Query 023484
Match_columns 281
No_of_seqs 107 out of 476
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 07:35:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xfi_A Unknown protein; struct 100.0 1.6E-68 5.6E-73 505.4 23.9 280 2-281 88-367 (367)
2 2g8l_A 287AA long hypothetical 100.0 6.7E-60 2.3E-64 435.8 18.4 238 7-278 58-296 (299)
3 2ffj_A Conserved hypothetical 100.0 5.8E-59 2E-63 430.0 17.7 240 8-277 59-299 (300)
4 3pt1_A UPF0364 protein YMR027W 100.0 1.4E-47 4.9E-52 370.3 11.8 248 12-262 110-429 (471)
5 1eik_A RNA polymerase subunit 48.2 7.9 0.00027 27.9 1.7 22 255-276 39-60 (77)
6 1hmj_A RPB5, protein (subunit 47.3 8 0.00027 28.0 1.6 22 255-276 37-58 (78)
7 4ayb_H DNA-directed RNA polyme 35.4 18 0.00061 26.5 1.9 20 256-275 46-65 (84)
8 3brc_A Conserved protein of un 35.1 16 0.00055 29.5 1.7 29 209-237 76-105 (156)
9 3oti_A CALG3; calicheamicin, T 33.1 48 0.0016 29.5 5.0 35 128-163 22-56 (398)
10 2ko2_A Reticulon-4; NOGO, memb 32.2 58 0.002 23.4 4.2 69 9-80 8-76 (79)
11 3tsa_A SPNG, NDP-rhamnosyltran 29.5 55 0.0019 28.9 4.7 34 128-162 3-36 (391)
12 4fzr_A SSFS6; structural genom 26.7 73 0.0025 28.3 5.0 35 128-163 17-51 (398)
13 3gpi_A NAD-dependent epimerase 26.4 65 0.0022 27.2 4.4 34 127-166 4-37 (286)
14 2qeu_A Putative carboxymuconol 24.7 2.3E+02 0.008 21.7 7.1 81 4-87 3-89 (141)
15 3h4t_A Glycosyltransferase GTF 22.0 68 0.0023 28.9 3.8 35 128-163 2-36 (404)
16 3ius_A Uncharacterized conserv 21.2 91 0.0031 26.1 4.3 34 127-166 6-39 (286)
17 1dzf_A DNA-directed RNA polyme 21.0 40 0.0014 28.9 1.9 23 255-277 178-200 (215)
18 2g1u_A Hypothetical protein TM 20.5 1.4E+02 0.0049 22.7 5.0 33 126-164 19-51 (155)
19 1edz_A 5,10-methylenetetrahydr 20.1 3.3E+02 0.011 24.3 7.9 36 126-166 177-212 (320)
No 1
>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A
Probab=100.00 E-value=1.6e-68 Score=505.39 Aligned_cols=280 Identities=87% Similarity=1.345 Sum_probs=244.9
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhc
Q 023484 2 KKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDL 81 (281)
Q Consensus 2 ~~~~~~~~~~pec~l~~~~~~~~~~~~g~~DPf~~~K~~~n~~al~~~~~l~~~l~~~~~~~~~~~~~lr~al~GN~~Dl 81 (281)
+++|+.+|.|+.|++.+++++++++.+|.+|||+++|+++|..|+++++.+.+.+++++++.++|.+++|+++|||++||
T Consensus 88 ~~~p~~~g~~~~~r~~~~~~~~il~~~g~~DPf~~~K~~~n~~al~~l~~l~~~l~~~~~~~~~l~~llr~al~GN~~Dl 167 (367)
T 1xfi_A 88 KKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDL 167 (367)
T ss_dssp HHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHC--
T ss_pred hhCccccCCcchHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccc
Confidence 46899999999999999999999999999999999999999999999999998887765566799999999999999999
Q ss_pred cchhhhhhhcccCCCHHHHhhhhCCCCCCcCcHHHHHHHhccCCCCeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEE
Q 023484 82 GSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILA 161 (281)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~ 161 (281)
|+..+.+.++++.+++.+.++++.+++|++||++++|+.|.+.++++|+||+||||+|+|+|+++||++|+++|++|+||
T Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~~~~~lvdd~~~l~~~L~~~~~k~Vl~v~DNAG~Eiv~D~L~La~~Ll~~g~kVvl~ 247 (367)
T 1xfi_A 168 GSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVVLA 247 (367)
T ss_dssp -------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHHHHHHHTTCEEEEE
T ss_pred ccccccccccccCCCHHHHHHHhhccCCCcCCHHHHHHHhcccCCCEEEEEecCCCchhhccHHHHHHHHHHcCCEEEEE
Confidence 99875444443346788888887788999999999999998655689999999999889999334999999999999999
