Query 023484
Match_columns 281
No_of_seqs 107 out of 476
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:23:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1578 Uncharacterized conser 100.0 2.8E-60 6E-65 423.0 21.7 238 9-277 48-285 (285)
2 PLN02902 pantothenate kinase 100.0 5.7E-55 1.2E-59 440.4 23.5 277 2-280 569-875 (876)
3 PF01937 DUF89: Protein of unk 100.0 1.1E-55 2.4E-60 418.2 16.2 254 13-272 73-354 (355)
4 KOG4584 Uncharacterized conser 100.0 1.4E-47 2.9E-52 345.0 18.9 273 2-274 74-348 (348)
5 KOG3870 Uncharacterized conser 100.0 6.5E-48 1.4E-52 358.8 14.2 248 12-263 118-403 (434)
6 TIGR03006 pepcterm_polyde poly 54.9 1E+02 0.0023 28.1 9.3 106 112-229 28-134 (265)
7 PRK09570 rpoH DNA-directed RNA 45.5 13 0.00028 28.0 1.4 23 255-277 40-62 (79)
8 cd01080 NAD_bind_m-THF_DH_Cycl 45.0 1.2E+02 0.0026 25.8 7.6 34 126-164 44-77 (168)
9 KOG3218 RNA polymerase, 25-kDa 44.6 12 0.00026 33.0 1.3 21 255-275 171-191 (208)
10 PF01191 RNA_pol_Rpb5_C: RNA p 43.7 15 0.00033 27.3 1.6 22 255-276 37-58 (74)
11 COG2012 RPB5 DNA-directed RNA 39.9 19 0.00042 27.0 1.6 19 257-275 45-63 (80)
12 PF08328 ASL_C: Adenylosuccina 38.0 41 0.00089 27.1 3.3 27 16-42 54-80 (115)
13 PF11576 DUF3236: Protein of u 34.5 23 0.0005 29.7 1.4 29 209-237 75-104 (154)
14 COG1737 RpiR Transcriptional r 33.7 3.7E+02 0.008 24.5 12.9 123 31-164 90-213 (281)
15 COG0698 RpiB Ribose 5-phosphat 32.8 58 0.0013 27.5 3.6 31 128-161 2-32 (151)
16 PRK11557 putative DNA-binding 31.7 3.8E+02 0.0082 24.0 10.9 95 64-164 116-211 (278)
17 PF07592 DDE_Tnp_ISAZ013: Rhod 29.3 71 0.0015 30.2 3.9 52 108-160 161-219 (311)
18 cd07187 YvcK_like family of mo 28.5 92 0.002 29.3 4.6 24 213-237 163-186 (308)
19 PF10552 ORF6C: ORF6C domain; 27.6 1.3E+02 0.0029 23.8 4.8 33 16-49 70-102 (116)
20 COG0062 Uncharacterized conser 27.5 1.7E+02 0.0036 25.9 5.8 44 126-174 49-97 (203)
21 KOG3349 Predicted glycosyltran 26.7 98 0.0021 26.5 3.9 23 214-236 69-91 (170)
22 PLN03111 DNA-directed RNA poly 26.0 40 0.00088 29.9 1.6 23 255-277 169-191 (206)
23 PHA00687 hypothetical protein 25.9 1.2E+02 0.0026 20.4 3.5 37 3-41 4-40 (56)
24 PRK12446 undecaprenyldiphospho 25.6 1.3E+02 0.0028 28.4 5.1 40 127-167 2-41 (352)
25 PTZ00061 DNA-directed RNA poly 25.6 41 0.00089 29.9 1.6 22 255-276 168-189 (205)
26 PF01522 Polysacc_deac_1: Poly 25.4 2.2E+02 0.0048 21.5 5.7 100 112-227 18-119 (123)
27 KOG3374 Cellular repressor of 25.0 26 0.00056 30.5 0.2 58 157-237 64-123 (210)
28 PF00070 Pyr_redox: Pyridine n 24.3 2.7E+02 0.0058 19.8 5.7 38 147-185 14-52 (80)
29 COG4019 Uncharacterized protei 21.7 86 0.0019 25.9 2.6 16 223-238 91-106 (156)
30 PRK13512 coenzyme A disulfide 21.4 3.1E+02 0.0067 26.5 7.0 51 112-168 134-184 (438)
31 PF04101 Glyco_tran_28_C: Glyc 21.2 41 0.0009 27.6 0.7 20 217-236 64-83 (167)
32 COG1921 SelA Selenocysteine sy 20.8 1.9E+02 0.0042 28.3 5.2 90 128-237 133-225 (395)
33 COG4069 Uncharacterized protei 20.7 1.4E+02 0.0031 28.2 4.1 67 212-278 253-320 (367)
34 PRK14175 bifunctional 5,10-met 20.3 2.9E+02 0.0064 25.7 6.2 43 115-164 143-191 (286)
35 PHA02053 hypothetical protein 20.1 85 0.0018 24.7 2.1 38 200-240 56-93 (115)
No 1
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.8e-60 Score=422.96 Aligned_cols=238 Identities=24% Similarity=0.277 Sum_probs=218.8
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhccchhhhh
Q 023484 9 GGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAE 88 (281)
Q Consensus 9 ~~~pec~l~~~~~~~~~~~~g~~DPf~~~K~~~n~~al~~~~~l~~~l~~~~~~~~~~~~~lr~al~GN~~Dl~~~~~~~ 88 (281)
.+|+. +.+++||.+++.+|+.|||++.|+++|+.|+++++.+++.+ ++..++|.+++++|+.||.||||+.+..
