BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023482
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ME80|RSMA_PARUW Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia
amoebophila (strain UWE25) GN=rsmA PE=3 SV=2
Length = 284
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 104/177 (58%), Gaps = 13/177 (7%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G FP+K L Q+++++ I ++ A+ VQ G++VLEIGPG GSLT +L A V+
Sbjct: 13 LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVV 72
Query: 168 AIEKDQHMVGLVRE--RFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
A+EKD L RE RF + QL++ ED + + + S R AKV+AN
Sbjct: 73 AVEKD---FVLARELKRFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYS 280
+P++++T ++ +++ +FS + +++QEE A R+ P S+Y IF+NFYS
Sbjct: 126 LPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPG--QSDYSSFTIFLNFYS 180
>sp|B8D0I2|RSMA_HALOH Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix
orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3
SV=1
Length = 301
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 5/163 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ I D++ A + DIV+EIGPG GSLT ++ V A EKD+ +V
Sbjct: 24 KGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLV 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++RE F + L+V+ +D ++ + F+ R S KV+AN+P+ I+T VI
Sbjct: 84 KVLRELFNGYNHLEVIGQDVLEVDWK----HFFDSRGISDRSVKVLANLPYYITTPVIMG 139
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFY 279
LL FS +VL++Q+E A R+ + + +Y +++ V +Y
Sbjct: 140 LLESNITFSLMVLMVQKEVADRMA-AAPGSKDYGALSVAVQYY 181
>sp|Q8DND3|RSMA_STRR6 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=rsmA PE=3 SV=1
Length = 290
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q04II4|RSMA_STRP2 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rsmA
PE=3 SV=1
Length = 290
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|C1CMT3|RSMA_STRZP Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain P1031) GN=rsmA PE=3 SV=1
Length = 290
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q5N2S8|RSMA_SYNP6 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rsmA
PE=3 SV=1
Length = 279
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 9/149 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + I D++ AAA ++ D VLEIGPG G+LT LL A ++A+E D+ +
Sbjct: 4 RKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLAAVDGLVAVELDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+G +++RF + +L+ D ++ + + R + +KVVANIP+NI+ +++
Sbjct: 64 IGQLQQRFGQAENFCLLEGDILQLDWTAAIAD----RPRFANPSKVVANIPYNITGPILQ 119
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL 259
LL P F +VLL+Q+E A RL
Sbjct: 120 SLLGTIAQPRRPAFERLVLLVQQEVADRL 148
>sp|Q31RH6|RSMA_SYNE7 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus
elongatus (strain PCC 7942) GN=rsmA PE=3 SV=1
Length = 279
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 9/149 (6%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK GQH++ + I D++ AAA ++ D VLEIGPG G+LT LL A ++A+E D+ +
Sbjct: 4 RKRFGQHWLRSEAILDRIVAAAELRPSDRVLEIGPGRGALTQRLLAAVDGLVAVELDRDL 63
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+G +++RF + +L+ D ++ + + R + +KVVANIP+NI+ +++
Sbjct: 64 IGQLQQRFGQAENFCLLEGDILQLDWTAAIAD----RPRFANPSKVVANIPYNITGPILQ 119
Query: 236 QLL-----PMGDIFSEVVLLLQEETALRL 259
LL P F +VLL+Q+E A RL
Sbjct: 120 SLLGTIAQPRRPAFERLVLLVQQEVADRL 148
>sp|Q8TWU7|RSMA_METKA Probable ribosomal RNA small subunit methyltransferase A
OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM
9639 / NBRC 100938) GN=rsmA PE=3 SV=1
Length = 278
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 19/175 (10%)
Query: 108 LNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATV 166
L SK G PR+ LGQH+M++ I + + AA V+E DIVLEIGPG G LT L+ V
Sbjct: 10 LRSKYGIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTRAGQV 69
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
+A+E D MV +++ L++++ DF++ + KVVANIP
Sbjct: 70 IAVELDGRMVEILKRELGEAPNLEIVRADFLEYDV-------------PDDVNKVVANIP 116
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
+NIS+ + +LL + VL Q E A R+V EP + +Y + + VN +
Sbjct: 117 YNISSPITFKLLELD--IDVAVLTYQREFAERMVAEPG--SKKYSRLTVMVNLLA 167
