Query 023482
Match_columns 281
No_of_seqs 363 out of 2852
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0030 KsgA Dimethyladenosine 100.0 4.1E-29 9E-34 216.7 16.8 156 114-281 3-158 (259)
2 PTZ00338 dimethyladenosine tra 100.0 3.8E-28 8.3E-33 217.0 16.6 156 111-281 6-164 (294)
3 PRK00274 ksgA 16S ribosomal RN 100.0 4E-27 8.7E-32 209.1 18.5 163 105-281 6-168 (272)
4 PRK14896 ksgA 16S ribosomal RN 99.9 3.5E-25 7.7E-30 195.2 16.8 151 114-281 2-152 (258)
5 TIGR00755 ksgA dimethyladenosi 99.9 6.8E-25 1.5E-29 193.0 17.2 155 114-281 2-156 (253)
6 smart00650 rADc Ribosomal RNA 99.9 2.3E-24 5E-29 178.4 15.4 139 130-281 2-140 (169)
7 KOG0820 Ribosomal RNA adenine 99.9 2.1E-24 4.7E-29 184.8 14.1 154 112-280 29-185 (315)
8 PF00398 RrnaAD: Ribosomal RNA 99.9 5E-23 1.1E-27 181.9 13.8 158 114-281 3-161 (262)
9 TIGR00080 pimt protein-L-isoas 99.6 9.7E-15 2.1E-19 125.4 16.2 149 85-245 5-174 (215)
10 PRK13942 protein-L-isoaspartat 99.6 2.4E-14 5.1E-19 122.8 16.9 145 87-244 6-172 (212)
11 PRK13944 protein-L-isoaspartat 99.6 4.6E-14 1E-18 120.3 16.3 110 123-244 54-169 (205)
12 COG2263 Predicted RNA methylas 99.6 2.3E-14 5E-19 117.8 13.5 132 112-259 14-155 (198)
13 COG2518 Pcm Protein-L-isoaspar 99.6 5E-14 1.1E-18 118.5 14.6 111 120-243 52-165 (209)
14 COG2226 UbiE Methylase involve 99.6 1.5E-14 3.3E-19 124.9 11.6 115 124-245 34-153 (238)
15 PF01135 PCMT: Protein-L-isoas 99.6 4.4E-14 9.5E-19 120.5 11.8 146 87-244 2-168 (209)
16 PRK00312 pcm protein-L-isoaspa 99.5 2.8E-13 6E-18 116.0 16.2 150 83-245 5-172 (212)
17 PHA03412 putative methyltransf 99.5 6E-14 1.3E-18 120.4 11.5 108 103-229 14-126 (241)
18 PF01209 Ubie_methyltran: ubiE 99.5 5.7E-14 1.2E-18 121.9 9.0 112 126-249 32-154 (233)
19 PF12847 Methyltransf_18: Meth 99.5 3.5E-13 7.6E-18 103.2 9.9 72 141-225 1-78 (112)
20 PF05175 MTS: Methyltransferas 99.5 3.7E-13 8.1E-18 111.4 9.5 102 130-244 20-136 (170)
21 COG2227 UbiG 2-polyprenyl-3-me 99.4 3.3E-13 7.2E-18 115.1 9.1 150 108-271 23-192 (243)
22 TIGR00537 hemK_rel_arch HemK-r 99.4 8.6E-13 1.9E-17 110.0 11.5 83 132-228 10-93 (179)
23 PLN02244 tocopherol O-methyltr 99.4 2E-12 4.4E-17 118.4 14.8 109 127-247 99-222 (340)
24 PF13659 Methyltransf_26: Meth 99.4 3.2E-13 6.9E-18 104.3 8.0 79 142-230 1-83 (117)
25 PLN02233 ubiquinone biosynthes 99.4 1.2E-12 2.5E-17 115.8 12.4 110 127-248 59-182 (261)
26 COG4123 Predicted O-methyltran 99.4 3.5E-13 7.5E-18 116.6 8.7 87 134-230 37-128 (248)
27 PRK10258 biotin biosynthesis p 99.4 4E-13 8.7E-18 117.9 8.9 108 125-247 26-139 (251)
28 PRK14967 putative methyltransf 99.4 1.1E-12 2.4E-17 113.2 11.3 91 127-230 22-114 (223)
29 TIGR01177 conserved hypothetic 99.4 2E-12 4.3E-17 118.0 13.6 95 123-229 164-260 (329)
30 TIGR02752 MenG_heptapren 2-hep 99.4 2E-12 4.2E-17 112.0 12.1 109 125-245 29-148 (231)
31 PRK15001 SAM-dependent 23S rib 99.4 2E-12 4.3E-17 119.3 12.4 106 129-247 216-339 (378)
32 PTZ00098 phosphoethanolamine N 99.4 1.9E-12 4.2E-17 114.5 11.8 122 114-247 23-155 (263)
33 PRK11207 tellurite resistance 99.4 2.7E-12 6E-17 108.7 12.0 99 133-244 22-130 (197)
34 TIGR00477 tehB tellurite resis 99.4 2.9E-12 6.3E-17 108.4 11.6 100 132-244 21-129 (195)
35 PF13847 Methyltransf_31: Meth 99.4 2.6E-12 5.7E-17 104.2 10.7 99 141-250 3-112 (152)
36 PHA03411 putative methyltransf 99.4 2E-12 4.4E-17 113.5 10.6 93 119-230 45-139 (279)
37 KOG0821 Predicted ribosomal RN 99.4 1.6E-12 3.4E-17 109.1 8.8 171 110-281 19-200 (326)
38 COG2813 RsmC 16S RNA G1207 met 99.4 7.8E-13 1.7E-17 116.8 7.0 93 129-235 146-242 (300)
39 TIGR02469 CbiT precorrin-6Y C5 99.4 1.7E-11 3.7E-16 95.1 13.1 109 126-245 4-119 (124)
40 PRK13168 rumA 23S rRNA m(5)U19 99.4 3.4E-12 7.4E-17 121.0 10.7 105 127-239 283-389 (443)
41 PRK10909 rsmD 16S rRNA m(2)G96 99.4 9.3E-12 2E-16 105.4 12.0 93 127-230 38-134 (199)
42 COG2890 HemK Methylase of poly 99.4 3.9E-12 8.5E-17 113.3 10.0 73 144-230 113-189 (280)
43 PRK03522 rumB 23S rRNA methylu 99.3 4.2E-12 9E-17 115.2 10.1 105 123-238 151-262 (315)
44 PRK11036 putative S-adenosyl-L 99.3 6.7E-12 1.5E-16 110.5 10.8 105 131-247 35-148 (255)
45 PRK00107 gidB 16S rRNA methylt 99.3 9E-12 1.9E-16 104.6 11.0 92 141-245 45-142 (187)
46 PRK08287 cobalt-precorrin-6Y C 99.3 2.1E-11 4.6E-16 102.3 13.1 110 122-245 12-128 (187)
47 PRK14103 trans-aconitate 2-met 99.3 4.8E-12 1E-16 111.4 9.4 98 130-245 18-123 (255)
48 COG2230 Cfa Cyclopropane fatty 99.3 1.3E-11 2.9E-16 108.7 12.1 102 128-244 59-172 (283)
49 TIGR00138 gidB 16S rRNA methyl 99.3 8.4E-12 1.8E-16 104.4 10.2 91 141-245 42-139 (181)
50 PRK14966 unknown domain/N5-glu 99.3 8E-12 1.7E-16 115.8 10.9 78 141-229 251-331 (423)
51 TIGR03533 L3_gln_methyl protei 99.3 1E-11 2.2E-16 111.0 11.1 77 140-229 120-201 (284)
52 PRK09489 rsmC 16S ribosomal RN 99.3 1.8E-11 4E-16 111.9 12.6 102 130-245 185-300 (342)
53 PLN02396 hexaprenyldihydroxybe 99.3 1.6E-11 3.5E-16 111.3 11.5 96 140-247 130-234 (322)
54 PRK01683 trans-aconitate 2-met 99.3 1.6E-11 3.5E-16 108.1 11.1 101 129-245 19-127 (258)
55 PF02353 CMAS: Mycolic acid cy 99.3 2.8E-11 6E-16 107.5 12.4 103 128-245 49-163 (273)
56 PRK13943 protein-L-isoaspartat 99.3 3E-11 6.4E-16 109.5 12.5 110 123-244 62-176 (322)
57 COG4106 Tam Trans-aconitate me 99.3 5.9E-12 1.3E-16 105.4 7.2 99 130-244 19-125 (257)
58 COG2242 CobL Precorrin-6B meth 99.3 6.2E-11 1.3E-15 97.9 12.8 117 123-252 16-139 (187)
59 PRK14968 putative methyltransf 99.3 4.3E-11 9.3E-16 99.9 12.1 90 127-229 9-102 (188)
60 KOG1540 Ubiquinone biosynthesi 99.3 6.7E-11 1.4E-15 101.4 13.3 113 127-248 86-214 (296)
61 PF08241 Methyltransf_11: Meth 99.3 1.3E-11 2.8E-16 91.0 7.8 86 146-244 1-93 (95)
62 TIGR03534 RF_mod_PrmC protein- 99.3 7E-11 1.5E-15 103.2 13.6 89 127-229 74-166 (251)
63 TIGR00536 hemK_fam HemK family 99.3 3.4E-11 7.4E-16 107.7 11.0 90 128-230 100-195 (284)
64 PRK00377 cbiT cobalt-precorrin 99.3 7.5E-11 1.6E-15 100.0 12.6 112 123-245 22-142 (198)
65 PRK11805 N5-glutamine S-adenos 99.3 3.4E-11 7.3E-16 108.8 10.6 74 143-229 135-213 (307)
66 TIGR03704 PrmC_rel_meth putati 99.2 4.9E-11 1.1E-15 104.8 10.9 90 129-229 73-165 (251)
67 PF13649 Methyltransf_25: Meth 99.2 2.4E-11 5.2E-16 91.7 7.7 81 145-237 1-89 (101)
68 PLN02336 phosphoethanolamine N 99.2 7.4E-11 1.6E-15 112.8 12.8 117 119-247 242-368 (475)
69 COG2264 PrmA Ribosomal protein 99.2 5E-11 1.1E-15 105.9 10.6 123 113-250 135-265 (300)
70 PRK00121 trmB tRNA (guanine-N( 99.2 5.8E-11 1.3E-15 101.0 10.4 95 141-245 40-153 (202)
71 PRK15451 tRNA cmo(5)U34 methyl 99.2 5.8E-11 1.3E-15 104.1 10.7 94 140-247 55-163 (247)
72 TIGR02085 meth_trns_rumB 23S r 99.2 4.5E-11 9.8E-16 110.9 10.4 106 123-239 211-323 (374)
73 KOG3420 Predicted RNA methylas 99.2 1.6E-11 3.5E-16 96.5 6.2 101 115-228 19-125 (185)
74 KOG1271 Methyltransferases [Ge 99.2 4.7E-11 1E-15 97.5 8.9 156 100-260 24-194 (227)
75 KOG1270 Methyltransferases [Co 99.2 2.3E-11 5.1E-16 104.7 7.5 114 142-272 90-227 (282)
76 PRK11088 rrmA 23S rRNA methylt 99.2 8.1E-11 1.8E-15 104.6 11.2 91 140-246 84-179 (272)
77 PRK12335 tellurite resistance 99.2 9.3E-11 2E-15 105.0 11.3 91 141-244 120-219 (287)
78 PF03848 TehB: Tellurite resis 99.2 1.9E-10 4E-15 96.5 12.1 105 133-250 22-135 (192)
79 PF01170 UPF0020: Putative RNA 99.2 1.1E-10 2.4E-15 97.5 10.7 96 123-230 10-119 (179)
80 PRK05785 hypothetical protein; 99.2 7.9E-11 1.7E-15 101.9 10.0 71 141-229 51-122 (226)
81 TIGR00479 rumA 23S rRNA (uraci 99.2 8.1E-11 1.7E-15 111.3 10.8 103 128-238 279-384 (431)
82 PRK15128 23S rRNA m(5)C1962 me 99.2 1E-10 2.2E-15 109.1 11.1 112 123-244 204-335 (396)
83 TIGR03587 Pse_Me-ase pseudamin 99.2 1.1E-10 2.3E-15 99.5 10.4 72 140-227 42-115 (204)
84 TIGR02021 BchM-ChlM magnesium 99.2 1.5E-10 3.3E-15 99.5 11.3 82 128-224 40-126 (219)
85 PRK04266 fibrillarin; Provisio 99.2 1.9E-10 4.2E-15 99.4 11.8 103 136-247 67-175 (226)
86 PRK07402 precorrin-6B methylas 99.2 2.4E-10 5.2E-15 96.6 12.2 115 123-248 22-142 (196)
87 TIGR00091 tRNA (guanine-N(7)-) 99.2 9.3E-11 2E-15 99.1 9.5 98 141-247 16-131 (194)
88 PRK11873 arsM arsenite S-adeno 99.2 1.8E-10 3.8E-15 102.4 11.7 99 137-247 73-182 (272)
89 PRK11705 cyclopropane fatty ac 99.2 1.5E-10 3.3E-15 107.6 11.6 102 129-246 155-265 (383)
90 PRK09328 N5-glutamine S-adenos 99.2 1.8E-10 3.9E-15 102.2 11.5 90 127-229 94-187 (275)
91 COG2265 TrmA SAM-dependent met 99.2 1.9E-10 4.1E-15 108.0 11.5 117 118-243 270-389 (432)
92 PRK01544 bifunctional N5-gluta 99.2 1.4E-10 3E-15 111.5 10.9 76 142-230 139-219 (506)
93 PRK14121 tRNA (guanine-N(7)-)- 99.2 2.9E-10 6.2E-15 104.8 12.4 108 132-249 113-236 (390)
94 PLN02781 Probable caffeoyl-CoA 99.2 1.4E-10 3E-15 100.9 9.7 115 124-244 51-174 (234)
95 TIGR03840 TMPT_Se_Te thiopurin 99.2 5E-10 1.1E-14 96.0 12.5 106 133-249 26-153 (213)
96 TIGR00406 prmA ribosomal prote 99.2 4.3E-10 9.4E-15 100.8 12.3 95 140-248 158-259 (288)
97 TIGR00740 methyltransferase, p 99.2 2.3E-10 5E-15 99.7 10.2 94 140-247 52-160 (239)
98 PLN02336 phosphoethanolamine N 99.1 2E-10 4.4E-15 109.8 10.7 105 130-244 26-138 (475)
99 PRK10901 16S rRNA methyltransf 99.1 4.4E-10 9.5E-15 106.1 12.8 96 123-228 226-324 (427)
100 TIGR00452 methyltransferase, p 99.1 7.8E-10 1.7E-14 100.0 13.8 119 119-251 95-228 (314)
101 PLN02490 MPBQ/MSBQ methyltrans 99.1 3.9E-10 8.4E-15 102.8 11.2 106 127-245 98-212 (340)
102 PRK15068 tRNA mo(5)U34 methylt 99.1 5.9E-10 1.3E-14 101.4 12.3 105 131-248 112-226 (322)
103 TIGR02072 BioC biotin biosynth 99.1 2.3E-10 4.9E-15 98.9 9.1 106 128-247 18-134 (240)
104 TIGR00095 RNA methyltransferas 99.1 8.5E-10 1.8E-14 92.9 12.2 99 123-229 30-133 (189)
105 PF06325 PrmA: Ribosomal prote 99.1 2.1E-10 4.6E-15 102.5 8.8 120 113-250 134-261 (295)
106 PRK08317 hypothetical protein; 99.1 8.2E-10 1.8E-14 95.3 12.3 106 128-245 6-121 (241)
107 PRK13255 thiopurine S-methyltr 99.1 1.1E-09 2.3E-14 94.3 12.3 105 133-248 29-155 (218)
108 COG4122 Predicted O-methyltran 99.1 1.6E-09 3.5E-14 92.5 13.1 112 123-244 41-162 (219)
109 PLN02672 methionine S-methyltr 99.1 3.1E-10 6.6E-15 116.1 10.2 96 124-230 96-216 (1082)
110 PLN02585 magnesium protoporphy 99.1 5.3E-10 1.2E-14 101.1 10.6 82 128-224 128-219 (315)
111 PRK06922 hypothetical protein; 99.1 5.9E-10 1.3E-14 108.0 11.3 100 138-247 415-536 (677)
112 PRK11727 23S rRNA mA1618 methy 99.1 7.2E-10 1.6E-14 100.2 11.1 85 141-233 114-205 (321)
113 COG1041 Predicted DNA modifica 99.1 6.5E-10 1.4E-14 100.1 10.6 97 123-231 179-278 (347)
114 PRK05031 tRNA (uracil-5-)-meth 99.1 5.1E-10 1.1E-14 103.4 10.3 111 123-240 185-312 (362)
115 PRK07580 Mg-protoporphyrin IX 99.1 8.6E-10 1.9E-14 95.2 11.1 84 129-227 48-137 (230)
116 PF02384 N6_Mtase: N-6 DNA Met 99.1 4.4E-10 9.6E-15 101.7 9.6 106 114-230 20-138 (311)
117 PRK04148 hypothetical protein; 99.1 1.2E-09 2.6E-14 86.2 10.5 91 129-235 4-96 (134)
118 PF03602 Cons_hypoth95: Conser 99.1 7E-10 1.5E-14 92.9 9.7 124 123-255 22-155 (183)
119 TIGR02143 trmA_only tRNA (urac 99.1 7.3E-10 1.6E-14 102.0 10.7 113 127-240 184-303 (353)
120 PRK11783 rlmL 23S rRNA m(2)G24 99.1 7.6E-10 1.6E-14 110.4 11.2 94 123-229 522-620 (702)
121 PF05401 NodS: Nodulation prot 99.1 5.6E-10 1.2E-14 93.0 8.0 100 136-248 38-146 (201)
122 PRK00216 ubiE ubiquinone/menaq 99.0 3E-09 6.5E-14 91.9 12.7 107 126-244 36-154 (239)
123 PF08704 GCD14: tRNA methyltra 99.0 2.4E-09 5.1E-14 93.4 11.8 112 124-244 23-142 (247)
124 COG3963 Phospholipid N-methylt 99.0 3.7E-09 8E-14 85.3 11.8 104 113-228 20-128 (194)
125 PRK14902 16S rRNA methyltransf 99.0 1.9E-09 4.2E-14 102.3 12.1 95 123-228 232-331 (444)
126 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 3.2E-09 6.9E-14 90.8 12.2 107 127-245 25-140 (223)
127 TIGR00446 nop2p NOL1/NOP2/sun 99.0 1.3E-09 2.8E-14 96.5 9.6 94 123-228 53-151 (264)
128 PRK00517 prmA ribosomal protei 99.0 2.2E-09 4.9E-14 94.2 11.0 91 140-247 118-212 (250)
129 PRK06202 hypothetical protein; 99.0 1.6E-09 3.5E-14 94.0 9.8 80 139-231 58-143 (232)
130 PLN02476 O-methyltransferase 99.0 2.5E-09 5.4E-14 94.7 11.0 116 123-244 100-224 (278)
131 KOG2904 Predicted methyltransf 99.0 1.9E-09 4.1E-14 93.4 9.8 99 127-232 131-237 (328)
132 PRK05134 bifunctional 3-demeth 99.0 3E-09 6.6E-14 92.1 11.1 108 127-245 34-148 (233)
133 TIGR02987 met_A_Alw26 type II 99.0 1.9E-09 4E-14 104.5 9.6 105 118-230 2-125 (524)
134 smart00828 PKS_MT Methyltransf 99.0 2.1E-09 4.5E-14 92.6 8.8 92 143-247 1-103 (224)
135 PRK14903 16S rRNA methyltransf 99.0 2.5E-09 5.5E-14 101.0 9.7 95 123-228 219-318 (431)
136 PF08242 Methyltransf_12: Meth 99.0 7.8E-11 1.7E-15 88.3 -0.5 75 146-230 1-79 (99)
137 PF01596 Methyltransf_3: O-met 99.0 3.6E-09 7.9E-14 90.0 9.7 113 126-244 30-151 (205)
138 PF05958 tRNA_U5-meth_tr: tRNA 99.0 2.2E-09 4.7E-14 98.9 8.6 113 125-238 181-299 (352)
139 PF02475 Met_10: Met-10+ like- 99.0 1.9E-09 4E-14 91.3 7.5 110 119-241 79-195 (200)
140 COG2519 GCD14 tRNA(1-methylade 99.0 6.7E-09 1.4E-13 89.6 11.0 105 127-244 80-191 (256)
141 PRK14904 16S rRNA methyltransf 99.0 4.1E-09 8.9E-14 100.1 10.5 92 123-227 232-328 (445)
142 PRK14901 16S rRNA methyltransf 98.9 3.8E-09 8.2E-14 100.0 9.7 98 123-228 234-336 (434)
143 PF09445 Methyltransf_15: RNA 98.9 1.9E-09 4.1E-14 88.0 6.4 80 143-231 1-83 (163)
144 TIGR01983 UbiG ubiquinone bios 98.9 8.6E-09 1.9E-13 88.6 10.7 108 126-244 26-145 (224)
145 COG0742 N6-adenine-specific me 98.9 1.6E-08 3.5E-13 83.9 11.7 99 124-231 24-128 (187)
146 KOG1541 Predicted protein carb 98.9 3.2E-09 7E-14 89.4 7.5 86 123-223 30-118 (270)
147 PRK11188 rrmJ 23S rRNA methylt 98.9 1E-08 2.2E-13 87.7 10.8 95 139-246 49-163 (209)
148 PRK00811 spermidine synthase; 98.9 7.7E-09 1.7E-13 92.5 10.3 95 140-245 75-188 (283)
149 PF07021 MetW: Methionine bios 98.9 5.4E-09 1.2E-13 87.0 8.3 90 133-241 7-102 (193)
150 PRK13256 thiopurine S-methyltr 98.9 3E-08 6.5E-13 85.4 13.0 114 125-248 28-163 (226)
151 PRK04457 spermidine synthase; 98.9 1.4E-08 3.1E-13 89.8 11.2 107 129-246 53-175 (262)
152 PF13489 Methyltransf_23: Meth 98.9 6.5E-09 1.4E-13 84.2 8.3 92 139-250 20-117 (161)
153 TIGR02081 metW methionine bios 98.9 7.7E-09 1.7E-13 87.3 8.9 93 132-242 6-103 (194)
154 COG0116 Predicted N6-adenine-s 98.9 1.2E-08 2.7E-13 93.1 9.8 94 124-229 174-311 (381)
155 PLN03075 nicotianamine synthas 98.9 1.8E-08 3.8E-13 89.9 10.6 101 132-244 114-229 (296)
156 PTZ00146 fibrillarin; Provisio 98.9 2E-08 4.4E-13 89.2 10.7 101 137-246 128-235 (293)
157 PLN02589 caffeoyl-CoA O-methyl 98.9 1.2E-08 2.6E-13 89.2 8.9 116 124-244 62-186 (247)
158 TIGR00563 rsmB ribosomal RNA s 98.8 1.8E-08 4E-13 95.1 10.5 96 123-228 220-320 (426)
159 KOG3191 Predicted N6-DNA-methy 98.8 1.9E-08 4E-13 82.4 9.0 78 141-231 43-124 (209)
160 PRK11783 rlmL 23S rRNA m(2)G24 98.8 2.5E-08 5.5E-13 99.6 11.7 97 123-229 171-315 (702)
161 PF05724 TPMT: Thiopurine S-me 98.8 2.4E-08 5.3E-13 85.8 9.9 111 126-248 23-155 (218)
162 PF08003 Methyltransf_9: Prote 98.8 3.2E-08 7E-13 87.7 10.7 113 130-255 104-226 (315)
163 TIGR03438 probable methyltrans 98.8 3.9E-08 8.6E-13 88.7 11.2 67 130-198 54-126 (301)
164 smart00138 MeTrc Methyltransfe 98.8 2.1E-08 4.5E-13 88.8 8.9 93 140-244 98-238 (264)
165 TIGR02716 C20_methyl_CrtF C-20 98.8 8.8E-08 1.9E-12 86.5 13.1 105 129-248 137-254 (306)
166 PRK04338 N(2),N(2)-dimethylgua 98.8 4.5E-08 9.8E-13 90.9 10.4 106 118-236 33-143 (382)
167 PRK00050 16S rRNA m(4)C1402 me 98.8 3.2E-08 7E-13 88.5 9.1 91 127-226 5-99 (296)
168 cd02440 AdoMet_MTases S-adenos 98.8 7.2E-08 1.6E-12 70.8 9.4 75 144-229 1-78 (107)
169 TIGR00438 rrmJ cell division p 98.8 5.2E-08 1.1E-12 81.8 9.6 75 138-225 29-106 (188)
170 COG2520 Predicted methyltransf 98.8 3E-08 6.4E-13 90.0 8.5 112 121-244 168-285 (341)
171 PLN02366 spermidine synthase 98.7 9.6E-08 2.1E-12 86.2 11.5 95 140-244 90-202 (308)
172 PRK01581 speE spermidine synth 98.7 5.9E-08 1.3E-12 88.6 9.5 95 139-244 148-264 (374)
173 KOG2187 tRNA uracil-5-methyltr 98.7 5.2E-08 1.1E-12 91.3 9.2 119 114-239 356-478 (534)
174 PRK03612 spermidine synthase; 98.7 6E-08 1.3E-12 93.8 9.8 95 140-245 296-412 (521)
175 TIGR00417 speE spermidine synt 98.7 9.9E-08 2.1E-12 84.8 10.0 95 140-245 71-183 (270)
176 TIGR00478 tly hemolysin TlyA f 98.7 1.9E-07 4.2E-12 80.7 11.0 110 130-255 63-175 (228)
177 COG2521 Predicted archaeal met 98.6 3.4E-08 7.5E-13 83.9 5.0 116 135-260 128-266 (287)
178 KOG4300 Predicted methyltransf 98.6 8.3E-08 1.8E-12 80.2 7.2 91 143-244 78-178 (252)
179 PF02390 Methyltransf_4: Putat 98.6 9.8E-08 2.1E-12 80.7 7.7 99 142-249 18-134 (195)
180 KOG1499 Protein arginine N-met 98.6 1.4E-07 3E-12 84.9 8.6 74 138-224 57-134 (346)
181 COG1092 Predicted SAM-dependen 98.6 9.7E-08 2.1E-12 88.4 7.9 112 123-244 201-332 (393)
182 KOG1661 Protein-L-isoaspartate 98.6 5.1E-07 1.1E-11 75.7 11.3 112 121-244 60-190 (237)
183 COG0220 Predicted S-adenosylme 98.6 2.9E-07 6.3E-12 79.4 10.2 100 142-250 49-166 (227)
184 KOG1500 Protein arginine N-met 98.6 1.7E-07 3.8E-12 83.5 8.4 84 129-226 165-252 (517)
185 PRK10742 putative methyltransf 98.6 2.9E-07 6.2E-12 79.9 9.1 88 131-229 76-176 (250)
186 PF10672 Methyltrans_SAM: S-ad 98.5 5E-07 1.1E-11 80.5 9.5 93 123-227 108-205 (286)
187 PRK01544 bifunctional N5-gluta 98.5 6.7E-07 1.4E-11 86.2 9.6 100 141-250 347-464 (506)
188 KOG2915 tRNA(1-methyladenosine 98.4 2.8E-06 6E-11 73.9 10.7 90 130-229 94-189 (314)
189 PF10294 Methyltransf_16: Puta 98.4 3.8E-06 8.3E-11 69.7 10.9 96 139-243 43-151 (173)
190 PF05185 PRMT5: PRMT5 arginine 98.4 2.3E-06 4.9E-11 81.1 10.7 90 142-244 187-293 (448)
191 COG4976 Predicted methyltransf 98.4 2.7E-07 6E-12 78.3 3.7 110 124-246 108-223 (287)
192 KOG2730 Methylase [General fun 98.4 5E-07 1.1E-11 76.2 4.9 103 123-233 75-181 (263)
193 TIGR00308 TRM1 tRNA(guanine-26 98.4 2.3E-06 5E-11 79.2 9.6 84 143-238 46-134 (374)
194 PLN02823 spermine synthase 98.3 3.7E-06 8.1E-11 76.8 10.1 93 141-244 103-216 (336)
195 KOG2671 Putative RNA methylase 98.3 9.8E-07 2.1E-11 79.0 5.9 116 106-233 174-300 (421)
196 COG0286 HsdM Type I restrictio 98.3 3.3E-06 7.1E-11 81.1 9.3 107 114-228 160-275 (489)
197 COG4076 Predicted RNA methylas 98.3 1.2E-06 2.7E-11 72.2 5.2 61 142-202 33-95 (252)
198 PF08123 DOT1: Histone methyla 98.2 1.7E-06 3.7E-11 73.6 5.6 93 126-227 27-133 (205)
199 TIGR00006 S-adenosyl-methyltra 98.2 1.1E-05 2.3E-10 72.6 10.8 97 123-226 2-101 (305)
200 PF05971 Methyltransf_10: Prot 98.2 1.2E-05 2.6E-10 71.9 10.2 100 129-235 85-195 (299)
201 KOG3010 Methyltransferase [Gen 98.2 3.5E-06 7.5E-11 72.2 5.9 87 144-242 36-130 (261)
202 PRK11933 yebU rRNA (cytosine-C 98.2 9.6E-06 2.1E-10 77.2 9.6 93 123-226 93-192 (470)
203 KOG2361 Predicted methyltransf 98.1 1.1E-05 2.4E-10 69.1 8.1 115 122-244 49-179 (264)
204 PF13679 Methyltransf_32: Meth 98.0 3E-05 6.5E-10 62.0 8.2 60 140-199 24-94 (141)
205 KOG1663 O-methyltransferase [S 98.0 7.7E-05 1.7E-09 63.7 10.0 116 123-244 55-179 (237)
206 PRK11760 putative 23S rRNA C24 98.0 7.9E-05 1.7E-09 67.6 10.6 93 140-250 210-304 (357)
207 TIGR01444 fkbM_fam methyltrans 97.9 2.2E-05 4.7E-10 62.5 6.2 55 144-198 1-59 (143)
208 COG0144 Sun tRNA and rRNA cyto 97.8 0.00012 2.7E-09 67.5 10.4 95 123-226 138-238 (355)
209 PF03291 Pox_MCEL: mRNA cappin 97.8 6.7E-05 1.5E-09 68.5 8.3 97 141-244 62-182 (331)
210 PF00891 Methyltransf_2: O-met 97.8 0.00013 2.8E-09 63.5 9.8 85 131-235 90-177 (241)
211 COG3897 Predicted methyltransf 97.7 9.1E-05 2E-09 61.7 6.8 87 128-229 66-155 (218)
212 PRK00536 speE spermidine synth 97.7 0.00025 5.5E-09 62.5 9.9 90 140-244 71-167 (262)
213 COG0421 SpeE Spermidine syntha 97.7 0.00038 8.2E-09 62.1 10.9 91 143-244 78-186 (282)
214 PF05219 DREV: DREV methyltran 97.7 0.00028 6.1E-09 61.6 9.7 113 119-251 67-191 (265)
215 KOG2899 Predicted methyltransf 97.7 6.6E-05 1.4E-09 64.5 5.4 46 141-186 58-105 (288)
216 PF01795 Methyltransf_5: MraW 97.7 0.00021 4.5E-09 64.3 8.8 94 127-227 6-103 (310)
217 KOG2940 Predicted methyltransf 97.6 0.00015 3.3E-09 61.9 6.5 91 142-244 73-170 (325)
218 PF01564 Spermine_synth: Sperm 97.6 0.00039 8.4E-09 61.0 9.4 94 141-245 76-188 (246)
219 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.6 0.00024 5.2E-09 63.6 8.2 96 123-228 67-167 (283)
220 PLN02232 ubiquinone biosynthes 97.6 0.00011 2.5E-09 60.0 5.5 69 167-247 1-80 (160)
221 KOG1975 mRNA cap methyltransfe 97.5 0.00017 3.8E-09 64.4 6.1 109 130-244 106-233 (389)
222 PF04816 DUF633: Family of unk 97.5 0.00035 7.6E-09 59.5 7.8 55 145-199 1-60 (205)
223 PF02527 GidB: rRNA small subu 97.5 0.00029 6.3E-09 59.0 7.1 88 144-244 51-144 (184)
224 COG0357 GidB Predicted S-adeno 97.5 0.00066 1.4E-08 58.0 9.2 90 142-244 68-164 (215)
225 PF04445 SAM_MT: Putative SAM- 97.5 0.00017 3.8E-09 62.2 5.6 87 132-229 64-163 (234)
226 PF01728 FtsJ: FtsJ-like methy 97.5 0.00019 4.2E-09 59.6 5.1 74 141-225 23-99 (181)
227 COG0275 Predicted S-adenosylme 97.4 0.0011 2.3E-08 59.0 9.1 94 125-225 7-104 (314)
228 PF01861 DUF43: Protein of unk 97.3 0.0026 5.7E-08 55.0 10.6 109 112-231 13-126 (243)
229 PF06080 DUF938: Protein of un 97.3 0.0012 2.7E-08 55.8 8.4 99 142-244 26-137 (204)
230 cd00315 Cyt_C5_DNA_methylase C 97.3 0.0009 2E-08 59.6 7.8 75 144-232 2-77 (275)
231 PRK11524 putative methyltransf 97.2 0.0013 2.7E-08 58.9 7.9 59 125-184 193-251 (284)
232 PF01555 N6_N4_Mtase: DNA meth 97.2 0.0014 3E-08 55.8 7.5 58 123-181 174-231 (231)
233 COG1189 Predicted rRNA methyla 97.2 0.003 6.4E-08 54.5 9.1 115 132-260 69-189 (245)
234 PF07942 N2227: N2227-like pro 97.1 0.0052 1.1E-07 54.4 10.3 40 141-180 56-95 (270)
235 COG3129 Predicted SAM-dependen 97.1 0.0026 5.6E-08 54.5 7.9 102 127-235 58-171 (292)
236 PRK10611 chemotaxis methyltran 97.1 0.0034 7.4E-08 56.2 9.0 60 123-182 96-166 (287)
237 TIGR03439 methyl_EasF probable 97.1 0.0035 7.5E-08 57.0 9.2 66 132-199 69-144 (319)
238 KOG4058 Uncharacterized conser 97.0 0.0013 2.7E-08 52.6 5.1 75 128-202 59-137 (199)
239 PF05891 Methyltransf_PK: AdoM 97.0 0.0039 8.4E-08 53.2 8.2 71 142-224 56-129 (218)
240 PF09243 Rsm22: Mitochondrial 97.0 0.0043 9.4E-08 55.2 8.9 50 137-186 29-81 (274)
241 PRK13699 putative methylase; P 97.0 0.0036 7.7E-08 54.2 7.9 61 124-185 147-207 (227)
242 COG0500 SmtA SAM-dependent met 96.9 0.0096 2.1E-07 45.8 9.2 88 145-244 52-151 (257)
243 PHA01634 hypothetical protein 96.9 0.0026 5.6E-08 49.5 5.6 46 141-186 28-74 (156)
244 PF12147 Methyltransf_20: Puta 96.8 0.024 5.2E-07 50.4 12.1 99 141-240 135-265 (311)
245 PF03141 Methyltransf_29: Puta 96.8 0.0025 5.4E-08 60.4 6.3 80 127-211 99-187 (506)
246 COG2384 Predicted SAM-dependen 96.8 0.0067 1.5E-07 51.7 8.2 58 141-198 16-78 (226)
247 COG0293 FtsJ 23S rRNA methylas 96.8 0.0036 7.8E-08 53.0 6.4 74 140-226 44-120 (205)
248 KOG1501 Arginine N-methyltrans 96.8 0.0024 5.3E-08 59.4 5.7 57 144-200 69-129 (636)
249 PF01269 Fibrillarin: Fibrilla 96.8 0.014 2.9E-07 50.1 9.7 99 137-244 69-174 (229)
250 PF00145 DNA_methylase: C-5 cy 96.8 0.0033 7.1E-08 56.7 6.4 68 144-226 2-70 (335)
251 PF01739 CheR: CheR methyltran 96.7 0.012 2.5E-07 49.9 8.9 72 141-224 31-143 (196)
252 KOG1709 Guanidinoacetate methy 96.7 0.015 3.2E-07 49.5 9.2 105 129-244 90-202 (271)
253 KOG2352 Predicted spermine/spe 96.6 0.0046 1E-07 58.4 6.6 103 144-249 51-162 (482)
254 PF05148 Methyltransf_8: Hypot 96.6 0.0087 1.9E-07 50.8 7.1 92 129-246 59-156 (219)
255 KOG2078 tRNA modification enzy 96.5 0.0019 4.1E-08 59.9 3.0 61 139-199 247-311 (495)
256 COG4262 Predicted spermidine s 96.5 0.01 2.2E-07 54.2 7.4 76 141-227 289-375 (508)
257 PF07091 FmrO: Ribosomal RNA m 96.5 0.0084 1.8E-07 52.2 6.5 60 141-200 105-167 (251)
258 TIGR00497 hsdM type I restrict 96.4 0.023 4.9E-07 55.0 9.6 98 122-229 196-305 (501)
259 PF11599 AviRa: RRNA methyltra 96.3 0.0089 1.9E-07 50.8 5.7 57 128-184 34-98 (246)
260 KOG3045 Predicted RNA methylas 96.2 0.016 3.6E-07 50.5 7.0 89 130-246 168-262 (325)
261 TIGR00675 dcm DNA-methyltransf 96.2 0.011 2.3E-07 53.8 6.1 68 145-227 1-69 (315)
262 PF04989 CmcI: Cephalosporin h 96.2 0.008 1.7E-07 51.0 4.8 124 115-242 6-141 (206)
263 KOG1122 tRNA and rRNA cytosine 96.1 0.019 4.2E-07 53.3 7.2 86 133-228 233-323 (460)
264 PF03059 NAS: Nicotianamine sy 95.9 0.099 2.1E-06 46.5 10.7 85 142-238 121-217 (276)
265 PRK10458 DNA cytosine methylas 95.8 0.083 1.8E-06 50.5 10.5 86 143-228 89-180 (467)
266 COG0270 Dcm Site-specific DNA 95.6 0.043 9.3E-07 50.2 7.5 77 143-231 4-81 (328)
267 KOG2912 Predicted DNA methylas 95.4 0.033 7.1E-07 50.0 5.7 81 146-231 107-192 (419)
268 COG1064 AdhP Zn-dependent alco 95.4 0.13 2.7E-06 47.1 9.5 98 137-250 162-261 (339)
269 PF04672 Methyltransf_19: S-ad 95.3 0.055 1.2E-06 47.7 6.7 74 126-199 52-133 (267)
270 KOG1269 SAM-dependent methyltr 95.3 0.012 2.6E-07 54.4 2.6 72 138-209 107-182 (364)
271 COG1889 NOP1 Fibrillarin-like 95.1 0.19 4.2E-06 42.4 8.8 96 138-242 73-174 (231)
272 KOG3987 Uncharacterized conser 95.0 0.011 2.3E-07 50.1 1.2 74 109-182 77-153 (288)
273 PF13578 Methyltransf_24: Meth 94.9 0.013 2.8E-07 44.0 1.4 70 146-226 1-78 (106)
274 KOG1227 Putative methyltransfe 94.9 0.028 6E-07 50.1 3.6 59 141-199 194-257 (351)
275 PF03686 UPF0146: Uncharacteri 94.8 0.12 2.5E-06 40.4 6.3 74 142-235 14-89 (127)
276 KOG2198 tRNA cytosine-5-methyl 94.6 0.12 2.5E-06 47.5 7.0 90 135-227 149-246 (375)
277 PF02636 Methyltransf_28: Puta 94.6 0.16 3.4E-06 44.6 7.7 44 142-185 19-72 (252)
278 PF07757 AdoMet_MTase: Predict 94.5 0.048 1E-06 41.3 3.5 32 141-172 58-89 (112)
279 KOG3115 Methyltransferase-like 94.4 0.039 8.4E-07 46.6 3.3 57 143-199 62-129 (249)
280 KOG2651 rRNA adenine N-6-methy 94.4 0.14 3E-06 47.2 7.0 41 141-181 153-194 (476)
281 COG1565 Uncharacterized conser 94.3 0.23 5E-06 45.6 8.2 65 122-186 47-132 (370)
282 KOG3178 Hydroxyindole-O-methyl 94.0 0.14 3E-06 46.7 6.1 55 143-199 179-233 (342)
283 COG1867 TRM1 N2,N2-dimethylgua 94.0 0.34 7.4E-06 44.6 8.7 99 128-238 39-141 (380)
284 KOG1596 Fibrillarin and relate 94.0 0.15 3.3E-06 44.2 5.9 100 136-244 151-257 (317)
285 COG3510 CmcI Cephalosporin hyd 93.7 0.17 3.6E-06 42.4 5.6 84 114-200 42-131 (237)
286 COG1568 Predicted methyltransf 93.3 0.18 3.9E-06 44.6 5.4 120 100-230 106-234 (354)
287 PRK12829 short chain dehydroge 93.1 0.82 1.8E-05 39.5 9.5 83 140-226 9-95 (264)
288 PRK08339 short chain dehydroge 93.0 0.73 1.6E-05 40.3 9.0 82 141-225 7-93 (263)
289 COG0863 DNA modification methy 92.9 0.46 9.9E-06 42.3 7.7 61 125-186 207-267 (302)
290 PRK05867 short chain dehydroge 92.8 0.68 1.5E-05 40.0 8.6 83 141-225 8-94 (253)
291 KOG1331 Predicted methyltransf 92.8 0.1 2.2E-06 46.2 3.2 62 141-208 45-106 (293)
292 KOG4589 Cell division protein 92.7 0.17 3.8E-06 42.2 4.3 74 140-226 68-145 (232)
293 PRK08340 glucose-1-dehydrogena 92.7 0.71 1.5E-05 40.1 8.5 80 144-225 2-84 (259)
294 PRK06172 short chain dehydroge 92.7 0.79 1.7E-05 39.5 8.8 82 141-225 6-92 (253)
295 PRK09072 short chain dehydroge 92.6 0.92 2E-05 39.4 9.2 83 141-226 4-89 (263)
296 PRK07063 short chain dehydroge 92.5 0.87 1.9E-05 39.4 8.9 83 141-225 6-94 (260)
297 COG1748 LYS9 Saccharopine dehy 92.5 0.79 1.7E-05 42.8 8.8 97 143-250 2-101 (389)
298 KOG2360 Proliferation-associat 92.4 0.26 5.6E-06 45.5 5.4 77 123-199 195-276 (413)
299 KOG1201 Hydroxysteroid 17-beta 92.3 0.67 1.5E-05 41.5 7.7 96 141-238 37-142 (300)
300 PRK07890 short chain dehydroge 92.1 1 2.3E-05 38.7 8.8 82 141-225 4-90 (258)
301 PLN02253 xanthoxin dehydrogena 92.1 1 2.3E-05 39.4 8.9 82 141-225 17-102 (280)
302 PRK06124 gluconate 5-dehydroge 92.0 1.2 2.7E-05 38.3 9.1 83 141-226 10-97 (256)
303 PF02005 TRM: N2,N2-dimethylgu 92.0 0.7 1.5E-05 43.1 7.9 85 142-238 50-141 (377)
304 PRK07326 short chain dehydroge 92.0 1.1 2.4E-05 38.0 8.7 82 141-225 5-90 (237)
305 PRK07024 short chain dehydroge 91.9 1.2 2.6E-05 38.6 8.9 80 143-225 3-86 (257)
306 PRK07523 gluconate 5-dehydroge 91.9 1.1 2.5E-05 38.6 8.8 82 141-225 9-95 (255)
307 PRK07454 short chain dehydroge 91.9 1.5 3.3E-05 37.4 9.5 82 141-225 5-91 (241)
308 COG1352 CheR Methylase of chem 91.8 0.51 1.1E-05 41.9 6.5 40 142-181 97-147 (268)
309 PRK07478 short chain dehydroge 91.8 1.3 2.8E-05 38.2 9.0 83 141-225 5-91 (254)
310 PRK06139 short chain dehydroge 91.8 1 2.2E-05 41.2 8.7 83 141-225 6-92 (330)
311 PRK07677 short chain dehydroge 91.8 1.1 2.3E-05 38.7 8.5 81 143-225 2-86 (252)
312 PRK05876 short chain dehydroge 91.8 1.2 2.6E-05 39.3 8.9 84 141-226 5-92 (275)
313 PRK06194 hypothetical protein; 91.7 1.2 2.6E-05 39.1 8.9 83 141-226 5-92 (287)
314 PRK08217 fabG 3-ketoacyl-(acyl 91.6 1.4 3E-05 37.7 8.9 83 141-226 4-91 (253)
315 PRK06200 2,3-dihydroxy-2,3-dih 91.5 1.3 2.9E-05 38.4 8.8 82 141-226 5-89 (263)
316 PRK06949 short chain dehydroge 91.5 1.4 3E-05 38.0 8.9 83 141-226 8-95 (258)
317 PRK07231 fabG 3-ketoacyl-(acyl 91.4 1.5 3.3E-05 37.4 9.0 84 141-226 4-90 (251)
318 PRK08862 short chain dehydroge 91.3 1.3 2.8E-05 38.0 8.4 83 141-225 4-91 (227)
319 PRK08267 short chain dehydroge 91.3 1.6 3.4E-05 37.8 9.0 82 143-226 2-86 (260)
320 PRK05866 short chain dehydroge 91.3 1.4 3.1E-05 39.3 8.9 83 141-225 39-125 (293)
321 PRK05872 short chain dehydroge 91.3 1.5 3.4E-05 39.0 9.2 84 141-226 8-94 (296)
322 PRK08213 gluconate 5-dehydroge 91.2 1.5 3.2E-05 38.0 8.8 83 141-226 11-98 (259)
323 PRK07109 short chain dehydroge 91.2 1.4 3E-05 40.2 8.9 84 141-226 7-94 (334)
324 PRK07097 gluconate 5-dehydroge 91.2 1.5 3.3E-05 38.1 8.9 84 141-226 9-96 (265)
325 PF02254 TrkA_N: TrkA-N domain 91.1 1.4 3.1E-05 33.2 7.6 64 150-226 4-71 (116)
326 PRK09880 L-idonate 5-dehydroge 91.1 1.8 4E-05 39.3 9.6 47 135-181 163-212 (343)
327 COG1255 Uncharacterized protei 91.0 1.4 3.1E-05 33.8 7.2 73 143-235 15-89 (129)
328 PRK07035 short chain dehydroge 91.0 1.6 3.5E-05 37.5 8.8 84 141-226 7-94 (252)
329 PRK08277 D-mannonate oxidoredu 91.0 1.6 3.5E-05 38.2 8.9 83 141-225 9-95 (278)
330 KOG0024 Sorbitol dehydrogenase 91.0 0.55 1.2E-05 42.6 5.7 51 133-184 161-214 (354)
331 PRK05854 short chain dehydroge 90.8 1.6 3.5E-05 39.3 8.9 83 141-225 13-101 (313)
332 PRK07814 short chain dehydroge 90.8 1.7 3.8E-05 37.7 8.9 82 141-225 9-95 (263)
333 PRK08589 short chain dehydroge 90.8 1.8 3.9E-05 37.9 9.0 82 141-225 5-90 (272)
334 PF06962 rRNA_methylase: Putat 90.7 0.62 1.3E-05 37.1 5.3 81 165-255 1-99 (140)
335 PRK05786 fabG 3-ketoacyl-(acyl 90.7 1.9 4.1E-05 36.6 8.9 83 141-226 4-90 (238)
336 PRK08226 short chain dehydroge 90.7 1.8 3.9E-05 37.4 8.9 82 141-225 5-90 (263)
337 PRK08643 acetoin reductase; Va 90.6 1.8 3.8E-05 37.3 8.7 81 142-225 2-87 (256)
338 PRK06138 short chain dehydroge 90.6 2 4.3E-05 36.8 9.0 83 141-226 4-90 (252)
339 PRK07533 enoyl-(acyl carrier p 90.5 1.4 3.1E-05 38.3 8.0 83 141-225 9-96 (258)
340 PRK07904 short chain dehydroge 90.5 1.7 3.6E-05 37.8 8.5 81 141-225 7-95 (253)
341 COG1063 Tdh Threonine dehydrog 90.4 3.8 8.3E-05 37.7 11.1 45 140-184 167-214 (350)
342 KOG2793 Putative N2,N2-dimethy 90.3 1.1 2.4E-05 39.3 7.0 36 141-176 86-122 (248)
343 PRK12823 benD 1,6-dihydroxycyc 90.3 2.1 4.5E-05 37.0 8.9 82 141-225 7-92 (260)
344 PRK05650 short chain dehydroge 90.3 2 4.3E-05 37.5 8.8 79 144-225 2-85 (270)
345 PRK09242 tropinone reductase; 90.3 2 4.3E-05 37.1 8.7 84 141-226 8-97 (257)
346 PRK13394 3-hydroxybutyrate deh 90.2 2 4.3E-05 37.0 8.7 82 141-225 6-92 (262)
347 PRK07062 short chain dehydroge 90.1 1.9 4.1E-05 37.4 8.5 83 141-225 7-95 (265)
348 PRK07791 short chain dehydroge 90.1 2 4.4E-05 38.0 8.8 83 141-225 5-100 (286)
349 PF07279 DUF1442: Protein of u 90.1 4.6 9.9E-05 34.6 10.3 72 126-197 26-106 (218)
350 PRK08303 short chain dehydroge 90.1 1.7 3.6E-05 39.1 8.3 83 141-225 7-103 (305)
351 PRK07774 short chain dehydroge 89.9 2.2 4.7E-05 36.5 8.6 83 141-226 5-92 (250)
352 PRK12481 2-deoxy-D-gluconate 3 89.8 1.8 3.8E-05 37.5 8.0 81 141-225 7-91 (251)
353 PRK12826 3-ketoacyl-(acyl-carr 89.8 2.6 5.6E-05 35.9 9.0 83 141-226 5-92 (251)
354 PRK06196 oxidoreductase; Provi 89.8 2.2 4.8E-05 38.3 8.9 79 141-225 25-107 (315)
355 PF11899 DUF3419: Protein of u 89.5 1 2.3E-05 42.0 6.6 51 134-184 28-78 (380)
356 PRK08085 gluconate 5-dehydroge 89.5 2.7 5.8E-05 36.2 8.9 83 141-226 8-95 (254)
357 PRK08265 short chain dehydroge 89.5 2.5 5.4E-05 36.7 8.8 81 141-225 5-88 (261)
358 PRK06113 7-alpha-hydroxysteroi 89.4 2.7 5.8E-05 36.3 8.8 83 141-225 10-96 (255)
359 PRK07666 fabG 3-ketoacyl-(acyl 89.2 2.7 5.7E-05 35.8 8.6 81 142-225 7-92 (239)
360 TIGR03206 benzo_BadH 2-hydroxy 89.1 3.3 7.1E-05 35.4 9.2 82 142-226 3-89 (250)
361 PRK07453 protochlorophyllide o 89.1 3.1 6.8E-05 37.4 9.4 82 141-225 5-91 (322)
362 PRK12939 short chain dehydroge 89.0 3.2 7E-05 35.3 9.0 82 141-225 6-92 (250)
363 PRK06181 short chain dehydroge 89.0 3.1 6.7E-05 36.0 9.0 80 143-225 2-86 (263)
364 PRK06125 short chain dehydroge 88.9 3.1 6.7E-05 36.0 8.9 78 141-225 6-89 (259)
365 TIGR01963 PHB_DH 3-hydroxybuty 88.8 2.7 5.9E-05 35.9 8.4 80 143-225 2-86 (255)
366 PRK06720 hypothetical protein; 88.6 4.3 9.2E-05 33.3 9.0 84 141-226 15-102 (169)
367 PRK06935 2-deoxy-D-gluconate 3 88.6 2.7 5.9E-05 36.3 8.3 82 141-225 14-99 (258)
368 KOG2920 Predicted methyltransf 88.6 0.36 7.8E-06 42.8 2.7 50 128-177 100-153 (282)
369 PRK07576 short chain dehydroge 88.6 3.2 6.9E-05 36.2 8.8 82 141-225 8-94 (264)
370 PRK06505 enoyl-(acyl carrier p 88.5 2.8 6.1E-05 36.8 8.5 83 141-225 6-93 (271)
371 PRK07984 enoyl-(acyl carrier p 88.4 2.9 6.2E-05 36.6 8.4 83 141-225 5-92 (262)
372 PRK07831 short chain dehydroge 88.2 3.7 8.1E-05 35.5 9.0 84 141-226 16-106 (262)
373 PRK06197 short chain dehydroge 88.1 3.4 7.5E-05 36.8 8.8 82 141-225 15-103 (306)
374 PRK07792 fabG 3-ketoacyl-(acyl 88.0 2.9 6.3E-05 37.5 8.3 82 141-225 11-97 (306)
375 PRK08415 enoyl-(acyl carrier p 88.0 3.1 6.7E-05 36.7 8.4 83 141-225 4-91 (274)
376 PRK05717 oxidoreductase; Valid 88.0 3.5 7.6E-05 35.5 8.6 82 141-227 9-94 (255)
377 PRK06500 short chain dehydroge 87.9 4.2 9.1E-05 34.6 9.0 81 141-226 5-89 (249)
378 TIGR03325 BphB_TodD cis-2,3-di 87.5 3.6 7.7E-05 35.7 8.4 81 141-225 4-87 (262)
379 PRK08690 enoyl-(acyl carrier p 87.5 3.4 7.4E-05 36.0 8.3 83 141-225 5-92 (261)
380 PF11968 DUF3321: Putative met 87.4 0.85 1.9E-05 39.0 4.2 63 143-228 53-115 (219)
381 KOG3924 Putative protein methy 87.4 0.65 1.4E-05 43.1 3.7 92 125-225 176-280 (419)
382 PRK07067 sorbitol dehydrogenas 87.4 4.5 9.7E-05 34.8 8.9 80 141-225 5-88 (257)
383 PRK05993 short chain dehydroge 87.3 4.1 8.9E-05 35.7 8.8 77 142-225 4-84 (277)
384 PRK08251 short chain dehydroge 87.3 4.4 9.6E-05 34.6 8.8 80 143-225 3-89 (248)
385 PRK12429 3-hydroxybutyrate deh 87.2 4.6 9.9E-05 34.6 8.9 81 142-225 4-89 (258)
386 PF05206 TRM13: Methyltransfer 87.0 2.1 4.7E-05 37.7 6.6 64 138-202 15-88 (259)
387 PRK07825 short chain dehydroge 87.0 4.3 9.3E-05 35.4 8.7 78 142-225 5-86 (273)
388 PF00107 ADH_zinc_N: Zinc-bind 86.9 1.9 4E-05 33.0 5.7 84 151-244 1-85 (130)
389 PRK07074 short chain dehydroge 86.7 5.4 0.00012 34.3 9.0 79 143-225 3-85 (257)
390 PRK08628 short chain dehydroge 86.7 4.6 0.0001 34.8 8.6 83 141-226 6-92 (258)
391 TIGR01832 kduD 2-deoxy-D-gluco 86.4 4.7 0.0001 34.4 8.5 81 141-225 4-88 (248)
392 PRK06180 short chain dehydroge 86.4 4.5 9.8E-05 35.4 8.5 80 142-225 4-86 (277)
393 PRK08324 short chain dehydroge 86.3 4.1 8.8E-05 41.1 9.1 84 141-226 421-507 (681)
394 PRK06603 enoyl-(acyl carrier p 86.2 4.5 9.8E-05 35.2 8.4 84 141-226 7-95 (260)
395 PRK08416 7-alpha-hydroxysteroi 86.2 4.9 0.00011 34.8 8.6 83 141-225 7-95 (260)
396 PRK09186 flagellin modificatio 86.1 5.3 0.00012 34.2 8.7 82 141-225 3-91 (256)
397 PRK08945 putative oxoacyl-(acy 86.1 6.4 0.00014 33.6 9.2 83 141-225 11-100 (247)
398 PRK08159 enoyl-(acyl carrier p 86.0 4.5 9.7E-05 35.6 8.3 83 141-225 9-96 (272)
399 PF00106 adh_short: short chai 85.9 2.3 5E-05 33.9 5.9 81 144-226 2-89 (167)
400 PRK06701 short chain dehydroge 85.9 4.7 0.0001 35.8 8.4 83 141-225 45-132 (290)
401 PRK06182 short chain dehydroge 85.9 4.9 0.00011 35.0 8.4 78 142-227 3-84 (273)
402 PRK07102 short chain dehydroge 85.8 4.9 0.00011 34.3 8.3 77 143-225 2-84 (243)
403 cd08254 hydroxyacyl_CoA_DH 6-h 85.8 9 0.0002 34.2 10.4 44 138-181 162-207 (338)
404 PRK12384 sorbitol-6-phosphate 85.7 5.2 0.00011 34.4 8.5 81 142-225 2-89 (259)
405 PRK06940 short chain dehydroge 85.6 5.3 0.00011 35.1 8.6 79 143-226 3-85 (275)
406 KOG0822 Protein kinase inhibit 85.6 1.9 4.2E-05 41.6 5.9 60 143-202 369-436 (649)
407 PRK05875 short chain dehydroge 85.5 6.2 0.00013 34.3 8.9 82 141-225 6-94 (276)
408 PRK06914 short chain dehydroge 85.5 6.3 0.00014 34.4 9.0 80 142-225 3-89 (280)
409 PRK06079 enoyl-(acyl carrier p 85.4 5.5 0.00012 34.4 8.4 81 141-225 6-91 (252)
410 PRK09496 trkA potassium transp 85.4 4.9 0.00011 38.0 8.8 89 126-227 213-307 (453)
411 PRK06057 short chain dehydroge 85.4 5.2 0.00011 34.4 8.3 78 141-225 6-87 (255)
412 PF02086 MethyltransfD12: D12 85.1 1.6 3.5E-05 37.9 5.0 55 129-183 8-62 (260)
413 TIGR01289 LPOR light-dependent 85.1 7 0.00015 35.2 9.2 82 142-225 3-89 (314)
414 PTZ00357 methyltransferase; Pr 85.0 2.9 6.3E-05 41.8 6.9 79 144-225 703-800 (1072)
415 PRK05855 short chain dehydroge 84.9 5.2 0.00011 38.8 8.9 81 142-225 315-400 (582)
416 PRK13656 trans-2-enoyl-CoA red 84.9 8.6 0.00019 36.1 9.7 85 141-228 40-142 (398)
417 KOG1205 Predicted dehydrogenas 84.8 7.1 0.00015 34.9 8.8 133 141-281 11-175 (282)
418 PLN02780 ketoreductase/ oxidor 84.8 6.6 0.00014 35.5 9.0 58 141-198 52-115 (320)
419 COG4221 Short-chain alcohol de 84.8 7.3 0.00016 34.0 8.6 81 141-225 5-89 (246)
420 PRK08993 2-deoxy-D-gluconate 3 84.7 5.1 0.00011 34.5 7.9 80 141-225 9-93 (253)
421 PF13561 adh_short_C2: Enoyl-( 84.7 2.3 5.1E-05 36.4 5.7 69 155-225 12-81 (241)
422 COG0300 DltE Short-chain dehyd 84.5 10 0.00023 33.6 9.6 85 141-227 5-94 (265)
423 PRK07889 enoyl-(acyl carrier p 84.5 4.7 0.0001 35.0 7.6 81 141-225 6-93 (256)
424 TIGR02415 23BDH acetoin reduct 84.4 7.8 0.00017 33.1 8.9 80 144-226 2-86 (254)
425 COG2961 ComJ Protein involved 84.4 4 8.6E-05 35.7 6.8 78 146-231 93-170 (279)
426 KOG3350 Uncharacterized conser 84.4 19 0.00042 29.9 10.4 106 119-243 50-167 (217)
427 PRK07806 short chain dehydroge 84.3 7.5 0.00016 33.1 8.7 82 141-225 5-92 (248)
428 PRK05599 hypothetical protein; 84.3 6.5 0.00014 33.8 8.4 79 144-225 2-85 (246)
429 PLN03209 translocon at the inn 84.2 4.6 9.9E-05 39.8 8.0 80 136-225 74-167 (576)
430 PRK06841 short chain dehydroge 84.1 7.8 0.00017 33.2 8.8 82 141-226 14-98 (255)
431 PRK08594 enoyl-(acyl carrier p 84.0 6.6 0.00014 34.1 8.3 82 141-225 6-95 (257)
432 PF05050 Methyltransf_21: Meth 83.9 2.2 4.8E-05 33.9 5.0 50 147-196 1-61 (167)
433 cd08283 FDH_like_1 Glutathione 83.9 3.3 7.1E-05 38.4 6.7 48 135-182 178-228 (386)
434 PRK06198 short chain dehydroge 83.8 6.5 0.00014 33.8 8.2 82 141-225 5-92 (260)
435 PRK03659 glutathione-regulated 83.7 4.7 0.0001 40.0 8.0 69 144-227 402-474 (601)
436 COG5379 BtaA S-adenosylmethion 83.6 3.3 7.2E-05 37.2 6.0 48 137-184 59-106 (414)
437 KOG2352 Predicted spermine/spe 83.5 1.1 2.5E-05 42.6 3.4 75 141-223 295-376 (482)
438 PRK08278 short chain dehydroge 83.5 5.9 0.00013 34.7 7.9 84 141-226 5-99 (273)
439 PRK06114 short chain dehydroge 83.1 8.2 0.00018 33.2 8.6 83 141-226 7-95 (254)
440 PRK12743 oxidoreductase; Provi 83.1 8.4 0.00018 33.2 8.6 81 142-225 2-88 (256)
441 PLN02819 lysine-ketoglutarate 83.0 5.8 0.00013 41.9 8.6 92 142-245 569-676 (1042)
442 PRK06484 short chain dehydroge 82.9 7.6 0.00016 37.4 9.0 81 141-225 268-351 (520)
443 KOG1371 UDP-glucose 4-epimeras 82.9 6 0.00013 36.0 7.5 74 142-223 2-83 (343)
444 PF07669 Eco57I: Eco57I restri 82.7 0.72 1.6E-05 34.8 1.5 15 217-231 2-16 (106)
445 PRK05653 fabG 3-ketoacyl-(acyl 82.7 8.9 0.00019 32.3 8.5 81 142-225 5-90 (246)
446 PRK07201 short chain dehydroge 82.5 7 0.00015 38.9 8.8 82 142-226 371-457 (657)
447 PRK12748 3-ketoacyl-(acyl-carr 82.5 8.8 0.00019 33.0 8.5 82 141-225 4-103 (256)
448 PRK09424 pntA NAD(P) transhydr 82.5 3.2 7E-05 40.3 6.1 44 139-182 162-207 (509)
449 TIGR02632 RhaD_aldol-ADH rhamn 82.3 8.3 0.00018 38.9 9.3 83 141-226 413-502 (676)
450 PF10237 N6-adenineMlase: Prob 82.1 10 0.00022 31.0 8.1 95 123-234 5-102 (162)
451 TIGR00507 aroE shikimate 5-deh 82.1 17 0.00036 32.1 10.2 43 140-184 115-161 (270)
452 PF04378 RsmJ: Ribosomal RNA s 82.1 2.3 5.1E-05 37.2 4.6 78 146-231 62-139 (245)
453 PRK05565 fabG 3-ketoacyl-(acyl 82.1 9.4 0.0002 32.3 8.5 82 142-226 5-92 (247)
454 cd08281 liver_ADH_like1 Zinc-d 81.9 15 0.00032 33.7 10.2 47 135-181 185-234 (371)
455 PRK08703 short chain dehydroge 81.8 11 0.00023 32.0 8.7 83 141-225 5-95 (239)
456 PRK10538 malonic semialdehyde 81.8 11 0.00023 32.4 8.7 77 144-225 2-82 (248)
457 KOG0725 Reductases with broad 81.6 12 0.00027 33.1 9.2 83 141-225 7-97 (270)
458 cd00401 AdoHcyase S-adenosyl-L 81.6 6.4 0.00014 37.2 7.6 62 120-181 179-243 (413)
459 PRK09291 short chain dehydroge 81.4 8.9 0.00019 32.8 8.1 74 143-225 3-81 (257)
460 PRK07775 short chain dehydroge 81.4 12 0.00026 32.7 9.0 81 142-225 10-95 (274)
461 PRK06482 short chain dehydroge 81.2 11 0.00023 32.9 8.7 78 143-225 3-84 (276)
462 PLN02896 cinnamyl-alcohol dehy 81.2 7.7 0.00017 35.4 8.0 58 141-199 9-70 (353)
463 PRK06484 short chain dehydroge 81.2 8.1 0.00018 37.2 8.5 81 141-225 4-87 (520)
464 COG4798 Predicted methyltransf 81.1 2.6 5.7E-05 35.6 4.3 37 137-173 44-83 (238)
465 PRK06997 enoyl-(acyl carrier p 81.0 7.8 0.00017 33.7 7.7 83 141-225 5-92 (260)
466 PRK11524 putative methyltransf 81.0 1.5 3.2E-05 39.2 3.1 33 187-229 7-39 (284)
467 PRK12827 short chain dehydroge 81.0 12 0.00026 31.7 8.7 81 142-225 6-95 (249)
468 PRK07041 short chain dehydroge 80.4 7.7 0.00017 32.6 7.3 70 151-226 5-78 (230)
469 COG1062 AdhC Zn-dependent alco 80.3 5.3 0.00011 36.6 6.3 51 132-182 176-229 (366)
470 PRK09135 pteridine reductase; 80.1 13 0.00029 31.4 8.7 82 141-225 5-93 (249)
471 PRK10669 putative cation:proto 80.0 8.9 0.00019 37.6 8.4 50 143-199 418-471 (558)
472 PRK12745 3-ketoacyl-(acyl-carr 79.7 13 0.00029 31.7 8.6 80 143-225 3-88 (256)
473 PF12242 Eno-Rase_NADH_b: NAD( 79.4 6.9 0.00015 27.8 5.3 34 140-173 37-74 (78)
474 PRK12859 3-ketoacyl-(acyl-carr 79.4 14 0.0003 31.9 8.6 83 141-225 5-104 (256)
475 PRK08063 enoyl-(acyl carrier p 79.3 13 0.00029 31.6 8.5 82 141-225 3-90 (250)
476 PRK09134 short chain dehydroge 79.3 15 0.00033 31.5 8.9 82 141-225 8-95 (258)
477 PRK06179 short chain dehydroge 79.2 8.8 0.00019 33.3 7.4 75 142-226 4-82 (270)
478 PRK08263 short chain dehydroge 79.1 14 0.0003 32.2 8.7 79 142-225 3-85 (275)
479 COG0569 TrkA K+ transport syst 78.6 9.5 0.00021 32.8 7.2 54 144-200 2-57 (225)
480 PRK07985 oxidoreductase; Provi 78.5 13 0.00028 33.0 8.4 83 141-225 48-136 (294)
481 PRK06483 dihydromonapterin red 78.5 13 0.00027 31.5 8.0 77 143-225 3-82 (236)
482 PLN02657 3,8-divinyl protochlo 78.4 9.5 0.00021 35.6 7.7 79 141-225 59-144 (390)
483 PRK12744 short chain dehydroge 78.3 13 0.00029 31.9 8.2 82 141-225 7-97 (257)
484 TIGR02622 CDP_4_6_dhtase CDP-g 78.0 7.6 0.00016 35.3 6.8 77 141-225 3-83 (349)
485 PRK12828 short chain dehydroge 77.9 17 0.00037 30.5 8.6 82 141-226 6-91 (239)
486 cd08230 glucose_DH Glucose deh 77.8 29 0.00062 31.6 10.6 43 139-181 170-217 (355)
487 PRK07832 short chain dehydroge 77.6 14 0.00031 32.1 8.3 79 144-225 2-86 (272)
488 PRK06128 oxidoreductase; Provi 77.6 14 0.0003 32.8 8.3 83 141-226 54-143 (300)
489 PRK12935 acetoacetyl-CoA reduc 77.4 18 0.00038 30.8 8.7 83 141-226 5-93 (247)
490 PRK07856 short chain dehydroge 77.2 12 0.00027 32.0 7.7 76 141-225 5-83 (252)
491 PRK08177 short chain dehydroge 76.9 9 0.0002 32.3 6.6 74 144-225 3-79 (225)
492 PRK05693 short chain dehydroge 76.7 14 0.0003 32.2 7.9 75 144-226 3-81 (274)
493 TIGR03201 dearomat_had 6-hydro 76.6 10 0.00022 34.5 7.3 46 136-181 161-208 (349)
494 PLN02989 cinnamyl-alcohol dehy 76.5 9.7 0.00021 34.1 7.0 75 141-225 4-85 (325)
495 PRK08936 glucose-1-dehydrogena 75.9 20 0.00043 30.9 8.7 83 141-225 6-93 (261)
496 PRK06523 short chain dehydroge 75.9 14 0.00031 31.7 7.7 75 141-225 8-85 (260)
497 cd01065 NAD_bind_Shikimate_DH 75.5 37 0.0008 26.6 9.9 41 141-183 18-63 (155)
498 cd08232 idonate-5-DH L-idonate 75.1 20 0.00043 32.1 8.8 45 137-181 161-208 (339)
499 PLN03154 putative allyl alcoho 74.9 15 0.00031 33.6 7.8 48 136-183 153-203 (348)
500 PRK12938 acetyacetyl-CoA reduc 74.8 21 0.00045 30.3 8.4 82 142-226 3-90 (246)
No 1
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.1e-29 Score=216.71 Aligned_cols=156 Identities=39% Similarity=0.644 Sum_probs=146.2
Q ss_pred CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (281)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~ 193 (281)
.+.+.+||||..++.+++.+++.+.+.+++.|||||+|.|.+|..|++.+.+|++||+|+.+++..++.....+|+++++
T Consensus 3 k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~ 82 (259)
T COG0030 3 RPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVIN 82 (259)
T ss_pred CCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEe
Confidence 34688999999999999999999999999999999999999999999999999999999999999999987667999999
Q ss_pred cCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhh
Q 023482 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273 (281)
Q Consensus 194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s 273 (281)
+|+.+.++++. ..++.||+|+||+++++++.++++....+..+++|+|+|++.||+ +.||++.|+++|
T Consensus 83 ~DaLk~d~~~l-----------~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~-A~pgsk~Yg~Ls 150 (259)
T COG0030 83 GDALKFDFPSL-----------AQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLV-AKPGSKDYGRLS 150 (259)
T ss_pred CchhcCcchhh-----------cCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHh-CCCCCcccchhh
Confidence 99999987531 168999999999999999999999998888999999999999999 999999999999
Q ss_pred hhhhhccC
Q 023482 274 IFVNFYSG 281 (281)
Q Consensus 274 ~l~~~~~~ 281 (281)
+++|++|+
T Consensus 151 V~~q~~~~ 158 (259)
T COG0030 151 VLVQYYAD 158 (259)
T ss_pred hhhhheEE
Confidence 99999986
No 2
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.96 E-value=3.8e-28 Score=217.00 Aligned_cols=156 Identities=35% Similarity=0.549 Sum_probs=145.0
Q ss_pred cCCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---CC
Q 023482 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---ID 187 (281)
Q Consensus 111 ~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~---~~ 187 (281)
+++.+++.+||||+.++.+++.+++.+.+.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++.. .+
T Consensus 6 ~~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~ 85 (294)
T PTZ00338 6 SGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLAS 85 (294)
T ss_pred CCcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 477899999999999999999999999998999999999999999999999888999999999999999998864 35
Q ss_pred CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCC
Q 023482 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTS 267 (281)
Q Consensus 188 ~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~ 267 (281)
+++++++|+.+.++ ..+|.|++|+||++.++++.++++....+..+++|+|+|++.|++ +.||++
T Consensus 86 ~v~ii~~Dal~~~~--------------~~~d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~QkEvA~Rl~-A~pg~k 150 (294)
T PTZ00338 86 KLEVIEGDALKTEF--------------PYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLL-AQPGDE 150 (294)
T ss_pred cEEEEECCHhhhcc--------------cccCEEEecCCcccCcHHHHHHHhcCCCCceeeeeehHHHHHHHh-cCCCCc
Confidence 89999999988653 357999999999999999999998877889999999999999999 999999
Q ss_pred ccchhhhhhhhccC
Q 023482 268 EYRPINIFVNFYSG 281 (281)
Q Consensus 268 ~y~~~s~l~~~~~~ 281 (281)
.|+++||++|+||+
T Consensus 151 ~y~~LSv~~q~~~~ 164 (294)
T PTZ00338 151 LYCRLSVNTQLLCR 164 (294)
T ss_pred ccCHHHHHHHHHhc
Confidence 99999999999986
No 3
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.95 E-value=4e-27 Score=209.12 Aligned_cols=163 Identities=36% Similarity=0.598 Sum_probs=147.5
Q ss_pred HHHHHhcCCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Q 023482 105 IKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (281)
Q Consensus 105 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~ 184 (281)
.+.+..++..+++.+||+|..++.+++.+++.+.+.++++|||||||+|.++..+++.+.+|+|+|+|+.|++.+++++.