Q ss_pred ecCCCccccCChHHHHHHHHHhhhhhhhhccccccceeecccCCcccCcCcccccHHHHHHhccccEEEEecCCCCCccc
Q 023484 162 ANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETN 241 (281)
Q Consensus 162 vK~~P~vnDvT~~D~~~~L~~l~~~d~~l~~l~~~~~~vi~~G~~~~g~~l~~~s~el~~~l~~ADLVI~KG~~Ny~~~~ 241 (281)
||++||+||||++|+.|+|+++...+..++.++++.+.|+++|+++||++|+++|++|++.|++|||||+||||||++++
T Consensus 248 vK~~P~vnDvT~~D~~~~L~~l~~~~~~L~~l~~g~l~vi~~G~~~~~~~l~~~s~el~~~l~~ADLVI~KG~gNyl~t~ 327 (367)
T 1xfi_A 248 ANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIETN 327 (367)
T ss_dssp EBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSEEEEESHHHHTTBS
T ss_pred ECCcCceeeCCHHHHHHHHHHHHhcchhhhhhccCcEEEEcCCCCCCCcChHHCCHHHHHHHccCCEEEEECCCCCCccc
Confidence 99999999999999999999986666667889999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCHHHHHHhCCCccCEEEEeccCCC
Q 023484 242 LYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS 281 (281)
Q Consensus 242 ~~~~~~~~~~~l~~~KC~~va~~lg~~~~~~v~~~~~~~~ 281 (281)
.++.|+||+++|+++||++||+.+|+++||+||+++++++
T Consensus 328 ~~~~f~~~i~~L~~iKc~~vA~~lg~~~~~~V~~~~~~~~ 367 (367)
T 1xfi_A 328 LYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQS 367 (367)
T ss_dssp TTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEECC--
T ss_pred hhhhcCcchhHHHhhCcHHHHHHhCCCcCCEEEEeCCCCC
Confidence 8889999999999999999999999999999999998764
No 2
>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1
Probab=100.00 E-value=6.7e-60 Score=435.75 Aligned_cols=238 Identities=19% Similarity=0.178 Sum_probs=213.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhccchhh
Q 023484 7 THGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQL 86 (281)
Q Consensus 7 ~~~~~pec~l~~~~~~~~~~~~g~~DPf~~~K~~~n~~al~~~~~l~~~l~~~~~~~~~~~~~lr~al~GN~~Dl~~~~~ 86 (281)
...+||+ +.+++|+++++.+|..|||+++|+++|+.|+++++.+++.+ .++|.+++++|+|||++|+|+...
T Consensus 58 ~~~~p~~--~~~~l~r~i~~~~g~~DPy~~~K~~~n~~al~~~~~~~~~l------~d~l~~~l~~sl~GN~~D~g~~~~ 129 (299)
T 2g8l_A 58 ENAIPAI--AGSLIFLELYKFLGNDDPFIEYKLKSEEMARKVADIIKRKL------KLDFELAVKLAIIGNVIDFSVGFS 129 (299)
T ss_dssp TTCCHHH--HHHHHHHHHHHHHTCSCTTHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCTTSCSC
T ss_pred CCCCcHH--HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhccccC
Confidence 3568898 99999999999999999999999999999999999887665 247999999999999999997432
Q ss_pred hhhhcccCCCHHHHhhhhCCCCCCcCcHHHHHHHhccCCCCeEEEEecCCchhhhhchHHHHHHHHh-CCCEEEEEecCC
Q 023484 87 AEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLR-RGTQVILAANDL 165 (281)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~~~v~~l~DNaGeeiv~Dll~L~~~L~~-~g~~V~~~vK~~ 165 (281)
+.++.+.+++..+++|.+||++++|+.|.+ +++|+||+||||| +|+|++ ||++|++ +|.+|++|||++
T Consensus 130 -------~~d~~~~~~~~~~~~~~~dd~~~l~~~l~~--~~~v~~v~DNaGE-iv~Dl~-l~~~Ll~~~g~~V~~~vK~~ 198 (299)
T 2g8l_A 130 -------PEDLEEEVEKMLKDKLYIDDSKELFEEVKR--AENILYITDNVGE-HYFDAI-LIEKIREISNAEVYIAGKEG 198 (299)
T ss_dssp -------HHHHHHHHHHHHTSCCSEECHHHHHHHHHH--CSEEEEECCBTTH-HHHHHH-HHHHHHHHCCCEEEEEEBSS
T ss_pred -------CCCHHHHHHHHhhcCCCcccHHHHHHHhcc--CCEEEEEecCCcc-HHHhHH-HHHHHHHhcCCeEEEEECCc
Confidence 134556666667889999999999999986 5899999999996 999997 9999999 999999999999
Q ss_pred CccccCChHHHHHHHHHhhhhhhhhccccccceeecccCCcccCcCcccccHHHHHHhccccEEEEecCCCCCccccccc
Q 023484 166 PSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQ 245 (281)
Q Consensus 166 P~vnDvT~~D~~~~L~~l~~~d~~l~~l~~~~~~vi~~G~~~~g~~l~~~s~el~~~l~~ADLVI~KG~~Ny~~~~~~~~ 245 (281)
||+||||++|+.|+ ++++ +..+|++|+++||++|+++|++|++.|++|||||+|||||| ++....