T Consensus 48 ~~~a~--~~t~ihr~v~k~~g~eDPyke~K~r~NeiA~~vl~~vr~~~---~~~~~dl~~Avk~ai~GN~iDfgv~G~~- 121 (285)
T COG1578 48 AVPAI--AGTLIHREVYKILGNEDPYKEYKRRANEIALKVLPKVRENI---EDTPEDLKTAVKLAIVGNVIDFGVLGFS- 121 (285)
T ss_pred CCcHH--HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHhcceeeccccCC-
Confidence 35566 99999999999999999999999999999999999999843 4455789999999999999999998732
Q ss_pred hhcccCCCHHHHhhhhCCCCCCcCcHHHHHHHhccCCCCeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecCCCcc
Q 023484 89 VFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSI 168 (281)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P~v 168 (281)
.+++++.++++++.++.+||++.+.+.|++ + +|+||+||||| |+||++ |++.+.++|.+|+++|||+||+
T Consensus 122 -----~~~lee~~~~~~~~~l~i~d~~k~~~~l~~--a-~VlYl~DNaGE-i~FD~v-lie~ik~~~~~vv~vVrg~PIl 191 (285)
T COG1578 122 -----PFDLEEEVEKLLDAELYIDDSPKLLELLKN--A-SVLYLTDNAGE-IVFDKV-LIEVIKELGKKVVVVVRGGPIL 191 (285)
T ss_pred -----HhHHHHHHHHhhcCcccccchHHHHHHhcc--C-cEEEEecCCcc-HHHHHH-HHHHHHhcCCceEEEEcCCcee
Confidence 378999999999999999999999999975 3 99999999999 999997 9999999999999999999999
Q ss_pred ccCChHHHHHHHHHhhhhhhhhccccccceeecccCCcccCcCcccccHHHHHHhccccEEEEecCCCCCcccccccccc
Q 023484 169 NDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQFKC 248 (281)
Q Consensus 169 nDvT~~D~~~~L~~l~~~d~~l~~l~~~~~~vi~~G~~~~g~~l~~~s~el~~~l~~ADLVI~KG~~Ny~~~~~~~~~~~ 248 (281)
||||++|+... |+++ .++||+||++.+|..+.++|.||++.|.+||+||+|||||| |+.....++
T Consensus 192 nDaT~EDak~~------------~i~~-i~~vittG~~~vGi~l~d~s~Ef~~~f~~adlIIaKG~gNf-E~LsE~~~~- 256 (285)
T COG1578 192 NDATMEDAKEA------------GIDE-IAKVITTGSDIVGIWLEDVSEEFREAFESADLIIAKGQGNF-ETLSEEEDK- 256 (285)
T ss_pred chhhHHHHHHc------------Ccch-hheeecCCCCcceeeHHhccHHHHHHhccCCEEEecCcccc-ccccccCCC-
Confidence 99999999987 8887 67999999999999999999999999999999999999999 877666654
Q ss_pred ccccccccCCHHHHHHhCCCccCEEEEec
Q 023484 249 DSLKIGMVKHPEVAQFLGGRLYDCVFKYN 277 (281)
Q Consensus 249 ~~~~l~~~KC~~va~~lg~~~~~~v~~~~ 277 (281)
|+++|++|||++||+.+||++|+.|++.+
T Consensus 257 piffLL~AKC~~VAr~lgV~~G~~V~~~~ 285 (285)
T COG1578 257 PIFFLLKAKCDPVARELGVPRGANVAKRN 285 (285)
T ss_pred cEEeeecccCchHHHHhCCCCCCeeeecC
Confidence 77789999999999999999999999863
No 2
>PLN02902 pantothenate kinase
Probab=100.00 E-value=5.7e-55 Score=440.43 Aligned_cols=277 Identities=43% Similarity=0.731 Sum_probs=246.2
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhc
Q 023484 2 KKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDL 81 (281)
Q Consensus 2 ~~~~~~~~~~pec~l~~~~~~~~~~~~g~~DPf~~~K~~~n~~al~~~~~l~~~l~~~~~~~~~~~~~lr~al~GN~~Dl 81 (281)
+++|++ .+||-|+...++.+.+++.+|..|||+++|+++|+.|+++++.+.+.++.+. +.++|.+++|++++||+|||
T Consensus 569 ~~~p~a-~G~~~~~~Ll~~rE~~Lre~Gf~DPY~~vK~~eN~~AL~llp~l~~~ld~~~-~edrL~~aVk~aiAGNifD~ 646 (876)
T PLN02902 569 MEEPAA-YGKLGLANLLELREECLREFHFVDAYRSIKQRENEASLAVLPDLLAELDSMT-EETRLLTLIEGVLAANIFDW 646 (876)
T ss_pred HhCccc-cCCchHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhhhhh
Confidence 678999 5555789999999999999999999999999999999999999999987665 45899999999999999999
Q ss_pred cchhhhhhhccc-CCCHHHHhhhhCCCCCCcCcHHHHHHHhcc------CCCCeEEEEecCCchhhhhchHHHHHHHHhC
Q 023484 82 GSAQLAEVFSKD-GMSFLASCQNLVPRPWVIDDLETFKVKWSK------KAWKKAVIFVDNSGADIILGILPFARELLRR 154 (281)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~------~~~~~v~~l~DNaGeeiv~Dll~L~~~L~~~ 154 (281)
|+....+..+.+ .+++.+.+++.++++|.+||+++|.+.|++ .++++++|++||||+|||||++||+++|+++
T Consensus 647 Ga~~~v~l~~~~~~~~~~~~~~~~~~rpw~iDD~d~f~erL~~~~~~~~~~~KkvLyf~DNAGaEIVLD~LpLiRELl~r 726 (876)
T PLN02902 647 GSRACVELYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGGKKPKPHKRALLFVDNSGADVVLGMLPLARELLRR 726 (876)
T ss_pred hhhhhhhhccccchhhHHHHHHHhhcCCCccCCHHHHHHHHhhcccccCCCccEEEEEecCCCCceecChHHHHHHHHHc
Confidence 987544332222 256788888888999999999999999974 3578999999999977999998899999999
Q ss_pred CCEEEEEecCCCccccCChHHHHHHHHHhhhhhhhh--------------ccccc--------cceeecccCCcccCcCc
Q 023484 155 GTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQL--------------MGVDT--------SKLLIANSGNDLPVIDL 212 (281)
Q Consensus 155 g~~V~~~vK~~P~vnDvT~~D~~~~L~~l~~~d~~l--------------~~l~~--------~~~~vi~~G~~~~g~~l 212 (281)
|.+|+++||+.|++||||++|+..+|+.++..++.+ .++++ .++.|++||+..||++|
T Consensus 727 gtkV~lavng~PiINDvT~eDl~~~~~~~a~~~~~l~~A~~aG~~~~~~~~~ld~~~~~~~~~~~l~VV~SG~~sPGidL 806 (876)
T PLN02902 727 GTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMVNTDDGSKDDSTSVPLMVVENGCGSPCIDL 806 (876)
T ss_pred CCEEEEEECCCCchhhhhHHHHHHHHHHHhhcccHHHHHHHhcccccccccccccccccccccceEEEEcCCCCCCCcCh
Confidence 999999999999999999999998888776543222 12342 36899999999999999
Q ss_pred ccccHHHHHHhccccEEEEecCCCCCccccccccccccccccccCCHHHHHHh-CCCccCEEEEeccCC
Q 023484 213 TAVSQELAYLASDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFL-GGRLYDCVFKYNEVS 280 (281)
Q Consensus 213 ~~~s~el~~~l~~ADLVI~KG~~Ny~~~~~~~~~~~~~~~l~~~KC~~va~~l-g~~~~~~v~~~~~~~ 280 (281)
+++|+||++++++|||||+||||..+|||++..|+|++|+|.|+|.+++|+.| |.++.|+||+++.++
T Consensus 807 ~rvS~E~~~a~~~ADLIIaKGMGRaihTN~~a~f~cd~LklamiK~~~lA~~L~gG~~ydcV~k~e~~~ 875 (876)
T PLN02902 807 RQVSSELAAAAKDADLIVLEGMGRALHTNFNARFKCEALKLAMVKNQRLAEKLINGNIYDCVCRYEPAS 875 (876)
T ss_pred HHCCHHHHHHhcCCCEEEEcCcccccccccccceecchhHHhHhccHHHHhhccCCceEEEEEecccCC
Confidence 99999999999999999999999999999999999999999999999999999 999999999999875
No 3
>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins. Those with structural information consist of two domains: an all-alpha domain with a 3-helical bundle fold, and an alpha-beta domain in 3 layers, alpha/beta/alpha. ; PDB: 2FFJ_B 1XFI_A 2Q40_A 2G8L_B 3PT1_A.
Probab=100.00 E-value=1.1e-55 Score=418.20 Aligned_cols=254 Identities=28% Similarity=0.332 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHH--HHcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhccchhhhhhh
Q 023484 13 DCILLCRLREQVL--RELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVF 90 (281)
Q Consensus 13 ec~l~~~~~~~~~--~~~g~~DPf~~~K~~~n~~al~~~~~l~~~l~~~~~~~~~~~~~lr~al~GN~~Dl~~~~~~~~~ 90 (281)
|||+|+++++++. ..++.+|||+++|+++|+.|++.++.+.+.+.+.++..+.|.+++++|+|||.+|+|++...+..