T Consensus 6 ~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 6 RELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred HHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc
Confidence 34566678899999999999999999999999998889999999999999999999998899999999999999998775
Q ss_pred CCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCC
Q 023482 185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSL 264 (281)
Q Consensus 185 ~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~p 264 (281)
. ++++++++|+.++++.+ -.++.||+|+||+..++++.+++.....+..+++|+|+|+|.|++ +.|
T Consensus 86 ~-~~v~~i~~D~~~~~~~~------------~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~-a~p 151 (272)
T PRK00274 86 E-DNLTIIEGDALKVDLSE------------LQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIV-AKP 151 (272)
T ss_pred c-CceEEEEChhhcCCHHH------------cCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHc-CCC
Confidence 4 68999999999987532 115899999999999999999997766688999999999999999 999
Q ss_pred CCCccchhhhhhhhccC
Q 023482 265 RTSEYRPINIFVNFYSG 281 (281)
Q Consensus 265 g~~~y~~~s~l~~~~~~ 281 (281)
|++.|+++|+++|+||+
T Consensus 152 g~~~y~~lSv~~~~~~~ 168 (272)
T PRK00274 152 GSKAYGRLSVLVQYYCD 168 (272)
T ss_pred CCccccHHHHHHHHHcc
Confidence 99999999999999986
No 4
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.93 E-value=3.5e-25 Score=195.23 Aligned_cols=151 Identities=34% Similarity=0.589 Sum_probs=137.7
Q ss_pred CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (281)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~ 193 (281)
.+++.+||||..++.+++.+++.+...++++|||||||+|.++..+++.+.+|+|+|+++.+++.+++++...+++++++
T Consensus 2 ~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~ 81 (258)
T PRK14896 2 RMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIE 81 (258)
T ss_pred CCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEE
Confidence 46789999999999999999999998889999999999999999999998899999999999999998886556899999
Q ss_pred cCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhh
Q 023482 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273 (281)
Q Consensus 194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s 273 (281)
+|+.++++ ..+|.|++|+||++.++++.+++. ..+..++++.|+|++.|++ +.||++.|+++|
T Consensus 82 ~D~~~~~~--------------~~~d~Vv~NlPy~i~s~~~~~l~~--~~~~~~~l~~q~e~A~rl~-a~~g~~~yg~ls 144 (258)
T PRK14896 82 GDALKVDL--------------PEFNKVVSNLPYQISSPITFKLLK--HGFEPAVLMYQKEFAERMV-AKPGTKEYGRLS 144 (258)
T ss_pred eccccCCc--------------hhceEEEEcCCcccCcHHHHHHHh--hccceeEEEeeHHHHHHhc-CCCCCccccHHH
Confidence 99998764 236999999999999999998886 3355789999999999999 999999999999
Q ss_pred hhhhhccC
Q 023482 274 IFVNFYSG 281 (281)
Q Consensus 274 ~l~~~~~~ 281 (281)
++.|++|+
T Consensus 145 v~~~~~~~ 152 (258)
T PRK14896 145 VMVQYYAD 152 (258)
T ss_pred HHHHHHee
Confidence 99999875
No 5
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.93 E-value=6.8e-25 Score=192.98 Aligned_cols=155 Identities=36% Similarity=0.626 Sum_probs=138.7
Q ss_pred CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (281)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~ 193 (281)
++++.+||||..++.+++.+++.+...++++|||||||+|.++..+++.+.+|+++|+|+.+++.++.+....+++++++
T Consensus 2 ~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~ 81 (253)
T TIGR00755 2 RPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIE 81 (253)
T ss_pred CCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEE
Confidence 56789999999999999999999998889999999999999999999998899999999999999998876556999999
Q ss_pred cCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhh
Q 023482 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273 (281)
Q Consensus 194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s 273 (281)
+|+.++++.. +| ..+.|++|+||++..+++.+++. ...+..+++++|+|++.|++ +.||++.|+.+|
T Consensus 82 ~D~~~~~~~~--~d---------~~~~vvsNlPy~i~~~il~~ll~-~~~~~~~~~~~q~e~a~Rl~-a~pg~~~y~~ls 148 (253)
T TIGR00755 82 GDALKVDLPD--FP---------KQLKVVSNLPYNISSPLIFKLLE-KPKFRLAVLMVQKEVAERLT-AKPGSKDYGRLS 148 (253)
T ss_pred CchhcCChhH--cC---------CcceEEEcCChhhHHHHHHHHhc-cCCCceEEEEehHHHHHHHc-cCCCCCcccHHH
Confidence 9999987531 11 11599999999999999999995 34457899999999999999 999999999999
Q ss_pred hhhhhccC
Q 023482 274 IFVNFYSG 281 (281)
Q Consensus 274 ~l~~~~~~ 281 (281)
+++|++|+
T Consensus 149 v~~~~~~~ 156 (253)
T TIGR00755 149 VLVQYFAN 156 (253)
T ss_pred HHHHHHcc
Confidence 99999986
No 6
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.92 E-value=2.3e-24 Score=178.40 Aligned_cols=139 Identities=38% Similarity=0.582 Sum_probs=126.3
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHH
Q 023482 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209 (281)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v 209 (281)
.+.+++.+.+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...++++++++|+.++++.+
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~------ 75 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPK------ 75 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccc------
Confidence 45677888888888999999999999999999988999999999999999999876568999999999987532
Q ss_pred HhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCccchhhhhhhhccC
Q 023482 210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSG 281 (281)
Q Consensus 210 ~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~y~~~s~l~~~~~~ 281 (281)
..+|.|++|+||+...+++.++++....+..+.+++|++++.|+. +.||++.|+.+|+++|++|+
T Consensus 76 ------~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~-~~~~~~~y~~lsv~~~~~~~ 140 (169)
T smart00650 76 ------LQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLA-AKPGSKDYGRLSVLLQPYFD 140 (169)
T ss_pred ------cCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhc-CCCCCCcccHHHHHHHHHee
Confidence 358999999999999999999998877778999999999999999 99999999999999999985
No 7
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=99.92 E-value=2.1e-24 Score=184.84 Aligned_cols=154 Identities=38% Similarity=0.587 Sum_probs=145.2
Q ss_pred CCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CC
Q 023482 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQ 188 (281)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~ 188 (281)
+..+...+|||+..++.+++.+++...+.+++.|||||.|||.+|..|.+.+++|+|+|+|+.|++...++.... +.
T Consensus 29 ~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~k 108 (315)
T KOG0820|consen 29 GSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGK 108 (315)
T ss_pred CcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccce
Confidence 577888999999999999999999999999999999999999999999999999999999999999999988754 38
Q ss_pred eEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhHHHHhcCCCCCCCc
Q 023482 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSE 268 (281)
Q Consensus 189 v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~ 268 (281)
.++++||+.+.++ ..||.+|+|+||+++++++++++..+..+..+++|+|.|++.|++ +.||++.
T Consensus 109 LqV~~gD~lK~d~--------------P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLv-a~pgd~~ 173 (315)
T KOG0820|consen 109 LQVLHGDFLKTDL--------------PRFDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLV-ARPGDSL 173 (315)
T ss_pred eeEEecccccCCC--------------cccceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhhc-cCCCCch
Confidence 9999999998764 579999999999999999999999999999999999999999999 9999999
Q ss_pred cchhhhhhhhcc
Q 023482 269 YRPINIFVNFYS 280 (281)
Q Consensus 269 y~~~s~l~~~~~ 280 (281)
|.++|+.+|++-
T Consensus 174 Ycrlsin~q~~a 185 (315)
T KOG0820|consen 174 YCRLSINVQLLA 185 (315)
T ss_pred hceeehhhHHhh
Confidence 999999999863
No 8
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=99.90 E-value=5e-23 Score=181.95 Aligned_cols=158 Identities=35% Similarity=0.602 Sum_probs=141.2
Q ss_pred CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (281)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~ 193 (281)
.++..+||||..++.+++.+++.+.+.++..|||||+|+|.+|..|++.+.+++++|+|+.+++..++.+...+++++++
T Consensus 3 k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~ 82 (262)
T PF00398_consen 3 KPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVIN 82 (262)
T ss_dssp SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEE
T ss_pred CCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeee
Confidence 56788999999999999999999999999999999999999999999999999999999999999999888667999999
Q ss_pred cCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCC-cceEEEeehhhHHHHhcCCCCCCCccchh
Q 023482 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI-FSEVVLLLQEETALRLVEPSLRTSEYRPI 272 (281)
Q Consensus 194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~-~~~~~~~~~~~~a~rl~~~~pg~~~y~~~ 272 (281)
+|+.+++..+. .......||+|+||+..++++.+++..... ...+.+++|+|++.|++ +.||++.|+++
T Consensus 83 ~D~l~~~~~~~---------~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~-a~pg~~~~~~l 152 (262)
T PF00398_consen 83 GDFLKWDLYDL---------LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLL-AKPGSKRYSRL 152 (262)
T ss_dssp S-TTTSCGGGH---------CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHH-TSTTSTTCSHH
T ss_pred cchhccccHHh---------hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhcc-CCCCCCccchh
Confidence 99999876431 124678999999999999999999973333 57899999999999999 99999999999
Q ss_pred hhhhhhccC
Q 023482 273 NIFVNFYSG 281 (281)
Q Consensus 273 s~l~~~~~~ 281 (281)
|+++|+|||
T Consensus 153 sv~~q~~~~ 161 (262)
T PF00398_consen 153 SVLAQAFFD 161 (262)
T ss_dssp HHHHHHHEE
T ss_pred hhhhhhhhc
Confidence 999999985
No 9
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.64 E-value=9.7e-15 Score=125.40 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=112.3
Q ss_pred HHHHHhHhhhccCC-CcHHHHHHHHHhcCCC---CC-----------cccC-ccccCCHHHHHHHHHHhcCCCCCEEEEE
Q 023482 85 GAASACIVCARSQD-DDYHATIKALNSKGRF---PR-----------KSLG-QHYMLNSEINDQLAAAAAVQEGDIVLEI 148 (281)
Q Consensus 85 ~~r~~mv~~~~r~~-~~~~~~~~~~~~~~~~---~~-----------~~~g-~~~~~~~~~~~~l~~~l~~~~~~~VLDi 148 (281)
..++.|++.+.+.+ .....+.+.+.+.... +. ..++ ...+..+.....+++.+.+.++.+||||
T Consensus 5 ~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDi 84 (215)
T TIGR00080 5 SQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEI 84 (215)
T ss_pred HHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEE
Confidence 44678999988865 5666666666644211 11 1111 2255667888999999999999999999
Q ss_pred cCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEE
Q 023482 149 GPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (281)
Q Consensus 149 GcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~ 223 (281)
|||+|+++..+++.. .+|+++|+++++++.|++++...+ +++++++|+.+... ....||+|+.
T Consensus 85 G~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~------------~~~~fD~Ii~ 152 (215)
T TIGR00080 85 GTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE------------PLAPYDRIYV 152 (215)
T ss_pred CCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc------------ccCCCCEEEE
Confidence 999999999999873 369999999999999999987654 89999999977532 2357999999
Q ss_pred cCCCcccHHHHHHhccCCCCcc
Q 023482 224 NIPFNISTDVIKQLLPMGDIFS 245 (281)
Q Consensus 224 n~P~~~~~~~~~~ll~~~~~~~ 245 (281)
+.+.....+.+.+.++++|.+.
T Consensus 153 ~~~~~~~~~~~~~~L~~gG~lv 174 (215)
T TIGR00080 153 TAAGPKIPEALIDQLKEGGILV 174 (215)
T ss_pred cCCcccccHHHHHhcCcCcEEE
Confidence 8766655666677778888753
No 10
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.62 E-value=2.4e-14 Score=122.76 Aligned_cols=145 Identities=18% Similarity=0.203 Sum_probs=110.9
Q ss_pred HHHhHhhhccCC-CcHHHHHHHHHhcCCC---CC-------------cccCccccCCHHHHHHHHHHhcCCCCCEEEEEc
Q 023482 87 ASACIVCARSQD-DDYHATIKALNSKGRF---PR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149 (281)
Q Consensus 87 r~~mv~~~~r~~-~~~~~~~~~~~~~~~~---~~-------------~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiG 149 (281)
++.|++.+.|.+ .....+.+.+.....+ +. -..|+ .++.+.+...+++.+.+.++.+|||||
T Consensus 6 ~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~-~~~~p~~~~~~~~~l~~~~g~~VLdIG 84 (212)
T PRK13942 6 KRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQ-TISAIHMVAIMCELLDLKEGMKVLEIG 84 (212)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCC-EeCcHHHHHHHHHHcCCCCcCEEEEEC
Confidence 467999999866 5677777776644211 00 11233 567899999999999999999999999
Q ss_pred CCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEc
Q 023482 150 PGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (281)
Q Consensus 150 cG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n 224 (281)
||+|+++..+++. .++|+++|+++++++.|++++...+ +++++++|+.+... ....||+|+.+
T Consensus 85 ~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~------------~~~~fD~I~~~ 152 (212)
T PRK13942 85 TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE------------ENAPYDRIYVT 152 (212)
T ss_pred CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC------------cCCCcCEEEEC
Confidence 9999999999876 2699999999999999999987653 89999999987542 23679999887
Q ss_pred CCCcccHHHHHHhccCCCCc
Q 023482 225 IPFNISTDVIKQLLPMGDIF 244 (281)
Q Consensus 225 ~P~~~~~~~~~~ll~~~~~~ 244 (281)
.........+...++++|.+
T Consensus 153 ~~~~~~~~~l~~~LkpgG~l 172 (212)
T PRK13942 153 AAGPDIPKPLIEQLKDGGIM 172 (212)
T ss_pred CCcccchHHHHHhhCCCcEE
Confidence 54444445566677788865
No 11
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.60 E-value=4.6e-14 Score=120.35 Aligned_cols=110 Identities=14% Similarity=0.208 Sum_probs=91.3
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~ 196 (281)
.+..+.+...+++.+.+.++.+|||+|||+|+.+..+++. +++|+++|+++++++.|++++...+ +++++++|+
T Consensus 54 ~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~ 133 (205)
T PRK13944 54 TISAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG 133 (205)
T ss_pred EechHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc
Confidence 5566778899999999888899999999999999999875 3699999999999999999887553 599999999
Q ss_pred cccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF 244 (281)
Q Consensus 197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~ 244 (281)
.+... ..+.||+|+++.......+.+.+.+++||.+
T Consensus 134 ~~~~~------------~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~l 169 (205)
T PRK13944 134 KRGLE------------KHAPFDAIIVTAAASTIPSALVRQLKDGGVL 169 (205)
T ss_pred ccCCc------------cCCCccEEEEccCcchhhHHHHHhcCcCcEE
Confidence 87532 2267999999877766666777778888876
No 12
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.3e-14 Score=117.78 Aligned_cols=132 Identities=22% Similarity=0.306 Sum_probs=103.4
Q ss_pred CCCCCcccCccccCCHHHHHHHHHHhc---CCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC-
Q 023482 112 GRFPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI- 186 (281)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~- 186 (281)
..+++.++.| |.++..++..++..+. .-.+.+|+|+|||||.+++..+-.|+ .|+|||+|+++++.+++|.++.
T Consensus 14 f~~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~ 92 (198)
T COG2263 14 FPNPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL 92 (198)
T ss_pred CCCCCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC
Confidence 4567778888 9999999988887763 33677899999999999999999975 9999999999999999999865
Q ss_pred CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc-----cHHHHHHhccCCCCcceEEEeehhhHHHHh
Q 023482 187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-----STDVIKQLLPMGDIFSEVVLLLQEETALRL 259 (281)
Q Consensus 187 ~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-----~~~~~~~ll~~~~~~~~~~~~~~~~~a~rl 259 (281)
+++.|+++|+.++. +.+|.+|.||||.. ..+++.+.++-+..+.....--..++..+.
T Consensus 93 g~v~f~~~dv~~~~---------------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~ 155 (198)
T COG2263 93 GDVEFVVADVSDFR---------------GKFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKF 155 (198)
T ss_pred CceEEEEcchhhcC---------------CccceEEECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHHHHHH
Confidence 48999999999875 67899999999953 447777777665544443333333443333
No 13
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5e-14 Score=118.50 Aligned_cols=111 Identities=22% Similarity=0.374 Sum_probs=92.7
Q ss_pred CccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482 120 GQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (281)
Q Consensus 120 g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~ 197 (281)
|+ ++..+.+...|++.+.+.++++|||||||+||.+..|++...+|++||+++...+.|++++...+ ||.+++||..
T Consensus 52 gq-tis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~ 130 (209)
T COG2518 52 GQ-TISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGS 130 (209)
T ss_pred Cc-eecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc
Confidence 44 88899999999999999999999999999999999999998899999999999999999998765 8999999998
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCC-cccHHHHHHhccCCCC
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF-NISTDVIKQLLPMGDI 243 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~-~~~~~~~~~ll~~~~~ 243 (281)
.-- .....||.|+..--. .....++++|..+|..
T Consensus 131 ~G~------------~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrl 165 (209)
T COG2518 131 KGW------------PEEAPYDRIIVTAAAPEVPEALLDQLKPGGRL 165 (209)
T ss_pred cCC------------CCCCCcCEEEEeeccCCCCHHHHHhcccCCEE
Confidence 752 234789999986433 3445566666655443
No 14
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=1.5e-14 Score=124.89 Aligned_cols=115 Identities=16% Similarity=0.231 Sum_probs=87.3
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcccc
Q 023482 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC 199 (281)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~ 199 (281)
-.+..+.+.+++.+...+|.+|||+|||||.++..+++.. ++|+|+|+|+.|++.|+++..+.+ ++++++||++++
T Consensus 34 g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 34 GLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred cchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence 3456678888888888789999999999999999999984 699999999999999999988643 699999999999
Q ss_pred ccccchhhHHHhhcCCCCccEEEEcCCC-cccHHHHHHhccCCCCcc
Q 023482 200 HIRSHMLSLFERRKSSSGFAKVVANIPF-NISTDVIKQLLPMGDIFS 245 (281)
Q Consensus 200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~-~~~~~~~~~ll~~~~~~~ 245 (281)
||+|++||.+.+ ..-+-|.+- ...-..+.|+++++|.+.
T Consensus 114 Pf~D~sFD~vt~-------~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 114 PFPDNSFDAVTI-------SFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred CCCCCccCEEEe-------eehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 999865554321 111113331 222244568888888653
No 15
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.55 E-value=4.4e-14 Score=120.46 Aligned_cols=146 Identities=18% Similarity=0.294 Sum_probs=101.7
Q ss_pred HHHhHhhhccCC-CcHHHHHHHHHhcCC---CCCcc-----------cC-ccccCCHHHHHHHHHHhcCCCCCEEEEEcC
Q 023482 87 ASACIVCARSQD-DDYHATIKALNSKGR---FPRKS-----------LG-QHYMLNSEINDQLAAAAAVQEGDIVLEIGP 150 (281)
Q Consensus 87 r~~mv~~~~r~~-~~~~~~~~~~~~~~~---~~~~~-----------~g-~~~~~~~~~~~~l~~~l~~~~~~~VLDiGc 150 (281)
+..|++++.+.. .....+.+.+.+... -+..+ .+ ...++.|.+..++++.+.++++.+||||||
T Consensus 2 ~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l~pg~~VLeIGt 81 (209)
T PF01135_consen 2 NKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALDLKPGDRVLEIGT 81 (209)
T ss_dssp HHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTTC-TT-EEEEES-
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 467888888755 677777777765421 11111 11 236778999999999999999999999999
Q ss_pred CccHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC
Q 023482 151 GTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (281)
Q Consensus 151 G~G~~t~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~ 225 (281)
|+||.+..|+.. + .+|++||+++..++.|++++...+ |++++++|..... .....||.|+.+.
T Consensus 82 GsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~------------~~~apfD~I~v~~ 149 (209)
T PF01135_consen 82 GSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW------------PEEAPFDRIIVTA 149 (209)
T ss_dssp TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT------------GGG-SEEEEEESS
T ss_pred CCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc------------ccCCCcCEEEEee
Confidence 999999999987 3 379999999999999999998654 9999999987642 2336799999986
Q ss_pred CCcccHHHHHHhccCCCCc
Q 023482 226 PFNISTDVIKQLLPMGDIF 244 (281)
Q Consensus 226 P~~~~~~~~~~ll~~~~~~ 244 (281)
.....+..+...|+.||.+
T Consensus 150 a~~~ip~~l~~qL~~gGrL 168 (209)
T PF01135_consen 150 AVPEIPEALLEQLKPGGRL 168 (209)
T ss_dssp BBSS--HHHHHTEEEEEEE
T ss_pred ccchHHHHHHHhcCCCcEE
Confidence 5544444444445555554
No 16
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.54 E-value=2.8e-13 Score=116.03 Aligned_cols=150 Identities=16% Similarity=0.211 Sum_probs=111.7
Q ss_pred hHHHHHHhHhhhcc-CCCcHHHHHHHHHhcCCC---CCc----cc--------CccccCCHHHHHHHHHHhcCCCCCEEE
Q 023482 83 QKGAASACIVCARS-QDDDYHATIKALNSKGRF---PRK----SL--------GQHYMLNSEINDQLAAAAAVQEGDIVL 146 (281)
Q Consensus 83 ~~~~r~~mv~~~~r-~~~~~~~~~~~~~~~~~~---~~~----~~--------g~~~~~~~~~~~~l~~~l~~~~~~~VL 146 (281)
.++.|..|++ +++ .......+.+.+...... +.. .| ...++..+....++++.+.+.++.+||
T Consensus 5 ~~~~~~~~v~-~l~~~~~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VL 83 (212)
T PRK00312 5 ESERFARLVL-RLRAEGILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVL 83 (212)
T ss_pred HHHHHHHHHH-HHHHcCCCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEE
Confidence 3566888998 655 334555666666654221 111 01 112467888999999999998999999
Q ss_pred EEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEc
Q 023482 147 EIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (281)
Q Consensus 147 DiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n 224 (281)
|+|||+|+++..++....+|+++|+++++++.|++++...+ +++++++|+.+.. ...+.||+|+.+
T Consensus 84 eiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~~~~~fD~I~~~ 151 (212)
T PRK00312 84 EIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW------------PAYAPFDRILVT 151 (212)
T ss_pred EECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC------------CcCCCcCEEEEc
Confidence 99999999999888876799999999999999999987653 7999999986532 122679999998
Q ss_pred CCCcccHHHHHHhccCCCCcc
Q 023482 225 IPFNISTDVIKQLLPMGDIFS 245 (281)
Q Consensus 225 ~P~~~~~~~~~~ll~~~~~~~ 245 (281)
.+.......+.+.++++|.+.
T Consensus 152 ~~~~~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 152 AAAPEIPRALLEQLKEGGILV 172 (212)
T ss_pred cCchhhhHHHHHhcCCCcEEE
Confidence 776666666777888888753
No 17
>PHA03412 putative methyltransferase; Provisional
Probab=99.54 E-value=6e-14 Score=120.44 Aligned_cols=108 Identities=14% Similarity=0.256 Sum_probs=84.6
Q ss_pred HHHHHHHhcCCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-----CCEEEEEeCCHHHHH
Q 023482 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVG 177 (281)
Q Consensus 103 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-----~~~v~gvD~s~~~l~ 177 (281)
.+.+-+.+.....+...|| |+++..++..+.... ..+.+|||+|||+|.++..+++. ..+|++||+++.+++
T Consensus 14 f~~~n~~~~~~~~~~~~Gq-FfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~ 90 (241)
T PHA03412 14 FIIENFHEGAFTNNSELGA-FFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYK 90 (241)
T ss_pred HHHhhcccccccccccCCc-cCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHH
Confidence 3344444434455666777 999999988876432 24679999999999999998874 358999999999999
Q ss_pred HHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 178 LVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 178 ~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
.|+++.. ++.++++|+...++ .++||+||+||||..
T Consensus 91 ~Ar~n~~---~~~~~~~D~~~~~~-------------~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 91 LGKRIVP---EATWINADALTTEF-------------DTLFDMAISNPPFGK 126 (241)
T ss_pred HHHhhcc---CCEEEEcchhcccc-------------cCCccEEEECCCCCC
Confidence 9998865 68899999986542 257999999999974
No 18
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.51 E-value=5.7e-14 Score=121.91 Aligned_cols=112 Identities=17% Similarity=0.293 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccc
Q 023482 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH 200 (281)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~ 200 (281)
++.+.+.+++.+...++.+|||+|||||.++..+++. .++|+|+|+|++|++.|+++.... .+|+++++|++++|
T Consensus 32 ~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp 111 (233)
T PF01209_consen 32 DRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP 111 (233)
T ss_dssp -----SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--
T ss_pred HHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc
Confidence 3455667777777888999999999999999999886 359999999999999999988754 39999999999999
Q ss_pred cccchhhHHHhhcCCCCccEEEEcCCC------cccHHHHHHhccCCCCcceEEE
Q 023482 201 IRSHMLSLFERRKSSSGFAKVVANIPF------NISTDVIKQLLPMGDIFSEVVL 249 (281)
Q Consensus 201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~------~~~~~~~~~ll~~~~~~~~~~~ 249 (281)
++| ++||+|++..-+ ...-..+.+++++||.+...-+
T Consensus 112 ~~d------------~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 112 FPD------------NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp S-T------------T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCC------------CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence 876 566777764322 2222455688899988754443
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.47 E-value=3.5e-13 Score=103.18 Aligned_cols=72 Identities=31% Similarity=0.443 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCccHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCc-cccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDF-VKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~--~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~-~~~~~~d~~~d~v~~~~~ 214 (281)
|+.+|||||||+|.++..+++ .+.+|+|||+|+++++.|+++... .++++++++|+ .... .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------------~ 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-------------F 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-------------T
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-------------c
Confidence 467999999999999999999 588999999999999999999832 24999999999 3322 2
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+.||+|+.+.
T Consensus 68 ~~~~D~v~~~~ 78 (112)
T PF12847_consen 68 LEPFDLVICSG 78 (112)
T ss_dssp SSCEEEEEECS
T ss_pred CCCCCEEEECC
Confidence 36799999987
No 20
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.45 E-value=3.7e-13 Score=111.40 Aligned_cols=102 Identities=23% Similarity=0.415 Sum_probs=76.7
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccch
Q 023482 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM 205 (281)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~ 205 (281)
...+++.+...++.+|||+|||+|.++..+++... +|+++|+++.+++.+++++..++ +++++++|..+..
T Consensus 20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~----- 94 (170)
T PF05175_consen 20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL----- 94 (170)
T ss_dssp HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-----
T ss_pred HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-----
Confidence 33455555544678999999999999999999844 69999999999999999998764 4999999987642
Q ss_pred hhHHHhhcCCCCccEEEEcCCCcccHH----HH-------HHhccCCCCc
Q 023482 206 LSLFERRKSSSGFAKVVANIPFNISTD----VI-------KQLLPMGDIF 244 (281)
Q Consensus 206 ~d~v~~~~~~~~~d~Vi~n~P~~~~~~----~~-------~~ll~~~~~~ 244 (281)
..+.||.|++|||++.... .. .++|+++|.+
T Consensus 95 --------~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 95 --------PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp --------CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred --------cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEE
Confidence 2478999999999965543 22 3666776655
No 21
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.45 E-value=3.3e-13 Score=115.15 Aligned_cols=150 Identities=21% Similarity=0.255 Sum_probs=99.5
Q ss_pred HHhcCCCCCcccCccccCCHHHHHHHHHHhcC---CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Q 023482 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (281)
Q Consensus 108 ~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~ 184 (281)
+.....+....|.+-...++-....+.+.+.. .++.+|||||||-|.++..||+.|++|+|+|+++++++.|+.+..
T Consensus 23 la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~ 102 (243)
T COG2227 23 LASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHAL 102 (243)
T ss_pred HHhhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhh
Confidence 33334445555544334444444445544443 478899999999999999999999999999999999999999887
Q ss_pred CCC-CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCC-cccHHH-----HHHhccCCCCcceEEE--------
Q 023482 185 SID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF-NISTDV-----IKQLLPMGDIFSEVVL-------- 249 (281)
Q Consensus 185 ~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~-~~~~~~-----~~~ll~~~~~~~~~~~-------- 249 (281)
..+ ++.+....++++. ...++||+|++.--. |...+. +.++++++|.+-..+.
T Consensus 103 e~gv~i~y~~~~~edl~------------~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~ 170 (243)
T COG2227 103 ESGVNIDYRQATVEDLA------------SAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYL 170 (243)
T ss_pred hccccccchhhhHHHHH------------hcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHH
Confidence 665 6667777777654 233789999985322 233333 4688888886633332
Q ss_pred --eehhhHHHHhcCCCCCCCccch
Q 023482 250 --LLQEETALRLVEPSLRTSEYRP 271 (281)
Q Consensus 250 --~~~~~~a~rl~~~~pg~~~y~~ 271 (281)
.+..++..+++ +.|++.|.+
T Consensus 171 ~~i~~ae~vl~~v--P~gTH~~~k 192 (243)
T COG2227 171 LAIIGAEYVLRIV--PKGTHDYRK 192 (243)
T ss_pred HHHHHHHHHHHhc--CCcchhHHH
Confidence 23345556665 344555544
No 22
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=8.6e-13 Score=110.01 Aligned_cols=83 Identities=29% Similarity=0.343 Sum_probs=69.1
Q ss_pred HHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHH
Q 023482 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFE 210 (281)
Q Consensus 132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~ 210 (281)
.+...+...++++|||+|||+|.++..++..+.+|+++|+++.+++.++++...++ +++++++|+.+..
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---------- 79 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---------- 79 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc----------
Confidence 34444445567899999999999999999987799999999999999999987554 7889999987642
Q ss_pred hhcCCCCccEEEEcCCCc
Q 023482 211 RRKSSSGFAKVVANIPFN 228 (281)
Q Consensus 211 ~~~~~~~~d~Vi~n~P~~ 228 (281)
.++||.|++|+||.
T Consensus 80 ----~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 80 ----RGKFDVILFNPPYL 93 (179)
T ss_pred ----CCcccEEEECCCCC
Confidence 25799999999995
No 23
>PLN02244 tocopherol O-methyltransferase
Probab=99.44 E-value=2e-12 Score=118.43 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcC-----CCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcc
Q 023482 127 SEINDQLAAAAAV-----QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV 197 (281)
Q Consensus 127 ~~~~~~l~~~l~~-----~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~ 197 (281)
..+.+.+++.+.+ .++++|||||||+|.++..+++. +++|+|||+++.+++.|+++.... ++++++++|+.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~ 178 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL 178 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc
Confidence 3456777777776 67789999999999999999987 789999999999999999887644 37999999999
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCccc------HHHHHHhccCCCCcceE
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS------TDVIKQLLPMGDIFSEV 247 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~------~~~~~~ll~~~~~~~~~ 247 (281)
++++++ +.||+|+++..++.. -..+.+++++||.+...
T Consensus 179 ~~~~~~------------~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 179 NQPFED------------GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred cCCCCC------------CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 988654 678888886443221 12345888898876443
No 24
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.44 E-value=3.2e-13 Score=104.29 Aligned_cols=79 Identities=28% Similarity=0.407 Sum_probs=65.4
Q ss_pred CCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
|.+|||+|||+|.++..+++.+ .+++|+|+++..++.|+.++... ++++++++|+.+.... ...++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----------~~~~~ 70 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP----------LPDGK 70 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT----------CTTT-
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh----------ccCce
Confidence 4689999999999999999997 89999999999999999998765 3799999999887511 23478
Q ss_pred ccEEEEcCCCccc
Q 023482 218 FAKVVANIPFNIS 230 (281)
Q Consensus 218 ~d~Vi~n~P~~~~ 230 (281)
||+|++||||...
T Consensus 71 ~D~Iv~npP~~~~ 83 (117)
T PF13659_consen 71 FDLIVTNPPYGPR 83 (117)
T ss_dssp EEEEEE--STTSB
T ss_pred eEEEEECCCCccc
Confidence 9999999999753
No 25
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.44 E-value=1.2e-12 Score=115.80 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHhcC-----CCCeEEEEcCccc
Q 023482 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVK 198 (281)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~-----~~~v~~~~gD~~~ 198 (281)
..+...+++.+.+.++.+|||+|||+|.++..+++. + .+|+|+|+|++|++.|+++... ..+++++++|+.+
T Consensus 59 ~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 59 RIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 344555566777778899999999999999999876 3 5999999999999999876531 2489999999999
Q ss_pred cccccchhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceEE
Q 023482 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEVV 248 (281)
Q Consensus 199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~~ 248 (281)
+|+++ ++||.|+++.-++... ..+.+++++||.+....
T Consensus 139 lp~~~------------~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 139 LPFDD------------CYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred CCCCC------------CCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 98754 5688888865444321 33458889998874443
No 26
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.44 E-value=3.5e-13 Score=116.61 Aligned_cols=87 Identities=21% Similarity=0.345 Sum_probs=72.5
Q ss_pred HHHhcCCCCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhH
Q 023482 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSL 208 (281)
Q Consensus 134 ~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~ 208 (281)
..+.......+|||+|||+|.+++.++++ . ++++|||+++++.+.|++++..++ +++++++|+.++...
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~------ 110 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA------ 110 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc------
Confidence 34444455779999999999999999998 4 799999999999999999998653 999999999987643
Q ss_pred HHhhcCCCCccEEEEcCCCccc
Q 023482 209 FERRKSSSGFAKVVANIPFNIS 230 (281)
Q Consensus 209 v~~~~~~~~~d~Vi~n~P~~~~ 230 (281)
....+||+||+||||...
T Consensus 111 ----~~~~~fD~Ii~NPPyf~~ 128 (248)
T COG4123 111 ----LVFASFDLIICNPPYFKQ 128 (248)
T ss_pred ----ccccccCEEEeCCCCCCC
Confidence 334579999999999643
No 27
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.43 E-value=4e-13 Score=117.87 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccc
Q 023482 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH 204 (281)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~ 204 (281)
....+.+.+++.+...++.+|||+|||+|.++..++..+.+|+++|+|+.|++.|+++.. ...++++|+.++++.+
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~~~~- 101 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA---ADHYLAGDIESLPLAT- 101 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCcCCC-
Confidence 345667778888876667899999999999999999888999999999999999998754 4578999999887543
Q ss_pred hhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482 205 MLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV 247 (281)
Q Consensus 205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~ 247 (281)
+.||+|++|.++++.. ..+.++++++|.+...
T Consensus 102 -----------~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 102 -----------ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred -----------CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 5799999998877643 2334778888876443
No 28
>PRK14967 putative methyltransferase; Provisional
Probab=99.43 E-value=1.1e-12 Score=113.25 Aligned_cols=91 Identities=24% Similarity=0.332 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccc
Q 023482 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSH 204 (281)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~ 204 (281)
..++..++..+...++++|||+|||+|.++..++..+. +|+++|+++.+++.++++....+ +++++++|+.+.
T Consensus 22 s~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~----- 96 (223)
T PRK14967 22 TQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA----- 96 (223)
T ss_pred HHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-----
Confidence 34444555555666788999999999999999998765 99999999999999999887554 688999998763
Q ss_pred hhhHHHhhcCCCCccEEEEcCCCccc
Q 023482 205 MLSLFERRKSSSGFAKVVANIPFNIS 230 (281)
Q Consensus 205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~ 230 (281)
.....||+|++||||...
T Consensus 97 --------~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 97 --------VEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred --------ccCCCeeEEEECCCCCCC
Confidence 123679999999998754
No 29
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.43 E-value=2e-12 Score=118.04 Aligned_cols=95 Identities=23% Similarity=0.258 Sum_probs=82.6
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH 200 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~ 200 (281)
-...+.++..++......++.+|||+|||+|.++..++..+.+++|+|+++.|++.|+.|++..+ +++++++|+.+++
T Consensus 164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~ 243 (329)
T TIGR01177 164 GSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP 243 (329)
T ss_pred CCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC
Confidence 44567888888888888889999999999999999888888999999999999999999987553 6899999999987
Q ss_pred cccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 201 IRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
+. .+.||.|++||||..
T Consensus 244 ~~------------~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 244 LS------------SESVDAIATDPPYGR 260 (329)
T ss_pred cc------------cCCCCEEEECCCCcC
Confidence 53 367999999999964
No 30
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.42 E-value=2e-12 Score=111.98 Aligned_cols=109 Identities=13% Similarity=0.221 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcccc
Q 023482 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKC 199 (281)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~ 199 (281)
....+.+.+++.+.+.++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.|+++.... ++++++++|+.++
T Consensus 29 ~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 108 (231)
T TIGR02752 29 RHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL 108 (231)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC
Confidence 45566777888888888899999999999999999875 359999999999999999887643 4899999999987
Q ss_pred ccccchhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcc
Q 023482 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFS 245 (281)
Q Consensus 200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~ 245 (281)
++.+ ++||+|+++..+++.. ..+.+++++||.+.
T Consensus 109 ~~~~------------~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 109 PFDD------------NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148 (231)
T ss_pred CCCC------------CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEE
Confidence 7532 5789998876654432 22357778888663
No 31
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.41 E-value=2e-12 Score=119.29 Aligned_cols=106 Identities=15% Similarity=0.207 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-----CeEEEEcCcccccc
Q 023482 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHI 201 (281)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-----~v~~~~gD~~~~~~ 201 (281)
-.+.+++.+....+.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++..++ +++++.+|+.+.
T Consensus 216 GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-- 293 (378)
T PRK15001 216 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-- 293 (378)
T ss_pred HHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--
Confidence 3566778887655679999999999999999987 5699999999999999999886442 688999988652
Q ss_pred ccchhhHHHhhcCCCCccEEEEcCCCcccH--------HHH---HHhccCCCCcceE
Q 023482 202 RSHMLSLFERRKSSSGFAKVVANIPFNIST--------DVI---KQLLPMGDIFSEV 247 (281)
Q Consensus 202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~--------~~~---~~ll~~~~~~~~~ 247 (281)
...+.||+|++||||+... .++ .+.++++|.+...
T Consensus 294 -----------~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 294 -----------VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred -----------CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 1235799999999997542 222 3667788766433
No 32
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.41 E-value=1.9e-12 Score=114.50 Aligned_cols=122 Identities=18% Similarity=0.287 Sum_probs=94.5
Q ss_pred CCCcccCccccCCH--HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeE
Q 023482 114 FPRKSLGQHYMLNS--EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLK 190 (281)
Q Consensus 114 ~~~~~~g~~~~~~~--~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~ 190 (281)
.....||..+..+. +....++..+.+.++.+|||||||+|..+..++.. +++|+|+|+++.+++.|+++....++++
T Consensus 23 ~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~ 102 (263)
T PTZ00098 23 AYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIE 102 (263)
T ss_pred hHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceE
Confidence 34445676676664 45788888898889999999999999999999875 6799999999999999999876556899
Q ss_pred EEEcCccccccccchhhHHHhhcCCCCccEEEEcCC-Cccc----H---HHHHHhccCCCCcceE
Q 023482 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP-FNIS----T---DVIKQLLPMGDIFSEV 247 (281)
Q Consensus 191 ~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P-~~~~----~---~~~~~ll~~~~~~~~~ 247 (281)
++++|+.+.++++ +.||+|+++.. ++.. . ..+.++++++|.+...
T Consensus 103 ~~~~D~~~~~~~~------------~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 103 FEANDILKKDFPE------------NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred EEECCcccCCCCC------------CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999999877543 67899998532 2222 1 2235888999887543
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.41 E-value=2.7e-12 Score=108.74 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=77.3
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHH
Q 023482 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFE 210 (281)
Q Consensus 133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~ 210 (281)
+++.+...++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.++++....+ ++++..+|+.+.++.
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-------- 93 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-------- 93 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC--------
Confidence 3444455567899999999999999999999999999999999999998876543 689999998876532
Q ss_pred hhcCCCCccEEEEcCCCcccH--------HHHHHhccCCCCc
Q 023482 211 RRKSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIF 244 (281)
Q Consensus 211 ~~~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~ 244 (281)
+.||+|+++..+++.. ..+.++++++|.+
T Consensus 94 -----~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 94 -----GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred -----CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEE
Confidence 5699999987654321 2334778888875
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.40 E-value=2.9e-12 Score=108.44 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=76.5
Q ss_pred HHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHH
Q 023482 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFE 210 (281)
Q Consensus 132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~ 210 (281)
.+++.+...++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.++++....+ ++++..+|+...++
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--------- 91 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL--------- 91 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc---------
Confidence 44455555567799999999999999999999999999999999999988776443 57777888765442
Q ss_pred hhcCCCCccEEEEcCCCcccH-----H---HHHHhccCCCCc
Q 023482 211 RRKSSSGFAKVVANIPFNIST-----D---VIKQLLPMGDIF 244 (281)
Q Consensus 211 ~~~~~~~~d~Vi~n~P~~~~~-----~---~~~~ll~~~~~~ 244 (281)
.+.||+|+++.+++... . .+.+++++||.+
T Consensus 92 ----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 129 (195)
T TIGR00477 92 ----NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYN 129 (195)
T ss_pred ----cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEE
Confidence 25699999988775431 2 334677888874
No 35
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.40 E-value=2.6e-12 Score=104.18 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCccHHHHHHHH-c--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN-A--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~-~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
++.+|||+|||+|.++..+++ . +.+++|+|++++|++.|+++++.. .+++++++|+.+++-. -.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-----------~~ 71 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-----------LE 71 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-----------SS
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-----------cC
Confidence 578999999999999999994 3 679999999999999999987644 3899999999996510 01
Q ss_pred CCccEEEEcCCCcccHH------HHHHhccCCCCcceEEEe
Q 023482 216 SGFAKVVANIPFNISTD------VIKQLLPMGDIFSEVVLL 250 (281)
Q Consensus 216 ~~~d~Vi~n~P~~~~~~------~~~~ll~~~~~~~~~~~~ 250 (281)
..||+|+++.+++.... .+.+++++++.+-.....
T Consensus 72 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 72 EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 57999999977644332 234677777776444444
No 36
>PHA03411 putative methyltransferase; Provisional
Probab=99.39 E-value=2e-12 Score=113.49 Aligned_cols=93 Identities=15% Similarity=0.294 Sum_probs=75.9
Q ss_pred cCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCc
Q 023482 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196 (281)
Q Consensus 119 ~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~ 196 (281)
.|+ |++++.++..+.. ....+.+|||+|||+|.++..++.. +.+|+++|+++.+++.++++.. +++++++|+
T Consensus 45 ~G~-FfTP~~i~~~f~~--~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~---~v~~v~~D~ 118 (279)
T PHA03411 45 SGA-FFTPEGLAWDFTI--DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP---EAEWITSDV 118 (279)
T ss_pred cee-EcCCHHHHHHHHh--ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc---CCEEEECch
Confidence 466 9999999866542 3334579999999999999988775 4699999999999999998754 789999999
Q ss_pred cccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (281)
Q Consensus 197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~ 230 (281)
.++.. ...||+|++||||...
T Consensus 119 ~e~~~-------------~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 119 FEFES-------------NEKFDVVISNPPFGKI 139 (279)
T ss_pred hhhcc-------------cCCCcEEEEcCCcccc
Confidence 87642 2579999999999763
No 37
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=99.38 E-value=1.6e-12 Score=109.07 Aligned_cols=171 Identities=22% Similarity=0.391 Sum_probs=136.6
Q ss_pred hcCCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC-C
Q 023482 110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-D 187 (281)
Q Consensus 110 ~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~-~ 187 (281)
-|...+++.+.|+|.++-.+.+.+.+..+.-..+-|.|||.|.|.+|..+.+.+. .+..||+++..+.-.+...+.. +
T Consensus 19 lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~ 98 (326)
T KOG0821|consen 19 LYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPG 98 (326)
T ss_pred HHHHHHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCc
Confidence 3356788889999999999999999999887888999999999999999999864 8999999998888776655544 3
Q ss_pred CeEEEEcCccccccccchhhHHHhh-cCCCCccEEEEcCCCcccHHHHHHhccCC----CCc----ceEEEeehhhHHHH
Q 023482 188 QLKVLQEDFVKCHIRSHMLSLFERR-KSSSGFAKVVANIPFNISTDVIKQLLPMG----DIF----SEVVLLLQEETALR 258 (281)
Q Consensus 188 ~v~~~~gD~~~~~~~d~~~d~v~~~-~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~----~~~----~~~~~~~~~~~a~r 258 (281)
+..++++|+......+..-+-...- .+......||+|+||+..+|++-+++++- |.| ..+++.+|.|+|.|
T Consensus 99 ~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~EVAeR 178 (326)
T KOG0821|consen 99 KLRIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAER 178 (326)
T ss_pred ceEEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHHHHHHH
Confidence 8999999999877665433322211 12234577999999999999888777432 333 46788999999999
Q ss_pred hcCCCCCCCccchhhhhhhhccC
Q 023482 259 LVEPSLRTSEYRPINIFVNFYSG 281 (281)
Q Consensus 259 l~~~~pg~~~y~~~s~l~~~~~~ 281 (281)
+. +.-|..--.++|++-|+.|+
T Consensus 179 lC-aP~~~~qRsRlSvMSQy~~E 200 (326)
T KOG0821|consen 179 LC-APTGSKQRSRLSVMSQYLCE 200 (326)
T ss_pred hc-ccccccchhhHHHHHHHhcC
Confidence 99 77788888999999999875
No 38
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=7.8e-13 Score=116.77 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccc
Q 023482 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (281)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~ 204 (281)
-.+.+++.+....+.+|||+|||.|.+++.+++.. .+++-+|+|..+++.|++|+..++ +..+...|..+-
T Consensus 146 GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~----- 220 (300)
T COG2813 146 GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP----- 220 (300)
T ss_pred HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-----
Confidence 36678888887777799999999999999999984 599999999999999999998664 446777776552
Q ss_pred hhhHHHhhcCCCCccEEEEcCCCcccHHHHH
Q 023482 205 MLSLFERRKSSSGFAKVVANIPFNISTDVIK 235 (281)
Q Consensus 205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~ 235 (281)
..++||.||+||||+....+..
T Consensus 221 ---------v~~kfd~IisNPPfh~G~~v~~ 242 (300)
T COG2813 221 ---------VEGKFDLIISNPPFHAGKAVVH 242 (300)
T ss_pred ---------ccccccEEEeCCCccCCcchhH
Confidence 2248999999999987665554
No 39
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.36 E-value=1.7e-11 Score=95.11 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcccccc
Q 023482 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI 201 (281)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~ 201 (281)
.+.+...+++.+.+.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++.... .+++++.+|+.+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE 83 (124)
T ss_pred hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh
Confidence 4566777888888777889999999999999999986 469999999999999999887654 378999999875321
Q ss_pred ccchhhHHHhhcCCCCccEEEEcCCCcccHH---HHHHhccCCCCcc
Q 023482 202 RSHMLSLFERRKSSSGFAKVVANIPFNISTD---VIKQLLPMGDIFS 245 (281)
Q Consensus 202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~---~~~~ll~~~~~~~ 245 (281)
...+.||.|+...+...... .+.++++++|.+.
T Consensus 84 -----------~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li 119 (124)
T TIGR02469 84 -----------DSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIV 119 (124)
T ss_pred -----------hhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEE
Confidence 11257999998765444333 3347777777653
No 40
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.36 E-value=3.4e-12 Score=120.96 Aligned_cols=105 Identities=22% Similarity=0.246 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccc
Q 023482 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (281)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~ 204 (281)
..+.+.+++.+...++.+|||+|||+|.++..++..+.+|+|+|+|+.|++.|+++...++ +++++++|+.+.. .+.
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l-~~~ 361 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF-TDQ 361 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh-hhh
Confidence 3455666667777788899999999999999999988899999999999999999987553 8999999997632 000
Q ss_pred hhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhcc
Q 023482 205 MLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239 (281)
Q Consensus 205 ~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~ 239 (281)
. .....||+|+.||||....++++.+.+
T Consensus 362 ~-------~~~~~fD~Vi~dPPr~g~~~~~~~l~~ 389 (443)
T PRK13168 362 P-------WALGGFDKVLLDPPRAGAAEVMQALAK 389 (443)
T ss_pred h-------hhcCCCCEEEECcCCcChHHHHHHHHh
Confidence 0 112569999999999877777776664
No 41
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.36 E-value=9.3e-12 Score=105.45 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccc
Q 023482 127 SEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR 202 (281)
Q Consensus 127 ~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~ 202 (281)
..+.+.+++.+.. .++.+|||+|||+|.+++.++.. ..+|+++|+++.+++.+++|+..++ +++++++|+.+.-.
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~- 116 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA- 116 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh-
Confidence 4444555555532 45679999999999999976555 4699999999999999999987654 79999999876310
Q ss_pred cchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482 203 SHMLSLFERRKSSSGFAKVVANIPFNIS 230 (281)
Q Consensus 203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~~ 230 (281)
.....||+||.||||...
T Consensus 117 ----------~~~~~fDlV~~DPPy~~g 134 (199)
T PRK10909 117 ----------QPGTPHNVVFVDPPFRKG 134 (199)
T ss_pred ----------hcCCCceEEEECCCCCCC
Confidence 112469999999998543
No 42
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=3.9e-12 Score=113.32 Aligned_cols=73 Identities=26% Similarity=0.462 Sum_probs=61.6
Q ss_pred EEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482 144 IVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d 219 (281)
+|||+|||+|.+++.++... ++|+|+|+|+.+++.|++|...++ ++.++.+|..+- -.+.||
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~--------------~~~~fD 178 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP--------------LRGKFD 178 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc--------------cCCcee
Confidence 79999999999999999984 499999999999999999998764 667777776552 225899
Q ss_pred EEEEcCCCccc
Q 023482 220 KVVANIPFNIS 230 (281)
Q Consensus 220 ~Vi~n~P~~~~ 230 (281)
+||+||||-..
T Consensus 179 lIVsNPPYip~ 189 (280)
T COG2890 179 LIVSNPPYIPA 189 (280)
T ss_pred EEEeCCCCCCC
Confidence 99999999443
No 43
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.35 E-value=4.2e-12 Score=115.24 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=79.5
Q ss_pred ccCCHHHHHHHH----HHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCc
Q 023482 123 YMLNSEINDQLA----AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF 196 (281)
Q Consensus 123 ~~~~~~~~~~l~----~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~ 196 (281)
|..++...+.++ +++...++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|+++...++ +++++++|+
T Consensus 151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~ 230 (315)
T PRK03522 151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS 230 (315)
T ss_pred eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH
Confidence 445555444444 44443456899999999999999999998899999999999999999987654 799999999
Q ss_pred cccccccchhhHHHhhcCCCCccEEEEcCCCcccH-HHHHHhc
Q 023482 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLL 238 (281)
Q Consensus 197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-~~~~~ll 238 (281)
.++.. ...+.||+|+.|||+.... .++..+.
T Consensus 231 ~~~~~-----------~~~~~~D~Vv~dPPr~G~~~~~~~~l~ 262 (315)
T PRK03522 231 TQFAT-----------AQGEVPDLVLVNPPRRGIGKELCDYLS 262 (315)
T ss_pred HHHHH-----------hcCCCCeEEEECCCCCCccHHHHHHHH
Confidence 87542 1124699999999987544 4444443
No 44
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=6.7e-12 Score=110.51 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=81.4
Q ss_pred HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhh
Q 023482 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS 207 (281)
Q Consensus 131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d 207 (281)
..+++.+. ..+.+|||+|||+|.++..+++.+.+|+|+|++++|++.|+++.... ++++++++|+.+++.
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~------ 107 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ------ 107 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh------
Confidence 34555555 35679999999999999999999999999999999999999988654 378999999988642
Q ss_pred HHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482 208 LFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV 247 (281)
Q Consensus 208 ~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~ 247 (281)
...+.||+|+++..+++.. ..+.++++++|.+...
T Consensus 108 -----~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 108 -----HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred -----hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 1236799999876654321 3445888999987544
No 45
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.34 E-value=9e-12 Score=104.61 Aligned_cols=92 Identities=21% Similarity=0.246 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
++.+|||+|||+|..+..++.. +++|+++|+++.+++.|+++.+..+ +++++++|+.+++. .+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-------------~~ 111 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-------------EE 111 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-------------CC
Confidence 4789999999999999999874 6799999999999999999887654 69999999988653 36
Q ss_pred CccEEEEcCC--CcccHHHHHHhccCCCCcc
Q 023482 217 GFAKVVANIP--FNISTDVIKQLLPMGDIFS 245 (281)
Q Consensus 217 ~~d~Vi~n~P--~~~~~~~~~~ll~~~~~~~ 245 (281)
+||+|+++.- +......+.++++++|.+.
T Consensus 112 ~fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv 142 (187)
T PRK00107 112 KFDVVTSRAVASLSDLVELCLPLLKPGGRFL 142 (187)
T ss_pred CccEEEEccccCHHHHHHHHHHhcCCCeEEE
Confidence 7999999742 1122233457888888764
No 46
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.34 E-value=2.1e-11 Score=102.31 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=85.5
Q ss_pred cccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCcc
Q 023482 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFV 197 (281)
Q Consensus 122 ~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~ 197 (281)
..++.+.+...+++.+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++.... .+++++++|+.
T Consensus 12 ~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~ 91 (187)
T PRK08287 12 VPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP 91 (187)
T ss_pred CCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch
Confidence 35677778888888888888899999999999999999886 469999999999999999987654 37999999874
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCcccHHH---HHHhccCCCCcc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV---IKQLLPMGDIFS 245 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~---~~~ll~~~~~~~ 245 (281)
. ++ .+.||+|+++........+ ..++++++|.+.
T Consensus 92 ~-~~-------------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv 128 (187)
T PRK08287 92 I-EL-------------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLV 128 (187)
T ss_pred h-hc-------------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEE
Confidence 2 21 2568999987544333333 347778888763
No 47
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.34 E-value=4.8e-12 Score=111.42 Aligned_cols=98 Identities=24% Similarity=0.300 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (281)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d 207 (281)
...+++.+...++.+|||||||+|.++..++.. +.+|+|+|+|+.|++.|+++ +++++++|+.+++.
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~------ 86 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWKP------ 86 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCCC------
Confidence 456677777778899999999999999999987 67999999999999999763 68899999987631
Q ss_pred HHHhhcCCCCccEEEEcCCCcccH---H---HHHHhccCCCCcc
Q 023482 208 LFERRKSSSGFAKVVANIPFNIST---D---VIKQLLPMGDIFS 245 (281)
Q Consensus 208 ~v~~~~~~~~~d~Vi~n~P~~~~~---~---~~~~ll~~~~~~~ 245 (281)
.+.||+|+++..+++.. . .+.+.+++||.+.
T Consensus 87 -------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~ 123 (255)
T PRK14103 87 -------KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIA 123 (255)
T ss_pred -------CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEE
Confidence 25799999998776543 2 2346688888764
No 48
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=1.3e-11 Score=108.67 Aligned_cols=102 Identities=21% Similarity=0.299 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccccc
Q 023482 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS 203 (281)
Q Consensus 128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d 203 (281)
...+.+++.+.+++|.+|||||||.|.+++.+|+. +.+|+|+++|+++.+.+++++...+ ++++...|..++.
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--- 135 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence 34777889999999999999999999999999998 8999999999999999999887653 8999999998875
Q ss_pred chhhHHHhhcCCCCccEEEEcCCCc-----ccH---HHHHHhccCCCCc
Q 023482 204 HMLSLFERRKSSSGFAKVVANIPFN-----IST---DVIKQLLPMGDIF 244 (281)
Q Consensus 204 ~~~d~v~~~~~~~~~d~Vi~n~P~~-----~~~---~~~~~ll~~~~~~ 244 (281)
+.||.|+|--.|+ ... ..+.++++++|.+
T Consensus 136 ------------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 136 ------------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred ------------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence 4499999854332 122 2335777777765
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.33 E-value=8.4e-12 Score=104.37 Aligned_cols=91 Identities=20% Similarity=0.321 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.++++.+..+ +++++++|+.+++. .+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-------------~~ 108 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-------------EE 108 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-------------cC
Confidence 4789999999999999998865 4689999999999999998876553 79999999988631 26
Q ss_pred CccEEEEcCCCcccH---HHHHHhccCCCCcc
Q 023482 217 GFAKVVANIPFNIST---DVIKQLLPMGDIFS 245 (281)
Q Consensus 217 ~~d~Vi~n~P~~~~~---~~~~~ll~~~~~~~ 245 (281)
.||+|+++. +.... ..+.++++++|.+.
T Consensus 109 ~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lv 139 (181)
T TIGR00138 109 QFDVITSRA-LASLNVLLELTLNLLKVGGYFL 139 (181)
T ss_pred CccEEEehh-hhCHHHHHHHHHHhcCCCCEEE
Confidence 799999986 33323 34457788888753
No 50
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.33 E-value=8e-12 Score=115.79 Aligned_cols=78 Identities=18% Similarity=0.300 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++...++ +++++++|+.+..++ ..+.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~-----------~~~~ 319 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP-----------SEGK 319 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc-----------cCCC
Confidence 5569999999999999999875 5799999999999999999987655 899999998764321 1257
Q ss_pred ccEEEEcCCCcc
Q 023482 218 FAKVVANIPFNI 229 (281)
Q Consensus 218 ~d~Vi~n~P~~~ 229 (281)
||+|++||||..
T Consensus 320 FDLIVSNPPYI~ 331 (423)
T PRK14966 320 WDIIVSNPPYIE 331 (423)
T ss_pred ccEEEECCCCCC
Confidence 999999999953
No 51
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.33 E-value=1e-11 Score=111.02 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=64.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcC
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++...++ +++++++|+.+. ..
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-------------~~ 186 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-------------LP 186 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-------------cC
Confidence 34579999999999999999986 5699999999999999999987553 799999998652 11
Q ss_pred CCCccEEEEcCCCcc
Q 023482 215 SSGFAKVVANIPFNI 229 (281)
Q Consensus 215 ~~~~d~Vi~n~P~~~ 229 (281)
...||+|++||||..
T Consensus 187 ~~~fD~Iv~NPPy~~ 201 (284)
T TIGR03533 187 GRKYDLIVSNPPYVD 201 (284)
T ss_pred CCCccEEEECCCCCC
Confidence 247999999999953
No 52
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.32 E-value=1.8e-11 Score=111.94 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchh
Q 023482 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHML 206 (281)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~ 206 (281)
...+++.+......+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++++.++ ..+++.+|+.+.
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~------- 257 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD------- 257 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-------
Confidence 456666666555568999999999999999987 3599999999999999999987665 567788887542
Q ss_pred hHHHhhcCCCCccEEEEcCCCccc--------HHHH---HHhccCCCCcc
Q 023482 207 SLFERRKSSSGFAKVVANIPFNIS--------TDVI---KQLLPMGDIFS 245 (281)
Q Consensus 207 d~v~~~~~~~~~d~Vi~n~P~~~~--------~~~~---~~ll~~~~~~~ 245 (281)
..+.||.|++||||+.. ..++ .+.++++|.+.