T Consensus 199 P~vnDvT~~D~~~~------------~~~~-~~~vi~~G~~~~g~~l~~~s~el~~~~~~adLVI~KG~~Ny-e~L~~d- 263 (299)
T 2g8l_A 199 PIINDATVEDLKRA------------GLEK-LGKVISTGTRIVGVPLKLVSREFMEAFNKADVIIAKGQGNF-ETLSEI- 263 (299)
T ss_dssp CCTTBCBHHHHHHT------------TGGG-TSEEEECSSSSSSCCTTTSCHHHHHHHHHCSEEEEEHHHHH-HHHTTS-
T ss_pred CceeeCCHHHHHHc------------Ccch-hhhhhcCCCCCCCCChHhCCHHHHHHHhcCCEEEEeCCchH-hhhhcC-
Confidence 99999999999997 6664 67999999999999999999999999999999999999999 665443
Q ss_pred cccccccccccCCHHHHHHhCCCccCEEEEecc
Q 023484 246 FKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNE 278 (281)
Q Consensus 246 ~~~~~~~l~~~KC~~va~~lg~~~~~~v~~~~~ 278 (281)
-++|+++|+++||+|||+.+|+++|++||++++
T Consensus 264 ~~~~i~~L~~~Kc~~va~~lG~~~g~~V~~~~~ 296 (299)
T 2g8l_A 264 NDSRIFFLLKAKCPAVARELKVPKGALVCMRNK 296 (299)
T ss_dssp CCTTEEEEEECCSHHHHHHHTSCTTCEEEEECC
T ss_pred CCCCeehhhhcCCHHHHHHhCCCCCCEEEEecc
Confidence 357899999999999999999999999999874
No 3
>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1
Probab=100.00 E-value=5.8e-59 Score=430.03 Aligned_cols=240 Identities=23% Similarity=0.197 Sum_probs=205.3
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhhccchhhh
Q 023484 8 HGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLA 87 (281)
Q Consensus 8 ~~~~pec~l~~~~~~~~~~~~g~~DPf~~~K~~~n~~al~~~~~l~~~l~~~~~~~~~~~~~lr~al~GN~~Dl~~~~~~ 87 (281)
..+||. +.+++||++.+.+|.+|||+++|+++|+.|+++++.+++.++. +.++|.+++++|+|||++|+|+....
