTRALLIEGASGAIAIERD-- 81
Query: 175 MVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
ERF ++DQ+ D + M + + +G ++VAN+P+NI+T +
Sbjct: 82 ------ERFRPALDQIAEASGDRFRVTFADAMGIDYPAFAAETGANRLVANLPYNIATPL 135
Query: 234 IKQLLP---MGDIFSEVVLLLQEETALRLV 260
I L F +V+++Q+E A RLV
Sbjct: 136 IVGWLTEARWPPWFDRIVVMVQKEVAERLV 165
>gi|126725345|ref|ZP_01741187.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2150]
gi|126704549|gb|EBA03640.1| dimethyladenosine transferase [Rhodobacterales bacterium HTCC2150]
Length = 280
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 15/170 (8%)
Query: 96 SQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSL 155
+Q D+ + + G RKSLGQ+++L+ + ++A A G VLEIGPG G L
Sbjct: 2 AQIDNLPPLSDVIETHGLAARKSLGQNFLLDLNLTSKIARQAGDLRGSDVLEIGPGPGGL 61
Query: 156 TNVLLNAGA-TVLAIEKDQHMVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
T LL GA VLAIEKD + + E A +QLK + D ++ + H+ +
Sbjct: 62 TRGLLAEGARRVLAIEKDTRCIAALDEIASAYPNQLKTINGDALEANPLEHLQAPI---- 117
Query: 214 SSSGFAKVVANIPFNISTD-VIKQLLP--MGDIFSEVVLLLQEETALRLV 260
KVVAN+P+N+ T+ +I+ L P + + L+ Q E A R+V
Sbjct: 118 ------KVVANLPYNVGTELLIRWLTPAEWPPFWDSLTLMFQREVAHRIV 161
>gi|417925844|ref|ZP_12569259.1| dimethyladenosine transferase [Finegoldia magna
SY403409CC001050417]
gi|341590769|gb|EGS34000.1| dimethyladenosine transferase [Finegoldia magna
SY403409CC001050417]
Length = 283
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 89/160 (55%), Gaps = 9/160 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + + + E D V+EIGPG G+LT L++ + +IE D ++
Sbjct: 24 KALGQNFLIDGNLIENIIDYSNITEDDYVIEIGPGFGTLTERLVDKCKFLYSIEIDSRLM 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++ D +++ ED +K + E F KVVAN+P+ I+T +I+
Sbjct: 84 DVLKYTVGDRDNFQIINEDVLKVDLN-------ELNHEDKKF-KVVANLPYYITTPIIEH 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
L DI + +++Q+E A R+V + + +Y +++FV
Sbjct: 136 LFNYRDIIESITVMVQKEVANRMV-ADVGSKDYASLSLFV 174
>gi|302380914|ref|ZP_07269376.1| dimethyladenosine transferase [Finegoldia magna ACS-171-V-Col3]
gi|302311292|gb|EFK93311.1| dimethyladenosine transferase [Finegoldia magna ACS-171-V-Col3]
Length = 283
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 90/160 (56%), Gaps = 9/160 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + + + E D V+EIGPG G+LT L++ + +IE D ++
Sbjct: 24 KALGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFGTLTERLVDKCKFLYSIEIDSRLM 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++ + K++ ED +K ++ E F KVVAN+P+ I+T +I+
Sbjct: 84 DVLKYTVGDRENFKIINEDVLKVNLN-------ELNHEDKKF-KVVANLPYYITTPIIEH 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
L DI + +++Q+E A R+V + + +Y +++FV
Sbjct: 136 LFNYRDIIESITVMVQKEVANRMV-ADVGSKDYASLSLFV 174
>gi|347727044|gb|AEP19880.1| dimethyladenosine transferase [Exiguobacterium sp. 11-28]
Length = 292
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 9/168 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I +++ AA + E VLEIGPG GSLT V+A+E DQ +
Sbjct: 22 KKSLGQNFLIDLNILNKIVDAAELGEASGVLEIGPGIGSLTEQSAKRAKKVVALEIDQRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++ + + + V+ D ++ I+ S+ ER S G VVAN+P+ ++T +
Sbjct: 82 LPILEDTMSPYPHVHVIHGDALELDIQ----SIVEREFFSQGIEDISVVANLPYYVTTPI 137
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
I +LL F +V+++Q+E A R+ +P T Y ++I + +Y+
Sbjct: 138 IMRLLESQIKFRSLVMMIQKEVAERIGAKPG--TKAYGSLSIAIQYYA 183
>gi|304405864|ref|ZP_07387522.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9]
gi|304345107|gb|EFM10943.1| dimethyladenosine transferase [Paenibacillus curdlanolyticus YK9]
Length = 303
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 96/166 (57%), Gaps = 9/166 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ AAA + LEIGPG G+LT L + V A+E D +
Sbjct: 33 KKSLGQNFLIDQNILHKIVAAAELDGTKGALEIGPGIGALTQHLARSAGRVTAVEIDNRL 92
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF-ERRKSSSGFAKVVANIPFNISTDVI 234
+ ++R+ A ++V+ D +K ++ LF ER + SG + VVAN+P+ ++T ++
Sbjct: 93 IPILRDTLAGEANVEVVHADVLKLNLH----ELFAERFEGLSGIS-VVANLPYYVTTPIL 147
Query: 235 KQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+LL +V+++Q+E A R+ +P + EY +++ V +Y
Sbjct: 148 MKLLEERLPLEHIVVMIQKEVADRMAAKPGGK--EYGSLSVAVQYY 191
>gi|14520595|ref|NP_126070.1| dimethyladenosine transferase [Pyrococcus abyssi GE5]
gi|27151615|sp|Q9V1P8.1|RSMA_PYRAB RecName: Full=Probable ribosomal RNA small subunit
methyltransferase A; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName:
Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
dimethyltransferase
gi|5457811|emb|CAB49301.1| ksgA dimethyladenosine transferase [Pyrococcus abyssi GE5]
gi|380741122|tpe|CCE69756.1| TPA: dimethyladenosine transferase [Pyrococcus abyssi GE5]
Length = 269
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 80/152 (52%), Gaps = 17/152 (11%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L+ G P +GQH+++ ++ D+ A V + D+VLE+GPG G LT+ L V
Sbjct: 9 LSKYGIRPNDRIGQHFLIVKDVIDKAIEVAEVSKSDVVLEVGPGLGFLTDELSKRAKKVF 68
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
IE D+ ++ ++R + S + ++++Q D VK S F KVV+NIP+
Sbjct: 69 TIELDRRIIEILRNEY-SWNNVEIIQGDAVKVEWPS--------------FNKVVSNIPY 113
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
IS+ +LL M F V++ Q E ALR+
Sbjct: 114 QISSPFTFKLLKME--FERAVVMYQLEFALRM 143
>gi|21673632|ref|NP_661697.1| dimethyladenosine transferase [Chlorobium tepidum TLS]
gi|27151567|sp|Q8KE87.1|RSMA_CHLTE RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|21646748|gb|AAM72039.1| dimethyladenosine transferase [Chlorobium tepidum TLS]
Length = 275
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 82/144 (56%), Gaps = 12/144 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQ+++L+ I ++ + ++EGD V+EIGPG G+LT +L + AIEKD+ +
Sbjct: 14 KKKLGQNFLLDRNIPRKIVRESGIKEGDRVVEIGPGFGALTTAILEVMPSFTAIEKDREL 73
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
RE Q++++++DF+K + ++ G V+ NIP++I++ ++
Sbjct: 74 AKFNREEHP---QIELIEDDFLKVPLEPL---------AAGGKLSVLGNIPYSITSPILF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
+LL + + L++Q E A R+
Sbjct: 122 RLLDNRHLIASATLMIQHEVAQRI 145
>gi|406668942|ref|ZP_11076233.1| dimethyladenosine transferase [Facklamia ignava CCUG 37419]
gi|405585223|gb|EKB59058.1| dimethyladenosine transferase [Facklamia ignava CCUG 37419]
Length = 292
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I ++ AA+ + V+EIGPG G+LT L V A E DQ
Sbjct: 26 KKSLGQNFLMDTNILRKMVTTAALTDQTTVIEIGPGIGALTEFLALHSKQVYAFEIDQRF 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D ++++ D ++ + + ++ + + VVAN+P+ I+T +I
Sbjct: 86 IAILEDTLSDYDNVQIVHRDILEVDFSA---AEYQDLRQAEDLV-VVANLPYYITTPIIM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINI 274
L+ G F ++V+++Q+E A R++ +P +T +Y ++I
Sbjct: 142 GLITSGLPFRKLVMMMQKEVAQRMIAQP--QTKDYGSLSI 179
>gi|260434330|ref|ZP_05788300.1| dimethyladenosine transferase [Synechococcus sp. WH 8109]
gi|260412204|gb|EEX05500.1| dimethyladenosine transferase [Synechococcus sp. WH 8109]
Length = 274
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 15/154 (9%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIE 170
G RK GQH++ + + ++ AA +Q D VLE+GPG G+LT LL AG V AIE
Sbjct: 5 GHHARKRFGQHWLRDESVLQRIIEAADLQSTDRVLEVGPGRGALTERLLAAGLKAVHAIE 64
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D+ +V ++ERF + + Q D ++ + L + R + KVVANIP+NI+
Sbjct: 65 LDRDLVDGLQERFEAQPGFSLHQGDVLEAP-----MELSDGRIAD----KVVANIPYNIT 115
Query: 231 TDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
++++L+ P+ + +VLL+Q+E A R+
Sbjct: 116 GPLLERLVGRLDRPVDPPYQRLVLLVQKEVAERI 149
>gi|254416619|ref|ZP_05030370.1| dimethyladenosine transferase [Coleofasciculus chthonoplastes PCC
7420]
gi|196176585|gb|EDX71598.1| dimethyladenosine transferase [Coleofasciculus chthonoplastes PCC
7420]
Length = 283
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 9/148 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K QH++ + + +Q+ AA +Q D +LEIGPGTG LT LL +++A+E D+ +
Sbjct: 7 KQFAQHWLRSEKALNQIITAAKLQPRDRLLEIGPGTGVLTRRLLGEVESLVAVEIDRDLC 66
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+ + + +LQ D + ++ H L+ F +S + KVVANIP+NI+ +++
Sbjct: 67 QRLVKSLGQNENFLLLQGDILSLNLAEH-LAAFPHFQSPN---KVVANIPYNITGPILQT 122
Query: 237 LL-----PMGDIFSEVVLLLQEETALRL 259
LL P+ F +VLL+Q+E A RL