T Consensus 258 -------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~ 300 (342)
T PRK09489 258 -------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELR 300 (342)
T ss_pred -------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEE
Confidence 12679999999999752 1222 35677777663
No 53
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.31 E-value=1.6e-11 Score=111.31 Aligned_cols=96 Identities=20% Similarity=0.137 Sum_probs=75.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++.+|||||||+|.++..+++.+++|+|||+++++++.|+.+.... .+++++++|+.++++. .+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~------------~~ 197 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE------------GR 197 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc------------cC
Confidence 35679999999999999999988999999999999999999876532 3899999999988743 26
Q ss_pred CccEEEEcCCCcc------cHHHHHHhccCCCCcceE
Q 023482 217 GFAKVVANIPFNI------STDVIKQLLPMGDIFSEV 247 (281)
Q Consensus 217 ~~d~Vi~n~P~~~------~~~~~~~ll~~~~~~~~~ 247 (281)
.||+|++.-.+++ .-..+.+++++||.+-..
T Consensus 198 ~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 198 KFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred CCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEE
Confidence 7899988543321 224446888898877444
No 54
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.31 E-value=1.6e-11 Score=108.11 Aligned_cols=101 Identities=19% Similarity=0.342 Sum_probs=80.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchh
Q 023482 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (281)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~ 206 (281)
....++..+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.|++.|+++.. +++++.+|+.++..
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~---~~~~~~~d~~~~~~----- 90 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP---DCQFVEADIASWQP----- 90 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC---CCeEEECchhccCC-----
Confidence 4556777777778899999999999999999986 5799999999999999998764 78999999976532
Q ss_pred hHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcc
Q 023482 207 SLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFS 245 (281)
Q Consensus 207 d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~ 245 (281)
...||+|+++..+++.. ..+.+++++||.+.
T Consensus 91 --------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~ 127 (258)
T PRK01683 91 --------PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLA 127 (258)
T ss_pred --------CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEE
Confidence 25799999998776543 22346778888653
No 55
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.30 E-value=2.8e-11 Score=107.46 Aligned_cols=103 Identities=25% Similarity=0.324 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccccc
Q 023482 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS 203 (281)
Q Consensus 128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d 203 (281)
...+.+++.+++++|.+|||||||.|.++..+++. |++|+||.+|++..+.+++++.+.+ ++++..+|..+++
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 34677888889999999999999999999999998 9999999999999999999988664 7999999998765
Q ss_pred chhhHHHhhcCCCCccEEEEcCCCc-----cc---HHHHHHhccCCCCcc
Q 023482 204 HMLSLFERRKSSSGFAKVVANIPFN-----IS---TDVIKQLLPMGDIFS 245 (281)
Q Consensus 204 ~~~d~v~~~~~~~~~d~Vi~n~P~~-----~~---~~~~~~ll~~~~~~~ 245 (281)
+.||.|++--.+. .. -..+.++|+++|.+-
T Consensus 126 ------------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~ 163 (273)
T PF02353_consen 126 ------------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLV 163 (273)
T ss_dssp -------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEE
T ss_pred ------------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEE
Confidence 4799999843222 11 244568899998874
No 56
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.30 E-value=3e-11 Score=109.50 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=86.3
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~ 197 (281)
+..++.+...+++.+.+.++++|||||||+|+++..+++.. .+|+++|+++++++.|++++...+ ++.++++|+.
T Consensus 62 ~~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~ 141 (322)
T PRK13943 62 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGY 141 (322)
T ss_pred cCCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChh
Confidence 55678888999999988889999999999999999999862 379999999999999999887553 8999999987
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIF 244 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~ 244 (281)
+... ....||+|+.+.........+.+.++++|.+
T Consensus 142 ~~~~------------~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~L 176 (322)
T PRK13943 142 YGVP------------EFAPYDVIFVTVGVDEVPETWFTQLKEGGRV 176 (322)
T ss_pred hccc------------ccCCccEEEECCchHHhHHHHHHhcCCCCEE
Confidence 6542 2256899998644433344455566666654
No 57
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.30 E-value=5.9e-12 Score=105.40 Aligned_cols=99 Identities=18% Similarity=0.291 Sum_probs=81.3
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (281)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d 207 (281)
...++..+.+....+|.|+|||+|.+|..|+++ ++.|+|||-|++|++.|+.+.. +++|..+|+.++.
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp---~~~f~~aDl~~w~------- 88 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP---DATFEEADLRTWK------- 88 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC---CCceecccHhhcC-------
Confidence 345667777778889999999999999999998 7899999999999999988876 8899999999873
Q ss_pred HHHhhcCCCCccEEEEcCCCcccHH---HHH---HhccCCCCc
Q 023482 208 LFERRKSSSGFAKVVANIPFNISTD---VIK---QLLPMGDIF 244 (281)
Q Consensus 208 ~v~~~~~~~~~d~Vi~n~P~~~~~~---~~~---~ll~~~~~~ 244 (281)
.....|++++|--++|.++ ++. ..+.+||.+
T Consensus 89 ------p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~L 125 (257)
T COG4106 89 ------PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVL 125 (257)
T ss_pred ------CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceE
Confidence 3467899999988887663 222 344677765
No 58
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.29 E-value=6.2e-11 Score=97.89 Aligned_cols=117 Identities=22% Similarity=0.266 Sum_probs=90.9
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK 198 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~ 198 (281)
.++.+++....+..|.+.++++++|||||||.++..++.. ..+|++||.++++++..++|..+.+ |++++.||+.+
T Consensus 16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~ 95 (187)
T COG2242 16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPE 95 (187)
T ss_pred CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchH
Confidence 4788999999999999999999999999999999999954 5699999999999999999998775 99999999987
Q ss_pred cccccchhhHHHhhcCCCCccEEEEcCCCcccHHHH---HHhccCCCCcceEEEeeh
Q 023482 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIFSEVVLLLQ 252 (281)
Q Consensus 199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~---~~ll~~~~~~~~~~~~~~ 252 (281)
.- .....+|.||..=- .....++ ...+++++.+-.....++
T Consensus 96 ~L------------~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 96 AL------------PDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred hh------------cCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 52 12236899997543 3333333 344556666644443333
No 59
>PRK14968 putative methyltransferase; Provisional
Probab=99.29 E-value=4.3e-11 Score=99.91 Aligned_cols=90 Identities=23% Similarity=0.336 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--C--eEEEEcCccccccc
Q 023482 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHIR 202 (281)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~--v~~~~gD~~~~~~~ 202 (281)
......+++.+...++++|||+|||+|.++..++..+.+++|+|+++++++.+++++...+ + +.++++|+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-- 86 (188)
T PRK14968 9 AEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-- 86 (188)
T ss_pred chhHHHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc--
Confidence 3334555556655678899999999999999999988899999999999999998876443 2 889999986631
Q ss_pred cchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 203 SHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
....||+|++|+||..
T Consensus 87 -----------~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 87 -----------RGDKFDVILFNPPYLP 102 (188)
T ss_pred -----------cccCceEEEECCCcCC
Confidence 1247999999999865
No 60
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.29 E-value=6.7e-11 Score=101.44 Aligned_cols=113 Identities=16% Similarity=0.247 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--C------CEEEEEeCCHHHHHHHHHHhcCC-----CCeEEEE
Q 023482 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G------ATVLAIEKDQHMVGLVRERFASI-----DQLKVLQ 193 (281)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~------~~v~gvD~s~~~l~~a~~~~~~~-----~~v~~~~ 193 (281)
+-|-+..+..+.+..+.++||++||||.++..+.+. . .+|+.+|+|++|++.++++..+. +.+.|++
T Consensus 86 RlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~ 165 (296)
T KOG1540|consen 86 RLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE 165 (296)
T ss_pred HHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence 446677888899989999999999999999999875 2 68999999999999999887443 2599999
Q ss_pred cCccccccccchhhHHHhhcCCCCccEEEE--cCCC-cccHHHHHHhccCCCCcceEE
Q 023482 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVA--NIPF-NISTDVIKQLLPMGDIFSEVV 248 (281)
Q Consensus 194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~--n~P~-~~~~~~~~~ll~~~~~~~~~~ 248 (281)
+|++++||+|+++|.. ..-++ |.+. ...-...-+.|++|++|.+.-
T Consensus 166 ~dAE~LpFdd~s~D~y---------TiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAY---------TIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCcccCCCCCCcceeE---------EEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999988655543 11111 3221 111123348889999886444
No 61
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.29 E-value=1.3e-11 Score=90.99 Aligned_cols=86 Identities=26% Similarity=0.369 Sum_probs=66.9
Q ss_pred EEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEc
Q 023482 146 LEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (281)
Q Consensus 146 LDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n 224 (281)
||+|||+|..+..+++. +.+|+++|+++++++.++++... .++.+.++|+.++|+++ ++||.|+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~~------------~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLPFPD------------NSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSSS-T------------T-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCcccc------------ccccccccc
Confidence 89999999999999999 88999999999999999998864 36779999999999765 788999997
Q ss_pred CCCcccH------HHHHHhccCCCCc
Q 023482 225 IPFNIST------DVIKQLLPMGDIF 244 (281)
Q Consensus 225 ~P~~~~~------~~~~~ll~~~~~~ 244 (281)
--+++.. ..+.++++++|.+
T Consensus 68 ~~~~~~~~~~~~l~e~~rvLk~gG~l 93 (95)
T PF08241_consen 68 SVLHHLEDPEAALREIYRVLKPGGRL 93 (95)
T ss_dssp SHGGGSSHHHHHHHHHHHHEEEEEEE
T ss_pred cceeeccCHHHHHHHHHHHcCcCeEE
Confidence 6665442 2334666766643
No 62
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.28 E-value=7e-11 Score=103.25 Aligned_cols=89 Identities=21% Similarity=0.368 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccc
Q 023482 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR 202 (281)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~ 202 (281)
..++..+++.+. ..+.+|||+|||+|.++..++.. ..+++|+|+++.+++.|+.+....+ +++++++|+.+. +
T Consensus 74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~- 150 (251)
T TIGR03534 74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-L- 150 (251)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc-C-
Confidence 345555666554 24468999999999999999986 5699999999999999999887543 799999998762 2
Q ss_pred cchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 203 SHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
..+.||+|++||||..
T Consensus 151 -----------~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 151 -----------PGGKFDLIVSNPPYIP 166 (251)
T ss_pred -----------cCCceeEEEECCCCCc
Confidence 2367999999999974
No 63
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.27 E-value=3.4e-11 Score=107.70 Aligned_cols=90 Identities=18% Similarity=0.315 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCC-CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccc
Q 023482 128 EINDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHI 201 (281)
Q Consensus 128 ~~~~~l~~~l~~~~-~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~ 201 (281)
.+++.++..+.... ..+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++...++ +++++++|+.+. +
T Consensus 100 ~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~ 178 (284)
T TIGR00536 100 ELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-L 178 (284)
T ss_pred HHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-C
Confidence 34444444442223 368999999999999999986 4699999999999999999987543 499999998762 1
Q ss_pred ccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482 202 RSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (281)
Q Consensus 202 ~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~ 230 (281)
....||+|++||||...
T Consensus 179 ------------~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 179 ------------AGQKIDIIVSNPPYIDE 195 (284)
T ss_pred ------------cCCCccEEEECCCCCCc
Confidence 12379999999999543
No 64
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.27 E-value=7.5e-11 Score=99.97 Aligned_cols=112 Identities=20% Similarity=0.309 Sum_probs=85.8
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF 196 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~ 196 (281)
.++..++....+..+.+.++.+|||+|||+|.++..++.. +.+|+++|+++.+++.|+++...+ ++++++++|+
T Consensus 22 ~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~ 101 (198)
T PRK00377 22 PMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEA 101 (198)
T ss_pred CCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEech
Confidence 4666777777788889999999999999999999998864 359999999999999999887654 3899999998
Q ss_pred cccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHH---HHhccCCCCcc
Q 023482 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI---KQLLPMGDIFS 245 (281)
Q Consensus 197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~---~~ll~~~~~~~ 245 (281)
.+... ...+.||.|+++........++ .+++++++.+.
T Consensus 102 ~~~l~-----------~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv 142 (198)
T PRK00377 102 PEILF-----------TINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIV 142 (198)
T ss_pred hhhHh-----------hcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEE
Confidence 76421 1125799999965433333333 46678887763
No 65
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.26 E-value=3.4e-11 Score=108.80 Aligned_cols=74 Identities=15% Similarity=0.287 Sum_probs=63.0
Q ss_pred CEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++...++ +++++++|+.+. ...+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-------------l~~~~ 201 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-------------LPGRR 201 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-------------CCCCC
Confidence 68999999999999999987 5699999999999999999987553 699999998652 11257
Q ss_pred ccEEEEcCCCcc
Q 023482 218 FAKVVANIPFNI 229 (281)
Q Consensus 218 ~d~Vi~n~P~~~ 229 (281)
||+|++||||..
T Consensus 202 fDlIvsNPPyi~ 213 (307)
T PRK11805 202 YDLIVSNPPYVD 213 (307)
T ss_pred ccEEEECCCCCC
Confidence 999999999953
No 66
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.25 E-value=4.9e-11 Score=104.82 Aligned_cols=90 Identities=22% Similarity=0.241 Sum_probs=67.3
Q ss_pred HHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccch
Q 023482 129 INDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM 205 (281)
Q Consensus 129 ~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~ 205 (281)
+++.++..+.. ..+.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++|...++ ++++++|+.+....
T Consensus 73 Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-~~~~~~D~~~~l~~--- 148 (251)
T TIGR03704 73 LVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-GTVHEGDLYDALPT--- 148 (251)
T ss_pred HHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CEEEEeechhhcch---
Confidence 34444444432 23458999999999999999876 4699999999999999999987643 68999998653210
Q ss_pred hhHHHhhcCCCCccEEEEcCCCcc
Q 023482 206 LSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 206 ~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
...+.||+|++||||..
T Consensus 149 -------~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 149 -------ALRGRVDILAANAPYVP 165 (251)
T ss_pred -------hcCCCEeEEEECCCCCC
Confidence 11257999999999963
No 67
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.25 E-value=2.4e-11 Score=91.65 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=61.6
Q ss_pred EEEEcCCccHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482 145 VLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 145 VLDiGcG~G~~t~~la~~~-----~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
|||+|||+|..+..++... .+++|+|+|++|++.++++....+ +++++++|+.++++. .+.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~------------~~~~ 68 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS------------DGKF 68 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH------------SSSE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc------------CCCe
Confidence 7999999999999999873 799999999999999999986443 899999999998743 3689
Q ss_pred cEEEE-cC-CCcccHHHHHHh
Q 023482 219 AKVVA-NI-PFNISTDVIKQL 237 (281)
Q Consensus 219 d~Vi~-n~-P~~~~~~~~~~l 237 (281)
|+|++ .. ..+...+.+..+
T Consensus 69 D~v~~~~~~~~~~~~~~~~~l 89 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELEAL 89 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHHHH
T ss_pred eEEEEcCCccCCCCHHHHHHH
Confidence 99999 34 223444444433
No 68
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.24 E-value=7.4e-11 Score=112.84 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=88.1
Q ss_pred cCccccCCHH--HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEc
Q 023482 119 LGQHYMLNSE--INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID-QLKVLQE 194 (281)
Q Consensus 119 ~g~~~~~~~~--~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~g 194 (281)
+|..|...+. ..+.+++.+.+.++.+|||||||+|..+..++.. +.+|+|+|+|+.+++.|+++..... +++++++
T Consensus 242 ~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~ 321 (475)
T PLN02336 242 FGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVA 321 (475)
T ss_pred hCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEc
Confidence 4544544443 3566777777778889999999999999999886 7799999999999999998875443 8999999
Q ss_pred CccccccccchhhHHHhhcCCCCccEEEEcCCCccc---H---HHHHHhccCCCCcceE
Q 023482 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS---T---DVIKQLLPMGDIFSEV 247 (281)
Q Consensus 195 D~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~---~---~~~~~ll~~~~~~~~~ 247 (281)
|+.+.++++ +.||+|++...+.+. . ..+.+++++||.+...
T Consensus 322 d~~~~~~~~------------~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 322 DCTKKTYPD------------NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred CcccCCCCC------------CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 998877542 578999986443222 1 3345788888876443
No 69
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=5e-11 Score=105.87 Aligned_cols=123 Identities=24% Similarity=0.246 Sum_probs=85.1
Q ss_pred CCCCcccCccc-cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC-C-
Q 023482 113 RFPRKSLGQHY-MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q- 188 (281)
Q Consensus 113 ~~~~~~~g~~~-~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~-~- 188 (281)
+++...||.-. .+...-++.+-+... ++.+|||+|||+|.+++++++.|+ +|+|+|+||.+++.|+.|...++ .
T Consensus 135 lDPGlAFGTG~HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~ 212 (300)
T COG2264 135 LDPGLAFGTGTHPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL 212 (300)
T ss_pred EccccccCCCCChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch
Confidence 45566677533 333333444444444 788999999999999999999987 69999999999999999998764 2
Q ss_pred -eEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC---CCcccHHHHHHhccCCCCcceEEEe
Q 023482 189 -LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI---PFNISTDVIKQLLPMGDIFSEVVLL 250 (281)
Q Consensus 189 -v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~---P~~~~~~~~~~ll~~~~~~~~~~~~ 250 (281)
++....+..+. ...+.||+||+|. |.....+.+..++++++.+-..-.+
T Consensus 213 ~~~~~~~~~~~~-------------~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 213 LVQAKGFLLLEV-------------PENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred hhhcccccchhh-------------cccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 22333333332 2336899999996 3334446667788888877555543
No 70
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.24 E-value=5.8e-11 Score=101.04 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCc-cccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF-VKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~-~~~~~~d~~~d~v~~~~~~ 215 (281)
++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++.... .+++++++|+ ..++.. ...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~----------~~~ 109 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM----------FPD 109 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH----------cCc
Confidence 5679999999999999999886 468999999999999999887654 4899999999 555410 123
Q ss_pred CCccEEEEcCCCcc-----------cH---HHHHHhccCCCCcc
Q 023482 216 SGFAKVVANIPFNI-----------ST---DVIKQLLPMGDIFS 245 (281)
Q Consensus 216 ~~~d~Vi~n~P~~~-----------~~---~~~~~ll~~~~~~~ 245 (281)
+.||.|+++.|..+ .. ..+.++++++|.+.
T Consensus 110 ~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~ 153 (202)
T PRK00121 110 GSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIH 153 (202)
T ss_pred cccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEE
Confidence 67899999865322 12 23357888888763
No 71
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.24 E-value=5.8e-11 Score=104.09 Aligned_cols=94 Identities=22% Similarity=0.296 Sum_probs=73.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhh
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR 212 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~ 212 (281)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|++++... .+++++++|+.++++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----------- 123 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----------- 123 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----------
Confidence 36779999999999999888872 579999999999999999998754 279999999988764
Q ss_pred cCCCCccEEEEcCCCcccH--------HHHHHhccCCCCcceE
Q 023482 213 KSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIFSEV 247 (281)
Q Consensus 213 ~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~~~~ 247 (281)
+.+|+|+++..++... ..+.+.+++||.+-..
T Consensus 124 ---~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 124 ---ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred ---CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3478899886654331 2334677888876443
No 72
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.23 E-value=4.5e-11 Score=110.90 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=81.3
Q ss_pred ccCCHHHHHHHHHH----hcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCc
Q 023482 123 YMLNSEINDQLAAA----AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF 196 (281)
Q Consensus 123 ~~~~~~~~~~l~~~----l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~ 196 (281)
|.++....+.+++. +...++.+|||+|||+|.+++.++..+.+|+|||+++.+++.|++|.+.++ +++++++|+
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~ 290 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS 290 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence 56666666666543 333356799999999999999999888899999999999999999987654 899999999
Q ss_pred cccccccchhhHHHhhcCCCCccEEEEcCCCcc-cHHHHHHhcc
Q 023482 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLLP 239 (281)
Q Consensus 197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-~~~~~~~ll~ 239 (281)
.+... .....||+||.|||+.. ...++..+..
T Consensus 291 ~~~~~-----------~~~~~~D~vi~DPPr~G~~~~~l~~l~~ 323 (374)
T TIGR02085 291 AKFAT-----------AQMSAPELVLVNPPRRGIGKELCDYLSQ 323 (374)
T ss_pred HHHHH-----------hcCCCCCEEEECCCCCCCcHHHHHHHHh
Confidence 76531 11145899999999974 3455555543
No 73
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.6e-11 Score=96.54 Aligned_cols=101 Identities=23% Similarity=0.357 Sum_probs=84.4
Q ss_pred CCcccCccccCCHHHHHHHHHHhcC----CCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCCC-C
Q 023482 115 PRKSLGQHYMLNSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID-Q 188 (281)
Q Consensus 115 ~~~~~g~~~~~~~~~~~~l~~~l~~----~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~-~ 188 (281)
++-.+.| |.++++++.-|+..+.. -.|+.++|+|||+|.+....+..+ ..|+|+|+++++++.+..|.+... +
T Consensus 19 pk~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq 97 (185)
T KOG3420|consen 19 PKLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ 97 (185)
T ss_pred cchhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh
Confidence 3444566 99999999999888753 367899999999999997776664 489999999999999999988776 8
Q ss_pred eEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (281)
Q Consensus 189 v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~ 228 (281)
+.++++|+.++-+ ..+.||.++.||||.
T Consensus 98 idlLqcdildle~------------~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 98 IDLLQCDILDLEL------------KGGIFDTAVINPPFG 125 (185)
T ss_pred hheeeeeccchhc------------cCCeEeeEEecCCCC
Confidence 8999999988753 347899999999995
No 74
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.23 E-value=4.7e-11 Score=97.50 Aligned_cols=156 Identities=19% Similarity=0.251 Sum_probs=113.4
Q ss_pred cHHHHHHHHHhcCCCCCcccCccccCCHHHHHHHHHHhc---C-CCCCEEEEEcCCccHHHHHHHHcCC--EEEEEeCCH
Q 023482 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAA---V-QEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQ 173 (281)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~---~-~~~~~VLDiGcG~G~~t~~la~~~~--~v~gvD~s~ 173 (281)
.|...+.-+++++.....|||.. ....++.++..... + ...++|||+|||.|.+...|++.+. +++|||.++
T Consensus 24 ~Y~~El~Nfr~hgd~GEvWFg~~--ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~ 101 (227)
T KOG1271|consen 24 AYELELTNFREHGDEGEVWFGED--AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSE 101 (227)
T ss_pred HHHHHHhhcccCCCccceecCCc--HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCH
Confidence 45566666777788888899852 33456666666655 2 3345999999999999999999854 699999999
Q ss_pred HHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCC-----cccHHHHHHhccCCCCcc
Q 023482 174 HMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF-----NISTDVIKQLLPMGDIFS 245 (281)
Q Consensus 174 ~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~-----~~~~~~~~~ll~~~~~~~ 245 (281)
.+++.|+...++.+ .|+|.+.|+.+-++....||+| ...+.+|+|=..|-- ..-.+.+.+++.+++.|-
T Consensus 102 ~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlv---lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv 178 (227)
T KOG1271|consen 102 KAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLV---LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV 178 (227)
T ss_pred HHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEE---eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEE
Confidence 99999887766553 4999999999987777778887 777888887665322 223367789999988773
Q ss_pred eE-EEeehhhHHHHhc
Q 023482 246 EV-VLLLQEETALRLV 260 (281)
Q Consensus 246 ~~-~~~~~~~~a~rl~ 260 (281)
.. -.+.+.|+..+..
T Consensus 179 ItSCN~T~dELv~~f~ 194 (227)
T KOG1271|consen 179 ITSCNFTKDELVEEFE 194 (227)
T ss_pred EEecCccHHHHHHHHh
Confidence 21 2244556655544
No 75
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.23 E-value=2.3e-11 Score=104.73 Aligned_cols=114 Identities=24% Similarity=0.295 Sum_probs=81.4
Q ss_pred CCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--------CeEEEEcCccccccccchhhHHHhhc
Q 023482 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--------QLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--------~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
|.+|||+|||+|.++..||+.|++|+|||+++.|++.|+++....+ ++++.+.|+++..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------------- 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------------- 156 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-------------
Confidence 4789999999999999999999999999999999999999844322 3667777777653
Q ss_pred CCCCccEEEEcCCCccc---HHHH---HHhccCCCCc----------ceEEEeehhhHHHHhcCCCCCCCccchh
Q 023482 214 SSSGFAKVVANIPFNIS---TDVI---KQLLPMGDIF----------SEVVLLLQEETALRLVEPSLRTSEYRPI 272 (281)
Q Consensus 214 ~~~~~d~Vi~n~P~~~~---~~~~---~~ll~~~~~~----------~~~~~~~~~~~a~rl~~~~pg~~~y~~~ 272 (281)
+.||+|++.--+... ..++ ..+++++|.+ .....++-.|...+++ ++|+..|..+
T Consensus 157 --~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~iv--p~Gth~~ekf 227 (282)
T KOG1270|consen 157 --GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIV--PKGTHTWEKF 227 (282)
T ss_pred --cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhc--CCCCcCHHHc
Confidence 569999986443222 2222 3555666544 2222355567888876 6777666543
No 76
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.23 E-value=8.1e-11 Score=104.63 Aligned_cols=91 Identities=13% Similarity=0.258 Sum_probs=71.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcC
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
..+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++. ++++++++|+.++|+.+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp~~~----------- 149 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLPFAD----------- 149 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCCCcC-----------
Confidence 34578999999999999999875 237999999999999998765 37899999999998754
Q ss_pred CCCccEEEEcCCCcccHHHHHHhccCCCCcce
Q 023482 215 SSGFAKVVANIPFNISTDVIKQLLPMGDIFSE 246 (281)
Q Consensus 215 ~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~ 246 (281)
+.||+|++..... ....+.++++++|.+..
T Consensus 150 -~sfD~I~~~~~~~-~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 150 -QSLDAIIRIYAPC-KAEELARVVKPGGIVIT 179 (272)
T ss_pred -CceeEEEEecCCC-CHHHHHhhccCCCEEEE
Confidence 5678888764322 23556788888887743
No 77
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.22 E-value=9.3e-11 Score=105.05 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d 219 (281)
++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.++++....+ ++++..+|+...++ .+.||
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-------------~~~fD 186 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-------------QEEYD 186 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-------------cCCcc
Confidence 45699999999999999999999999999999999999998876554 78888888876543 26799
Q ss_pred EEEEcCCCccc-----H---HHHHHhccCCCCc
Q 023482 220 KVVANIPFNIS-----T---DVIKQLLPMGDIF 244 (281)
Q Consensus 220 ~Vi~n~P~~~~-----~---~~~~~ll~~~~~~ 244 (281)
+|+++..++.. . ..+.++++++|.+
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEE
Confidence 99998655432 1 2234677888864
No 78
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.21 E-value=1.9e-10 Score=96.50 Aligned_cols=105 Identities=14% Similarity=0.233 Sum_probs=73.4
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHh
Q 023482 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFER 211 (281)
Q Consensus 133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~ 211 (281)
+++.+...++.++||+|||.|..+..||++|..|+++|+|+.+++.+++.....+ +|+..+.|+.+..++
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~--------- 92 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP--------- 92 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T---------
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc---------
Confidence 4445565567799999999999999999999999999999999999887766544 799999999887542
Q ss_pred hcCCCCccEEEEcCCC-----cccHHHHHHh---ccCCCCcceEEEe
Q 023482 212 RKSSSGFAKVVANIPF-----NISTDVIKQL---LPMGDIFSEVVLL 250 (281)
Q Consensus 212 ~~~~~~~d~Vi~n~P~-----~~~~~~~~~l---l~~~~~~~~~~~~ 250 (281)
+.+|+|++...+ ...+.++.++ +++||.+-....+
T Consensus 93 ----~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 93 ----EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp ----TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred ----CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 578999884322 3333444444 4556654433333
No 79
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.21 E-value=1.1e-10 Score=97.45 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=73.6
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCE---------EEEEeCCHHHHHHHHHHhcCCC---C
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GAT---------VLAIEKDQHMVGLVRERFASID---Q 188 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~---------v~gvD~s~~~l~~a~~~~~~~~---~ 188 (281)
-...+.++..|+......+++.|||..||+|.+.+..+.. ... ++|.|+++.+++.|++|+...+ .
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 4567888999999999999999999999999999888765 223 8899999999999999998654 7
Q ss_pred eEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (281)
Q Consensus 189 v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~ 230 (281)
+.+.++|+.++++. .+.+|.||+||||...
T Consensus 90 i~~~~~D~~~l~~~------------~~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 90 IDFIQWDARELPLP------------DGSVDAIVTNPPYGRR 119 (179)
T ss_dssp EEEEE--GGGGGGT------------TSBSCEEEEE--STTS
T ss_pred eEEEecchhhcccc------------cCCCCEEEECcchhhh
Confidence 89999999999843 2678999999999754
No 80
>PRK05785 hypothetical protein; Provisional
Probab=99.21 E-value=7.9e-11 Score=101.94 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d 219 (281)
++.+|||+|||||.++..+++. +.+|+|+|+|++|++.|+++. .++++|+.++|+++ ++||
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp~~d------------~sfD 112 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALPFRD------------KSFD 112 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCCCCC------------CCEE
Confidence 4679999999999999999988 679999999999999998642 36789999998765 6788
Q ss_pred EEEEcCCCcc
Q 023482 220 KVVANIPFNI 229 (281)
Q Consensus 220 ~Vi~n~P~~~ 229 (281)
+|+++...++
T Consensus 113 ~v~~~~~l~~ 122 (226)
T PRK05785 113 VVMSSFALHA 122 (226)
T ss_pred EEEecChhhc
Confidence 8888765543
No 81
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.21 E-value=8.1e-11 Score=111.29 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccch
Q 023482 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM 205 (281)
Q Consensus 128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~ 205 (281)
.+.+.+.+.+.+.++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++++..++ |++++++|+.+.. ..
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l-~~-- 355 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL-PK-- 355 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH-HH--
Confidence 345566666666777899999999999999999988899999999999999999987554 8999999997631 10
Q ss_pred hhHHHhhcCCCCccEEEEcCCCcc-cHHHHHHhc
Q 023482 206 LSLFERRKSSSGFAKVVANIPFNI-STDVIKQLL 238 (281)
Q Consensus 206 ~d~v~~~~~~~~~d~Vi~n~P~~~-~~~~~~~ll 238 (281)
+. .....||+|+.+||+.. ...++..+.
T Consensus 356 --~~---~~~~~~D~vi~dPPr~G~~~~~l~~l~ 384 (431)
T TIGR00479 356 --QP---WAGQIPDVLLLDPPRKGCAAEVLRTII 384 (431)
T ss_pred --HH---hcCCCCCEEEECcCCCCCCHHHHHHHH
Confidence 00 12356899999999865 556655544
No 82
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.20 E-value=1e-10 Score=109.06 Aligned_cols=112 Identities=20% Similarity=0.265 Sum_probs=81.4
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~ 197 (281)
++.++......+..+. ++++|||+|||+|.+++.++..++ +|++||+|+.+++.|++|+..++ +++++++|+.
T Consensus 204 ~flDqr~~R~~~~~~~--~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~ 281 (396)
T PRK15128 204 YYLDQRDSRLATRRYV--ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF 281 (396)
T ss_pred cChhhHHHHHHHHHhc--CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence 4455555555555443 578999999999999988776655 99999999999999999987653 6899999987
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCcccHH---------------HHHHhccCCCCc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD---------------VIKQLLPMGDIF 244 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~---------------~~~~ll~~~~~~ 244 (281)
+.-. ++. .....||+||.||||..... ...++++++|.+
T Consensus 282 ~~l~-----~~~---~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~l 335 (396)
T PRK15128 282 KLLR-----TYR---DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGIL 335 (396)
T ss_pred HHHH-----HHH---hcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 6421 000 12457999999999854321 224777888765
No 83
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.20 E-value=1.1e-10 Score=99.50 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.++.+|||+|||+|..+..++.. +.+++|||+|++|++.|+++.. +++++++|+.+ ++. .++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---~~~~~~~d~~~-~~~------------~~s 105 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---NINIIQGSLFD-PFK------------DNF 105 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---CCcEEEeeccC-CCC------------CCC
Confidence 35678999999999999999886 5799999999999999998754 67889999887 543 367
Q ss_pred ccEEEEcCCC
Q 023482 218 FAKVVANIPF 227 (281)
Q Consensus 218 ~d~Vi~n~P~ 227 (281)
||+|+++..+
T Consensus 106 fD~V~~~~vL 115 (204)
T TIGR03587 106 FDLVLTKGVL 115 (204)
T ss_pred EEEEEECChh
Confidence 9999987654
No 84
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.20 E-value=1.5e-10 Score=99.51 Aligned_cols=82 Identities=27% Similarity=0.347 Sum_probs=68.0
Q ss_pred HHHHHHHHHhc--CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482 128 EINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (281)
Q Consensus 128 ~~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~ 202 (281)
.+...+++.+. ..++.+|||+|||+|.++..++..+.+|+|+|++++|++.|+++.... .++++.++|+.+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--
Confidence 34556666665 456789999999999999999998889999999999999999988644 27999999988753
Q ss_pred cchhhHHHhhcCCCCccEEEEc
Q 023482 203 SHMLSLFERRKSSSGFAKVVAN 224 (281)
Q Consensus 203 d~~~d~v~~~~~~~~~d~Vi~n 224 (281)
+.||+|++.
T Consensus 118 -------------~~fD~ii~~ 126 (219)
T TIGR02021 118 -------------GEFDIVVCM 126 (219)
T ss_pred -------------CCcCEEEEh
Confidence 568888874
No 85
>PRK04266 fibrillarin; Provisional
Probab=99.20 E-value=1.9e-10 Score=99.39 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=77.8
Q ss_pred HhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482 136 AAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 136 ~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
.+.+.++.+|||+|||+|..+..++.. ..+|+|+|+++.|++.+.++.....|+.++.+|+.+. . ...++
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~-~--~~~~l----- 138 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKP-E--RYAHV----- 138 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCc-c--hhhhc-----
Confidence 578889999999999999999999987 3599999999999998877766556899999998752 1 01111
Q ss_pred CCCCccEEEEcCCCccc----HHHHHHhccCCCCcceE
Q 023482 214 SSSGFAKVVANIPFNIS----TDVIKQLLPMGDIFSEV 247 (281)
Q Consensus 214 ~~~~~d~Vi~n~P~~~~----~~~~~~ll~~~~~~~~~ 247 (281)
.+.||+|+++.+..+. -..+.+++++||.+...
T Consensus 139 -~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 139 -VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1459999998764322 23456788999987543
No 86
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.20 E-value=2.4e-10 Score=96.64 Aligned_cols=115 Identities=18% Similarity=0.278 Sum_probs=83.6
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~ 198 (281)
..+.+++...+++.+.+.++.+|||+|||+|.++..++.. +.+|+++|+++.+++.+++++... .+++++++|+.+
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 5677788888899998888899999999999999999865 479999999999999999988655 389999999865
Q ss_pred cccccchhhHHHhhcCCCCccEEEEcCC--CcccHHHHHHhccCCCCcceEE
Q 023482 199 CHIRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQLLPMGDIFSEVV 248 (281)
Q Consensus 199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P--~~~~~~~~~~ll~~~~~~~~~~ 248 (281)
.. + .....+|.++.... +...-..+.++++++|.+....
T Consensus 102 ~~------~-----~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 102 CL------A-----QLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred HH------h-----hCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 21 0 00123455555432 2222244456778888764443
No 87
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.19 E-value=9.3e-11 Score=99.12 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
...+|||||||+|.++..++.. ..+|+|+|+++.+++.|+++.... +|++++++|+.+++... ...+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~---------~~~~ 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF---------FPDG 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh---------CCCC
Confidence 4568999999999999999987 569999999999999998887654 48999999998754110 1225
Q ss_pred CccEEEEcCCCccc--------------HHHHHHhccCCCCcceE
Q 023482 217 GFAKVVANIPFNIS--------------TDVIKQLLPMGDIFSEV 247 (281)
Q Consensus 217 ~~d~Vi~n~P~~~~--------------~~~~~~ll~~~~~~~~~ 247 (281)
.+|.|+.|.|-.|. -..+.++++++|.+...
T Consensus 87 ~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 87 SLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred ceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 79999999754321 23356888888887433
No 88
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.19 E-value=1.8e-10 Score=102.35 Aligned_cols=99 Identities=17% Similarity=0.288 Sum_probs=76.9
Q ss_pred hcCCCCCEEEEEcCCccHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHh
Q 023482 137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFER 211 (281)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~ 211 (281)
..+.++++|||+|||+|..+..++.. + .+|+++|+++.+++.|+++.... .+++++.+|+.++++.+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~-------- 144 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD-------- 144 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC--------
Confidence 34568899999999999988877765 3 48999999999999999987654 48999999999887543
Q ss_pred hcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482 212 RKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV 247 (281)
Q Consensus 212 ~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~ 247 (281)
+.||+|++|..++... ..+.+++++||.+...
T Consensus 145 ----~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 145 ----NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred ----CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 5789999886544322 3445888899887543
No 89
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.19 E-value=1.5e-10 Score=107.59 Aligned_cols=102 Identities=22% Similarity=0.336 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (281)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d 207 (281)
....+++.+.+.++.+|||||||+|.++..+++. +++|+|+|+|+++++.|+++.... ++++..+|+.+++
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l~------- 226 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDLN------- 226 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhcC-------
Confidence 3556778888889999999999999999999986 789999999999999999987532 5888888876542
Q ss_pred HHHhhcCCCCccEEEEcCCCccc--------HHHHHHhccCCCCcce
Q 023482 208 LFERRKSSSGFAKVVANIPFNIS--------TDVIKQLLPMGDIFSE 246 (281)
Q Consensus 208 ~v~~~~~~~~~d~Vi~n~P~~~~--------~~~~~~ll~~~~~~~~ 246 (281)
+.||.|+++..++.. -..+.++++++|.+..
T Consensus 227 --------~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 227 --------GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred --------CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 579999987554332 1334578888887643
No 90
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=1.8e-10 Score=102.19 Aligned_cols=90 Identities=22% Similarity=0.360 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhc-CC-CCeEEEEcCccccccc
Q 023482 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFA-SI-DQLKVLQEDFVKCHIR 202 (281)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~-~~-~~v~~~~gD~~~~~~~ 202 (281)
..+++.++......++.+|||+|||+|.++..++.. ..+++|+|+++.+++.|+++.. .. .+++++++|+.+..
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~-- 171 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL-- 171 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--
Confidence 344555555555567789999999999999999987 3799999999999999999976 22 38999999985521
Q ss_pred cchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 203 SHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
..+.||+|++||||..
T Consensus 172 -----------~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 172 -----------PGGRFDLIVSNPPYIP 187 (275)
T ss_pred -----------CCCceeEEEECCCcCC
Confidence 1267999999999953
No 91
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.9e-10 Score=108.01 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=94.5
Q ss_pred ccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcC
Q 023482 118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQED 195 (281)
Q Consensus 118 ~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD 195 (281)
.|.-+......+....++++...++++|||+-||.|.+++.+|....+|+|+|+++++++.|++|.+.++ |++|+.+|
T Consensus 270 F~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ 349 (432)
T COG2265 270 FFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGD 349 (432)
T ss_pred ceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 3333344445566667777788788999999999999999999999999999999999999999998775 89999999
Q ss_pred ccccccccchhhHHHhhcCCCCccEEEEcCCCcccH-HHHHHhccCCCC
Q 023482 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLLPMGDI 243 (281)
Q Consensus 196 ~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-~~~~~ll~~~~~ 243 (281)
++++...- .....+|.||.+||..... ++++.+.+.+..
T Consensus 350 ae~~~~~~---------~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~ 389 (432)
T COG2265 350 AEEFTPAW---------WEGYKPDVVVVDPPRAGADREVLKQLAKLKPK 389 (432)
T ss_pred HHHHhhhc---------cccCCCCEEEECCCCCCCCHHHHHHHHhcCCC
Confidence 99976421 2345789999999997666 777877766655
No 92
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.18 E-value=1.4e-10 Score=111.54 Aligned_cols=76 Identities=18% Similarity=0.359 Sum_probs=63.4
Q ss_pred CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
+.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++...++ +++++++|+.+. ....
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-------------~~~~ 205 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-------------IEKQ 205 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-------------CcCC
Confidence 468999999999999999875 5799999999999999999986543 799999998642 1225
Q ss_pred CccEEEEcCCCccc
Q 023482 217 GFAKVVANIPFNIS 230 (281)
Q Consensus 217 ~~d~Vi~n~P~~~~ 230 (281)
.||+||+||||...
T Consensus 206 ~fDlIvsNPPYi~~ 219 (506)
T PRK01544 206 KFDFIVSNPPYISH 219 (506)
T ss_pred CccEEEECCCCCCc
Confidence 79999999999653
No 93
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.17 E-value=2.9e-10 Score=104.84 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=82.5
Q ss_pred HHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhh
Q 023482 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLS 207 (281)
Q Consensus 132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d 207 (281)
.++..+....+..+||||||+|.++..+|.. ...++|+|+++.+++.|.++....+ |+.++++|+..+.-.
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~----- 187 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL----- 187 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-----
Confidence 3444445556779999999999999999987 5699999999999999998876554 999999999765210
Q ss_pred HHHhhcCCCCccEEEEcCCCccc------------HHHHHHhccCCCCcceEEE
Q 023482 208 LFERRKSSSGFAKVVANIPFNIS------------TDVIKQLLPMGDIFSEVVL 249 (281)
Q Consensus 208 ~v~~~~~~~~~d~Vi~n~P~~~~------------~~~~~~ll~~~~~~~~~~~ 249 (281)
...+.+|.|+.|.|..|. -..+.+++++||.+...+-
T Consensus 188 -----~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 188 -----LPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred -----CCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 234789999999776543 2344588899998765554
No 94
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.17 E-value=1.4e-10 Score=100.90 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=84.9
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcc
Q 023482 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (281)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~ 197 (281)
...+.....+...+...++++|||+|||+|+.++.++.. +++|+++|+++++++.|+++++..+ +++++.||+.
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 445566666666666667889999999999999999875 4699999999999999999998664 7999999998
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcC---CCcccHHHHHHhccCCCCc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANI---PFNISTDVIKQLLPMGDIF 244 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~---P~~~~~~~~~~ll~~~~~~ 244 (281)
+.-. .+... ...+.||.||.+. +|...-+.+.+++++|+.+
T Consensus 131 ~~L~-----~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~i 174 (234)
T PLN02781 131 SALD-----QLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGII 174 (234)
T ss_pred HHHH-----HHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEE
Confidence 7410 00000 1136799999984 4544445556778888765
No 95
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.16 E-value=5e-10 Score=96.02 Aligned_cols=106 Identities=18% Similarity=0.149 Sum_probs=73.7
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc--------------CCCCeEEEEcCccc
Q 023482 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVK 198 (281)
Q Consensus 133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~--------------~~~~v~~~~gD~~~ 198 (281)
.+..+...++.+|||+|||.|..+..||++|.+|+|||+|+.+++.+.+... ...+|+++++|+.+
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~ 105 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA 105 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC
Confidence 4444433466799999999999999999999999999999999998644321 12379999999998
Q ss_pred cccccchhhHHHhhcCCCCccEEEEc-----CCCccc---HHHHHHhccCCCCcceEEE
Q 023482 199 CHIRSHMLSLFERRKSSSGFAKVVAN-----IPFNIS---TDVIKQLLPMGDIFSEVVL 249 (281)
Q Consensus 199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n-----~P~~~~---~~~~~~ll~~~~~~~~~~~ 249 (281)
++.. ..+.||.|+.. +|.... -..+.++++++|.+-...+
T Consensus 106 ~~~~-----------~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 106 LTAA-----------DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCcc-----------cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 7632 11456666643 332221 2345688899886543433
No 96
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.15 E-value=4.3e-10 Score=100.80 Aligned_cols=95 Identities=22% Similarity=0.226 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCC
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++.+|||+|||+|.++..++..++ +|+|+|+|+.+++.|+++...++ ++.+..+|... ...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--------------~~~ 223 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--------------PIE 223 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--------------ccC
Confidence 3678999999999999999988765 89999999999999999987553 56666666322 123
Q ss_pred CCccEEEEcCCCcccH---HHHHHhccCCCCcceEE
Q 023482 216 SGFAKVVANIPFNIST---DVIKQLLPMGDIFSEVV 248 (281)
Q Consensus 216 ~~~d~Vi~n~P~~~~~---~~~~~ll~~~~~~~~~~ 248 (281)
++||+|++|....... +.+.++++++|.+....
T Consensus 224 ~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 224 GKADVIVANILAEVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred CCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 6799999997654333 33457888888774433
No 97
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.15 E-value=2.3e-10 Score=99.74 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhh
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR 212 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~ 212 (281)
.++.+|||+|||+|..+..+++. +.+++|+|+++.|++.|++++... .+++++++|+.++++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----------- 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----------
Confidence 36679999999999999999874 569999999999999999987653 279999999998764
Q ss_pred cCCCCccEEEEcCCCcccH--------HHHHHhccCCCCcceE
Q 023482 213 KSSSGFAKVVANIPFNIST--------DVIKQLLPMGDIFSEV 247 (281)
Q Consensus 213 ~~~~~~d~Vi~n~P~~~~~--------~~~~~ll~~~~~~~~~ 247 (281)
..+|+|+++..+++.. ..+.+.++++|.+...
T Consensus 121 ---~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 121 ---KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred ---CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3468888876554432 2334677888876443
No 98
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.15 E-value=2e-10 Score=109.82 Aligned_cols=105 Identities=17% Similarity=0.260 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHH
Q 023482 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209 (281)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v 209 (281)
...+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++......++++++++|+.+..++
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~------- 98 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN------- 98 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-------
Confidence 4556666666677899999999999999999988899999999999998876544445899999999643211
Q ss_pred HhhcCCCCccEEEEcCCCcccH-----HH---HHHhccCCCCc
Q 023482 210 ERRKSSSGFAKVVANIPFNIST-----DV---IKQLLPMGDIF 244 (281)
Q Consensus 210 ~~~~~~~~~d~Vi~n~P~~~~~-----~~---~~~ll~~~~~~ 244 (281)
...+.||+|+++.++++.. .+ +.++++++|.+
T Consensus 99 ---~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l 138 (475)
T PLN02336 99 ---ISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYI 138 (475)
T ss_pred ---CCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEE
Confidence 2236799999998775432 22 34667777765
No 99
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=4.4e-10 Score=106.14 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=78.2
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCcccc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC 199 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~ 199 (281)
+..+......+...+.+.++.+|||+|||+|..+..+++.. .+|+|+|+++.+++.++++....+ +++++++|+.+.
T Consensus 226 ~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~ 305 (427)
T PRK10901 226 VSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP 305 (427)
T ss_pred EEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 44455556666778888899999999999999999999873 599999999999999999998765 688999999875
Q ss_pred ccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482 200 HIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (281)
Q Consensus 200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~ 228 (281)
+.. .....||.|+.|+|+.
T Consensus 306 ~~~----------~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 306 AQW----------WDGQPFDRILLDAPCS 324 (427)
T ss_pred hhh----------cccCCCCEEEECCCCC
Confidence 310 1235799999999975
No 100
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.15 E-value=7.8e-10 Score=99.96 Aligned_cols=119 Identities=15% Similarity=0.198 Sum_probs=84.0
Q ss_pred cCccccCCHHHHHH-----HHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH---hcCCCCe
Q 023482 119 LGQHYMLNSEINDQ-----LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRER---FASIDQL 189 (281)
Q Consensus 119 ~g~~~~~~~~~~~~-----l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~---~~~~~~v 189 (281)
+.+ +.++.++... ++..+...++++|||||||+|+++..++..++ +|+|||+|+.|+.+++.. .....++
T Consensus 95 l~~-~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v 173 (314)
T TIGR00452 95 LSG-IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRA 173 (314)
T ss_pred ccc-ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCe
Confidence 344 6667666444 44555667789999999999999999998875 799999999999865432 2223478
Q ss_pred EEEEcCccccccccchhhHHHhhcCCCCccEEEEcCC-CcccH-----HHHHHhccCCCCcceEEEee
Q 023482 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP-FNIST-----DVIKQLLPMGDIFSEVVLLL 251 (281)
Q Consensus 190 ~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P-~~~~~-----~~~~~ll~~~~~~~~~~~~~ 251 (281)
.+..+|+.+++.. ..||+|+++-- |+... ..+.+.+++||.+.......
T Consensus 174 ~~~~~~ie~lp~~-------------~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 174 ILEPLGIEQLHEL-------------YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred EEEECCHHHCCCC-------------CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 8999999887632 47999998743 33322 23357888888875544433
No 101
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.13 E-value=3.9e-10 Score=102.80 Aligned_cols=106 Identities=14% Similarity=0.220 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccccccc
Q 023482 127 SEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (281)
Q Consensus 127 ~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d 203 (281)
..+...+++.+.. .++.+|||||||+|.++..+++. +.+|+++|++++|++.|+++.. ..+++++.+|+.++++.+
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp~~~ 176 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLPFPT 176 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCCCCC
Confidence 3455556666554 35679999999999999998875 4699999999999999998764 247899999999887543
Q ss_pred chhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcc
Q 023482 204 HMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFS 245 (281)
Q Consensus 204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~ 245 (281)
+.||+|+++..++... ..+.++++++|.+.
T Consensus 177 ------------~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 177 ------------DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred ------------CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEE
Confidence 6789999976554321 33457888888764
No 102
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.13 E-value=5.9e-10 Score=101.39 Aligned_cols=105 Identities=19% Similarity=0.205 Sum_probs=76.8
Q ss_pred HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHh--c-CCCCeEEEEcCccccccccchh
Q 023482 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF--A-SIDQLKVLQEDFVKCHIRSHML 206 (281)
Q Consensus 131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~--~-~~~~v~~~~gD~~~~~~~d~~~ 206 (281)
+.+...+....+++|||||||+|+++..++..+. .|+|+|+++.++.+++... . ...+++++.+|+.++++
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~----- 186 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA----- 186 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-----
Confidence 4455666666788999999999999999999865 7999999999998654432 2 22489999999998874
Q ss_pred hHHHhhcCCCCccEEEEcC-CCcccH-----HHHHHhccCCCCcceEE
Q 023482 207 SLFERRKSSSGFAKVVANI-PFNIST-----DVIKQLLPMGDIFSEVV 248 (281)
Q Consensus 207 d~v~~~~~~~~~d~Vi~n~-P~~~~~-----~~~~~ll~~~~~~~~~~ 248 (281)
.+.||+|++.- -|+... ..+.+.+++||.+....
T Consensus 187 --------~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 --------LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred --------cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 26789999853 333222 23357778888774433
No 103
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.13 E-value=2.3e-10 Score=98.89 Aligned_cols=106 Identities=24% Similarity=0.350 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcC---CCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccc
Q 023482 128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR 202 (281)
Q Consensus 128 ~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~ 202 (281)
.+...+++.+.. ..+.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++.. .+++++.+|+.+.++.
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~ 95 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLPLE 95 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCCCC
Confidence 344445444432 345689999999999999999874 578999999999999998776 3889999999988753
Q ss_pred cchhhHHHhhcCCCCccEEEEcCCCcccH------HHHHHhccCCCCcceE
Q 023482 203 SHMLSLFERRKSSSGFAKVVANIPFNIST------DVIKQLLPMGDIFSEV 247 (281)
Q Consensus 203 d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~ 247 (281)
+ +.||+|+++..+++.. ..+.++++++|.+...
T Consensus 96 ~------------~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 96 D------------SSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred C------------CceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 2 6799999987665432 3335777888876433
No 104
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.13 E-value=8.5e-10 Score=92.88 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=74.7
Q ss_pred ccCCHHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~ 197 (281)
..++..+.+.+...+. ...+.+|||++||+|.+++.++.+|+ +|++||.++.+++.+++|++..+ +++++++|+.
T Consensus 30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 4555566666666653 23578999999999999999999976 89999999999999999987553 7899999996
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
+.-.. +. .....+|+|+.+|||..
T Consensus 110 ~~l~~-----~~---~~~~~~dvv~~DPPy~~ 133 (189)
T TIGR00095 110 RALKF-----LA---KKPTFDNVIYLDPPFFN 133 (189)
T ss_pred HHHHH-----hh---ccCCCceEEEECcCCCC
Confidence 53100 00 11235899999999954
No 105
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.12 E-value=2.1e-10 Score=102.55 Aligned_cols=120 Identities=28% Similarity=0.271 Sum_probs=78.6
Q ss_pred CCCCcccCc-cccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---
Q 023482 113 RFPRKSLGQ-HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID--- 187 (281)
Q Consensus 113 ~~~~~~~g~-~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~--- 187 (281)
+++...||. +..+.+..++.+-+. ..++++|||+|||+|.+++..++.|+ +|+|+|+|+.+++.|++|...++
T Consensus 134 idPg~AFGTG~H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~ 211 (295)
T PF06325_consen 134 IDPGMAFGTGHHPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED 211 (295)
T ss_dssp ESTTSSS-SSHCHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred ECCCCcccCCCCHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe
Confidence 455566764 233333344444444 34678999999999999999999986 89999999999999999998765
Q ss_pred CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHH---HHHHhccCCCCcceEEEe
Q 023482 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD---VIKQLLPMGDIFSEVVLL 250 (281)
Q Consensus 188 ~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~---~~~~ll~~~~~~~~~~~~ 250 (281)
++.+. ...+. ..+.||+|++|.-...... .+.++++++|.+-..-++
T Consensus 212 ~~~v~--~~~~~--------------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 212 RIEVS--LSEDL--------------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp CEEES--CTSCT--------------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred eEEEE--Eeccc--------------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcccc
Confidence 44432 22221 1278999999976554443 334667777766444443
No 106
>PRK08317 hypothetical protein; Provisional
Probab=99.12 E-value=8.2e-10 Score=95.26 Aligned_cols=106 Identities=23% Similarity=0.284 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcC-CCCeEEEEcCcccccccc
Q 023482 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRS 203 (281)
Q Consensus 128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~-~~~v~~~~gD~~~~~~~d 203 (281)
.+.+.+++.+.+.++.+|||+|||+|.++..++.. ..+++|+|+++.+++.++++... ..+++++.+|+.+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~- 84 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFP- 84 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCC-
Confidence 34556777788888899999999999999999886 35999999999999999988432 24899999999887753
Q ss_pred chhhHHHhhcCCCCccEEEEcCCCccc------HHHHHHhccCCCCcc
Q 023482 204 HMLSLFERRKSSSGFAKVVANIPFNIS------TDVIKQLLPMGDIFS 245 (281)
Q Consensus 204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~~------~~~~~~ll~~~~~~~ 245 (281)
.+.||.|+++..++.. ...+.++++++|.+.
T Consensus 85 -----------~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 85 -----------DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVV 121 (241)
T ss_pred -----------CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEE
Confidence 2678999987554322 133457778888764
No 107
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.11 E-value=1.1e-09 Score=94.26 Aligned_cols=105 Identities=20% Similarity=0.152 Sum_probs=73.6
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc--------------CCCCeEEEEcCccc
Q 023482 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVK 198 (281)
Q Consensus 133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~--------------~~~~v~~~~gD~~~ 198 (281)
.+..+...++.+|||+|||.|..+..||++|.+|+|||+++.+++.+..... ...+|++.++|+.+
T Consensus 29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred HHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC
Confidence 3333444466799999999999999999999999999999999998753221 12379999999998
Q ss_pred cccccchhhHHHhhcCCCCccEEEE-----cCCCcccH---HHHHHhccCCCCcceEE
Q 023482 199 CHIRSHMLSLFERRKSSSGFAKVVA-----NIPFNIST---DVIKQLLPMGDIFSEVV 248 (281)
Q Consensus 199 ~~~~d~~~d~v~~~~~~~~~d~Vi~-----n~P~~~~~---~~~~~ll~~~~~~~~~~ 248 (281)
++..+ .+.||.|+. .+|..... ..+.++++++|.+-...
T Consensus 109 l~~~~-----------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 109 LTAAD-----------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CCccc-----------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 85321 246777774 33332222 44567888887643333
No 108
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.11 E-value=1.6e-09 Score=92.52 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=87.3
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEE-cC
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQ-ED 195 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~-gD 195 (281)
.+..++....+...+...++++|||||+++|+++++||.. .++++++|+++++.+.|++++++.+ +|+++. ||
T Consensus 41 pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gd 120 (219)
T COG4122 41 PIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD 120 (219)
T ss_pred CCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCc
Confidence 3344777777777778888899999999999999999985 4699999999999999999998775 688888 58
Q ss_pred ccccccccchhhHHHhhcCCCCccEEEEcC---CCcccHHHHHHhccCCCCc
Q 023482 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANI---PFNISTDVIKQLLPMGDIF 244 (281)
Q Consensus 196 ~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~---P~~~~~~~~~~ll~~~~~~ 244 (281)
+.+.--. ...++||.||.+. .|-..-+....++++|+.+
T Consensus 121 al~~l~~----------~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGli 162 (219)
T COG4122 121 ALDVLSR----------LLDGSFDLVFIDADKADYPEYLERALPLLRPGGLI 162 (219)
T ss_pred HHHHHHh----------ccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEE
Confidence 7764211 1248899999863 3444445566788888865
No 109
>PLN02672 methionine S-methyltransferase
Probab=99.10 E-value=3.1e-10 Score=116.07 Aligned_cols=96 Identities=14% Similarity=0.245 Sum_probs=72.6
Q ss_pred cCCHHHHHHHHHHhcCC-----CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC----------
Q 023482 124 MLNSEINDQLAAAAAVQ-----EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---------- 186 (281)
Q Consensus 124 ~~~~~~~~~l~~~l~~~-----~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---------- 186 (281)
+.++...+.+++.+... ++.+|||+|||+|.+++.++.. ..+|+|+|+|+.+++.|+.|...+
T Consensus 96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~ 175 (1082)
T PLN02672 96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY 175 (1082)
T ss_pred ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence 45555566666654322 2458999999999999999986 369999999999999999998642
Q ss_pred --------CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482 187 --------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (281)
Q Consensus 187 --------~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~ 230 (281)
++++++++|+.+.. . .....||+||+||||-..
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~-~----------~~~~~fDlIVSNPPYI~~ 216 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYC-R----------DNNIELDRIVGCIPQILN 216 (1082)
T ss_pred ccccccccccEEEEECchhhhc-c----------ccCCceEEEEECCCcCCC
Confidence 26999999987642 1 112369999999999543
No 110
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.10 E-value=5.3e-10 Score=101.10 Aligned_cols=82 Identities=24% Similarity=0.187 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcC---CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-------CCeEEEEcCcc
Q 023482 128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDFV 197 (281)
Q Consensus 128 ~~~~~l~~~l~~---~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~v~~~~gD~~ 197 (281)
.+++.+++.+.. .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++.+.. .++++..+|+.
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 455666666653 25679999999999999999999999999999999999999987642 26788888876
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVAN 224 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n 224 (281)
+++ +.||+|++.
T Consensus 208 ~l~---------------~~fD~Vv~~ 219 (315)
T PLN02585 208 SLS---------------GKYDTVTCL 219 (315)
T ss_pred hcC---------------CCcCEEEEc
Confidence 532 568888875
No 111
>PRK06922 hypothetical protein; Provisional
Probab=99.10 E-value=5.9e-10 Score=108.03 Aligned_cols=100 Identities=11% Similarity=0.231 Sum_probs=75.5
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482 138 AVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 138 ~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
...++.+|||+|||+|..+..+++. +.+|+|+|+++.|++.|+++.... .+++++++|+.+++.. ..
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~----------fe 484 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSS----------FE 484 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccc----------cC
Confidence 3346789999999999999888875 579999999999999999876543 3788999999887611 12
Q ss_pred CCCccEEEEcCCCccc----------------HHHH---HHhccCCCCcceE
Q 023482 215 SSGFAKVVANIPFNIS----------------TDVI---KQLLPMGDIFSEV 247 (281)
Q Consensus 215 ~~~~d~Vi~n~P~~~~----------------~~~~---~~ll~~~~~~~~~ 247 (281)
+++||+|++++++++. ..++ .+.+++||.+...
T Consensus 485 deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 485 KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3679999998776532 1222 3677888877443
No 112
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.10 E-value=7.2e-10 Score=100.21 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=63.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-C---CeEEEE-cCccccccccchhhHHHhhc
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-D---QLKVLQ-EDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~---~v~~~~-gD~~~~~~~d~~~d~v~~~~ 213 (281)
.+.+|||||||+|.+...++.. +.+++|+|+|+.+++.|++++..+ + +|+++. .|..++.. .+. .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~------~i~--~ 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFK------GII--H 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhh------ccc--c
Confidence 4568999999999888888765 679999999999999999999876 2 677754 33332210 000 1
Q ss_pred CCCCccEEEEcCCCcccHHH
Q 023482 214 SSSGFAKVVANIPFNISTDV 233 (281)
Q Consensus 214 ~~~~~d~Vi~n~P~~~~~~~ 233 (281)
..+.||+|++||||+.....
T Consensus 186 ~~~~fDlivcNPPf~~s~~e 205 (321)
T PRK11727 186 KNERFDATLCNPPFHASAAE 205 (321)
T ss_pred cCCceEEEEeCCCCcCcchh
Confidence 24689999999999876543
No 113
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.09 E-value=6.5e-10 Score=100.11 Aligned_cols=97 Identities=22% Similarity=0.293 Sum_probs=87.1
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEc-Ccccc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQE-DFVKC 199 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~g-D~~~~ 199 (281)
-.++|.++..+++.....+|+.|||.-||||.+.+...-.|++++|.|++..|+.-|+.|++.++ ...++.+ |+.++
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 56789999999999999999999999999999999999999999999999999999999999774 6666766 99999
Q ss_pred ccccchhhHHHhhcCCCCccEEEEcCCCcccH
Q 023482 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231 (281)
Q Consensus 200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~ 231 (281)
|+.+ ..+|.|+.+|||...+
T Consensus 259 pl~~------------~~vdaIatDPPYGrst 278 (347)
T COG1041 259 PLRD------------NSVDAIATDPPYGRST 278 (347)
T ss_pred CCCC------------CccceEEecCCCCccc
Confidence 9653 4689999999997665
No 114
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.09 E-value=5.1e-10 Score=103.42 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=78.9
Q ss_pred ccCCHHHHHHHHHH----hcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCc
Q 023482 123 YMLNSEINDQLAAA----AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF 196 (281)
Q Consensus 123 ~~~~~~~~~~l~~~----l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~ 196 (281)
|..++...+.+++. +... +.+|||++||+|.+++.++....+|+|||+++.+++.|++|...++ |++++++|+
T Consensus 185 ~Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~ 263 (362)
T PRK05031 185 TQPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA 263 (362)
T ss_pred eccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH
Confidence 34455544444444 4322 3579999999999999999887799999999999999999987654 899999999
Q ss_pred cccccccchhhHHHhhc----------CCCCccEEEEcCCCccc-HHHHHHhccC
Q 023482 197 VKCHIRSHMLSLFERRK----------SSSGFAKVVANIPFNIS-TDVIKQLLPM 240 (281)
Q Consensus 197 ~~~~~~d~~~d~v~~~~----------~~~~~d~Vi~n~P~~~~-~~~~~~ll~~ 240 (281)
.+.- .. +... . ....||+||.+||+... ..++..+.++
T Consensus 264 ~~~l-~~----~~~~-~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~ 312 (362)
T PRK05031 264 EEFT-QA----MNGV-REFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAY 312 (362)
T ss_pred HHHH-HH----Hhhc-ccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHcc
Confidence 7742 10 0000 0 01258999999999653 4566777663
No 115
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.09 E-value=8.6e-10 Score=95.18 Aligned_cols=84 Identities=26% Similarity=0.280 Sum_probs=65.5
Q ss_pred HHHHHHHHhc---CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482 129 INDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (281)
Q Consensus 129 ~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~ 202 (281)
....++..+. ..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++.... +++++..+|+...
T Consensus 48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--- 124 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--- 124 (230)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc---
Confidence 3444555543 346779999999999999999998889999999999999999987654 3789999994321
Q ss_pred cchhhHHHhhcCCCCccEEEEcCCC
Q 023482 203 SHMLSLFERRKSSSGFAKVVANIPF 227 (281)
Q Consensus 203 d~~~d~v~~~~~~~~~d~Vi~n~P~ 227 (281)
.+.||+|+++..+
T Consensus 125 ------------~~~fD~v~~~~~l 137 (230)
T PRK07580 125 ------------LGRFDTVVCLDVL 137 (230)
T ss_pred ------------cCCcCEEEEcchh
Confidence 2678999986554
No 116
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.09 E-value=4.4e-10 Score=101.69 Aligned_cols=106 Identities=24% Similarity=0.351 Sum_probs=75.1
Q ss_pred CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHhc
Q 023482 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN---------AGATVLAIEKDQHMVGLVRERFA 184 (281)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~---------~~~~v~gvD~s~~~l~~a~~~~~ 184 (281)
..++..|+ |+++..+++.|.+.+...++.+|+|.+||+|.+...+.. ...+++|+|+++.++..|+.++.
T Consensus 20 ~~~k~~G~-~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 20 ESRKKLGQ-FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp CTTTSCGG-C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred Hhccccce-eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 34556677 899999999999999988888999999999999888876 24699999999999999987754
Q ss_pred CCC----CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482 185 SID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (281)
Q Consensus 185 ~~~----~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~ 230 (281)
-.+ +..+.++|....+.. .....||+|++||||...