T Consensus 59 ~~~p~~--~~~~lyr~i~~~~g~~Dpf~~~K~~~n~~a~~~l~~~~~~l~~---~~~~l~~~l~~sl~GN~~D~g~~~~~ 133 (300)
T 2ffj_A 59 RPINAH--LATRIHRRVYEILGVEDPYAEVKARANEVARQVLPLAKEIVEG---SDDPFKTAVIVSIVGNNFDYGVQGHK 133 (300)
T ss_dssp --CCHH--HHHHHHHHHHHHHTCSCTTHHHHHHHHHHHHHHHHHHHHHHHH---SSSHHHHHHHHHHHGGGCCC------
T ss_pred CCCcHH--HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHhhHhhhccccccc
Confidence 568888 8999999999999999999999999999999999988777643 34689999999999999999984321
Q ss_pred hhhcccCCCHHHHhhhhCCCCCCcCcHHHHHHHhccCCCCeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecCCCc
Q 023484 88 EVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPS 167 (281)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P~ 167 (281)
. + ++++.+.+++..+++|++||++++|+.|. ++|+||+|||| |+|+|++ ||++|+++|.+|++|||++||
T Consensus 134 ~--~--~~d~~~~~~~~~~~~~~~dd~~~~~~~l~----~~v~~v~DNaG-Eiv~Dll-l~~~Ll~~g~~V~~~vK~~P~ 203 (300)
T 2ffj_A 134 V--V--EEEFRDFLKRKVQEGLKINDTERIKELSS----GKVVYLTDNAG-EIFFDTL-LMKEIKRRCEKLTAVVRGRPI 203 (300)
T ss_dssp C--H--HHHHHHHHHHHHHHCCSEECHHHHHHHTT----SEEEEECCBTT-HHHHHHH-HHHHHHTTCSEEEEEEBSSCC
T ss_pred c--c--CCCHHHHHHHhhccCcCcCCHHHHHHHhc----CCEEEEecCCc-cHHHHHH-HHHHHHHcCCeEEEEECCcCc
Confidence 0 0 13445556555677899999999999996 79999999999 5999998 999999999999999999999
Q ss_pred cccCChHHHHHHHHHhhhhhhhhccccccceeeccc-CCcccCcCcccccHHHHHHhccccEEEEecCCCCCcccccccc
Q 023484 168 INDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANS-GNDLPVIDLTAVSQELAYLASDADLVILEGMGRGIETNLYAQF 246 (281)
Q Consensus 168 vnDvT~~D~~~~L~~l~~~d~~l~~l~~~~~~vi~~-G~~~~g~~l~~~s~el~~~l~~ADLVI~KG~~Ny~~~~~~~~~ 246 (281)
+||||++|+.|+ +++ ++..+|++ |+++||++|+++|++|++.|++|||||+|||||| ++.+-+ .
T Consensus 204 vnDvT~~D~~~~------------~l~-~~~~vi~~~G~~~~~~~l~~~s~el~~~l~~adLVI~KG~~Ny-r~L~~~-~ 268 (300)
T 2ffj_A 204 ISDATIEDARLA------------RVD-KIADELLTNGKGAIGIIMDELPDETRKALEEADLIVAKGMANY-ECLSDG-S 268 (300)
T ss_dssp TTBCBHHHHHHT------------THH-HHSSEEEECSSCCSSCCGGGCCHHHHHHHHHCSEEEEESHHHH-HHHC----
T ss_pred eecCCHHHHHHh------------hhh-HHHhhhcCCCCCCCCcChHhCCHHHHHHHccCCEEEEECChHH-HHHhCC-C
Confidence 999999999997 455 37789999 9999999999999999999999999999999999 766554 3
Q ss_pred ccccccccccCCHHHHHHhCCCccCEEEEec
Q 023484 247 KCDSLKIGMVKHPEVAQFLGGRLYDCVFKYN 277 (281)
Q Consensus 247 ~~~~~~l~~~KC~~va~~lg~~~~~~v~~~~ 277 (281)
++|+++|+++||+|||+++|+++|++||++-
T Consensus 269 ~~~i~~L~~~Kc~vva~~lG~~~g~~v~~~~ 299 (300)
T 2ffj_A 269 LKPIAFLLTAKCEPVARDIGVNVGDMVAKVV 299 (300)
T ss_dssp CCSEEEEEECCSHHHHHHHTSCTTCEEEEEE
T ss_pred CcchHHHHHhCCHHHHHHhCCCCCCeEEEeC
Confidence 6789999999999999999999999999863
No 4
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-47 Score=370.30 Aligned_cols=248 Identities=21% Similarity=0.181 Sum_probs=189.9
Q ss_pred hHHHHHHHHHHHHHH--HcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh----------------hhhHHHHHHHHHH
Q 023484 12 PDCILLCRLREQVLR--ELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIE----------------DEGKRVESLIRGI 73 (281)
Q Consensus 12 pec~l~~~~~~~~~~--~~g~~DPf~~~K~~~n~~al~~~~~l~~~l~~~~----------------~~~~~~~~~lr~a 73 (281)
.||||||||+..|.. .+..+|||+.+|+.++..+...+..+.+++..+. ...+.|.+++++|