T Consensus 73 e~ylyr~i~~~~~~~~~~~~~DPf~~~K~~~~~~al~~~~~l~~~l~~~~~~~~~~~~~l~~al~GN~~Dls~~~~~~~~ 152 (355)
T PF01937_consen 73 ECYLYRRILEIFGYSSYLKNYDPFAEQKQESNEIALKLIPELAERLESLPDPRERFREALKLALWGNIIDLSLSPGHEVG 152 (355)
T ss_dssp HHHHHHHHHHHHTHSTTTTTS-TTHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHCG--CCCHTSHHCH
T ss_pred HHHHHHHHHHhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCcccCccccchhc
Confidence 7888888888877 56779999999999999999999999999998777656779999999999999999998832211
Q ss_pred cccCCCHHHHhhhhCCCCCCcCcHHHHHHHhccCCCCeEEEEecCCchhhhhchHHHHHHHHh--CCCEEEEEecCCC-c
Q 023484 91 SKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR--RGTQVILAANDLP-S 167 (281)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~~~v~~l~DNaGeeiv~Dll~L~~~L~~--~g~~V~~~vK~~P-~ 167 (281)
+.+....+.+..+++|++||++++|+.|...++++|+||+||||.|+|+|++ ||++|++ +|.+|++|||++| |
T Consensus 153 ---~~~~~~~~~~~~~~~~l~dd~~~~~~~l~~~~~~~v~~v~DNaG~Elv~D~l-l~~~L~~~~~~~~V~~~vK~~P~~ 228 (355)
T PF01937_consen 153 ---EFDQEEEIEKALEKPILVDDSDEFWEKLENKKAKRVDIVLDNAGFELVFDLL-LAEFLLESGPGSKVVFHVKGIPWF 228 (355)
T ss_dssp ---HHHHHHHHHHHHHSTESEE-HHHHHHHHCTCHTSEEEEE--BTTHHHHHHHH-HHHHHHHTCTTSEEEEEEBSS--T
T ss_pred ---ccchHHHHHHhhhcCCccccHHHHHHHhhccCCCEEEEEEcCCCcHHHhhHH-HHHHHHHhCCCCeEEEEECCCCCe
Confidence 1334555555667899999999999999443468999999999966999998 9999999 6899999999999 9
Q ss_pred cccCChHHHHHHHHHhhhhh-hh----hccccc--cceeecccCCc--ccCcCcccccHHHHHHhccccEEEEecCCCCC
Q 023484 168 INDVTYPELIEIMSKLKDEK-GQ----LMGVDT--SKLLIANSGND--LPVIDLTAVSQELAYLASDADLVILEGMGRGI 238 (281)
Q Consensus 168 vnDvT~~D~~~~L~~l~~~d-~~----l~~l~~--~~~~vi~~G~~--~~g~~l~~~s~el~~~l~~ADLVI~KG~~Ny~ 238 (281)
+||||++|+.|+|++|..++ .. ..++++ ...+++.+|.. ++|++++++|++|++.|++|||||+||||||
T Consensus 229 vnDvT~~D~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~fw~~~~~~~~~~~el~~~l~~adLVI~KG~~Ny- 307 (355)
T PF01937_consen 229 VNDVTMEDAEWLLERLADSDDFSLSALGKGLDKYLESGRVIVSGDDFWTPGLDLWEMSPELYEELSEADLVIFKGDLNY- 307 (355)
T ss_dssp TTB-BHHHHHHHHHHHH-TTTCHHHHHHTTHHHHHHTSEEEEESSCGGSSS--CCGSHHHHHHHHCC-SEEEEEHHHHH-
T ss_pred eccCcHHHHHHHHHHHHhcccccccccccchhhccccCeEEecCCCccCCCCChHHcCHHHHHHHhhCCEEEEeCCHHH-
Confidence 99999999999999999753 22 223333 12356666665 9999999999999999999999999999999
Q ss_pred cc---cccc-----------ccccccccccccCCHHHHHHhCCCccCE
Q 023484 239 ET---NLYA-----------QFKCDSLKIGMVKHPEVAQFLGGRLYDC 272 (281)
Q Consensus 239 ~~---~~~~-----------~~~~~~~~l~~~KC~~va~~lg~~~~~~ 272 (281)
++ .... .++||+++|+++||++||+.+ +++|+.
T Consensus 308 r~L~~d~~~~~t~~f~~~~~~~p~~i~~L~~~Kc~~va~~~-~~~~d~ 354 (355)
T PF01937_consen 308 RKLLGDRNWPPTTPFKTALGFFPAPILFLRTVKCDVVAGLL-VGQGDK 354 (355)
T ss_dssp HHHTTSCTTTTTSEHHHHTGTSS--EEEEEE--SHHHHHHH-STTTHC
T ss_pred hhhhcCcCCCCCCCccccchhHHHHHHHhHhhCCHHHhCCC-ccCcCC
Confidence 33 1111 346779999999999999999 988874
No 4
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=1.4e-47 Score=345.04 Aligned_cols=273 Identities=61% Similarity=0.971 Sum_probs=258.1
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhc
Q 023484 2 KKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDL 81 (281)
Q Consensus 2 ~~~~~~~~~~pec~l~~~~~~~~~~~~g~~DPf~~~K~~~n~~al~~~~~l~~~l~~~~~~~~~~~~~lr~al~GN~~Dl 81 (281)
|++|+++|+||-|....++.+.+++.+|..|||.++|+++|..|++.+|.+.+.++++++++.++..++|..++||++|+
T Consensus 74 k~~P~a~G~~~~g~~Ll~lRE~~LrE~gF~Diy~kvK~~ENa~Aia~fP~vv~~lDal~dE~~Rle~LvrGilAGNiFDw 153 (348)
T KOG4584|consen 74 KKDPEAYGGPPLGINLLRLREQILRELGFRDIYKKVKDEENAKAIALFPQVVRLLDALEDEGTRLENLVRGILAGNIFDW 153 (348)
T ss_pred HhChHhcCCCcchHHHHHHHHHHHHHhCCccHHHHHHHhhhhhHHHHhHHHHHHHhhhcchhHHHHHHHHHHHhcchhhh
Confidence 78999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred cchhhhhhhccc-CCCHHHHhhhhCCCCCCcCcHHHHHHHhccCCCCeEEEEecCCchhhhhchHHHHHHHHhCCCEEEE
Q 023484 82 GSAQLAEVFSKD-GMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVIL 160 (281)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~ 160 (281)
|+.....+.+.+ .+++..+++++.++||++|+++.|.+.|.+.++|+++++.||+|.++++.++||+++|+++|++|++
T Consensus 154 Ga~~~~~il~~~~~f~f~~a~~~l~~RPWl~D~ld~f~~r~~~~p~K~~lif~DNSG~DvILGilPf~Rellr~gt~vil 233 (348)
T KOG4584|consen 154 GAKAVVKILESASVFGFLAALQNLESRPWLVDDLDSFLARLKGKPHKCALIFVDNSGFDVILGILPFARELLRRGTEVIL 233 (348)