Sbjct: 123 LLGTIAQPITPAFELIVLLVQKEVAQRL 150
>gi|318041295|ref|ZP_07973251.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Synechococcus sp. CB0101]
Length = 270
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQH 174
RK GQH++ + + DQ+ AAA + D VLE+GPG G+LT LL + A V A+E D+
Sbjct: 9 RKRFGQHWLKDERVLDQILAAAELSAADTVLEVGPGRGALTERLLASPAAAVRAVELDRD 68
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+V ++ERF+ + + D + + +G VVANIP+NI+ ++
Sbjct: 69 LVEGLQERFSGDPRFDLTPGDVLAVPL------------PEAGI--VVANIPYNITGPLL 114
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++L+ P+ + +VLL+Q+E R+
Sbjct: 115 ERLVGRLDRPVAQPYRRLVLLMQQEVGERI 144
>gi|268608155|ref|ZP_06141882.1| dimethyladenosine transferase [Ruminococcus flavefaciens FD-1]
Length = 285
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 6/163 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++N +I ++A Q G VLEIG G G LT L V A+E D ++
Sbjct: 22 KGLGQNFIINPDICPKIAEMGNAQAGYGVLEIGTGIGVLTAELAKRADKVCAVEIDTRLL 81
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ E + D +K+ ED +KC ++ + F+ ++ V AN+P+ I++ VI
Sbjct: 82 PILEETLSDFDNIKIFNEDIMKCDLQKLIAEEFQGLHTA-----VCANLPYYITSPVIML 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
LL + +++Q+E A RL + T + I + VN+Y
Sbjct: 137 LLESKLPIDSITVMVQKEAAQRLC-AKVGTRDSGAITVGVNYY 178
>gi|422344629|ref|ZP_16425554.1| dimethyladenosine transferase [Selenomonas noxia F0398]
gi|355376698|gb|EHG23940.1| dimethyladenosine transferase [Selenomonas noxia F0398]
Length = 290
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 92/166 (55%), Gaps = 11/166 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ++++++ + ++ AAA + D VLEIGPG G+LT L GA V+A+E D+ +
Sbjct: 27 KRLGQNFLVDAGVVQKIVAAAELTREDTVLEIGPGIGTLTQGLAETGARVVAVELDKKLP 86
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHM-LSLFERRKSSSGFAKVVANIPFNISTDVIK 235
++ E D + V+ D +K I + + L ER KV AN+P+ I+T ++
Sbjct: 87 AVLAETLRGYDNVTVVPGDILKLDIPALINLGAGER-------FKVAANLPYYITTPILM 139
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
LL +V ++Q+E A+R+ P + +Y +++ V +++
Sbjct: 140 ALLEQRLPIERLVTMVQKEVAVRMTARPG--SKDYGALSVAVQYFT 183
>gi|398981221|ref|ZP_10689405.1| dimethyladenosine transferase [Pseudomonas sp. GM25]
gi|398133939|gb|EJM23120.1| dimethyladenosine transferase [Pseudomonas sp. GM25]
Length = 272
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + + GD +LEIGPG G+LT +LN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSISAKAGDRMLEIGPGQGALTAGILNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ ++FA + Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 IPILNQQFAGKSNFNLHQGDALKFD--------FNSLNAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL I ++ +LQ+E RL
Sbjct: 122 HLLNNAGIIRDMHFMLQKEVVERL 145
>gi|333922301|ref|YP_004495881.1| ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333747862|gb|AEF92969.1| Ribosomal RNA small subunit methyltransferase A [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 296
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 94/166 (56%), Gaps = 2/166 (1%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK+LGQ++++++ I D++ AA + E D+ EIGPG G LT L VLA+E DQ++
Sbjct: 22 RKALGQNFLMDANIIDKIVRAANLSENDLAFEIGPGLGVLTRRLAQEAGRVLAVEIDQNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNISTDVI 234
+ ++ E A + +V+Q D K + + G A K+VAN+P+ I+T ++
Sbjct: 82 LPILNETLADLPNAEVIQADARKVDFDQLAAERTQGQFGPGGKAYKLVANLPYYITTPLL 141
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
LL G +V+++Q+E A RL + S +Y +++ V +Y+
Sbjct: 142 LHLLTSGFNLELLVVMIQKEVADRL-QASPGGKDYGSLSVVVQYYT 186
>gi|239628929|ref|ZP_04671960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519075|gb|EEQ58941.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 288
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 93/167 (55%), Gaps = 10/167 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ +AA + + D VLEIGPG G++T L V+A+E D ++
Sbjct: 22 QKKFGQNFLIDTHVLDKIISAAGITKEDCVLEIGPGIGTMTQYLAEHAGRVVAVEIDTNL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E D + V+ D +K I L + KVVAN+P+ I+T +I
Sbjct: 82 LPILDETLKGYDNVTVINNDILKLDIN----KLVDEYNGGRPI-KVVANLPYYITTPIIM 136
Query: 236 QLLPMGDI-FSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L GD+ V +++Q+E A R+ V P + +Y +++ V +Y+
Sbjct: 137 GLF-EGDVPIDNVTVMVQKEVADRMQVGPG--SKDYGALSLAVQYYA 180
>gi|33240213|ref|NP_875155.1| dimethyladenosine transferase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|62900571|sp|Q7VCH7.1|RSMA_PROMA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|33237740|gb|AAP99807.1| Dimethyladenosine transferase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 279
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 19/157 (12%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIE 170
G PRK GQH++ + I +++ AA +QE D +LEIGPG G+LT LL + ++ +E
Sbjct: 5 GHVPRKRFGQHWLRDDSILEKILLAADLQEEDRILEIGPGRGALTEKLLESNVKLVHGVE 64
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA--KVVANIPFN 228
D ++ +++RFA + + + D + + H G A KVVANIP+N
Sbjct: 65 LDAELIVGLKQRFAGQSRFTLQEGDALSVSLLPH-----------DGIAANKVVANIPYN 113
Query: 229 ISTDVIKQLLPMGDIFSEV-----VLLLQEETALRLV 260
I+ ++++L+ SEV VLL+Q+E A R++
Sbjct: 114 ITGPLLERLIGRLGRSSEVKYQRLVLLVQKEVAKRIL 150
>gi|365840331|ref|ZP_09381524.1| dimethyladenosine transferase [Anaeroglobus geminatus F0357]
gi|364561692|gb|EHM39581.1| dimethyladenosine transferase [Anaeroglobus geminatus F0357]
Length = 290
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 9/143 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQ++++ ++ +AAAA V+ GD VLEIGP G+LT L GA + A+E D ++
Sbjct: 30 KKWGQNFLIRPQVVRDIAAAAGVRNGDPVLEIGPRYGTLTQALAETGADITAVEIDGRLL 89
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++ + D ++++ D +K I + M F V AN+P+ I+T VI +
Sbjct: 90 PILAKTLEKYDNVRIIHGDIMKTDIAAEM--------KYEPFT-VCANLPYYITTPVIMR 140
Query: 237 LLPMGDIFSEVVLLLQEETALRL 259
LL +V+++Q+E A R+
Sbjct: 141 LLEEKLSIRRMVVMVQKEVAERM 163
>gi|157413292|ref|YP_001484158.1| dimethyladenosine transferase [Prochlorococcus marinus str. MIT
9215]
gi|166987696|sp|A8G4P1.1|RSMA_PROM2 RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|157387867|gb|ABV50572.1| putative rRNA (adenine-N6,N6)-dimethyltransferase [Prochlorococcus
marinus str. MIT 9215]
Length = 274
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 30/166 (18%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+NSK +K GQH+++N +I +++ A + E D +LEIGPG G+LT LL++ L
Sbjct: 1 MNSKNYHQKKRFGQHWLVNKKILEKIKEIAVLNENDFILEIGPGKGALTAKLLDSKIKKL 60
Query: 168 -AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
A+E D ++ L+ ++F + D+ + D + ++ S + KV+ANIP
Sbjct: 61 HAVELDNDLINLLNDKFNNNDKFSLQHGDILSVNLDS----------INKKITKVIANIP 110
Query: 227 FNISTDVIKQLLPMGDIF------------SEVVLLLQEETALRLV 260
+NI+ P+ DIF +++ L+Q++ R++
Sbjct: 111 YNITG-------PILDIFIGRLGIIRNCNYEKIIFLMQKDVVDRIL 149
>gi|421613007|ref|ZP_16054100.1| rRNA adenine dimethylase [Rhodopirellula baltica SH28]
gi|440717648|ref|ZP_20898130.1| rRNA adenine dimethylase [Rhodopirellula baltica SWK14]
gi|408496144|gb|EKK00710.1| rRNA adenine dimethylase [Rhodopirellula baltica SH28]
gi|436437268|gb|ELP30924.1| rRNA adenine dimethylase [Rhodopirellula baltica SWK14]
Length = 326
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 7/161 (4%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
K L + G P GQ+++++ + + +A +A + DIVLEIG G GSLT+++ +
Sbjct: 36 KRLTAAGLRPVSKYGQNFLIDLNLVELIARSAEIGPSDIVLEIGTGVGSLTSIMASQAGA 95
Query: 166 VLAIEKDQHMVGLVRERFASIDQLKVLQEDFV--KCHIRSHMLSLFERRKS----SSGFA 219
+L +E DQ++ L E A +K++Q D + K R ++ KS S F
Sbjct: 96 ILTVEIDQNLFQLASEELAPFPHVKMIQGDALKNKSTFRDDIMESIREAKSRLPDDSKFM 155
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
+VAN+P+N++T ++ LL +V+ +Q+E R+V
Sbjct: 156 -LVANLPYNVATPIVSNLLHQDPPPDRIVVTIQKELGERMV 195
>gi|78187147|ref|YP_375190.1| dimethyladenosine transferase [Chlorobium luteolum DSM 273]
gi|119365044|sp|Q3B3D4.1|RSMA_PELLD RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|78167049|gb|ABB24147.1| dimethyladenosine transferase [Chlorobium luteolum DSM 273]
Length = 273
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 15/155 (9%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K LGQ+++ + I ++ AA+ D +LEIGPG G+LT +L +EKD+ +
Sbjct: 14 KKKLGQNFLTDRNITRKIVAASGAGSQDRILEIGPGFGALTREILEVCPAFTVVEKDRAL 73