>sp|Q2RME8|RSMA_MOOTA Ribosomal RNA small subunit methyltransferase A OS=Moorella
thermoacetica (strain ATCC 39073) GN=rsmA PE=3 SV=1
Length = 288
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 3/178 (1%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T+ + KG PRKS GQ++++++ I ++A AA V GD V+EIGPG G+LT L
Sbjct: 10 TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+AIE D+ + + E A D ++++ D +K + + + KVVA
Sbjct: 70 GLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVA 129
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYS 280
N+P+ I+T ++ LL +E+VL++Q E R L P +Y +++ V +Y+
Sbjct: 130 NLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPG--GKDYGALSVVVQYYT 185
>sp|B1XIV9|RSMA_SYNP2 Ribosomal RNA small subunit methyltransferase A OS=Synechococcus
sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rsmA PE=3
SV=1
Length = 273
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 9/151 (5%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK GQH++ + +I D++ AAA +Q D VLEIGPG G+LT+ LL +L++E D+
Sbjct: 3 PRKRFGQHWLTDQQILDEIVAAANLQPTDRVLEIGPGKGALTSRLLPQVEALLSVEIDRD 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ + + + +L+ D+++ I + L F + ++ KVVANIP+NI+ ++
Sbjct: 63 LCKYMVKNYGDRPNFLLLEADYLQTDI-NEFLGDFPQFQNPR---KVVANIPYNITGPIL 118
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV 260
++LL P + F +VLL+Q+E RLV
Sbjct: 119 EKLLGTIDRPNSNPFESIVLLIQKEVGDRLV 149
>sp|B2IM67|RSMA_STRPS Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain CGSP14) GN=rsmA PE=3 SV=1
Length = 290
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+ E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMTFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|C1CA29|RSMA_STRP7 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain 70585) GN=rsmA PE=3 SV=1
Length = 290
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q65PH9|RSMA_BACLD Ribosomal RNA small subunit methyltransferase A OS=Bacillus
licheniformis (strain DSM 13 / ATCC 14580) GN=rsmA PE=3
SV=1
Length = 292
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 7/178 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + LN G +KSLGQ++++++ I D++ A V E V+EIGPG G+LT L
Sbjct: 11 TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A E DQ ++ ++ + + D + V+ +D +K +R+ M F+ VVA
Sbjct: 71 KKVTAFEIDQRLLPILEDTLSPYDNVTVIHQDVLKADVRAVMDEQFQ----DCDEVMVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYS 280
N+P+ ++T +I +LL +V++LQ+E A R+ +PS + EY ++I V FY+
Sbjct: 127 NLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYT 182
>sp|C1CTN9|RSMA_STRZT Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain Taiwan19F-14) GN=rsmA PE=3 SV=1
Length = 290
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q97NN5|RSMA_STRPN Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=rsmA PE=3 SV=2
Length = 290
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|B8ZNY9|RSMA_STRPJ Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rsmA
PE=3 SV=1
Length = 290
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|B1I8T7|RSMA_STRPI Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain Hungary19A-6) GN=rsmA PE=3 SV=1
Length = 290
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|B5E2H6|RSMA_STRP4 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae serotype 19F (strain G54) GN=rsmA PE=3 SV=1
Length = 290
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q181C1|RSMA_CLOD6 Ribosomal RNA small subunit methyltransferase A OS=Clostridium
difficile (strain 630) GN=rsmA PE=3 SV=1
Length = 289
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 106/180 (58%), Gaps = 9/180 (5%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + K F KSLGQ+++++S I D++ + A + GD ++E+GPG G+LT +
Sbjct: 7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D++++ ++++ + +D +V+ +D +K I+ + + K + G K
Sbjct: 67 KIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQDILKVDIQELV-----KDKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ P T +Y ++I V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAIPG--TKDYGALSIAVQYY 179
>sp|C1CGR5|RSMA_STRZJ Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain JJA) GN=rsmA PE=3 SV=1
Length = 290