T Consensus 110 aEcYlYRri~~~f~~s~~~~~~D~F~~qK~~~f~~s~~av~~La~~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~l~is 189 (471)
T 3pt1_A 110 SEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREMKQNPGNEIDDILKVLFKEFIEIS 189 (471)
T ss_dssp HHHHHHHHHHHHHHHSTTTTTCCTTHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCcCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 799999999999986 5899999999999999988887766665433221 1135699999999
Q ss_pred HhhhhhhccchhhhhhhcccCCCHH-HHhhhhCCCCCCcCcHHHHHHHhccC------CCCeEEEEecCCchhhhhchHH
Q 023484 74 FAGNIFDLGSAQLAEVFSKDGMSFL-ASCQNLVPRPWVIDDLETFKVKWSKK------AWKKAVIFVDNSGADIILGILP 146 (281)
Q Consensus 74 l~GN~~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dd~~~~~~~L~~~------~~~~v~~l~DNaGeeiv~Dll~ 146 (281)
+|||.+|||+..+....+ ...+. ....+.++++|++||++++|+.|.+. +.++|+||+||||+|+|+|++
T Consensus 190 LWGN~~DLsl~~~~~~~~--~~~~~~~~~~~~~~~~ilvdD~~~l~~~L~~~k~~~~~~~~rVdiVlDNaGfEl~~Dl~- 266 (471)
T 3pt1_A 190 LWGNATDLSLLTNATLED--IKSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLM- 266 (471)
T ss_dssp HHGGGCCHHHHTCCSHHH--HHSHHHHHHHHHHHTTEEEECHHHHHHHHHHHHHCSSCCCCEEEEECCBSTHHHHHHHH-
T ss_pred HHhhhhcccccCCcchHh--hhhhhhHHHHHHhhcCccccCHHHHHHHHHHhhccccCCCceEEEEEeCCcchhhHHHH-
Confidence 999999999976421000 01121 11222346789999999999999742 235999999999977999998
Q ss_pred HHHHHHhCC--CEEEEEecCCC-ccccCChHHHHHHHHHhhhh------------hhhhccccccceeecccC-------
Q 023484 147 FARELLRRG--TQVILAANDLP-SINDVTYPELIEIMSKLKDE------------KGQLMGVDTSKLLIANSG------- 204 (281)
Q Consensus 147 L~~~L~~~g--~~V~~~vK~~P-~vnDvT~~D~~~~L~~l~~~------------d~~l~~l~~~~~~vi~~G------- 204 (281)
||++|++.| .+|+||||++| ||||||++|+.|+|++|..+ ++.++.++++|...+.+|
T Consensus 267 Lae~Ll~~gla~~V~~hvK~~PwfVSDvT~~D~~~~l~~L~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~G~~~~~~~ 346 (471)
T 3pt1_A 267 LAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFRED 346 (471)
T ss_dssp HHHHHHHHTSCSEEEEEEBSSCCTTTBCBHHHHHHHHHHHHCTTTSCCCSTTSHHHHHHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHcCCCcEEEEEecCCCceeecCcHHHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHCCCEEEeCC
Confidence 999999876 69999999999 69999999999999999853 234555554455555555
Q ss_pred -C---cccCcCccccc-----HHHHHHhccccEEEEecCCCC--C-------cc-------ccccccccccccccccCCH
Q 023484 205 -N---DLPVIDLTAVS-----QELAYLASDADLVILEGMGRG--I-------ET-------NLYAQFKCDSLKIGMVKHP 259 (281)
Q Consensus 205 -~---~~~g~~l~~~s-----~el~~~l~~ADLVI~KG~~Ny--~-------~~-------~~~~~~~~~~~~l~~~KC~ 259 (281)
. +++++.|+... |++++.|++|+|||||||+|| | .+ .-|...+||++.|+++|++
T Consensus 347 ~FWT~p~~y~~Mp~~~~~~~~p~L~~~L~~S~LVIFKGDLNYRKL~GD~~W~~tTpF~~al~~f~p~~~~v~aLRT~Kad 426 (471)
T 3pt1_A 347 SFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKAD 426 (471)
T ss_dssp GGGGSSCCGGGSSTTCCSSSHHHHHHHHTTCSEEEEEHHHHHHHHHTTBCCCTTCCHHHHTGGGGTSSCCEEEEEECCSS
T ss_pred CccCCCcchhhCChhhcccCCHHHHHHHhhCcEEEEecchhhhhhccccCCCCCCCHHHHhcccCCCCcceeeeeecccc
Confidence 3 35566666666 799999999999999999999 1 11 1222345899999999999
Q ss_pred HHH
Q 023484 260 EVA 262 (281)
Q Consensus 260 ~va 262 (281)
+++
T Consensus 427 vvv 429 (471)
T 3pt1_A 427 VQV 429 (471)
T ss_dssp CCC
T ss_pred eee