T Consensus 99 l~~~~~~~~~i~~~d~l~~~~~----------~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDSLENDKF----------IKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HTTHHCBGCEEEES-TTTSHSC----------TST--EEEEEEE--CTCE
T ss_pred hhcccccccccccccccccccc----------ccccccccccCCCCcccc
Confidence 222 456889998765432 113689999999999755
No 117
>PRK04148 hypothetical protein; Provisional
Probab=99.08 E-value=1.2e-09 Score=86.16 Aligned_cols=91 Identities=14% Similarity=0.255 Sum_probs=72.5
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482 129 INDQLAAAAAVQEGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (281)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d 207 (281)
+.+++.+.+...++.+|||||||+|. .+..|++.|.+|+|+|+++..++.++++ .++++.+|+.+-++.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~----- 73 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLE----- 73 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHH-----
Confidence 55666666665567899999999996 8889998899999999999999998876 467999999876542
Q ss_pred HHHhhcCCCCccEEEE-cCCCcccHHHHH
Q 023482 208 LFERRKSSSGFAKVVA-NIPFNISTDVIK 235 (281)
Q Consensus 208 ~v~~~~~~~~~d~Vi~-n~P~~~~~~~~~ 235 (281)
+ ...+|+|.+ +||.....++++
T Consensus 74 ~------y~~a~liysirpp~el~~~~~~ 96 (134)
T PRK04148 74 I------YKNAKLIYSIRPPRDLQPFILE 96 (134)
T ss_pred H------HhcCCEEEEeCCCHHHHHHHHH
Confidence 1 266899998 577777776665
No 118
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.08 E-value=7e-10 Score=92.86 Aligned_cols=124 Identities=18% Similarity=0.402 Sum_probs=84.4
Q ss_pred ccCCHHHHHHHHHHhcCC--CCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482 123 YMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~ 196 (281)
-.+...+.+.+...+... .+.++||+.||+|.+++..+.+|+ +|+.||.|+..+..+++|++..+ +++++.+|+
T Consensus 22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~ 101 (183)
T PF03602_consen 22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDA 101 (183)
T ss_dssp -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSH
T ss_pred CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCH
Confidence 345566777777777753 788999999999999999999976 99999999999999999987554 689999997
Q ss_pred cccccccchhhHHHhhcCCCCccEEEEcCCCcccH---HHHHHhccCCCCcc-eEEEeehhhH
Q 023482 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGDIFS-EVVLLLQEET 255 (281)
Q Consensus 197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~---~~~~~ll~~~~~~~-~~~~~~~~~~ 255 (281)
...-.. .. .....||+|+.+|||.... .++..+.+ .+.+. ...+.++..-
T Consensus 102 ~~~l~~-----~~---~~~~~fDiIflDPPY~~~~~~~~~l~~l~~-~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 102 FKFLLK-----LA---KKGEKFDIIFLDPPYAKGLYYEELLELLAE-NNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHHHHH-----HH---HCTS-EEEEEE--STTSCHHHHHHHHHHHH-TTSEEEEEEEEEEEET
T ss_pred HHHHHh-----hc---ccCCCceEEEECCCcccchHHHHHHHHHHH-CCCCCCCEEEEEEecC
Confidence 653210 00 2457899999999998764 35555544 34443 3444444433
No 119
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.08 E-value=7.3e-10 Score=102.02 Aligned_cols=113 Identities=13% Similarity=0.090 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccc
Q 023482 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (281)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~ 204 (281)
..+.+.+.+.+...+ .+|||+|||+|.+++.++....+|+|||+++++++.|++|...++ +++++.+|+.++.....
T Consensus 184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 262 (353)
T TIGR02143 184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMN 262 (353)
T ss_pred HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHh
Confidence 344555555554333 479999999999999999887799999999999999999987654 89999999977421000
Q ss_pred h---hhHHHhh-cCCCCccEEEEcCCCccc-HHHHHHhccC
Q 023482 205 M---LSLFERR-KSSSGFAKVVANIPFNIS-TDVIKQLLPM 240 (281)
Q Consensus 205 ~---~d~v~~~-~~~~~~d~Vi~n~P~~~~-~~~~~~ll~~ 240 (281)
. ++..... .....||+||.+||.... ..++..+.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~ 303 (353)
T TIGR02143 263 GVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAY 303 (353)
T ss_pred hccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHcC
Confidence 0 0000000 001237999999998653 4565777663
No 120
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.07 E-value=7.6e-10 Score=110.44 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=72.8
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~ 197 (281)
++.+++....++..+. ++++|||+|||+|.+++.++..|+ +|++||+|+.+++.|++|+..++ +++++++|+.
T Consensus 522 ~flDqr~~R~~~~~~~--~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~ 599 (702)
T PRK11783 522 LFLDHRPTRRMIGQMA--KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL 599 (702)
T ss_pred ECHHHHHHHHHHHHhc--CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence 4445544444444433 578999999999999999999876 79999999999999999997552 6899999987
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
+..- .....||+||.|||+..
T Consensus 600 ~~l~-----------~~~~~fDlIilDPP~f~ 620 (702)
T PRK11783 600 AWLK-----------EAREQFDLIFIDPPTFS 620 (702)
T ss_pred HHHH-----------HcCCCcCEEEECCCCCC
Confidence 6320 11367999999999843
No 121
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.06 E-value=5.6e-10 Score=93.04 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=70.7
Q ss_pred HhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 136 ~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++-..-.++||+|||+|.+|..|+.+..+++++|+++.+++.|+++....++|+++++|+.+. .+.
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-------------~P~ 104 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-------------WPE 104 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----------------S
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-------------CCC
Confidence 4554444689999999999999999998899999999999999999999888999999999775 334
Q ss_pred CCccEEEEc-CCCcccH-HHHH-------HhccCCCCcceEE
Q 023482 216 SGFAKVVAN-IPFNIST-DVIK-------QLLPMGDIFSEVV 248 (281)
Q Consensus 216 ~~~d~Vi~n-~P~~~~~-~~~~-------~ll~~~~~~~~~~ 248 (281)
+.||+|+.. .-|+... +.+. ..+.++|.+-.+.
T Consensus 105 ~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 105 GRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp S-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 788888865 5565542 3332 4457777664444
No 122
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.05 E-value=3e-09 Score=91.95 Aligned_cols=107 Identities=20% Similarity=0.285 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcccc
Q 023482 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC 199 (281)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~ 199 (281)
...+...++..+...++.+|||+|||+|..+..++... .+++++|+++.+++.++++.... .+++++.+|+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 44566677777777777899999999999999998874 79999999999999999987652 4799999999887
Q ss_pred ccccchhhHHHhhcCCCCccEEEEcCCCcc---cHHH---HHHhccCCCCc
Q 023482 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNI---STDV---IKQLLPMGDIF 244 (281)
Q Consensus 200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~---~~~~---~~~ll~~~~~~ 244 (281)
++. .+.||+|+.+.-++. ...+ +.++++++|.+
T Consensus 116 ~~~------------~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~l 154 (239)
T PRK00216 116 PFP------------DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRL 154 (239)
T ss_pred CCC------------CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEE
Confidence 643 256888887533221 1222 34667777765
No 123
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.04 E-value=2.4e-09 Score=93.44 Aligned_cols=112 Identities=22% Similarity=0.281 Sum_probs=80.8
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcc
Q 023482 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (281)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~ 197 (281)
+.-+.-+..++..+++.+|.+|||.|+|+|.++..|+.. .++|+..|+.++.++.|+++++..+ ++++.+.|+.
T Consensus 23 IiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 23 IIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp ---HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred eeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 344556788999999999999999999999999999986 4699999999999999999998763 8999999997
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCcc-cHHHHHHhc-cCCCCc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLL-PMGDIF 244 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-~~~~~~~ll-~~~~~~ 244 (281)
+..+.. .....+|.||.++|--| .-+-+.+.| ++|+.+
T Consensus 103 ~~g~~~---------~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i 142 (247)
T PF08704_consen 103 EEGFDE---------ELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRI 142 (247)
T ss_dssp CG--ST---------T-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEE
T ss_pred cccccc---------cccCcccEEEEeCCCHHHHHHHHHHHHhcCCceE
Confidence 644421 11257999999987655 334555666 667665
No 124
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.04 E-value=3.7e-09 Score=85.34 Aligned_cols=104 Identities=22% Similarity=0.385 Sum_probs=86.3
Q ss_pred CCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCCCe
Q 023482 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQL 189 (281)
Q Consensus 113 ~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~v 189 (281)
+...+..|....+..-+++.|...+....+.-|||+|.|||.+|.++..++ ..++++|.|++.+....+.+. .+
T Consensus 20 i~~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---~~ 96 (194)
T COG3963 20 IDNPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---GV 96 (194)
T ss_pred hcCCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---Cc
Confidence 344455666677788899999999999999999999999999999999985 489999999999999988876 56
Q ss_pred EEEEcCccccc--cccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482 190 KVLQEDFVKCH--IRSHMLSLFERRKSSSGFAKVVANIPFN 228 (281)
Q Consensus 190 ~~~~gD~~~~~--~~d~~~d~v~~~~~~~~~d~Vi~n~P~~ 228 (281)
++++||+.++. ..+ ..+..||.||+.+|+-
T Consensus 97 ~ii~gda~~l~~~l~e---------~~gq~~D~viS~lPll 128 (194)
T COG3963 97 NIINGDAFDLRTTLGE---------HKGQFFDSVISGLPLL 128 (194)
T ss_pred cccccchhhHHHHHhh---------cCCCeeeeEEeccccc
Confidence 79999998875 211 4567899999987763
No 125
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=1.9e-09 Score=102.26 Aligned_cols=95 Identities=21% Similarity=0.319 Sum_probs=75.9
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~ 197 (281)
+..+......+...+.+.++++|||+|||+|..+..+++. .++|+++|+++.+++.+++++.+.+ +++++++|+.
T Consensus 232 ~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~ 311 (444)
T PRK14902 232 ITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDAR 311 (444)
T ss_pred EEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 3444444555666777888899999999999999999885 4699999999999999999987664 7999999998
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~ 228 (281)
+++.. . .+.||.|+.|+|+.
T Consensus 312 ~~~~~----------~-~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 312 KVHEK----------F-AEKFDKILVDAPCS 331 (444)
T ss_pred cccch----------h-cccCCEEEEcCCCC
Confidence 76311 1 15799999999964
No 126
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.04 E-value=3.2e-09 Score=90.82 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccccccc
Q 023482 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (281)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d 203 (281)
..+...+++.+...++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++.....+++++++|+.+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~- 103 (223)
T TIGR01934 25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFE- 103 (223)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCC-
Confidence 4556667777766678899999999999999998873 489999999999999998876334899999999987643
Q ss_pred chhhHHHhhcCCCCccEEEEcCCCccc---H---HHHHHhccCCCCcc
Q 023482 204 HMLSLFERRKSSSGFAKVVANIPFNIS---T---DVIKQLLPMGDIFS 245 (281)
Q Consensus 204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~~---~---~~~~~ll~~~~~~~ 245 (281)
.+.||+|+++..++.. . ..+.++++++|.+.
T Consensus 104 -----------~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 104 -----------DNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLV 140 (223)
T ss_pred -----------CCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEE
Confidence 2568988876433221 2 23347778888764
No 127
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.02 E-value=1.3e-09 Score=96.49 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=74.0
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~ 197 (281)
++.+..........+.+.++.+|||+|||+|..+..+++. .++|+++|+++.+++.++++++..+ +++++++|+.
T Consensus 53 ~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~ 132 (264)
T TIGR00446 53 YYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGR 132 (264)
T ss_pred EEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHH
Confidence 3333333333445667788899999999999999999885 3599999999999999999998764 8999999987
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~ 228 (281)
+++. ..+.||+|+.++|..
T Consensus 133 ~~~~------------~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 133 VFGA------------AVPKFDAILLDAPCS 151 (264)
T ss_pred Hhhh------------hccCCCEEEEcCCCC
Confidence 7642 124699999999975
No 128
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.02 E-value=2.2e-09 Score=94.25 Aligned_cols=91 Identities=27% Similarity=0.242 Sum_probs=64.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++...++ +. +...++. ....|
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~----~~~~~~~------------~~~~f 180 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VE----LNVYLPQ------------GDLKA 180 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CC----ceEEEcc------------CCCCc
Confidence 4678999999999999998888765 69999999999999999987543 10 1111111 01258
Q ss_pred cEEEEcCCCcccH---HHHHHhccCCCCcceE
Q 023482 219 AKVVANIPFNIST---DVIKQLLPMGDIFSEV 247 (281)
Q Consensus 219 d~Vi~n~P~~~~~---~~~~~ll~~~~~~~~~ 247 (281)
|+|++|....... +.+.++++++|.+-..
T Consensus 181 D~Vvani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 181 DVIVANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred CEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9999997654333 3345668888876443
No 129
>PRK06202 hypothetical protein; Provisional
Probab=99.02 E-value=1.6e-09 Score=93.95 Aligned_cols=80 Identities=23% Similarity=0.186 Sum_probs=62.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHc----C--CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482 139 VQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (281)
Q Consensus 139 ~~~~~~VLDiGcG~G~~t~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~ 212 (281)
..++.+|||+|||+|.++..++.. + .+|+|+|++++|++.|+++... .++++..+++..++..
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~~~---------- 126 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELVAE---------- 126 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEeccccccc----------
Confidence 346679999999999999888752 3 4999999999999999887643 3677777777666532
Q ss_pred cCCCCccEEEEcCCCcccH
Q 023482 213 KSSSGFAKVVANIPFNIST 231 (281)
Q Consensus 213 ~~~~~~d~Vi~n~P~~~~~ 231 (281)
.++||+|+++..+++..
T Consensus 127 --~~~fD~V~~~~~lhh~~ 143 (232)
T PRK06202 127 --GERFDVVTSNHFLHHLD 143 (232)
T ss_pred --CCCccEEEECCeeecCC
Confidence 36799999997765443
No 130
>PLN02476 O-methyltransferase
Probab=99.02 E-value=2.5e-09 Score=94.71 Aligned_cols=116 Identities=13% Similarity=0.216 Sum_probs=87.5
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~ 196 (281)
....+.....+...+...++++|||||||+|++++.++.. +++|+++|.+++.++.|++++++.+ +|+++.||+
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA 179 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA 179 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 4567777777777777778899999999999999999974 5689999999999999999998764 899999999
Q ss_pred cccccccchhhHHHhhcCCCCccEEEEcCCCcccH---HHHHHhccCCCCc
Q 023482 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGDIF 244 (281)
Q Consensus 197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~---~~~~~ll~~~~~~ 244 (281)
.+.-. .+... ...+.||.||.+.+-.... +...+++++||.+
T Consensus 180 ~e~L~-----~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvI 224 (278)
T PLN02476 180 AESLK-----SMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVI 224 (278)
T ss_pred HHHHH-----HHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEE
Confidence 77411 00000 1135799999987643222 3445677788765
No 131
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=1.9e-09 Score=93.43 Aligned_cols=99 Identities=20% Similarity=0.308 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhc---CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccc
Q 023482 127 SEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK 198 (281)
Q Consensus 127 ~~~~~~l~~~l~---~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~ 198 (281)
.++++.+++.+. ...+..|||+|||+|.++..++.. .+.|+|||.++.++..|.+|..++ +.+.+++-+.+.
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 345666666554 234568999999999999999886 569999999999999999998765 478888665543
Q ss_pred cccccchhhHHHhhcCCCCccEEEEcCCCcccHH
Q 023482 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232 (281)
Q Consensus 199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~ 232 (281)
--+..+. ...+..|++++||||-...+
T Consensus 211 d~~~~~~-------l~~~~~dllvsNPPYI~~dD 237 (328)
T KOG2904|consen 211 DASDEHP-------LLEGKIDLLVSNPPYIRKDD 237 (328)
T ss_pred ccccccc-------cccCceeEEecCCCcccccc
Confidence 2211100 12378999999999965554
No 132
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.01 E-value=3e-09 Score=92.14 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccch
Q 023482 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM 205 (281)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~ 205 (281)
+..+..+...+...++.+|||||||+|.++..+++.+.+++++|+++.+++.++++....+ +++++.+|+.+++.
T Consensus 34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---- 109 (233)
T PRK05134 34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAA---- 109 (233)
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhh----
Confidence 3445566666656678899999999999999999888899999999999999998876443 67888888876542
Q ss_pred hhHHHhhcCCCCccEEEEcCCCccc---H---HHHHHhccCCCCcc
Q 023482 206 LSLFERRKSSSGFAKVVANIPFNIS---T---DVIKQLLPMGDIFS 245 (281)
Q Consensus 206 ~d~v~~~~~~~~~d~Vi~n~P~~~~---~---~~~~~ll~~~~~~~ 245 (281)
...+.||+|+++..+... . ..+.+++.++|.+.
T Consensus 110 -------~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 110 -------EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred -------hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEE
Confidence 123679999886443321 1 23346777777653
No 133
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.98 E-value=1.9e-09 Score=104.48 Aligned_cols=105 Identities=13% Similarity=0.242 Sum_probs=78.5
Q ss_pred ccCccccCCHHHHHHHHHHhcCC-------CCCEEEEEcCCccHHHHHHHHcC----------CEEEEEeCCHHHHHHHH
Q 023482 118 SLGQHYMLNSEINDQLAAAAAVQ-------EGDIVLEIGPGTGSLTNVLLNAG----------ATVLAIEKDQHMVGLVR 180 (281)
Q Consensus 118 ~~g~~~~~~~~~~~~l~~~l~~~-------~~~~VLDiGcG~G~~t~~la~~~----------~~v~gvD~s~~~l~~a~ 180 (281)
..|+ |++++.+++.|++.+... ...+|||.|||+|.+...++... .+++|+|+++.++..++
T Consensus 2 ~~Gq-fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~ 80 (524)
T TIGR02987 2 AYGT-FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK 80 (524)
T ss_pred CCcc-cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence 3567 999999999999887432 33589999999999998887631 47899999999999999
Q ss_pred HHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482 181 ERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (281)
Q Consensus 181 ~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~ 230 (281)
.++...+ .+.+.++|.....+.... ...+.||+||+||||...
T Consensus 81 ~~l~~~~~~~~~i~~~d~l~~~~~~~~-------~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 81 KLLGEFALLEINVINFNSLSYVLLNIE-------SYLDLFDIVITNPPYGRL 125 (524)
T ss_pred HHHhhcCCCCceeeecccccccccccc-------cccCcccEEEeCCCcccc
Confidence 8876554 566777776543221000 123579999999999753
No 134
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.98 E-value=2.1e-09 Score=92.56 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=70.3
Q ss_pred CEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
++|||||||+|..+..+++. +.+|+|+|+|+.+++.+++++... ++++++.+|+.+.+++ +.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-------------~~ 67 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-------------DT 67 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-------------CC
Confidence 37999999999999999886 469999999999999999988653 3789999999766532 46
Q ss_pred ccEEEEcCCCcc------cHHHHHHhccCCCCcceE
Q 023482 218 FAKVVANIPFNI------STDVIKQLLPMGDIFSEV 247 (281)
Q Consensus 218 ~d~Vi~n~P~~~------~~~~~~~ll~~~~~~~~~ 247 (281)
||+|+++..++. .-..+.++++++|.+...
T Consensus 68 fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 68 YDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred CCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 899988533221 113345788888876543
No 135
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.97 E-value=2.5e-09 Score=100.95 Aligned_cols=95 Identities=14% Similarity=0.245 Sum_probs=76.8
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~ 197 (281)
++.+......+...+.+.++.+|||+|||+|..|..++.. +++|+++|+++.+++.+++++.+.+ +++++++|+.
T Consensus 219 ~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~ 298 (431)
T PRK14903 219 ATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE 298 (431)
T ss_pred EEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence 4444445555666778888999999999999999999886 4699999999999999999988664 7899999998
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~ 228 (281)
+++. ...+.||.|+.++|..
T Consensus 299 ~l~~-----------~~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 299 RLTE-----------YVQDTFDRILVDAPCT 318 (431)
T ss_pred hhhh-----------hhhccCCEEEECCCCC
Confidence 7641 1125799999999983
No 136
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.97 E-value=7.8e-11 Score=88.34 Aligned_cols=75 Identities=28% Similarity=0.374 Sum_probs=47.5
Q ss_pred EEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEE
Q 023482 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (281)
Q Consensus 146 LDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~V 221 (281)
||||||+|.++..+++. ..+++|+|+|+.|++.|++++.... +...+..+..+.... ...+.||+|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~fD~V 70 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY----------DPPESFDLV 70 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C----------CC----SEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc----------cccccccee
Confidence 79999999999999988 6799999999999988888877554 444444444443211 112589999
Q ss_pred EEcCCCccc
Q 023482 222 VANIPFNIS 230 (281)
Q Consensus 222 i~n~P~~~~ 230 (281)
+++..+++.
T Consensus 71 ~~~~vl~~l 79 (99)
T PF08242_consen 71 VASNVLHHL 79 (99)
T ss_dssp EEE-TTS--
T ss_pred hhhhhHhhh
Confidence 998666554
No 137
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.97 E-value=3.6e-09 Score=90.01 Aligned_cols=113 Identities=22% Similarity=0.242 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccc
Q 023482 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC 199 (281)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~ 199 (281)
.+.....+...+....+++||||||++|++++.|+.. +++|+++|++++..+.|++++...+ +|+++.||+.+.
T Consensus 30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH
T ss_pred CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh
Confidence 3444444444444456789999999999999999985 6799999999999999999998664 899999999874
Q ss_pred ccccchhhHHHhhcCCCCccEEEEcCCCcccHH---HHHHhccCCCCc
Q 023482 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTD---VIKQLLPMGDIF 244 (281)
Q Consensus 200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~---~~~~ll~~~~~~ 244 (281)
-.. +... ...+.||.||.+-.-..... .+.+++++|+.+
T Consensus 110 l~~-----l~~~-~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvi 151 (205)
T PF01596_consen 110 LPE-----LAND-GEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVI 151 (205)
T ss_dssp HHH-----HHHT-TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEE
T ss_pred HHH-----HHhc-cCCCceeEEEEcccccchhhHHHHHhhhccCCeEE
Confidence 110 0000 11357999999865433333 334666666544
No 138
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.96 E-value=2.2e-09 Score=98.87 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccc
Q 023482 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR 202 (281)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~ 202 (281)
....+.+.++++++..++ .|||+-||+|.+++.||....+|+|||+++.+++.|+.|...++ |++|+.+++.++...
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~ 259 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKA 259 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCH
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHH
Confidence 334556666666776655 89999999999999999999999999999999999999998665 999999998775321
Q ss_pred cc---hhhHHHhh-cCCCCccEEEEcCCCcccHHHHHHhc
Q 023482 203 SH---MLSLFERR-KSSSGFAKVVANIPFNISTDVIKQLL 238 (281)
Q Consensus 203 d~---~~d~v~~~-~~~~~~d~Vi~n~P~~~~~~~~~~ll 238 (281)
-. .++.+... .....+|+|+.+||.....+.+..++
T Consensus 260 ~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 260 LAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp HCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred HHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 00 01101000 12236899999999976665444343
No 139
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.96 E-value=1.9e-09 Score=91.29 Aligned_cols=110 Identities=21% Similarity=0.322 Sum_probs=70.0
Q ss_pred cCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEE
Q 023482 119 LGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID---QLKVLQ 193 (281)
Q Consensus 119 ~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~--~~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~ 193 (281)
+...|+.+....++..-.-...++..|+|+.||.|.+++.+|+ .+..|+++|++|.+++.++++...++ ++.+++
T Consensus 79 ~~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~ 158 (200)
T PF02475_consen 79 LSKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVIN 158 (200)
T ss_dssp TTTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEE
T ss_pred cceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEc
Confidence 3444544444433332222355789999999999999999999 46799999999999999999987653 799999
Q ss_pred cCccccccccchhhHHHhhcCCCCccEEEEcCCCcc--cHHHHHHhccCC
Q 023482 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI--STDVIKQLLPMG 241 (281)
Q Consensus 194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~--~~~~~~~ll~~~ 241 (281)
+|+.++.. ...+|.|++|+|... .-+....+++.+
T Consensus 159 ~D~~~~~~-------------~~~~drvim~lp~~~~~fl~~~~~~~~~~ 195 (200)
T PF02475_consen 159 GDAREFLP-------------EGKFDRVIMNLPESSLEFLDAALSLLKEG 195 (200)
T ss_dssp S-GGG----------------TT-EEEEEE--TSSGGGGHHHHHHHEEEE
T ss_pred CCHHHhcC-------------ccccCEEEECChHHHHHHHHHHHHHhcCC
Confidence 99998752 478999999999643 223344555544
No 140
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=6.7e-09 Score=89.61 Aligned_cols=105 Identities=20% Similarity=0.279 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccc
Q 023482 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH 200 (281)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~ 200 (281)
|.-+..++..+++.++.+|+|.|.|+|.++..|+.. .++|+++|+.++.++.|++|++..+ ++++..+|+.+.-
T Consensus 80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 344677888999999999999999999999999975 3699999999999999999998753 5999999998864
Q ss_pred cccchhhHHHhhcCCCCccEEEEcCCCcccH-HHHHHhccCCCCc
Q 023482 201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLLPMGDIF 244 (281)
Q Consensus 201 ~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~-~~~~~ll~~~~~~ 244 (281)
+ ...+|+||.++|--|.. +-+..++++++.+
T Consensus 160 ~-------------~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~ 191 (256)
T COG2519 160 D-------------EEDVDAVFLDLPDPWNVLEHVSDALKPGGVV 191 (256)
T ss_pred c-------------ccccCEEEEcCCChHHHHHHHHHHhCCCcEE
Confidence 3 24789999998754433 4445677777654
No 141
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.95 E-value=4.1e-09 Score=100.05 Aligned_cols=92 Identities=10% Similarity=0.193 Sum_probs=74.0
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~ 197 (281)
+..+..........+.+.++++|||+|||+|..+..+++. +++|+|+|+++.+++.+++++...+ +++++++|+.
T Consensus 232 ~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~ 311 (445)
T PRK14904 232 VSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDAR 311 (445)
T ss_pred EEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccc
Confidence 3444444445556677778899999999999999988874 4599999999999999999987664 7999999998
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCC
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~ 227 (281)
+++ ....||+|+.++|.
T Consensus 312 ~~~-------------~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 312 SFS-------------PEEQPDAILLDAPC 328 (445)
T ss_pred ccc-------------cCCCCCEEEEcCCC
Confidence 764 12579999999886
No 142
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=3.8e-09 Score=100.00 Aligned_cols=98 Identities=13% Similarity=0.247 Sum_probs=77.0
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~ 197 (281)
+..+......+...+.+.++++|||+|||+|..+..+++. .++|+++|+++.+++.+++++...+ +++++++|+.
T Consensus 234 ~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~ 313 (434)
T PRK14901 234 WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR 313 (434)
T ss_pred EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh
Confidence 4444455556666788888999999999999999999886 3599999999999999999988765 7999999998
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~ 228 (281)
+++.... ...+.||.|+.++|..
T Consensus 314 ~~~~~~~--------~~~~~fD~Vl~DaPCS 336 (434)
T PRK14901 314 NLLELKP--------QWRGYFDRILLDAPCS 336 (434)
T ss_pred hcccccc--------cccccCCEEEEeCCCC
Confidence 7641100 0125799999998853
No 143
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.93 E-value=1.9e-09 Score=88.04 Aligned_cols=80 Identities=21% Similarity=0.214 Sum_probs=57.8
Q ss_pred CEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482 143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d 219 (281)
..|+|+.||.|..++.+|+...+|++||+|+..++.|+.|..-++ +|++++||+.++...- .....+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~---------~~~~~~D 71 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRL---------KSNKIFD 71 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------------S
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhc---------ccccccc
Confidence 369999999999999999998899999999999999999988765 8999999998853210 1112279
Q ss_pred EEEEcCCCcccH
Q 023482 220 KVVANIPFNIST 231 (281)
Q Consensus 220 ~Vi~n~P~~~~~ 231 (281)
+|+.+||+....
T Consensus 72 ~vFlSPPWGGp~ 83 (163)
T PF09445_consen 72 VVFLSPPWGGPS 83 (163)
T ss_dssp EEEE---BSSGG
T ss_pred EEEECCCCCCcc
Confidence 999999987533
No 144
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.93 E-value=8.6e-09 Score=88.60 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHhcC----CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcccc
Q 023482 126 NSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC 199 (281)
Q Consensus 126 ~~~~~~~l~~~l~~----~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~ 199 (281)
++..+.++...+.. ..+.+|||+|||+|.++..+++.+.+++++|+++.+++.++.+....+ ++++.++|+.+.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 105 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDL 105 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh
Confidence 33344555555542 347799999999999999999888899999999999999998876543 589999998877
Q ss_pred ccccchhhHHHhhcCCCCccEEEEcCCCccc---H---HHHHHhccCCCCc
Q 023482 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS---T---DVIKQLLPMGDIF 244 (281)
Q Consensus 200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~---~---~~~~~ll~~~~~~ 244 (281)
+.. ..+.||+|+++..++.. . ..+.++++++|.+
T Consensus 106 ~~~-----------~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l 145 (224)
T TIGR01983 106 AEK-----------GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGIL 145 (224)
T ss_pred hcC-----------CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEE
Confidence 532 13679999886433221 1 2334666777754
No 145
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.92 E-value=1.6e-08 Score=83.94 Aligned_cols=99 Identities=24% Similarity=0.376 Sum_probs=78.6
Q ss_pred cCCHHHHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcc
Q 023482 124 MLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFV 197 (281)
Q Consensus 124 ~~~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~ 197 (281)
.+...+.+.+...+.. -.+.++||+.+|+|.+++..+.+|+ .++.||.|..++..+++|++.. ++++++..|+.
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~ 103 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL 103 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH
Confidence 4445667777777765 4788999999999999999999976 9999999999999999998754 38999999998
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCcccH
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~ 231 (281)
..-. .+.....||+|+.+|||+...
T Consensus 104 ~~L~---------~~~~~~~FDlVflDPPy~~~l 128 (187)
T COG0742 104 RALK---------QLGTREPFDLVFLDPPYAKGL 128 (187)
T ss_pred HHHH---------hcCCCCcccEEEeCCCCccch
Confidence 4311 002223599999999998544
No 146
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.92 E-value=3.2e-09 Score=89.35 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=66.5
Q ss_pred ccCCHHHHHHHHHHhcCCC--CCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcc-cc
Q 023482 123 YMLNSEINDQLAAAAAVQE--GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFV-KC 199 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~--~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~-~~ 199 (281)
..++.++.++.++.+.+.. +.-|||||||+|..+..+...|...+|+|+|+.|++.|.+..-+ -.++.+|+- -+
T Consensus 30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e---gdlil~DMG~Gl 106 (270)
T KOG1541|consen 30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE---GDLILCDMGEGL 106 (270)
T ss_pred eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh---cCeeeeecCCCC
Confidence 3455677888888887766 56899999999999999999999999999999999999863221 247777764 46
Q ss_pred ccccchhhHHHhhcCCCCccEEEE
Q 023482 200 HIRSHMLSLFERRKSSSGFAKVVA 223 (281)
Q Consensus 200 ~~~d~~~d~v~~~~~~~~~d~Vi~ 223 (281)
||.. +.||.+|+
T Consensus 107 pfrp------------GtFDg~IS 118 (270)
T KOG1541|consen 107 PFRP------------GTFDGVIS 118 (270)
T ss_pred CCCC------------CccceEEE
Confidence 7654 66676665
No 147
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.92 E-value=1e-08 Score=87.69 Aligned_cols=95 Identities=23% Similarity=0.341 Sum_probs=65.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 139 VQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 139 ~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
+.++.+|||+|||+|.++..+++. ..+|+|||+++ + ....+++++++|+.+.+..+. +... ...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~---i~~~-~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKA---LLER-VGD 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHH---HHHH-hCC
Confidence 357789999999999999999887 25999999998 2 122479999999987542110 0000 234
Q ss_pred CCccEEEEcC-CCccc----------------HHHHHHhccCCCCcce
Q 023482 216 SGFAKVVANI-PFNIS----------------TDVIKQLLPMGDIFSE 246 (281)
Q Consensus 216 ~~~d~Vi~n~-P~~~~----------------~~~~~~ll~~~~~~~~ 246 (281)
+.+|+|++|+ |+... -....+++++||.+..
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 6799999986 32211 1334578888887744
No 148
>PRK00811 spermidine synthase; Provisional
Probab=98.92 E-value=7.7e-09 Score=92.48 Aligned_cols=95 Identities=20% Similarity=0.323 Sum_probs=72.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcC-------CCCeEEEEcCccccccccchhhHHH
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFE 210 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~-------~~~v~~~~gD~~~~~~~d~~~d~v~ 210 (281)
..+++||+||||+|.++..+++. + .+|++||+|+.+++.|++.+.. .++++++.+|+.+.-.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~--------- 145 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA--------- 145 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh---------
Confidence 35679999999999999999887 3 5999999999999999998752 3489999999987421
Q ss_pred hhcCCCCccEEEEcC--CCccc-----H---HHHHHhccCCCCcc
Q 023482 211 RRKSSSGFAKVVANI--PFNIS-----T---DVIKQLLPMGDIFS 245 (281)
Q Consensus 211 ~~~~~~~~d~Vi~n~--P~~~~-----~---~~~~~ll~~~~~~~ 245 (281)
...+.||+||++. |+... . ..+++.|+++|.+.
T Consensus 146 --~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv 188 (283)
T PRK00811 146 --ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFV 188 (283)
T ss_pred --hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 2246899999974 44222 1 23457778888763
No 149
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.91 E-value=5.4e-09 Score=86.97 Aligned_cols=90 Identities=23% Similarity=0.366 Sum_probs=65.1
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc--ccccchhhHH
Q 023482 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC--HIRSHMLSLF 209 (281)
Q Consensus 133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~--~~~d~~~d~v 209 (281)
+.+++. ++.+|||+|||.|.+...|.+. +.+.+|||++++.+..+.++ .+.++++|+.+- .++
T Consensus 7 I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~------- 72 (193)
T PF07021_consen 7 IAEWIE--PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFP------- 72 (193)
T ss_pred HHHHcC--CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCC-------
Confidence 444444 7889999999999999999885 78999999999999888765 678999999773 233
Q ss_pred HhhcCCCCccEEEEcCCCc---ccHHHHHHhccCC
Q 023482 210 ERRKSSSGFAKVVANIPFN---ISTDVIKQLLPMG 241 (281)
Q Consensus 210 ~~~~~~~~~d~Vi~n~P~~---~~~~~~~~ll~~~ 241 (281)
+++||.||.+-..+ .+..++..++.-+
T Consensus 73 -----d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVg 102 (193)
T PF07021_consen 73 -----DQSFDYVILSQTLQAVRRPDEVLEEMLRVG 102 (193)
T ss_pred -----CCCccEEehHhHHHhHhHHHHHHHHHHHhc
Confidence 36677777764332 2234444554433
No 150
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.90 E-value=3e-08 Score=85.42 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc--------------CCCCeE
Q 023482 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLK 190 (281)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~--------------~~~~v~ 190 (281)
.++.+.+.+ ..+...++.+||.+|||.|.-+..|+.+|.+|+|+|+|+.+++.+.+... ...+++
T Consensus 28 pnp~L~~~~-~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 28 PNEFLVKHF-SKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CCHHHHHHH-HhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 344455554 33444466799999999999999999999999999999999999866321 123899
Q ss_pred EEEcCccccccccchhhHHHhhcCCCCccEEEEc-----CCCcccH---HHHHHhccCCCCcceEE
Q 023482 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-----IPFNIST---DVIKQLLPMGDIFSEVV 248 (281)
Q Consensus 191 ~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n-----~P~~~~~---~~~~~ll~~~~~~~~~~ 248 (281)
++++|+.+++... ...+.||.|+-- +|-.... ..+.+++++++.+-...
T Consensus 107 ~~~gD~f~l~~~~---------~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 107 IYVADIFNLPKIA---------NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred EEEccCcCCCccc---------cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 9999999986421 112467776653 3332222 33457788887754433
No 151
>PRK04457 spermidine synthase; Provisional
Probab=98.90 E-value=1.4e-08 Score=89.76 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=74.9
Q ss_pred HHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482 129 INDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (281)
Q Consensus 129 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~ 202 (281)
+...|...+. ..++.+|||||||+|.++..+++. +.++++||+++++++.|++++... ++++++.+|+.+.-.
T Consensus 53 y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~- 131 (262)
T PRK04457 53 YTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA- 131 (262)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH-
Confidence 3444433332 335678999999999999999876 569999999999999999987632 489999999876421
Q ss_pred cchhhHHHhhcCCCCccEEEEcC------CCcc-cH---HHHHHhccCCCCcce
Q 023482 203 SHMLSLFERRKSSSGFAKVVANI------PFNI-ST---DVIKQLLPMGDIFSE 246 (281)
Q Consensus 203 d~~~d~v~~~~~~~~~d~Vi~n~------P~~~-~~---~~~~~ll~~~~~~~~ 246 (281)
...+.||+|+.+. |.+. .. ..+.+.++++|.+..
T Consensus 132 ----------~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 132 ----------VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred ----------hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEE
Confidence 1235789999763 1111 12 233477788887643
No 152
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.89 E-value=6.5e-09 Score=84.16 Aligned_cols=92 Identities=21% Similarity=0.233 Sum_probs=65.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482 139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 139 ~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
..++.+|||||||+|.++..+++.+.+++|+|+++.+++. .++.....+....+ ...+.|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~------------~~~~~f 79 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPP------------FPDGSF 79 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHH------------CHSSSE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhh------------ccccch
Confidence 4577899999999999999998888999999999999988 13334444333332 234789
Q ss_pred cEEEEcCCCcccH------HHHHHhccCCCCcceEEEe
Q 023482 219 AKVVANIPFNIST------DVIKQLLPMGDIFSEVVLL 250 (281)
Q Consensus 219 d~Vi~n~P~~~~~------~~~~~ll~~~~~~~~~~~~ 250 (281)
|+|+++--+++.. ..+.++++++|.+-.....
T Consensus 80 D~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 80 DLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp EEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred hhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 9999976554433 2334777777776444433
No 153
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.89 E-value=7.7e-09 Score=87.29 Aligned_cols=93 Identities=23% Similarity=0.346 Sum_probs=67.4
Q ss_pred HHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccc-cccccchhhHH
Q 023482 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-CHIRSHMLSLF 209 (281)
Q Consensus 132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~-~~~~d~~~d~v 209 (281)
.+.+.+. ++.+|||+|||+|.++..+++. +..++|+|+++++++.++.+ +++++++|+.+ ++.
T Consensus 6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~-------- 70 (194)
T TIGR02081 6 SILNLIP--PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEA-------- 70 (194)
T ss_pred HHHHhcC--CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccc--------
Confidence 3444443 5679999999999999999876 56899999999999988652 57889999875 321
Q ss_pred HhhcCCCCccEEEEcCCCcccH---HHHHHhccCCC
Q 023482 210 ERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGD 242 (281)
Q Consensus 210 ~~~~~~~~~d~Vi~n~P~~~~~---~~~~~ll~~~~ 242 (281)
...++||+|+++..+++.. ..++.+.+..+
T Consensus 71 ---~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 71 ---FPDKSFDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred ---cCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 1236799999997765443 34555555444
No 154
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.2e-08 Score=93.12 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=79.3
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC---------------------------------------
Q 023482 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--------------------------------------- 164 (281)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~--------------------------------------- 164 (281)
.....++..|+...+..++..++|.-||+|.+++..|..+.
T Consensus 174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 44567788888888888888999999999999998887643
Q ss_pred --EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 165 --TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 165 --~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
.++|+|+|+.+++.|+.|..+.+ -|+|.++|+.++.- ....+|+||+||||..
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~------------~~~~~gvvI~NPPYGe 311 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKE------------PLEEYGVVISNPPYGE 311 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCC------------CCCcCCEEEeCCCcch
Confidence 37899999999999999998765 79999999999852 2267899999999963
No 155
>PLN03075 nicotianamine synthase; Provisional
Probab=98.86 E-value=1.8e-08 Score=89.88 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=68.8
Q ss_pred HHHHHhcCCCCCEEEEEcCCccHHHH-HHHH-c--CCEEEEEeCCHHHHHHHHHHhcC-C---CCeEEEEcCcccccccc
Q 023482 132 QLAAAAAVQEGDIVLEIGPGTGSLTN-VLLN-A--GATVLAIEKDQHMVGLVRERFAS-I---DQLKVLQEDFVKCHIRS 203 (281)
Q Consensus 132 ~l~~~l~~~~~~~VLDiGcG~G~~t~-~la~-~--~~~v~gvD~s~~~l~~a~~~~~~-~---~~v~~~~gD~~~~~~~d 203 (281)
.++..+...++++|+|||||.|.++. .++. . +.+++|+|+|+++++.|++.+.. . ++++|..+|+.+.+
T Consensus 114 ~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~--- 190 (296)
T PLN03075 114 DLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT--- 190 (296)
T ss_pred HHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc---
Confidence 34444444477899999999775443 3332 2 56899999999999999999853 2 37999999998853
Q ss_pred chhhHHHhhcCCCCccEEEEcCCCcc----cH---HHHHHhccCCCCc
Q 023482 204 HMLSLFERRKSSSGFAKVVANIPFNI----ST---DVIKQLLPMGDIF 244 (281)
Q Consensus 204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~----~~---~~~~~ll~~~~~~ 244 (281)
...+.||+|+...-.++ .. .-+.+.+++|+.+
T Consensus 191 ---------~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~L 229 (296)
T PLN03075 191 ---------ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALL 229 (296)
T ss_pred ---------cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEE
Confidence 12367999999832222 11 2234556677655
No 156
>PTZ00146 fibrillarin; Provisional
Probab=98.86 E-value=2e-08 Score=89.21 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=71.3
Q ss_pred hcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482 137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
+.+.++.+|||+|||+|.++..++.. ...|++||+++.+.+..........||.++.+|+..-. . +. .
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~---y~-----~ 198 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-K---YR-----M 198 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-h---hh-----c
Confidence 45678899999999999999999997 25899999999876555544433358999999986421 0 00 1
Q ss_pred CCCCccEEEEcCCCcccH----HHHHHhccCCCCcce
Q 023482 214 SSSGFAKVVANIPFNIST----DVIKQLLPMGDIFSE 246 (281)
Q Consensus 214 ~~~~~d~Vi~n~P~~~~~----~~~~~ll~~~~~~~~ 246 (281)
....+|+|+++....... ....++|++++.+..
T Consensus 199 ~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 199 LVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred ccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEE
Confidence 124689999987542222 223578899887643
No 157
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.85 E-value=1.2e-08 Score=89.21 Aligned_cols=116 Identities=13% Similarity=0.126 Sum_probs=83.5
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcc
Q 023482 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (281)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~ 197 (281)
...+.....+...+.....++|||||+++|+++++|+.. +++|+++|.+++..+.|++++...+ +|+++.||+.
T Consensus 62 ~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~ 141 (247)
T PLN02589 62 TTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence 344666666666666667889999999999999999975 5699999999999999999998664 8999999987
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCC---CcccHHHHHHhccCCCCc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIP---FNISTDVIKQLLPMGDIF 244 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P---~~~~~~~~~~ll~~~~~~ 244 (281)
+.-.. +.......+.||.||.+-- |...-+.+.+++.+|+.+
T Consensus 142 e~L~~-----l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGvi 186 (247)
T PLN02589 142 PVLDQ-----MIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVI 186 (247)
T ss_pred HHHHH-----HHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEE
Confidence 74110 0000001258999998643 222224445777887765
No 158
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.84 E-value=1.8e-08 Score=95.11 Aligned_cols=96 Identities=17% Similarity=0.210 Sum_probs=74.7
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-C--eEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-Q--LKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~--v~~~~gD~~ 197 (281)
+..+......+...+.+.++.+|||+|||+|..+..+++. .++|+|+|+++.+++.+++++++.+ . +++..+|..
T Consensus 220 ~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~ 299 (426)
T TIGR00563 220 VTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGR 299 (426)
T ss_pred EEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 4444556667777888889999999999999999999986 3699999999999999999998665 3 344677766
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~ 228 (281)
..+.. .....||.|+.++|..
T Consensus 300 ~~~~~----------~~~~~fD~VllDaPcS 320 (426)
T TIGR00563 300 GPSQW----------AENEQFDRILLDAPCS 320 (426)
T ss_pred ccccc----------ccccccCEEEEcCCCC
Confidence 54321 1236799999998865
No 159
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.9e-08 Score=82.37 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
....++|||||+|..+..|++. .....++|+|+.+++..++....++ ++.+++.|.... ...+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-------------l~~~ 109 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-------------LRNE 109 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-------------hccC
Confidence 4678999999999999999986 3589999999999999888877665 788999998764 3348
Q ss_pred CccEEEEcCCCcccH
Q 023482 217 GFAKVVANIPFNIST 231 (281)
Q Consensus 217 ~~d~Vi~n~P~~~~~ 231 (281)
+.|+++-||||...+
T Consensus 110 ~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 110 SVDVLVFNPPYVPTS 124 (209)
T ss_pred CccEEEECCCcCcCC
Confidence 899999999996443
No 160
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.83 E-value=2.5e-08 Score=99.60 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=77.9
Q ss_pred ccCCHHHHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHc---------------------------------------
Q 023482 123 YMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--------------------------------------- 162 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~--------------------------------------- 162 (281)
-.+.+.++..|+...+. .++..++|.+||+|.+.+..+..
T Consensus 171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 34567788888887776 56789999999999999887652
Q ss_pred -----CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 163 -----GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 163 -----~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
..+++|+|+++.+++.|+.|+..++ .+++.++|+.+++..+ ..+.+|+|++||||..
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----------~~~~~d~IvtNPPYg~ 315 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----------PKGPTGLVISNPPYGE 315 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----------ccCCCCEEEECCCCcC
Confidence 1269999999999999999998764 5899999999876431 1256999999999954
No 161
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.82 E-value=2.4e-08 Score=85.82 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC--------------CCCeEE
Q 023482 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--------------IDQLKV 191 (281)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~--------------~~~v~~ 191 (281)
++.+.+.+-. +...++.+||..|||.|.-...|+++|.+|+|+|+++.+++.+.+.... .++|++
T Consensus 23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 4444444444 6666778999999999999999999999999999999999998443221 137899
Q ss_pred EEcCccccccccchhhHHHhhcCCCCccEEEEc-----CCCcccH---HHHHHhccCCCCcceEE
Q 023482 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-----IPFNIST---DVIKQLLPMGDIFSEVV 248 (281)
Q Consensus 192 ~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n-----~P~~~~~---~~~~~ll~~~~~~~~~~ 248 (281)
.+||+.+++..+ .+.||+|+-- +|-.... ..+.+++++++.+-.+.
T Consensus 102 ~~gDfF~l~~~~-----------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 102 YCGDFFELPPED-----------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp EES-TTTGGGSC-----------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred EEcccccCChhh-----------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 999999987432 2578888864 3323222 34457888887743333
No 162
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.82 E-value=3.2e-08 Score=87.71 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHH--HhcCCC-CeEEEEcCccccccccch
Q 023482 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRE--RFASID-QLKVLQEDFVKCHIRSHM 205 (281)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~--~~~~~~-~v~~~~gD~~~~~~~d~~ 205 (281)
-+++...+..-.|++|||||||.|+++..|+..|+ .|+|+|.+...+.+.+. ++-... .+.++...++++|.
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~---- 179 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN---- 179 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc----
Confidence 34566666666899999999999999999999977 79999999988876432 333222 33444345566652
Q ss_pred hhHHHhhcCCCCccEEEE-cCCCcccHHHH-----HHhccCCCCcceEEEeehhhH
Q 023482 206 LSLFERRKSSSGFAKVVA-NIPFNISTDVI-----KQLLPMGDIFSEVVLLLQEET 255 (281)
Q Consensus 206 ~d~v~~~~~~~~~d~Vi~-n~P~~~~~~~~-----~~ll~~~~~~~~~~~~~~~~~ 255 (281)
.+.||.||+ ..-||...|+- +..+.+||.+-.-++++.-+.
T Consensus 180 ---------~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~ 226 (315)
T PF08003_consen 180 ---------LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDE 226 (315)
T ss_pred ---------cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCC
Confidence 478999998 46777665543 455566666544444444333
No 163
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.81 E-value=3.9e-08 Score=88.70 Aligned_cols=67 Identities=25% Similarity=0.377 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC-C--CeEEEEcCccc
Q 023482 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI-D--QLKVLQEDFVK 198 (281)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~-~--~v~~~~gD~~~ 198 (281)
...+.+.+. ++.+|||+|||+|..+..+++. +.+|+++|+|++|++.|++++... + ++.++++|+.+
T Consensus 54 ~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 54 ADEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ 126 (301)
T ss_pred HHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence 333444443 5678999999999999999887 479999999999999999887542 2 56778999986
No 164
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.80 E-value=2.1e-08 Score=88.84 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCCccH----HHHHHHHc-------CCEEEEEeCCHHHHHHHHHHhcC-----------------------
Q 023482 140 QEGDIVLEIGPGTGS----LTNVLLNA-------GATVLAIEKDQHMVGLVRERFAS----------------------- 185 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~----~t~~la~~-------~~~v~gvD~s~~~l~~a~~~~~~----------------------- 185 (281)
.++.+|+|+|||+|. +++.+++. +.+|+|+|+|+.|++.|++..-.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345699999999996 45555553 35899999999999999975310
Q ss_pred ------CCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCC-cccH-------HHHHHhccCCCCc
Q 023482 186 ------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF-NIST-------DVIKQLLPMGDIF 244 (281)
Q Consensus 186 ------~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~-~~~~-------~~~~~ll~~~~~~ 244 (281)
..+|+|.++|+.+.+++ .+.||+|++..-+ +... ..+.+.+++||.+
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~------------~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L 238 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPP------------LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYL 238 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCc------------cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEE
Confidence 02689999999887642 3679999994332 2221 2224667788765
No 165
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.80 E-value=8.8e-08 Score=86.54 Aligned_cols=105 Identities=15% Similarity=0.207 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCcccccccc
Q 023482 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS 203 (281)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d 203 (281)
....+++.+...++.+|||||||+|.++..+++. +.+++++|. +.+++.++++.... ++++++.+|+.+.+++
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~- 214 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP- 214 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-
Confidence 4566777777778889999999999999999987 469999998 78999999887754 3799999999875432
Q ss_pred chhhHHHhhcCCCCccEEE-EcCCCcccHH----HH---HHhccCCCCcceEE
Q 023482 204 HMLSLFERRKSSSGFAKVV-ANIPFNISTD----VI---KQLLPMGDIFSEVV 248 (281)
Q Consensus 204 ~~~d~v~~~~~~~~~d~Vi-~n~P~~~~~~----~~---~~ll~~~~~~~~~~ 248 (281)
.+|+|+ ++..+.+..+ ++ .+.+++||.+-..-
T Consensus 215 -------------~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 215 -------------EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred -------------CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 247665 4544444433 23 35667777764443
No 166
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.77 E-value=4.5e-08 Score=90.94 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=79.3
Q ss_pred ccCccccCCHHHHHHHHHHhcCC-CCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCCC--CeEEE
Q 023482 118 SLGQHYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID--QLKVL 192 (281)
Q Consensus 118 ~~g~~~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~ 192 (281)
.|+-+....+++...+++.+... .+.+|||++||+|..++.++.. + .+|+++|+++.+++.+++|++.++ ++++.
T Consensus 33 Fyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~ 112 (382)
T PRK04338 33 FYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVF 112 (382)
T ss_pred eeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEE
Confidence 44444555566666666666533 3468999999999999999876 3 399999999999999999987553 67899
Q ss_pred EcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHHH
Q 023482 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236 (281)
Q Consensus 193 ~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ 236 (281)
++|+.++.. . ...||+|+.||| ....+++..
T Consensus 113 ~~Da~~~l~-----------~-~~~fD~V~lDP~-Gs~~~~l~~ 143 (382)
T PRK04338 113 NKDANALLH-----------E-ERKFDVVDIDPF-GSPAPFLDS 143 (382)
T ss_pred hhhHHHHHh-----------h-cCCCCEEEECCC-CCcHHHHHH
Confidence 999876421 1 256999999986 655666554
No 167
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.77 E-value=3.2e-08 Score=88.50 Aligned_cols=91 Identities=13% Similarity=0.294 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccccccc
Q 023482 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (281)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d 203 (281)
|-+.+.+++.+.+.++..++|.+||.|..+..+++.. ++|+|+|.|+.+++.|++++...++++++++|+.++...
T Consensus 5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~- 83 (296)
T PRK00050 5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV- 83 (296)
T ss_pred cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH-
Confidence 4467788888888888999999999999999999872 699999999999999998876545899999999886421
Q ss_pred chhhHHHhhcC-CCCccEEEEcCC
Q 023482 204 HMLSLFERRKS-SSGFAKVVANIP 226 (281)
Q Consensus 204 ~~~d~v~~~~~-~~~~d~Vi~n~P 226 (281)
+ .. ...+|.|+.++=
T Consensus 84 -----l---~~~~~~vDgIl~DLG 99 (296)
T PRK00050 84 -----L---AEGLGKVDGILLDLG 99 (296)
T ss_pred -----H---HcCCCccCEEEECCC
Confidence 1 11 126888887653
No 168
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.76 E-value=7.2e-08 Score=70.79 Aligned_cols=75 Identities=27% Similarity=0.448 Sum_probs=60.6
Q ss_pred EEEEEcCCccHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482 144 IVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~la~-~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~ 220 (281)
+|+|+|||.|..+..++. ...+++++|+++..+..+++..... .+++++.+|+.+... ...+.+|+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~ 69 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-----------EADESFDV 69 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-----------ccCCceEE
Confidence 489999999999999988 4679999999999999988443322 388999999987652 12367999
Q ss_pred EEEcCCCcc
Q 023482 221 VVANIPFNI 229 (281)
Q Consensus 221 Vi~n~P~~~ 229 (281)
|+.+.+++.
T Consensus 70 i~~~~~~~~ 78 (107)
T cd02440 70 IISDPPLHH 78 (107)
T ss_pred EEEccceee
Confidence 999999875
No 169
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.76 E-value=5.2e-08 Score=81.80 Aligned_cols=75 Identities=19% Similarity=0.403 Sum_probs=53.4
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcC
Q 023482 138 AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 138 ~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.+.++++|||+|||+|.++..++.. ..+|+++|+++.+ ...+++++++|+.+.+..+ .+.....
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~----~l~~~~~ 95 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLN----KIRERVG 95 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHH----HHHHHhC
Confidence 4457889999999999999988876 3479999999865 1247889999987643211 1100023
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+.||+|+++.
T Consensus 96 ~~~~D~V~~~~ 106 (188)
T TIGR00438 96 DDKVDVVMSDA 106 (188)
T ss_pred CCCccEEEcCC
Confidence 45799999974
No 170
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=3e-08 Score=89.98 Aligned_cols=112 Identities=19% Similarity=0.269 Sum_probs=83.6
Q ss_pred ccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (281)
Q Consensus 121 ~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~ 196 (281)
..|+.+....++..-.-...+|.+|+|..+|.|++++.+|..+. +|+++|+||.+++.+++|+..++ .+..++||+
T Consensus 168 Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~ 247 (341)
T COG2520 168 KVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA 247 (341)
T ss_pred HeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccH
Confidence 44555555544433222334689999999999999999999976 59999999999999999998764 589999999
Q ss_pred cccccccchhhHHHhhcCCCCccEEEEcCCCc--ccHHHHHHhccCCCCc
Q 023482 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFN--ISTDVIKQLLPMGDIF 244 (281)
Q Consensus 197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~--~~~~~~~~ll~~~~~~ 244 (281)
.++... .+.+|.|+.|+|.. ...+....+++.++.+
T Consensus 248 rev~~~------------~~~aDrIim~~p~~a~~fl~~A~~~~k~~g~i 285 (341)
T COG2520 248 REVAPE------------LGVADRIIMGLPKSAHEFLPLALELLKDGGII 285 (341)
T ss_pred HHhhhc------------cccCCEEEeCCCCcchhhHHHHHHHhhcCcEE
Confidence 998632 26799999999873 2334444555555543
No 171
>PLN02366 spermidine synthase
Probab=98.75 E-value=9.6e-08 Score=86.23 Aligned_cols=95 Identities=13% Similarity=0.187 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHh
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER 211 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~ 211 (281)
..+++||+||||.|.++..+++. ..+|+.||+|+.+++.|++.+.. .++++++.+|+.+.--.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~--------- 160 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN--------- 160 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh---------
Confidence 45789999999999999999987 35899999999999999998753 24899999998764210
Q ss_pred hcCCCCccEEEEcCCCc--cc--------HHHHHHhccCCCCc
Q 023482 212 RKSSSGFAKVVANIPFN--IS--------TDVIKQLLPMGDIF 244 (281)
Q Consensus 212 ~~~~~~~d~Vi~n~P~~--~~--------~~~~~~ll~~~~~~ 244 (281)
...+.||+||.+.+-. .. -..+++.|+++|.+
T Consensus 161 -~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvl 202 (308)
T PLN02366 161 -APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVV 202 (308)
T ss_pred -ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEE
Confidence 1235799999975331 11 12345777888876
No 172
>PRK01581 speE spermidine synthase; Validated
Probab=98.73 E-value=5.9e-08 Score=88.64 Aligned_cols=95 Identities=20% Similarity=0.202 Sum_probs=71.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHh--c-------CCCCeEEEEcCccccccccchhh
Q 023482 139 VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERF--A-------SIDQLKVLQEDFVKCHIRSHMLS 207 (281)
Q Consensus 139 ~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~--~-------~~~~v~~~~gD~~~~~~~d~~~d 207 (281)
...+++||+||||+|..+..+++.. .+|++||+|+++++.|+... . ..++++++.+|+.++-.
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~------ 221 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS------ 221 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH------
Confidence 3456799999999999999888863 59999999999999999621 1 12499999999987421
Q ss_pred HHHhhcCCCCccEEEEcCCCccc-----------HHHHHHhccCCCCc
Q 023482 208 LFERRKSSSGFAKVVANIPFNIS-----------TDVIKQLLPMGDIF 244 (281)
Q Consensus 208 ~v~~~~~~~~~d~Vi~n~P~~~~-----------~~~~~~ll~~~~~~ 244 (281)
...+.||+||.++|-... -..+.+.|+++|.+
T Consensus 222 -----~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~ 264 (374)
T PRK01581 222 -----SPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAF 264 (374)
T ss_pred -----hcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEE
Confidence 234679999999754211 13445778888875
No 173
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=5.2e-08 Score=91.27 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=87.7
Q ss_pred CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEE
Q 023482 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKV 191 (281)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~ 191 (281)
.+.+.|..|-..-.-+...+-+++++..++.++|+.||||.+++.+++...+|+|||+++.+++.|+.+...++ |.+|
T Consensus 356 Sp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~F 435 (534)
T KOG2187|consen 356 SPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATF 435 (534)
T ss_pred CCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceee
Confidence 34444544444445566777788888889999999999999999999998899999999999999999988776 9999
Q ss_pred EEcCccccccccchhhHHHhhcCCCCcc-EEEEcCCCcccH-HHHHHhcc
Q 023482 192 LQEDFVKCHIRSHMLSLFERRKSSSGFA-KVVANIPFNIST-DVIKQLLP 239 (281)
Q Consensus 192 ~~gD~~~~~~~d~~~d~v~~~~~~~~~d-~Vi~n~P~~~~~-~~~~~ll~ 239 (281)
++|-++++--.. +. ...+.-+ ++|.+||..... .+++.++.
T Consensus 436 i~gqaE~~~~sl-----~~--~~~~~~~~v~iiDPpR~Glh~~~ik~l~~ 478 (534)
T KOG2187|consen 436 IVGQAEDLFPSL-----LT--PCCDSETLVAIIDPPRKGLHMKVIKALRA 478 (534)
T ss_pred eecchhhccchh-----cc--cCCCCCceEEEECCCcccccHHHHHHHHh
Confidence 999777753211 00 1112333 788899985444 45555554
No 174
>PRK03612 spermidine synthase; Provisional
Probab=98.71 E-value=6e-08 Score=93.80 Aligned_cols=95 Identities=19% Similarity=0.277 Sum_probs=72.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH--hc-------CCCCeEEEEcCccccccccchhhH
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER--FA-------SIDQLKVLQEDFVKCHIRSHMLSL 208 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~--~~-------~~~~v~~~~gD~~~~~~~d~~~d~ 208 (281)
.++++|||||||+|..+..+++.. .+|++||+|+++++.++++ +. ..++++++.+|+.+.-.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~------- 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR------- 368 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH-------
Confidence 456799999999999999998873 5999999999999999984 22 12489999999987421
Q ss_pred HHhhcCCCCccEEEEcCCCcccH-----------HHHHHhccCCCCcc
Q 023482 209 FERRKSSSGFAKVVANIPFNIST-----------DVIKQLLPMGDIFS 245 (281)
Q Consensus 209 v~~~~~~~~~d~Vi~n~P~~~~~-----------~~~~~ll~~~~~~~ 245 (281)
...++||+|++|+|..... ..+++.++++|.+.
T Consensus 369 ----~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv 412 (521)
T PRK03612 369 ----KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLV 412 (521)
T ss_pred ----hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEE
Confidence 2236899999998754321 24457778887663
No 175
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.70 E-value=9.9e-08 Score=84.79 Aligned_cols=95 Identities=18% Similarity=0.294 Sum_probs=70.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHh
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER 211 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~ 211 (281)
..+++|||||||+|.++..+++.. .+++++|+++++++.+++.+.. .++++++.+|+.+.--
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~---------- 140 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA---------- 140 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH----------
Confidence 345699999999999999888773 5899999999999999987643 1378888888765311
Q ss_pred hcCCCCccEEEEcCCCcccH----------HHHHHhccCCCCcc
Q 023482 212 RKSSSGFAKVVANIPFNIST----------DVIKQLLPMGDIFS 245 (281)
Q Consensus 212 ~~~~~~~d~Vi~n~P~~~~~----------~~~~~ll~~~~~~~ 245 (281)
...+.||+||.+++..... ..+.++++++|.+.
T Consensus 141 -~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv 183 (270)
T TIGR00417 141 -DTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFV 183 (270)
T ss_pred -hCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEE
Confidence 1236899999987632211 24457778887663
No 176
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.68 E-value=1.9e-07 Score=80.66 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=66.7
Q ss_pred HHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeE-EEEcCccccccccchh
Q 023482 130 NDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLK-VLQEDFVKCHIRSHML 206 (281)
Q Consensus 130 ~~~l~~~l~~-~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~-~~~gD~~~~~~~d~~~ 206 (281)
...+++...+ .++.+|||+|||||.++..+++.|+ +|+|+|+++.++.... ..+.++. +...|+..+..++...
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l---~~~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKL---RQDERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH---hcCCCeeEeecCCcccCCHhHcCC
Confidence 4445555544 3677999999999999999999965 8999999998887622 2222332 3344555443332211
Q ss_pred hHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEeehhhH
Q 023482 207 SLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEET 255 (281)
Q Consensus 207 d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 255 (281)
| ...+|++|...-+ .-+-+..++++ + .++.+++.++
T Consensus 140 d-------~~~~DvsfiS~~~--~l~~i~~~l~~-~---~~~~L~KPqF 175 (228)
T TIGR00478 140 D-------FATFDVSFISLIS--ILPELDLLLNP-N---DLTLLFKPQF 175 (228)
T ss_pred C-------ceeeeEEEeehHh--HHHHHHHHhCc-C---eEEEEcChHh
Confidence 1 2467877776543 23445566655 2 3444444444
No 177
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.64 E-value=3.4e-08 Score=83.90 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=84.9
Q ss_pred HHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcCccccccccchhhHH
Q 023482 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLF 209 (281)
Q Consensus 135 ~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~----~~v~~~~gD~~~~~~~d~~~d~v 209 (281)
+...+..+.+|||.+.|-||.++..+++|+ +|+.||.|+..++.|+.|-=.. .+++++.||+.++--.
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~------- 200 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD------- 200 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-------
Confidence 344566799999999999999999999998 9999999999999998663111 2789999999875211
Q ss_pred HhhcCCCCccEEEEcCCCcccH---------HHHHHhccCCCCcce---------EEEeehhhHHHHhc
Q 023482 210 ERRKSSSGFAKVVANIPFNIST---------DVIKQLLPMGDIFSE---------VVLLLQEETALRLV 260 (281)
Q Consensus 210 ~~~~~~~~~d~Vi~n~P~~~~~---------~~~~~ll~~~~~~~~---------~~~~~~~~~a~rl~ 260 (281)
..+.+||+||.+||..... ..+.++|++||.+-. --.-++++++.||.
T Consensus 201 ---~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr 266 (287)
T COG2521 201 ---FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLR 266 (287)
T ss_pred ---CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHH
Confidence 3346799999999964322 334588888876521 12235566666665
No 178
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=8.3e-08 Score=80.19 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=67.9
Q ss_pred CEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC--CCeE-EEEcCccccccccchhhHHHhhcCCCCc
Q 023482 143 DIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI--DQLK-VLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~--~~v~-~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
..|||+|||||..-...--. +..|+++|.++.|-+.|.+.+.+. .++. |++++.++++. ...+++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~-----------l~d~s~ 146 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ-----------LADGSY 146 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc-----------cccCCe
Confidence 36899999999876655433 779999999999999998887655 3777 99999999983 234778
Q ss_pred cEEEEcCCCc---c---cHHHHHHhccCCCCc
Q 023482 219 AKVVANIPFN---I---STDVIKQLLPMGDIF 244 (281)
Q Consensus 219 d~Vi~n~P~~---~---~~~~~~~ll~~~~~~ 244 (281)
|.||..+-.= . .-..+.++++++|.+
T Consensus 147 DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~i 178 (252)
T KOG4300|consen 147 DTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRI 178 (252)
T ss_pred eeEEEEEEEeccCCHHHHHHHHHHhcCCCcEE
Confidence 8888754331 1 113346888888864
No 179
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.64 E-value=9.8e-08 Score=80.73 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=69.8
Q ss_pred CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
...+||||||.|.++..+|.. +..++|+|++...+..+..+.... .|+.++++|+..+-. . ...+++
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~------~---~~~~~~ 88 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLR------R---LFPPGS 88 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHH------H---HSTTTS
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHh------h---cccCCc
Confidence 348999999999999999987 679999999999999998777643 599999999987311 1 134578
Q ss_pred ccEEEEcCCCcc-----------cH---HHHHHhccCCCCcceEEE
Q 023482 218 FAKVVANIPFNI-----------ST---DVIKQLLPMGDIFSEVVL 249 (281)
Q Consensus 218 ~d~Vi~n~P~~~-----------~~---~~~~~ll~~~~~~~~~~~ 249 (281)
.+.|+.|.|=-| .. ..+.++|++||.+...+-
T Consensus 89 v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 89 VDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp EEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred hheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 999999864211 22 344577888887644443
No 180
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.62 E-value=1.4e-07 Score=84.89 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhc
Q 023482 138 AVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 138 ~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
.+..++.|||+|||||.+++..|+.|+ +|+|||.+.-+ +.|++.+..++ .|+++.|.++++.++
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP----------- 124 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP----------- 124 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC-----------
Confidence 345789999999999999999999976 99999998755 88888887664 589999999998542
Q ss_pred CCCCccEEEEc
Q 023482 214 SSSGFAKVVAN 224 (281)
Q Consensus 214 ~~~~~d~Vi~n 224 (281)
..+.|+||+-
T Consensus 125 -~eKVDiIvSE 134 (346)
T KOG1499|consen 125 -VEKVDIIVSE 134 (346)
T ss_pred -ccceeEEeeh
Confidence 3778999984
No 181
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.62 E-value=9.7e-08 Score=88.38 Aligned_cols=112 Identities=20% Similarity=0.263 Sum_probs=83.2
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~ 197 (281)
|+.++......+.... .|++||++.|=||.++...|..|+ +||+||+|...++.|++|++-++ ++.++++|+.
