BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023482
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 16/143 (11%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
GQH + N I D++ AA ++ DIVLEIG GTG+LT LL V+ I+ D M+ V
Sbjct: 21 GQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEV 80
Query: 180 RER--FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237
++R + + L+V + D +K ++F + F ANIP+ IS+ +I +L
Sbjct: 81 KKRCLYEGYNNLEVYEGDAIK--------TVFPK------FDVCTANIPYKISSPLIFKL 126
Query: 238 LPMGDIFSEVVLLLQEETALRLV 260
+ +F VL+ Q+E A R++
Sbjct: 127 ISHRPLFKCAVLMFQKEFAERML 149
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178
+GQH + N I + + AA++ D+VLE+GPGTG++T LL V+A E D +V
Sbjct: 6 IGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAE 65
Query: 179 VRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ +R +L+VL D +K + F VAN+P+ IS+ +
Sbjct: 66 LHKRVQGTPVASKLQVLVGDVLKTDL--------------PFFDTCVANLPYQISSPFVF 111
Query: 236 QLLPMGDIFSEVVLLLQEETALRLV 260
+LL F +L+ Q E ALRLV
Sbjct: 112 KLLLHRPFFRCAILMFQREFALRLV 136
>pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With Adenosine In Space Group P212121
pdb|3FUV|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|C Chain C, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUW|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|B Chain B, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|C Chain C, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
Length = 271
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G F K GQ+++++ ++ AA G V E+GPG G+LT LL AGA V
Sbjct: 14 LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVT 72
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
AIEKD + ++ E + + V Q+ L+ + G + +VAN+P+
Sbjct: 73 AIEKDLRLRPVLEETLSGLPVRLVFQDAL-----------LYPWEEVPQG-SLLVANLPY 120
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL 259
+I+T ++ +LL G F+ +V L+Q+E A R+
Sbjct: 121 HIATPLVTRLLKTGR-FARLVFLVQKEVAERM 151
>pdb|3UZU|A Chain A, The Structure Of The Ribosomal Rna Small Subunit
Methyltransferase A From Burkholderia Pseudomallei
Length = 279
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNV----LLNAGATV 166
+G F RK GQ+++++ + D + AA + G+ ++EIGPG G+LT L G+ +
Sbjct: 12 QGHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPL 71
Query: 167 LAIEKDQHMVGLVRERFASIDQL---KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
A+E D+ ++G + +RF + +L L DF R +++
Sbjct: 72 HAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSI-----------ARPGDEPSLRIIG 120
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRT 266
N+P+NIS+ ++ L+ + + +LQ E R+V EP +
Sbjct: 121 NLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPGTKA 164
>pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
pdb|3FUT|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
Length = 271
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G F K GQ+++++ ++ AA G V E+GPG G+LT LL AGA V
Sbjct: 14 LERHGLFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVT 72
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
AIEKD + ++ E + + V Q+ L+ + G + +VAN+P+
Sbjct: 73 AIEKDLRLRPVLEETLSGLPVRLVFQDAL-----------LYPWEEVPQG-SLLVANLPY 120
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALR 258
+I+T ++ +LL G F+ +V L+Q+E A R
Sbjct: 121 HIATPLVTRLLKTGR-FARLVFLVQKEVAER 150
>pdb|3TQS|A Chain A, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|B Chain B, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|C Chain C, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|D Chain D, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
Length = 255
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ +S + ++ +A Q+ D ++EIGPG G+LT+ LL + +E D+ +
Sbjct: 4 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V +++++ + + Q D ++ F K+ +VV N+P+NIST ++
Sbjct: 64 VAFLQKKYNQQKNITIYQNDALQFD--------FSSVKTDKPL-RVVGNLPYNISTPLLF 114
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
L + LQ+E R+
Sbjct: 115 HLFSQIHCIEDXHFXLQKEVVRRI 138
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 24/150 (16%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
+KS GQH +++ + ++A ++EG+ V+E+G GTG+LT VLL L IE D+
Sbjct: 5 KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 64
Query: 175 MVGLVRERFASI--DQLKVLQED---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