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+R+ + QL++++ DF+ + R ++ G +V+ NIP++I+T ++
Sbjct: 74 AAFIRQEYP---QLQLIEADFLDIDL---------ERLAAGGPLRVLGNIPYSITTPILF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEY 269
+LL + L++Q E A RLV PS T EY
Sbjct: 122 KLLENRRSITSATLMMQHEVAARLVATPS--TKEY 154
>gi|315639886|ref|ZP_07895017.1| dimethyladenosine transferase [Enterococcus italicus DSM 15952]
gi|315484311|gb|EFU74776.1| dimethyladenosine transferase [Enterococcus italicus DSM 15952]
Length = 295
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AA + + V+E+GPG G+LT L A V+A E D +
Sbjct: 25 KKSLGQNFLTDPNILRNIVAAGDIDQDTNVIEVGPGIGALTEYLARAAHQVVAFEIDDRL 84
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + V+ +D ++ I H+L E+ + KVVAN+P+ I+T ++
Sbjct: 85 LPVLADTLSPYDNVSVIHQDILQARI-DHVLQ--EQFTNDGRPVKVVANLPYYITTPIMM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
L +E+++++Q+E A R+ +P T Y ++I V +Y
Sbjct: 142 HFLDSKVEIAEMIVMMQKEVADRISAKPG--TKAYGSLSIAVQYY 184
>gi|311028973|ref|ZP_07707063.1| dimethyladenosine transferase [Bacillus sp. m3-13]
Length = 296
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L+ G +KSLGQ++++++ I + V E +EIGPG G+LT +
Sbjct: 11 TKEILDKYGFSFKKSLGQNFLIDTNILRNIVEYGEVSEKTAAIEIGPGIGALTEQIAKRA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM---LSLFERRKSSSGFAK 220
V A E DQ ++ ++ + + D + V+ +D +K + + L +E +
Sbjct: 71 GKVFAFEIDQRLLPILEDTLSPYDNVTVIHKDILKADVTELIGEELKAYEE-------VR 123
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
V+AN+P+ ++T +I +LL G + ++LQ+E A R+ +P T EY ++I V ++
Sbjct: 124 VIANLPYYVTTPIIMKLLQEGLPLKSITVMLQKEVAERMAAKPG--TKEYGSLSIAVQYF 181
Query: 280 S 280
+
Sbjct: 182 T 182
>gi|156084308|ref|XP_001609637.1| dimethyladenosine transferase protein [Babesia bovis T2Bo]
gi|154796889|gb|EDO06069.1| dimethyladenosine transferase protein, putative [Babesia bovis]
Length = 366
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQH + N I D++ AA ++ D VLEIGPGTG+LT L+ V+AI+ D MV
Sbjct: 51 KKFGQHMLKNPGILDKIILAAEIRSSDTVLEIGPGTGNLTIRLVPLARKVIAIDIDNRMV 110
Query: 177 GLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
G V++R S+ L V++ D + R + F AN+P+ IS+ +
Sbjct: 111 GEVKKRCLSMGYSNLDVIEGDAL--------------RITYPKFDVCTANLPYQISSPFV 156
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV 260
+LL +F VL+ Q+E A RL+
Sbjct: 157 FKLLSHRPLFRCAVLMFQKEFAERLL 182
>gi|406671663|ref|ZP_11078902.1| dimethyladenosine transferase [Facklamia hominis CCUG 36813]
gi|405580913|gb|EKB54972.1| dimethyladenosine transferase [Facklamia hominis CCUG 36813]
Length = 303
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 14/163 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++ +I +++ A + + V+EIGPG G+LT L V+A E DQ
Sbjct: 28 KKSLGQNFLIEPQILNKMVDLADIDKNCTVIEIGPGIGALTQFLAMRAKRVIAFEIDQRF 87
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK----VVANIPFNIST 231
V ++ E D + V+ ED +K +++ G + VVAN+P+ I+T
Sbjct: 88 VEILSETLVDFDNVTVIAEDILKVDF---------SKEAYKGLLEEPLMVVANLPYYITT 138
Query: 232 DVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINI 274
+I LL F +V+L+Q+E A R+ S+ T Y +++
Sbjct: 139 PIIMHLLQSELPFQSLVMLMQKEVAQRMTA-SVGTKAYNSLSV 180
>gi|71425341|ref|XP_813086.1| ribosomal RNA adenine dimethylase family protein [Trypanosoma cruzi
strain CL Brener]
gi|70877938|gb|EAN91235.1| ribosomal RNA adenine dimethylase family protein, putative
[Trypanosoma cruzi]
Length = 344
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQH + N + + AA++ D+VLEIGPGTG+LT LL A V+A E D MV
Sbjct: 64 KGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLLQASKKVIAFEVDSRMV 123
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+ +RF + LQ ++ + H F+ K VAN+P+ IS+ ++ +
Sbjct: 124 AELNKRFQNTPLASKLQ--VIRGNCLDHEFPYFD---------KCVANVPYAISSALVFK 172
Query: 237 LLPMGDIFSEVVLLLQEETALRL 259
LL F VL+ Q E ALR+
Sbjct: 173 LL-RKPTFKCAVLMFQREFALRV 194
>gi|365154899|ref|ZP_09351297.1| ribosomal RNA small subunit methyltransferase A [Bacillus smithii
7_3_47FAA]
gi|363629010|gb|EHL79703.1| ribosomal RNA small subunit methyltransferase A [Bacillus smithii
7_3_47FAA]
Length = 291
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 99/168 (58%), Gaps = 11/168 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ + +++ AA + + +EIGPG G+LT L V+A E D+ +
Sbjct: 22 KKSLGQNFLVDPNVLNRITEAAGLTKETAAIEIGPGIGALTEHLARKAGKVVAFEIDKRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK--VVANIPFNISTDV 233
+ ++++ + ++++ +D +K +++ + ++ SG++ VVAN+P+ ++T +
Sbjct: 82 LPILKDTLSPYKNVEIIHQDVLKANVKEVI------KEELSGYSDIMVVANLPYYVTTPI 135
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
I +LL +V+++Q+E A RL +P T EY ++I V +Y+
Sbjct: 136 IMKLLEECLPIRGLVVMMQKEVADRLSAQPG--TKEYGSLSIAVQYYT 181
>gi|16799304|ref|NP_469572.1| dimethyladenosine transferase [Listeria innocua Clip11262]
gi|27151588|sp|Q92F79.1|RSMA_LISIN RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|16412646|emb|CAC95460.1| dimethyladenosine transferase (16S rRNA dimethylase) [Listeria
innocua Clip11262]
Length = 295
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ D ++V+ D +K + + F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSNYDNVRVVHNDVLKADVAEVITEQFAKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFY 182
>gi|423100963|ref|ZP_17088667.1| dimethyladenosine transferase [Listeria innocua ATCC 33091]
gi|370792499|gb|EHN60366.1| dimethyladenosine transferase [Listeria innocua ATCC 33091]
Length = 295
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ D ++V+ D +K + + F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSNYDNVRVVHNDVLKADVAEVITEQFAKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFY 182
>gi|440793386|gb|ELR14572.1| dimethyladenosine transferase [Acanthamoeba castellanii str. Neff]
Length = 294
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 17/149 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N +I + + A ++ D+VLEIGPGTG+LT +L V+A+E D MV
Sbjct: 27 KSFGQHLLKNPQIIEGIVTKAKLKSTDVVLEIGPGTGNLTMKMLPLVKKVIAVELDPRMV 86
Query: 177 GLVRERF---ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+++R A +L+++ DF+K ++ F VAN+P+ IS+ +
Sbjct: 87 AELQKRVQGTAHGHKLELILCDFMKVNL--------------PYFDVCVANVPYQISSPL 132
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLVEP 262
+ +LL + VL+ Q E A+RLV P
Sbjct: 133 VFKLLSHRPVPRCAVLMFQREFAMRLVAP 161
>gi|73748246|ref|YP_307485.1| dimethyladenosine transferase [Dehalococcoides sp. CBDB1]
gi|119365021|sp|Q3ZZE6.1|RSMA_DEHSC RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|73659962|emb|CAI82569.1| dimethyladenosine transferase [Dehalococcoides sp. CBDB1]
Length = 291
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 100/193 (51%), Gaps = 19/193 (9%)
Query: 87 ASACIVCARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVL 146
ASA + A++++ T+KA RK LGQH++++ + +++ AAA ++ D V+
Sbjct: 10 ASAPSLMAQAKEMMEGYTLKA--------RKGLGQHFLISQGVLNKILAAADLKPTDTVI 61
Query: 147 EIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206
E+GPG G+LT LL V+A+E D ++ + E+F +++ D +K
Sbjct: 62 EVGPGLGALTEELLKRAGQVIAVELDDKLIDALTEKFKGYPNFRLIHSDILKTSP----- 116
Query: 207 SLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRT 266
E K+VAN+P+ I++ V++Q L +V+++Q+E A +V +T
Sbjct: 117 ---EEILGQDVPYKLVANLPYYITSAVLRQFLEAKLKPESMVVMVQKEVAKNIVA---KT 170
Query: 267 SEYRPINIFVNFY 279
+ + + V FY
Sbjct: 171 GDMGLLTLSVRFY 183
>gi|149182822|ref|ZP_01861284.1| dimethyladenosine transferase [Bacillus sp. SG-1]
gi|148849489|gb|EDL63677.1| dimethyladenosine transferase [Bacillus sp. SG-1]
Length = 292
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I + A + E +EIGPG G+LT L VLA E DQ +
Sbjct: 23 KKSLGQNFLIDPNILRNITEYAGLTEKTAAIEIGPGIGALTEHLARTAGKVLAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + + ++ ED +K ++ + E+ + VVAN+P+ ++T +I
Sbjct: 83 LPILADTLSPYNNITIVNEDVLKADVQ----EMIEKELADYEDIMVVANLPYYVTTPIIL 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL G + ++LQ+E R+ +P T EY ++I + +Y+
Sbjct: 139 KLLTEGLPIKGICVMLQKEVGDRIAAKPG--TKEYGSLSIAIQYYT 182
>gi|66810281|ref|XP_638864.1| dimethyladenosine transferase [Dictyostelium discoideum AX4]
gi|74854506|sp|Q54QK7.1|DIM1_DICDI RecName: Full=Probable dimethyladenosine transferase; AltName:
Full=DIM1 dimethyladenosine transferase 1 homolog;