T ss_pred HHHHHHHHHhccccchHHHHHhhhhcCCeeeccHHHHHHHhcCCCcceEEEEecCCCcceeeeecHHHHHHHhCCCeEEE
Confidence 998765555443 3788999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EecCCCccccCChHHHHHHHHHhhhh-hhhhccccccceeecccCCcccCcCcccccHHHHHHhccccEEEEecCCCCCc
Q 023484 161 AANDLPSINDVTYPELIEIMSKLKDE-KGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIE 239 (281)
Q Consensus 161 ~vK~~P~vnDvT~~D~~~~L~~l~~~-d~~l~~l~~~~~~vi~~G~~~~g~~l~~~s~el~~~l~~ADLVI~KG~~Ny~~ 239 (281)
+..+.|.+||||..++..++..++.+ ....++++.+.+.+..+|...|+++|+++|.|+...-++|||||..|||..+|
T Consensus 234 ~ans~palNdvt~~el~~l~~~~~~~~~~l~~~~~~~~ll~~~~G~~~pciDlrrvsqeLa~l~~daDLVViEGMGRalh 313 (348)
T KOG4584|consen 234 CANSSPALNDVTYSELKELAAELANDCNVLLKAIDTGQLLVVQNGQDSPCIDLRRVSQELAYLSSDADLVVIEGMGRALH 313 (348)
T ss_pred EecCcchhccccHHHHHHHHHhhccCChHHHHHhhhcceEEeecCCCCceeeHHhhhHHHHHHhcCCCEEEEeccchhhh
Confidence 99999999999999999999999975 44566788888999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccCCHHHHHHhCCCccCEEE
Q 023484 240 TNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVF 274 (281)
Q Consensus 240 ~~~~~~~~~~~~~l~~~KC~~va~~lg~~~~~~v~ 274 (281)
||.+..|+|.+|++.++|..++|++||.+++++||
T Consensus 314 TN~~aqf~CeSLK~avik~~wlA~~LGgrlf~vVf 348 (348)
T KOG4584|consen 314 TNLNAQFKCESLKLAVIKNLWLAERLGGRLFSVVF 348 (348)
T ss_pred hhhhhhhcccHhHHHHHhhHHHHHHhCCchheecC
Confidence 99999999999999999999999999999999986
No 5
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.5e-48 Score=358.79 Aligned_cols=248 Identities=19% Similarity=0.236 Sum_probs=212.4
Q ss_pred hHHHHHHHHHHHHHH--HcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH----HHHHHHHHHHhhhhhhccchh
Q 023484 12 PDCILLCRLREQVLR--ELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGK----RVESLIRGIFAGNIFDLGSAQ 85 (281)
Q Consensus 12 pec~l~~~~~~~~~~--~~g~~DPf~~~K~~~n~~al~~~~~l~~~l~~~~~~~~----~~~~~lr~al~GN~~Dl~~~~ 85 (281)
.||||||||+.+|.+ .+..+|||.++|++.+..+...+.++..+.+.++.+.+ .|.+++|+++|||.+|+|+.+
T Consensus 118 aECYlYRrI~s~F~~s~~l~~yD~F~~~K~~~~~~s~~~i~ela~~~~~l~~~~~~~~~~F~~llkisLWGN~~Dlsl~~ 197 (434)
T KOG3870|consen 118 AECYLYRRISSIFQRSSELKKYDYFFDQKESTLTSSLPAIEELAKRTRGLERSLESIHEVFVELLKISLWGNATDLSLNG 197 (434)
T ss_pred hhHHHHHHHHHHHHhhhhhhhcChHHHHhHHHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcccccccccc
Confidence 699999999999995 68999999999999999999999999999888777666 899999999999999999966
Q ss_pred hhhhhcccCCCHHHHhhhhCCCCCCcCcHHHHHHHhccC---CCCeEEEEecCCchhhhhchHHHHHHHHhCC--CEEEE
Q 023484 86 LAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKK---AWKKAVIFVDNSGADIILGILPFARELLRRG--TQVIL 160 (281)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~---~~~~v~~l~DNaGeeiv~Dll~L~~~L~~~g--~~V~~ 160 (281)
+.+..+ +....++++++ ++.+++||++.+|+.|.+. ++++|+||+||||+|++.|++ ||+||++.| .+|+|
T Consensus 198 ~~~~~~--~~q~~~~va~~-~~~iLvnd~~~vW~~L~~~k~s~~~rVDfVlDNaGfEL~~DLi-lAeyli~~glA~kV~f 273 (434)
T KOG3870|consen 198 GTESKQ--NIQVLKAVADL-DEFILVNDTEDVWSKLSNAKHSRNGRVDFVLDNAGFELFTDLI-LAEYLISSGLATKVRF 273 (434)
T ss_pred cccccc--hhHHHHHHHhh-ccceeecChHHHHHHhhcchhcCCceEEEEEeCCccchhHHHH-HHHHHHhccccceEEE
Confidence 543322 23455666664 7789999999999999875 557999999999999999998 999999998 89999
Q ss_pred EecCCC-ccccCChHHHHHHHHHhhhh-hhhhccccccceeecccC-----------CcccCcCcccccHHHHHHhcccc
Q 023484 161 AANDLP-SINDVTYPELIEIMSKLKDE-KGQLMGVDTSKLLIANSG-----------NDLPVIDLTAVSQELAYLASDAD 227 (281)
Q Consensus 161 ~vK~~P-~vnDvT~~D~~~~L~~l~~~-d~~l~~l~~~~~~vi~~G-----------~~~~g~~l~~~s~el~~~l~~AD 227 (281)
|||..| ||||||.+|+.|+|++|..+ ++.++.+++.+...+.+| +++++..|+++.|+++..+++|+
T Consensus 274 H~KaiPWFVSDvt~~Df~wll~~L~~~~~~~ls~~g~k~~~~~~~Gk~vl~~~~FWTsph~y~~M~~~~p~Ly~~L~~S~ 353 (434)
T KOG3870|consen 274 HVKAIPWFVSDVTEKDFDWLLEFLRDHEDEELSAFGKKLEKFIKEGKIVLRPHYFWTSPHDYYRMPQVAPDLYDDLQKSS 353 (434)
T ss_pred cccCCceeeecccccchHHHHHHHhccCcHHHHHHHHHHHHHHhcCcEEEccCccccCcchhhcccccchHHHHHHhhCc
Confidence 999999 89999999999999999974 666777776677777777 35778999999999999999999
Q ss_pred EEEEecCCCC--C-------cccccc-----ccccccccccccCCHHHHH
Q 023484 228 LVILEGMGRG--I-------ETNLYA-----QFKCDSLKIGMVKHPEVAQ 263 (281)
Q Consensus 228 LVI~KG~~Ny--~-------~~~~~~-----~~~~~~~~l~~~KC~~va~ 263 (281)
||||||++|| | .|--|- ..+|++.-|+++||++|+.