MV E SI ++L+V+ ED F C + + KVV N+P+N+
Sbjct: 65 MV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNV 106
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRL 259
++ +I+ + D V ++Q+E A +L
Sbjct: 107 ASLIIENTVYNKDCVPLAVFMVQKEVAEKL 136
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 24/150 (16%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQH 174
+KS GQH +++ + ++A ++EG+ V+E+G GTG+LT VLL L IE D+
Sbjct: 6 KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE 65
Query: 175 MVGLVRERFASI--DQLKVLQED---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229
MV E SI ++L+V+ ED F C + + KVV N+P+N+
Sbjct: 66 MV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNV 107
Query: 230 STDVIKQLLPMGDIFSEVVLLLQEETALRL 259
++ +I+ + D V ++Q+E A +L
Sbjct: 108 ASLIIENTVYNKDCVPLAVFMVQKEVAEKL 137
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 14/146 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K LGQ ++++ ++ +A + + D+VLEIG G G LT L V IE D+
Sbjct: 24 PKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKS 83
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + ++++ D +K + + F KVVAN+P+ IS+ +
Sbjct: 84 LEPYANKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPIT 131
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV 260
+L+ G F VL+ Q E A R+V
Sbjct: 132 FKLIKRG--FDLAVLMYQYEFAKRMV 155
>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
Length = 244
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLK 190
D++ + E D + EIG G G T L+ V AIE D + + D +
Sbjct: 20 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQ 79
Query: 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLL 250
VL +D ++ F+ K+ S K+ NIP+NISTD+I++++ I E+ L+
Sbjct: 80 VLNKDILQ----------FKFPKNQS--YKIFGNIPYNISTDIIRKIV-FDSIADEIYLI 126
Query: 251 LQEETALRLV 260
++ A RL+
Sbjct: 127 VEYGFAKRLL 136
>pdb|3TPZ|A Chain A, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
pdb|3TPZ|B Chain B, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
Length = 273
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
+G RK GQ+++ + + D + +A Q+G ++EIGPG +LT + + IE
Sbjct: 7 QGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIE 66
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
D+ + ++ +L + Q+D + + E + +V N P+NIS
Sbjct: 67 LDRDLAARLQTHPFLGPKLTIYQQD-------AMTFNFGELAEKMGQPLRVFGNPPYNIS 119
Query: 231 TDVIKQLLPMGDIFSEVVLLLQEETALRLV 260
T ++ L D +++ +LQ+E RLV
Sbjct: 120 TPLMFHLFSYTDAIADMHFMLQKEVVNRLV 149
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
Q+++ + ++ +Q+ ++E D V EIG G G LT L V +IE D H+ L
Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLS 67
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
E+ ++ ++ +D ++ F ++ K+V NIP+++ST +IK+++
Sbjct: 68 SEKLKLNTRVTLIHQDILQFQ--------FPNKQR----YKIVGNIPYHLSTQIIKKVV- 114
Query: 240 MGDIFSEVVLLLQE 253
S++ L+++E
Sbjct: 115 FESRASDIYLIVEE 128
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLV 179
Q ++++ ++ +A + + D+VLEIG G G LT L V IE D+ +
Sbjct: 2 AQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYA 61
Query: 180 RERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239
+ + ++++ D +K + + F KVVAN+P+ IS+ + +L+
Sbjct: 62 NKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIK 109
Query: 240 MGDIFSEVVLLLQEETALRLV 260
G F VL+ Q E A R+V
Sbjct: 110 RG--FDLAVLMYQYEFAKRMV 128
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
Q ++++ ++ +A + + D+VLEIG G G LT L V IE D+ +
Sbjct: 1 QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYAN 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
+ + ++++ D +K + + F KVVAN+P+ IS+ + +L+
Sbjct: 61 KLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIKR 108
Query: 241 GDIFSEVVLLLQEETALRLV 260
G F VL+ Q E A R+V
Sbjct: 109 G--FDLAVLMYQYEFAKRMV 126
>pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|1QYR|B Chain B, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|4ADV|V Chain V, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
Length = 252
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 7/140 (5%)
Query: 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180
Q+++ + + D + +A Q+G ++EIGPG +LT + + IE D+ + ++
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60
Query: 181 ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPM 240
+L + Q+D + + E + +V N+P+NIST ++ L