AltName: Full=Probable 18S rRNA
(adenine(1779)-N(6)/adenine(1780)-N(6))-
dimethyltransferase; AltName: Full=Probable 18S rRNA
dimethylase; AltName: Full=Probable
S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
dimethyltransferase
gi|60467487|gb|EAL65509.1| dimethyladenosine transferase [Dictyostelium discoideum AX4]
Length = 314
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 76/146 (52%), Gaps = 17/146 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N I D + + ++ D VLEIGPGTG+LT LL V+AIE D M
Sbjct: 31 KSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLENCKKVIAIEVDPRMA 90
Query: 177 GLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+++R A+ L+++ DF+K + F VAN+P+ IS+ +
Sbjct: 91 AELQKRVAASPYAQHLQIILGDFLKVDL--------------PYFDVCVANVPYQISSPL 136
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL 259
+LL IF VL+ Q+E ALRL
Sbjct: 137 TFKLLAHRPIFRTAVLMFQKEFALRL 162
>gi|319654955|ref|ZP_08009029.1| dimethyladenosine transferase [Bacillus sp. 2_A_57_CT2]
gi|317393380|gb|EFV74144.1| dimethyladenosine transferase [Bacillus sp. 2_A_57_CT2]
Length = 292
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I ++ A + E +EIGPG G+LT L VLA E DQ +
Sbjct: 23 KKSLGQNFLIDTNILRRIVDHADLSEESGAIEIGPGIGALTEQLARRSKKVLAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E + + ++ ED +K +++ + FE VVAN+P+ ++T +I
Sbjct: 83 LPILEETLSPYPHVSIINEDVLKADVKTAIEQEFE----GINDIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V +LQ+E A R+ P T EY ++I V +Y+
Sbjct: 139 KLLEDKLPIRGIVCMLQKEVADRISARPG--TKEYGSLSIAVQYYT 182
>gi|300114051|ref|YP_003760626.1| dimethyladenosine transferase [Nitrosococcus watsonii C-113]
gi|299539988|gb|ADJ28305.1| dimethyladenosine transferase [Nitrosococcus watsonii C-113]
Length = 264
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
+N G RK GQH++ + ++ ++L A + GD+++EIGPG G+LT LL+ +
Sbjct: 1 MNLLGHRARKRFGQHFLHDQQVIERLIRAIKPKLGDLMVEIGPGQGALTLPLLHCLGQLE 60
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
AIE D+ + + ER AS L++ D + R+ L+ RR +VV N+P+
Sbjct: 61 AIELDRDLAAYLIERCASEGNLRLHNVDSLTFDFRT--LAHDNRR------LRVVGNLPY 112
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
NIST ++ LL I ++ +LQ E RL +P +Y +++ V FY
Sbjct: 113 NISTPLLFHLLGQVGILEDMHFMLQREVVTRLAAKPG--GKDYGRLSVMVQFY 163
>gi|90423811|ref|YP_532181.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18]
gi|119365055|sp|Q215S4.1|RSMA_RHOPB RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|90105825|gb|ABD87862.1| dimethyladenosine transferase [Rhodopseudomonas palustris BisB18]
Length = 286
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 16/151 (10%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQH 174
RKSLGQ+++L+ + ++A AA +G V+EIGPG G LT LL GA V+AIE+D+
Sbjct: 22 RKSLGQNFLLDLNLLTRIARAAGPLDGATVIEIGPGPGGLTRALLALGAAKVIAIERDER 81
Query: 175 MVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF-AKVVANIPFNISTD 232
+G ++E A +L+++ D ++++ R G AK+VAN+P+NI+T
Sbjct: 82 ALGALQEIAAHYPGRLEIVCADA----------TIYDPRPLLGGARAKIVANLPYNIATP 131
Query: 233 VIKQLL---PMGDIFSEVVLLLQEETALRLV 260
++ L P + +VL+ Q E A R+V
Sbjct: 132 LLIGWLSIEPWPPWYDTMVLMFQREVAERIV 162
>gi|227877971|ref|ZP_03995975.1| dimethyladenosine transferase [Lactobacillus crispatus JV-V01]
gi|256844351|ref|ZP_05549837.1| dimethyladenosine transferase [Lactobacillus crispatus 125-2-CHN]
gi|256849246|ref|ZP_05554679.1| dimethyladenosine transferase [Lactobacillus crispatus MV-1A-US]
gi|312978360|ref|ZP_07790102.1| dimethyladenosine transferase [Lactobacillus crispatus CTV-05]
gi|227862441|gb|EEJ69956.1| dimethyladenosine transferase [Lactobacillus crispatus JV-V01]
gi|256613429|gb|EEU18632.1| dimethyladenosine transferase [Lactobacillus crispatus 125-2-CHN]
gi|256714022|gb|EEU29010.1| dimethyladenosine transferase [Lactobacillus crispatus MV-1A-US]
gi|310894703|gb|EFQ43775.1| dimethyladenosine transferase [Lactobacillus crispatus CTV-05]
Length = 294
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +++ D V+EIGPG GSLT LL AGA V A E D +
Sbjct: 25 KKNLGQNFLVDQTAILGIVEAAGIKKDDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSL 84
Query: 176 VGLVRERFA-SID------QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++ ID + K++ +D +K + + F+ K KVVAN+P+
Sbjct: 85 PTILQNELPKKIDDQPLASRFKLILKDVLKADFKVDISDFFDFTKP----IKVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L F+ + L++Q+E A RL E + EY P+ I V
Sbjct: 141 ITTPIIFALAESDLHFTSLTLMMQKEVAERL-EAQPGSKEYGPLTISV 187
>gi|407417208|gb|EKF38008.1| ribosomal RNA adenine dimethylase family protein, putative
[Trypanosoma cruzi marinkellei]
Length = 344
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQH + N + + AA++ D+VLEIGPGTG+LT LL A V+A E D MV
Sbjct: 64 KGFGQHILKNPLVIAAIVEKAAIKPTDVVLEIGPGTGNLTEKLLQASKKVIAFEVDSRMV 123
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+ +RF + LQ ++ + H F+ K VAN+P+ IS+ ++ +
Sbjct: 124 AELNKRFQNTPLASKLQ--VIRGNCLDHEFPYFD---------KCVANVPYAISSALVFK 172
Query: 237 LLPMGDIFSEVVLLLQEETALRL 259
LL F VL+ Q E ALR+
Sbjct: 173 LL-RKPTFKCAVLMFQREFALRV 194
>gi|427428825|ref|ZP_18918864.1| Dimethyladenosine transferase [Caenispirillum salinarum AK4]
gi|425881488|gb|EKV30175.1| Dimethyladenosine transferase [Caenispirillum salinarum AK4]
Length = 290
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 17/167 (10%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQH 174
RKSLGQ+++L+ + ++A AA + V+EIGPG G LT LL AGA V+AIE+D
Sbjct: 37 RKSLGQNFLLDLNLTGRIARAAGAIDDGTVVEIGPGPGGLTRALLYAGARKVIAIERDPR 96
Query: 175 ---MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
+ + ER+ +L+V++ D ++ + + G ++VAN+P+N++T
Sbjct: 97 ALPALAEIAERWPG--RLEVIEADALEVDVTAL----------GDGPRRIVANLPYNVAT 144
Query: 232 DVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278
++ L D + + L+ Q+E RLV RT +Y +++ +
Sbjct: 145 PLLLGWLKRLDTLAGMTLMFQKEVVDRLVA-KPRTKDYGRLSVITQW 190
>gi|397691054|ref|YP_006528308.1| dimethyladenosine transferase [Melioribacter roseus P3M]
gi|395812546|gb|AFN75295.1| dimethyladenosine transferase [Melioribacter roseus P3M]
Length = 265
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 94/166 (56%), Gaps = 12/166 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P K GQ+Y+ + I +++ V+EGD ++EIGPG G+LT +L + +E D+
Sbjct: 7 PLKRFGQNYLKDKNIIEKIIEEFGVKEGDKIIEIGPGRGALTEILYQRTDDLTLVEIDKR 66
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
++ ++E F + K++ DF+K ++ LS + +V+ NIP+NI++ ++
Sbjct: 67 VIETLKENFPN---AKIINRDFLKLNLSE--LS------APDNKLRVIGNIPYNITSPIL 115
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+L+ + S+ +L++Q E A R+ + T +Y +++ +NF++
Sbjct: 116 FKLIEERESVSDALLMVQYEVAKRITS-TPGTKDYGILSVIMNFFT 160
>gi|398997172|ref|ZP_10700002.1| dimethyladenosine transferase [Pseudomonas sp. GM21]
gi|398124665|gb|EJM14171.1| dimethyladenosine transferase [Pseudomonas sp. GM21]
Length = 272
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 80/144 (55%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + D VLEIGPG G+LT LLN+GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKTEDRVLEIGPGQGALTQGLLNSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FA + Q D +K F ++ G +VV N+P+NIST +I
Sbjct: 70 VPILNQQFAGKSNFSLHQGDALKFD--------FTSLNAAPGSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL + ++ +LQ+E R+
Sbjct: 122 HLLHNASLIRDMHFMLQKEVVERM 145
>gi|320159790|ref|YP_004173014.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1]
gi|319993643|dbj|BAJ62414.1| dimethyladenosine transferase [Anaerolinea thermophila UNI-1]
Length = 305
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 9/152 (5%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L S G PRKSLGQ+++ + I ++ +A + VLEIGPG GSLT VL V+
Sbjct: 34 LRSHGLAPRKSLGQNFLTDPAILRRIVESAELPPQAEVLEIGPGLGSLTRVLAQVARRVV 93
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ L+ E + ++VL D ++ M SS+G+ VVANIP+
Sbjct: 94 AVELDSTLIPLLDEVVSPYGNVEVLHGDILQFDPARLM--------SSAGYF-VVANIPY 144
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
I++ V++ LL VVL +Q E A R+
Sbjct: 145 YITSAVMRHLLEASIRPQRVVLTIQREVAERI 176
>gi|420151262|ref|ZP_14658392.1| dimethyladenosine transferase [Actinomyces georgiae F0490]
gi|394772212|gb|EJF51573.1| dimethyladenosine transferase [Actinomyces georgiae F0490]
Length = 347