T Consensus 354 LvIFKGDLNYRKL~GD~~W~~Tt~F~t~Lrgf~p~n~caLRTiKadvv~G 403 (434)
T KOG3870|consen 354 LVIFKGDLNYRKLTGDRKWDPTTPFSTALRGFAPSNICALRTIKADVVVG 403 (434)
T ss_pred EEEEeccccHHHHhccCCCCCCCcHHHHhCCCCCCccceeeeeeeeeeec
Confidence 9999999999 1 111111 1277888899999999863
No 6
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=54.90 E-value=1e+02 Score=28.14 Aligned_cols=106 Identities=9% Similarity=0.034 Sum_probs=66.2
Q ss_pred CcHHHHHHHhccCCCC-eEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHHhhhhhhhh
Q 023484 112 DDLETFKVKWSKKAWK-KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQL 190 (281)
Q Consensus 112 dd~~~~~~~L~~~~~~-~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P~vnDvT~~D~~~~L~~l~~~d~~l 190 (281)
+.+.++.+.|++.+.+ ++.+++.++.. .-+ +++.+.+.|++|-.|.-+.+.+++.|.+++..-|++....=..+
T Consensus 28 ~nt~riL~lL~~~gikATFFv~g~~~e~--~p~---lir~i~~~GhEIgsHg~sH~~l~~ls~ee~~~eI~~s~~~Le~i 102 (265)
T TIGR03006 28 RNTDRILDLLDRHGVKATFFTLGWVAER--YPE---LVRRIVAAGHELASHGYGHERVTTQTPEAFRADIRRSKALLEDL 102 (265)
T ss_pred HhHHHHHHHHHHcCCcEEEEEeccchhh--CHH---HHHHHHHcCCEeeeccccCcCchhCCHHHHHHHHHHHHHHHHHH
Confidence 4567777788764333 66666655543 223 45899999999999999999888999888776555444311111
Q ss_pred ccccccceeecccCCcccCcCcccccHHHHHHhccccEE
Q 023484 191 MGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLV 229 (281)
Q Consensus 191 ~~l~~~~~~vi~~G~~~~g~~l~~~s~el~~~l~~ADLV 229 (281)
.| . -..|...|+.....-++...+.+.++...
T Consensus 103 tG--~-----~~~gfRaP~~s~~~~t~~a~~iL~e~Gy~ 134 (265)
T TIGR03006 103 SG--Q-----PVRGYRAPSFSIGKKNLWALDVLAEAGYR 134 (265)
T ss_pred hC--C-----CceEEECCCCCCCCCcHHHHHHHHHCCCE
Confidence 11 1 12355667766666665555666555433
No 7
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=45.49 E-value=13 Score=28.00 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=19.3
Q ss_pred ccCCHHHHHHhCCCccCEEEEec
Q 023484 255 MVKHPEVAQFLGGRLYDCVFKYN 277 (281)
Q Consensus 255 ~~KC~~va~~lg~~~~~~v~~~~ 277 (281)
+-+.+|+|+++|.+.||+|=.-.
T Consensus 40 I~~~DPv~r~~g~k~GdVvkI~R 62 (79)
T PRK09570 40 IKASDPVVKAIGAKPGDVIKIVR 62 (79)
T ss_pred eeccChhhhhcCCCCCCEEEEEE
Confidence 45889999999999999886643
No 8
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=45.04 E-value=1.2e+02 Score=25.77 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=26.3
Q ss_pred CCeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecC
Q 023484 126 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 164 (281)
Q Consensus 126 ~~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~ 164 (281)
.++|++|+ +|+ ++ -.. ++++|.+.|.+|++.-|.
T Consensus 44 gk~vlViG--~G~-~~-G~~-~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVG--RSN-IV-GKP-LAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEEC--CcH-HH-HHH-HHHHHhhCCCEEEEEECC
Confidence 47999996 477 43 553 789999999888888875
No 9
>KOG3218 consensus RNA polymerase, 25-kDa subunit (common to polymerases I, II and III) [Transcription]
Probab=44.63 E-value=12 Score=32.99 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=18.4
Q ss_pred ccCCHHHHHHhCCCccCEEEE
Q 023484 255 MVKHPEVAQFLGGRLYDCVFK 275 (281)
Q Consensus 255 ~~KC~~va~~lg~~~~~~v~~ 275 (281)
.-|++|||+++|.+.|++|=.
T Consensus 171 Iq~~DpvaRYyGLKrGqVVKI 191 (208)
T KOG3218|consen 171 IQKKDPVARYYGLKRGQVVKI 191 (208)
T ss_pred eeccChHHhhhccccCcEEEE
Confidence 359999999999999998854
No 10
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=43.68 E-value=15 Score=27.26 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=16.7
Q ss_pred ccCCHHHHHHhCCCccCEEEEe
Q 023484 255 MVKHPEVAQFLGGRLYDCVFKY 276 (281)
Q Consensus 255 ~~KC~~va~~lg~~~~~~v~~~ 276 (281)
+.+.+|+|+++|.+.||+|=.-
T Consensus 37 I~~~DPv~r~~g~k~GdVvkI~ 58 (74)
T PF01191_consen 37 ILSSDPVARYLGAKPGDVVKII 58 (74)
T ss_dssp EETTSHHHHHTT--TTSEEEEE
T ss_pred ccccChhhhhcCCCCCCEEEEE
Confidence 4578999999999999988553
No 11
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=39.89 E-value=19 Score=27.01 Aligned_cols=19 Identities=32% Similarity=0.237 Sum_probs=16.1
Q ss_pred CCHHHHHHhCCCccCEEEE
Q 023484 257 KHPEVAQFLGGRLYDCVFK 275 (281)
Q Consensus 257 KC~~va~~lg~~~~~~v~~ 275 (281)
..+|||+.+|.+.||.|=.
T Consensus 45 ~~DPva~~lgak~GdvVkI 63 (80)
T COG2012 45 ASDPVAKALGAKPGDVVKI 63 (80)
T ss_pred ccChhHHHccCCCCcEEEE
Confidence 5789999999999996644
No 12
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=38.03 E-value=41 Score=27.12 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHH
Q 023484 16 LLCRLREQVLRELGFRDIFKKVKDEEN 42 (281)
Q Consensus 16 l~~~~~~~~~~~~g~~DPf~~~K~~~n 42 (281)
...+--+.+.+..|..|||...|+..-
T Consensus 54 VlaEpIQTvmRr~g~~~pYE~LK~lTR 80 (115)
T PF08328_consen 54 VLAEPIQTVMRRYGIPNPYEKLKELTR 80 (115)
T ss_dssp GGHHHHHHHHHHTT-SSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHc
Confidence 566677888899999999999998653
No 13
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=34.46 E-value=23 Score=29.70 Aligned_cols=29 Identities=38% Similarity=0.399 Sum_probs=19.5
Q ss_pred CcCcccccHHHHHH-hccccEEEEecCCCC
Q 023484 209 VIDLTAVSQELAYL-ASDADLVILEGMGRG 237 (281)
Q Consensus 209 g~~l~~~s~el~~~-l~~ADLVI~KG~~Ny 237 (281)
-+.|+.++..+... ..+|||||++|-+--
T Consensus 75 lTrmPA~~K~LmavD~~dADlvIARGRLGv 104 (154)
T PF11576_consen 75 LTRMPALSKALMAVDISDADLVIARGRLGV 104 (154)
T ss_dssp GSSSHHHHHHHHHHHHH--SEEEEEEE-SS
T ss_pred cccCcHHHhHHHheeccCCcEEEEcccccC
Confidence 45666667777665 479999999999885
No 14
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=33.75 E-value=3.7e+02 Score=24.49 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=69.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhc-cchhhhhhhcccCCCHHHHhhhhCCCCC
Q 023484 31 RDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDL-GSAQLAEVFSKDGMSFLASCQNLVPRPW 109 (281)
Q Consensus 31 ~DPf~~~K~~~n~~al~~~~~l~~~l~~~~~~~~~~~~~lr~al~GN~~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (281)
.|+....-++........+....+.+ ..+.+.+++.+-.-...+.+ |......+ . .++...+..+-..-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~~t~~~l-----~~~~l~~av~~L~~A~rI~~~G~g~S~~v-A---~~~~~~l~~ig~~~~ 160 (281)
T COG1737 90 DDGPESILEKLLAANIAALERTLNLL-----DEEALERAVELLAKARRIYFFGLGSSGLV-A---SDLAYKLMRIGLNVV 160 (281)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHcCCeEEEEEechhHHH-H---HHHHHHHHHcCCcee
Confidence 34444455555555555554444433 22568888887777776665 43221111 1 233444444433446
Q ss_pred CcCcHHHHHHHhccCCCCeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecC
Q 023484 110 VIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 164 (281)
Q Consensus 110 ~~dd~~~~~~~L~~~~~~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~ 164 (281)
.++|....+..+.....+.++++...+|+ - -+++-.++...++|.+|+..--.