Sbjct: 61 THPFLGPKLTIYQQD-------AMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSY 113
Query: 241 GDIFSEVVLLLQEETALRLV 260
D +++ +LQ+E RLV
Sbjct: 114 TDAIADMHFMLQKEVVNRLV 133
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201
VLE G GTG+LTN LL AG TV IE + M + +E+ + + + DF+ +
Sbjct: 49 VLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPK--EFSITEGDFLSFEV 103
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 128 EINDQLAAAAAVQ-----EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
E+ Q+A A A E + LE+G GTG + L+ G +A++ D + + R++
Sbjct: 21 EVAGQIATAXASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAXLEVFRQK 80
Query: 183 FASID-QLKVLQED 195
A +D +++V+Q D
Sbjct: 81 IAGVDRKVQVVQAD 94
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI 186
Q G+ +L++G GTG LT + +GA VL + + R+ + +
Sbjct: 56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATXIEKARQNYPHL 102
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQL-KVLQEDFVKCH 200
G VL++G G G+LT L GA V+ +E D AS+ L K L+ + +K
Sbjct: 234 GRQVLDLGAGYGALTLPLARMGAEVVGVEDD----------LASVLSLQKGLEANALKAQ 283
Query: 201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E + F +V N PF++ VI
Sbjct: 284 ALHSDVD--EALTEEARFDIIVTNPPFHVGGAVI 315
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQL-KVLQEDFVKCH 200
G VL++G G G+LT L GA V+ +E D AS+ L K L+ + +K
Sbjct: 234 GRQVLDLGAGYGALTLPLARMGAEVVGVEDD----------LASVLSLQKGLEANALKAQ 283
Query: 201 IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E + F +V N PF++ VI
Sbjct: 284 ALHSDVD--EALTEEARFDIIVTNPPFHVGGAVI 315
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+ A A + GD ++E G G+G+LT L N
Sbjct: 85 IVAYAGISPGDFIVEAGVGSGALTLFLAN 113
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+ A A + GD ++E G G+G+LT L N
Sbjct: 85 IVAYAGISPGDFIVEAGVGSGALTLFLAN 113
>pdb|3H2B|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
pdb|3H2B|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
Length = 203
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI 186
++L++G GTG T L + G + +E +V L R+ S+
Sbjct: 44 VILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSV 86
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI 186
+A V+EGD +++ G G+G++ VL A V A EK RE FA +
Sbjct: 104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEK--------REEFAKL 152
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 135 AAAAVQEGDI-----VLEIGPGTGSLTNVLLNA 162
AA V EGDI VLE G G+G+LT LL A
Sbjct: 88 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRA 120
>pdb|3DOU|A Chain A, Crystal Structure Of Methyltransferase Involved In Cell
Division From Thermoplasma Volcanicum Gss1
Length = 191
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
V++GD V+EIG G T VL + +++I+
Sbjct: 23 VRKGDAVIEIGSSPGGWTQVLNSLARKIISID 54
>pdb|3G2M|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa
pdb|3G2M|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa
Length = 299
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
VLE+ G G LT L+ G V A+E ++ R+R A
Sbjct: 86 VLELAAGXGRLTFPFLDLGWEVTALELSTSVLAAFRKRLA 125
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
+G ++ +IG GTG + L N G V A+E
Sbjct: 34 KGSVIADIGAGTGGYSVALANQGLFVYAVE 63
>pdb|3G2O|A Chain A, Crystal Structure Of The Glycopeptide N-methyltransferase
Mtfa Complexed With (s)-adenosyl-l-methionine (sam)
pdb|3G2O|B Chain B, Crystal Structure Of The Glycopeptide N-methyltransferase
Mtfa Complexed With (s)-adenosyl-l-methionine (sam)
pdb|3G2P|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With (S)-Adenosyl-L-Homocysteine (Sah)
pdb|3G2P|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With (S)-Adenosyl-L-Homocysteine (Sah)
pdb|3G2Q|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With Sinefungin
pdb|3G2Q|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With Sinefungin
Length = 299
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184
VLE+ G G LT L+ G V A+E ++ R+R A
Sbjct: 86 VLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLA 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,312,444
Number of Sequences: 62578
Number of extensions: 272758
Number of successful extensions: 927
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 879
Number of HSP's gapped (non-prelim): 37
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)