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 12/158 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P K+LGQ+++ ++ ++ AAA V EGD V+E+GPG GSLT LL AGA V A+E D
Sbjct: 60 PTKALGQNFVHDAGTVRRIVAAAGVGEGDEVIEVGPGLGSLTLALLEAGARVRAVEIDPV 119
Query: 175 MVG----LVRERFA-SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
+ VR R + D+L V+ D + + + AK+VAN+P+N+
Sbjct: 120 LAAALPETVRARMGDAADRLHVVAADATAITGPADIGPDWPP------PAKLVANLPYNV 173
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRT 266
+ V+ +L ++V++++Q E A RL P RT
Sbjct: 174 AVPVLLAMLDSFPTLTDVLVMVQAEVADRLAAGPGSRT 211
>gi|302800922|ref|XP_002982218.1| hypothetical protein SELMODRAFT_116036 [Selaginella moellendorffii]
gi|300150234|gb|EFJ16886.1| hypothetical protein SELMODRAFT_116036 [Selaginella moellendorffii]
Length = 312
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N + + A ++ DIVLEIGPGTG+LT LL V+A+E D MV
Sbjct: 26 KSRGQHILKNPLVVQSIVQKAGLKSTDIVLEIGPGTGNLTVKLLEVAKKVIAVELDPRMV 85
Query: 177 GLVRERFASIDQ---LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
++ R Q L+++Q D +K + F VANIP+ IS+ +
Sbjct: 86 LELQRRVQGTPQANHLQIIQGDVLKTEL--------------PYFDVCVANIPYQISSPL 131
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+LL +F V++ Q+E A+RLV
Sbjct: 132 TFKLLSHRPLFRAAVIMFQKEFAMRLV 158
>gi|422414618|ref|ZP_16491575.1| dimethyladenosine transferase [Listeria innocua FSL J1-023]
gi|313625508|gb|EFR95235.1| dimethyladenosine transferase [Listeria innocua FSL J1-023]
Length = 295
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 6/177 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++S I ++ A + + V+EIGPG G+LT L
Sbjct: 11 TTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+A E DQ ++ ++ + ++ D ++V+ D +K + + F + + K+VA
Sbjct: 71 NEVVAFEIDQRLLPILDDTLSNYDNVRVVHNDVLKADVAEVITEQFAKPELP---LKIVA 127
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
N+P+ ++T +I +LL + +LQ+E A R+ PS T Y + I + FY
Sbjct: 128 NLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPS--TKSYGSLTIAIQFY 182
>gi|303234855|ref|ZP_07321480.1| dimethyladenosine transferase [Finegoldia magna BVS033A4]
gi|302493973|gb|EFL53754.1| dimethyladenosine transferase [Finegoldia magna BVS033A4]
Length = 283
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 89/160 (55%), Gaps = 9/160 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++++ + + + + + E D V+EIGPG G+LT L++ + +IE D ++
Sbjct: 24 KALGQNFLIDGNLIENIIDYSDITEDDYVIEIGPGFGTLTERLVDKCKFLYSIEIDSRLM 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++ + K++ ED +K + E F KVVAN+P+ I+T +I+
Sbjct: 84 DVLKYTVGDRENFKIINEDVLKVDLN-------ELNHEDKKF-KVVANLPYYITTPIIEH 135
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
L DI + +++Q+E A R+V + + +Y +++FV
Sbjct: 136 LFNYRDIIESITVMVQKEVANRMV-ADVGSKDYASLSLFV 174
>gi|219851214|ref|YP_002465646.1| dimethyladenosine transferase [Methanosphaerula palustris E1-9c]
gi|219545473|gb|ACL15923.1| dimethyladenosine transferase [Methanosphaerula palustris E1-9c]
Length = 262
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 20/145 (13%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
QH++++ D++ A V +G VLEIGPG G LT LL+AGATV AIE D+ ++ +
Sbjct: 7 QHFLVDQRAIDRIIECAGV-DGKSVLEIGPGEGVLTRALLDAGATVSAIEVDRTLIAHLT 65
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFE---RRKSSSGFAKVVANIPFNISTDVIKQL 237
+RF +D+ IRS L+L E R F +VAN+P++IS+ + +L
Sbjct: 66 DRF--VDE------------IRSGFLTLIEGDAARCPFPPFEVMVANLPYSISSPITFRL 111
Query: 238 LPMGDIFSEVVLLLQEETALRLVEP 262
L FS VL+ Q E A R+ P
Sbjct: 112 LDTD--FSSAVLMYQREFAARMAAP 134
>gi|153956353|ref|YP_001397118.1| dimethyladenosine transferase [Clostridium kluyveri DSM 555]
gi|219856668|ref|YP_002473790.1| hypothetical protein CKR_3325 [Clostridium kluyveri NBRC 12016]
gi|146349211|gb|EDK35747.1| KsgA [Clostridium kluyveri DSM 555]
gi|219570392|dbj|BAH08376.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 281
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 87/164 (53%), Gaps = 11/164 (6%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ++++++ + + + + D V+EIGPG G+LT LL V AIE D ++
Sbjct: 19 KNLGQNFLIDNSVLQDILEGTDINKNDFVIEIGPGVGTLTKELLKRAKKVCAIELDSDLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E +++ +D +K + F K+VAN+P+ I+T +I +
Sbjct: 79 AILKEELKHYPNFELIHKDVLKTN--------FNEIIKDESSIKIVANLPYYITTPIISK 130
Query: 237 LLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFY 279
+L F + +++Q+E R++ EP+ + Y +++ V +Y
Sbjct: 131 ILNNKYNFKTLTIMIQKEVGERMISEPNCK--RYGALSLLVQYY 172
>gi|440294373|gb|ELP87390.1| dimethyladenosine transferase, putative [Entamoeba invadens IP1]
Length = 295
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 17/147 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KS GQH + N I Q+ AA ++ D+VLEIGPGTG+LT +L ++AIE D M
Sbjct: 14 KSEGQHILKNPMIAQQIVDAAEIRRTDVVLEIGPGTGNLTMKILPQCKKLIAIEIDPRMA 73
Query: 177 GLVRERFA---SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+++R + + +++++ DF+K + F V+N P++IS+ +
Sbjct: 74 AELKKRVSITPYVKKIEIITGDFLKVDL--------------PYFDVCVSNTPYSISSPL 119
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +LL F VL+ Q E ALRLV
Sbjct: 120 VFKLLNHRPQFRSAVLMFQREFALRLV 146
>gi|325276041|ref|ZP_08141856.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. TJI-51]
gi|324098826|gb|EGB96857.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. TJI-51]
Length = 267
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I D++ A + G+ +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGIIDRILRAIHAKPGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++ +FA ++ Q D +K F R KVV N+P+NIST +I
Sbjct: 70 VPILQHKFADRSNFRLHQGDALKFD--------FNRLGVPPRSLKVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL + ++ +LQ+E R+
Sbjct: 122 HLLSHAGLIRDMHFMLQKEVVERM 145
>gi|239630423|ref|ZP_04673454.1| dimethyladenosine transferase dimethyltransferase [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|301067575|ref|YP_003789598.1| dimethyladenosine transferase (rRNA methylation) [Lactobacillus
casei str. Zhang]
gi|385821272|ref|YP_005857659.1| Dimethyladenosine transferase [Lactobacillus casei LC2W]
gi|385824464|ref|YP_005860806.1| Dimethyladenosine transferase [Lactobacillus casei BD-II]
gi|417981761|ref|ZP_12622425.1| dimethyladenosine transferase [Lactobacillus casei 12A]
gi|417984584|ref|ZP_12625203.1| dimethyladenosine transferase [Lactobacillus casei 21/1]
gi|417997317|ref|ZP_12637576.1| dimethyladenosine transferase [Lactobacillus casei M36]
gi|418011963|ref|ZP_12651709.1| dimethyladenosine transferase [Lactobacillus casei Lc-10]
gi|418013041|ref|ZP_12652703.1| dimethyladenosine transferase [Lactobacillus casei Lpc-37]
gi|239526706|gb|EEQ65707.1| dimethyladenosine transferase dimethyltransferase [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|300439982|gb|ADK19748.1| Dimethyladenosine transferase (rRNA methylation) [Lactobacillus
casei str. Zhang]
gi|327383599|gb|AEA55075.1| Dimethyladenosine transferase [Lactobacillus casei LC2W]
gi|327386791|gb|AEA58265.1| Dimethyladenosine transferase [Lactobacillus casei BD-II]
gi|410521164|gb|EKP96129.1| dimethyladenosine transferase [Lactobacillus casei 12A]
gi|410524423|gb|EKP99332.1| dimethyladenosine transferase [Lactobacillus casei 21/1]
gi|410533077|gb|EKQ07765.1| dimethyladenosine transferase [Lactobacillus casei M36]
gi|410551212|gb|EKQ25280.1| dimethyladenosine transferase [Lactobacillus casei Lc-10]
gi|410556238|gb|EKQ30151.1| dimethyladenosine transferase [Lactobacillus casei Lpc-37]
Length = 298
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ +S+I ++ AA + D V+EIGPG G+LT L ++ V+
Sbjct: 17 LKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADSAHQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K + + + F+ + + KVVAN+P+
Sbjct: 77 ALEIDDRLLPILDETLADYPNATVVNEDVLKTDLGALVAEHFDGKHT----LKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ LL + +++Q+E A RL + + EY ++I V +
Sbjct: 133 YITTPILLHLLRAQLPLHSMTVMMQKEVAERL-SATPGSKEYGSLSIAVQLVA 184
>gi|11499372|ref|NP_070611.1| dimethyladenosine transferase [Archaeoglobus fulgidus DSM 4304]
gi|27151555|sp|O28491.1|RSMA_ARCFU RecName: Full=Probable ribosomal RNA small subunit
methyltransferase A; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName:
Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
dimethyltransferase