T Consensus 201 fFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 201 FFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred eeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence 4445555444444433 389999999999999999999988 99999999999999999998664 6899999997
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCcc-cH--------------HHHHHhccCCCCc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-ST--------------DVIKQLLPMGDIF 244 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~-~~--------------~~~~~ll~~~~~~ 244 (281)
++--.. -..+..||+||.+||=.. .. ....+++.++|.+
T Consensus 279 ~~l~~~--------~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l 332 (393)
T COG1092 279 KWLRKA--------ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTL 332 (393)
T ss_pred HHHHHH--------HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEE
Confidence 752110 034568999999998421 11 2224777888766
No 182
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.1e-07 Score=75.67 Aligned_cols=112 Identities=18% Similarity=0.298 Sum_probs=86.2
Q ss_pred ccccCCHHHHHHHHHHhc--CCCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCC--------
Q 023482 121 QHYMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI-------- 186 (281)
Q Consensus 121 ~~~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~-------- 186 (281)
...+.-+.+...+++.|. +.+|-+.||+|+|+|+++..++.. |..++|||..++.++.+++++...
T Consensus 60 n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~ 139 (237)
T KOG1661|consen 60 NLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSS 139 (237)
T ss_pred ceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhh
Confidence 335666888888888887 889999999999999999988864 445699999999999999987642
Q ss_pred ----CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCC-cccHHHHHHhccCCCCc
Q 023482 187 ----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF-NISTDVIKQLLPMGDIF 244 (281)
Q Consensus 187 ----~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~-~~~~~~~~~ll~~~~~~ 244 (281)
+++.++.||....-. +..+||.|....-- ....+.+..|++.|+.+
T Consensus 140 ~~~~~~l~ivvGDgr~g~~------------e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 140 KLKRGELSIVVGDGRKGYA------------EQAPYDAIHVGAAASELPQELLDQLKPGGRLL 190 (237)
T ss_pred hhccCceEEEeCCccccCC------------ccCCcceEEEccCccccHHHHHHhhccCCeEE
Confidence 378999999988753 34678888876433 44556667776665543
No 183
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.62 E-value=2.9e-07 Score=79.44 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=77.4
Q ss_pred CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
...+||||||.|.++..+|+. ...++|||+....+..|.+.+.+.+ |+.++++|+.++-. .+ ..+++
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~------~~---~~~~s 119 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLD------YL---IPDGS 119 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH------hc---CCCCC
Confidence 368999999999999999998 4689999999999999988887653 99999999988531 11 34458
Q ss_pred ccEEEEcCCCcccH--------------HHHHHhccCCCCcceEEEe
Q 023482 218 FAKVVANIPFNIST--------------DVIKQLLPMGDIFSEVVLL 250 (281)
Q Consensus 218 ~d~Vi~n~P~~~~~--------------~~~~~ll~~~~~~~~~~~~ 250 (281)
.|.|+.|.|=-|.. ..+.+.|+++|.+...+-.
T Consensus 120 l~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 120 LDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred eeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 99999986532221 4445888888888666554
No 184
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.60 E-value=1.7e-07 Score=83.49 Aligned_cols=84 Identities=23% Similarity=0.340 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccc
Q 023482 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH 204 (281)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~ 204 (281)
..+.+++.-.-..++.|||+|||+|.++...++.|+ +|++||.+ +|.+.|++.++.+ ++|.++.|.++++.++
T Consensus 165 Y~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-- 241 (517)
T KOG1500|consen 165 YQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-- 241 (517)
T ss_pred HHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc--
Confidence 344455554555788999999999999999999976 99999987 5889999888765 3899999999998654
Q ss_pred hhhHHHhhcCCCCccEEEEcCC
Q 023482 205 MLSLFERRKSSSGFAKVVANIP 226 (281)
Q Consensus 205 ~~d~v~~~~~~~~~d~Vi~n~P 226 (281)
.+.|+||+.|.
T Consensus 242 -----------Ek~DviISEPM 252 (517)
T KOG1500|consen 242 -----------EKVDVIISEPM 252 (517)
T ss_pred -----------hhccEEEeccc
Confidence 67899999763
No 185
>PRK10742 putative methyltransferase; Provisional
Probab=98.58 E-value=2.9e-07 Score=79.85 Aligned_cols=88 Identities=17% Similarity=0.229 Sum_probs=72.0
Q ss_pred HHHHHHhcCCCCC--EEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-----------CCeEEEEcCcc
Q 023482 131 DQLAAAAAVQEGD--IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------DQLKVLQEDFV 197 (281)
Q Consensus 131 ~~l~~~l~~~~~~--~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-----------~~v~~~~gD~~ 197 (281)
+.+++.++++++. +|||+-+|+|..+..++..|++|+++|.++......+.++... .+++++++|..
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 4567777777777 9999999999999999999999999999999999888777652 36888899987
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
++-- .....||+|+.+|||..
T Consensus 156 ~~L~-----------~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 156 TALT-----------DITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHh-----------hCCCCCcEEEECCCCCC
Confidence 6521 12347999999999954
No 186
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.53 E-value=5e-07 Score=80.50 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=65.5
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~ 197 (281)
|.-+++...++.+.. .+++|||+.|=||.++...+..|+ +|+.||.|+.+++.+++|+.-++ +++++.+|+.
T Consensus 108 FlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf 184 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF 184 (286)
T ss_dssp -GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred cHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence 444444444444432 578999999999999999888876 89999999999999999987553 7899999987
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCC
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~ 227 (281)
+.- ..+...+.||+||.+||=
T Consensus 185 ~~l---------~~~~~~~~fD~IIlDPPs 205 (286)
T PF10672_consen 185 KFL---------KRLKKGGRFDLIILDPPS 205 (286)
T ss_dssp HHH---------HHHHHTT-EEEEEE--SS
T ss_pred HHH---------HHHhcCCCCCEEEECCCC
Confidence 631 111345689999999984
No 187
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.47 E-value=6.7e-07 Score=86.20 Aligned_cols=100 Identities=12% Similarity=0.046 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+..+||||||.|.++..+|.. ...++|+|++...+..+....... .|+.++++|+..+.. . ....
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~------~----~~~~ 416 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILN------D----LPNN 416 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH------h----cCcc
Confidence 5678999999999999999997 569999999999998887776544 499999988754321 1 2346
Q ss_pred CccEEEEcCCCcccH--------------HHHHHhccCCCCcceEEEe
Q 023482 217 GFAKVVANIPFNIST--------------DVIKQLLPMGDIFSEVVLL 250 (281)
Q Consensus 217 ~~d~Vi~n~P~~~~~--------------~~~~~ll~~~~~~~~~~~~ 250 (281)
++|.|+.|.|=-|.. ..+.+++++||.+...+-.
T Consensus 417 sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 417 SLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred cccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 789999986533321 3456888888887655543
No 188
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=2.8e-06 Score=73.95 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccccccc
Q 023482 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS 203 (281)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d 203 (281)
++.++..+.+.+|.+|+|-|+|+|.++.++++.. ++++.+|+.+...+.|++.+++.+ |+++.+-|+....|..
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 5678888999999999999999999999999873 599999999999999999998763 9999999998876542
Q ss_pred chhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 204 HMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
....+|+|+.++|--|
T Consensus 174 ----------ks~~aDaVFLDlPaPw 189 (314)
T KOG2915|consen 174 ----------KSLKADAVFLDLPAPW 189 (314)
T ss_pred ----------cccccceEEEcCCChh
Confidence 2467899999987544
No 189
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.39 E-value=3.8e-06 Score=69.66 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=59.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEcCccccccccchhhHHHh
Q 023482 139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCHIRSHMLSLFER 211 (281)
Q Consensus 139 ~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-----~~v~~~~gD~~~~~~~d~~~d~v~~ 211 (281)
...+.+|||+|||+|..++.++.. ..+|+..|.++ .++.++.|++.+ +++++...|..+-. ..+.
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~----~~~~--- 114 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDEL----DSDL--- 114 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-H----HHHH---
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcc----cccc---
Confidence 447789999999999999999998 56999999999 999999998764 26777777665411 0111
Q ss_pred hcCCCCccEEEE-cCCCccc--H---HHHHHhccCCCC
Q 023482 212 RKSSSGFAKVVA-NIPFNIS--T---DVIKQLLPMGDI 243 (281)
Q Consensus 212 ~~~~~~~d~Vi~-n~P~~~~--~---~~~~~ll~~~~~ 243 (281)
.....||+|++ +.-|... . ..+.+++.+++.
T Consensus 115 -~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 115 -LEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp -HS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred -cccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence 23467999997 4555322 2 344577777766
No 190
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.39 E-value=2.3e-06 Score=81.14 Aligned_cols=90 Identities=24% Similarity=0.429 Sum_probs=60.9
Q ss_pred CCEEEEEcCCccHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhh
Q 023482 142 GDIVLEIGPGTGSLTNVLLNAG------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR 212 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~~------~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~ 212 (281)
+..|+|||||+|.+....++.+ .+|+|||.++.++..+++.+..+ ++|+++++|+.++..+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---------- 256 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---------- 256 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----------
Confidence 5689999999999987776653 49999999999887776653322 4999999999998643
Q ss_pred cCCCCccEEEEcC----CCcccHH-HH---HHhccCCCCc
Q 023482 213 KSSSGFAKVVANI----PFNISTD-VI---KQLLPMGDIF 244 (281)
Q Consensus 213 ~~~~~~d~Vi~n~----P~~~~~~-~~---~~ll~~~~~~ 244 (281)
.+.|+|||-+ -.+...+ .+ .++++++|.+
T Consensus 257 ---ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~ 293 (448)
T PF05185_consen 257 ---EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIM 293 (448)
T ss_dssp ---S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEE
T ss_pred ---CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEE
Confidence 5899999843 2343333 33 2555555543
No 191
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.38 E-value=2.7e-07 Score=78.31 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=75.9
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccccccc
Q 023482 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (281)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d 203 (281)
+.-|..+..++..+...+-.++||+|||||..+..+.....+++|||+|.+|++.|.++-- -=++.++|+..+- ++
T Consensus 108 Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~---YD~L~~Aea~~Fl-~~ 183 (287)
T COG4976 108 YSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL---YDTLYVAEAVLFL-ED 183 (287)
T ss_pred CccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc---hHHHHHHHHHHHh-hh
Confidence 4456777888888877667899999999999999999988899999999999999986521 1124444444321 00
Q ss_pred chhhHHHhhcCCCCccEEEEc--CCCcccH----HHHHHhccCCCCcce
Q 023482 204 HMLSLFERRKSSSGFAKVVAN--IPFNIST----DVIKQLLPMGDIFSE 246 (281)
Q Consensus 204 ~~~d~v~~~~~~~~~d~Vi~n--~P~~~~~----~~~~~ll~~~~~~~~ 246 (281)
.....||+|++. +||-..- .....++.++|.|.-
T Consensus 184 ---------~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaF 223 (287)
T COG4976 184 ---------LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAF 223 (287)
T ss_pred ---------ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEE
Confidence 345678888874 5663222 223466777776643
No 192
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.36 E-value=5e-07 Score=76.21 Aligned_cols=103 Identities=15% Similarity=0.212 Sum_probs=78.2
Q ss_pred ccCCHHHHHHHHHHhcCC-CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccc
Q 023482 123 YMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK 198 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~ 198 (281)
..++..+...+....... ....|+|..||.|.-++..+.++..|++||+||.-+..|+.|++-+| +|+|++||+.+
T Consensus 75 svTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 75 SVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred EeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 445555665555544322 55689999999999999999999999999999999999999998764 99999999987
Q ss_pred cccccchhhHHHhhcCCCCccEEEEcCCCcccHHH
Q 023482 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233 (281)
Q Consensus 199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~ 233 (281)
+--. -. ......|.|+..||+..+.-.
T Consensus 155 ~~~~-lq-------~~K~~~~~vf~sppwggp~y~ 181 (263)
T KOG2730|consen 155 LASK-LK-------ADKIKYDCVFLSPPWGGPSYL 181 (263)
T ss_pred HHHH-Hh-------hhhheeeeeecCCCCCCcchh
Confidence 5211 00 122347899999998766533
No 193
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.35 E-value=2.3e-06 Score=79.24 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=68.0
Q ss_pred CEEEEEcCCccHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 143 DIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.+|||+.||+|..++.++.. + .+|+++|+++.+++.+++|++.++ +++++++|+..+-. .....
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~-----------~~~~~ 114 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR-----------YRNRK 114 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-----------HhCCC
Confidence 58999999999999999987 4 499999999999999999997654 68999999887531 12356
Q ss_pred ccEEEEcCCCcccHHHHHHhc
Q 023482 218 FAKVVANIPFNISTDVIKQLL 238 (281)
Q Consensus 218 ~d~Vi~n~P~~~~~~~~~~ll 238 (281)
||+|+.+| |....+++...+
T Consensus 115 fDvIdlDP-fGs~~~fld~al 134 (374)
T TIGR00308 115 FHVIDIDP-FGTPAPFVDSAI 134 (374)
T ss_pred CCEEEeCC-CCCcHHHHHHHH
Confidence 99999998 666666665443
No 194
>PLN02823 spermine synthase
Probab=98.32 E-value=3.7e-06 Score=76.78 Aligned_cols=93 Identities=23% Similarity=0.354 Sum_probs=70.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHhh
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR 212 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~~ 212 (281)
.+++||.||+|.|..+..+++. ..+|+.||+|+++++.|++.+.. .++++++.+|+.+.--
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~----------- 171 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE----------- 171 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh-----------
Confidence 4679999999999999988886 35899999999999999998853 2489999999987421
Q ss_pred cCCCCccEEEEcCCC--------cccH----H-HHHHhccCCCCc
Q 023482 213 KSSSGFAKVVANIPF--------NIST----D-VIKQLLPMGDIF 244 (281)
Q Consensus 213 ~~~~~~d~Vi~n~P~--------~~~~----~-~~~~ll~~~~~~ 244 (281)
...+.||+||.+.+- +..+ . .+++.|.++|.+
T Consensus 172 ~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvl 216 (336)
T PLN02823 172 KRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIF 216 (336)
T ss_pred hCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEE
Confidence 234679999997421 1111 2 456778888876
No 195
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.32 E-value=9.8e-07 Score=78.98 Aligned_cols=116 Identities=26% Similarity=0.366 Sum_probs=93.3
Q ss_pred HHHHhcCCCCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHH-------H
Q 023482 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVG-------L 178 (281)
Q Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~-------~ 178 (281)
+.++++....+...|. -..+.++.--+.+.....+|+.|+|.--|||.+....|.-|+.|+|.|||-.++. .
T Consensus 174 ~li~~y~LK~R~yiGn-TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~s 252 (421)
T KOG2671|consen 174 ELIEKYDLKKRCYIGN-TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDES 252 (421)
T ss_pred hHhhhcccccccccCC-cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcc
Confidence 3455666776666666 6778888888888888999999999999999999999999999999999988887 2
Q ss_pred HHHHhcCCC----CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHH
Q 023482 179 VRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233 (281)
Q Consensus 179 a~~~~~~~~----~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~ 233 (281)
.+.|++.++ -+.++.+|..+-++ +....||.||++|||......
T Consensus 253 i~aNFkQYg~~~~fldvl~~D~sn~~~-----------rsn~~fDaIvcDPPYGVRe~~ 300 (421)
T KOG2671|consen 253 IKANFKQYGSSSQFLDVLTADFSNPPL-----------RSNLKFDAIVCDPPYGVREGA 300 (421)
T ss_pred hhHhHHHhCCcchhhheeeecccCcch-----------hhcceeeEEEeCCCcchhhhh
Confidence 355666554 46788999988776 345789999999999866544
No 196
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.29 E-value=3.3e-06 Score=81.08 Aligned_cols=107 Identities=13% Similarity=0.182 Sum_probs=83.4
Q ss_pred CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc----C--CEEEEEeCCHHHHHHHHHHhcCCC
Q 023482 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASID 187 (281)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~ 187 (281)
...+..|+ |++++.+.+.|++.+.+.+..+|+|..||+|.+....+.. . ..++|.|+++..+..|+.+.--++
T Consensus 160 ~~~k~~GE-fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg 238 (489)
T COG0286 160 AEGKEAGE-FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG 238 (489)
T ss_pred hcCCCCCc-cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence 33344466 9999999999999999888889999999999987777653 1 569999999999999998875332
Q ss_pred ---CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482 188 ---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (281)
Q Consensus 188 ---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~ 228 (281)
++...++|...-|..+.. .....||+|++||||+
T Consensus 239 i~~~~~i~~~dtl~~~~~~~~-------~~~~~~D~viaNPPf~ 275 (489)
T COG0286 239 IEGDANIRHGDTLSNPKHDDK-------DDKGKFDFVIANPPFS 275 (489)
T ss_pred CCccccccccccccCCccccc-------CCccceeEEEeCCCCC
Confidence 467788887776644210 1336799999999996
No 197
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.28 E-value=1.2e-06 Score=72.16 Aligned_cols=61 Identities=28% Similarity=0.367 Sum_probs=54.5
Q ss_pred CCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccc
Q 023482 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIR 202 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~ 202 (281)
.+.+.|+|+|+|.++...++...+|++||.+|.....|.+|+.-. .|++++.||+.+..|+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe 95 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFE 95 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccccc
Confidence 478999999999999999888779999999999999999996433 4999999999998874
No 198
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.24 E-value=1.7e-06 Score=73.64 Aligned_cols=93 Identities=17% Similarity=0.307 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcC-----------CCCeEEE
Q 023482 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFAS-----------IDQLKVL 192 (281)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~-----------~~~v~~~ 192 (281)
.+.....+++.+++.+++..+|||||.|......+.. ++ +.+|||+.+...+.|+..... ..++++.
T Consensus 27 ~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~ 106 (205)
T PF08123_consen 27 SPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI 106 (205)
T ss_dssp HHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE
T ss_pred CHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee
Confidence 4566778889999999999999999999988877765 54 699999999998877643321 1378899
Q ss_pred EcCccccccccchhhHHHhhcCCCCccEEEEc-CCC
Q 023482 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPF 227 (281)
Q Consensus 193 ~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n-~P~ 227 (281)
+||+.+.++.+ +++ ...|+|+.| .-|
T Consensus 107 ~gdfl~~~~~~---~~~------s~AdvVf~Nn~~F 133 (205)
T PF08123_consen 107 HGDFLDPDFVK---DIW------SDADVVFVNNTCF 133 (205)
T ss_dssp CS-TTTHHHHH---HHG------HC-SEEEE--TTT
T ss_pred ccCccccHhHh---hhh------cCCCEEEEecccc
Confidence 99988765322 111 346888886 444
No 199
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.24 E-value=1.1e-05 Score=72.59 Aligned_cols=97 Identities=11% Similarity=0.357 Sum_probs=76.9
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCcccc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKC 199 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~ 199 (281)
|..-|-+.+.+++.+.+.++..++|.-+|.|..+..+++. .++|+|+|.|+.+++.|++++... ++++++++++.++
T Consensus 2 ~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l 81 (305)
T TIGR00006 2 FFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANF 81 (305)
T ss_pred CCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHH
Confidence 4445667888899998888899999999999999999986 479999999999999999988765 3899999999886
Q ss_pred ccccchhhHHHhhcCCCCccEEEEcCC
Q 023482 200 HIRSHMLSLFERRKSSSGFAKVVANIP 226 (281)
Q Consensus 200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P 226 (281)
.. .+.. .....+|.|+.++=
T Consensus 82 ~~------~l~~-~~~~~vDgIl~DLG 101 (305)
T TIGR00006 82 FE------HLDE-LLVTKIDGILVDLG 101 (305)
T ss_pred HH------HHHh-cCCCcccEEEEecc
Confidence 42 1111 12245788887653
No 200
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.19 E-value=1.2e-05 Score=71.86 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCC-----CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-C---CeEEEEcCcc
Q 023482 129 INDQLAAAAAVQE-----GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-D---QLKVLQEDFV 197 (281)
Q Consensus 129 ~~~~l~~~l~~~~-----~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~---~v~~~~gD~~ 197 (281)
++.++...+.... .-++||||||.-.+=-.|..+ +-+++|.|+|+..++.|++++..+ + +|+++...-.
T Consensus 85 Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~ 164 (299)
T PF05971_consen 85 YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNP 164 (299)
T ss_dssp HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST
T ss_pred HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCc
Confidence 4455555554322 347999999987654444433 779999999999999999999876 2 7888766432
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHH
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~ 235 (281)
.. .|+.+. ...+.||+..+||||+...+...
T Consensus 165 ~~-----i~~~i~--~~~e~~dftmCNPPFy~s~~e~~ 195 (299)
T PF05971_consen 165 DN-----IFDGII--QPNERFDFTMCNPPFYSSQEEAE 195 (299)
T ss_dssp -S-----STTTST--T--S-EEEEEE-----SS-----
T ss_pred cc-----cchhhh--cccceeeEEecCCccccChhhhc
Confidence 21 111111 23468999999999988776543
No 201
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.17 E-value=3.5e-06 Score=72.22 Aligned_cols=87 Identities=10% Similarity=0.155 Sum_probs=57.3
Q ss_pred EEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482 144 IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~ 220 (281)
.++|+|||+|-.++.++..-.+|+|+|+|+.|++.|++..+... ..++...+..++ . -...+.|.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L--~----------g~e~SVDl 103 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL--L----------GGEESVDL 103 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccc--c----------CCCcceee
Confidence 89999999997777778777799999999999999988765321 223333333332 2 12356677
Q ss_pred EEEcCCCcccH-----HHHHHhccCCC
Q 023482 221 VVANIPFNIST-----DVIKQLLPMGD 242 (281)
Q Consensus 221 Vi~n~P~~~~~-----~~~~~ll~~~~ 242 (281)
|++--.+||.. ..+.++|+..|
T Consensus 104 I~~Aqa~HWFdle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 104 ITAAQAVHWFDLERFYKEAYRVLRKDG 130 (261)
T ss_pred ehhhhhHHhhchHHHHHHHHHHcCCCC
Confidence 77655555443 44456665554
No 202
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.17 E-value=9.6e-06 Score=77.25 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=74.1
Q ss_pred ccCCHHHHHHHHHHh--cCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcC
Q 023482 123 YMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQED 195 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD 195 (281)
|+.+..........+ .+.++.+|||+++|.|.=|..++.. ...|+++|+++..++.+++++++.+ |+.+.+.|
T Consensus 93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D 172 (470)
T PRK11933 93 FYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFD 172 (470)
T ss_pred EEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 455544555555556 6788999999999999999999886 3589999999999999999998775 88999999
Q ss_pred ccccccccchhhHHHhhcCCCCccEEEEcCC
Q 023482 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (281)
Q Consensus 196 ~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P 226 (281)
...+.- .....||.|+.+.|
T Consensus 173 ~~~~~~-----------~~~~~fD~ILvDaP 192 (470)
T PRK11933 173 GRVFGA-----------ALPETFDAILLDAP 192 (470)
T ss_pred hhhhhh-----------hchhhcCeEEEcCC
Confidence 887531 12356999999887
No 203
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.13 E-value=1.1e-05 Score=69.13 Aligned_cols=115 Identities=15% Similarity=0.191 Sum_probs=71.6
Q ss_pred cccCCHHHHHHHHHHhcC-CCC--CEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEE
Q 023482 122 HYMLNSEINDQLAAAAAV-QEG--DIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID-QLKVLQ 193 (281)
Q Consensus 122 ~~~~~~~~~~~l~~~l~~-~~~--~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~ 193 (281)
.|+.++.++..-...+.. ... .+|||||||.|.....+.+. +.+|++.|.++.+++..+++..... ++.-..
T Consensus 49 rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv 128 (264)
T KOG2361|consen 49 RFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFV 128 (264)
T ss_pred cccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccc
Confidence 366677666554444432 222 27999999999999999885 2589999999999999998765433 444444
Q ss_pred cCccccccccchhhHHHhhcCCCCccEEE-----EcCCCcc---cHHHHHHhccCCCCc
Q 023482 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVV-----ANIPFNI---STDVIKQLLPMGDIF 244 (281)
Q Consensus 194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi-----~n~P~~~---~~~~~~~ll~~~~~~ 244 (281)
.|+..-..... ...+++|+|+ +..+-.. .-+.+.+++++||.+
T Consensus 129 ~Dlt~~~~~~~--------~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~l 179 (264)
T KOG2361|consen 129 WDLTSPSLKEP--------PEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSL 179 (264)
T ss_pred eeccchhccCC--------CCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEE
Confidence 44432211000 2234555544 3433322 224556888999876
No 204
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.01 E-value=3e-05 Score=62.04 Aligned_cols=60 Identities=23% Similarity=0.421 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHH-----c-CCEEEEEeCCHHHHHHHHHHhcCC-----CCeEEEEcCcccc
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLN-----A-GATVLAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKC 199 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~-----~-~~~v~gvD~s~~~l~~a~~~~~~~-----~~v~~~~gD~~~~ 199 (281)
.+...|+|+|||-|+++..++. . +.+|+|||.++..++.+..+.... .++++..++..+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE 94 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence 4677999999999999999999 4 679999999999999888776532 2555666655443
No 205
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.95 E-value=7.7e-05 Score=63.67 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=85.0
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~ 196 (281)
....++....+...+....++++||||.=||++++.+|.. +++|+++|+++..++.+....+..+ +|++++|++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 4555666666666667778899999999999999999876 7899999999999999987776554 899999998
Q ss_pred cccccccchhhHHHhhcCCCCccEEEEcC---CCcccHHHHHHhccCCCCc
Q 023482 197 VKCHIRSHMLSLFERRKSSSGFAKVVANI---PFNISTDVIKQLLPMGDIF 244 (281)
Q Consensus 197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~---P~~~~~~~~~~ll~~~~~~ 244 (281)
.+.- ..++.. ...+.||.+|.+. -|...-+-.-+|++.|+.+
T Consensus 135 ~esL-----d~l~~~-~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi 179 (237)
T KOG1663|consen 135 LESL-----DELLAD-GESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVI 179 (237)
T ss_pred hhhH-----HHHHhc-CCCCceeEEEEccchHHHHHHHHHHHhhcccccEE
Confidence 7631 011111 2457899999864 2333334445777888765
No 206
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.95 E-value=7.9e-05 Score=67.59 Aligned_cols=93 Identities=19% Similarity=0.273 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d 219 (281)
.++.++||+||++|.+|..|+++|.+|+|||..+ |- ..+...++|+.+.+|...... ....+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~----~~L~~~~~V~h~~~d~fr~~p------------~~~~vD 272 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA----QSLMDTGQVEHLRADGFKFRP------------PRKNVD 272 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC----HhhhCCCCEEEEeccCcccCC------------CCCCCC
Confidence 4788999999999999999999999999999544 22 233445699999999877642 136789
Q ss_pred EEEEcCCCc--ccHHHHHHhccCCCCcceEEEe
Q 023482 220 KVVANIPFN--ISTDVIKQLLPMGDIFSEVVLL 250 (281)
Q Consensus 220 ~Vi~n~P~~--~~~~~~~~ll~~~~~~~~~~~~ 250 (281)
.++++.--. .....+.+++..+ .-..+++.
T Consensus 273 wvVcDmve~P~rva~lm~~Wl~~g-~cr~aIfn 304 (357)
T PRK11760 273 WLVCDMVEKPARVAELMAQWLVNG-WCREAIFN 304 (357)
T ss_pred EEEEecccCHHHHHHHHHHHHhcC-cccEEEEE
Confidence 999975321 2224555666544 33344433
No 207
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.94 E-value=2.2e-05 Score=62.51 Aligned_cols=55 Identities=16% Similarity=0.281 Sum_probs=47.0
Q ss_pred EEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccc
Q 023482 144 IVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~ 198 (281)
+++|+|||.|.++..++..+ .+|+++|.++.+++.+++++..+ .++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999999874 37999999999999999998754 368888877654
No 208
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.00012 Score=67.48 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=74.4
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF 196 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~ 196 (281)
++.+..........+.+.+|.+|||++++.|.=|..+++. +..|+++|+++.-+...++++.+.+ |+.+++.|.
T Consensus 138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~ 217 (355)
T COG0144 138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA 217 (355)
T ss_pred EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence 4445555555566788999999999999999999888886 3467999999999999999999876 788999998
Q ss_pred cccccccchhhHHHhhcCCCCccEEEEcCC
Q 023482 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (281)
Q Consensus 197 ~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P 226 (281)
..++-.. .....||.|+.+.|
T Consensus 218 ~~~~~~~---------~~~~~fD~iLlDaP 238 (355)
T COG0144 218 RRLAELL---------PGGEKFDRILLDAP 238 (355)
T ss_pred ccccccc---------cccCcCcEEEECCC
Confidence 7664211 11235899998877
No 209
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.84 E-value=6.7e-05 Score=68.49 Aligned_cols=97 Identities=21% Similarity=0.324 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcC---------C--C-CeEEEEcCccccccccchhh
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS---------I--D-QLKVLQEDFVKCHIRSHMLS 207 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~---------~--~-~v~~~~gD~~~~~~~d~~~d 207 (281)
++.+|||+|||-|.-+.-.... -.+++|+|++...++.|+++... . . ...++.+|.....+.+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~--- 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK--- 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT---
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh---
Confidence 6789999999977755555554 56999999999999999998821 1 1 45678888775432221
Q ss_pred HHHhhcC-CCCccEEEEcC--CCcccHH-----H---HHHhccCCCCc
Q 023482 208 LFERRKS-SSGFAKVVANI--PFNISTD-----V---IKQLLPMGDIF 244 (281)
Q Consensus 208 ~v~~~~~-~~~~d~Vi~n~--P~~~~~~-----~---~~~ll~~~~~~ 244 (281)
+ .. ...||+|-+-. .|...++ + +...|++||.|
T Consensus 139 -~---~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~F 182 (331)
T PF03291_consen 139 -L---PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYF 182 (331)
T ss_dssp -S---SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEE
T ss_pred -c---cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEE
Confidence 0 12 25899888754 3432221 2 23566777776
No 210
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.83 E-value=0.00013 Score=63.49 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=60.4
Q ss_pred HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhH
Q 023482 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL 208 (281)
Q Consensus 131 ~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~ 208 (281)
..+..........+|+|||.|+|.++..+++. +.+++.+|. |..++.+++ .++|+++.||+. -+++
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f-~~~P------ 157 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFF-DPLP------ 157 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TT-TCCS------
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHH-hhhc------
Confidence 34455556666779999999999999999987 679999999 888888888 469999999998 3331
Q ss_pred HHhhcCCCCccEEEEc-CCCcccHHHHH
Q 023482 209 FERRKSSSGFAKVVAN-IPFNISTDVIK 235 (281)
Q Consensus 209 v~~~~~~~~~d~Vi~n-~P~~~~~~~~~ 235 (281)
. +|+++.. .-..|..+...
T Consensus 158 -------~-~D~~~l~~vLh~~~d~~~~ 177 (241)
T PF00891_consen 158 -------V-ADVYLLRHVLHDWSDEDCV 177 (241)
T ss_dssp -------S-ESEEEEESSGGGS-HHHHH
T ss_pred -------c-ccceeeehhhhhcchHHHH
Confidence 3 7877764 44455554433
No 211
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.74 E-value=9.1e-05 Score=61.73 Aligned_cols=87 Identities=21% Similarity=0.340 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccch
Q 023482 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM 205 (281)
Q Consensus 128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~ 205 (281)
.+.+++...-..-.+++|||+|+|+|.-+++.+..|+ .|++.|+++...+.++.|.+.++ ++.+.+.|...-
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~------ 139 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGS------ 139 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCC------
Confidence 3455666665666889999999999999999999876 89999999999998888888777 889999988762
Q ss_pred hhHHHhhcCCCCccEEEE-cCCCcc
Q 023482 206 LSLFERRKSSSGFAKVVA-NIPFNI 229 (281)
Q Consensus 206 ~d~v~~~~~~~~~d~Vi~-n~P~~~ 229 (281)
+..+|+|+. ++-|+.
T Consensus 140 ---------~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 140 ---------PPAFDLLLAGDLFYNH 155 (218)
T ss_pred ---------CcceeEEEeeceecCc
Confidence 256777775 455543
No 212
>PRK00536 speE spermidine synthase; Provisional
Probab=97.73 E-value=0.00025 Score=62.53 Aligned_cols=90 Identities=14% Similarity=0.190 Sum_probs=68.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC------CCeEEEEcCccccccccchhhHHHhhc
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~------~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
..+++||=||-|.|..++.+.++..+|+-||+|+++++.+++.++.. ++++++.. +.+ .
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--------------~ 135 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--------------L 135 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--------------c
Confidence 45689999999999999999998669999999999999999966532 37777651 111 2
Q ss_pred CCCCccEEEEcCCCcc-cHHHHHHhccCCCCc
Q 023482 214 SSSGFAKVVANIPFNI-STDVIKQLLPMGDIF 244 (281)
Q Consensus 214 ~~~~~d~Vi~n~P~~~-~~~~~~~ll~~~~~~ 244 (281)
..+.||+||.+..+.. .-..+++.|+++|.+
T Consensus 136 ~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~ 167 (262)
T PRK00536 136 DIKKYDLIICLQEPDIHKIDGLKRMLKEDGVF 167 (262)
T ss_pred cCCcCCEEEEcCCCChHHHHHHHHhcCCCcEE
Confidence 2367999999854432 224567888888876
No 213
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00038 Score=62.11 Aligned_cols=91 Identities=20% Similarity=0.315 Sum_probs=69.6
Q ss_pred CEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCC------CCeEEEEcCccccccccchhhHHHhhcC
Q 023482 143 DIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~------~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
++||-||-|.|..+..+.+.. .+++.||+++..++.+++.+... ++++++.+|+.++-- ..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~-----------~~ 146 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR-----------DC 146 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH-----------hC
Confidence 699999999999999999984 59999999999999999988642 488999999887531 12
Q ss_pred CCCccEEEEcC--CCcc-----cH---HHHHHhccCCCCc
Q 023482 215 SSGFAKVVANI--PFNI-----ST---DVIKQLLPMGDIF 244 (281)
Q Consensus 215 ~~~~d~Vi~n~--P~~~-----~~---~~~~~ll~~~~~~ 244 (281)
...||+||.+. |-.. .. .-+++.|+++|.+
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~ 186 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIF 186 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEE
Confidence 34799999863 3111 11 3445777777766
No 214
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.71 E-value=0.00028 Score=61.55 Aligned_cols=113 Identities=20% Similarity=0.298 Sum_probs=73.7
Q ss_pred cCccccCCHHHHHHHHHHhc-----CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482 119 LGQHYMLNSEINDQLAAAAA-----VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (281)
Q Consensus 119 ~g~~~~~~~~~~~~l~~~l~-----~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~ 193 (281)
.|..|....+-...++..-+ -....++||||+|.|..|..|+..-.+|++.|.|+.|....+++ +.+++.
T Consensus 67 RG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-----g~~vl~ 141 (265)
T PF05219_consen 67 RGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-----GFTVLD 141 (265)
T ss_pred CCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-----CCeEEe
Confidence 35567766666666665441 12456899999999999999999878999999999998777653 444443
Q ss_pred cCccccccccchhhHHHhhcCCCCccEEEE-cC------CCcccHHHHHHhccCCCCcceEEEee
Q 023482 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVA-NI------PFNISTDVIKQLLPMGDIFSEVVLLL 251 (281)
Q Consensus 194 gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~-n~------P~~~~~~~~~~ll~~~~~~~~~~~~~ 251 (281)
.| ++. ..+.+||+|.+ |+ |.....++ ++.++++|.+-.++.+-
T Consensus 142 ~~--~w~------------~~~~~fDvIscLNvLDRc~~P~~LL~~i-~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 142 ID--DWQ------------QTDFKFDVISCLNVLDRCDRPLTLLRDI-RRALKPNGRLILAVVLP 191 (265)
T ss_pred hh--hhh------------ccCCceEEEeehhhhhccCCHHHHHHHH-HHHhCCCCEEEEEEEec
Confidence 33 222 22357888876 32 33333344 34556677766655543
No 215
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.69 E-value=6.6e-05 Score=64.53 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=41.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASI 186 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~ 186 (281)
.+..+|||||-.|.+|..+|+. ++ .|+|+|||+..++.|+++++..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 5678999999999999999997 54 8999999999999999998743
No 216
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.69 E-value=0.00021 Score=64.34 Aligned_cols=94 Identities=13% Similarity=0.288 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCcccccccc
Q 023482 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS 203 (281)
Q Consensus 127 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d 203 (281)
|-+.+.+++.+.+.++..++|.--|.|..+..+++. .++|+|+|.|+.+++.|++++... +++.++++++.++.-
T Consensus 6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~-- 83 (310)
T PF01795_consen 6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE-- 83 (310)
T ss_dssp -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH--
T ss_pred cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH--
Confidence 446778888888888999999999999999999986 579999999999999999988765 499999999988642
Q ss_pred chhhHHHhhc-CCCCccEEEEcCCC
Q 023482 204 HMLSLFERRK-SSSGFAKVVANIPF 227 (281)
Q Consensus 204 ~~~d~v~~~~-~~~~~d~Vi~n~P~ 227 (281)
.+.. . ....+|.|+.++=.
T Consensus 84 ----~l~~-~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 84 ----YLKE-LNGINKVDGILFDLGV 103 (310)
T ss_dssp ----HHHH-TTTTS-EEEEEEE-S-
T ss_pred ----HHHH-ccCCCccCEEEEcccc
Confidence 2221 2 34678999987653
No 217
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.61 E-value=0.00015 Score=61.87 Aligned_cols=91 Identities=13% Similarity=0.214 Sum_probs=65.6
Q ss_pred CCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482 142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~ 220 (281)
-+.++|||||-|++...+...+ .+++-+|.|-.|++.++..-...=.+....+|-+.++|.++++ |.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~------------DL 140 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSV------------DL 140 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccch------------hh
Confidence 4579999999999999998885 4999999999999998865331115667889999999877554 55
Q ss_pred EEEcCCCcccHH------HHHHhccCCCCc
Q 023482 221 VVANIPFNISTD------VIKQLLPMGDIF 244 (281)
Q Consensus 221 Vi~n~P~~~~~~------~~~~ll~~~~~~ 244 (281)
|++.+-.+|..+ -++..+++.+.|
T Consensus 141 iisSlslHW~NdLPg~m~~ck~~lKPDg~F 170 (325)
T KOG2940|consen 141 IISSLSLHWTNDLPGSMIQCKLALKPDGLF 170 (325)
T ss_pred hhhhhhhhhhccCchHHHHHHHhcCCCccc
Confidence 565555544332 234556666655
No 218
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.61 E-value=0.00039 Score=60.95 Aligned_cols=94 Identities=19% Similarity=0.295 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEcCccccccccchhhHHHhh
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR 212 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~------~~~v~~~~gD~~~~~~~d~~~d~v~~~ 212 (281)
.+++||-||-|.|..+..+.+.. .+|+.||+|+..++.|++.+.. .++++++.+|+..+--
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~----------- 144 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK----------- 144 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH-----------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH-----------
Confidence 57899999999999999999874 5999999999999999987652 2489999999977521
Q ss_pred cCCC-CccEEEEcCCC--cc-----cH---HHHHHhccCCCCcc
Q 023482 213 KSSS-GFAKVVANIPF--NI-----ST---DVIKQLLPMGDIFS 245 (281)
Q Consensus 213 ~~~~-~~d~Vi~n~P~--~~-----~~---~~~~~ll~~~~~~~ 245 (281)
.... .||+|+.+.+- .. .. ..+++.|.++|.+.
T Consensus 145 ~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v 188 (246)
T PF01564_consen 145 ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLV 188 (246)
T ss_dssp TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEE
Confidence 2234 79999986542 11 12 34457777776653
No 219
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.61 E-value=0.00024 Score=63.57 Aligned_cols=96 Identities=21% Similarity=0.329 Sum_probs=74.6
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~ 197 (281)
++.+..........+.+.++..|||+++|.|.=|..+++. .+.|++.|+++..+...+.+..+.+ ++.++..|+.
T Consensus 67 ~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~ 146 (283)
T PF01189_consen 67 FYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADAR 146 (283)
T ss_dssp EEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHH
T ss_pred EEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccc
Confidence 4444444444556678889999999999999999999886 3599999999999999999988775 8888888887
Q ss_pred ccccccchhhHHHhhcCCCCccEEEEcCCCc
Q 023482 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (281)
Q Consensus 198 ~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~ 228 (281)
..... .....||.|+.+.|=.
T Consensus 147 ~~~~~----------~~~~~fd~VlvDaPCS 167 (283)
T PF01189_consen 147 KLDPK----------KPESKFDRVLVDAPCS 167 (283)
T ss_dssp HHHHH----------HHTTTEEEEEEECSCC
T ss_pred ccccc----------ccccccchhhcCCCcc
Confidence 76321 1224599999988854
No 220
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.60 E-value=0.00011 Score=59.99 Aligned_cols=69 Identities=10% Similarity=0.145 Sum_probs=50.2
Q ss_pred EEEeCCHHHHHHHHHHhcCC-----CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc------HHHHH
Q 023482 167 LAIEKDQHMVGLVRERFASI-----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS------TDVIK 235 (281)
Q Consensus 167 ~gvD~s~~~l~~a~~~~~~~-----~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~------~~~~~ 235 (281)
+|+|+|++|++.|+++.... .+++++++|+.++|+.+ +.||+|+++.-+++. -..+.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~------------~~fD~v~~~~~l~~~~d~~~~l~ei~ 68 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD------------CEFDAVTMGYGLRNVVDRLRAMKEMY 68 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC------------CCeeEEEecchhhcCCCHHHHHHHHH
Confidence 58999999999998765421 37999999999998654 568888876433321 13446
Q ss_pred HhccCCCCcceE
Q 023482 236 QLLPMGDIFSEV 247 (281)
Q Consensus 236 ~ll~~~~~~~~~ 247 (281)
+++++||.+...
T Consensus 69 rvLkpGG~l~i~ 80 (160)
T PLN02232 69 RVLKPGSRVSIL 80 (160)
T ss_pred HHcCcCeEEEEE
Confidence 888999887444
No 221
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.55 E-value=0.00017 Score=64.39 Aligned_cols=109 Identities=20% Similarity=0.318 Sum_probs=71.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC----C----CeEEEEcCccccc
Q 023482 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----D----QLKVLQEDFVKCH 200 (281)
Q Consensus 130 ~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~----~----~v~~~~gD~~~~~ 200 (281)
++.++-..-.++++.++|+|||-|.-++..-..+. +++|+||.+..+++|+++.... . .+.|+.||-....
T Consensus 106 IKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 106 IKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 33333333345778899999999998877777654 9999999999999999887632 1 5789999976643
Q ss_pred cccchhhHHHhhcCCCCccEEEEc--CCCcccHHH--------HHHhccCCCCc
Q 023482 201 IRSHMLSLFERRKSSSGFAKVVAN--IPFNISTDV--------IKQLLPMGDIF 244 (281)
Q Consensus 201 ~~d~~~d~v~~~~~~~~~d~Vi~n--~P~~~~~~~--------~~~ll~~~~~~ 244 (281)
+. |+++ ....+||+|-+- ..|.+.+.. +.++|++||.|
T Consensus 186 l~----d~~e--~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~F 233 (389)
T KOG1975|consen 186 LM----DLLE--FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVF 233 (389)
T ss_pred HH----Hhcc--CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEE
Confidence 32 2221 122338877664 344333311 12667788766
No 222
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.54 E-value=0.00035 Score=59.48 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=47.9
Q ss_pred EEEEcCCccHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccc
Q 023482 145 VLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC 199 (281)
Q Consensus 145 VLDiGcG~G~~t~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~ 199 (281)
|.||||--|++...|.+.+. +++++|+++.-++.|++++...+ ++++..+|..+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~ 60 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV 60 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc
Confidence 68999999999999999975 89999999999999999998664 899999997763
No 223
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.53 E-value=0.00029 Score=58.97 Aligned_cols=88 Identities=23% Similarity=0.306 Sum_probs=65.4
Q ss_pred EEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482 144 IVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d 219 (281)
+++|||+|.|.=++.++-. ..+++.+|....-+...+.-.... .|++++++++++ + .....||
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~------------~~~~~fd 117 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P------------EYRESFD 117 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T------------TTTT-EE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c------------ccCCCcc
Confidence 8999999999977777654 679999999999888887766544 489999999998 2 2347899
Q ss_pred EEEEc--CCCcccHHHHHHhccCCCCc
Q 023482 220 KVVAN--IPFNISTDVIKQLLPMGDIF 244 (281)
Q Consensus 220 ~Vi~n--~P~~~~~~~~~~ll~~~~~~ 244 (281)
+|++- -|.....+....+++.++.+
T Consensus 118 ~v~aRAv~~l~~l~~~~~~~l~~~G~~ 144 (184)
T PF02527_consen 118 VVTARAVAPLDKLLELARPLLKPGGRL 144 (184)
T ss_dssp EEEEESSSSHHHHHHHHGGGEEEEEEE
T ss_pred EEEeehhcCHHHHHHHHHHhcCCCCEE
Confidence 99985 34445556666777666543
No 224
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.52 E-value=0.00066 Score=58.02 Aligned_cols=90 Identities=19% Similarity=0.261 Sum_probs=70.7
Q ss_pred CCEEEEEcCCccHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~--~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
+++++|||+|.|.=++.+|= ...+|+-+|....-+...+....+.+ |++++++.++++... ..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-------------~~ 134 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE-------------KK 134 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc-------------cc
Confidence 58999999999998888763 35679999999998888887766554 899999999998532 23
Q ss_pred -ccEEEEc--CCCcccHHHHHHhccCCCCc
Q 023482 218 -FAKVVAN--IPFNISTDVIKQLLPMGDIF 244 (281)
Q Consensus 218 -~d~Vi~n--~P~~~~~~~~~~ll~~~~~~ 244 (281)
||+|.+- -+..........+++.++.+
T Consensus 135 ~~D~vtsRAva~L~~l~e~~~pllk~~g~~ 164 (215)
T COG0357 135 QYDVVTSRAVASLNVLLELCLPLLKVGGGF 164 (215)
T ss_pred cCcEEEeehccchHHHHHHHHHhcccCCcc
Confidence 8999984 45566667777888887654
No 225
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.51 E-value=0.00017 Score=62.22 Aligned_cols=87 Identities=21% Similarity=0.348 Sum_probs=53.1
Q ss_pred HHHHHhcCCCC--CEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC------C-----CCeEEEEcCccc
Q 023482 132 QLAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS------I-----DQLKVLQEDFVK 198 (281)
Q Consensus 132 ~l~~~l~~~~~--~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~------~-----~~v~~~~gD~~~ 198 (281)
.+++.+++.++ .+|||.-+|-|.-+..++..|++|+++|.||.+....+.-+.. . .+++++++|..+
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 45666666665 4899999999999999998899999999999887665532211 1 279999999988
Q ss_pred cccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 199 ~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
+-- ....+||+|+.+|.|..
T Consensus 144 ~L~-----------~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 144 YLR-----------QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HCC-----------CHSS--SEEEE--S---
T ss_pred HHh-----------hcCCCCCEEEECCCCCC
Confidence 521 12368999999998854
No 226
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.45 E-value=0.00019 Score=59.61 Aligned_cols=74 Identities=23% Similarity=0.427 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.+.+|||+||++|.++..+.+.+ .+|+|+|+.+. ....++..+++|+.+....+...+.+. .....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~--~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLP--ESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHG--TTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhcc--ccccC
Confidence 34799999999999999999987 69999999876 222478888899866422211111110 12368
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
+|+|+++.
T Consensus 92 ~dlv~~D~ 99 (181)
T PF01728_consen 92 FDLVLSDM 99 (181)
T ss_dssp ESEEEE--
T ss_pred cceecccc
Confidence 99999986
No 227
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.39 E-value=0.0011 Score=59.03 Aligned_cols=94 Identities=11% Similarity=0.254 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccc
Q 023482 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCH 200 (281)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~ 200 (281)
.-+-+.+.+++.+.+.++...+|.--|.|..+..+.+.. ++++|+|.|+.+++.|++.+..+ ++++++++++.++.
T Consensus 7 HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~ 86 (314)
T COG0275 7 HIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLA 86 (314)
T ss_pred ccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHH
Confidence 345678889999999999999999999999999999873 58999999999999999999875 49999999988765
Q ss_pred cccchhhHHHhhcCCCCccEEEEcC
Q 023482 201 IRSHMLSLFERRKSSSGFAKVVANI 225 (281)
Q Consensus 201 ~~d~~~d~v~~~~~~~~~d~Vi~n~ 225 (281)
... .. ...+.+|.|+.++
T Consensus 87 ~~l------~~-~~i~~vDGiL~DL 104 (314)
T COG0275 87 EAL------KE-LGIGKVDGILLDL 104 (314)
T ss_pred HHH------Hh-cCCCceeEEEEec
Confidence 321 11 1235677777654
No 228
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.34 E-value=0.0026 Score=55.01 Aligned_cols=109 Identities=14% Similarity=0.175 Sum_probs=59.3
Q ss_pred CCCCCcccCccccCCHHHHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHhcCCC
Q 023482 112 GRFPRKSLGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID 187 (281)
Q Consensus 112 ~~~~~~~~g~~~~~~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~--~~~~v~gvD~s~~~l~~a~~~~~~~~ 187 (281)
...+...+.|.+.+....+.+..-...- -.|++||=+|=+--. +++++. ...+|+.+|+|+..++..++..++.+
T Consensus 13 RP~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g 91 (243)
T PF01861_consen 13 RPEPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEG 91 (243)
T ss_dssp -----GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT
T ss_pred CCCCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC
Confidence 3456667888788877777666655543 257899999844433 222332 35699999999999999998877655
Q ss_pred -CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcccH
Q 023482 188 -QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231 (281)
Q Consensus 188 -~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~ 231 (281)
+|+.++.|+.+- ++. .-.++||.++.+|||....
T Consensus 92 l~i~~~~~DlR~~-LP~---------~~~~~fD~f~TDPPyT~~G 126 (243)
T PF01861_consen 92 LPIEAVHYDLRDP-LPE---------ELRGKFDVFFTDPPYTPEG 126 (243)
T ss_dssp --EEEE---TTS----T---------TTSS-BSEEEE---SSHHH
T ss_pred CceEEEEeccccc-CCH---------HHhcCCCEEEeCCCCCHHH
Confidence 799999998762 222 2247899999999997543
No 229
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.33 E-value=0.0012 Score=55.81 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=61.9
Q ss_pred CCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--Ce-EEEEcCccccccccchhhHHHhhcCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QL-KVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v-~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
+.+|||||||||-.+..+++. .....--|+++......+......+ |+ .-+.-|+.+-+.+-..-. .....
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~----~~~~~ 101 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPA----PLSPE 101 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccccc----ccCCC
Confidence 336999999999999999997 5688889999999877776665432 33 234555555432210000 01235
Q ss_pred CccEEEEcC-----CCcccHHHH---HHhccCCCCc
Q 023482 217 GFAKVVANI-----PFNISTDVI---KQLLPMGDIF 244 (281)
Q Consensus 217 ~~d~Vi~n~-----P~~~~~~~~---~~ll~~~~~~ 244 (281)
.||.|++.. |+.....++ .++|+++|.+
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L 137 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLL 137 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEE
Confidence 799999843 333333333 2666776654
No 230
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.30 E-value=0.0009 Score=59.62 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=59.7
Q ss_pred EEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEE
Q 023482 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi 222 (281)
+|+|+.||.|.++..+.+.|. .+.++|+++.+++..+.|+.. .++++|+.++...+ . ...+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~----~~~~~Di~~~~~~~---------~-~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN----KLIEGDITKIDEKD---------F-IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC----CCccCccccCchhh---------c-CCCCCEEE
Confidence 589999999999999988877 578899999999999988763 26788888875321 0 25689999
Q ss_pred EcCCCcccHH
Q 023482 223 ANIPFNISTD 232 (281)
Q Consensus 223 ~n~P~~~~~~ 232 (281)
+.+|-+..+.
T Consensus 68 ~gpPCq~fS~ 77 (275)
T cd00315 68 GGFPCQPFSI 77 (275)
T ss_pred eCCCChhhhH
Confidence 9999765443
No 231
>PRK11524 putative methyltransferase; Provisional
Probab=97.22 E-value=0.0013 Score=58.94 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Q 023482 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (281)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~ 184 (281)
.+.++.++++.... .+|+.|||..||+|..+.+..+.+-+.+|+|++++.++.|++++.
T Consensus 193 kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 193 KPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred ChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 34567777777665 578999999999999998888889999999999999999999986
No 232
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.19 E-value=0.0014 Score=55.85 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=45.7
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~ 181 (281)
...+..++++++.... .+++.|||..||+|..+.+..+.+.+.+|+|+++..++.|++
T Consensus 174 ~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 174 TQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 3456788888887765 568899999999999999888889999999999999999874
No 233
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.003 Score=54.46 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=71.4
Q ss_pred HHHHHhcCC-CCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEE-EEcCccccccccchhhH
Q 023482 132 QLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKV-LQEDFVKCHIRSHMLSL 208 (281)
Q Consensus 132 ~l~~~l~~~-~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~-~~gD~~~~~~~d~~~d~ 208 (281)
..++...+. ++..+||||+-||.+|-.+.+.|+ +|+|||+....+.+- ++..+++.+ ...|+..+...+
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~d~rV~~~E~tN~r~l~~~~----- 140 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRNDPRVIVLERTNVRYLTPED----- 140 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---HhcCCcEEEEecCChhhCCHHH-----
Confidence 344444443 678999999999999999999966 999999987666553 333335543 444666554332
Q ss_pred HHhhcCCCCccEEEEcCCCcccH---HHHHHhccCCCCcceEEEeehhhHHHHhc
Q 023482 209 FERRKSSSGFAKVVANIPFNIST---DVIKQLLPMGDIFSEVVLLLQEETALRLV 260 (281)
Q Consensus 209 v~~~~~~~~~d~Vi~n~P~~~~~---~~~~~ll~~~~~~~~~~~~~~~~~a~rl~ 260 (281)
-.+..|.++++.-|-... |.+..++++++.+ ....-.|-|.....+
T Consensus 141 -----~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~-v~LvKPQFEagr~~v 189 (245)
T COG1189 141 -----FTEKPDLIVIDVSFISLKLILPALLLLLKDGGDL-VLLVKPQFEAGREQV 189 (245)
T ss_pred -----cccCCCeEEEEeehhhHHHHHHHHHHhcCCCceE-EEEecchhhhhhhhc
Confidence 113678888887764443 4455666655432 223334445554544
No 234
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.10 E-value=0.0052 Score=54.39 Aligned_cols=40 Identities=25% Similarity=0.153 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR 180 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~ 180 (281)
...+||-.|||.|.++..+|..|..+.|.|.|--|+-...
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~ 95 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN 95 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH
Confidence 3468999999999999999999999999999999975443
No 235
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.09 E-value=0.0026 Score=54.52 Aligned_cols=102 Identities=14% Similarity=0.210 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCC------CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC----CeEEEEc
Q 023482 127 SEINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID----QLKVLQE 194 (281)
Q Consensus 127 ~~~~~~l~~~l~~~------~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~g 194 (281)
.+++.++...+... +.-++||||.|.-.+--.+-.+ |-+.+|.|+|+..++.|+..+..+. .|++...
T Consensus 58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~q 137 (292)
T COG3129 58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQ 137 (292)
T ss_pred hHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEec
Confidence 45566666665322 3347899998866544444333 6699999999999999999987663 5665543
Q ss_pred CccccccccchhhHHHhhcCCCCccEEEEcCCCcccHHHHH
Q 023482 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235 (281)
Q Consensus 195 D~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~ 235 (281)
.=.+--|++ ++ .....||...+||||+...+...
T Consensus 138 k~~~~if~g----ii---g~nE~yd~tlCNPPFh~s~~da~ 171 (292)
T COG3129 138 KDSDAIFNG----II---GKNERYDATLCNPPFHDSAADAR 171 (292)
T ss_pred cCccccccc----cc---cccceeeeEecCCCcchhHHHHH
Confidence 322221221 11 23478999999999987775543
No 236
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.07 E-value=0.0034 Score=56.18 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=40.6
Q ss_pred ccCCHHHHHHHHHHhcCC-CCCEEEEEcCCccH----HHHHHHHc------CCEEEEEeCCHHHHHHHHHH
Q 023482 123 YMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGS----LTNVLLNA------GATVLAIEKDQHMVGLVRER 182 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~-~~~~VLDiGcG~G~----~t~~la~~------~~~v~gvD~s~~~l~~a~~~ 182 (281)
|+.++...+.+.+.+... ..-+|+..||+||- +++.+.+. ..+|+|+|+|+.+++.|++-
T Consensus 96 FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 96 FFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred ccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 555655555555444322 23599999999997 33333332 24899999999999999854
No 237
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.07 E-value=0.0035 Score=56.98 Aligned_cols=66 Identities=17% Similarity=0.335 Sum_probs=50.2
Q ss_pred HHHHHhcCCCCCEEEEEcCCccHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHhc--CCCCeEE--EEcCcccc
Q 023482 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFA--SIDQLKV--LQEDFVKC 199 (281)
Q Consensus 132 ~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~------~~~v~gvD~s~~~l~~a~~~~~--~~~~v~~--~~gD~~~~ 199 (281)
.|...+. ++..|+|+|||.|.=+..|.+. ..++++||+|.++++.+..++. ..+.+++ ++||+.+.
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 3444443 5668999999999987766553 3589999999999999999887 3355665 89998663
No 238
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0013 Score=52.58 Aligned_cols=75 Identities=15% Similarity=0.252 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (281)
Q Consensus 128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~ 202 (281)
+-++.++..+...+..+.+|+|+|.|.+-.+.++.+ ..-+|+|+++-.+.+++-+.-+. +..+|..-|..+.++.
T Consensus 59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 345556667766666689999999999999999887 58999999999999988665433 3788889999888754
No 239
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.99 E-value=0.0039 Score=53.21 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=49.5
Q ss_pred CCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC-C-CeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482 142 GDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~-~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
..+.||.|+|.|..|..+... -.+|..||..+..++.|++.+... + -.++.+....++. .....|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~------------P~~~~Y 123 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT------------PEEGKY 123 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----------------TT-E
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc------------CCCCcE
Confidence 458999999999999877655 559999999999999999887652 2 3467777777654 233689
Q ss_pred cEEEEc
Q 023482 219 AKVVAN 224 (281)
Q Consensus 219 d~Vi~n 224 (281)
|+|...
T Consensus 124 DlIW~Q 129 (218)
T PF05891_consen 124 DLIWIQ 129 (218)
T ss_dssp EEEEEE
T ss_pred eEEEeh
Confidence 999875
No 240
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.99 E-value=0.0043 Score=55.25 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=39.1
Q ss_pred hcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCC
Q 023482 137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI 186 (281)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~ 186 (281)
+....+.+|||+|||+|..+.++.+. -.+++++|.|+.|++.++..+...
T Consensus 29 ~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 29 LPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 33345679999999999877666553 348999999999999998877644
No 241
>PRK13699 putative methylase; Provisional
Probab=96.96 E-value=0.0036 Score=54.23 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=51.3
Q ss_pred cCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC
Q 023482 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS 185 (281)
Q Consensus 124 ~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~ 185 (281)
..+-++.+.+++... .+|+.|||..||+|..+.+..+.+.+.+|+|++++..+.|.+++..
T Consensus 147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 345567777776554 4788999999999999988888899999999999999999988763
No 242
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.89 E-value=0.0096 Score=45.77 Aligned_cols=88 Identities=25% Similarity=0.412 Sum_probs=56.0
Q ss_pred EEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCC--eEEEEcCccc--cccccchhhHHHhhcCCCC
Q 023482 145 VLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVK--CHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 145 VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--v~~~~gD~~~--~~~~d~~~d~v~~~~~~~~ 217 (281)
++|+|||+|..+ .++.. +..++++|+++.++..++........ +.+..+|... +++.+ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 119 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFED-----------SAS 119 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCC-----------CCc
Confidence 999999999976 34333 24899999999999986655533112 6888888876 55432 135
Q ss_pred ccEEEEcCCCcc-----cHHHHHHhccCCCCc
Q 023482 218 FAKVVANIPFNI-----STDVIKQLLPMGDIF 244 (281)
Q Consensus 218 ~d~Vi~n~P~~~-----~~~~~~~ll~~~~~~ 244 (281)
+|.+......++ ....+.+.+++++.+
T Consensus 120 ~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 151 (257)
T COG0500 120 FDLVISLLVLHLLPPAKALRELLRVLKPGGRL 151 (257)
T ss_pred eeEEeeeeehhcCCHHHHHHHHHHhcCCCcEE
Confidence 777744444322 223334556665554
No 243
>PHA01634 hypothetical protein
Probab=96.88 E-value=0.0026 Score=49.54 Aligned_cols=46 Identities=24% Similarity=0.219 Sum_probs=41.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI 186 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~ 186 (281)
.+++|+|||.+.|.+++.++..|+ +|+++|.++...+..+++.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 578999999999999999999977 8999999999999999887643
No 244
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.84 E-value=0.024 Score=50.41 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHhcCCC--Ce-EEEEcCccccc------c-cc---
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA--G--ATVLAIEKDQHMVGLVRERFASID--QL-KVLQEDFVKCH------I-RS--- 203 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~--~~v~gvD~s~~~l~~a~~~~~~~~--~v-~~~~gD~~~~~------~-~d--- 203 (281)
.+-+||||.||.|......... . .+|.-.|.++..++..++.++..+ ++ +|.++|+.+.. + ++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4569999999999988777664 2 489999999999999999988654 55 99999997742 1 01
Q ss_pred --chh------hHHHh-------hcCCCCccEEEEcCCCcccHHHHHHhccC
Q 023482 204 --HML------SLFER-------RKSSSGFAKVVANIPFNISTDVIKQLLPM 240 (281)
Q Consensus 204 --~~~------d~v~~-------~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~ 240 (281)
+.| +.+.. ...++ --+|+.|-|+|...+.+.+.|.+
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pg-G~lIyTgQPwHPQle~IAr~Lts 265 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPG-GYLIYTGQPWHPQLEMIARVLTS 265 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCC-cEEEEcCCCCCcchHHHHHHHhc
Confidence 111 22221 12222 35677788888777777777755
No 245
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.83 E-value=0.0025 Score=60.39 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcC--CCC--CEEEEEcCCccHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHhcCCCCeEEE--EcCcc
Q 023482 127 SEINDQLAAAAAV--QEG--DIVLEIGPGTGSLTNVLLNAGATVLAI---EKDQHMVGLVRERFASIDQLKVL--QEDFV 197 (281)
Q Consensus 127 ~~~~~~l~~~l~~--~~~--~~VLDiGcG~G~~t~~la~~~~~v~gv---D~s~~~l~~a~~~~~~~~~v~~~--~gD~~ 197 (281)
..+++.+.+.+.. ..+ ..+||+|||+|.++..|.+++..+..+ |..+..++.|.++- +-.+ ..-..
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG-----vpa~~~~~~s~ 173 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG-----VPAMIGVLGSQ 173 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC-----cchhhhhhccc
Confidence 4566677777765 333 368999999999999999997654444 44455666665541 1122 22245
Q ss_pred ccccccchhhHHHh
Q 023482 198 KCHIRSHMLSLFER 211 (281)
Q Consensus 198 ~~~~~d~~~d~v~~ 211 (281)
.+|+++++||.+-+
T Consensus 174 rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 174 RLPFPSNAFDMVHC 187 (506)
T ss_pred cccCCccchhhhhc
Confidence 78999999988744
No 246
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.83 E-value=0.0067 Score=51.69 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccc
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK 198 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~ 198 (281)
.+..+.||||--|++...|.+.+ ..+++.|+++..++.|.+++.+++ ++++..+|...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~ 78 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA 78 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc
Confidence 45569999999999999999874 489999999999999999998764 78888888854
No 247
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0036 Score=53.00 Aligned_cols=74 Identities=19% Similarity=0.336 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++..|+|+|+..|..+..+++. + ..|+|+|+.|- +...+|.++++|+++-+..+ ++... ....
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~~~V~~iq~d~~~~~~~~---~l~~~-l~~~ 110 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPIPGVIFLQGDITDEDTLE---KLLEA-LGGA 110 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccCCCceEEeeeccCccHHH---HHHHH-cCCC
Confidence 46789999999999999999987 2 35999999873 22247999999998865433 22222 2334
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|+|++++.