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLMPILADTLRDFDNVTVVNEDILKVDLAQHI----QNFKNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q74C12|RSMA_GEOSL Ribosomal RNA small subunit methyltransferase A OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=rsmA PE=3 SV=1
Length = 276
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 85/144 (59%), Gaps = 6/144 (4%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
RK+LGQ+++ + + ++AA + G+ +LEIGPG G+LT+ L ++A+E D +
Sbjct: 9 RKALGQNFLTDRSVLSRIAALVSAGAGERILEIGPGKGALTSYLAEQAGQLVAVELDDRL 68
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
V L+R FA + +++ D + +R + + + KV AN+P+NIST V+
Sbjct: 69 VPLLRGSFAGNPSVTIIEGDILDLDLRETL------GRYGTPPWKVAANLPYNISTPVLF 122
Query: 236 QLLPMGDIFSEVVLLLQEETALRL 259
+LL D+FS +VL+LQ+E RL
Sbjct: 123 RLLDARDLFSRLVLMLQKEVGNRL 146
>sp|A3CQN5|RSMA_STRSV Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
sanguinis (strain SK36) GN=rsmA PE=3 SV=1
Length = 290
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K ++ ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVNLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|B0CC89|RSMA_ACAM1 Ribosomal RNA small subunit methyltransferase A OS=Acaryochloris
marina (strain MBIC 11017) GN=rsmA PE=3 SV=1
Length = 269
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 14/154 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + Q+ AAA +Q D +LEIGPG G LT LL +V+++E D+
Sbjct: 4 PRKRFAQHWLKSQAVLRQIIAAAKIQGCDRILEIGPGRGVLTRELLAQAQSVVSVELDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R F + +L+ DF+ + + + KVVANIP+NI++ ++
Sbjct: 64 LCKSLRHTFNDQENFTLLELDFLNLDVAAELTEPLPN--------KVVANIPYNITSPIL 115
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLV-EP 262
+LL P ++ VVLL+Q+E A RLV EP
Sbjct: 116 SKLLGRIDAPAQPVYETVVLLIQKEVADRLVAEP 149
>sp|Q5M2L6|RSMA_STRT2 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rsmA
PE=3 SV=1
Length = 290
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|A8MK56|RSMA_ALKOO Ribosomal RNA small subunit methyltransferase A OS=Alkaliphilus
oremlandii (strain OhILAs) GN=rsmA PE=3 SV=1
Length = 287
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 93/164 (56%), Gaps = 6/164 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I D + A V EGD ++E+GPG GSLT + +VLA+E D+ ++
Sbjct: 23 KSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGSLTQNIAERADSVLAVEIDKTLI 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++V+ ED +K + + F R KV+AN+P+ ++T +I +
Sbjct: 83 PILKETLGAYPNVEVINEDVLKLDLHKLIEEKFPGRN-----VKVIANLPYYVTTPIIMK 137
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
L + +++Q+E A R+ + T +Y ++I V +YS
Sbjct: 138 FLEEKVPVKSLTIMIQKEVADRM-QAGPGTKDYGALSIAVQYYS 180
>sp|B2J0A6|RSMA_NOSP7 Ribosomal RNA small subunit methyltransferase A OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102) GN=rsmA PE=3
SV=1
Length = 286
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 15/156 (9%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQE------GDIVLEIGPGTGSLTNVLLNAGATVLA 168
PRK QH++ + + D + AA E GD +LEIGPGTG LT LL +++A
Sbjct: 4 PRKVFAQHWLKSEKALDAIIKAAECTESDRSPKGDCILEIGPGTGILTRRLLPLVQSLIA 63
Query: 169 IEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+E D+ + L+ ++ + +LQ DF+ + S++++ +K + KVVANIP+N
Sbjct: 64 VEIDRDLCQLLSKQLGKTENFLLLQGDFLTLDLPSYLVAFPNFQKPN----KVVANIPYN 119
Query: 229 ISTDVIKQLL-----PMGDIFSEVVLLLQEETALRL 259
I+ +I++LL P + F +VLL+Q+E A RL
Sbjct: 120 ITGPIIEKLLGTIANPNPEPFDSIVLLVQKEVAERL 155
>sp|Q03IR2|RSMA_STRTD Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9) GN=rsmA PE=3
SV=1
Length = 290
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q5LY12|RSMA_STRT1 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
thermophilus (strain CNRZ 1066) GN=rsmA PE=3 SV=1
Length = 290
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q74LI0|RSMA_LACJO Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rsmA
PE=3 SV=1
Length = 296
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 12/168 (7%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K+LGQ+++++ + AA +Q GD V+EIGPG GSLT LL AGA VLA E DQ +
Sbjct: 25 KKNLGQNFLVDLPAIKGIVEAADIQPGDQVIEIGPGIGSLTEQLLLAGAKVLAYEVDQDL 84