T Consensus 161 ~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~-t-~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 161 ALSDTHGQLMQLALLTPGDVVIAISFSGY-T-REIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred EecchHHHHHHHHhCCCCCEEEEEeCCCC-c-HHHHHHHHHHHHCCCcEEEEcCC
Confidence 66777766655544445789999999999 3 24444566777788777665443
No 15
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=32.77 E-value=58 Score=27.52 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=24.7
Q ss_pred eEEEEecCCchhhhhchHHHHHHHHhCCCEEEEE
Q 023484 128 KAVIFVDNSGADIILGILPFARELLRRGTQVILA 161 (281)
Q Consensus 128 ~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~ 161 (281)
+|.+-+|++|.++ -.. ++++|.+.|++|+=.
T Consensus 2 kIaig~Dhag~~l--K~~-I~~~Lk~~g~~v~D~ 32 (151)
T COG0698 2 KIAIGSDHAGYEL--KEI-IIDHLKSKGYEVIDF 32 (151)
T ss_pred cEEEEcCcccHHH--HHH-HHHHHHHCCCEEEec
Confidence 5788899999976 344 689999999887753
No 16
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=31.69 E-value=3.8e+02 Score=23.98 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhhhhhc-cchhhhhhhcccCCCHHHHhhhhCCCCCCcCcHHHHHHHhccCCCCeEEEEecCCchhhhh
Q 023484 64 KRVESLIRGIFAGNIFDL-GSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIIL 142 (281)
Q Consensus 64 ~~~~~~lr~al~GN~~Dl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~~~v~~l~DNaGeeiv~ 142 (281)
+.+..++++-.-.+.+.+ |.... .... ..+...+..+-..-...+|.......+...+.+.++++...+|+ --
T Consensus 116 ~~l~~~~~~i~~a~~I~i~G~G~s-~~~A---~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~-~~- 189 (278)
T PRK11557 116 EKLHECVTMLRSARRIILTGIGAS-GLVA---QNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGE-RR- 189 (278)
T ss_pred HHHHHHHHHHhcCCeEEEEecChh-HHHH---HHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCC-CH-
Confidence 456666666555555554 33321 1110 12223333221111233555555554443334679999999998 32
Q ss_pred chHHHHHHHHhCCCEEEEEecC
Q 023484 143 GILPFARELLRRGTQVILAAND 164 (281)
Q Consensus 143 Dll~L~~~L~~~g~~V~~~vK~ 164 (281)
++.-.++...++|.+|+.....
T Consensus 190 ~~~~~~~~ak~~ga~iI~IT~~ 211 (278)
T PRK11557 190 ELNLAADEALRVGAKVLAITGF 211 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEcCC
Confidence 2222467778888888777653
No 17
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=29.30 E-value=71 Score=30.20 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=36.0
Q ss_pred CCCcCcHHHHHHHhcc---CCCCeEEEEecCCchhhhhchHHHHHHHHh----CCCEEEE
Q 023484 108 PWVIDDLETFKVKWSK---KAWKKAVIFVDNSGADIILGILPFARELLR----RGTQVIL 160 (281)
Q Consensus 108 ~~~~dd~~~~~~~L~~---~~~~~v~~l~DNaGeeiv~Dll~L~~~L~~----~g~~V~~ 160 (281)
.|.+|.+.++|+.+.+ ..+++++|.+||-|+.=.-=.+ +...|.+ .|..|++
T Consensus 161 ~Fav~~i~~WW~~~g~~~yp~a~~lli~~D~GgsN~~r~r~-wk~~L~~la~~~gl~I~v 219 (311)
T PF07592_consen 161 DFAVDSIRRWWEEMGKARYPHAKRLLITADNGGSNGSRRRL-WKKRLQELADETGLSIRV 219 (311)
T ss_pred HHHHHHHHHHHHHhChhhcCchheEEEeccCCCCccchhHH-HHHHHHHHHHHhCCEEEE
Confidence 4788889999999843 2357999999999995544444 5666654 3654443
No 18
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=28.49 E-value=92 Score=29.33 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.1
Q ss_pred ccccHHHHHHhccccEEEEecCCCC
Q 023484 213 TAVSQELAYLASDADLVILEGMGRG 237 (281)
Q Consensus 213 ~~~s~el~~~l~~ADLVI~KG~~Ny 237 (281)
...+++..+++.+||+||+ |.||.
T Consensus 163 ~~~~~~a~~AI~~AD~Iv~-gPGSl 186 (308)
T cd07187 163 PKANPEALEAIEEADLIVY-GPGSL 186 (308)
T ss_pred CCCCHHHHHHHHhCCEEEE-CCCcc
Confidence 5788999999999998665 99997
No 19
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=27.57 E-value=1.3e+02 Score=23.75 Aligned_cols=33 Identities=15% Similarity=0.407 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Q 023484 16 LLCRLREQVLRELGFRDIFKKVKDEENAKAISLF 49 (281)
Q Consensus 16 l~~~~~~~~~~~~g~~DPf~~~K~~~n~~al~~~ 49 (281)
+|+.+|+.+++++|. .=|..+|+..+..|++++
T Consensus 70 ~f~~i~~~lk~~F~V-~sY~~I~~kdfd~A~~~I 102 (116)
T PF10552_consen 70 LFSDIYRDLKRHFGV-PSYKDIPRKDFDEALEFI 102 (116)
T ss_pred HHHHHHHHHHHHhCC-chHHhhhHHHHHHHHHHH
Confidence 455555555555554 345555555555555554
No 20
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=27.52 E-value=1.7e+02 Score=25.92 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCeEEEEe---cCCchhhhhchHHHHHHHHhCCCEEEEEecCCC--ccccCChH
Q 023484 126 WKKAVIFV---DNSGADIILGILPFARELLRRGTQVILAANDLP--SINDVTYP 174 (281)
Q Consensus 126 ~~~v~~l~---DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P--~vnDvT~~ 174 (281)
.++|+++| +|-|- -++ .|++|...|..|+++..+.| .-++.-..
T Consensus 49 ~~~v~vlcG~GnNGGD----G~V-aAR~L~~~G~~V~v~~~~~~~~~~~~~a~~ 97 (203)
T COG0062 49 ARRVLVLCGPGNNGGD----GLV-AARHLKAAGYAVTVLLLGDPKKLKTEAARA 97 (203)
T ss_pred CCEEEEEECCCCccHH----HHH-HHHHHHhCCCceEEEEeCCCCCccHHHHHH
Confidence 46799998 77776 555 89999999987777776655 34444333
No 21
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=26.66 E-value=98 Score=26.48 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=19.3
Q ss_pred cccHHHHHHhccccEEEEecCCC
Q 023484 214 AVSQELAYLASDADLVILEGMGR 236 (281)
Q Consensus 214 ~~s~el~~~l~~ADLVI~KG~~N 236 (281)
+-+|++.+..++|||||+-+-+-
T Consensus 69 ~f~psl~e~I~~AdlVIsHAGaG 91 (170)
T KOG3349|consen 69 DFSPSLTEDIRSADLVISHAGAG 91 (170)
T ss_pred ecCccHHHHHhhccEEEecCCcc
Confidence 46788999999999999987654
No 22
>PLN03111 DNA-directed RNA polymerase II subunit family protein; Provisional
Probab=26.02 E-value=40 Score=29.93 Aligned_cols=23 Identities=13% Similarity=0.106 Sum_probs=19.4
Q ss_pred ccCCHHHHHHhCCCccCEEEEec
Q 023484 255 MVKHPEVAQFLGGRLYDCVFKYN 277 (281)
Q Consensus 255 ~~KC~~va~~lg~~~~~~v~~~~ 277 (281)
+.+.+|||+++|.++|++|=...