gi|2648762|gb|AAB89464.1| dimethyladenosine transferase (ksgA) [Archaeoglobus fulgidus DSM
4304]
Length = 244
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 20/147 (13%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RKSLGQH +++ + ++ A + E D+VLE+G GTG+LT+ LL +V+ IEKD M
Sbjct: 4 RKSLGQHMLVDRRVISRIVGYAELSEDDVVLEVGCGTGNLTSALLRK-CSVVGIEKDPLM 62
Query: 176 VGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
V +RERF+ + +++Q D +K F K VANIP+ IS+
Sbjct: 63 VKRLRERFSDFIGKGRFRLIQGDALKVDF--------------PYFTKFVANIPYKISSP 108
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRL 259
+ +LL F V++ Q E A RL
Sbjct: 109 LTFKLLKTD--FRLAVVMYQREFAERL 133
>gi|425738696|ref|ZP_18856953.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Staphylococcus massiliensis S46]
gi|425478967|gb|EKU46149.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Staphylococcus massiliensis S46]
Length = 295
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 13/181 (7%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T+ L G +KSLGQ+++++ I +++ ++ + E V+E+GPG GSLT L
Sbjct: 11 TLALLKEYGFNFKKSLGQNFLVDVNIINKIIESSDIDERTGVIEVGPGMGSLTEQLAKHA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC----HIRSHMLSLFERRKSSSGFA 219
VLA E DQ ++ ++++ + D V+ ED +K IR+HM
Sbjct: 71 KKVLAFEIDQRLIPVLKDTLSPYDNTVVINEDILKADVEQEIRTHM--------QDCDKI 122
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
VVAN+P+ I+T ++ LL V+++Q+E RL + T Y ++I +Y
Sbjct: 123 LVVANLPYYITTPILLTLLQQNTNIDGYVVMMQKEVGERL-NAKVGTKSYGSLSIVAQYY 181
Query: 280 S 280
+
Sbjct: 182 T 182
>gi|342216161|ref|ZP_08708808.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341587051|gb|EGS30451.1| dimethyladenosine transferase [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 287
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 7/179 (3%)
Query: 103 ATIKA-LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+TIK LN G K+LGQ+++++ + + V + D VLEIGPG G+LT L
Sbjct: 10 STIKEILNRHGFTMTKALGQNFLIDGNTVRGIVQGSGVTKEDRVLEIGPGIGTLTEELAL 69
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
+VLA+EKDQ + ++ E A D +++L D +K ++ F + +
Sbjct: 70 EAKSVLAVEKDQRLKPILEETMADYDNVEILFGDALKLDLKKEWEDRFGQDP-----VHI 124
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
VAN+P+ ++T ++ L + + +++Q+E A R+ T +Y + +F+ ++S
Sbjct: 125 VANLPYYVTTPILGALFDLDLPLKSLTVMVQKEVAERMCGQE-GTKDYGALTLFIRYHS 182
>gi|336435751|ref|ZP_08615465.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336000246|gb|EGN30398.1| ribosomal RNA small subunit methyltransferase A [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 296
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ++++++ + D++ +A + + D+V+EIGPG G++T L A V AIE D+ +
Sbjct: 24 QKKFGQNFLIDTHVLDKIIRSAEITKEDMVVEIGPGIGTMTQYLACAAGKVAAIEIDKAL 83
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + ++V+ +D +K I + + ++ KVVAN+P+ I+T +I
Sbjct: 84 IPILEDTLEGYENVQVINDDVLKVDI-----AKLAKEENGGRPIKVVANLPYYITTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ V P T +Y +++ V +Y+
Sbjct: 139 GLFENHVPLKSITVMVQKEVADRMQVGPG--TKDYGALSLAVQYYA 182
>gi|430751838|ref|YP_007214746.1| dimethyladenosine transferase [Thermobacillus composti KWC4]
gi|430735803|gb|AGA59748.1| dimethyladenosine transferase [Thermobacillus composti KWC4]
Length = 300
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK+LGQ++++++ + ++ AA + LEIGPG G+LT L A V AIE D+ +
Sbjct: 33 RKALGQNFLVDANVLRKIVDAAELGPSKGALEIGPGIGALTEQLAMAAGKVAAIELDRRL 92
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E FA ++++ D +K ++ L R + VVAN+P+ ++T ++
Sbjct: 93 IPILEELFAPCANVEIVHGDALKLDLK----QLIAERFAGLERVSVVANLPYYVTTPILM 148
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
+LL +V+++Q+E A R+ P EY +++ V +++
Sbjct: 149 KLLEDRLPLEHIVVMVQKEVAERMTAPP-GGKEYGSLSVAVRYFA 192
>gi|295702279|ref|YP_003595354.1| dimethyladenosine transferase [Bacillus megaterium DSM 319]
gi|294799938|gb|ADF37004.1| dimethyladenosine transferase [Bacillus megaterium DSM 319]
Length = 292
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I ++ A + E +EIGPG G+LT L VLA E DQ +
Sbjct: 23 KKSLGQNFLIDTNILHRIVDHAEITEETGAIEIGPGIGALTEQLAKRAKKVLAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + KV+ +D +K ++ + FE + VVAN+P+ ++T ++
Sbjct: 83 LPILADTLSPYSNAKVIHQDVLKADLKGMLEQEFENIED----LMVVANLPYYVTTPILM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +P T EY ++I + +Y+
Sbjct: 139 KLLEEQIPVRGIVVMLQKEVAERIAAKPG--TKEYGSLSIAIQYYT 182
>gi|146309027|ref|YP_001189492.1| dimethyladenosine transferase [Pseudomonas mendocina ymp]
gi|145577228|gb|ABP86760.1| dimethyladenosine transferase [Pseudomonas mendocina ymp]
Length = 269
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ A ++G+ +LEIGPG G++T LL +GA + IE D +
Sbjct: 9 RKRFGQNFLHDAGVIDRILRAIRAKDGERLLEIGPGQGAITEGLLGSGAQLDVIELDLDL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++ +F + ++ Q D +K F R +++ G +VV N+P+NIST +I
Sbjct: 69 IPILQGKFGDNPRFRLNQGDALKFD--------FARLEAAPGSLRVVGNLPYNISTPLIF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL + ++ +LQ+E R+
Sbjct: 121 HLLDNAPLIRDMHFMLQKEVVERM 144
>gi|104779701|ref|YP_606199.1| dimethyladenosine transferase [Pseudomonas entomophila L48]
gi|95108688|emb|CAK13382.1| S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase,
kasugamycin resistance [Pseudomonas entomophila L48]
Length = 266
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ I D++ A + G+ +LEIGPG G+LT LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++ +FA ++ Q D +K + L + ER KVV N+P+NIST +I
Sbjct: 70 VPILQHKFAGRGNFRLHQGDALKFDF--NQLGVPERS------LKVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL ++ ++ +LQ+E R+
Sbjct: 122 HLLAHANLIRDMHFMLQKEVVERM 145
>gi|410582405|ref|ZP_11319511.1| dimethyladenosine transferase [Thermaerobacter subterraneus DSM
13965]
gi|410505225|gb|EKP94734.1| dimethyladenosine transferase [Thermaerobacter subterraneus DSM
13965]
Length = 320
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 90/175 (51%), Gaps = 5/175 (2%)
Query: 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT 165
+ L G P + LGQ+++++ +++ AA D+V+E+GPG G+LT L
Sbjct: 27 RWLERYGVRPSRRLGQNFLVDDNWAERIVAAVEPGPDDLVIEVGPGLGALTERLAQRAGR 86
Query: 166 VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225
V A+E D+ + +RER + L++++ D + + L R+ + G K+ +N+
Sbjct: 87 VRAVEVDRRLAAALRERLGHLPNLELVEGDILAVDLD----RLASRQDPAGGPVKLASNL 142
Query: 226 PFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
P+ I++ + + L + VL LQ E RLV + ++ Y + +FV +++
Sbjct: 143 PYAITSPFLVRWLEAPIRWERAVLTLQAEVVDRLVA-APGSAAYGALTVFVAYHA 196
>gi|191639502|ref|YP_001988668.1| dimethyladenosine transferase [Lactobacillus casei BL23]
gi|409998367|ref|YP_006752768.1| ribosomal RNA small subunit methyltransferase A [Lactobacillus
casei W56]
gi|190713804|emb|CAQ67810.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N ,
N-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Lactobacillus
casei BL23]
gi|406359379|emb|CCK23649.1| Ribosomal RNA small subunit methyltransferase A [Lactobacillus
casei W56]
Length = 302
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ +S+I ++ AA + D V+EIGPG G+LT L ++ V+
Sbjct: 21 LKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADSAHQVV 80
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K + + + F+ + + KVVAN+P+
Sbjct: 81 ALEIDDRLLPILDETLADYPNATVVNEDVLKTDLGALVAEHFDGKHT----LKVVANLPY 136
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ LL + +++Q+E A RL + + EY ++I V +
Sbjct: 137 YITTPILLHLLRAQLPLHSMTVMMQKEVAERL-SATPGSKEYGSLSIAVQLVA 188
>gi|320095741|ref|ZP_08027390.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319977327|gb|EFW09021.1| dimethyladenosine transferase [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 301
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 12/158 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P K+LGQ+++ ++ ++ AAA V EGD V+E+GPG GSLT LL AGA V A+E D
Sbjct: 14 PTKALGQNFVHDAGTVRRIVAAAGVGEGDEVIEVGPGLGSLTLALLEAGARVRAVEIDPV 73
Query: 175 MVG----LVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
+ VR R + D+L V+ D + + + AK+VAN+P+N+
Sbjct: 74 LAAALPETVRARMGGAADRLHVVTADATAITGPADLGPDWPPP------AKLVANLPYNV 127
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRT 266
+ V+ +L ++V++++Q E A RL P RT
Sbjct: 128 AVPVLLAMLDSFPTLTDVLVMVQAEVADRLAAGPGSRT 165