Query: 176 VGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
++ D+ K++ +D +K + + KS K+VAN+P+
Sbjct: 85 PEILNNELPQKIDGEELKDRFKLVMKDVLKANFVEDNDGFLDLSKS----VKIVANLPYY 140
Query: 229 ISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFV 276
I+T +I L+ FS + L++Q+E A RLV +T EY P++I V
Sbjct: 141 ITTPIIFNLIKSDLDFSSLTLMMQKEVAERLVAKP-KTKEYGPLSIAV 187
>sp|A8AUQ4|RSMA_STRGC Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
gordonii (strain Challis / ATCC 35105 / CH1 / DL1 /
V288) GN=rsmA PE=3 SV=1
Length = 290
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|P0DF13|RSMA_STRPQ Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M3 (strain SSI-1) GN=rsmA PE=3 SV=1
Length = 290
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|P0DF12|RSMA_STRP3 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
GN=rsmA PE=3 SV=1
Length = 290
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q1J8J4|RSMA_STRPF Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M4 (strain MGAS10750) GN=rsmA PE=3
SV=1
Length = 298
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 Y 279
Y
Sbjct: 187 Y 187
>sp|Q48VC6|RSMA_STRPM Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M28 (strain MGAS6180) GN=rsmA PE=3
SV=1
Length = 298
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 Y 279
Y
Sbjct: 187 Y 187
>sp|Q1JIN6|RSMA_STRPD Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M2 (strain MGAS10270) GN=rsmA PE=3
SV=1
Length = 298
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 Y 279
Y
Sbjct: 187 Y 187
>sp|A2RCH2|RSMA_STRPG Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M5 (strain Manfredo) GN=rsmA PE=3 SV=1
Length = 290
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q8P2N8|RSMA_STRP8 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M18 (strain MGAS8232) GN=rsmA PE=3
SV=1
Length = 290
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q5XDX4|RSMA_STRP6 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
GN=rsmA PE=3 SV=2
Length = 290
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q1JNI8|RSMA_STRPC Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M12 (strain MGAS9429) GN=rsmA PE=3
SV=1
Length = 298
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 Y 279
Y
Sbjct: 187 Y 187
>sp|Q1JDL6|RSMA_STRPB Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M12 (strain MGAS2096) GN=rsmA PE=3
SV=1
Length = 298
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 Y 279
Y
Sbjct: 187 Y 187
>sp|Q9A1I0|RSMA_STRP1 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M1 GN=rsmA PE=3 SV=1
Length = 290
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q3M3F3|RSMA_ANAVT Ribosomal RNA small subunit methyltransferase A OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=rsmA PE=3
SV=1
Length = 271
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PR+ QH++ + + D + AA D +LEIGPGTG LT LL +LA+E D+
Sbjct: 4 PRRVFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPLVEALLAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + +++L+ + +K + KVVANIP+NI+ +I
Sbjct: 64 LCKLLVKQLGQKENFLLLQGDFLTLDLVANLLTFPKFQKPN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P + F +VLL+Q+E A RL
Sbjct: 120 EKLLGTIANPNPEPFDSIVLLIQKEVAERL 149
>sp|B9DVT4|RSMA_STRU0 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
uberis (strain ATCC BAA-854 / 0140J) GN=rsmA PE=3 SV=1
Length = 290
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D ++V+ +D +K ++S + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLIPILADTLRDFDNVQVINQDILKSDLQSQI----KQFKNPDLPL 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 Y 279
Y
Sbjct: 179 Y 179
>sp|Q8YS62|RSMA_NOSS1 Ribosomal RNA small subunit methyltransferase A OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rsmA PE=3 SV=1
Length = 271
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 9/150 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D + AA D +LEIGPGTG LT LL A +++A+E D+
Sbjct: 4 PRKLFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPAVQSLVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + +++ S + +K + KVVANIP+NI+ +I
Sbjct: 64 LCELLAKQLGKKENFLLLQGDFLTIDLAANLGSFPKFQKPN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRL 259