T Consensus 169 I~~~DPvary~g~k~G~vvkI~R 191 (206)
T PLN03111 169 IQVSDPIARYYGLKRGQVVKIIR 191 (206)
T ss_pred ccccChhhHhcCCCCCCEEEEEE
Confidence 45889999999999999886643
No 23
>PHA00687 hypothetical protein
Probab=25.86 E-value=1.2e+02 Score=20.42 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=28.6
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 023484 3 KDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEE 41 (281)
Q Consensus 3 ~~~~~~~~~pec~l~~~~~~~~~~~~g~~DPf~~~K~~~ 41 (281)
.||+-+--||| -.+-+.+....-..-.||.+..|.-+
T Consensus 4 rqpvqttlppe--amrllqqaaqtpitradplarvkaie 40 (56)
T PHA00687 4 RQPVQTTLPPE--AMRLLQQAAQTPITRADPLARVKAIE 40 (56)
T ss_pred cCcccccCCHH--HHHHHHHHhcCCccccChHHHHHHHH
Confidence 58999999999 66666666666677789999988643
No 24
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=25.64 E-value=1.3e+02 Score=28.40 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=34.7
Q ss_pred CeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecCCCc
Q 023484 127 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPS 167 (281)
Q Consensus 127 ~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P~ 167 (281)
++|++.+-=.|.+++--+. ++++|.+.|++|.|+.....+
T Consensus 2 ~~i~~~~GGTGGHi~Pala-~a~~l~~~g~~v~~vg~~~~~ 41 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLA-IIPYLKEDNWDISYIGSHQGI 41 (352)
T ss_pred CeEEEEcCCcHHHHHHHHH-HHHHHHhCCCEEEEEECCCcc
Confidence 4788888889999999998 999999999999999866654
No 25
>PTZ00061 DNA-directed RNA polymerase; Provisional
Probab=25.55 E-value=41 Score=29.85 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=18.8
Q ss_pred ccCCHHHHHHhCCCccCEEEEe
Q 023484 255 MVKHPEVAQFLGGRLYDCVFKY 276 (281)
Q Consensus 255 ~~KC~~va~~lg~~~~~~v~~~ 276 (281)
+-+.+|||+++|.++||+|=.-
T Consensus 168 I~~~DPvary~g~k~G~vvkI~ 189 (205)
T PTZ00061 168 IQSADPVARYFGLSKGQVVKII 189 (205)
T ss_pred ccccChhhHhcCCCCCCEEEEE
Confidence 4588999999999999988653
No 26
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=25.37 E-value=2.2e+02 Score=21.55 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=58.4
Q ss_pred CcHHHHHHHhccCCC-CeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecCCCccccCChHHHHHHHHHhhhh-hhh
Q 023484 112 DDLETFKVKWSKKAW-KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDE-KGQ 189 (281)
Q Consensus 112 dd~~~~~~~L~~~~~-~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P~vnDvT~~D~~~~L~~l~~~-d~~ 189 (281)
+...++++.|.+.+. .++.+++.+.+. .. ..++.+.+.|++|-.|.-..|.....+.+++..-|.+.... ...
T Consensus 18 ~~~~~~~~~l~~~~i~at~fv~~~~~~~----~~-~~l~~l~~~G~ei~~H~~~H~~~~~~~~~~~~~ei~~~~~~l~~~ 92 (123)
T PF01522_consen 18 DNYDRLLPLLKKYGIPATFFVIGSWVER----YP-DQLRELAAAGHEIGNHGWSHPNLSTLSPEELRREIERSREILEEI 92 (123)
T ss_dssp THHHHHHHHHHHTT--EEEEE-HHHHHH----HH-HHHHHHHHTT-EEEEE-SSSSCGGGS-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccceeeeeccccccc----cc-ccchhHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHHHHHHH
Confidence 345666777765322 377777776555 12 25589999999999999999999999999888765554431 111
Q ss_pred hccccccceeecccCCcccCcCcccccHHHHHHhcccc
Q 023484 190 LMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDAD 227 (281)
Q Consensus 190 l~~l~~~~~~vi~~G~~~~g~~l~~~s~el~~~l~~AD 227 (281)
++. -..+...|+. ..++...+.+.++-
T Consensus 93 ---~g~-----~~~~f~~P~g---~~~~~~~~~l~~~G 119 (123)
T PF01522_consen 93 ---TGR-----PPKGFRYPFG---SYDDNTLQALREAG 119 (123)
T ss_dssp ---HSS-----EESEEE-GGG---EECHHHHHHHHHTT
T ss_pred ---hCC-----CCcEEECCCC---CCCHHHHHHHHHcC
Confidence 111 1122233333 46777777766554
No 27
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=24.97 E-value=26 Score=30.46 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=42.6
Q ss_pred EEEEEecCCCccccCChHHHHHHHHHhhhhhhhhccccccceeecccCCcccCcCcccccHHHHHHhc--cccEEEEecC
Q 023484 157 QVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLAS--DADLVILEGM 234 (281)
Q Consensus 157 ~V~~~vK~~P~vnDvT~~D~~~~L~~l~~~d~~l~~l~~~~~~vi~~G~~~~g~~l~~~s~el~~~l~--~ADLVI~KG~ 234 (281)
.+-=.|||.||+|=+...| |.. .+|+..|++.|.....+.....+ .|.|.++--|
T Consensus 64 St~e~vkG~Pf~nViS~sD----------------g~p-------~~gtG~pyFyLt~Ld~t~~n~qkd~~atL~~s~~q 120 (210)
T KOG3374|consen 64 STNERVKGYPFVNVISISD----------------GDP-------NNGTGRPYFYLTDLDFTGPNWQKDNKATLLFSDEQ 120 (210)
T ss_pred eecccccCCccceEEEccC----------------CCC-------cCCCCceEEEeccCCCCCcccccCCceeEEeeccc
Confidence 3444799999999888886 322 44555677777777777777764 5889999888
Q ss_pred CCC
Q 023484 235 GRG 237 (281)
Q Consensus 235 ~Ny 237 (281)
.|+
T Consensus 121 t~~ 123 (210)
T KOG3374|consen 121 TLR 123 (210)
T ss_pred cch
Confidence 886
No 28
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=24.31 E-value=2.7e+02 Score=19.79 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=26.8
Q ss_pred HHHHHHhCCCEEEEEecCCCccccCChHHHHH-HHHHhhh
Q 023484 147 FARELLRRGTQVILAANDLPSINDVTYPELIE-IMSKLKD 185 (281)
Q Consensus 147 L~~~L~~~g~~V~~~vK~~P~vnDvT~~D~~~-~L~~l~~ 185 (281)
+|..|.+.|.+|++..++..+. ...-+++.. +.+.+..