>gi|281204745|gb|EFA78940.1| dimethyladenosine transferase [Polysphondylium pallidum PN500]
Length = 306
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 17/146 (11%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+ GQH + N I D + + ++ D VLEIGPGTG+LT LL + V+A+E D M
Sbjct: 34 KTFGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLESCKKVIAVEVDPRMA 93
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+++R A+ L+++ DF+K + F VAN+P+ IS+ +
Sbjct: 94 AELQKRVATTPYASHLEIILGDFLKVDL--------------PYFDVCVANVPYQISSPL 139
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL 259
+LL +F VL+ Q+E ALRL
Sbjct: 140 TFKLLAHRPVFRTAVLMFQKEFALRL 165
>gi|205372007|ref|ZP_03224825.1| dimethyladenosine transferase [Bacillus coahuilensis m4-4]
Length = 294
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 94/166 (56%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I + AA + + +E+GPG G+LT L + V++ E DQ +
Sbjct: 22 KKSLGQNFLIDPNILRNITEAAGLTKEFGAVEVGPGIGALTEHLARSAKKVVSFEIDQRL 81
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ + + D ++++ +DF+K + S + F S +VAN+P+ I+T +I
Sbjct: 82 VPILEDTLSPYDNVEIILQDFLKADVESVLREQF----SPDDPLMLVANLPYYITTPIIM 137
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
++L +V++LQ+E A R+ +P T EY ++I + +Y+
Sbjct: 138 RVLLERLPIDRIVVMLQKEVADRISAKPG--TKEYGSLSIAIQYYT 181
>gi|417987836|ref|ZP_12628389.1| dimethyladenosine transferase [Lactobacillus casei 32G]
gi|410522228|gb|EKP97177.1| dimethyladenosine transferase [Lactobacillus casei 32G]
Length = 298
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ +S+I ++ AA + D V+EIGPG G+LT L ++ V+
Sbjct: 17 LKRHGFHIRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADSAHQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K + + + F+ + + KVVAN+P+
Sbjct: 77 ALEIDDRLLPILDETLADYPNATVVNEDVLKTDLGALVAEHFDGKHT----LKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ LL + +++Q+E A RL + + EY ++I V +
Sbjct: 133 YITTPILLHLLRAQLPLHSMTVMMQKEVAERL-SATPGSKEYGSLSIAVQLVA 184
>gi|409418305|ref|ZP_11258303.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas sp. HYS]
Length = 268
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ + + G+ +LEIGPG G+LT+ LL +GA + +E D+ +
Sbjct: 10 RKRFGQNFLHDAGVIDRILRSIHAKAGERMLEIGPGQGALTSGLLASGAQLDVVELDKDL 69
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V ++ ++FA D ++ Q D +K F ++ +VV N+P+NIST +I
Sbjct: 70 VPILNQQFAGRDNFRLHQGDALKFD--------FTSLGAAPNSLRVVGNLPYNISTPLIF 121
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
LL ++ ++ +LQ+E RL
Sbjct: 122 HLLANAELIRDMHFMLQKEVVERL 145
>gi|381166246|ref|ZP_09875463.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Phaeospirillum
molischianum DSM 120]
gi|380684693|emb|CCG40275.1| Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase) [Phaeospirillum
molischianum DSM 120]
Length = 279
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 12/146 (8%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQH 174
RKSLGQH++ + + ++A AA V+EIGPG G LT LL+AGA V+AIE+D
Sbjct: 19 RKSLGQHFLFDLNLTGRIARAAGDLSVGTVIEIGPGPGGLTRALLDAGARQVIAIERDDR 78
Query: 175 MVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ + E A+ +L+++ D I + L RR +VAN+P+NIST +
Sbjct: 79 AIAIQDEIAAAYPGRLQIIAAD--ALEIDAATLGETPRR--------IVANLPYNISTVL 128
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRL 259
+ L + F +VL+ Q+E RL
Sbjct: 129 LLAWLRRAEAFERMVLMFQKEVVDRL 154
>gi|417990878|ref|ZP_12631339.1| dimethyladenosine transferase [Lactobacillus casei A2-362]
gi|417994208|ref|ZP_12634542.1| dimethyladenosine transferase [Lactobacillus casei CRF28]
gi|418000225|ref|ZP_12640421.1| dimethyladenosine transferase [Lactobacillus casei T71499]
gi|410530524|gb|EKQ05297.1| dimethyladenosine transferase [Lactobacillus casei CRF28]
gi|410533320|gb|EKQ08001.1| dimethyladenosine transferase [Lactobacillus casei A2-362]
gi|410537145|gb|EKQ11724.1| dimethyladenosine transferase [Lactobacillus casei T71499]
Length = 298
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ +S+I ++ AA + D V+EIGPG G+LT L ++ V+
Sbjct: 17 LKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADSAHQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K + + + F+ + + KVVAN+P+
Sbjct: 77 ALEIDDRLLPILDETLADYPNATVVNEDVLKTDLGALVAEHFDGKHT----LKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ LL + +++Q+E A RL + + EY ++I V +
Sbjct: 133 YITTPILLHLLRAQLPLHSMTVMMQKEVAERL-SATPGSKEYGSLSIAVQLVA 184
>gi|303327382|ref|ZP_07357823.1| dimethyladenosine transferase [Desulfovibrio sp. 3_1_syn3]
gi|345891751|ref|ZP_08842588.1| dimethyladenosine transferase [Desulfovibrio sp. 6_1_46AFAA]
gi|302862322|gb|EFL85255.1| dimethyladenosine transferase [Desulfovibrio sp. 3_1_syn3]
gi|345047964|gb|EGW51813.1| dimethyladenosine transferase [Desulfovibrio sp. 6_1_46AFAA]
Length = 274
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQH 174
+KSLGQH++ EI D++AA Q D VLEIGPG G+LT L A A +L +EKD+H
Sbjct: 15 KKSLGQHFLRREEICDRIAALLLPQAEDRVLEIGPGPGALTRALEAAPHACLLLLEKDRH 74
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
R+R A+ VL + L RR S KV+ N+P+N+++ +I
Sbjct: 75 WAA-ERQRQAAPRTQAVL----------TDALRFDWRRISPEHPWKVIGNLPYNVASPLI 123
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
++ + V ++Q+E RL + Y ++++V Y+
Sbjct: 124 WDIVSRAEGLKRAVFMVQKEVGQRLAA-APGNGHYGALSVWVQSYA 168
>gi|355571047|ref|ZP_09042317.1| Ribosomal RNA small subunit methyltransferase A [Methanolinea tarda
NOBI-1]
gi|354826329|gb|EHF10545.1| Ribosomal RNA small subunit methyltransferase A [Methanolinea tarda
NOBI-1]
Length = 256
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 21/162 (12%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
QH++++ + +++A V EG VLE+GPG GSLT LL GA V+A+E D +V ++
Sbjct: 7 QHFLVDRKAIERIAGIIRV-EGRTVLEVGPGRGSLTEALLERGARVVAVEIDPGLVEMLS 65
Query: 181 ERF---ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237
ERF ++L V+ D V C + GF VV+N+P++ S+ + +L
Sbjct: 66 ERFLREIGENRLVVVHGDAVSCPL--------------PGFDVVVSNLPYSASSKITFRL 111
Query: 238 LPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
L G F E VL+ Q E A R++ P+ T E +++ V Y
Sbjct: 112 LETG--FEEAVLMYQSEFADRMLAPA-GTPECGRLSVMVQTY 150
>gi|86605619|ref|YP_474382.1| dimethyladenosine transferase [Synechococcus sp. JA-3-3Ab]
gi|119365853|sp|Q2JVW2.1|RSMA_SYNJA RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|86554161|gb|ABC99119.1| dimethyladenosine transferase [Synechococcus sp. JA-3-3Ab]
Length = 279
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 86/154 (55%), Gaps = 21/154 (13%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAGATVLAI 169
+PRK GQH++ + +++ + AA + ++ VLEIGPGTG LT LL G V+A+
Sbjct: 3 YPRKRFGQHWLKDPAVHEAIVRAAQLPPPQRDPAWVLEIGPGTGQLTQRLLAQGVHVVAV 62
Query: 170 EKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
E D+ + L+++RFA + +++ DF++ +VANIP+N+
Sbjct: 63 EIDRDLCRLLQKRFADQPRFHLVEGDFLRL-------------PLPPQPRLLVANIPYNL 109
Query: 230 STDVIKQLL--PMGDI--FSEVVLLLQEETALRL 259
+ +++++L P + F +VL++Q+E A RL
Sbjct: 110 TGPILEKVLGSPAQPVRQFERIVLMVQKELAERL 143
>gi|326202941|ref|ZP_08192808.1| dimethyladenosine transferase [Clostridium papyrosolvens DSM 2782]
gi|325987018|gb|EGD47847.1| dimethyladenosine transferase [Clostridium papyrosolvens DSM 2782]
Length = 285
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K+LGQ+++ + + ++ A+ + + + +EIGPG GS+T L A V AIE D+ ++
Sbjct: 19 KALGQNFLTDFGVVQRIVDASDIDKDTLAIEIGPGVGSMTRELAERSAGVAAIEIDKRLI 78
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+ + + + ++ ED +K I + + E + S KVVAN+P+ I+T +I +
Sbjct: 79 PALNDNLSDYSNVSIINEDIMKADIDAIIKKYKELYNAKS--VKVVANLPYYITTPIIMR 136
Query: 237 LLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
L ++V ++Q+E A R+V P T +Y +++ V FYS
Sbjct: 137 FLEEVKGVDKMVFMVQKEVAERMVSGPG--TKDYGALSVAVQFYS 179
>gi|92117868|ref|YP_577597.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14]
gi|119365039|sp|Q1QKW0.1|RSMA_NITHX RecName: Full=Ribosomal RNA small subunit methyltransferase A;
AltName: Full=16S rRNA
(adenine(1518)-N(6)/adenine(1519)-N(6))-
dimethyltransferase; AltName: Full=16S rRNA
dimethyladenosine transferase; AltName: Full=16S rRNA
dimethylase; AltName: Full=S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase
gi|91800762|gb|ABE63137.1| dimethyladenosine transferase [Nitrobacter hamburgensis X14]
Length = 287