T Consensus 111 ~~DvV~sD~a 120 (205)
T COG0293 111 PVDVVLSDMA 120 (205)
T ss_pred CcceEEecCC
Confidence 4799998753
No 248
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.79 E-value=0.0024 Score=59.35 Aligned_cols=57 Identities=33% Similarity=0.473 Sum_probs=48.8
Q ss_pred EEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccc
Q 023482 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH 200 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~ 200 (281)
.|||||+|||.++...+..|+ .|+|+|.-+.|...|++...+++ +|+++.---.++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK 129 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence 689999999999988888766 89999999999999999888774 8888877665554
No 249
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.78 E-value=0.014 Score=50.06 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=66.5
Q ss_pred hcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482 137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
+.+.+|.+||-+|.++|.....++.- .+.|+|||.++......-...++..||--+-+|+.. |..-. .
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~-P~~Y~--------~ 139 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARH-PEKYR--------M 139 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTS-GGGGT--------T
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCC-hHHhh--------c
Confidence 35668899999999999999999885 459999999997766665555555699999999975 21110 1
Q ss_pred CCCCccEEEEcCCCcccHHHH----HHhccCCCCc
Q 023482 214 SSSGFAKVVANIPFNISTDVI----KQLLPMGDIF 244 (281)
Q Consensus 214 ~~~~~d~Vi~n~P~~~~~~~~----~~ll~~~~~~ 244 (281)
--+..|+|+.+........++ +.+|+.+|.+
T Consensus 140 lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~ 174 (229)
T PF01269_consen 140 LVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHL 174 (229)
T ss_dssp TS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEE
T ss_pred ccccccEEEecCCChHHHHHHHHHHHhhccCCcEE
Confidence 125789999997754444443 3677887765
No 250
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.76 E-value=0.0033 Score=56.73 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=54.2
Q ss_pred EEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEE
Q 023482 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi 222 (281)
+++|+.||.|.+...+.+.|. .+.++|+++.+.+.-+.|+. .+..+|+.++...+ .+. .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~---------l~~-~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSD---------LPK-DVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHH---------HHH-T-SEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----cccccccccccccc---------ccc-cceEEE
Confidence 689999999999999999885 78999999999999999886 78999999986431 111 489999
Q ss_pred EcCC
Q 023482 223 ANIP 226 (281)
Q Consensus 223 ~n~P 226 (281)
+.||
T Consensus 67 ggpP 70 (335)
T PF00145_consen 67 GGPP 70 (335)
T ss_dssp EE--
T ss_pred eccC
Confidence 9887
No 251
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.71 E-value=0.012 Score=49.87 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=42.2
Q ss_pred CCCEEEEEcCCccH----HHHHHHHc-----C--CEEEEEeCCHHHHHHHHHHh-------------------cC-C---
Q 023482 141 EGDIVLEIGPGTGS----LTNVLLNA-----G--ATVLAIEKDQHMVGLVRERF-------------------AS-I--- 186 (281)
Q Consensus 141 ~~~~VLDiGcG~G~----~t~~la~~-----~--~~v~gvD~s~~~l~~a~~~~-------------------~~-~--- 186 (281)
..-+|+..||++|. +++.+.+. + .+|+|.|+|+.+++.|++-. .. .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34589999999997 33444441 2 49999999999999997421 00 0
Q ss_pred -------CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEc
Q 023482 187 -------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (281)
Q Consensus 187 -------~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n 224 (281)
.+|+|.+.|..+.+ ...+.||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~------------~~~~~fD~I~CR 143 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPD------------PPFGRFDLIFCR 143 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------------------EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCC------------cccCCccEEEec
Confidence 26888888887721 334789999994
No 252
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.69 E-value=0.015 Score=49.53 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchh
Q 023482 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML 206 (281)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~ 206 (281)
+...+.+.+. .+|.+||+||.|.|.....+.+.. .+-+-||.+++.++..+..--.. .||.++.|-..+.-..
T Consensus 90 iMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~---- 164 (271)
T KOG1709|consen 90 IMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT---- 164 (271)
T ss_pred HHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc----
Confidence 3344444444 467899999999999999998873 36688999999999988775433 4999999987764211
Q ss_pred hHHHhhcCCCCccEEEEcC--CCcc----cHHHHHHhccCCCCc
Q 023482 207 SLFERRKSSSGFAKVVANI--PFNI----STDVIKQLLPMGDIF 244 (281)
Q Consensus 207 d~v~~~~~~~~~d~Vi~n~--P~~~----~~~~~~~ll~~~~~~ 244 (281)
...+.||.|+-+. |+.. ....+.+|+++++.+
T Consensus 165 ------L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~ 202 (271)
T KOG1709|consen 165 ------LPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVF 202 (271)
T ss_pred ------ccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceE
Confidence 3346699998752 3322 113445888888876
No 253
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0046 Score=58.37 Aligned_cols=103 Identities=15% Similarity=0.270 Sum_probs=80.2
Q ss_pred EEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHh-cCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEE
Q 023482 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~-~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~V 221 (281)
++|.+|||.-.+...+.+.|. .|+.+|+|+..++...... ......++...|+..+.|+|.+||.+ ...+.+|..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiV---IdkGtlDal 127 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIV---IDKGTLDAL 127 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEE---EecCccccc
Confidence 899999999999999888875 8999999999999887665 33358899999999999999999988 667888888
Q ss_pred EEcCCCcc-------cHHHHHHhccCCCCcceEEE
Q 023482 222 VANIPFNI-------STDVIKQLLPMGDIFSEVVL 249 (281)
Q Consensus 222 i~n~P~~~-------~~~~~~~ll~~~~~~~~~~~ 249 (281)
+..-+--+ ....+.+++++++.+..+.+
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 87643222 11333466777777655554
No 254
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.57 E-value=0.0087 Score=50.77 Aligned_cols=92 Identities=13% Similarity=0.145 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCC-CCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhh
Q 023482 129 INDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (281)
Q Consensus 129 ~~~~l~~~l~~~~-~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d 207 (281)
=++.+++++.-.+ ...|.|+|||.+.++..+. .+.+|...|+-.. |-.++.+|+..+|+++
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~-------------n~~Vtacdia~vPL~~---- 120 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP-------------NPRVTACDIANVPLED---- 120 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S-------------STTEEES-TTS-S--T----
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC-------------CCCEEEecCccCcCCC----
Confidence 3566677776444 4589999999999986653 3468999998642 2247889999999765
Q ss_pred HHHhhcCCCCccEEEEcCCC--cccHHH---HHHhccCCCCcce
Q 023482 208 LFERRKSSSGFAKVVANIPF--NISTDV---IKQLLPMGDIFSE 246 (281)
Q Consensus 208 ~v~~~~~~~~~d~Vi~n~P~--~~~~~~---~~~ll~~~~~~~~ 246 (281)
+..|++|..+-. ....++ ..++|+++|.+..
T Consensus 121 --------~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~I 156 (219)
T PF05148_consen 121 --------ESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKI 156 (219)
T ss_dssp --------T-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEE
T ss_pred --------CceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEE
Confidence 667888876544 222233 3488888776643
No 255
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.51 E-value=0.0019 Score=59.86 Aligned_cols=61 Identities=13% Similarity=0.261 Sum_probs=54.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCcccc
Q 023482 139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKC 199 (281)
Q Consensus 139 ~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~~~ 199 (281)
.++|..|.|+.||.|-+++.++..++.|++-|.+++++++.+.+++-+. +++++..|+.++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 3478899999999999999999999999999999999999999987652 699999998764
No 256
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.48 E-value=0.01 Score=54.19 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHh--cC-------CCCeEEEEcCccccccccchhhHH
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERF--AS-------IDQLKVLQEDFVKCHIRSHMLSLF 209 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~--~~-------~~~v~~~~gD~~~~~~~d~~~d~v 209 (281)
...+||-+|-|.|.-++.+.+. -.+|+-||.||+|++.++.+. .. .++++++..|+..+--
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr-------- 360 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR-------- 360 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH--------
Confidence 4568999999999999999987 349999999999999998442 11 1389999999876421
Q ss_pred HhhcCCCCccEEEEcCCC
Q 023482 210 ERRKSSSGFAKVVANIPF 227 (281)
Q Consensus 210 ~~~~~~~~~d~Vi~n~P~ 227 (281)
...+.||.||.++|-
T Consensus 361 ---~a~~~fD~vIVDl~D 375 (508)
T COG4262 361 ---TAADMFDVVIVDLPD 375 (508)
T ss_pred ---hhcccccEEEEeCCC
Confidence 334689999998763
No 257
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.46 E-value=0.0084 Score=52.21 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccc
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCH 200 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~ 200 (281)
.+.+|+|||||.=-++...... +..++|.|+|..+++....-....+ +.++...|...-+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP 167 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC
Confidence 4679999999999988876655 5699999999999999988776554 7788888877653
No 258
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.36 E-value=0.023 Score=55.05 Aligned_cols=98 Identities=21% Similarity=0.335 Sum_probs=68.9
Q ss_pred cccCCHHHHHHHHHHhcCC--CCCEEEEEcCCccHHHHHHHHc---C---CEEEEEeCCHHHHHHHHHHhcCC----CCe
Q 023482 122 HYMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNA---G---ATVLAIEKDQHMVGLVRERFASI----DQL 189 (281)
Q Consensus 122 ~~~~~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~~---~---~~v~gvD~s~~~l~~a~~~~~~~----~~v 189 (281)
.+++++.++..+.+.+.+. ++..|.|..||+|.+....... + ..++|.|....+...++.+..-. +..
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~ 275 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANF 275 (501)
T ss_pred eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcccc
Confidence 3889999999988877654 4568999999999988754431 2 36999999999999999874311 133
Q ss_pred EEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 190 ~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
....+|-..-+ |.+ ....||.|++||||..
T Consensus 276 ~~~~~dtl~~~------d~~----~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 276 NIINADTLTTK------EWE----NENGFEVVVSNPPYSI 305 (501)
T ss_pred CcccCCcCCCc------ccc----ccccCCEEeecCCccc
Confidence 44455544322 221 2246899999999964
No 259
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.31 E-value=0.0089 Score=50.76 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=39.1
Q ss_pred HHHHHHHHHh----cCCCCCEEEEEcCCccHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHhc
Q 023482 128 EINDQLAAAA----AVQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFA 184 (281)
Q Consensus 128 ~~~~~l~~~l----~~~~~~~VLDiGcG~G~~t~~la~~----~~~v~gvD~s~~~l~~a~~~~~ 184 (281)
+++..+.+.. .-..+-++.|.+||.|++.-.+.-. -..|+|-|+|+++++.|++|+.
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 4444444443 2234458999999999988777653 2489999999999999998764
No 260
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.24 E-value=0.016 Score=50.55 Aligned_cols=89 Identities=10% Similarity=0.126 Sum_probs=59.4
Q ss_pred HHHHHHHhcCCCC-CEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhH
Q 023482 130 NDQLAAAAAVQEG-DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL 208 (281)
Q Consensus 130 ~~~l~~~l~~~~~-~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~ 208 (281)
++.++..+...++ ..|.|+|||.+-++. ..-.+|+.+|+.+ -|-+++.+|+.++|++|
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-------------~~~~V~~cDm~~vPl~d----- 226 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA-------------VNERVIACDMRNVPLED----- 226 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec-------------CCCceeeccccCCcCcc-----
Confidence 5566666655444 578999999998775 2245788888742 14468999999999876
Q ss_pred HHhhcCCCCccEEEEcCCC-----cccHHHHHHhccCCCCcce
Q 023482 209 FERRKSSSGFAKVVANIPF-----NISTDVIKQLLPMGDIFSE 246 (281)
Q Consensus 209 v~~~~~~~~~d~Vi~n~P~-----~~~~~~~~~ll~~~~~~~~ 246 (281)
.+.|++|..+-. ........++|++||.+..
T Consensus 227 -------~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 227 -------ESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYI 262 (325)
T ss_pred -------CcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEE
Confidence 556666654433 1122333588999887643
No 261
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.20 E-value=0.011 Score=53.84 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=54.2
Q ss_pred EEEEcCCccHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEE
Q 023482 145 VLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (281)
Q Consensus 145 VLDiGcG~G~~t~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~ 223 (281)
|+|+.||.|.+..-+.+.|.+ +.++|+++.+.+..+.|+.. .++++|+.++...+ ...+|++++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~----~~~~~Di~~~~~~~-----------~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN----KVPFGDITKISPSD-----------IPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC----CCCccChhhhhhhh-----------CCCcCEEEe
Confidence 689999999999999888876 56799999999999988763 56678988875422 235799999
Q ss_pred cCCC
Q 023482 224 NIPF 227 (281)
Q Consensus 224 n~P~ 227 (281)
.+|=
T Consensus 66 g~PC 69 (315)
T TIGR00675 66 GFPC 69 (315)
T ss_pred cCCC
Confidence 8773
No 262
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.19 E-value=0.008 Score=50.99 Aligned_cols=124 Identities=14% Similarity=0.093 Sum_probs=60.3
Q ss_pred CCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc------CCEEEEEeCCHHHHHH-HHHHhcCCC
Q 023482 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGL-VRERFASID 187 (281)
Q Consensus 115 ~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~------~~~v~gvD~s~~~l~~-a~~~~~~~~ 187 (281)
...|+|...+..|.-...+-+.+--.+++.|+|+|.-.|.++..+|.. .++|+|||++-..... +.+..+-.+
T Consensus 6 ~~~w~G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~ 85 (206)
T PF04989_consen 6 NFSWLGRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSP 85 (206)
T ss_dssp -EEETTEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----T
T ss_pred cccCCCeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccC
Confidence 345677755555554444444443335789999999999999888763 3699999997544432 222222235
Q ss_pred CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC--CCcccHHHH---HHhccCCC
Q 023482 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI--PFNISTDVI---KQLLPMGD 242 (281)
Q Consensus 188 ~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~--P~~~~~~~~---~~ll~~~~ 242 (281)
+|++++||..+....+. +...........||-+- -+......+ ..++.+|+
T Consensus 86 rI~~i~Gds~d~~~~~~----v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~ 141 (206)
T PF04989_consen 86 RITFIQGDSIDPEIVDQ----VRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGS 141 (206)
T ss_dssp TEEEEES-SSSTHHHHT----SGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-
T ss_pred ceEEEECCCCCHHHHHH----HHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCC
Confidence 99999999877542221 11112234566777643 333333333 35555543
No 263
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.10 E-value=0.019 Score=53.29 Aligned_cols=86 Identities=14% Similarity=0.217 Sum_probs=67.9
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhh
Q 023482 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLS 207 (281)
Q Consensus 133 l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d 207 (281)
....+.++++.+|||..+..|.=|..+|.. .+.|+|.|.+...+...+.++.+.+ |..+.+.|..++|-.
T Consensus 233 pv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~----- 307 (460)
T KOG1122|consen 233 PVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEK----- 307 (460)
T ss_pred eeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccc-----
Confidence 334457889999999999999988888875 4589999999999999999998776 778888898876532
Q ss_pred HHHhhcCCCCccEEEEcCCCc
Q 023482 208 LFERRKSSSGFAKVVANIPFN 228 (281)
Q Consensus 208 ~v~~~~~~~~~d~Vi~n~P~~ 228 (281)
.-+++||.|..+-|=.
T Consensus 308 -----~~~~~fDRVLLDAPCS 323 (460)
T KOG1122|consen 308 -----EFPGSFDRVLLDAPCS 323 (460)
T ss_pred -----ccCcccceeeecCCCC
Confidence 1224788888776643
No 264
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.94 E-value=0.099 Score=46.52 Aligned_cols=85 Identities=24% Similarity=0.294 Sum_probs=48.2
Q ss_pred CCEEEEEcCCccHHH-HHHHHc---CCEEEEEeCCHHHHHHHHHHhcC-C---CCeEEEEcCccccccccchhhHHHhhc
Q 023482 142 GDIVLEIGPGTGSLT-NVLLNA---GATVLAIEKDQHMVGLVRERFAS-I---DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t-~~la~~---~~~v~gvD~s~~~l~~a~~~~~~-~---~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
+.+|+=||||.=-+| +.+++. +..|+++|+|+++++.+++.... . .+++|+.+|+.+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~------------ 188 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY------------ 188 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G------------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc------------
Confidence 359999999965555 445543 46899999999999999887762 2 389999999987652
Q ss_pred CCCCccEEEEcCCCc----ccHHHHHHhc
Q 023482 214 SSSGFAKVVANIPFN----ISTDVIKQLL 238 (281)
Q Consensus 214 ~~~~~d~Vi~n~P~~----~~~~~~~~ll 238 (281)
....||+|+-..--. .-..++.++.
T Consensus 189 dl~~~DvV~lAalVg~~~e~K~~Il~~l~ 217 (276)
T PF03059_consen 189 DLKEYDVVFLAALVGMDAEPKEEILEHLA 217 (276)
T ss_dssp G----SEEEE-TT-S----SHHHHHHHHH
T ss_pred ccccCCEEEEhhhcccccchHHHHHHHHH
Confidence 225688877654333 3335555554
No 265
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.83 E-value=0.083 Score=50.55 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=60.0
Q ss_pred CEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccch----hhHHHhh-cCCC
Q 023482 143 DIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM----LSLFERR-KSSS 216 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~----~d~v~~~-~~~~ 216 (281)
-+++|+.||.|.+...+-..|. .|.++|+++.+.+.-+.|+...+...++.+|+.++...+.. .+....+ ...+
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p 168 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIP 168 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCC
Confidence 4899999999999999988876 67899999999998888874333556677888887643211 0011000 1123
Q ss_pred CccEEEEcCCCc
Q 023482 217 GFAKVVANIPFN 228 (281)
Q Consensus 217 ~~d~Vi~n~P~~ 228 (281)
..|++++.+|=+
T Consensus 169 ~~DvL~gGpPCQ 180 (467)
T PRK10458 169 DHDVLLAGFPCQ 180 (467)
T ss_pred CCCEEEEcCCCC
Confidence 579999988744
No 266
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.63 E-value=0.043 Score=50.16 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=59.4
Q ss_pred CEEEEEcCCccHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEE
Q 023482 143 DIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~V 221 (281)
.+++|+.||.|.+..-+...|. -+.++|+++.+++.-+.|++. -.++++|+.++.... .....+|++
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~---~~~~~~di~~~~~~~---------~~~~~~Dvl 71 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH---GDIILGDIKELDGEA---------LRKSDVDVL 71 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC---CceeechHhhcChhh---------ccccCCCEE
Confidence 4799999999999999988886 688999999999999988863 467778887765321 111168999
Q ss_pred EEcCCCcccH
Q 023482 222 VANIPFNIST 231 (281)
Q Consensus 222 i~n~P~~~~~ 231 (281)
++.||=+-.+
T Consensus 72 igGpPCQ~FS 81 (328)
T COG0270 72 IGGPPCQDFS 81 (328)
T ss_pred EeCCCCcchh
Confidence 9998854333
No 267
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=95.44 E-value=0.033 Score=50.02 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=54.7
Q ss_pred EEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (281)
Q Consensus 146 LDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~ 220 (281)
+|||+|+-.+-..+-.. +...+++|+++..+..|+.++..++ .+++++-...+.-+. |.+.+ ....-||.
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~----d~~~~-~~e~~ydF 181 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLM----DALKE-ESEIIYDF 181 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcch----hhhcc-CccceeeE
Confidence 78887765544444332 5689999999999999999998764 677777655433222 22211 22345899
Q ss_pred EEEcCCCcccH
Q 023482 221 VVANIPFNIST 231 (281)
Q Consensus 221 Vi~n~P~~~~~ 231 (281)
+-+||||....
T Consensus 182 cMcNPPFfe~~ 192 (419)
T KOG2912|consen 182 CMCNPPFFENQ 192 (419)
T ss_pred EecCCchhhch
Confidence 99999997653
No 268
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.39 E-value=0.13 Score=47.14 Aligned_cols=98 Identities=20% Similarity=0.233 Sum_probs=64.3
Q ss_pred hcCCCCCEEEEEcCC-ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcC
Q 023482 137 AAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 137 l~~~~~~~VLDiGcG-~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.+..++++|+=+|+| .|.++..+|+. +++|+++|++++-.+.|++.-. -.++... ..-..+ .-
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA----d~~i~~~-~~~~~~----------~~ 226 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA----DHVINSS-DSDALE----------AV 226 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC----cEEEEcC-CchhhH----------Hh
Confidence 456789999888887 44577888884 8999999999999999987633 2334432 111100 11
Q ss_pred CCCccEEEEcCCCcccHHHHHHhccCCCCcceEEEe
Q 023482 215 SSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLL 250 (281)
Q Consensus 215 ~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~ 250 (281)
.+.+|+|+...+ ....+..-++++.++.+...-+.
T Consensus 227 ~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 227 KEIADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred HhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 123888888777 55555556677777766444433
No 269
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.32 E-value=0.055 Score=47.74 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHhcCCCC-CEEEEEcCCccH--HHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCC--eEEEEcCcc
Q 023482 126 NSEINDQLAAAAAVQEG-DIVLEIGPGTGS--LTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFV 197 (281)
Q Consensus 126 ~~~~~~~l~~~l~~~~~-~~VLDiGcG~G~--~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--v~~~~gD~~ 197 (281)
++.++.+.+..+.-..| ...||||||.-. .+-.+++. .++|+=||.+|-.+..++..+...++ ..++++|+.
T Consensus 52 nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r 131 (267)
T PF04672_consen 52 NRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLR 131 (267)
T ss_dssp HHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT
T ss_pred HHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCC
Confidence 34455566666554423 589999999553 45556654 67999999999999999998887666 899999998
Q ss_pred cc
Q 023482 198 KC 199 (281)
Q Consensus 198 ~~ 199 (281)
+.
T Consensus 132 ~p 133 (267)
T PF04672_consen 132 DP 133 (267)
T ss_dssp -H
T ss_pred CH
Confidence 74
No 270
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.27 E-value=0.012 Score=54.44 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=57.3
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHH
Q 023482 138 AVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLF 209 (281)
Q Consensus 138 ~~~~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v 209 (281)
...++..++|+|||.|.....++.. +++++|++.++.-+..+....... .+..++.+|+.+.|++|+.||.+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcE
Confidence 3446668999999999999999987 579999999998887776554332 24455999999999998777664
No 271
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.06 E-value=0.19 Score=42.45 Aligned_cols=96 Identities=16% Similarity=0.246 Sum_probs=69.5
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 138 AVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 138 ~~~~~~~VLDiGcG~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.+.++.+||=+|..+|.....++.- + +.++|||+++......-....+..|+--+.+|+..-. . --.++
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~-~--Y~~~V------ 143 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPE-K--YRHLV------ 143 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcH-H--hhhhc------
Confidence 5678999999999999999999886 3 5899999999988877766666678888999986521 0 00111
Q ss_pred CCccEEEEcCCCcccHHHH----HHhccCCC
Q 023482 216 SGFAKVVANIPFNISTDVI----KQLLPMGD 242 (281)
Q Consensus 216 ~~~d~Vi~n~P~~~~~~~~----~~ll~~~~ 242 (281)
+..|+|+.+...-....++ +.+++.+|
T Consensus 144 e~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G 174 (231)
T COG1889 144 EKVDVIYQDVAQPNQAEILADNAEFFLKKGG 174 (231)
T ss_pred ccccEEEEecCCchHHHHHHHHHHHhcccCC
Confidence 4578898887654444444 24555555
No 272
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.99 E-value=0.011 Score=50.07 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=55.8
Q ss_pred HhcCCCCCcccCccccCCHHHHHHHHHHhcCC---CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Q 023482 109 NSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182 (281)
Q Consensus 109 ~~~~~~~~~~~g~~~~~~~~~~~~l~~~l~~~---~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~ 182 (281)
.+..+..-..+|..|+..++--.+++..-++. .+.++||+|+|.|.++..|+..-.+|++.|.|..|..+.++.
T Consensus 77 s~TdING~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 77 SQTDINGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred hhhccccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence 33345555556677887777666666554332 346899999999999999998867899999999999888764
No 273
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.90 E-value=0.013 Score=43.98 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=24.1
Q ss_pred EEEcCCccHHHHHHHHc---C--CEEEEEeCCHH---HHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 146 LEIGPGTGSLTNVLLNA---G--ATVLAIEKDQH---MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 146 LDiGcG~G~~t~~la~~---~--~~v~gvD~s~~---~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
||||+..|.++..+++. . .+++++|..+. .-+..++ ..-.++++++++|..+.- +. ...++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l-~~---------~~~~~ 69 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFL-PS---------LPDGP 69 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHH-HH---------HHH--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHH-HH---------cCCCC
Confidence 69999999999998874 2 37999999995 3333332 111248999999986641 10 11368
Q ss_pred ccEEEEcCC
Q 023482 218 FAKVVANIP 226 (281)
Q Consensus 218 ~d~Vi~n~P 226 (281)
+|+|+.+-.
T Consensus 70 ~dli~iDg~ 78 (106)
T PF13578_consen 70 IDLIFIDGD 78 (106)
T ss_dssp EEEEEEES-
T ss_pred EEEEEECCC
Confidence 899998754
No 274
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.87 E-value=0.028 Score=50.08 Aligned_cols=59 Identities=25% Similarity=0.399 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCccHHHH-HHHHcCC-EEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCcccc
Q 023482 141 EGDIVLEIGPGTGSLTN-VLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC 199 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~-~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~~~~ 199 (281)
.+..|.|+-+|.||+|. .+...|+ .|+++|.+|..++..+.+.+.++ ...+++||-...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~ 257 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP 257 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc
Confidence 35789999999999999 6666665 89999999999999999887663 566777776654
No 275
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=94.75 E-value=0.12 Score=40.40 Aligned_cols=74 Identities=14% Similarity=0.291 Sum_probs=43.1
Q ss_pred CCEEEEEcCCccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482 142 GDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (281)
Q Consensus 142 ~~~VLDiGcG~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~ 220 (281)
..+|.|+|-|.=. .+..|.+.|..|+++|+++. .+. ..+.++..|+.+-.+ ++ ....|+
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~------~g~~~v~DDif~P~l-----~i------Y~~a~l 73 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP------EGVNFVVDDIFNPNL-----EI------YEGADL 73 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------------STTEE---SSS--H-----HH------HTTEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc------cCcceeeecccCCCH-----HH------hcCCcE
Confidence 3499999988654 55666667999999999998 111 266789999887322 11 246799
Q ss_pred EEE-cCCCcccHHHHH
Q 023482 221 VVA-NIPFNISTDVIK 235 (281)
Q Consensus 221 Vi~-n~P~~~~~~~~~ 235 (281)
|.| +||.....++++
T Consensus 74 IYSiRPP~El~~~il~ 89 (127)
T PF03686_consen 74 IYSIRPPPELQPPILE 89 (127)
T ss_dssp EEEES--TTSHHHHHH
T ss_pred EEEeCCChHHhHHHHH
Confidence 999 788888777765
No 276
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.61 E-value=0.12 Score=47.48 Aligned_cols=90 Identities=23% Similarity=0.263 Sum_probs=65.0
Q ss_pred HHhcCCCCCEEEEEcCCccHHHHHHHHcCC------EEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchh
Q 023482 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGA------TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHML 206 (281)
Q Consensus 135 ~~l~~~~~~~VLDiGcG~G~~t~~la~~~~------~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~ 206 (281)
-.++++++++|||+++..|.-|+.|.+... .|++=|+++..+........... ++.+...|+...|-..-.
T Consensus 149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~- 227 (375)
T KOG2198|consen 149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK- 227 (375)
T ss_pred hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc-
Confidence 345778999999999999999999988632 89999999999998887775443 677777777665532100
Q ss_pred hHHHhhcCCCCccEEEEcCCC
Q 023482 207 SLFERRKSSSGFAKVVANIPF 227 (281)
Q Consensus 207 d~v~~~~~~~~~d~Vi~n~P~ 227 (281)
|+-+ .....||.|+.+.|=
T Consensus 228 ~~~~--~~~~~fDrVLvDVPC 246 (375)
T KOG2198|consen 228 DGND--KEQLKFDRVLVDVPC 246 (375)
T ss_pred cCch--hhhhhcceeEEeccc
Confidence 0000 133579999998774
No 277
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.60 E-value=0.16 Score=44.57 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=35.5
Q ss_pred CCEEEEEcCCccHHHHHHHHc----------CCEEEEEeCCHHHHHHHHHHhcC
Q 023482 142 GDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVRERFAS 185 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~----------~~~v~gvD~s~~~l~~a~~~~~~ 185 (281)
+-+|+|+|+|+|.++..++.. ..+++-||+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 468999999999999998763 24899999999999988888865
No 278
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.47 E-value=0.048 Score=41.27 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s 172 (281)
+...-.|||||.|.+.-.|.+.|.+=.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 44579999999999999999999889999974
No 279
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.45 E-value=0.039 Score=46.57 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=44.7
Q ss_pred CEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCC---------CCeEEEEcCcccc
Q 023482 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---------DQLKVLQEDFVKC 199 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~---------~~v~~~~gD~~~~ 199 (281)
..+.|||||.|.++..|+.. ..-+.|.||--..-+..+.++... .|+.+++.++...
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF 129 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence 46899999999999999987 568999999877777666665421 3788888887654
No 280
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.43 E-value=0.14 Score=47.23 Aligned_cols=41 Identities=34% Similarity=0.487 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~ 181 (281)
+-+.|+|+|.|.|+++..|+-. +..|+|||-|....+.|+.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4478999999999999999876 7799999999888777753
No 281
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=0.23 Score=45.56 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=47.8
Q ss_pred cccCCHHHHHH--------HHHHh---cCCCCCEEEEEcCCccHHHHHHHHc----------CCEEEEEeCCHHHHHHHH
Q 023482 122 HYMLNSEINDQ--------LAAAA---AVQEGDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVR 180 (281)
Q Consensus 122 ~~~~~~~~~~~--------l~~~l---~~~~~~~VLDiGcG~G~~t~~la~~----------~~~v~gvD~s~~~l~~a~ 180 (281)
.|++.+++... +++.. ....+-.++|||.|.|.+...++.. ..++.-||+|++..+.-+
T Consensus 47 DFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk 126 (370)
T COG1565 47 DFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK 126 (370)
T ss_pred CeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence 58888776433 22222 3333458999999999999888652 358999999999999888
Q ss_pred HHhcCC
Q 023482 181 ERFASI 186 (281)
Q Consensus 181 ~~~~~~ 186 (281)
++++..
T Consensus 127 ~~L~~~ 132 (370)
T COG1565 127 ETLKAT 132 (370)
T ss_pred HHHhcc
Confidence 888743
No 282
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=94.02 E-value=0.14 Score=46.72 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=47.1
Q ss_pred CEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 023482 143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~ 199 (281)
...+|+|.|+|..+..+...-.+|-+++.+...+-.++..+. ..|+.+-||...-
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQD 233 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceeccccccc
Confidence 689999999999999999865689999999999988888874 2488888997663
No 283
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.02 E-value=0.34 Score=44.55 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhcCC-C-CeEEEEcCcccccccc
Q 023482 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKCHIRS 203 (281)
Q Consensus 128 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~-~-~v~~~~gD~~~~~~~d 203 (281)
++.-..++.+.-.-+.+|||.=+|+|.=++..+.. +. +|+.=|+||.+++.+++|+..+ + +..+++.|+..+-..
T Consensus 39 DlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~- 117 (380)
T COG1867 39 DLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE- 117 (380)
T ss_pred chhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh-
Confidence 34444444443222679999999999999999876 44 8999999999999999999876 3 777777888765321
Q ss_pred chhhHHHhhcCCCCccEEEEcCCCcccHHHHHHhc
Q 023482 204 HMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL 238 (281)
Q Consensus 204 ~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll 238 (281)
....||+|=. =||....|++..-+
T Consensus 118 ----------~~~~fd~IDi-DPFGSPaPFlDaA~ 141 (380)
T COG1867 118 ----------LHRAFDVIDI-DPFGSPAPFLDAAL 141 (380)
T ss_pred ----------cCCCccEEec-CCCCCCchHHHHHH
Confidence 2256776543 47777777776433
No 284
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.96 E-value=0.15 Score=44.19 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=66.0
Q ss_pred HhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482 136 AAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (281)
Q Consensus 136 ~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~ 212 (281)
.+.++++.+||=+|+++|+.-.....- ..-|++||.++..=..+-.-.++..||--+.-|+..-.- - .
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~K-Y------R-- 221 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAK-Y------R-- 221 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchh-e------e--
Confidence 345779999999999999988888775 347999999865544433333333577777778764210 0 0
Q ss_pred cCCCCccEEEEcCCCcccHHHH----HHhccCCCCc
Q 023482 213 KSSSGFAKVVANIPFNISTDVI----KQLLPMGDIF 244 (281)
Q Consensus 213 ~~~~~~d~Vi~n~P~~~~~~~~----~~ll~~~~~~ 244 (281)
..-+..|+||++.+..-...++ ..+|++++.|
T Consensus 222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhf 257 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHF 257 (317)
T ss_pred eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeE
Confidence 1114679999987654333333 3777888876
No 285
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.69 E-value=0.17 Score=42.44 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=61.0
Q ss_pred CCCcccCccccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc----C--CEEEEEeCCHHHHHHHHHHhcCCC
Q 023482 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASID 187 (281)
Q Consensus 114 ~~~~~~g~~~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~ 187 (281)
.-..|.|...+..+.-.-.+-+.+-..+++.|+|+|.-.|.+++..|.. | .+|+++|+|-.-+..+... .+
T Consensus 42 ~~~twmG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p 118 (237)
T COG3510 42 YNYTWMGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VP 118 (237)
T ss_pred EEeeEecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CC
Confidence 4456778776666665555555554456789999999999999888874 5 6999999986655444333 34
Q ss_pred CeEEEEcCccccc
Q 023482 188 QLKVLQEDFVKCH 200 (281)
Q Consensus 188 ~v~~~~gD~~~~~ 200 (281)
.|.+++|+-.+..
T Consensus 119 ~i~f~egss~dpa 131 (237)
T COG3510 119 DILFIEGSSTDPA 131 (237)
T ss_pred CeEEEeCCCCCHH
Confidence 8999999987753
No 286
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.31 E-value=0.18 Score=44.64 Aligned_cols=120 Identities=10% Similarity=0.194 Sum_probs=78.1
Q ss_pred cHHHHHHHHHhc---CCCCCcccCccccCCHHHHHHHHHHh--cCCCCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCC
Q 023482 100 DYHATIKALNSK---GRFPRKSLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKD 172 (281)
Q Consensus 100 ~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s 172 (281)
.+.+++..+.+. ...+...+.|.|.++.-.+.++.-.. +--.|+.|+=+| -.-..+++++-. ..+|..||++
T Consensus 106 ~f~dll~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDID 184 (354)
T COG1568 106 AFKDLLEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDID 184 (354)
T ss_pred hHHHHHHHHHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEech
Confidence 345555544433 23344566777777766555443332 122567899998 433444444444 4599999999
Q ss_pred HHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCccc
Q 023482 173 QHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (281)
Q Consensus 173 ~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~ 230 (281)
+..+....+..++.+ |++.+.-|..+ |+++ | -...||+++.+||+...
T Consensus 185 ERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe---~------~~~kFDvfiTDPpeTi~ 234 (354)
T COG1568 185 ERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPE---D------LKRKFDVFITDPPETIK 234 (354)
T ss_pred HHHHHHHHHHHHHhCccchhheeehhcc-cChH---H------HHhhCCeeecCchhhHH
Confidence 999999988777654 68888888876 3433 1 23689999999997643
No 287
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.14 E-value=0.82 Score=39.51 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=53.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.+++++|=.|++ |.++..+++ +|.+|++++.+++..+...+..... ++.++.+|+.+..-....++.+. ...
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~--~~~ 84 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAV--ERF 84 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHH--HHh
Confidence 367899988875 555555544 4889999999988776655544332 67889999887542222222221 122
Q ss_pred CCccEEEEcCC
Q 023482 216 SGFAKVVANIP 226 (281)
Q Consensus 216 ~~~d~Vi~n~P 226 (281)
+.+|+||.+..
T Consensus 85 ~~~d~vi~~ag 95 (264)
T PRK12829 85 GGLDVLVNNAG 95 (264)
T ss_pred CCCCEEEECCC
Confidence 56899998653
No 288
>PRK08339 short chain dehydrogenase; Provisional
Probab=92.96 E-value=0.73 Score=40.31 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++++|=.|++.|. ++..+++.|++|+.++.+++-++.+.+.+... .++.++.+|+.+..-.+..++.+ ...
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~---~~~ 83 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKEL---KNI 83 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHH---Hhh
Confidence 46788888876554 44455556899999999988777666655432 37889999988754333333332 223
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 5689888774
No 289
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=92.88 E-value=0.46 Score=42.32 Aligned_cols=61 Identities=23% Similarity=0.253 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC
Q 023482 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI 186 (281)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~ 186 (281)
.+..+..+++.. ...+++.|||.-+|+|..+.+....+-+.+|+|++++.++.+.+++...
T Consensus 207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 344667777776 6678899999999999998888888999999999999999999988743
No 290
>PRK05867 short chain dehydrogenase; Provisional
Probab=92.84 E-value=0.68 Score=39.98 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++++|=.|++.|. ++..|++.|.+|+.++.+++.++.....+... +++.++.+|+.+..-....++.+. ...+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVT--AELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence 46789999976553 34444556889999999988877766665433 367888899876432222222221 2235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 86 ~id~lv~~a 94 (253)
T PRK05867 86 GIDIAVCNA 94 (253)
T ss_pred CCCEEEECC
Confidence 789999875
No 291
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=92.78 E-value=0.1 Score=46.24 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhH
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL 208 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~ 208 (281)
.+..++|+|||.|-.+..= -...++|.|++...+..++..- ...+..+|+.++|+.+.+||.
T Consensus 45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~----~~~~~~ad~l~~p~~~~s~d~ 106 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSG----GDNVCRADALKLPFREESFDA 106 (293)
T ss_pred CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccCC----CceeehhhhhcCCCCCCcccc
Confidence 4778999999999765321 2347999999999888776532 226899999999987654443
No 292
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.72 E-value=0.17 Score=42.21 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=47.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEc-CccccccccchhhHHHhhcCC
Q 023482 140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQE-DFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~g-D~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++++|||+||..|..+....+. .+.|.|||+-. +..-..++++.+ |+.+-... -.+.+. .+.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~---~ki~e~-lp~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETY---RKIFEA-LPN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHH---HHHHHh-CCC
Confidence 37899999999999999888776 45899999842 222235566666 55442111 111111 344
Q ss_pred CCccEEEEcCC
Q 023482 216 SGFAKVVANIP 226 (281)
Q Consensus 216 ~~~d~Vi~n~P 226 (281)
-..|+|++++.
T Consensus 135 r~VdvVlSDMa 145 (232)
T KOG4589|consen 135 RPVDVVLSDMA 145 (232)
T ss_pred CcccEEEeccC
Confidence 66788888754
No 293
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=92.69 E-value=0.71 Score=40.08 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=51.1
Q ss_pred EEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482 144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (281)
Q Consensus 144 ~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~ 220 (281)
+||=.|.+.|. ++..+++.|++|+.++.+++.++.+.+.+...+++.++.+|+.+.......++.+. ...+..|+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~--~~~g~id~ 79 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW--ELLGGIDA 79 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH--HhcCCCCE
Confidence 46667765443 33444556889999999998887776666544578888999876432222222221 22356899
Q ss_pred EEEcC
Q 023482 221 VVANI 225 (281)
Q Consensus 221 Vi~n~ 225 (281)
+|.|.
T Consensus 80 li~na 84 (259)
T PRK08340 80 LVWNA 84 (259)
T ss_pred EEECC
Confidence 98874
No 294
>PRK06172 short chain dehydrogenase; Provisional
Probab=92.68 E-value=0.79 Score=39.47 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.+++||=.|++. .++.. +++.|.+|+.++.+++-++.+.+.+... .++.++.+|+.+..--...++.+. ...
T Consensus 6 ~~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~ 82 (253)
T PRK06172 6 SGKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTI--AAY 82 (253)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence 467889888644 34444 4445889999999988776665555433 378899999877432222222221 123
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|+||.|.
T Consensus 83 g~id~li~~a 92 (253)
T PRK06172 83 GRLDYAFNNA 92 (253)
T ss_pred CCCCEEEECC
Confidence 5679999874
No 295
>PRK09072 short chain dehydrogenase; Provisional
Probab=92.65 E-value=0.92 Score=39.42 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
+++++|=.|++.|. ++..++++|.+|++++.+++-++.....+...+++.++.+|+.+..-....++.+ ...+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~---~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARA---REMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH---HhcCC
Confidence 35678888866443 3444555688999999998877766655533347889999988754333333333 22356
Q ss_pred ccEEEEcCC
Q 023482 218 FAKVVANIP 226 (281)
Q Consensus 218 ~d~Vi~n~P 226 (281)
.|.+|.+..
T Consensus 81 id~lv~~ag 89 (263)
T PRK09072 81 INVLINNAG 89 (263)
T ss_pred CCEEEECCC
Confidence 799998743
No 296
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.54 E-value=0.87 Score=39.43 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.++++|=.|++.|. ++..+++.|++|+.++.+++.++...+.+.. ..++.++.+|+.+..-....++.+. ..
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAE--EA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHH--HH
Confidence 46789988875443 3344455688999999998888777666543 2378889999877432222222221 22
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+..|++|.|.
T Consensus 84 ~g~id~li~~a 94 (260)
T PRK07063 84 FGPLDVLVNNA 94 (260)
T ss_pred hCCCcEEEECC
Confidence 35789999874
No 297
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.48 E-value=0.79 Score=42.83 Aligned_cols=97 Identities=19% Similarity=0.314 Sum_probs=68.5
Q ss_pred CEEEEEcCC-ccHHHHHH-HHcC-CEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482 143 DIVLEIGPG-TGSLTNVL-LNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (281)
Q Consensus 143 ~~VLDiGcG-~G~~t~~l-a~~~-~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d 219 (281)
.+||=|||| .|...... ++.+ .+|+..|.+++..+.+..... ++++.+..|+.+.+- ...++ ..+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~a---l~~li------~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDA---LVALI------KDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHH---HHHHH------hcCC
Confidence 468999995 23332222 3445 699999999998888877654 378899999888642 22232 3459
Q ss_pred EEEEcCCCcccHHHHHHhccCCCCcceEEEe
Q 023482 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLL 250 (281)
Q Consensus 220 ~Vi~n~P~~~~~~~~~~ll~~~~~~~~~~~~ 250 (281)
+||+-.|+.....+++.+++.+-..-.....
T Consensus 71 ~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 71 LVINAAPPFVDLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred EEEEeCCchhhHHHHHHHHHhCCCEEEcccC
Confidence 9999999888889999988887766444433
No 298
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.39 E-value=0.26 Score=45.48 Aligned_cols=77 Identities=17% Similarity=0.269 Sum_probs=61.1
Q ss_pred ccCCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCcc
Q 023482 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~ 197 (281)
++......=.....+.+.+|.+|+|+.|..|.-|..++.. ..++.|+|.++...+..+..+...+ .++.+++|+.
T Consensus 195 ~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~ 274 (413)
T KOG2360|consen 195 FILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFL 274 (413)
T ss_pred eEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCcccccccccc
Confidence 4444444444556667778899999999999999988874 4699999999999998888776554 7888899998
Q ss_pred cc
Q 023482 198 KC 199 (281)
Q Consensus 198 ~~ 199 (281)
..
T Consensus 275 ~t 276 (413)
T KOG2360|consen 275 NT 276 (413)
T ss_pred CC
Confidence 86
No 299
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.31 E-value=0.67 Score=41.49 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.|+.||==|.|.|. ++..+|+++++++..|+++...+...+.+.+.+++....+|+.+..--....+.+. .+-+.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk--~e~G~ 114 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVK--KEVGD 114 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHH--HhcCC
Confidence 57789998988885 56666777999999999999998888888766788889999887543222333332 34467
Q ss_pred ccEEEEcC-------CCcccHHHHHHhc
Q 023482 218 FAKVVANI-------PFNISTDVIKQLL 238 (281)
Q Consensus 218 ~d~Vi~n~-------P~~~~~~~~~~ll 238 (281)
.|++|-|- -++...+.+++..
T Consensus 115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~ 142 (300)
T KOG1201|consen 115 VDILVNNAGIVTGKKLLDCSDEEIQKTF 142 (300)
T ss_pred ceEEEeccccccCCCccCCCHHHHHHHH
Confidence 78888762 2344555555433
No 300
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.14 E-value=1 Score=38.73 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.+++||=.|++. .++.. ++++|.+|+.++.++.-.+.+...+... .++.++..|+.+.......++.+. ...
T Consensus 4 ~~k~vlItGa~~-~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 80 (258)
T PRK07890 4 KGKVVVVSGVGP-GLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALAL--ERF 80 (258)
T ss_pred CCCEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHH--HHc
Confidence 456888777644 44444 4455889999999988776666555432 378899999876432222222221 223
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|+||.|.
T Consensus 81 g~~d~vi~~a 90 (258)
T PRK07890 81 GRVDALVNNA 90 (258)
T ss_pred CCccEEEECC
Confidence 5689998874
No 301
>PLN02253 xanthoxin dehydrogenase
Probab=92.08 E-value=1 Score=39.44 Aligned_cols=82 Identities=13% Similarity=0.149 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++++|=.|++ |.++..++ +.|.+|+.++.+++..+.....+....++.++.+|+.+...-+..++.+. ...+
T Consensus 17 ~~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~--~~~g 93 (280)
T PLN02253 17 LGKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTV--DKFG 93 (280)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHH--HHhC
Confidence 45678888854 44555544 45889999999887766655555433478899999887543333333322 2235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 94 ~id~li~~A 102 (280)
T PLN02253 94 TLDIMVNNA 102 (280)
T ss_pred CCCEEEECC
Confidence 689998864
No 302
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.99 E-value=1.2 Score=38.33 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
++++||=.|++ |.++..+ ++.|.+|+.++.+++.++.....+... .++.++.+|+.+.......++.+. ...
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 86 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARID--AEH 86 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--Hhc
Confidence 56788888854 4445444 445889999999987776655555433 368899999876432222222221 223
Q ss_pred CCccEEEEcCC
Q 023482 216 SGFAKVVANIP 226 (281)
Q Consensus 216 ~~~d~Vi~n~P 226 (281)
+..|.+|.|.-
T Consensus 87 ~~id~vi~~ag 97 (256)
T PRK06124 87 GRLDILVNNVG 97 (256)
T ss_pred CCCCEEEECCC
Confidence 56789998743
No 303
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=91.99 E-value=0.7 Score=43.12 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=59.9
Q ss_pred CCEEEEEcCCccHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHhcCCC----CeEEEEcCccccccccchhhHHHhhcC
Q 023482 142 GDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~----~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
+-+|||.=+|+|.=++..+.. + .+|++-|+|+++++.++.|++.++ .+++.+.|+..+-. ..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-----------~~ 118 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-----------SR 118 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-----------HS
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-----------hc
Confidence 448999999999999888876 2 499999999999999999987553 58899999987531 13
Q ss_pred CCCccEEEEcCCCcccHHHHHHhc
Q 023482 215 SSGFAKVVANIPFNISTDVIKQLL 238 (281)
Q Consensus 215 ~~~~d~Vi~n~P~~~~~~~~~~ll 238 (281)
...||+|=-+ ||....+++...+
T Consensus 119 ~~~fD~IDlD-PfGSp~pfldsA~ 141 (377)
T PF02005_consen 119 QERFDVIDLD-PFGSPAPFLDSAL 141 (377)
T ss_dssp TT-EEEEEE---SS--HHHHHHHH
T ss_pred cccCCEEEeC-CCCCccHhHHHHH
Confidence 4678877554 7888888887443
No 304
>PRK07326 short chain dehydrogenase; Provisional
Probab=91.98 E-value=1.1 Score=38.01 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+..||=.| |+|.++..+++ .|.+|++++.++.........+....++.++.+|+.+...-...++-+. ...+
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 81 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIV--AAFG 81 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence 356889888 46666666554 4789999999987776665555433578889999876432111122111 1224
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|.||.+.
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 678888763
No 305
>PRK07024 short chain dehydrogenase; Provisional
Probab=91.91 E-value=1.2 Score=38.60 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=49.9
Q ss_pred CEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482 143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
++||=.|++ |.++..+ ++.|.+|+.++.+++.++...+.....+++.++.+|+.+..--...++.+. ...+..
T Consensus 3 ~~vlItGas-~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~--~~~g~i 79 (257)
T PRK07024 3 LKVFITGAS-SGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFI--AAHGLP 79 (257)
T ss_pred CEEEEEcCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHH--HhCCCC
Confidence 467777764 4444444 445889999999988877665554433378899999987432222222221 223557
Q ss_pred cEEEEcC
Q 023482 219 AKVVANI 225 (281)
Q Consensus 219 d~Vi~n~ 225 (281)
|++|.|.
T Consensus 80 d~lv~~a 86 (257)
T PRK07024 80 DVVIANA 86 (257)
T ss_pred CEEEECC
Confidence 9999863
No 306
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.90 E-value=1.1 Score=38.58 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.+++||=.|. +|.++..+++ .|.+|+.++.+++.++.+...+... .++.++.+|+.+...-...++.+. ...
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFE--AEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHH--Hhc
Confidence 4678998885 5555555544 5889999999988777666655543 268888999877543222233221 233
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 86 ~~~d~li~~a 95 (255)
T PRK07523 86 GPIDILVNNA 95 (255)
T ss_pred CCCCEEEECC
Confidence 5689999875
No 307
>PRK07454 short chain dehydrogenase; Provisional
Probab=91.89 E-value=1.5 Score=37.37 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
..+++|=.|+ +|.++..++ ++|.+|+.++.+++-.+...+..... .++.++.+|+.+.......++.+. ...
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELL--EQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 4567888885 455554444 45889999999987666555544332 478899999987543222233221 223
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|.+|.+.
T Consensus 82 ~~id~lv~~a 91 (241)
T PRK07454 82 GCPDVLINNA 91 (241)
T ss_pred CCCCEEEECC
Confidence 5679999865
No 308
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.85 E-value=0.51 Score=41.86 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=31.1
Q ss_pred CCEEEEEcCCccH----HHHHHHHc-------CCEEEEEeCCHHHHHHHHH
Q 023482 142 GDIVLEIGPGTGS----LTNVLLNA-------GATVLAIEKDQHMVGLVRE 181 (281)
Q Consensus 142 ~~~VLDiGcG~G~----~t~~la~~-------~~~v~gvD~s~~~l~~a~~ 181 (281)
.-+|+-+||+||- +++.+.+. ..+|+|.|+|..+++.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 5689999999997 33333332 2489999999999999973
No 309
>PRK07478 short chain dehydrogenase; Provisional
Probab=91.84 E-value=1.3 Score=38.22 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++++|=.|++.|. ++..+++.|.+|+.++.+++-++.+...+... .++.++.+|+.+..-....++.+. ...+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAV--ERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HhcC
Confidence 35678878766443 33444556889999999988777766655443 378888999877543222233221 2235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 83 ~id~li~~a 91 (254)
T PRK07478 83 GLDIAFNNA 91 (254)
T ss_pred CCCEEEECC
Confidence 789999875
No 310
>PRK06139 short chain dehydrogenase; Provisional
Probab=91.83 E-value=1 Score=41.16 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+++||=.|++.|. ++..+++.|++|+.++.+++.++...+.+...+ ++.++.+|+.+..--...++.+. ...+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAA--SFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HhcC
Confidence 45688888875443 334445568999999999988877766655433 77888888876432222233222 2236
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 84 ~iD~lVnnA 92 (330)
T PRK06139 84 RIDVWVNNV 92 (330)
T ss_pred CCCEEEECC
Confidence 789999874
No 311
>PRK07677 short chain dehydrogenase; Provisional
Probab=91.83 E-value=1.1 Score=38.71 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=50.9
Q ss_pred CEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482 143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 143 ~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
+++|=.|++.|. ++..+++.|.+|+.++.++..++.+.+.+... +++.++.+|+.+..-....++.+. ...+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQID--EKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HHhCCc
Confidence 567878875543 33444555889999999988777666555432 478889999876432222222221 223567
Q ss_pred cEEEEcC
Q 023482 219 AKVVANI 225 (281)
Q Consensus 219 d~Vi~n~ 225 (281)
|.+|.|.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 8888764
No 312
>PRK05876 short chain dehydrogenase; Provisional
Probab=91.76 E-value=1.2 Score=39.27 Aligned_cols=84 Identities=13% Similarity=0.061 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++++|=.|++.|. ++..|++.|.+|+.++.+++.++.+.+.+...+ ++.++.+|+.+..--...++.+. ...+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAF--RLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH--HHcC
Confidence 46788888876543 333444558899999999887776655554333 68888999877542222222221 2235
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|++|.|.-
T Consensus 83 ~id~li~nAg 92 (275)
T PRK05876 83 HVDVVFSNAG 92 (275)
T ss_pred CCCEEEECCC
Confidence 6799998753
No 313
>PRK06194 hypothetical protein; Provisional
Probab=91.67 E-value=1.2 Score=39.14 Aligned_cols=83 Identities=7% Similarity=0.085 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.+++||=.|.+ |.++..+ ++.|.+|+.+|.+++.++.....+... .++.++.+|+.+...-...++.+. ...
T Consensus 5 ~~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~--~~~ 81 (287)
T PRK06194 5 AGKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAAL--ERF 81 (287)
T ss_pred CCCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence 35678877754 4444444 445889999999987776665554432 368889999877532222222221 223
Q ss_pred CCccEEEEcCC
Q 023482 216 SGFAKVVANIP 226 (281)
Q Consensus 216 ~~~d~Vi~n~P 226 (281)
+..|+||.|.-
T Consensus 82 g~id~vi~~Ag 92 (287)
T PRK06194 82 GAVHLLFNNAG 92 (287)
T ss_pred CCCCEEEECCC
Confidence 56799998753
No 314
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.58 E-value=1.4 Score=37.67 Aligned_cols=83 Identities=8% Similarity=0.151 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
+++++|=.|++ |.++..+ ++.|.+|+.++.+++.++.+...+... .++.++.+|+.+....+..++.+. ...
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 80 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIA--EDF 80 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence 46788988863 3344444 345889999999987776665555433 378889999876432222222221 122
Q ss_pred CCccEEEEcCC
Q 023482 216 SGFAKVVANIP 226 (281)
Q Consensus 216 ~~~d~Vi~n~P 226 (281)
+..|.||.|.-
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 56799998753
No 315
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=91.49 E-value=1.3 Score=38.41 Aligned_cols=82 Identities=23% Similarity=0.364 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
+++++|=.|++.|. ++..+++.|.+|+.++.+++.++.+.+... .++.++.+|+.+....+..++.+. ...+.
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~ 80 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG--DHVLVVEGDVTSYADNQRAVDQTV--DAFGK 80 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHH--HhcCC
Confidence 46788988865443 334445568899999999887776655442 367888999877543333333221 23356
Q ss_pred ccEEEEcCC
Q 023482 218 FAKVVANIP 226 (281)
Q Consensus 218 ~d~Vi~n~P 226 (281)
.|++|.|.-
T Consensus 81 id~li~~ag 89 (263)
T PRK06200 81 LDCFVGNAG 89 (263)
T ss_pred CCEEEECCC
Confidence 898888743
No 316
>PRK06949 short chain dehydrogenase; Provisional
Probab=91.48 E-value=1.4 Score=37.97 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.+++||=.| |+|.++..+++ .|.+|++++.+++.++.....+... .++.++.+|+.+..-....++.+. ...
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAE--TEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--Hhc
Confidence 467888888 55555555544 4789999999998877766655432 378899999876431111111111 223
Q ss_pred CCccEEEEcCC
Q 023482 216 SGFAKVVANIP 226 (281)
Q Consensus 216 ~~~d~Vi~n~P 226 (281)
+..|+||.|..
T Consensus 85 ~~~d~li~~ag 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
Confidence 56788888643
No 317
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.36 E-value=1.5 Score=37.40 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.+++||=.|++.|. ++..+++.|.+|++++.++.-.+.+...+....++.++.+|+.+..-....++.+. ...+.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 81 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAAL--ERFGS 81 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHhCC
Confidence 35678888764332 33344455889999999987776665554433368899999877543222222221 22356
Q ss_pred ccEEEEcCC
Q 023482 218 FAKVVANIP 226 (281)
Q Consensus 218 ~d~Vi~n~P 226 (281)
+|+||.+..
T Consensus 82 ~d~vi~~ag 90 (251)
T PRK07231 82 VDILVNNAG 90 (251)
T ss_pred CCEEEECCC
Confidence 899998753
No 318
>PRK08862 short chain dehydrogenase; Provisional
Probab=91.34 E-value=1.3 Score=38.00 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++.+|=.|++.|. ++..+++.|.+|+.++.+++.++.+.+..... .++..+..|..+..--...++.+. ...+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIE--QQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence 46789999988876 55556667899999999998887776655433 356677777765432222223221 2224
Q ss_pred -CccEEEEcC
Q 023482 217 -GFAKVVANI 225 (281)
Q Consensus 217 -~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 789999875
No 319
>PRK08267 short chain dehydrogenase; Provisional
Probab=91.31 E-value=1.6 Score=37.83 Aligned_cols=82 Identities=11% Similarity=0.083 Sum_probs=50.8
Q ss_pred CEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482 143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (281)
Q Consensus 143 ~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d 219 (281)
+++|=.|++.|. ++..+++.|.+|+.++.+++.++.+..... ..++.++.+|+.+..--...++.+.. ...+..|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~-~~~~~id 79 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAA-ATGGRLD 79 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHH-HcCCCCC
Confidence 357778865432 334444558899999999988777665544 24789999999775422222221110 1146789
Q ss_pred EEEEcCC
Q 023482 220 KVVANIP 226 (281)
Q Consensus 220 ~Vi~n~P 226 (281)
+||.|.-
T Consensus 80 ~vi~~ag 86 (260)
T PRK08267 80 VLFNNAG 86 (260)
T ss_pred EEEECCC
Confidence 9998753
No 320
>PRK05866 short chain dehydrogenase; Provisional
Probab=91.30 E-value=1.4 Score=39.27 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+++||=.|++.|. ++..+++.|.+|+.++.+++.++...+.+... .++.++.+|+.+.......++.+. ...+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~~~g 116 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVE--KRIG 116 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence 35688988865443 23334455889999999988777665555432 367888999877543222222221 1235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 117 ~id~li~~A 125 (293)
T PRK05866 117 GVDILINNA 125 (293)
T ss_pred CCCEEEECC
Confidence 689999874
No 321
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.28 E-value=1.5 Score=38.97 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.+++||=.|++.|. ++..+++.|++|+.++.+++.++...+.+.....+..+.+|+.+..-....++.+. ...+.
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~ 85 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAV--ERFGG 85 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence 46788988865543 33334445889999999998877766655432355666688776432222222221 22357
Q ss_pred ccEEEEcCC
Q 023482 218 FAKVVANIP 226 (281)
Q Consensus 218 ~d~Vi~n~P 226 (281)
.|++|.|.-
T Consensus 86 id~vI~nAG 94 (296)
T PRK05872 86 IDVVVANAG 94 (296)
T ss_pred CCEEEECCC
Confidence 899998753
No 322
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=91.24 E-value=1.5 Score=37.97 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++++|=.| |+|.++..+++ .|.+|+.++.+++-++.+...+... .++.++.+|+.+..-....++.+. ...
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~--~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETL--ERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HHh
Confidence 467899888 45666666554 4889999999988777666555433 378889999887542222222221 122
Q ss_pred CCccEEEEcCC
Q 023482 216 SGFAKVVANIP 226 (281)
Q Consensus 216 ~~~d~Vi~n~P 226 (281)
+..|.||.+..
T Consensus 88 ~~id~vi~~ag 98 (259)
T PRK08213 88 GHVDILVNNAG 98 (259)
T ss_pred CCCCEEEECCC
Confidence 56799998754
No 323
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.23 E-value=1.4 Score=40.23 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+++||=.|++.|. ++..+++.|.+|+.++.+++.++...+.+... .++.++.+|+.+...-...++.+. ...+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~--~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAE--EELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH--HHCC
Confidence 45678888865443 22334556889999999988877666655433 378889999877542222222221 2235
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|++|.|.-
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 7899998753
No 324
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=91.21 E-value=1.5 Score=38.09 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++++|=.|++.|. ++..+++.|++|+.++.+++.++.+...+...+ ++.++.+|+.+..-....++.+. ...+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIE--KEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HhCC
Confidence 46788888877654 344555668899999999887777666665433 78899999876543222333221 2235
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|++|.|.-
T Consensus 87 ~id~li~~ag 96 (265)
T PRK07097 87 VIDILVNNAG 96 (265)
T ss_pred CCCEEEECCC
Confidence 6899998753
No 325
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.10 E-value=1.4 Score=33.15 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=44.1
Q ss_pred CCccHHHHHHHHc---CC-EEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC
Q 023482 150 PGTGSLTNVLLNA---GA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (281)
Q Consensus 150 cG~G~~t~~la~~---~~-~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~ 225 (281)
||.|.++..+++. +. +|+.+|.+++.++.++.. .+.++.||+.+...- .. ......+.|+...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~~~~i~gd~~~~~~l-------~~-a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----GVEVIYGDATDPEVL-------ER-AGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----TSEEEES-TTSHHHH-------HH-TTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----ccccccccchhhhHH-------hh-cCccccCEEEEcc
Confidence 6777888888764 44 899999999998888764 367999999875421 11 2224577777765
Q ss_pred C
Q 023482 226 P 226 (281)
Q Consensus 226 P 226 (281)
+
T Consensus 71 ~ 71 (116)
T PF02254_consen 71 D 71 (116)
T ss_dssp S
T ss_pred C
Confidence 5
No 326
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.06 E-value=1.8 Score=39.32 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=34.6
Q ss_pred HHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHH
Q 023482 135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE 181 (281)
Q Consensus 135 ~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~ 181 (281)
......++++||=+|+| .|.++..+++. |+ +|+++|.+++-++.+++
T Consensus 163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 33444568899988876 45555666665 66 79999999999998876
No 327
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.03 E-value=1.4 Score=33.78 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=50.3
Q ss_pred CEEEEEcCCccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEE
Q 023482 143 DIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (281)
Q Consensus 143 ~~VLDiGcG~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~V 221 (281)
.+|.|+|-|-=. .+..|+++|..|+++|+++. +.+ ..++++..|+++-.. .-....|+|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~--~g~~~v~DDitnP~~-----------~iY~~A~lI 74 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP--EGLRFVVDDITNPNI-----------SIYEGADLI 74 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc--ccceEEEccCCCccH-----------HHhhCccce
Confidence 489999876433 55677778999999999987 111 368899999887432 112456889
Q ss_pred EEc-CCCcccHHHHH
Q 023482 222 VAN-IPFNISTDVIK 235 (281)
Q Consensus 222 i~n-~P~~~~~~~~~ 235 (281)
.|- ||-...+.+++
T Consensus 75 YSiRpppEl~~~ild 89 (129)
T COG1255 75 YSIRPPPELQSAILD 89 (129)
T ss_pred eecCCCHHHHHHHHH
Confidence 985 66555555554
No 328
>PRK07035 short chain dehydrogenase; Provisional
Probab=90.99 E-value=1.6 Score=37.49 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+++||=.|++.|. ++..+++.|.+|+.++.++..++...+.+... .++.++..|+.+..-.+..++.+. ...+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIR--ERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence 45678888877654 33444556889999999987777666655433 367788888876532222222221 2235
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|++|.+..
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 6799887643
No 329
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=90.99 E-value=1.6 Score=38.17 Aligned_cols=83 Identities=13% Similarity=0.174 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++++|=.|++.|. ++..+++.|.+|+.++.+++..+...+.+... .++.++.+|+.+..-.+..++.+. ...+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQIL--EDFG 86 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 45678888865443 33444455889999999987776665555433 378889999877543222233221 2235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 87 ~id~li~~a 95 (278)
T PRK08277 87 PCDILINGA 95 (278)
T ss_pred CCCEEEECC
Confidence 789999874
No 330
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.98 E-value=0.55 Score=42.57 Aligned_cols=51 Identities=31% Similarity=0.502 Sum_probs=42.2
Q ss_pred HHHHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHhc
Q 023482 133 LAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFA 184 (281)
Q Consensus 133 l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~~~ 184 (281)
.....+.+.+.+||=+|+| +|..+...|+. |+ +|+.+|+++..++.|++ +.
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~G 214 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FG 214 (354)
T ss_pred hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hC
Confidence 4445567789999999999 57777777776 54 99999999999999998 54
No 331
>PRK05854 short chain dehydrogenase; Provisional
Probab=90.83 E-value=1.6 Score=39.33 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.+++++=.|++.|. ++..|++.|++|+.+..+++-.+.+.+.+... .++.++.+|+.+..-....++.+. ..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~--~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR--AE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH--Hh
Confidence 46788888876554 34445556899999999987766665544321 268899999987643333333322 23
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+..|++|.|.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 46789998764
No 332
>PRK07814 short chain dehydrogenase; Provisional
Probab=90.83 E-value=1.7 Score=37.73 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
+++++|=.|. +|.++..++ ++|.+|++++.+++-++...+.+... .++.++.+|+.+...-...++.+. ...
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAV--EAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 4678888885 455555544 45889999999987776655554332 378888999877543322333321 122
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|+||.+.