Confidence 874
No 5
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=48.18 E-value=7.9 Score=27.94 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=18.5
Q ss_pred ccCCHHHHHHhCCCccCEEEEe
Q 023484 255 MVKHPEVAQFLGGRLYDCVFKY 276 (281)
Q Consensus 255 ~~KC~~va~~lg~~~~~~v~~~ 276 (281)
+-+.+|+|+++|.+.||+|=.-
T Consensus 39 I~~~DPvar~~G~k~GdVvkI~ 60 (77)
T 1eik_A 39 IKTTDPVAKAIGAKRGDIVKII 60 (77)
T ss_dssp CBTTSHHHHGGGCCTTCEEEEE
T ss_pred eeCcCHhhHHhCCCCCCEEEEE
Confidence 4578999999999999987553
No 6
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=47.31 E-value=8 Score=27.99 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=18.5
Q ss_pred ccCCHHHHHHhCCCccCEEEEe
Q 023484 255 MVKHPEVAQFLGGRLYDCVFKY 276 (281)
Q Consensus 255 ~~KC~~va~~lg~~~~~~v~~~ 276 (281)
+-+.+|+|+++|.+.||+|=.-
T Consensus 37 I~~~DPvar~~G~k~GdVvkI~ 58 (78)
T 1hmj_A 37 IYEDDPVIQEIGAKEGDVVRVI 58 (78)
T ss_pred eeCcCHhhHHhCCCCCCEEEEE
Confidence 4578999999999999987553
No 7
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=35.38 E-value=18 Score=26.46 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=17.0
Q ss_pred cCCHHHHHHhCCCccCEEEE
Q 023484 256 VKHPEVAQFLGGRLYDCVFK 275 (281)
Q Consensus 256 ~KC~~va~~lg~~~~~~v~~ 275 (281)
-+-+|+|+++|.+.||+|=.
T Consensus 46 ~~~DPva~~~g~k~GdVvkI 65 (84)
T 4ayb_H 46 RASDPVARSINAKPGDIIRI 65 (84)
T ss_dssp ESSSHHHHHHTCCTTCEEEE
T ss_pred cccCHhHHhhCCCCCCEEEE
Confidence 37789999999999997743
No 8
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=35.13 E-value=16 Score=29.53 Aligned_cols=29 Identities=38% Similarity=0.382 Sum_probs=22.1
Q ss_pred CcCcccccHHHHHH-hccccEEEEecCCCC
Q 023484 209 VIDLTAVSQELAYL-ASDADLVILEGMGRG 237 (281)
Q Consensus 209 g~~l~~~s~el~~~-l~~ADLVI~KG~~Ny 237 (281)
-+.|+.++..+... ..+|||||++|-+--
T Consensus 76 lTRmPA~~K~LmAvD~~dADlvIARGRLGv 105 (156)
T 3brc_A 76 LTRMPAVTKALMALDISGADLVIARGRLGV 105 (156)
T ss_dssp GSSSHHHHHHHHHHHHHCCSEEEEEEECSS
T ss_pred cccCcHHHHHHHheeccCCcEEEEcccccC
Confidence 45566666666665 479999999999885
No 9
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=33.14 E-value=48 Score=29.53 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=29.3
Q ss_pred eEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEec
Q 023484 128 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAN 163 (281)
Q Consensus 128 ~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK 163 (281)
+|++++...+. -+.-+++|++.|.+.|++|+++.-
T Consensus 22 rIl~~~~~~~G-hv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 22 RVLFVSSPGIG-HLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp EEEEECCSSHH-HHGGGHHHHHHHHHTTCEEEEEES
T ss_pred EEEEEcCCCcc-hHhHHHHHHHHHHHCCCEEEEecc
Confidence 89999988877 445566799999999999999864
No 10
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=32.23 E-value=58 Score=23.43 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=42.3
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhh
Q 023484 9 GGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFD 80 (281)
Q Consensus 9 ~~~pec~l~~~~~~~~~~~~g~~DPf~~~K~~~n~~al~~~~~l~~~l~~~~~~~~~~~~~lr~al~GN~~D 80 (281)
.-|.-||+|+.+.+.+.+. ....||+.-=+.......+......... +.-....+.++-++.+..|..|