++LL P + F +VLL+Q+E A RL
Sbjct: 120 EKLLGTISNPNLEPFDSIVLLIQKEVAERL 149
>sp|A0LA32|RSMA_MAGSM Ribosomal RNA small subunit methyltransferase A OS=Magnetococcus
sp. (strain MC-1) GN=rsmA PE=3 SV=1
Length = 279
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G P K GQ+++++ + ++ A A ++ GD VLEIGPG GSLT LL V
Sbjct: 11 LEQHGLSPNKRFGQNFLVDPSVAPRIVALAGIKAGDRVLEIGPGVGSLTIPLLQKAGAVT 70
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+EKD+ ++ L+R A + L +++ED + ++ + G K+ AN+P+
Sbjct: 71 AVEKDRKLLPLLRVEAAGVGALTLVEEDAL-------LVDYTALAQQLGGPLKLAANLPY 123
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEP 262
NIST ++ LL F + L+ Q+E A RL EP
Sbjct: 124 NISTPLMVHLLDHHAAFECMALMFQKEVAQRLAAEP 159
>sp|B1N079|RSMA_LEUCK Ribosomal RNA small subunit methyltransferase A OS=Leuconostoc
citreum (strain KM20) GN=rsmA PE=3 SV=1
Length = 295
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 5/173 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + + + A + D V+EIGPG G+LT L + V+
Sbjct: 17 LNQYGLHAKKKFGQNFLTDLNVLHGIVDVAGITSEDYVIEIGPGIGALTEQLARSAKKVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D HMV ++ E D +KV++ D +K ++ + + F K+VAN+P+
Sbjct: 77 AFEIDPHMVAVLAETLLPYDNVKVIENDILKVNLAHVIATEF----GEGAHVKIVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
I+T ++ QLL + +V+++Q E A RL + T Y + + + +Y+
Sbjct: 133 YITTPILMQLLRAKISWDNIVVMMQREVADRL-NAEIGTKAYGVLTLTIQYYA 184
>sp|C0M8P2|RSMA_STRE4 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
equi subsp. equi (strain 4047) GN=rsmA PE=3 SV=1
Length = 290
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKSILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ +V ++ + D ++V+ +D +K +++ + ++ S+
Sbjct: 65 AERAAEVMAFEIDERLVPILADTLRDFDNVQVVNQDILKADLQTQL-----KQFSNPDLP 119
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVN 277
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V
Sbjct: 120 IKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQ 177
Query: 278 FY 279
+Y
Sbjct: 178 YY 179
>sp|C0MF36|RSMA_STRS7 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
equi subsp. zooepidemicus (strain H70) GN=rsmA PE=3 SV=1
Length = 290
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ +V ++ + D ++V+ +D +K +++ + ++ S+
Sbjct: 65 AERAAEVMAFEIDERLVPILADTLRDFDNVQVVNQDILKADLQTQL-----KQFSNPDLP 119
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVN 277
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V
Sbjct: 120 IKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQ 177
Query: 278 FY 279
+Y
Sbjct: 178 YY 179
>sp|B4U0U9|RSMA_STREM Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
equi subsp. zooepidemicus (strain MGCS10565) GN=rsmA
PE=3 SV=1
Length = 290
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D+ +V ++ + D ++V+ +D +K +++ + ++ S+
Sbjct: 65 AERAAEVMAFEIDERLVPILADTLRDFDNVQVVNQDILKADLQTQL-----KQFSNPDLP 119
Query: 220 -KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVN 277
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V
Sbjct: 120 IKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQ 177
Query: 278 FY 279
+Y
Sbjct: 178 YY 179
>sp|Q823V2|RSMA_CHLCV Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila
caviae (strain GPIC) GN=rsmA PE=3 SV=1
Length = 278
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 99/172 (57%), Gaps = 16/172 (9%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
+GR P+K L Q+++++ I ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+E
Sbjct: 17 QGR-PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALE 75
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
KD + LK L D + LS E K G +VVAN+P++I+
Sbjct: 76 KDPMFE----------ETLKQLPIDLEITDACKYPLSQLE-EKGWQGKGRVVANLPYHIT 124
Query: 231 TDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
T ++ +L L + + + V +++Q+E A R+ +P + EY + IF+ F++
Sbjct: 125 TPLLTKLFLEVPNQWKTVTVMMQDEVARRITAQPGGK--EYGSLTIFLQFFA 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,534,334
Number of Sequences: 539616
Number of extensions: 3680223
Number of successful extensions: 12518
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 10975
Number of HSP's gapped (non-prelim): 861
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)