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 18/152 (11%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQH 174
RKSLGQ+++L+ + ++A AA E V+EIGPG G LT LL GA V+AIE+D
Sbjct: 22 RKSLGQNFLLDLNLTARIARAAGPLEDATVIEIGPGPGGLTRALLAMGAQRVIAIERDAR 81
Query: 175 MVGLVRE---RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
+G + E R+ +L ++ D + R + + AK+VAN+P+NI+T
Sbjct: 82 ALGALEEISGRYPG--RLTIVNADATQFDSRPLL---------GTTRAKIVANLPYNIAT 130
Query: 232 DVIKQLL---PMGDIFSEVVLLLQEETALRLV 260
++ L P + +VL+ Q E A R+V
Sbjct: 131 ALLIDWLSVEPWPPWYDTMVLMFQREVAERIV 162
>gi|342181400|emb|CCC90879.1| conserved putative ribosomal RNA adenine dimethylase family protein
[Trypanosoma congolense IL3000]
Length = 344
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 75/143 (52%), Gaps = 12/143 (8%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQH + N + + AAV+ DIVLEIGPGTG+LT LL A V+A E D MV
Sbjct: 64 KGFGQHILKNPLVIAAIVEKAAVKATDIVLEIGPGTGNLTEKLLQAAKKVIAFEVDPRMV 123
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+ +RF + LQ V+ + H F+ K VAN+P+ IS+ ++ +
Sbjct: 124 VELNKRFQNSPLAAKLQ--VVRGNCLDHEFPYFD---------KCVANVPYAISSALVFK 172
Query: 237 LLPMGDIFSEVVLLLQEETALRL 259
LL + F VL+ Q E ALR+
Sbjct: 173 LLKKPN-FKCAVLMFQREFALRV 194
>gi|148907015|gb|ABR16651.1| unknown [Picea sitchensis]
Length = 346
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KS GQH + N + + A ++ DIVLEIGPGTG+LT LL V+A+E D M
Sbjct: 24 QKSKGQHILKNPMLVQTIVQKAGIKSTDIVLEIGPGTGNLTMKLLEVAKKVIAVELDPRM 83
Query: 176 VGLVRERF---ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232
V ++ R +S +L+V+Q D +K + F VANIP+ IS+
Sbjct: 84 VLELQRRVQGTSSAIRLQVIQGDVLKSEL--------------PYFDVCVANIPYQISSP 129
Query: 233 VIKQLLPMGDIFSEVVLLLQEETALRLV 260
+ +LL IF +++ Q E A+RLV
Sbjct: 130 LTFKLLSHRPIFRCAIIMFQREFAMRLV 157
>gi|325912354|ref|ZP_08174750.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D]
gi|325475825|gb|EGC78995.1| dimethyladenosine transferase [Lactobacillus iners UPII 143-D]
Length = 295
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++++ I ++ A+A V E V+EIGPG GSLT LL AGA VLA E D +
Sbjct: 25 KKSLGQNFLVDLPIVKKIIASAGVVECSQVIEIGPGIGSLTEQLLLAGAKVLAYEVDPDL 84
Query: 176 VG-LVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
L E A I D+ +++ +D +K + + F+ + VVAN+P+
Sbjct: 85 PDILYNELPAQIGNYELNDRFRIIMKDILKADFATDIADYFDVNQP----IIVVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I +L+ S++ L++Q+E A R + + ++ Y P+ I V
Sbjct: 141 ITTPIILKLMHSPIKISQLTLMMQKEVAER-ISAAHKSKAYGPLTIAV 187
>gi|428770146|ref|YP_007161936.1| dimethyladenosine transferase [Cyanobacterium aponinum PCC 10605]
gi|428684425|gb|AFZ53892.1| dimethyladenosine transferase [Cyanobacterium aponinum PCC 10605]
Length = 285
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 18/163 (11%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQ--------EGDIVLEIGPGTGSLTNVLLNAGATV 166
PRK GQH++ + + D + +A + +GD +LEIGPGTG LT LL +
Sbjct: 5 PRKQFGQHWLKSQKALDTIIFSAELNKSNPQTGTQGDRILEIGPGTGVLTKRLLPLVDKL 64
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
LA+E D+ + + + D +L+ DF++ ++ +L F + KVVANIP
Sbjct: 65 LAVEIDRDLCKKLVNDYGKTDNFLLLEGDFLELNL-PEILQPFP---DFLAYNKVVANIP 120
Query: 227 FNISTDVIKQLL-----PMGDIFSEVVLLLQEETALRLV-EPS 263
+NI+ +I++LL P +VLL+Q+E RL EP+
Sbjct: 121 YNITGPIIEKLLGTISKPAEKQLDAIVLLIQKEVGERLTAEPN 163
>gi|255348718|ref|ZP_05380725.1| dimethyladenosine transferase [Chlamydia trachomatis 70]
gi|255503258|ref|ZP_05381648.1| dimethyladenosine transferase [Chlamydia trachomatis 70s]
Length = 277
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 106/189 (56%), Gaps = 18/189 (9%)
Query: 94 ARSQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTG 153
ARS + + ++++N GR +K+L Q+++++ I ++ A VQ GD VLEIGPG G
Sbjct: 2 ARSSIEQLTSFLRSVN--GRV-KKALSQNFLVDGNILRKILTTAEVQPGDWVLEIGPGFG 58
Query: 154 SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213
+L+ VLL+ GA V+A+EKD S+ QL + E C + L+ E K
Sbjct: 59 ALSEVLLSQGANVIALEKDPMFE-------ESLSQLPMDIEITDACE---YPLTSLE-DK 107
Query: 214 SSSGFAKVVANIPFNISTDVI-KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRP 271
G ++VAN+P++I+T ++ K L + V +++Q+E A R+ +P +Y
Sbjct: 108 GWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPG--DKDYGS 165
Query: 272 INIFVNFYS 280
+ +F++F++
Sbjct: 166 LTVFLSFFA 174
>gi|397688223|ref|YP_006525542.1| KsgA/Dim1 family 16S ribosomal RNA methyltransferase [Pseudomonas
stutzeri DSM 10701]
gi|395809779|gb|AFN79184.1| 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein
[Pseudomonas stutzeri DSM 10701]
Length = 267
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQ+++ ++ + D++ A + G+ ++EIGPG G+LT LL +GA + +E D +
Sbjct: 9 RKRFGQNFLHDAGVIDRILRAIHAKPGEQLVEIGPGQGALTEGLLGSGANLNVVELDLDL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +++ +FA + + Q D +K F R + G +VV N+P+NIST +I
Sbjct: 69 IPILQGKFAGHENFSLHQGDALKFD--------FARLSETPGSLRVVGNLPYNISTPLIF 120
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
LL + ++ +LQ+E RL +P ++ ++I V ++
Sbjct: 121 HLLDHARLIRDMHFMLQKEVVERLAAQPG--GGDWGRLSIMVQYH 163
>gi|294496912|ref|YP_003560612.1| dimethyladenosine transferase [Bacillus megaterium QM B1551]
gi|294346849|gb|ADE67178.1| dimethyladenosine transferase [Bacillus megaterium QM B1551]
Length = 292
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I ++ A + E +EIGPG G+LT L VLA E DQ +
Sbjct: 23 KKSLGQNFLIDTNILHRIVDHAEITEETGAIEIGPGIGALTEQLAKRAKKVLAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + KV+ +D +K ++ + FE + VVAN+P+ ++T ++
Sbjct: 83 LPILADTLSPYSNAKVIHQDVLKADLKGTLEQEFENIED----LMVVANLPYYVTTPILM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
+LL +V++LQ+E A R+ +P T EY ++I + +Y+
Sbjct: 139 KLLEEQIPVRGIVVMLQKEVADRIAAKPG--TKEYGSLSIAIQYYT 182
>gi|418006241|ref|ZP_12646200.1| dimethyladenosine transferase [Lactobacillus casei UW1]
gi|410544165|gb|EKQ18501.1| dimethyladenosine transferase [Lactobacillus casei UW1]
Length = 298
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ +S+I ++ AA + D V+EIGPG G+LT L ++ V+
Sbjct: 17 LKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADSAHQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K + + + F+ + + KVVAN+P+
Sbjct: 77 ALEIDDRLLPILDETLADYPNAMVVNEDVLKTDLGALVAEHFDGKHT----LKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ LL + +++Q+E A RL + + EY ++I V +
Sbjct: 133 YITTPILLHLLRAQLPLHSMTVMMQKEVAERL-SATPGSKEYGSLSIAVQLVA 184
>gi|407006285|gb|EKE22227.1| dimethyladenosine transferase, partial [uncultured bacterium]
Length = 237
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PR LGQH++ N I Q+ ++ +++ + +LEIGPG G LT L V+A+E D
Sbjct: 2 PR-YLGQHFLNNPAIVTQIVDSSQIKKDETILEIGPGEGILTERLCQKARRVIAVELDTK 60
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++ ++F+ + ++ ED +K ++ L +K K++ANIP+ I++ +I
Sbjct: 61 LKTILEKKFSQQKNIDLIFEDILKI----NLPQLLNEKKIDK--YKIIANIPYYITSKII 114
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267
+ L E++L++Q+E A R+V P + S
Sbjct: 115 RLFLETARQPDELILMVQKEVAQRIVAPKGKMS 147
>gi|418009077|ref|ZP_12648918.1| dimethyladenosine transferase [Lactobacillus casei UW4]
gi|410544759|gb|EKQ19076.1| dimethyladenosine transferase [Lactobacillus casei UW4]
Length = 298
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G RK LGQ+++ +S+I ++ AA + D V+EIGPG G+LT L ++ V+
Sbjct: 17 LKRHGFHMRKGLGQNFLTDSKILQKIVTAADLTPEDDVIEIGPGIGALTQFLADSAHQVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+E D ++ ++ E A V+ ED +K + + + F+ + + KVVAN+P+
Sbjct: 77 ALEIDDRLLPILDETLADYPNAMVVNEDVLKTDLGALVAEHFDGKHT----LKVVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ LL + +++Q+E A RL + + EY ++I V +
Sbjct: 133 YITTPILLHLLRAQLPLHSMTVMMQKEVAERL-SATPGSKEYGSLSIAVQLVA 184
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,955,862,418
Number of Sequences: 23463169
Number of extensions: 153523014
Number of successful extensions: 456428
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4781
Number of HSP's successfully gapped in prelim test: 951
Number of HSP's that attempted gapping in prelim test: 446539
Number of HSP's gapped (non-prelim): 5926
length of query: 281
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 140
effective length of database: 9,050,888,538
effective search space: 1267124395320
effective search space used: 1267124395320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)