T Consensus 86 ~~id~vi~~A 95 (263)
T PRK07814 86 GRLDIVVNNV 95 (263)
T ss_pred CCCCEEEECC
Confidence 5689998864
No 333
>PRK08589 short chain dehydrogenase; Validated
Probab=90.79 E-value=1.8 Score=37.91 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++++|=.|++.|. ++..+++.|.+|+.++.+ +.++...+.+... .++.++.+|+.+..-....++.+. ...+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g 81 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIK--EQFG 81 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH--HHcC
Confidence 46788888876553 344455568999999999 4444444444332 378889999876532222222221 2335
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 82 ~id~li~~A 90 (272)
T PRK08589 82 RVDVLFNNA 90 (272)
T ss_pred CcCEEEECC
Confidence 689999874
No 334
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=90.75 E-value=0.62 Score=37.13 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=51.4
Q ss_pred EEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCC---c---ccH----
Q 023482 165 TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF---N---IST---- 231 (281)
Q Consensus 165 ~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~---~---~~~---- 231 (281)
+|+|+|+.+++++.+++++.+. +++++++.+=.+++-. .+.+..|+++-|+=| . +.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~----------i~~~~v~~~iFNLGYLPggDk~i~T~~~T 70 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY----------IPEGPVDAAIFNLGYLPGGDKSITTKPET 70 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------------S--EEEEEEEESB-CTS-TTSB--HHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh----------CccCCcCEEEEECCcCCCCCCCCCcCcHH
Confidence 6999999999999999999866 3799999887776421 122478999999644 1 111
Q ss_pred -----HHHHHhccCCCCcceEEEeehhhH
Q 023482 232 -----DVIKQLLPMGDIFSEVVLLLQEET 255 (281)
Q Consensus 232 -----~~~~~ll~~~~~~~~~~~~~~~~~ 255 (281)
.....++.++|.+..+.+.-+.++
T Consensus 71 Tl~Al~~al~lL~~gG~i~iv~Y~GH~gG 99 (140)
T PF06962_consen 71 TLKALEAALELLKPGGIITIVVYPGHPGG 99 (140)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE--STCHH
T ss_pred HHHHHHHHHHhhccCCEEEEEEeCCCCCC
Confidence 222367788888766666544433
No 335
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.74 E-value=1.9 Score=36.59 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+++||=.|++ |.++..++ +.|.+|++++.+++-.+.+.+.....+++.++.+|+.+..-....++.+. ...+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAA--KVLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHH--HHhC
Confidence 35789999975 44444443 45889999999988777665554444578889999877432222222111 1124
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|.++.+..
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 5688887653
No 336
>PRK08226 short chain dehydrogenase; Provisional
Probab=90.74 E-value=1.8 Score=37.43 Aligned_cols=82 Identities=12% Similarity=0.121 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++++|=.|+. |.++..+++ .|.+|+.++.++...+.+.+......++.++.+|+.+..-.+..++.+. ...+
T Consensus 5 ~~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~ 81 (263)
T PRK08226 5 TGKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAK--EKEG 81 (263)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 45688888865 445555544 5889999999886544443332222477888999877543232333222 2235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|.+|.|.
T Consensus 82 ~id~vi~~a 90 (263)
T PRK08226 82 RIDILVNNA 90 (263)
T ss_pred CCCEEEECC
Confidence 678888864
No 337
>PRK08643 acetoin reductase; Validated
Probab=90.65 E-value=1.8 Score=37.33 Aligned_cols=81 Identities=11% Similarity=0.176 Sum_probs=51.4
Q ss_pred CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
++++|=.|+.. .++..+ ++.|.+|+.++.+++..+.+...+... .++.++.+|+.+..--...++.+. ...+
T Consensus 2 ~k~~lItGas~-giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~ 78 (256)
T PRK08643 2 SKVALVTGAGQ-GIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVV--DTFG 78 (256)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 35677777544 444444 445889999999988777666655433 377888999877543222333322 2235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 79 ~id~vi~~a 87 (256)
T PRK08643 79 DLNVVVNNA 87 (256)
T ss_pred CCCEEEECC
Confidence 689998875
No 338
>PRK06138 short chain dehydrogenase; Provisional
Probab=90.64 E-value=2 Score=36.79 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
+++++|=.|+. |.++..+ ++.|.+|++++.+++.............++.++.+|+.+.......++.+. ...+
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~--~~~~ 80 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVA--ARWG 80 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence 35688888874 4444444 445889999999987766655544422478899999877543222222221 2235
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|+||.+..
T Consensus 81 ~id~vi~~ag 90 (252)
T PRK06138 81 RLDVLVNNAG 90 (252)
T ss_pred CCCEEEECCC
Confidence 7899998654
No 339
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.51 E-value=1.4 Score=38.32 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCc----cH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~----G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++.+|=.|.+. |. ++..+++.|++|+.++.++...+.+.+.....+.+.++.+|+.+..--...++.+. ...
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIA--EEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHH--HHc
Confidence 467899999764 32 34445556889999998865433333222222345577888877543334444442 223
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 87 g~ld~lv~nA 96 (258)
T PRK07533 87 GRLDFLLHSI 96 (258)
T ss_pred CCCCEEEEcC
Confidence 6789999874
No 340
>PRK07904 short chain dehydrogenase; Provisional
Probab=90.49 E-value=1.7 Score=37.80 Aligned_cols=81 Identities=7% Similarity=0.107 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcC-CEEEEEeCCHHH-HHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhh
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAG-ATVLAIEKDQHM-VGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERR 212 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~-~~v~gvD~s~~~-l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~ 212 (281)
.+++||=.|++.| ++..++ +.+ .+|+.++.+++- ++.+.+.+... .+++++.+|+.+..-....++.+
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~--- 82 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAA--- 82 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHH---
Confidence 5678999998554 444444 444 799999998764 55554444332 27899999987643222222222
Q ss_pred cCCCCccEEEEcC
Q 023482 213 KSSSGFAKVVANI 225 (281)
Q Consensus 213 ~~~~~~d~Vi~n~ 225 (281)
...+..|++|.|.
T Consensus 83 ~~~g~id~li~~a 95 (253)
T PRK07904 83 FAGGDVDVAIVAF 95 (253)
T ss_pred HhcCCCCEEEEee
Confidence 2235789888764
No 341
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.42 E-value=3.8 Score=37.67 Aligned_cols=45 Identities=24% Similarity=0.466 Sum_probs=36.9
Q ss_pred CCCCEEEEEcCC-ccHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHhc
Q 023482 140 QEGDIVLEIGPG-TGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA 184 (281)
Q Consensus 140 ~~~~~VLDiGcG-~G~~t~~la~~-~-~~v~gvD~s~~~l~~a~~~~~ 184 (281)
.++.+|+=+||| .|.++..+++. | .+|+++|.+++-++.|++...
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g 214 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG 214 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC
Confidence 345599999999 57787777776 4 499999999999999998654
No 342
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=90.33 E-value=1.1 Score=39.26 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHc-CCEEEEEeCCHHHH
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMV 176 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~-~~~v~gvD~s~~~l 176 (281)
....|||+|+|+|..++.++.. +++|+--|.-....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~ 122 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVE 122 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHH
Confidence 3567999999999888888875 67888877654433
No 343
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=90.29 E-value=2.1 Score=36.98 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-CCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++++|=.|++.|. ++..+++.|.+|+.++.++... .+...+.. ..++.++.+|+.+..-....++.+. ...+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 83 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVH-EVAAELRAAGGEALALTADLETYAGAQAAMAAAV--EAFG 83 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHH-HHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHH--HHcC
Confidence 45688888865443 3344455688999999986433 33333332 2367888899876432222222221 2235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 84 ~id~lv~nA 92 (260)
T PRK12823 84 RIDVLINNV 92 (260)
T ss_pred CCeEEEECC
Confidence 689999875
No 344
>PRK05650 short chain dehydrogenase; Provisional
Probab=90.28 E-value=2 Score=37.51 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=49.0
Q ss_pred EEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482 144 IVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
+||=.|+ +|.++..+ ++.|.+|+.++.+++-++.+...+... .++.++.+|+.+....+..++.+. ...+.+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~--~~~~~i 78 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACE--EKWGGI 78 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHcCCC
Confidence 5676675 44444444 445889999999987776655544433 378889999876542222222222 223568
Q ss_pred cEEEEcC
Q 023482 219 AKVVANI 225 (281)
Q Consensus 219 d~Vi~n~ 225 (281)
|++|.|.
T Consensus 79 d~lI~~a 85 (270)
T PRK05650 79 DVIVNNA 85 (270)
T ss_pred CEEEECC
Confidence 9999874
No 345
>PRK09242 tropinone reductase; Provisional
Probab=90.27 E-value=2 Score=37.10 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.++++|=.|++.|. ++..+++.|.+|+.++.+++.++.....+... .++.++.+|+.+..-....++.+. ..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE--DH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH--HH
Confidence 46788888875442 33334445889999999988777666555432 378888999876432222222221 23
Q ss_pred CCCccEEEEcCC
Q 023482 215 SSGFAKVVANIP 226 (281)
Q Consensus 215 ~~~~d~Vi~n~P 226 (281)
.+..|+||.+.-
T Consensus 86 ~g~id~li~~ag 97 (257)
T PRK09242 86 WDGLHILVNNAG 97 (257)
T ss_pred cCCCCEEEECCC
Confidence 367899988754
No 346
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.23 E-value=2 Score=36.98 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++++|=.|+ +|.++..+ ++.|.+|+.++.+++..+.+.+.+...+ ++.++.+|+.+....+..++.+. ...
T Consensus 6 ~~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 82 (262)
T PRK13394 6 NGKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVA--ERF 82 (262)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence 4567886665 34444444 4458899999999977766666554333 67889999887543222222221 123
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|+||.+.
T Consensus 83 ~~~d~vi~~a 92 (262)
T PRK13394 83 GSVDILVSNA 92 (262)
T ss_pred CCCCEEEECC
Confidence 5678888864
No 347
>PRK07062 short chain dehydrogenase; Provisional
Probab=90.13 E-value=1.9 Score=37.40 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.++++|=.|++.|. ++..+++.|++|+.++.+++-++.+.+.+... .++.++.+|+.+..-....++.+. ..
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~ 84 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVE--AR 84 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHH--Hh
Confidence 46789999976553 33444456889999999988777665554322 267788888877542222222221 22
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+..|++|.|.
T Consensus 85 ~g~id~li~~A 95 (265)
T PRK07062 85 FGGVDMLVNNA 95 (265)
T ss_pred cCCCCEEEECC
Confidence 35689998875
No 348
>PRK07791 short chain dehydrogenase; Provisional
Probab=90.10 E-value=2 Score=38.03 Aligned_cols=83 Identities=16% Similarity=0.234 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCH---------HHHHHHHHHhcCC-CCeEEEEcCccccccccchhh
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ---------HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLS 207 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~---------~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d 207 (281)
.++++|=.|++.|. ++..+++.|++|+.++.+. +.++.+...+... .++.++.+|+.+..-....++
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~ 84 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVD 84 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence 56789999977664 3344555688999988764 4444444444332 377888889877543222233
Q ss_pred HHHhhcCCCCccEEEEcC
Q 023482 208 LFERRKSSSGFAKVVANI 225 (281)
Q Consensus 208 ~v~~~~~~~~~d~Vi~n~ 225 (281)
.+. ...+..|++|.|.
T Consensus 85 ~~~--~~~g~id~lv~nA 100 (286)
T PRK07791 85 AAV--ETFGGLDVLVNNA 100 (286)
T ss_pred HHH--HhcCCCCEEEECC
Confidence 221 2336789999874
No 349
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=90.10 E-value=4.6 Score=34.56 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCCccH--HHHHHHH--c--CCEEEEEeCCHHHHHHHHHHhcCCC---CeEEEEcCc
Q 023482 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGS--LTNVLLN--A--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (281)
Q Consensus 126 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~--~t~~la~--~--~~~v~gvD~s~~~l~~a~~~~~~~~---~v~~~~gD~ 196 (281)
.|...+++.....-...+.++|+.|+.|. .++.|+. + |++++.|-.++.-+...++.+...+ .++|+.||.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 45677777777766677899999776543 3455443 2 7899999999888777777776443 468888885
Q ss_pred c
Q 023482 197 V 197 (281)
Q Consensus 197 ~ 197 (281)
.
T Consensus 106 ~ 106 (218)
T PF07279_consen 106 P 106 (218)
T ss_pred H
Confidence 3
No 350
>PRK08303 short chain dehydrogenase; Provisional
Probab=90.05 E-value=1.7 Score=39.14 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCH----------HHHHHHHHHhcCCC-CeEEEEcCccccccccchh
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ----------HMVGLVRERFASID-QLKVLQEDFVKCHIRSHML 206 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~----------~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~ 206 (281)
.++++|-.|++.|. ++..+++.|++|+.++.+. +.++.+.+.+...+ ++.++.+|+.+..-....+
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 86 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV 86 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 46789999976654 3344455588999998873 33444433443333 6778899988754333333
Q ss_pred hHHHhhcCCCCccEEEEcC
Q 023482 207 SLFERRKSSSGFAKVVANI 225 (281)
Q Consensus 207 d~v~~~~~~~~~d~Vi~n~ 225 (281)
+.+. ...+..|++|.|.
T Consensus 87 ~~~~--~~~g~iDilVnnA 103 (305)
T PRK08303 87 ERID--REQGRLDILVNDI 103 (305)
T ss_pred HHHH--HHcCCccEEEECC
Confidence 3332 2235789988876
No 351
>PRK07774 short chain dehydrogenase; Provisional
Probab=89.92 E-value=2.2 Score=36.52 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++++|=.| |+|.++..+++ .|.+|+.++.++...+.....+... .++.++.+|+.+..-....+..+. ...
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATV--SAF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence 456788888 45555655554 5889999999987665555544322 367788899877542222222221 122
Q ss_pred CCccEEEEcCC
Q 023482 216 SGFAKVVANIP 226 (281)
Q Consensus 216 ~~~d~Vi~n~P 226 (281)
+..|+||.|..
T Consensus 82 ~~id~vi~~ag 92 (250)
T PRK07774 82 GGIDYLVNNAA 92 (250)
T ss_pred CCCCEEEECCC
Confidence 46899998654
No 352
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=89.84 E-value=1.8 Score=37.49 Aligned_cols=81 Identities=14% Similarity=0.241 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++++|-.|++.|. ++..+++.|++|+.++.++. +.+.+..... .++.++.+|+.+..-....++.+. ...+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g 82 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAV--EVMG 82 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHH--HHcC
Confidence 46789999976654 33444556889999887642 2222222222 378889999877543332333221 2335
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 83 ~iD~lv~~a 91 (251)
T PRK12481 83 HIDILINNA 91 (251)
T ss_pred CCCEEEECC
Confidence 789999874
No 353
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=89.79 E-value=2.6 Score=35.92 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.+++||=.|+ +|.++..+ +++|.+|++++.++..+..+...+... .++.++.+|+.+..-....++.+. ...
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 81 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGV--EDF 81 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHh
Confidence 3567887775 45555554 445889999999976665554444332 368899999876432222222221 122
Q ss_pred CCccEEEEcCC
Q 023482 216 SGFAKVVANIP 226 (281)
Q Consensus 216 ~~~d~Vi~n~P 226 (281)
+.+|.||.+..
T Consensus 82 ~~~d~vi~~ag 92 (251)
T PRK12826 82 GRLDILVANAG 92 (251)
T ss_pred CCCCEEEECCC
Confidence 46898888753
No 354
>PRK06196 oxidoreductase; Provisional
Probab=89.76 E-value=2.2 Score=38.30 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+++||=.|++ |.++..++ +.|.+|++++.+++..+.+...+. ++.++.+|+.+..--...++.+. ...+
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~---~v~~~~~Dl~d~~~v~~~~~~~~--~~~~ 98 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGID---GVEVVMLDLADLESVRAFAERFL--DSGR 98 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh---hCeEEEccCCCHHHHHHHHHHHH--hcCC
Confidence 45788988865 44555544 458899999999877665554443 47888999887543222222221 2235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 99 ~iD~li~nA 107 (315)
T PRK06196 99 RIDILINNA 107 (315)
T ss_pred CCCEEEECC
Confidence 689999875
No 355
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.52 E-value=1 Score=42.00 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=40.5
Q ss_pred HHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Q 023482 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (281)
Q Consensus 134 ~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~ 184 (281)
.+.+++.++++||-|.+|-......+...-.+|++||+||..+...+.+..
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 455677899999999877666666665556799999999999988876655
No 356
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=89.50 E-value=2.7 Score=36.18 Aligned_cols=83 Identities=12% Similarity=0.122 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++++|=.|.+. .++..+ ++.|.+|+.++.+++.+......+... .++.++.+|+.+..--...++.+. ...
T Consensus 8 ~~k~~lItGas~-giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 84 (254)
T PRK08085 8 AGKNILITGSAQ-GIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIE--KDI 84 (254)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHH--Hhc
Confidence 466888888554 444444 445889999999987776665555433 367788888876532222222221 223
Q ss_pred CCccEEEEcCC
Q 023482 216 SGFAKVVANIP 226 (281)
Q Consensus 216 ~~~d~Vi~n~P 226 (281)
+.+|++|.|.-
T Consensus 85 ~~id~vi~~ag 95 (254)
T PRK08085 85 GPIDVLINNAG 95 (254)
T ss_pred CCCCEEEECCC
Confidence 56899998753
No 357
>PRK08265 short chain dehydrogenase; Provisional
Probab=89.49 E-value=2.5 Score=36.73 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.++++|=.|++.|. ++..+++.|++|+.++.+++-++...+... .++.++.+|+.+..-....++.+. ...+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g~ 80 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG--ERARFIATDITDDAAIERAVATVV--ARFGR 80 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CeeEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence 45688888864432 334444558899999999876655544332 368889999877432222222221 22356
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
.|++|.|.
T Consensus 81 id~lv~~a 88 (261)
T PRK08265 81 VDILVNLA 88 (261)
T ss_pred CCEEEECC
Confidence 89998874
No 358
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=89.38 E-value=2.7 Score=36.27 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+++||=.|++.|. ++..+++.|.+++.++.+...++.+...+... .++.++.+|+.+..-....+..+. ...+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAL--SKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence 46789999965543 33344556889999999888777665544432 367888899876432111111111 2235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|.+|.+.
T Consensus 88 ~~d~li~~a 96 (255)
T PRK06113 88 KVDILVNNA 96 (255)
T ss_pred CCCEEEECC
Confidence 689998864
No 359
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.23 E-value=2.7 Score=35.80 Aligned_cols=81 Identities=11% Similarity=0.158 Sum_probs=50.4
Q ss_pred CCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
++++|=.|+ +|.++..+++ .|.+|+.++.++.-.+.....+... .++.++.+|+.+..-....++.+. ...+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 83 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLK--NELG 83 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 467888884 6666666544 4889999999987666554444333 378889999876432222222211 1224
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|.||.+.
T Consensus 84 ~id~vi~~a 92 (239)
T PRK07666 84 SIDILINNA 92 (239)
T ss_pred CccEEEEcC
Confidence 678888864
No 360
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=89.14 E-value=3.3 Score=35.35 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=51.7
Q ss_pred CCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
++++|=.|++ |.++..++ +.|.+|+.++.++.....+...+... .++.++.+|+.+.......++.+. ...+
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~ 79 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAE--QALG 79 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence 5678888854 44454444 45789999999988776665554433 378899999876543222222221 1224
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|++|.+..
T Consensus 80 ~~d~vi~~ag 89 (250)
T TIGR03206 80 PVDVLVNNAG 89 (250)
T ss_pred CCCEEEECCC
Confidence 6788888764
No 361
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=89.12 E-value=3.1 Score=37.41 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.+++||=.|+.. .++.. |++.|.+|+.++.++.-.+.+.+.+... .++.++.+|+.+..--...++.+. ...
T Consensus 5 ~~k~vlVTGas~-gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~ 81 (322)
T PRK07453 5 AKGTVIITGASS-GVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFR--ALG 81 (322)
T ss_pred CCCEEEEEcCCC-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHH--HhC
Confidence 456788888644 34444 4445889999999987776665554322 378889999877543222222221 223
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 82 ~~iD~li~nA 91 (322)
T PRK07453 82 KPLDALVCNA 91 (322)
T ss_pred CCccEEEECC
Confidence 4689999874
No 362
>PRK12939 short chain dehydrogenase; Provisional
Probab=89.03 E-value=3.2 Score=35.34 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
+++++|=.|+ +|.++..+++ .|.+|++++.+++-++...+.+... .++.++.+|+.+.......++.+. ...
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAA--AAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 4577887775 4555555544 4889999999988776665554332 378999999877442222222221 122
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|+||.+.
T Consensus 83 ~~id~vi~~a 92 (250)
T PRK12939 83 GGLDGLVNNA 92 (250)
T ss_pred CCCCEEEECC
Confidence 5689998764
No 363
>PRK06181 short chain dehydrogenase; Provisional
Probab=88.96 E-value=3.1 Score=35.96 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=48.8
Q ss_pred CEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.+||=.|+ +|.++..+ ++.+.+|++++.++.-.+.+...+... .++.++.+|+.+..-....++.+. ...+.
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~ 78 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAV--ARFGG 78 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence 35777774 44455544 445789999999987766555544433 378889999877542222222221 12246
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
.|+||.+.
T Consensus 79 id~vi~~a 86 (263)
T PRK06181 79 IDILVNNA 86 (263)
T ss_pred CCEEEECC
Confidence 78888764
No 364
>PRK06125 short chain dehydrogenase; Provisional
Probab=88.88 E-value=3.1 Score=35.96 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.++++|=.|++.| ++.. +++.|++|++++.+++.++.+...+... .++.++.+|+.+..-.. .++ ..
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~---~~~---~~ 78 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEARE---QLA---AE 78 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHH---HHH---HH
Confidence 4578888886544 4444 4455889999999988777666555432 36788888887632111 112 12
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+..|++|.|.
T Consensus 79 ~g~id~lv~~a 89 (259)
T PRK06125 79 AGDIDILVNNA 89 (259)
T ss_pred hCCCCEEEECC
Confidence 35689888874
No 365
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=88.78 E-value=2.7 Score=35.91 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=49.4
Q ss_pred CEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
++||=.| |+|.++..++. +|.+|++++.++...+.+....... .++.++.+|+.+..-....++.+. ...+.
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 78 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAA--AEFGG 78 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HhcCC
Confidence 3566666 55666666654 4789999999987776665544332 378899999977432111121211 22345
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
.|.||.+.
T Consensus 79 ~d~vi~~a 86 (255)
T TIGR01963 79 LDILVNNA 86 (255)
T ss_pred CCEEEECC
Confidence 78888764
No 366
>PRK06720 hypothetical protein; Provisional
Probab=88.61 E-value=4.3 Score=33.27 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++.+|-.|.+.|. ++..+++.|.+|+.+|.+++.++.+.+.+... ..+.++..|..+..--...++.+. ...+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~--~~~G 92 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITL--NAFS 92 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence 46678888876543 44445566889999999988776655544332 366777888866432222222221 2336
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|.+|.|.-
T Consensus 93 ~iDilVnnAG 102 (169)
T PRK06720 93 RIDMLFQNAG 102 (169)
T ss_pred CCCEEEECCC
Confidence 7899998854
No 367
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=88.61 E-value=2.7 Score=36.30 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+++||=.|++.|. ++..+++.|++|+.++.++ -.+.+.+..... .++.++.+|+.+.......++.+. ...+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~~g 90 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEAL--EEFG 90 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence 46789999986654 3344455688999998883 334444443322 478899999887543222222221 2235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|.+|.|.
T Consensus 91 ~id~li~~a 99 (258)
T PRK06935 91 KIDILVNNA 99 (258)
T ss_pred CCCEEEECC
Confidence 689999864
No 368
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=88.59 E-value=0.36 Score=42.83 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=38.1
Q ss_pred HHHHHHHHHh--c-CCCCCEEEEEcCCccHHHHHHHHcC-CEEEEEeCCHHHHH
Q 023482 128 EINDQLAAAA--A-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVG 177 (281)
Q Consensus 128 ~~~~~l~~~l--~-~~~~~~VLDiGcG~G~~t~~la~~~-~~v~gvD~s~~~l~ 177 (281)
.....+.+.+ . ...+++|||+|||.|.-.+.....+ ..+...|.+.+.++
T Consensus 100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 3455555443 1 2368899999999999998888876 68999999988873
No 369
>PRK07576 short chain dehydrogenase; Provisional
Probab=88.58 E-value=3.2 Score=36.15 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
+++++|=.|. +|.++..+ +..|++|++++.+++-++...+.+... .++.++.+|+.+..-....++.+. ...
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~--~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIA--DEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHH--HHc
Confidence 4678888885 44445444 445889999999987766555444332 367788899876432222222211 223
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 5679998764
No 370
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.55 E-value=2.8 Score=36.83 Aligned_cols=83 Identities=19% Similarity=0.138 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCc----cH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~----G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
+++.+|=.|++. |. ++..|++.|++|+.++.++...+..++.....+...++.+|+.+..--+..++.+. ...
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~--~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALE--KKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHH--HHh
Confidence 467899999754 33 45556667899999988764433333322222333467888877543333333332 233
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 84 g~iD~lVnnA 93 (271)
T PRK06505 84 GKLDFVVHAI 93 (271)
T ss_pred CCCCEEEECC
Confidence 6789999874
No 371
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.44 E-value=2.9 Score=36.64 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCc----cH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~----G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++++|=.|.+. |. ++..+++.|++|+.++.+....+.+.+.....+.+.++.+|+.+..--+..++.+. ...
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELG--KVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHH--hhc
Confidence 467888889754 33 45666667889999888743333333322222456678888877543333333322 234
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 83 g~iD~linnA 92 (262)
T PRK07984 83 PKFDGFVHSI 92 (262)
T ss_pred CCCCEEEECC
Confidence 6789999885
No 372
>PRK07831 short chain dehydrogenase; Provisional
Probab=88.24 E-value=3.7 Score=35.51 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=52.6
Q ss_pred CCCEEEEEcC-C--ccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-C--CCeEEEEcCccccccccchhhHHHhhc
Q 023482 141 EGDIVLEIGP-G--TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 141 ~~~~VLDiGc-G--~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~--~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
.++++|=.|. | .|. ++..+++.|.+|+.+|.++.-++.+.+.+.. . .++.++.+|+.+..--+..++.+. .
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~ 93 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV--E 93 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH--H
Confidence 4578888885 3 444 3444555688999999998877766665543 2 368889999876432222222221 2
Q ss_pred CCCCccEEEEcCC
Q 023482 214 SSSGFAKVVANIP 226 (281)
Q Consensus 214 ~~~~~d~Vi~n~P 226 (281)
..+..|++|.|.-
T Consensus 94 ~~g~id~li~~ag 106 (262)
T PRK07831 94 RLGRLDVLVNNAG 106 (262)
T ss_pred HcCCCCEEEECCC
Confidence 2356899988753
No 373
>PRK06197 short chain dehydrogenase; Provisional
Probab=88.06 E-value=3.4 Score=36.81 Aligned_cols=82 Identities=11% Similarity=0.110 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHhhc
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
.+++||=.|+. |.++..+ ++.|.+|+.+..+++..+.+.+.+.. ..++.++.+|+.+..--...++.+. .
T Consensus 15 ~~k~vlItGas-~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~ 91 (306)
T PRK06197 15 SGRVAVVTGAN-TGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR--A 91 (306)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH--h
Confidence 56788888854 4444444 44588999999988776655544432 1368889999887643322233221 1
Q ss_pred CCCCccEEEEcC
Q 023482 214 SSSGFAKVVANI 225 (281)
Q Consensus 214 ~~~~~d~Vi~n~ 225 (281)
..+..|++|.|.
T Consensus 92 ~~~~iD~li~nA 103 (306)
T PRK06197 92 AYPRIDLLINNA 103 (306)
T ss_pred hCCCCCEEEECC
Confidence 235689988864
No 374
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.00 E-value=2.9 Score=37.46 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC-HHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s-~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++++|=.|++.|. ++..+++.|++|+.+|.+ ....+.+.+.+... +++.++.+|+.+..-....++.+. . .
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~--~-~ 87 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAV--G-L 87 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH--H-h
Confidence 46788988877654 444555668899999874 33444444434332 378889999877543222233221 2 4
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 88 g~iD~li~nA 97 (306)
T PRK07792 88 GGLDIVVNNA 97 (306)
T ss_pred CCCCEEEECC
Confidence 6789999874
No 375
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.99 E-value=3.1 Score=36.72 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=48.5
Q ss_pred CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++.+|=.|++ .|. ++..+++.|++|+.++.+....+.+.+.....+.-.++.+|+.+..--...++.+. ...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~--~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLK--KDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHH--HHc
Confidence 46788999974 443 34445566889999998854322222222222211567888877653333344332 234
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 82 g~iDilVnnA 91 (274)
T PRK08415 82 GKIDFIVHSV 91 (274)
T ss_pred CCCCEEEECC
Confidence 6789999874
No 376
>PRK05717 oxidoreductase; Validated
Probab=87.95 E-value=3.5 Score=35.52 Aligned_cols=82 Identities=12% Similarity=0.125 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+++||=.|.+ |.++..+ ++.|++|+.++.++.-.+...+... .++.++.+|+.+..-....++.+. ...+
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~--~~~g 83 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALG--ENAWFIAMDVADEAQVAAGVAEVL--GQFG 83 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcC--CceEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence 46788888764 4444444 4458899999988765544433332 368889999887532222222221 2235
Q ss_pred CccEEEEcCCC
Q 023482 217 GFAKVVANIPF 227 (281)
Q Consensus 217 ~~d~Vi~n~P~ 227 (281)
.+|++|.|..+
T Consensus 84 ~id~li~~ag~ 94 (255)
T PRK05717 84 RLDALVCNAAI 94 (255)
T ss_pred CCCEEEECCCc
Confidence 68999987543
No 377
>PRK06500 short chain dehydrogenase; Provisional
Probab=87.91 E-value=4.2 Score=34.64 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
++++||=.|++. .++.. +++.|.+|++++.+++.++...+... .++.++++|..+.......++.+. ...+
T Consensus 5 ~~k~vlItGasg-~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 79 (249)
T PRK06500 5 QGKTALITGGTS-GIGLETARQFLAEGARVAITGRDPASLEAARAELG--ESALVIRADAGDVAAQKALAQALA--EAFG 79 (249)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHH--HHhC
Confidence 356788777653 34444 44558899999999876665544432 367788888876542222223222 2235
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|+||.|..
T Consensus 80 ~id~vi~~ag 89 (249)
T PRK06500 80 RLDAVFINAG 89 (249)
T ss_pred CCCEEEECCC
Confidence 6899998753
No 378
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=87.48 E-value=3.6 Score=35.69 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
+++++|=.|++.|. ++..+++.|.+|+.++.+++.++...... ..++.++.+|+.+..-.+..++.+. ...+.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~ 79 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH--GDAVVGVEGDVRSLDDHKEAVARCV--AAFGK 79 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCceEEEEeccCCHHHHHHHHHHHH--HHhCC
Confidence 45688888875442 33444456889999999987666554322 1367888889876432222222221 22356
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
.|++|.|.
T Consensus 80 id~li~~A 87 (262)
T TIGR03325 80 IDCLIPNA 87 (262)
T ss_pred CCEEEECC
Confidence 78888874
No 379
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.46 E-value=3.4 Score=35.98 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=48.4
Q ss_pred CCCEEEEEcC-CccHHH----HHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGP-GTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGc-G~G~~t----~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++.+|=.|+ |++.++ ..+++.|++|+....+....+.+++.....+....+.+|+.+..--...++.+. ...
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~ 82 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLG--KHW 82 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHH--HHh
Confidence 4678898996 333344 444456889988876544334444333332344577888877543333333332 234
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 83 g~iD~lVnnA 92 (261)
T PRK08690 83 DGLDGLVHSI 92 (261)
T ss_pred CCCcEEEECC
Confidence 6789999885
No 380
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=87.43 E-value=0.85 Score=39.00 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=43.1
Q ss_pred CEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEE
Q 023482 143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi 222 (281)
-++|||||=+......-. .-.+|+.||+++. .-.+.+.|+.+.|++. .+.+.||+|.
T Consensus 53 lrlLEVGals~~N~~s~~-~~fdvt~IDLns~-------------~~~I~qqDFm~rplp~---------~~~e~FdvIs 109 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS-GWFDVTRIDLNSQ-------------HPGILQQDFMERPLPK---------NESEKFDVIS 109 (219)
T ss_pred ceEEeecccCCCCccccc-CceeeEEeecCCC-------------CCCceeeccccCCCCC---------CcccceeEEE
Confidence 489999987655333211 1237999999861 2358899999988754 3457899998
Q ss_pred EcCCCc
Q 023482 223 ANIPFN 228 (281)
Q Consensus 223 ~n~P~~ 228 (281)
..+-.+
T Consensus 110 ~SLVLN 115 (219)
T PF11968_consen 110 LSLVLN 115 (219)
T ss_pred EEEEEe
Confidence 865443
No 381
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.39 E-value=0.65 Score=43.08 Aligned_cols=92 Identities=11% Similarity=0.182 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH----------hcC-CCCeEE
Q 023482 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER----------FAS-IDQLKV 191 (281)
Q Consensus 125 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~--~~v~gvD~s~~~l~~a~~~----------~~~-~~~v~~ 191 (281)
+..+....+.+.+.+.+++.-.|+|.|.|.....++..+ .+=+|+|+....-+.|..+ +.+ .+.++.
T Consensus 176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET 255 (419)
T ss_pred hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence 345567778888899999999999999999888887763 3678898866555544332 222 236889
Q ss_pred EEcCccccccccchhhHHHhhcCCCCccEEEEcC
Q 023482 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (281)
Q Consensus 192 ~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~ 225 (281)
++|++..-... +.+ ....++|+.|.
T Consensus 256 i~gsf~~~~~v----~eI-----~~eatvi~vNN 280 (419)
T KOG3924|consen 256 IHGSFLDPKRV----TEI-----QTEATVIFVNN 280 (419)
T ss_pred cccccCCHHHH----HHH-----hhcceEEEEec
Confidence 99998765432 122 24567777753
No 382
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=87.36 E-value=4.5 Score=34.84 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++++|=.|+ +|.++..++ ++|.+|+.++.+.+.++....... .++.++.+|+.+..-....++.+. ...+
T Consensus 5 ~~~~vlItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 79 (257)
T PRK07067 5 QGKVALLTGA-ASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG--PAAIAVSLDVTRQDSIDRIVAAAV--ERFG 79 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence 3567888884 445555554 458899999999887776655443 368888999876543222233221 2235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.+.
T Consensus 80 ~id~li~~a 88 (257)
T PRK07067 80 GIDILFNNA 88 (257)
T ss_pred CCCEEEECC
Confidence 678888764
No 383
>PRK05993 short chain dehydrogenase; Provisional
Probab=87.33 E-value=4.1 Score=35.73 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=47.5
Q ss_pred CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
+++||=.|++ |.++..+ ++.|.+|++++.+++.++.... ..++++.+|+.+.......++.+.. ...+.
T Consensus 4 ~k~vlItGas-ggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~-----~~~~~~~~Dl~d~~~~~~~~~~~~~-~~~g~ 76 (277)
T PRK05993 4 KRSILITGCS-SGIGAYCARALQSDGWRVFATCRKEEDVAALEA-----EGLEAFQLDYAEPESIAALVAQVLE-LSGGR 76 (277)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----CCceEEEccCCCHHHHHHHHHHHHH-HcCCC
Confidence 4678888864 4444444 4458899999999877665432 2577888888764322222222211 12356
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
.|++|.|.
T Consensus 77 id~li~~A 84 (277)
T PRK05993 77 LDALFNNG 84 (277)
T ss_pred ccEEEECC
Confidence 89999874
No 384
>PRK08251 short chain dehydrogenase; Provisional
Probab=87.29 E-value=4.4 Score=34.56 Aligned_cols=80 Identities=13% Similarity=0.184 Sum_probs=50.7
Q ss_pred CEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
+++|=.|+ +|.++..+++ .+.+|+.++.++..++.....+... .++.++.+|+.+..--...++.+. ...
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 79 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFR--DEL 79 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence 56887784 5566665554 4789999999988777665544321 278889999887532222222221 223
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 80 ~~id~vi~~a 89 (248)
T PRK08251 80 GGLDRVIVNA 89 (248)
T ss_pred CCCCEEEECC
Confidence 5689998874
No 385
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=87.24 E-value=4.6 Score=34.58 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=51.7
Q ss_pred CCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
+++||=.|. +|.++..+++ .|.+|++++.++...+......... .++.++.+|+.+..--...++.+. ...+
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~ 80 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAV--ETFG 80 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHcC
Confidence 457786664 5666666655 4789999999988776665555433 378899999876432222222221 1224
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|+||.+.
T Consensus 81 ~~d~vi~~a 89 (258)
T PRK12429 81 GVDILVNNA 89 (258)
T ss_pred CCCEEEECC
Confidence 679998764
No 386
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.04 E-value=2.1 Score=37.75 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=43.4
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHcC-------CEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccc
Q 023482 138 AVQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (281)
Q Consensus 138 ~~~~~~~VLDiGcG~G~~t~~la~~~-------~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~ 202 (281)
-+.+...++|+|||.|.++.+++..- ..++.||....-. .+-..+... ..++=+..|+.++.+.
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l~ 88 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDLS 88 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccchh
Confidence 34466789999999999999998752 4899999865333 222223222 2566677788777653
No 387
>PRK07825 short chain dehydrogenase; Provisional
Probab=86.98 E-value=4.3 Score=35.37 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=49.9
Q ss_pred CCEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 142 GDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
++++|=.|++.| ++.. +++.|.+|+.++.+++.++.+...+. ++.++.+|+.+..-....++.+. ...+.
T Consensus 5 ~~~ilVtGasgg-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 78 (273)
T PRK07825 5 GKVVAITGGARG-IGLATARALAALGARVAIGDLDEALAKETAAELG---LVVGGPLDVTDPASFAAFLDAVE--ADLGP 78 (273)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---cceEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence 568888887544 4444 44558899999999887766554443 57788999876442222233222 22256
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
.|++|.|.
T Consensus 79 id~li~~a 86 (273)
T PRK07825 79 IDVLVNNA 86 (273)
T ss_pred CCEEEECC
Confidence 78999874
No 388
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=86.94 E-value=1.9 Score=33.05 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=53.2
Q ss_pred CccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 151 GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 151 G~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
|.|..+..+++. |++|+++|.++.-++.+++.-.. .++..+-.+ + .+.+........+|+||-...-..
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~----~~~~~~~~~--~----~~~i~~~~~~~~~d~vid~~g~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD----HVIDYSDDD--F----VEQIRELTGGRGVDVVIDCVGSGD 70 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES----EEEETTTSS--H----HHHHHHHTTTSSEEEEEESSSSHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc----ccccccccc--c----ccccccccccccceEEEEecCcHH
Confidence 568889999887 88999999999999998864321 222222221 1 122222133357999998877444
Q ss_pred cHHHHHHhccCCCCc
Q 023482 230 STDVIKQLLPMGDIF 244 (281)
Q Consensus 230 ~~~~~~~ll~~~~~~ 244 (281)
.......++++++.+
T Consensus 71 ~~~~~~~~l~~~G~~ 85 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRI 85 (130)
T ss_dssp HHHHHHHHEEEEEEE
T ss_pred HHHHHHHHhccCCEE
Confidence 445555677766655
No 389
>PRK07074 short chain dehydrogenase; Provisional
Probab=86.67 E-value=5.4 Score=34.30 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=48.5
Q ss_pred CEEEEEcCCccHHHHH----HHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482 143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
+++|=.|++.| ++.. |++.|.+|++++.++.-.+....... ..++.++.+|+.+.......++.+. ...+.+
T Consensus 3 k~ilItGat~~-iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~~ 78 (257)
T PRK07074 3 RTALVTGAAGG-IGQALARRFLAAGDRVLALDIDAAALAAFADALG-DARFVPVACDLTDAASLAAALANAA--AERGPV 78 (257)
T ss_pred CEEEEECCcch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHH--HHcCCC
Confidence 46777776544 4444 44558899999999877665554442 2368888999877542222222221 122457
Q ss_pred cEEEEcC
Q 023482 219 AKVVANI 225 (281)
Q Consensus 219 d~Vi~n~ 225 (281)
|.||.+.
T Consensus 79 d~vi~~a 85 (257)
T PRK07074 79 DVLVANA 85 (257)
T ss_pred CEEEECC
Confidence 9998865
No 390
>PRK08628 short chain dehydrogenase; Provisional
Probab=86.66 E-value=4.6 Score=34.75 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.++++|=.|.+ |.++..+ +++|.+|+.++.++...+..+.......++.++.+|+.+..-....++-+. ...+
T Consensus 6 ~~~~ilItGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 82 (258)
T PRK08628 6 KDKVVIVTGGA-SGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTV--AKFG 82 (258)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HhcC
Confidence 45678888864 4444444 455889999998887663333322222478899999876432222222221 2235
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|.||.|..
T Consensus 83 ~id~vi~~ag 92 (258)
T PRK08628 83 RIDGLVNNAG 92 (258)
T ss_pred CCCEEEECCc
Confidence 6799998754
No 391
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=86.42 E-value=4.7 Score=34.43 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+++||=.|++.|. ++..+++.|.+|+.++.++. ..+.+..... +++.++.+|+.+..-....++.+. ...+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAV--EEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 46789988985442 33444445889999998752 2222222222 368899999887543222222221 2235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 80 ~~d~li~~a 88 (248)
T TIGR01832 80 HIDILVNNA 88 (248)
T ss_pred CCCEEEECC
Confidence 689999874
No 392
>PRK06180 short chain dehydrogenase; Provisional
Probab=86.39 E-value=4.5 Score=35.43 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=48.7
Q ss_pred CCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482 142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 142 ~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
+++||=.|++.|. ++..|++.|.+|++++.+++.++...... .+++.++.+|+.+..--...++.+. ...+.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~--~~~~~~ 79 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALH--PDRALARLLDVTDFDAIDAVVADAE--ATFGPI 79 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc--CCCeeEEEccCCCHHHHHHHHHHHH--HHhCCC
Confidence 4678888875443 33334445889999999987765544322 1368888899877542222222211 122467
Q ss_pred cEEEEcC
Q 023482 219 AKVVANI 225 (281)
Q Consensus 219 d~Vi~n~ 225 (281)
|+||.|.
T Consensus 80 d~vv~~a 86 (277)
T PRK06180 80 DVLVNNA 86 (277)
T ss_pred CEEEECC
Confidence 9999874
No 393
>PRK08324 short chain dehydrogenase; Validated
Probab=86.33 E-value=4.1 Score=41.05 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCcc--H-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G--~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.+++||=.|++.| . ++..+++.|.+|+.+|.++..++.+...+....++.++.+|+.+..-....++.+. ...+.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~--~~~g~ 498 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAA--LAFGG 498 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHH--HHcCC
Confidence 4578998886433 2 23333445889999999998877766655433578889999876432222222211 22356
Q ss_pred ccEEEEcCC
Q 023482 218 FAKVVANIP 226 (281)
Q Consensus 218 ~d~Vi~n~P 226 (281)
+|+||.|.-
T Consensus 499 iDvvI~~AG 507 (681)
T PRK08324 499 VDIVVSNAG 507 (681)
T ss_pred CCEEEECCC
Confidence 899998753
No 394
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.24 E-value=4.5 Score=35.18 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCc----cH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGT----GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~----G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++.+|=.|++. |. ++..+++.|++|+..+.++...+.+++.....+...++.+|+.+..--+..++.+. ...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~--~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIK--EKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHH--HHc
Confidence 467888888854 33 44556667899999888753323333222222333456788877543333333322 234
Q ss_pred CCccEEEEcCC
Q 023482 216 SGFAKVVANIP 226 (281)
Q Consensus 216 ~~~d~Vi~n~P 226 (281)
+..|++|.|.-
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 67899888753
No 395
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=86.18 E-value=4.9 Score=34.77 Aligned_cols=83 Identities=8% Similarity=0.119 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEe-CCHHHHHHHHHHhcC--CCCeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD-~s~~~l~~a~~~~~~--~~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.+++||=.|++.|. ++..+++.|++|+.+. .+++.++...+.+.. ..++.++.+|+.+..-....++.+. ..
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~ 84 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID--ED 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--Hh
Confidence 46788888876553 4445555688988875 455555544433332 1378899999887543333334332 23
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+..|++|.|.
T Consensus 85 ~g~id~lv~nA 95 (260)
T PRK08416 85 FDRVDFFISNA 95 (260)
T ss_pred cCCccEEEECc
Confidence 35789999875
No 396
>PRK09186 flagellin modification protein A; Provisional
Probab=86.08 E-value=5.3 Score=34.21 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHhhc
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
.+++||=.|++. .++..+ ++.|.+|++++.+++.++.+...+.. ...+.++.+|+.+..--...++.+. .
T Consensus 3 ~~k~vlItGas~-giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~--~ 79 (256)
T PRK09186 3 KGKTILITGAGG-LIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSA--E 79 (256)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHH--H
Confidence 456888888643 344444 44588999999998877766655532 1256778899887432222222221 2
Q ss_pred CCCCccEEEEcC
Q 023482 214 SSSGFAKVVANI 225 (281)
Q Consensus 214 ~~~~~d~Vi~n~ 225 (281)
..+..|+||.|.
T Consensus 80 ~~~~id~vi~~A 91 (256)
T PRK09186 80 KYGKIDGAVNCA 91 (256)
T ss_pred HcCCccEEEECC
Confidence 235579999874
No 397
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=86.08 E-value=6.4 Score=33.62 Aligned_cols=83 Identities=16% Similarity=0.234 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhh-c
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERR-K 213 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~-~ 213 (281)
++++||=.|+ +|.++..++ +.|.+|++++.+++.++.....+... .++.++.+|+......+ ..+.+..+ .
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~ 88 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQN-YQQLADTIEE 88 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHH-HHHHHHHHHH
Confidence 6778999985 555555554 44789999999987766655554433 26778888885432211 11111111 2
Q ss_pred CCCCccEEEEcC
Q 023482 214 SSSGFAKVVANI 225 (281)
Q Consensus 214 ~~~~~d~Vi~n~ 225 (281)
..+..|.||.|.
T Consensus 89 ~~~~id~vi~~A 100 (247)
T PRK08945 89 QFGRLDGVLHNA 100 (247)
T ss_pred HhCCCCEEEECC
Confidence 235689998864
No 398
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.00 E-value=4.5 Score=35.56 Aligned_cols=83 Identities=17% Similarity=0.100 Sum_probs=47.7
Q ss_pred CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++.+|=.|.+ .|. ++..+++.|++|+.+..++...+.+++.....+...++.+|+.+..--...++.+. ...
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~ 86 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLE--KKW 86 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHH--Hhc
Confidence 45788888974 444 34455556889988876643333333322222345567888876543333333332 234
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 87 g~iD~lv~nA 96 (272)
T PRK08159 87 GKLDFVVHAI 96 (272)
T ss_pred CCCcEEEECC
Confidence 6789999874
No 399
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=85.94 E-value=2.3 Score=33.87 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=51.2
Q ss_pred EEEEEcCCccH---HHHHHHHcCC-EEEEEeCC--HHHHHHHHHHhc-CCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 144 IVLEIGPGTGS---LTNVLLNAGA-TVLAIEKD--QHMVGLVRERFA-SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 144 ~VLDiGcG~G~---~t~~la~~~~-~v~gvD~s--~~~l~~a~~~~~-~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
++|=.|++.|. ++..+++.+. +|+.+..+ .+..+.....++ ...++.++.+|+.+..-....++.+. ...+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 79 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI--KRFG 79 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH--HHHS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence 56777776554 3444455544 88999998 566665554444 23589999999887543333334332 2446
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|++|.|..
T Consensus 80 ~ld~li~~ag 89 (167)
T PF00106_consen 80 PLDILINNAG 89 (167)
T ss_dssp SESEEEEECS
T ss_pred cccccccccc
Confidence 7999998743
No 400
>PRK06701 short chain dehydrogenase; Provisional
Probab=85.93 E-value=4.7 Score=35.81 Aligned_cols=83 Identities=13% Similarity=0.179 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCH-HHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ-HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~-~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.+++||=.|++.|. ++..+++.|.+|+.++.++ ...+.....+... .++.++.+|+.+....+..++.+. ...
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~--~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETV--REL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 46788988865443 3334445688999998874 2333333333332 368889999877543333333221 223
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|+||.|.
T Consensus 123 ~~iD~lI~~A 132 (290)
T PRK06701 123 GRLDILVNNA 132 (290)
T ss_pred CCCCEEEECC
Confidence 5679998764
No 401
>PRK06182 short chain dehydrogenase; Validated
Probab=85.90 E-value=4.9 Score=35.05 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=49.0
Q ss_pred CCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
+++||=.|++ |.++..++ +.|.+|++++.+++.++.... .+++++.+|+.+.......++.+. ...+.
T Consensus 3 ~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~--~~~~~ 74 (273)
T PRK06182 3 KKVALVTGAS-SGIGKATARRLAAQGYTVYGAARRVDKMEDLAS-----LGVHPLSLDVTDEASIKAAVDTII--AEEGR 74 (273)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----CCCeEEEeeCCCHHHHHHHHHHHH--HhcCC
Confidence 4678888854 44555554 448899999999876644322 257888999877543322233221 22357
Q ss_pred ccEEEEcCCC
Q 023482 218 FAKVVANIPF 227 (281)
Q Consensus 218 ~d~Vi~n~P~ 227 (281)
.|++|.|..+
T Consensus 75 id~li~~ag~ 84 (273)
T PRK06182 75 IDVLVNNAGY 84 (273)
T ss_pred CCEEEECCCc
Confidence 8999988643
No 402
>PRK07102 short chain dehydrogenase; Provisional
Probab=85.83 E-value=4.9 Score=34.29 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=46.6
Q ss_pred CEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcC--CCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~--~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
++|+=.|+ +|.++..++ +.|.+|++++.+++-.+...+.... .++++++.+|+.+..-- .+.+.. ...
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~~~~--~~~ 75 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASH---AAFLDS--LPA 75 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHH---HHHHHH--Hhh
Confidence 36777774 455555544 4588999999998766554444322 24889999998874321 112211 112
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
.+|.+|.|.
T Consensus 76 ~~d~vv~~a 84 (243)
T PRK07102 76 LPDIVLIAV 84 (243)
T ss_pred cCCEEEECC
Confidence 468888764
No 403
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=85.82 E-value=9 Score=34.15 Aligned_cols=44 Identities=34% Similarity=0.530 Sum_probs=35.5
Q ss_pred cCCCCCEEEEEcCC-ccHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Q 023482 138 AVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (281)
Q Consensus 138 ~~~~~~~VLDiGcG-~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~ 181 (281)
.+.++.+||..|+| .|..+..+++. |.+|++++.+++..+.+++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 45677889888876 47777778776 7899999999998888755
No 404
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=85.70 E-value=5.2 Score=34.42 Aligned_cols=81 Identities=14% Similarity=0.102 Sum_probs=48.7
Q ss_pred CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcC-C--CCeEEEEcCccccccccchhhHHHhhcC
Q 023482 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~-~--~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
+++||=.|.+ |.++..+ ++.|.+|+.++.++...+.....+.. . .++.++.+|+.+...-...++.+. ..
T Consensus 2 ~k~ilItG~~-~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~ 78 (259)
T PRK12384 2 NQVAVVIGGG-QTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVD--EI 78 (259)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHH--HH
Confidence 3568888854 5544444 45588999999998766555444322 1 368889999876432211222211 22
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+..|.||.|.
T Consensus 79 ~~~id~vv~~a 89 (259)
T PRK12384 79 FGRVDLLVYNA 89 (259)
T ss_pred cCCCCEEEECC
Confidence 35678888864
No 405
>PRK06940 short chain dehydrogenase; Provisional
Probab=85.64 E-value=5.3 Score=35.09 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=49.6
Q ss_pred CEEEEEcCCccHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHhcCCC-CeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482 143 DIVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~---~~~~v~gvD~s~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
+.+|=-|+ |.++..+++ .|.+|+.++.++.-++.+.+.+...+ ++.++.+|+.+..--...++.+ ...+..
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~---~~~g~i 77 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATA---QTLGPV 77 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH---HhcCCC
Confidence 34555564 356666655 37899999999877766555544333 6888899987754322223322 223578
Q ss_pred cEEEEcCC
Q 023482 219 AKVVANIP 226 (281)
Q Consensus 219 d~Vi~n~P 226 (281)
|++|.|.-
T Consensus 78 d~li~nAG 85 (275)
T PRK06940 78 TGLVHTAG 85 (275)
T ss_pred CEEEECCC
Confidence 99998753
No 406
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=85.59 E-value=1.9 Score=41.58 Aligned_cols=60 Identities=20% Similarity=0.433 Sum_probs=46.2
Q ss_pred CEEEEEcCCccHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHh-cCC-CCeEEEEcCccccccc
Q 023482 143 DIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERF-ASI-DQLKVLQEDFVKCHIR 202 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~~------~~~v~gvD~s~~~l~~a~~~~-~~~-~~v~~~~gD~~~~~~~ 202 (281)
..|+=+|.|-|-+.....+. ..++++||.+|.++-..+... ... ++|+++.+|+.+++.+
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap 436 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAP 436 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCc
Confidence 36889999999987666543 348999999999998776532 222 4899999999998743
No 407
>PRK05875 short chain dehydrogenase; Provisional
Probab=85.51 E-value=6.2 Score=34.35 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccccccccchhhHHHhhc
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
+++++|=.|++ |.++..++ +.|.+|++++.+++..+...+.+... .++.++.+|+.+.......++.+. .
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~ 82 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAAT--A 82 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHH--H
Confidence 35788988864 34444444 45889999999877665544443321 378888999876432111122111 2
Q ss_pred CCCCccEEEEcC
Q 023482 214 SSSGFAKVVANI 225 (281)
Q Consensus 214 ~~~~~d~Vi~n~ 225 (281)
..+..|++|.|.
T Consensus 83 ~~~~~d~li~~a 94 (276)
T PRK05875 83 WHGRLHGVVHCA 94 (276)
T ss_pred HcCCCCEEEECC
Confidence 234679998764
No 408
>PRK06914 short chain dehydrogenase; Provisional
Probab=85.50 E-value=6.3 Score=34.40 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=49.6
Q ss_pred CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHhhcC
Q 023482 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
++++|=.|++ |.++..+ +++|.+|++++.+++-.+........ ..++.++.+|+.+...... ++.+. ..
T Consensus 3 ~k~~lItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~--~~ 78 (280)
T PRK06914 3 KKIAIVTGAS-SGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVL--KE 78 (280)
T ss_pred CCEEEEECCC-chHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHH--Hh
Confidence 4578888854 3444444 44588999999988776655443332 1378899999987532222 22221 22
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+..|.||.+.
T Consensus 79 ~~~id~vv~~a 89 (280)
T PRK06914 79 IGRIDLLVNNA 89 (280)
T ss_pred cCCeeEEEECC
Confidence 35679888874
No 409
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.42 E-value=5.5 Score=34.44 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=49.3
Q ss_pred CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++++|=.|.+ .|. ++..+++.|.+|+.++.++...+.+++... .++.++.+|+.+..--+..++.+. ...
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~--~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVD--EEDLLVECDVASDESIERAFATIK--ERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhcc--CceeEEeCCCCCHHHHHHHHHHHH--HHh
Confidence 46788888875 333 444555568899999887554433333221 367888899876443333333332 223
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 82 g~iD~lv~nA 91 (252)
T PRK06079 82 GKIDGIVHAI 91 (252)
T ss_pred CCCCEEEEcc
Confidence 6789999874
No 410
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.37 E-value=4.9 Score=37.99 Aligned_cols=89 Identities=18% Similarity=0.149 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHhcCC--CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 023482 126 NSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (281)
Q Consensus 126 ~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~ 199 (281)
.++-...+...+... ...+|+=+|+ |.++..+++ .+.+|+.+|.+++.++.++.... ++.++.||+.+.
T Consensus 213 ~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~---~~~~i~gd~~~~ 287 (453)
T PRK09496 213 AREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP---NTLVLHGDGTDQ 287 (453)
T ss_pred CHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC---CCeEEECCCCCH
Confidence 344445555444322 2467887776 566655554 37799999999999888776542 577899998754
Q ss_pred ccccchhhHHHhhcCCCCccEEEEcCCC
Q 023482 200 HIRSHMLSLFERRKSSSGFAKVVANIPF 227 (281)
Q Consensus 200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~ 227 (281)
.. +.. .....+|.|+.-.+-
T Consensus 288 ~~-------L~~-~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 288 EL-------LEE-EGIDEADAFIALTND 307 (453)
T ss_pred HH-------HHh-cCCccCCEEEECCCC
Confidence 21 100 122456777765553
No 411
>PRK06057 short chain dehydrogenase; Provisional
Probab=85.36 E-value=5.2 Score=34.45 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+++||=.|++. .++..+ ++.|.+|+.++.++.-.+...+.+. ..++.+|..+....+..++.+. ...+
T Consensus 6 ~~~~vlItGasg-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~D~~~~~~~~~~~~~~~--~~~~ 78 (255)
T PRK06057 6 AGRVAVITGGGS-GIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG----GLFVPTDVTDEDAVNALFDTAA--ETYG 78 (255)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC----CcEEEeeCCCHHHHHHHHHHHH--HHcC
Confidence 467899999854 444444 4458899999999876655544432 2467778776432222222221 1225
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|.||.|.
T Consensus 79 ~id~vi~~a 87 (255)
T PRK06057 79 SVDIAFNNA 87 (255)
T ss_pred CCCEEEECC
Confidence 678888764
No 412
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=85.11 E-value=1.6 Score=37.90 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh
Q 023482 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF 183 (281)
Q Consensus 129 ~~~~l~~~l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~ 183 (281)
++..+.+.++.....+++|+-||+|..+..+...+..|+.-|+++..+...+..+
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHH
Confidence 4566666666435679999999999999888777889999999998887776333
No 413
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=85.05 E-value=7 Score=35.15 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=51.6
Q ss_pred CCEEEEEcCCccH---HHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 142 GDIVLEIGPGTGS---LTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 142 ~~~VLDiGcG~G~---~t~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
++++|=.|++.|. ++..+++.| .+|+.+..+++..+.+.+.+... .++.++.+|+.+..-....++.+. ...+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~ 80 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFR--ESGR 80 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHH--HhCC
Confidence 4577878866543 344455568 89999999887776665555422 367888889877543333333321 2235
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 81 ~iD~lI~nA 89 (314)
T TIGR01289 81 PLDALVCNA 89 (314)
T ss_pred CCCEEEECC
Confidence 689999874
No 414
>PTZ00357 methyltransferase; Provisional
Probab=85.03 E-value=2.9 Score=41.81 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=50.3
Q ss_pred EEEEEcCCccHHHHHHHHc----C--CEEEEEeCCHHHHHHHHHHh---cCCC--------CeEEEEcCccccccccc--
Q 023482 144 IVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERF---ASID--------QLKVLQEDFVKCHIRSH-- 204 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~la~~----~--~~v~gvD~s~~~l~~a~~~~---~~~~--------~v~~~~gD~~~~~~~d~-- 204 (281)
.|+=+|+|-|-+.....+. + .+|++||.|+..+.....+. .... .|+++..|+.++..+..
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999976555442 2 48999999977554444432 2222 48999999999854310
Q ss_pred hhhHHHhhcCCCCccEEEEcC
Q 023482 205 MLSLFERRKSSSGFAKVVANI 225 (281)
Q Consensus 205 ~~d~v~~~~~~~~~d~Vi~n~ 225 (281)
+... . ...+++|+||+-+
T Consensus 783 s~~~-P--~~~gKaDIVVSEL 800 (1072)
T PTZ00357 783 SLTL-P--ADFGLCDLIVSEL 800 (1072)
T ss_pred cccc-c--ccccccceehHhh
Confidence 0000 0 1124789999854
No 415
>PRK05855 short chain dehydrogenase; Validated
Probab=84.95 E-value=5.2 Score=38.76 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=52.2
Q ss_pred CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
+.++|=+|+ +|.++..+ ++.|.+|+.++.++..++.+.+.+... .++.++.+|+.+..-....++.+. ...+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g 391 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVR--AEHG 391 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HhcC
Confidence 457887776 44444444 445889999999988777665555433 378899999887543322333322 2335
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|.
T Consensus 392 ~id~lv~~A 400 (582)
T PRK05855 392 VPDIVVNNA 400 (582)
T ss_pred CCcEEEECC
Confidence 689999874
No 416
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=84.94 E-value=8.6 Score=36.06 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCccHHHH-----HHHHcCCEEEEEeCCHHHHH------------HHHHHhcCCC-CeEEEEcCccccccc
Q 023482 141 EGDIVLEIGPGTGSLTN-----VLLNAGATVLAIEKDQHMVG------------LVRERFASID-QLKVLQEDFVKCHIR 202 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~-----~la~~~~~v~gvD~s~~~l~------------~a~~~~~~~~-~v~~~~gD~~~~~~~ 202 (281)
.++++|=.|+.+|.-.. .+ ..|+++++++...+..+ ...+.....+ .+..+.+|+.+-.-.
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v 118 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIK 118 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 45799999998877333 44 56889999985432111 1222222223 567889999876544
Q ss_pred cchhhHHHhhcCCCCccEEEEcCCCc
Q 023482 203 SHMLSLFERRKSSSGFAKVVANIPFN 228 (281)
Q Consensus 203 d~~~d~v~~~~~~~~~d~Vi~n~P~~ 228 (281)
+..++.+. ...+..|++|.|.-+.
T Consensus 119 ~~lie~I~--e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 119 QKVIELIK--QDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHH--HhcCCCCEEEECCccC
Confidence 44555543 2347799999986554
No 417
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.76 E-value=7.1 Score=34.93 Aligned_cols=133 Identities=16% Similarity=0.196 Sum_probs=83.4
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC--C-CeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~-~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.++.|+==||-+|. ++..+++.|++++-+-...+-++...+.+.+. . ++.++.+|+.+...-...++++. ..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~--~~ 88 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAI--RH 88 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHH--Hh
Confidence 56788888887775 55666777888777777777776664443322 2 59999999999876665666654 45
Q ss_pred CCCccEEEEcCCCcc-------cHHHHH-------------------HhccCCCCcceEEEeehhhHHHHhcCCCCCCCc
Q 023482 215 SSGFAKVVANIPFNI-------STDVIK-------------------QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSE 268 (281)
Q Consensus 215 ~~~~d~Vi~n~P~~~-------~~~~~~-------------------~ll~~~~~~~~~~~~~~~~~a~rl~~~~pg~~~ 268 (281)
.+..|+.|.|-=+.. ....++ .+.+.+ ..........+.++ +.|...-
T Consensus 89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~----~GhIVvisSiaG~~--~~P~~~~ 162 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN----DGHIVVISSIAGKM--PLPFRSI 162 (282)
T ss_pred cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC----CCeEEEEecccccc--CCCcccc
Confidence 678899998843221 111111 333332 12222334444454 3666678
Q ss_pred cchhhhhhhhccC
Q 023482 269 YRPINIFVNFYSG 281 (281)
Q Consensus 269 y~~~s~l~~~~~~ 281 (281)
|.+-...++.||+
T Consensus 163 Y~ASK~Al~~f~e 175 (282)
T KOG1205|consen 163 YSASKHALEGFFE 175 (282)
T ss_pred cchHHHHHHHHHH
Confidence 9888888887764
No 418
>PLN02780 ketoreductase/ oxidoreductase
Probab=84.76 E-value=6.6 Score=35.54 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEcCccc
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK 198 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~v~~~~gD~~~ 198 (281)
.++.+|=.|++.|. ++..+++.|.+|+.++.+++.++...+.+... .++..+..|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 36789999976653 55555666889999999999887776655432 256777778763
No 419
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=84.76 E-value=7.3 Score=33.99 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh-cCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR-KSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~-~~~~ 216 (281)
.++.+|==|..+|. .+..|++.|.+|+.+....+.++.....+.. +.+..+..|+.+..--+ ..+..+ ...+
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-~~~~~~~~DVtD~~~~~---~~i~~~~~~~g 80 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-GAALALALDVTDRAAVE---AAIEALPEEFG 80 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-CceEEEeeccCCHHHHH---HHHHHHHHhhC
Confidence 34567777776665 5566677799999999999999998888875 57888888888753211 112111 3457
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|++|.|-
T Consensus 81 ~iDiLvNNA 89 (246)
T COG4221 81 RIDILVNNA 89 (246)
T ss_pred cccEEEecC
Confidence 799999883
No 420
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=84.74 E-value=5.1 Score=34.54 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++.+|=.|+.. .++..+ ++.|++|++++.++. +...+.+... .++.++.+|+.+..-.+..++-+. ...
T Consensus 9 ~~k~~lItG~~~-gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 83 (253)
T PRK08993 9 EGKVAVVTGCDT-GLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAV--AEF 83 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHh
Confidence 467888888754 444444 445889999987642 1222222222 367888888876432222233221 223
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 84 ~~~D~li~~A 93 (253)
T PRK08993 84 GHIDILVNNA 93 (253)
T ss_pred CCCCEEEECC
Confidence 5689999875
No 421
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=84.72 E-value=2.3 Score=36.37 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=43.3
Q ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC-CCccEEEEcC
Q 023482 155 LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS-SGFAKVVANI 225 (281)
Q Consensus 155 ~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~-~~~d~Vi~n~ 225 (281)
++..+++.|++|+.++.+++.++.+.+.+......+++.+|+.+-.--+..++.+. ... +..|++|.|.
T Consensus 12 ia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~~g~iD~lV~~a 81 (241)
T PF13561_consen 12 IARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAV--ERFGGRIDILVNNA 81 (241)
T ss_dssp HHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHH--HHHCSSESEEEEEE
T ss_pred HHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHH--hhcCCCeEEEEecc
Confidence 44555666999999999999864444333322234579999876544333444432 233 7889988763
No 422
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=84.46 E-value=10 Score=33.56 Aligned_cols=85 Identities=14% Similarity=0.282 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC-C-CeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~-~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.+.++|=-|.-.|. ++..+|++|.+++.|-.+++-++...+.+... + .+.++..|..+..-....++.+. ...