T Consensus 14 ~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~ 52 (80)
T PF00070_consen 14 LAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRK 52 (80)
T ss_dssp HHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHH
Confidence 5688999999999999998877 444455443 4444443
No 29
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.69 E-value=86 Score=25.91 Aligned_cols=16 Identities=44% Similarity=0.277 Sum_probs=13.7
Q ss_pred hccccEEEEecCCCCC
Q 023484 223 ASDADLVILEGMGRGI 238 (281)
Q Consensus 223 l~~ADLVI~KG~~Ny~ 238 (281)
.+.|||||++|.+.-.
T Consensus 91 is~ADlvIARGRLGvP 106 (156)
T COG4019 91 ISKADLVIARGRLGVP 106 (156)
T ss_pred ccCCcEEEeeccccCC
Confidence 3799999999998863
No 30
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=21.38 E-value=3.1e+02 Score=26.52 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=35.1
Q ss_pred CcHHHHHHHhccCCCCeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecCCCcc
Q 023484 112 DDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSI 168 (281)
Q Consensus 112 dd~~~~~~~L~~~~~~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P~v 168 (281)
++...+.+.+....++++++|+ +|. +-++ ++..|.+.|.+|++..++..+.
T Consensus 134 ~~~~~l~~~l~~~~~~~vvViG--gG~-ig~E---~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 134 EDTDAIDQFIKANQVDKALVVG--AGY-ISLE---VLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred HHHHHHHHHHhhcCCCEEEEEC--CCH-HHHH---HHHHHHhCCCcEEEEecccccc
Confidence 4455556555443357899998 676 5444 4578888899999999876543
No 31
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=21.20 E-value=41 Score=27.62 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=16.9
Q ss_pred HHHHHHhccccEEEEecCCC
Q 023484 217 QELAYLASDADLVILEGMGR 236 (281)
Q Consensus 217 ~el~~~l~~ADLVI~KG~~N 236 (281)
+++.+.+..|||||++|=++
T Consensus 64 ~~m~~~m~~aDlvIs~aG~~ 83 (167)
T PF04101_consen 64 DNMAELMAAADLVISHAGAG 83 (167)
T ss_dssp SSHHHHHHHHSEEEECS-CH
T ss_pred hhHHHHHHHcCEEEeCCCcc
Confidence 46889999999999999877
No 32
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=20.79 E-value=1.9e+02 Score=28.27 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=56.1
Q ss_pred eEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecCC--CccccCChHHHHHHHHHhhhhhhhhccccccceeecccCC
Q 023484 128 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL--PSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGN 205 (281)
Q Consensus 128 ~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~--P~vnDvT~~D~~~~L~~l~~~d~~l~~l~~~~~~vi~~G~ 205 (281)
--+.-..++++--.-|. +.=+..++...+.|.+. ++-.++..+|+..+ +-..+.-.+.+.|+
T Consensus 133 ~~l~EvG~tn~t~~~d~----~~AIne~ta~llkV~s~~~~f~~~l~~~~l~~i------------a~~~~lpvivD~aS 196 (395)
T COG1921 133 AKLVEVGTTNRTHLKDY----ELAINENTALLLKVHSSNYGFTGMLSEEELVEI------------AHEKGLPVIVDLAS 196 (395)
T ss_pred CEEEEecccCcCCHHHH----HHHhccCCeeEEEEeeccccccccccHHHHHHH------------HHHcCCCEEEecCC
Confidence 34455667777222333 22244567777777777 67899999998876 22233455666665
Q ss_pred cccCcCcccccHHHHHHhcc-ccEEEEecCCCC
Q 023484 206 DLPVIDLTAVSQELAYLASD-ADLVILEGMGRG 237 (281)
Q Consensus 206 ~~~g~~l~~~s~el~~~l~~-ADLVI~KG~~Ny 237 (281)
-. ..+ .-+.+++.+.. ||||++=|+-=.
T Consensus 197 g~-~v~---~e~~l~~~la~GaDLV~~SgdKll 225 (395)
T COG1921 197 GA-LVD---KEPDLREALALGADLVSFSGDKLL 225 (395)
T ss_pred cc-ccc---cccchhHHHhcCCCEEEEecchhc
Confidence 33 111 34677888875 999999998543
No 33
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.71 E-value=1.4e+02 Score=28.16 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=57.4
Q ss_pred cccccHHHHHHhccccEEEEecCCCC-CccccccccccccccccccCCHHHHHHhCCCccCEEEEecc
Q 023484 212 LTAVSQELAYLASDADLVILEGMGRG-IETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNE 278 (281)
Q Consensus 212 l~~~s~el~~~l~~ADLVI~KG~~Ny-~~~~~~~~~~~~~~~l~~~KC~~va~~lg~~~~~~v~~~~~ 278 (281)
..-+.+..++..+.|++||.=||--- +-.++.|+|..|++-+----|+-++..-..-.|++|+.+..
T Consensus 253 idHaaE~~~el~~~~~lvvTvGDDTT~vagdIl~RfgipiiGItDgD~D~~~~~~~~~~gsvi~~l~~ 320 (367)
T COG4069 253 IDHAAERSYELIEGAGLVVTVGDDTTEVAGDILYRFGIPIIGITDGDCDEVTREVNIAPGSVILLLKP 320 (367)
T ss_pred EecchhHHHHhhccCceEEEEcCcchhHHHHHHHhcCCcEEecccCChHHhhhhcccCCCcEEEEEcC
Confidence 35577888999999999999999764 23588999999999999999999999999999999998754
No 34
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.34 E-value=2.9e+02 Score=25.69 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHhcc----CCCCeEEEEec-C-CchhhhhchHHHHHHHHhCCCEEEEEecC
Q 023484 115 ETFKVKWSK----KAWKKAVIFVD-N-SGADIILGILPFARELLRRGTQVILAAND 164 (281)
Q Consensus 115 ~~~~~~L~~----~~~~~v~~l~D-N-aGeeiv~Dll~L~~~L~~~g~~V~~~vK~ 164 (281)
..+.+.|+. -.++++++|+- + .|. |++..|.+.|.+|+..-+.
T Consensus 143 ~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~-------pla~lL~~~gatVtv~~s~ 191 (286)
T PRK14175 143 LGIMEILKHADIDLEGKNAVVIGRSHIVGQ-------PVSKLLLQKNASVTILHSR 191 (286)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCchhHH-------HHHHHHHHCCCeEEEEeCC
Confidence 444555543 13578998874 3 455 7999999998888766543
No 35
>PHA02053 hypothetical protein
Probab=20.05 E-value=85 Score=24.71 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=31.0
Q ss_pred ecccCCcccCcCcccccHHHHHHhccccEEEEecCCCCCcc
Q 023484 200 IANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIET 240 (281)
Q Consensus 200 vi~~G~~~~g~~l~~~s~el~~~l~~ADLVI~KG~~Ny~~~ 240 (281)
++.+|.+-|.- ...+.+|.+.+.+-|+|.++|-|-| ++
T Consensus 56 li~sGddmP~D--~~ta~~F~kayR~~~VIysr~lGS~-Ds 93 (115)
T PHA02053 56 LIASGDDMPID--ANTATEFQKAYRSWGVIYSRSLGSY-DS 93 (115)
T ss_pred HHHcCCCCCCC--CCCHHHHHHHHHhcCeeeecCCCch-hH
Confidence 47788776543 3478899999999999999999999 54
Done!