T Consensus 8 ~~~~sfRiYk~vlqavqKt-d~~hPFk~YLd~Di~ls~E~~~~~~~~~--v~~in~~l~~LRrLfLVedlvD 76 (79)
T 2ko2_A 8 LVPRGMRIYKGVIQAIQKS-DEGHPFRAYLESEVAISEELVQKYSNSA--LGHVNSTIKELRRLFLVDDLVD 76 (79)
T ss_dssp -----CTHHHHTHHHHHCT-TTTCCSHHHHHHHHHHTTCHHHHHHHCT--TTHHHHHHHHHHHHHHHTCTTG
T ss_pred cchHHHHHHHHHHHHHHhC-CCCCCccccccccccCCHHHHHHHHHHH--HHHHHHHHHHHhHHhhcccHHH
Confidence 3566678888888777655 5788999877766666555554444332 1112245788888888888765
No 11
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=29.50 E-value=55 Score=28.88 Aligned_cols=34 Identities=18% Similarity=0.402 Sum_probs=27.8
Q ss_pred eEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEe
Q 023484 128 KAVIFVDNSGADIILGILPFARELLRRGTQVILAA 162 (281)
Q Consensus 128 ~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~v 162 (281)
+|++++...+-++ .-+++|++.|.+.|++|+++.
T Consensus 3 rIl~~~~~~~gh~-~~~~~la~~L~~~GheV~v~~ 36 (391)
T 3tsa_A 3 RVLVVPLPYPTHL-MAMVPLCWALQASGHEVLIAA 36 (391)
T ss_dssp EEEEECCSCHHHH-HTTHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEcCCCcchh-hhHHHHHHHHHHCCCEEEEec
Confidence 6888888877744 456579999999999999986
No 12
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=26.66 E-value=73 Score=28.26 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=28.7
Q ss_pred eEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEec
Q 023484 128 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAN 163 (281)
Q Consensus 128 ~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK 163 (281)
+|++++...+-++ .-+++|++.|.+.|++|+++.-
T Consensus 17 rIl~~~~~~~gh~-~~~~~La~~L~~~GheV~v~~~ 51 (398)
T 4fzr_A 17 RILVIAGCSEGFV-MPLVPLSWALRAAGHEVLVAAS 51 (398)
T ss_dssp EEEEECCSSHHHH-GGGHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEcCCCcchH-HHHHHHHHHHHHCCCEEEEEcC
Confidence 8999988877744 4555799999999999999863
No 13
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=26.41 E-value=65 Score=27.20 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=28.5
Q ss_pred CeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecCCC
Q 023484 127 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 166 (281)
Q Consensus 127 ~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P 166 (281)
++|++.+ ||. ...- +++.|++.|++|+...|..+
T Consensus 4 ~~ilVtG--aG~---iG~~-l~~~L~~~g~~V~~~~r~~~ 37 (286)
T 3gpi_A 4 SKILIAG--CGD---LGLE-LARRLTAQGHEVTGLRRSAQ 37 (286)
T ss_dssp CCEEEEC--CSH---HHHH-HHHHHHHTTCCEEEEECTTS
T ss_pred CcEEEEC--CCH---HHHH-HHHHHHHCCCEEEEEeCCcc
Confidence 5788887 598 5886 89999999999999998754
No 14
>2qeu_A Putative carboxymuconolactone decarboxylase; YP_555818.1, carboxymuconolactone decarboxylase family; HET: CIT GOL; 1.65A {Burkholderia xenovorans}
Probab=24.70 E-value=2.3e+02 Score=21.69 Aligned_cols=81 Identities=10% Similarity=0.069 Sum_probs=43.2
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHHHHHHHHhh----hhhhhhHHHHHHHHHHHhhhh
Q 023484 4 DPETHGGPPDCILLCRLREQVLRELGFRDI-FKKVKDEENAKAISLFGDVVRLND----VIEDEGKRVESLIRGIFAGNI 78 (281)
Q Consensus 4 ~~~~~~~~pec~l~~~~~~~~~~~~g~~DP-f~~~K~~~n~~al~~~~~l~~~l~----~~~~~~~~~~~~lr~al~GN~ 78 (281)
+|+++.+..+ ++....+.+.+.+|..-+ +....+.+ -..++.+..+.+.+- .-..-+.+.++++.+++..|.