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~--~~~ 82 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELK--ERG 82 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHH--hcC
Confidence 45678877776554 56666777999999999999998888877643 2 78899999888654333343332 223
Q ss_pred CCccEEEEcCCC
Q 023482 216 SGFAKVVANIPF 227 (281)
Q Consensus 216 ~~~d~Vi~n~P~ 227 (281)
...|++|-|-=|
T Consensus 83 ~~IdvLVNNAG~ 94 (265)
T COG0300 83 GPIDVLVNNAGF 94 (265)
T ss_pred CcccEEEECCCc
Confidence 578988887544
No 423
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.45 E-value=4.7 Score=34.96 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=49.0
Q ss_pred CCCEEEEEcCC-ccHHHHH----HHHcCCEEEEEeCCH--HHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482 141 EGDIVLEIGPG-TGSLTNV----LLNAGATVLAIEKDQ--HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 141 ~~~~VLDiGcG-~G~~t~~----la~~~~~v~gvD~s~--~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
.++++|=.|.| ++.++.. +++.|++|+.++.++ +.++.....+. .++.++.+|+.+..--+..++.+. .
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~--~ 81 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP--EPAPVLELDVTNEEHLASLADRVR--E 81 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC--CCCcEEeCCCCCHHHHHHHHHHHH--H
Confidence 46789999983 3444444 444588999998763 44444444332 256788888877543333333332 2
Q ss_pred CCCCccEEEEcC
Q 023482 214 SSSGFAKVVANI 225 (281)
Q Consensus 214 ~~~~~d~Vi~n~ 225 (281)
..+..|++|.|.
T Consensus 82 ~~g~iD~li~nA 93 (256)
T PRK07889 82 HVDGLDGVVHSI 93 (256)
T ss_pred HcCCCcEEEEcc
Confidence 336789999874
No 424
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=84.43 E-value=7.8 Score=33.12 Aligned_cols=80 Identities=11% Similarity=0.114 Sum_probs=48.1
Q ss_pred EEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482 144 IVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
++|=.|+ +|.++..+ ++.|.+|+.++.++..++...+.+... .++.++.+|+.+.......++.+. ...+..
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~--~~~~~i 78 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAA--EKFGGF 78 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HHcCCC
Confidence 4666774 45555554 445889999999877666555444433 378899999876432111122211 223467
Q ss_pred cEEEEcCC
Q 023482 219 AKVVANIP 226 (281)
Q Consensus 219 d~Vi~n~P 226 (281)
|++|.|..
T Consensus 79 d~vi~~ag 86 (254)
T TIGR02415 79 DVMVNNAG 86 (254)
T ss_pred CEEEECCC
Confidence 88988754
No 425
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=84.42 E-value=4 Score=35.74 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=62.0
Q ss_pred EEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC
Q 023482 146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (281)
Q Consensus 146 LDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~ 225 (281)
|..-||+-.++..+....-++.+.|+.+.=....++++....++++.++|.....-. .+.++..--.|+.+|
T Consensus 93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a--------~LPP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKA--------HLPPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhh--------hCCCCCcceEEEeCC
Confidence 889999999999988877799999999999999999998767999999997653211 112334456788899
Q ss_pred CCcccH
Q 023482 226 PFNIST 231 (281)
Q Consensus 226 P~~~~~ 231 (281)
||....
T Consensus 165 PfE~~~ 170 (279)
T COG2961 165 PFELKD 170 (279)
T ss_pred Cccccc
Confidence 997655
No 426
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.39 E-value=19 Score=29.94 Aligned_cols=106 Identities=20% Similarity=0.177 Sum_probs=61.8
Q ss_pred cCccccCCHHHHHHHHHHh--cCCCCCEEEEEcCCccHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCCeEEEE
Q 023482 119 LGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (281)
Q Consensus 119 ~g~~~~~~~~~~~~l~~~l--~~~~~~~VLDiGcG~G~~t~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~ 193 (281)
+.| |.-.++.+..++... ....+.+|-=|.|-+=+.-...... ..+|+-+|.+...-... -+|+.
T Consensus 50 lsq-fwy~~eta~~La~e~v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg---------~eFvf 119 (217)
T KOG3350|consen 50 LSQ-FWYSDETARKLAAERVEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYG---------TEFVF 119 (217)
T ss_pred hhh-hhcCHHHHHHHHHHHHhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHHhcc---------ceeEE
Confidence 344 555666666665543 2234556777766664422222222 34899999997654433 35777
Q ss_pred cCcccc-ccccchhhHHHhhcCCCCccEEEEcCCCcc------cHHHHHHhccCCCC
Q 023482 194 EDFVKC-HIRSHMLSLFERRKSSSGFAKVVANIPFNI------STDVIKQLLPMGDI 243 (281)
Q Consensus 194 gD~~~~-~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~------~~~~~~~ll~~~~~ 243 (281)
-|...- ++++ .+ ...||+||++|||-. ....++.|.++...
T Consensus 120 YDyN~p~dlp~----~l-----k~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~k 167 (217)
T KOG3350|consen 120 YDYNCPLDLPD----EL-----KAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKK 167 (217)
T ss_pred eccCCCCCCHH----HH-----HhcccEEEeCCccccchhhhhhHHHHHHHhcCCce
Confidence 776542 2222 11 256999999999933 34566777766543
No 427
>PRK07806 short chain dehydrogenase; Provisional
Probab=84.30 E-value=7.5 Score=33.13 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCH-HHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQ-HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~-~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.++++|-.|+. |.++..++ +.|.+|+++..+. ...+.....+... .++.++.+|+.+..-....++.+. ..
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~ 81 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAR--EE 81 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--Hh
Confidence 45688988863 33444443 4588999988764 3333333333322 368889999877432222222211 12
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+..|++|.|.
T Consensus 82 ~~~~d~vi~~a 92 (248)
T PRK07806 82 FGGLDALVLNA 92 (248)
T ss_pred CCCCcEEEECC
Confidence 24678888775
No 428
>PRK05599 hypothetical protein; Provisional
Probab=84.27 E-value=6.5 Score=33.82 Aligned_cols=79 Identities=10% Similarity=0.128 Sum_probs=50.4
Q ss_pred EEEEEcCCccHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482 144 IVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~la~---~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
.+|=.|++.|. +..++. .+.+|+.++.+++-++.+.+.+...+ .+.++.+|+.+..--...++.+. ...+..
T Consensus 2 ~vlItGas~GI-G~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~i 78 (246)
T PRK05599 2 SILILGGTSDI-AGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQ--ELAGEI 78 (246)
T ss_pred eEEEEeCccHH-HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHH--HhcCCC
Confidence 46667776554 444433 37899999999888877766665433 47888999887543333333332 223678
Q ss_pred cEEEEcC
Q 023482 219 AKVVANI 225 (281)
Q Consensus 219 d~Vi~n~ 225 (281)
|++|.|.
T Consensus 79 d~lv~na 85 (246)
T PRK05599 79 SLAVVAF 85 (246)
T ss_pred CEEEEec
Confidence 9888764
No 429
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=84.23 E-value=4.6 Score=39.78 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=50.7
Q ss_pred HhcCCCCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcC----------CCCeEEEEcCcccccc
Q 023482 136 AAAVQEGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFAS----------IDQLKVLQEDFVKCHI 201 (281)
Q Consensus 136 ~l~~~~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~----------~~~v~~~~gD~~~~~~ 201 (281)
.++.+.+++||=.|+ +|.++..++ +.|.+|++++.+.+-++.....+.. ..++.++.+|+.+...
T Consensus 74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 334457778888876 455565554 3488999999998776654433211 1268899999986431
Q ss_pred ccchhhHHHhhcCCCCccEEEEcC
Q 023482 202 RSHMLSLFERRKSSSGFAKVVANI 225 (281)
Q Consensus 202 ~d~~~d~v~~~~~~~~~d~Vi~n~ 225 (281)
+. ...+..|+||.+.
T Consensus 153 ------I~---~aLggiDiVVn~A 167 (576)
T PLN03209 153 ------IG---PALGNASVVICCI 167 (576)
T ss_pred ------HH---HHhcCCCEEEEcc
Confidence 11 1124578888874
No 430
>PRK06841 short chain dehydrogenase; Provisional
Probab=84.11 E-value=7.8 Score=33.19 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.+++||=.|++.|. ++..+++.|.+|+.++.++...+.+.... ..++.++.+|+.+..-....++.+. ...+.
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~ 89 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLL--GGNAKGLVCDVSDSQSVEAAVAAVI--SAFGR 89 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhh--CCceEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence 46788988865443 33444556889999999987544443321 1367788888876532222233221 12356
Q ss_pred ccEEEEcCC
Q 023482 218 FAKVVANIP 226 (281)
Q Consensus 218 ~d~Vi~n~P 226 (281)
.|.+|.|.-
T Consensus 90 ~d~vi~~ag 98 (255)
T PRK06841 90 IDILVNSAG 98 (255)
T ss_pred CCEEEECCC
Confidence 899998753
No 431
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.96 E-value=6.6 Score=34.09 Aligned_cols=82 Identities=16% Similarity=0.143 Sum_probs=48.8
Q ss_pred CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCC---HHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhh
Q 023482 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKD---QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (281)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s---~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~ 212 (281)
.++++|=.|.+ .|. ++..+++.|++|+.++.+ ++.++...+... .+++.++.+|+.+..-.+..++.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~-- 82 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIK-- 82 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHH--
Confidence 46789999975 333 334445568899988654 334444443332 2467888899877543333333332
Q ss_pred cCCCCccEEEEcC
Q 023482 213 KSSSGFAKVVANI 225 (281)
Q Consensus 213 ~~~~~~d~Vi~n~ 225 (281)
...+..|++|.|.
T Consensus 83 ~~~g~ld~lv~na 95 (257)
T PRK08594 83 EEVGVIHGVAHCI 95 (257)
T ss_pred HhCCCccEEEECc
Confidence 2336789988764
No 432
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=83.88 E-value=2.2 Score=33.87 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=30.6
Q ss_pred EEcCCcc--HHHHHHH--Hc--CCEEEEEeCCHHHHHHHHHH--hcCC---CCeEEEEcCc
Q 023482 147 EIGPGTG--SLTNVLL--NA--GATVLAIEKDQHMVGLVRER--FASI---DQLKVLQEDF 196 (281)
Q Consensus 147 DiGcG~G--~~t~~la--~~--~~~v~gvD~s~~~l~~a~~~--~~~~---~~v~~~~gD~ 196 (281)
|||+..| ..+..+. .. +.+|+++|.++..++..+.+ +.-+ +.+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6666554 22 56999999999999999888 3322 2455555443
No 433
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=83.87 E-value=3.3 Score=38.41 Aligned_cols=48 Identities=29% Similarity=0.403 Sum_probs=39.7
Q ss_pred HHhcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHH
Q 023482 135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER 182 (281)
Q Consensus 135 ~~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~ 182 (281)
....+.++.+||.+|||. |..+..+++. +. +++++|.+++..+.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 344566788999999988 8888888887 65 699999999999988875
No 434
>PRK06198 short chain dehydrogenase; Provisional
Probab=83.80 E-value=6.5 Score=33.77 Aligned_cols=82 Identities=11% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCE-EEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGAT-VLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~-v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.+++||=.|++ |.++..++ +.|.+ |+.++.+++-.......+... .++.++.+|+.+.......++.+. ..
T Consensus 5 ~~k~vlItGa~-g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~ 81 (260)
T PRK06198 5 DGKVALVTGGT-QGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAAD--EA 81 (260)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HH
Confidence 45788888864 44555444 44777 999999876665444444322 367888899876443222333221 12
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+..|.+|.+.
T Consensus 82 ~g~id~li~~a 92 (260)
T PRK06198 82 FGRLDALVNAA 92 (260)
T ss_pred hCCCCEEEECC
Confidence 24678888864
No 435
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=83.73 E-value=4.7 Score=40.03 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=46.2
Q ss_pred EEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482 144 IVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d 219 (281)
+|+= ||.|..+..+++ .+.+++.+|.|++.++.+++. ...++.||+.+...- .. ..-+..+
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L-------~~-agi~~A~ 466 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQLELL-------RA-AGAEKAE 466 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHH-------Hh-cCCccCC
Confidence 4554 556666666654 377999999999999988752 467999999875421 11 2234567
Q ss_pred EEEEcCCC
Q 023482 220 KVVANIPF 227 (281)
Q Consensus 220 ~Vi~n~P~ 227 (281)
.++...+-
T Consensus 467 ~vv~~~~d 474 (601)
T PRK03659 467 AIVITCNE 474 (601)
T ss_pred EEEEEeCC
Confidence 77775554
No 436
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=83.57 E-value=3.3 Score=37.18 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=40.6
Q ss_pred hcCCCCCEEEEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Q 023482 137 AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (281)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~ 184 (281)
+....+.+|.-||+|-......++..-++|.+||+++.-++..+.++.
T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred HhcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence 344578899999999988888888888899999999999987776654
No 437
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=83.52 E-value=1.1 Score=42.61 Aligned_cols=75 Identities=23% Similarity=0.248 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhc---
Q 023482 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRK--- 213 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~--- 213 (281)
.+..+|=+|-|.|.+...+-.. ..++++||++|.+++.|.+++.-.. +.+++-.|..+ ++-....
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~--------~~~~~~k~~~ 366 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLD--------FLQRTAKSQQ 366 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchH--------HHHHHhhccc
Confidence 3456888888889988877655 4699999999999999999876321 33444444433 2222211
Q ss_pred CCCCccEEEE
Q 023482 214 SSSGFAKVVA 223 (281)
Q Consensus 214 ~~~~~d~Vi~ 223 (281)
....||+++.
T Consensus 367 ~~~~~dvl~~ 376 (482)
T KOG2352|consen 367 EDICPDVLMV 376 (482)
T ss_pred cccCCcEEEE
Confidence 3456888876
No 438
>PRK08278 short chain dehydrogenase; Provisional
Probab=83.48 E-value=5.9 Score=34.66 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHH-------HHHHHHHhcCC-CCeEEEEcCccccccccchhhHH
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHM-------VGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLF 209 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~-------l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v 209 (281)
.++++|=.|++.|. ++..+++.|.+|+.++.+... ++.+.+.+... .++.++.+|+.+..--...++.+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~ 84 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA 84 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 45688888876543 334445568899999986531 22233333322 37888999987754322222222
Q ss_pred HhhcCCCCccEEEEcCC
Q 023482 210 ERRKSSSGFAKVVANIP 226 (281)
Q Consensus 210 ~~~~~~~~~d~Vi~n~P 226 (281)
. ...+..|++|.|..
T Consensus 85 ~--~~~g~id~li~~ag 99 (273)
T PRK08278 85 V--ERFGGIDICVNNAS 99 (273)
T ss_pred H--HHhCCCCEEEECCC
Confidence 1 22256899988743
No 439
>PRK06114 short chain dehydrogenase; Provisional
Probab=83.13 E-value=8.2 Score=33.19 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCH-HHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQ-HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~-~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.++++|=.|.+ |.++..+++ .|++|+.++.+. ..++.+.+.+... .++.++.+|+.+..-....++.+. ..
T Consensus 7 ~~k~~lVtG~s-~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~--~~ 83 (254)
T PRK06114 7 DGQVAFVTGAG-SGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTE--AE 83 (254)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HH
Confidence 46688888854 445555544 488999999864 3334443334332 378888899876432222222221 23
Q ss_pred CCCccEEEEcCC
Q 023482 215 SSGFAKVVANIP 226 (281)
Q Consensus 215 ~~~~d~Vi~n~P 226 (281)
.+..|.+|.|.-
T Consensus 84 ~g~id~li~~ag 95 (254)
T PRK06114 84 LGALTLAVNAAG 95 (254)
T ss_pred cCCCCEEEECCC
Confidence 366899998753
No 440
>PRK12743 oxidoreductase; Provisional
Probab=83.07 E-value=8.4 Score=33.19 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=48.2
Q ss_pred CCEEEEEcCCccHHHHHHHH----cCCEEEEEe-CCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIE-KDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~----~~~~v~gvD-~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
+++||=.|++ |.++..+++ .|.+|+.+. .+++..+.+....... .++.++.+|+.+..-....++.+. ...
T Consensus 2 ~k~vlItGas-~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 78 (256)
T PRK12743 2 AQVAIVTASD-SGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLI--QRL 78 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 3578888865 445555554 488988875 4555555554444433 378899999877542222222221 223
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|.+|.|.
T Consensus 79 ~~id~li~~a 88 (256)
T PRK12743 79 GRIDVLVNNA 88 (256)
T ss_pred CCCCEEEECC
Confidence 5679999875
No 441
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=82.96 E-value=5.8 Score=41.85 Aligned_cols=92 Identities=16% Similarity=0.158 Sum_probs=60.2
Q ss_pred CCEEEEEcCC-ccHHHH-HHHHc-CCE-------------EEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccch
Q 023482 142 GDIVLEIGPG-TGSLTN-VLLNA-GAT-------------VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM 205 (281)
Q Consensus 142 ~~~VLDiGcG-~G~~t~-~la~~-~~~-------------v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~ 205 (281)
.++|+=|||| .|.... .+++. +.+ |+..|.+++..+.+.+... +++.+..|+.+.. ..
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~---~~~~v~lDv~D~e---~L 642 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE---NAEAVQLDVSDSE---SL 642 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC---CCceEEeecCCHH---HH
Confidence 4589999997 354333 33332 223 8889999877665555432 5566677665432 11
Q ss_pred hhHHHhhcCCCCccEEEEcCCCcccHHHHHHhccCCCCcc
Q 023482 206 LSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFS 245 (281)
Q Consensus 206 ~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~~~ll~~~~~~~ 245 (281)
..++ ...|+|++-.|+....++.+..++.+..+-
T Consensus 643 ~~~v------~~~DaVIsalP~~~H~~VAkaAieaGkHvv 676 (1042)
T PLN02819 643 LKYV------SQVDVVISLLPASCHAVVAKACIELKKHLV 676 (1042)
T ss_pred HHhh------cCCCEEEECCCchhhHHHHHHHHHcCCCEE
Confidence 1111 348999999999999999998888877653
No 442
>PRK06484 short chain dehydrogenase; Validated
Probab=82.91 E-value=7.6 Score=37.41 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.++.+|=.|.+.|. ++..+++.|.+|+.++.+++.++.+.+... .++..+.+|+.+..-....++.+. ...+.
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~ 343 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG--DEHLSVQADITDEAAVESAFAQIQ--ARWGR 343 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence 45678888876653 344455568899999999887776665442 356678888876543222333321 23367
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
.|++|.|.
T Consensus 344 id~li~nA 351 (520)
T PRK06484 344 LDVLVNNA 351 (520)
T ss_pred CCEEEECC
Confidence 89999874
No 443
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=82.86 E-value=6 Score=36.03 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=50.9
Q ss_pred CCEEEEEcCCccHHH----HHHHHcCCEEEEEeC----CHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482 142 GDIVLEIGPGTGSLT----NVLLNAGATVLAIEK----DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t----~~la~~~~~v~gvD~----s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
+.+||-.| |.|+++ +.|.+.|..|+++|- ..+.+..+++...+...|.|+++|..+.+.-...|+.
T Consensus 2 ~~~VLVtG-gaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~----- 75 (343)
T KOG1371|consen 2 GKHVLVTG-GAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSE----- 75 (343)
T ss_pred CcEEEEec-CCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhh-----
Confidence 34677766 556543 455566889999994 3555556666555556999999999998766655554
Q ss_pred CCCCccEEEE
Q 023482 214 SSSGFAKVVA 223 (281)
Q Consensus 214 ~~~~~d~Vi~ 223 (281)
..||.|+.
T Consensus 76 --~~fd~V~H 83 (343)
T KOG1371|consen 76 --VKFDAVMH 83 (343)
T ss_pred --cCCceEEe
Confidence 35888875
No 444
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=82.71 E-value=0.72 Score=34.78 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.4
Q ss_pred CccEEEEcCCCcccH
Q 023482 217 GFAKVVANIPFNIST 231 (281)
Q Consensus 217 ~~d~Vi~n~P~~~~~ 231 (281)
.||+||+||||....
T Consensus 2 kFD~VIGNPPY~~~~ 16 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIK 16 (106)
T ss_pred CcCEEEECCCChhhc
Confidence 489999999996544
No 445
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=82.67 E-value=8.9 Score=32.31 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=50.6
Q ss_pred CCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
+++||=.|+ +|.++..+++ +|.+|++++.++...+.....+... .++.++.+|+.+..-.+..++.+. ...+
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 81 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAV--EAFG 81 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHhC
Confidence 467887775 6666666654 4789999999987766555544432 378888899876432221222111 1124
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|.||.+.
T Consensus 82 ~id~vi~~a 90 (246)
T PRK05653 82 ALDILVNNA 90 (246)
T ss_pred CCCEEEECC
Confidence 578888865
No 446
>PRK07201 short chain dehydrogenase; Provisional
Probab=82.55 E-value=7 Score=38.86 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=52.4
Q ss_pred CCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
++++|=.|.+. .++..+ ++.|.+|+.++.+++.++...+..... .++.++.+|+.+..-....++.+. ...+
T Consensus 371 ~k~vlItGas~-giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g 447 (657)
T PRK07201 371 GKVVLITGASS-GIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDIL--AEHG 447 (657)
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH--HhcC
Confidence 56788777644 444444 445889999999988877666555432 378899999877543222222221 2235
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|++|.|.-
T Consensus 448 ~id~li~~Ag 457 (657)
T PRK07201 448 HVDYLVNNAG 457 (657)
T ss_pred CCCEEEECCC
Confidence 6899998753
No 447
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.52 E-value=8.8 Score=33.00 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=47.2
Q ss_pred CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCC------------HHHHHHHHHHhcCC-CCeEEEEcCccccccc
Q 023482 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIR 202 (281)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s------------~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~ 202 (281)
.+++||=.|++ .|. ++..+++.|.+|+.++.+ +.... ........ .++.++.+|+.+..-.
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCCeEEEEECCCCCHHHH
Confidence 35678999975 332 344455568899999876 22222 22222222 3788999998774422
Q ss_pred cchhhHHHhhcCCCCccEEEEcC
Q 023482 203 SHMLSLFERRKSSSGFAKVVANI 225 (281)
Q Consensus 203 d~~~d~v~~~~~~~~~d~Vi~n~ 225 (281)
...++.+. ...+..|+||.+.
T Consensus 83 ~~~~~~~~--~~~g~id~vi~~a 103 (256)
T PRK12748 83 NRVFYAVS--ERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHH--HhCCCCCEEEECC
Confidence 22233222 2235689888864
No 448
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=82.49 E-value=3.2 Score=40.28 Aligned_cols=44 Identities=25% Similarity=0.225 Sum_probs=36.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH
Q 023482 139 VQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER 182 (281)
Q Consensus 139 ~~~~~~VLDiGcG~-G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~ 182 (281)
..++++|+=+|+|. |..++..++. |++|+++|.+++.++.+++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 34688999999994 6666666765 88999999999999998873
No 449
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=82.34 E-value=8.3 Score=38.87 Aligned_cols=83 Identities=13% Similarity=0.116 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcC---CCCeEEEEcCccccccccchhhHHHhhc
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~---~~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
.+++||=.|++. .++..+ ++.|++|++++.+.+.++.....+.. .+++.++.+|+.+..--...++.+. .
T Consensus 413 ~gkvvLVTGasg-gIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~--~ 489 (676)
T TIGR02632 413 ARRVAFVTGGAG-GIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVA--L 489 (676)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHH--H
Confidence 356888888654 444444 44588999999998877666554431 1367788899877432222222221 2
Q ss_pred CCCCccEEEEcCC
Q 023482 214 SSSGFAKVVANIP 226 (281)
Q Consensus 214 ~~~~~d~Vi~n~P 226 (281)
..+..|++|.|.-
T Consensus 490 ~~g~iDilV~nAG 502 (676)
T TIGR02632 490 AYGGVDIVVNNAG 502 (676)
T ss_pred hcCCCcEEEECCC
Confidence 3357899998753
No 450
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=82.14 E-value=10 Score=30.98 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=57.0
Q ss_pred ccCCHHHHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 023482 123 YMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (281)
Q Consensus 123 ~~~~~~~~~~l~~~l~~--~~~~~VLDiGcG~G~~t~~la~-~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~ 199 (281)
|.-+.+.++.+++.+.- ..+.+|+=|||=+-+..+.-.. .+.+++.+|+|...-... ++ .|+.-|..+-
T Consensus 5 fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~-------~~-~F~fyD~~~p 76 (162)
T PF10237_consen 5 FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG-------GD-EFVFYDYNEP 76 (162)
T ss_pred cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC-------Cc-ceEECCCCCh
Confidence 55555666666666543 3456899998877655544411 256999999998664321 13 4666665541
Q ss_pred ccccchhhHHHhhcCCCCccEEEEcCCCcccHHHH
Q 023482 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234 (281)
Q Consensus 200 ~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~~~~~~ 234 (281)
. ++-. .-.+.+|+||.+||| ...+..
T Consensus 77 ~------~~~~--~l~~~~d~vv~DPPF-l~~ec~ 102 (162)
T PF10237_consen 77 E------ELPE--ELKGKFDVVVIDPPF-LSEECL 102 (162)
T ss_pred h------hhhh--hcCCCceEEEECCCC-CCHHHH
Confidence 1 0000 113689999999999 444443
No 451
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=82.12 E-value=17 Score=32.08 Aligned_cols=43 Identities=26% Similarity=0.399 Sum_probs=28.6
Q ss_pred CCCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhc
Q 023482 140 QEGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFA 184 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~ 184 (281)
..+++++=+|+| | .+..++ ..+.+|+.++.+++-.+...+.+.
T Consensus 115 ~~~k~vliiGaG-g-~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~ 161 (270)
T TIGR00507 115 RPNQRVLIIGAG-G-AARAVALPLLKADCNVIIANRTVSKAEELAERFQ 161 (270)
T ss_pred ccCCEEEEEcCc-H-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence 346789999987 3 343333 347799999999776655554443
No 452
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=82.09 E-value=2.3 Score=37.17 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=45.9
Q ss_pred EEEcCCccHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcC
Q 023482 146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (281)
Q Consensus 146 LDiGcG~G~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~ 225 (281)
|..=+|+-.++..+.+..-+.+.+|+.+.-.+..++++....++++++.|..+.-. ..+.+...-=+|+.+|
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~--------allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLK--------ALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHH--------HH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhh--------hhCCCCCCCeEEEECC
Confidence 77889999999999888779999999999999999988876799999999876311 1112334456788899
Q ss_pred CCcccH
Q 023482 226 PFNIST 231 (281)
Q Consensus 226 P~~~~~ 231 (281)
||....
T Consensus 134 pYE~~~ 139 (245)
T PF04378_consen 134 PYEQKD 139 (245)
T ss_dssp ---STT
T ss_pred CCCCch
Confidence 997655
No 453
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.08 E-value=9.4 Score=32.29 Aligned_cols=82 Identities=12% Similarity=0.199 Sum_probs=50.7
Q ss_pred CCEEEEEcCCccHHHHHHH----HcCCEEEEE-eCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la----~~~~~v~gv-D~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
+++||=.|+ +|.++..++ +.|.+|+.+ +.+++..+.....+... .++.++.+|+.+..-....++.+. ...
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 81 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIV--EKF 81 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHh
Confidence 457887874 555555554 447899998 99887766555544432 378899999987542222222221 122
Q ss_pred CCccEEEEcCC
Q 023482 216 SGFAKVVANIP 226 (281)
Q Consensus 216 ~~~d~Vi~n~P 226 (281)
+.+|+||.+..
T Consensus 82 ~~id~vi~~ag 92 (247)
T PRK05565 82 GKIDILVNNAG 92 (247)
T ss_pred CCCCEEEECCC
Confidence 46899998753
No 454
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=81.90 E-value=15 Score=33.74 Aligned_cols=47 Identities=32% Similarity=0.440 Sum_probs=34.7
Q ss_pred HHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHH
Q 023482 135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE 181 (281)
Q Consensus 135 ~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~ 181 (281)
....+.++++||=.|+| .|.++..+++. |+ +|+++|.+++-++.+++
T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 34556788888888875 34455556665 77 79999999999888865
No 455
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.84 E-value=11 Score=32.05 Aligned_cols=83 Identities=14% Similarity=0.230 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEcCccccccc--cchhhHHHhh
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIR--SHMLSLFERR 212 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~--d~~~d~v~~~ 212 (281)
++++||=.|++ |.++..+ +++|.+|+.++.++...+.....+... ..+.++..|+.+.... +..++.+..
T Consensus 5 ~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~- 82 (239)
T PRK08703 5 SDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE- 82 (239)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH-
Confidence 45789999964 4444444 445889999999988776665554322 2566777777542210 111122211
Q ss_pred cCCCCccEEEEcC
Q 023482 213 KSSSGFAKVVANI 225 (281)
Q Consensus 213 ~~~~~~d~Vi~n~ 225 (281)
...+..|.||.|.
T Consensus 83 ~~~~~id~vi~~a 95 (239)
T PRK08703 83 ATQGKLDGIVHCA 95 (239)
T ss_pred HhCCCCCEEEEec
Confidence 1114678888764
No 456
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=81.83 E-value=11 Score=32.36 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=45.3
Q ss_pred EEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482 144 IVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d 219 (281)
+||=.|+ +|.++..++ +.|.+|++++.+++-++....... .++.++.+|+.+..--...++.+. ...+..|
T Consensus 2 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~--~~~~~id 76 (248)
T PRK10538 2 IVLVTGA-TAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG--DNLYIAQLDVRNRAAIEEMLASLP--AEWRNID 76 (248)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc--cceEEEEecCCCHHHHHHHHHHHH--HHcCCCC
Confidence 3555554 444455544 458899999999877665544332 368888999877432111222211 2224678
Q ss_pred EEEEcC
Q 023482 220 KVVANI 225 (281)
Q Consensus 220 ~Vi~n~ 225 (281)
.+|.+.
T Consensus 77 ~vi~~a 82 (248)
T PRK10538 77 VLVNNA 82 (248)
T ss_pred EEEECC
Confidence 888763
No 457
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=81.60 E-value=12 Score=33.07 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC----CCeEEEEcCccccccccchhhHHHhhc
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~----~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
.++.+|--|.+.|. .+..+++.|++|+..+.+++.++.+.+..... +++..+.+|+.+-+.....++... .
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~--~ 84 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV--E 84 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH--H
Confidence 56788888877664 56677778999999999999988777665432 368899999987554333333332 3
Q ss_pred C-CCCccEEEEcC
Q 023482 214 S-SSGFAKVVANI 225 (281)
Q Consensus 214 ~-~~~~d~Vi~n~ 225 (281)
. .+..|+++.|.
T Consensus 85 ~~~GkidiLvnna 97 (270)
T KOG0725|consen 85 KFFGKIDILVNNA 97 (270)
T ss_pred HhCCCCCEEEEcC
Confidence 3 57899999874
No 458
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.56 E-value=6.4 Score=37.24 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=43.6
Q ss_pred CccccCCHHHHHHHHHHhcC-CCCCEEEEEcCCc-cHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Q 023482 120 GQHYMLNSEINDQLAAAAAV-QEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (281)
Q Consensus 120 g~~~~~~~~~~~~l~~~l~~-~~~~~VLDiGcG~-G~~t~~la~~-~~~v~gvD~s~~~l~~a~~ 181 (281)
...|-+-+...+.+....+. ..+++|+=+|+|. |......++. |++|+.+|+++...+.|+.
T Consensus 179 dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 179 DNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred cccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 33344555666777776554 4788999999995 5444444444 8899999999988877765
No 459
>PRK09291 short chain dehydrogenase; Provisional
Probab=81.44 E-value=8.9 Score=32.81 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=46.0
Q ss_pred CEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
++||=.|++. .++..+ ++.|.+|+++..++.-.+......... .++.++.+|+.+..- +.. .....
T Consensus 3 ~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~--~~~~~ 73 (257)
T PRK09291 3 KTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAID------RAQ--AAEWD 73 (257)
T ss_pred CEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHH------HHH--HhcCC
Confidence 4688888754 444444 445889999999877665555444332 368888999876421 110 11136
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
.|+||.|.
T Consensus 74 id~vi~~a 81 (257)
T PRK09291 74 VDVLLNNA 81 (257)
T ss_pred CCEEEECC
Confidence 79999874
No 460
>PRK07775 short chain dehydrogenase; Provisional
Probab=81.37 E-value=12 Score=32.69 Aligned_cols=81 Identities=10% Similarity=0.049 Sum_probs=49.0
Q ss_pred CCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+.+|=.|+ +|.++..+++ +|.+|+.+..++...+......... .++.++.+|+.+...-...++.+. ...+
T Consensus 10 ~~~vlVtGa-~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~ 86 (274)
T PRK07775 10 RRPALVAGA-SSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAE--EALG 86 (274)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HhcC
Confidence 457888885 4555655554 4889999998876655554444322 378888899876542222222221 1224
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|.+|.|.
T Consensus 87 ~id~vi~~A 95 (274)
T PRK07775 87 EIEVLVSGA 95 (274)
T ss_pred CCCEEEECC
Confidence 678888764
No 461
>PRK06482 short chain dehydrogenase; Provisional
Probab=81.24 E-value=11 Score=32.88 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=48.7
Q ss_pred CEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCc
Q 023482 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~ 218 (281)
++||=.|+ +|.++..++ +.|.+|++++.+++.++..+.... .++.++.+|+.+...-...++-+. ...+..
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~i 77 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG--DRLWVLQLDVTDSAAVRAVVDRAF--AALGRI 77 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--CceEEEEccCCCHHHHHHHHHHHH--HHcCCC
Confidence 46777776 455555554 457899999999887766554432 378899999887542222221110 223567
Q ss_pred cEEEEcC
Q 023482 219 AKVVANI 225 (281)
Q Consensus 219 d~Vi~n~ 225 (281)
|+||.+.
T Consensus 78 d~vi~~a 84 (276)
T PRK06482 78 DVVVSNA 84 (276)
T ss_pred CEEEECC
Confidence 9898864
No 462
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=81.21 E-value=7.7 Score=35.35 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=39.5
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~ 199 (281)
.+.+||=.| |+|.++..+++ .|.+|++++.++.............++++++.+|+.+.
T Consensus 9 ~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 70 (353)
T PLN02896 9 ATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEE 70 (353)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCH
Confidence 456888888 46777776665 47899999887654443333332234788999998764
No 463
>PRK06484 short chain dehydrogenase; Validated
Probab=81.15 E-value=8.1 Score=37.21 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.++++|=.|++.|. ++..+++.|++|+.++.+++.++.+...+. .++.++..|+.+..--...++.+. ...+.
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~g~ 79 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG--PDHHALAMDVSDEAQIREGFEQLH--REFGR 79 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEeccCCHHHHHHHHHHHH--HHhCC
Confidence 46788888877663 444455568899999999887776655442 366778888776432222222221 22357
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
.|++|.|.
T Consensus 80 iD~li~na 87 (520)
T PRK06484 80 IDVLVNNA 87 (520)
T ss_pred CCEEEECC
Confidence 89999874
No 464
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=81.09 E-value=2.6 Score=35.59 Aligned_cols=37 Identities=30% Similarity=0.513 Sum_probs=29.6
Q ss_pred hcCCCCCEEEEEcCCccHHHHHHHHc-C--CEEEEEeCCH
Q 023482 137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQ 173 (281)
Q Consensus 137 l~~~~~~~VLDiGcG~G~~t~~la~~-~--~~v~gvD~s~ 173 (281)
.+++++.+|+|+-.|.|++|..++.. + +.|+++=..+
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 45678999999999999999999886 2 3777775543
No 465
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.05 E-value=7.8 Score=33.69 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=44.6
Q ss_pred CCCEEEEEcC-CccHH----HHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGP-GTGSL----TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGc-G~G~~----t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++++|=.|. |++.+ +..+++.|++|+.++......+.+++.....+...++.+|+.+..--+..++.+. ...
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLG--QHW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHH--HHh
Confidence 4678999996 34433 4444556889988765422222222221222233467788876543333333332 233
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 83 g~iD~lvnnA 92 (260)
T PRK06997 83 DGLDGLVHSI 92 (260)
T ss_pred CCCcEEEEcc
Confidence 6789999874
No 466
>PRK11524 putative methyltransferase; Provisional
Probab=81.04 E-value=1.5 Score=39.21 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCCCcc
Q 023482 187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (281)
Q Consensus 187 ~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P~~~ 229 (281)
++.+++++|..++.-. ...+++|+||.+|||..
T Consensus 7 ~~~~i~~gD~~~~l~~----------l~~~siDlIitDPPY~~ 39 (284)
T PRK11524 7 EAKTIIHGDALTELKK----------IPSESVDLIFADPPYNI 39 (284)
T ss_pred CCCEEEeccHHHHHHh----------cccCcccEEEECCCccc
Confidence 3568999999875210 23468999999999964
No 467
>PRK12827 short chain dehydrogenase; Provisional
Probab=80.99 E-value=12 Score=31.66 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=47.1
Q ss_pred CCEEEEEcCCccHHHHHH----HHcCCEEEEEeC----CHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhh
Q 023482 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEK----DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERR 212 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~----s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~ 212 (281)
+.++|=.|. +|.++..+ +++|.+|+.++. +++..+......... .++.++.+|+.+.......++.+.
T Consensus 6 ~~~ilItGa-sg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~-- 82 (249)
T PRK12827 6 SRRVLITGG-SGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGV-- 82 (249)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--
Confidence 467887774 45555544 445889998765 344444444444332 378899999887543222232221
Q ss_pred cCCCCccEEEEcC
Q 023482 213 KSSSGFAKVVANI 225 (281)
Q Consensus 213 ~~~~~~d~Vi~n~ 225 (281)
...+..|.||.+.
T Consensus 83 ~~~~~~d~vi~~a 95 (249)
T PRK12827 83 EEFGRLDILVNNA 95 (249)
T ss_pred HHhCCCCEEEECC
Confidence 1235689998874
No 468
>PRK07041 short chain dehydrogenase; Provisional
Probab=80.44 E-value=7.7 Score=32.64 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=43.2
Q ss_pred CccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccEEEEcCC
Q 023482 151 GTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (281)
Q Consensus 151 G~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~Vi~n~P 226 (281)
|+|.++..+ ++.|.+|+.++.+++-++......+...+++++.+|+.+..--...+ ...+..|.+|.|..
T Consensus 5 as~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~------~~~~~id~li~~ag 78 (230)
T PRK07041 5 GSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFF------AEAGPFDHVVITAA 78 (230)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH------HhcCCCCEEEECCC
Confidence 344444444 44588999999998766655544433347888999987653221111 12256788888753
No 469
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=80.33 E-value=5.3 Score=36.64 Aligned_cols=51 Identities=25% Similarity=0.369 Sum_probs=39.4
Q ss_pred HHHHHhcCCCCCEEEEEcCC-ccHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHH
Q 023482 132 QLAAAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER 182 (281)
Q Consensus 132 ~l~~~l~~~~~~~VLDiGcG-~G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~~ 182 (281)
..+..++.+++++|.=+||| .|..++.-|.. ++ .+++||+++.-+++|++-
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 34556677899999999998 45555555554 44 999999999999999864
No 470
>PRK09135 pteridine reductase; Provisional
Probab=80.07 E-value=13 Score=31.39 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCC-HHHHHHHHHHhcCC--CCeEEEEcCccccccccchhhHHHhhc
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKD-QHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s-~~~l~~a~~~~~~~--~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
.+++||=.|+ +|.++..++ +.+.+|++++.+ +.-.+.....+... .++.++.+|+.+..-....++.+. .
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~ 81 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACV--A 81 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHH--H
Confidence 4568999996 455565554 458899999975 33333333333221 368889999977542222222211 1
Q ss_pred CCCCccEEEEcC
Q 023482 214 SSSGFAKVVANI 225 (281)
Q Consensus 214 ~~~~~d~Vi~n~ 225 (281)
..+..|.||.+.
T Consensus 82 ~~~~~d~vi~~a 93 (249)
T PRK09135 82 AFGRLDALVNNA 93 (249)
T ss_pred HcCCCCEEEECC
Confidence 224578899875
No 471
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=80.01 E-value=8.9 Score=37.64 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=36.6
Q ss_pred CEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCcccc
Q 023482 143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~ 199 (281)
++|+=+ |.|..+..+++ .+.+++.+|.|++.++.+++. ...+++||+.+.
T Consensus 418 ~hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~ 471 (558)
T PRK10669 418 NHALLV--GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANE 471 (558)
T ss_pred CCEEEE--CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCH
Confidence 345554 55556666655 367999999999999888742 578999999874
No 472
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.65 E-value=13 Score=31.67 Aligned_cols=80 Identities=13% Similarity=0.184 Sum_probs=46.9
Q ss_pred CEEEEEcCCccHHHHHHH----HcCCEEEEEeCC-HHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 143 ~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s-~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
+.||=.| |+|.++..++ +.|.+|+.++.. +...+...+.++.. .++.++.+|+.+..-....++.+. ...+
T Consensus 3 k~vlItG-~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 79 (256)
T PRK12745 3 PVALVTG-GRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQ--AAWG 79 (256)
T ss_pred cEEEEeC-CCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH--HhcC
Confidence 4577667 4666565554 458899999965 33333333443322 378999999987442222233222 1225
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
..|+||.|.
T Consensus 80 ~id~vi~~a 88 (256)
T PRK12745 80 RIDCLVNNA 88 (256)
T ss_pred CCCEEEECC
Confidence 689999874
No 473
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=79.44 E-value=6.9 Score=27.76 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=19.2
Q ss_pred CCCCEEEEEcCCccH-HHHHHHHc---CCEEEEEeCCH
Q 023482 140 QEGDIVLEIGPGTGS-LTNVLLNA---GATVLAIEKDQ 173 (281)
Q Consensus 140 ~~~~~VLDiGcG~G~-~t~~la~~---~~~v~gvD~s~ 173 (281)
..+++||=|||-+|+ ++..++.. +++.+||-..+
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 345899999999998 33333332 67888887654
No 474
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.35 E-value=14 Score=31.90 Aligned_cols=83 Identities=14% Similarity=0.164 Sum_probs=47.1
Q ss_pred CCCEEEEEcCC----ccH-HHHHHHHcCCEEEEEeCC-----------HHHHHHHHHHhcCCC-CeEEEEcCcccccccc
Q 023482 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKD-----------QHMVGLVRERFASID-QLKVLQEDFVKCHIRS 203 (281)
Q Consensus 141 ~~~~VLDiGcG----~G~-~t~~la~~~~~v~gvD~s-----------~~~l~~a~~~~~~~~-~v~~~~gD~~~~~~~d 203 (281)
.+++||=.|++ .|. ++..+++.|++|+.++.+ ..-.....+.+...+ ++.++.+|+.+..-..
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~ 84 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPK 84 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence 56789999985 443 344555568888877532 222222333333333 7888889987644322
Q ss_pred chhhHHHhhcCCCCccEEEEcC
Q 023482 204 HMLSLFERRKSSSGFAKVVANI 225 (281)
Q Consensus 204 ~~~d~v~~~~~~~~~d~Vi~n~ 225 (281)
..++.+. ...+..|++|.|.
T Consensus 85 ~~~~~~~--~~~g~id~li~~a 104 (256)
T PRK12859 85 ELLNKVT--EQLGYPHILVNNA 104 (256)
T ss_pred HHHHHHH--HHcCCCcEEEECC
Confidence 3333332 2235679999875
No 475
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.34 E-value=13 Score=31.58 Aligned_cols=82 Identities=10% Similarity=0.196 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCEEEEE-eCCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gv-D~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.++++|=.|.+ |.++..++ +.|.+|+.+ +.+++..+.+.+..... .++.++.+|+.+.......++.+. ..
T Consensus 3 ~~~~vlItGa~-g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~ 79 (250)
T PRK08063 3 SGKVALVTGSS-RGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQID--EE 79 (250)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HH
Confidence 34678877764 55555554 457787764 55666555444444332 378888999876542222333322 12
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+..|++|.|.
T Consensus 80 ~~~id~vi~~a 90 (250)
T PRK08063 80 FGRLDVFVNNA 90 (250)
T ss_pred cCCCCEEEECC
Confidence 24679999874
No 476
>PRK09134 short chain dehydrogenase; Provisional
Probab=79.31 E-value=15 Score=31.55 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeC-CHHHHHHHHHHhcC-CCCeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEK-DQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~-s~~~l~~a~~~~~~-~~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.++++|=.|.+ |.++..++ +.|.+|+.++. +.+..+.+...... ..++.++.+|+.+..-....++.+. ..
T Consensus 8 ~~k~vlItGas-~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~--~~ 84 (258)
T PRK09134 8 APRAALVTGAA-RRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARAS--AA 84 (258)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HH
Confidence 35678888865 55555544 45778887765 44444444443332 2368889999887543333333332 12
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+..|+||.|.
T Consensus 85 ~~~iD~vi~~a 95 (258)
T PRK09134 85 LGPITLLVNNA 95 (258)
T ss_pred cCCCCEEEECC
Confidence 35689999875
No 477
>PRK06179 short chain dehydrogenase; Provisional
Probab=79.17 E-value=8.8 Score=33.27 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=47.2
Q ss_pred CCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
++.||=.|+ +|.++..+++ .|.+|++++.++.... ...+++++.+|+.+..--...++.+. ...+.
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~D~~d~~~~~~~~~~~~--~~~g~ 73 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARAGYRVFGTSRNPARAA-------PIPGVELLELDVTDDASVQAAVDEVI--ARAGR 73 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCChhhcc-------ccCCCeeEEeecCCHHHHHHHHHHHH--HhCCC
Confidence 457888885 4556665554 4889999999865432 12368889999876532222222221 23356
Q ss_pred ccEEEEcCC
Q 023482 218 FAKVVANIP 226 (281)
Q Consensus 218 ~d~Vi~n~P 226 (281)
.|++|.|.-
T Consensus 74 ~d~li~~ag 82 (270)
T PRK06179 74 IDVLVNNAG 82 (270)
T ss_pred CCEEEECCC
Confidence 899998753
No 478
>PRK08263 short chain dehydrogenase; Provisional
Probab=79.14 E-value=14 Score=32.19 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=48.1
Q ss_pred CCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
++.||=.|+ +|.++..++ +.|.+|+.++.++..++....... +++.++.+|+.+..--...++-+. ...+.
T Consensus 3 ~k~vlItGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 77 (275)
T PRK08263 3 EKVWFITGA-SRGFGRAWTEAALERGDRVVATARDTATLADLAEKYG--DRLLPLALDVTDRAAVFAAVETAV--EHFGR 77 (275)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcc--CCeeEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence 356788884 455555554 458899999999887765554432 367788888876432111111111 22356
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
+|.||.+.
T Consensus 78 ~d~vi~~a 85 (275)
T PRK08263 78 LDIVVNNA 85 (275)
T ss_pred CCEEEECC
Confidence 79998874
No 479
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=78.59 E-value=9.5 Score=32.80 Aligned_cols=54 Identities=24% Similarity=0.298 Sum_probs=36.4
Q ss_pred EEEEEcCCc-c-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccc
Q 023482 144 IVLEIGPGT-G-SLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (281)
Q Consensus 144 ~VLDiGcG~-G-~~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~ 200 (281)
+++=+|||. | .++..|.+.|..|+.||.+++.++...... -...++++|+.+..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~---~~~~~v~gd~t~~~ 57 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE---LDTHVVIGDATDED 57 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh---cceEEEEecCCCHH
Confidence 456677763 2 234444455889999999999988744321 15688999988753
No 480
>PRK07985 oxidoreductase; Provisional
Probab=78.55 E-value=13 Score=32.99 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCC--HHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD--QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s--~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.++++|-.|.+.|. ++..|++.|++|+.++.+ .+..+.+....... .++.++.+|+.+.......++.+. ..
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~ 125 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAH--KA 125 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHH--HH
Confidence 46789999965433 344445568899888754 23344444333332 367888999877532222222221 22
Q ss_pred CCCccEEEEcC
Q 023482 215 SSGFAKVVANI 225 (281)
Q Consensus 215 ~~~~d~Vi~n~ 225 (281)
.+..|++|.|.
T Consensus 126 ~g~id~lv~~A 136 (294)
T PRK07985 126 LGGLDIMALVA 136 (294)
T ss_pred hCCCCEEEECC
Confidence 35678888764
No 481
>PRK06483 dihydromonapterin reductase; Provisional
Probab=78.52 E-value=13 Score=31.52 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=44.7
Q ss_pred CEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482 143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (281)
Q Consensus 143 ~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d 219 (281)
+++|-.|++.|. ++..+++.|.+|+.++.++.-... .+... .+.++.+|+.+..-....++.+. ...+..|
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~---~~~~~-~~~~~~~D~~~~~~~~~~~~~~~--~~~~~id 76 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAID---GLRQA-GAQCIQADFSTNAGIMAFIDELK--QHTDGLR 76 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHH---HHHHc-CCEEEEcCCCCHHHHHHHHHHHH--hhCCCcc
Confidence 467878876543 334445568899999988653321 11111 36788888876443222333321 2235689
Q ss_pred EEEEcC
Q 023482 220 KVVANI 225 (281)
Q Consensus 220 ~Vi~n~ 225 (281)
++|.|.
T Consensus 77 ~lv~~a 82 (236)
T PRK06483 77 AIIHNA 82 (236)
T ss_pred EEEECC
Confidence 888874
No 482
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=78.35 E-value=9.5 Score=35.60 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHH---HHHHhcCCCCeEEEEcCccccccccchhhHHHhhc
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGL---VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~---a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
.+.+||=.| |+|.++..+++ .|.+|++++.++.-... ........++++++.+|+.+..... ..+. .
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~---~~~~--~ 132 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLR---KVLF--S 132 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHH---HHHH--H
Confidence 456899888 78887777665 47899999988754321 1111112247899999998743211 1111 0
Q ss_pred CCCCccEEEEcC
Q 023482 214 SSSGFAKVVANI 225 (281)
Q Consensus 214 ~~~~~d~Vi~n~ 225 (281)
....+|+||.+.
T Consensus 133 ~~~~~D~Vi~~a 144 (390)
T PLN02657 133 EGDPVDVVVSCL 144 (390)
T ss_pred hCCCCcEEEECC
Confidence 011579998753
No 483
>PRK12744 short chain dehydrogenase; Provisional
Probab=78.33 E-value=13 Score=31.89 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCC----HHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHh
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKD----QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFER 211 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s----~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~ 211 (281)
.++++|=.|++. .++..+++ .|.+|+.+..+ .+..+...+.+... .++.++.+|+.+..--...++.+.
T Consensus 7 ~~k~vlItGa~~-gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~- 84 (257)
T PRK12744 7 KGKVVLIAGGAK-NLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK- 84 (257)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH-
Confidence 356888888544 45555544 47787777543 33333333333222 378889999876542222222221
Q ss_pred hcCCCCccEEEEcC
Q 023482 212 RKSSSGFAKVVANI 225 (281)
Q Consensus 212 ~~~~~~~d~Vi~n~ 225 (281)
...+..|++|.|.
T Consensus 85 -~~~~~id~li~~a 97 (257)
T PRK12744 85 -AAFGRPDIAINTV 97 (257)
T ss_pred -HhhCCCCEEEECC
Confidence 2235689998764
No 484
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=77.96 E-value=7.6 Score=35.34 Aligned_cols=77 Identities=18% Similarity=0.035 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
.+++||=.| |+|.++..+++ .|.+|++++.++..............+++++.+|+.+.... .+++ ...
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~~----~~~ 74 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKL---RKAI----AEF 74 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHH---HHHH----hhc
Confidence 356788887 56666666654 47899999987654332222222123677888998764311 1111 112
Q ss_pred CccEEEEcC
Q 023482 217 GFAKVVANI 225 (281)
Q Consensus 217 ~~d~Vi~n~ 225 (281)
.+|.||.+.
T Consensus 75 ~~d~vih~A 83 (349)
T TIGR02622 75 KPEIVFHLA 83 (349)
T ss_pred CCCEEEECC
Confidence 468888653
No 485
>PRK12828 short chain dehydrogenase; Provisional
Probab=77.87 E-value=17 Score=30.46 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCC
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~ 216 (281)
++++||=.|. +|.++..++ +.|.+|++++.++.-.......... ..++++.+|+.+.......++.+. ...+
T Consensus 6 ~~k~vlItGa-tg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 81 (239)
T PRK12828 6 QGKVVAITGG-FGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA-DALRIGGIDLVDPQAARRAVDEVN--RQFG 81 (239)
T ss_pred CCCEEEEECC-CCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh-cCceEEEeecCCHHHHHHHHHHHH--HHhC
Confidence 3567887774 455555544 4588999999987654443333322 256777888876432222222221 1224
Q ss_pred CccEEEEcCC
Q 023482 217 GFAKVVANIP 226 (281)
Q Consensus 217 ~~d~Vi~n~P 226 (281)
..|+||.+..
T Consensus 82 ~~d~vi~~ag 91 (239)
T PRK12828 82 RLDALVNIAG 91 (239)
T ss_pred CcCEEEECCc
Confidence 6789888754
No 486
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=77.78 E-value=29 Score=31.56 Aligned_cols=43 Identities=26% Similarity=0.402 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHc-CCEEEEEeC---CHHHHHHHHH
Q 023482 139 VQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEK---DQHMVGLVRE 181 (281)
Q Consensus 139 ~~~~~~VLDiGcG-~G~~t~~la~~-~~~v~gvD~---s~~~l~~a~~ 181 (281)
..++++||=+|+| .|.++..+++. +++|++++. ++.-.+.+++
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 4577899999886 35566666665 779999987 6777777664
No 487
>PRK07832 short chain dehydrogenase; Provisional
Probab=77.58 E-value=14 Score=32.07 Aligned_cols=79 Identities=8% Similarity=0.067 Sum_probs=45.1
Q ss_pred EEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 144 IVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~--~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
++|=.|.+ |.++..+ ++.|++|+.++.+++.++.+.+.+...+ .+.++.+|+.+.......++.+. ...+.
T Consensus 2 ~vlItGas-~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 78 (272)
T PRK07832 2 RCFVTGAA-SGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIH--AAHGS 78 (272)
T ss_pred EEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHH--HhcCC
Confidence 45556654 3444444 4458899999999877766655443222 34557788766432222222221 22356
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
.|++|.|.
T Consensus 79 id~lv~~a 86 (272)
T PRK07832 79 MDVVMNIA 86 (272)
T ss_pred CCEEEECC
Confidence 89999875
No 488
>PRK06128 oxidoreductase; Provisional
Probab=77.58 E-value=14 Score=32.84 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCccHHHHHH----HHcCCEEEEEeCCHH--HHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhc
Q 023482 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQH--MVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~--~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
.+++||=.|++. .++..+ ++.|++|+.+..+++ ..+...+.+... .++.++.+|+.+.......++.+. .
T Consensus 54 ~~k~vlITGas~-gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~ 130 (300)
T PRK06128 54 QGRKALITGADS-GIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAV--K 130 (300)
T ss_pred CCCEEEEecCCC-cHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHH--H
Confidence 467899998544 444444 445888887766532 223333333322 367888899877543222222221 2
Q ss_pred CCCCccEEEEcCC
Q 023482 214 SSSGFAKVVANIP 226 (281)
Q Consensus 214 ~~~~~d~Vi~n~P 226 (281)
..+..|++|.|.-
T Consensus 131 ~~g~iD~lV~nAg 143 (300)
T PRK06128 131 ELGGLDILVNIAG 143 (300)
T ss_pred HhCCCCEEEECCc
Confidence 2356899998753
No 489
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=77.36 E-value=18 Score=30.76 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEe-CCHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcC
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIE-KDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD-~s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~ 214 (281)
.++++|=.| |+|.++..+++ ++.+|+.+. .+++..+......... .++.++.+|+.+..-.+..++.+. ..
T Consensus 5 ~~~~~lItG-~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~ 81 (247)
T PRK12935 5 NGKVAIVTG-GAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAV--NH 81 (247)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HH
Confidence 357899999 56777776655 478887654 3444444333333332 378899999887543222222221 12
Q ss_pred CCCccEEEEcCC
Q 023482 215 SSGFAKVVANIP 226 (281)
Q Consensus 215 ~~~~d~Vi~n~P 226 (281)
.+..|.||.+..
T Consensus 82 ~~~id~vi~~ag 93 (247)
T PRK12935 82 FGKVDILVNNAG 93 (247)
T ss_pred cCCCCEEEECCC
Confidence 256799998753
No 490
>PRK07856 short chain dehydrogenase; Provisional
Probab=77.19 E-value=12 Score=31.96 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.++++|=.|++.|. ++..|++.|.+|+.++.++.. . ....++.++.+|+.+..-....++.+. ...+.
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~----~---~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 75 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE----T---VDGRPAEFHAADVRDPDQVAALVDAIV--ERHGR 75 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh----h---hcCCceEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence 46788888865443 344455568899999998754 1 112378889999876432222222221 22356
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
+|++|.|.
T Consensus 76 id~vi~~a 83 (252)
T PRK07856 76 LDVLVNNA 83 (252)
T ss_pred CCEEEECC
Confidence 89999874
No 491
>PRK08177 short chain dehydrogenase; Provisional
Probab=76.89 E-value=9 Score=32.25 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=43.9
Q ss_pred EEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCccE
Q 023482 144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (281)
Q Consensus 144 ~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d~ 220 (281)
+||=.|+..|. ++..|++.|.+|++++.++.-.+.++. .+++.+..+|+.+....+..++.+ ....+|+
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~----~~~~id~ 74 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA----LPGVHIEKLDMNDPASLDQLLQRL----QGQRFDL 74 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh----ccccceEEcCCCCHHHHHHHHHHh----hcCCCCE
Confidence 56766754332 344455568899999998765543322 236777888877643222222222 2246899
Q ss_pred EEEcC
Q 023482 221 VVANI 225 (281)
Q Consensus 221 Vi~n~ 225 (281)
||.|.
T Consensus 75 vi~~a 79 (225)
T PRK08177 75 LFVNA 79 (225)
T ss_pred EEEcC
Confidence 99875
No 492
>PRK05693 short chain dehydrogenase; Provisional
Probab=76.68 E-value=14 Score=32.17 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=44.0
Q ss_pred EEEEEcCCccHHHHHH----HHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCCcc
Q 023482 144 IVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (281)
Q Consensus 144 ~VLDiGcG~G~~t~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~~d 219 (281)
++|=.|++ |.++..+ ++.|.+|++++.++..++.... .++.++.+|+.+..-....++.+. ...+..|
T Consensus 3 ~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~id 74 (274)
T PRK05693 3 VVLITGCS-SGIGRALADAFKAAGYEVWATARKAEDVEALAA-----AGFTAVQLDVNDGAALARLAEELE--AEHGGLD 74 (274)
T ss_pred EEEEecCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----CCCeEEEeeCCCHHHHHHHHHHHH--HhcCCCC
Confidence 56767753 4444444 4458899999999876654432 246778888766432211222221 2235689
Q ss_pred EEEEcCC
Q 023482 220 KVVANIP 226 (281)
Q Consensus 220 ~Vi~n~P 226 (281)
+||.|.-
T Consensus 75 ~vi~~ag 81 (274)
T PRK05693 75 VLINNAG 81 (274)
T ss_pred EEEECCC
Confidence 9998753
No 493
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=76.65 E-value=10 Score=34.53 Aligned_cols=46 Identities=33% Similarity=0.566 Sum_probs=36.2
Q ss_pred HhcCCCCCEEEEEcCCc-cHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Q 023482 136 AAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (281)
Q Consensus 136 ~l~~~~~~~VLDiGcG~-G~~t~~la~~-~~~v~gvD~s~~~l~~a~~ 181 (281)
...+.++++||=.|+|. |..+..+++. |.+|+++|.+++.++.+++
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 35567889999999864 6666666665 7799999999999888865
No 494
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=76.48 E-value=9.7 Score=34.10 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCccHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHhc--C-CCCeEEEEcCccccccccchhhHHHhhc
Q 023482 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFA--S-IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la~----~~~~v~gvD~s~~~l~~a~~~~~--~-~~~v~~~~gD~~~~~~~d~~~d~v~~~~ 213 (281)
.+++||=.| |+|.++..+++ .|.+|+++..++........... . ..+++++.+|+.+..... +.+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~---~~~---- 75 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFE---LAI---- 75 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHH---HHH----
Confidence 457888888 56777766665 47899888777654333322211 1 137889999998753211 111
Q ss_pred CCCCccEEEEcC
Q 023482 214 SSSGFAKVVANI 225 (281)
Q Consensus 214 ~~~~~d~Vi~n~ 225 (281)
...|+||.+.
T Consensus 76 --~~~d~vih~A 85 (325)
T PLN02989 76 --DGCETVFHTA 85 (325)
T ss_pred --cCCCEEEEeC
Confidence 2468888764
No 495
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=75.91 E-value=20 Score=30.85 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeC-CHHHHHHHHHHhcCC-CCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~-~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
.++++|=.|.+.|. ++..+++.|.+|+.+.. +++..+.+...+... .++.++.+|+.+.......++.+. ...
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~--~~~ 83 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAV--KEF 83 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHH--HHc
Confidence 46788888866543 33334455888877765 344444444444322 367888999876532222222221 223
Q ss_pred CCccEEEEcC
Q 023482 216 SGFAKVVANI 225 (281)
Q Consensus 216 ~~~d~Vi~n~ 225 (281)
+..|++|.|.
T Consensus 84 g~id~lv~~a 93 (261)
T PRK08936 84 GTLDVMINNA 93 (261)
T ss_pred CCCCEEEECC
Confidence 5689998874
No 496
>PRK06523 short chain dehydrogenase; Provisional
Probab=75.88 E-value=14 Score=31.70 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCccH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEcCccccccccchhhHHHhhcCCCC
Q 023482 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (281)
Q Consensus 141 ~~~~VLDiGcG~G~---~t~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~~~ 217 (281)
.+++||-.|++.|. ++..+++.|.+|++++.++.- .. .+++.++.+|+.+..-....++.+. ...+.
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~------~~--~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 77 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD------DL--PEGVEFVAADLTTAEGCAAVARAVL--ERLGG 77 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh------hc--CCceeEEecCCCCHHHHHHHHHHHH--HHcCC
Confidence 46789999965442 333444558899999988642 11 1367889999877542222222221 22356
Q ss_pred ccEEEEcC
Q 023482 218 FAKVVANI 225 (281)
Q Consensus 218 ~d~Vi~n~ 225 (281)
.|+||.|.
T Consensus 78 id~vi~~a 85 (260)
T PRK06523 78 VDILVHVL 85 (260)
T ss_pred CCEEEECC
Confidence 89888764
No 497
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=75.47 E-value=37 Score=26.59 Aligned_cols=41 Identities=24% Similarity=0.483 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCccHHHHHHH----HcC-CEEEEEeCCHHHHHHHHHHh
Q 023482 141 EGDIVLEIGPGTGSLTNVLL----NAG-ATVLAIEKDQHMVGLVRERF 183 (281)
Q Consensus 141 ~~~~VLDiGcG~G~~t~~la----~~~-~~v~gvD~s~~~l~~a~~~~ 183 (281)
.+.+|+=+|+| .++..++ +.+ .+|+.+|.+++..+...+..
T Consensus 18 ~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 18 KGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 46789999986 4444443 344 68999999988776655444
No 498
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=75.06 E-value=20 Score=32.12 Aligned_cols=45 Identities=27% Similarity=0.379 Sum_probs=33.3
Q ss_pred hcCCCCCEEEEEcCCc-cHHHHHHHHc-CC-EEEEEeCCHHHHHHHHH
Q 023482 137 AAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRE 181 (281)
Q Consensus 137 l~~~~~~~VLDiGcG~-G~~t~~la~~-~~-~v~gvD~s~~~l~~a~~ 181 (281)
+...++++||-.|+|. |..+..+++. |. ++++++.++...+.+++
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 3333678888888775 6666667765 76 89999999888886654
No 499
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=74.87 E-value=15 Score=33.61 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=37.9
Q ss_pred HhcCCCCCEEEEEcC--CccHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHh
Q 023482 136 AAAVQEGDIVLEIGP--GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF 183 (281)
Q Consensus 136 ~l~~~~~~~VLDiGc--G~G~~t~~la~~-~~~v~gvD~s~~~l~~a~~~~ 183 (281)
...+.++++||=.|+ |.|.++..+++. |++|++++.+++-.+.+++.+
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l 203 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL 203 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc
Confidence 345678899999997 477788888876 889999999998888776443
No 500
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=74.82 E-value=21 Score=30.28 Aligned_cols=82 Identities=10% Similarity=-0.037 Sum_probs=44.1
Q ss_pred CCEEEEEcCCccHHHHHH----HHcCCEEEEE-eCCHHHHHHHHHHhcC-CCCeEEEEcCccccccccchhhHHHhhcCC
Q 023482 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAI-EKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (281)
Q Consensus 142 ~~~VLDiGcG~G~~t~~l----a~~~~~v~gv-D~s~~~l~~a~~~~~~-~~~v~~~~gD~~~~~~~d~~~d~v~~~~~~ 215 (281)
++.+|=.|++. .++..+ ++.|++|+.+ +.++...+........ ..++.++.+|+.+..-....++.+. ...
T Consensus 3 ~k~~lVtG~s~-giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 79 (246)
T PRK12938 3 QRIAYVTGGMG-GIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVK--AEV 79 (246)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHh
Confidence 46778888744 444444 4458887774 3333333222222222 2367788899877543222222221 123
Q ss_pred CCccEEEEcCC
Q 023482 216 SGFAKVVANIP 226 (281)
Q Consensus 216 ~~~d~Vi~n~P 226 (281)
+..|+||.|.-
T Consensus 80 ~~id~li~~ag 90 (246)
T PRK12938 80 GEIDVLVNNAG 90 (246)
T ss_pred CCCCEEEECCC
Confidence 56899998753
Done!