T Consensus 3 ~~~~~~~~~~--~l~~~~~~~~~~~G~vP~~~~~l~~~~-P~~~~~~~~l~~~~~~~~~~~~~Ld~k~reLI~lavs~ng 79 (141)
T 2qeu_A 3 DQESNATSQD--ILKQHAAHYESDMGGLPEALVQLAEYA-PETFDAYSRMRTTMLKSEADGAKLPLKYKHLILVVLDAIR 79 (141)
T ss_dssp -----CCHHH--HHHHHHHHHHHHHSSCCHHHHHHHHHC-HHHHHHHHHHHHHHTCCGGGTCSSCHHHHHHHHHHHHHHH
T ss_pred CCccchhHHH--HHHHHHHHHHHHHccchHHHHHHHHhC-HHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHhC
Confidence 3566666666 666666657777776543 33333322 233333333444431 111223578888888888999
Q ss_pred hh-ccchhhh
Q 023484 79 FD-LGSAQLA 87 (281)
Q Consensus 79 ~D-l~~~~~~ 87 (281)
++ +.+..+.
T Consensus 80 C~~~Cl~~H~ 89 (141)
T 2qeu_A 80 DEPIGIVNHT 89 (141)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 99 8876653
No 15
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=22.00 E-value=68 Score=28.89 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=27.6
Q ss_pred eEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEec
Q 023484 128 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAN 163 (281)
Q Consensus 128 ~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK 163 (281)
+|+++++-+..++. =+++|++.|.+.|++|+++.-
T Consensus 2 rIli~~~gt~Ghv~-p~~~La~~L~~~Gh~V~v~~~ 36 (404)
T 3h4t_A 2 GVLITGCGSRGDTE-PLVALAARLRELGADARMCLP 36 (404)
T ss_dssp CEEEEEESSHHHHH-HHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEeCCCCccHH-HHHHHHHHHHHCCCeEEEEeC
Confidence 57788877777455 444699999999999999864
No 16
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=21.24 E-value=91 Score=26.10 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=28.2
Q ss_pred CeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecCCC
Q 023484 127 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 166 (281)
Q Consensus 127 ~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P 166 (281)
++|++.+ ||. ...- +++.|++.|++|+..+|..+
T Consensus 6 ~~ilVtG--aG~---iG~~-l~~~L~~~g~~V~~~~r~~~ 39 (286)
T 3ius_A 6 GTLLSFG--HGY---TARV-LSRALAPQGWRIIGTSRNPD 39 (286)
T ss_dssp CEEEEET--CCH---HHHH-HHHHHGGGTCEEEEEESCGG
T ss_pred CcEEEEC--CcH---HHHH-HHHHHHHCCCEEEEEEcChh
Confidence 5788887 488 5886 89999999999999998754
No 17
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=21.01 E-value=40 Score=28.89 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=18.9
Q ss_pred ccCCHHHHHHhCCCccCEEEEec
Q 023484 255 MVKHPEVAQFLGGRLYDCVFKYN 277 (281)
Q Consensus 255 ~~KC~~va~~lg~~~~~~v~~~~ 277 (281)
+-+.+|||+++|.++||+|=.-.
T Consensus 178 I~~~DPvar~~g~k~G~vvkI~R 200 (215)
T 1dzf_A 178 IQRADPVALYLGLKRGEVVKIIR 200 (215)
T ss_dssp ECTTCHHHHHHTCCTTCEEEEEC
T ss_pred eeccChhhHHhCCcCCCEEEEEE
Confidence 35788999999999999876543
No 18
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=20.52 E-value=1.4e+02 Score=22.73 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=27.4
Q ss_pred CCeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecC
Q 023484 126 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 164 (281)
Q Consensus 126 ~~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~ 164 (281)
..+|++++ +|. +-.. +++.|.+.|.+|++..+.
T Consensus 19 ~~~v~IiG--~G~---iG~~-la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 19 SKYIVIFG--CGR---LGSL-IANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCEEEEEC--CSH---HHHH-HHHHHHHTTCEEEEEESC
T ss_pred CCcEEEEC--CCH---HHHH-HHHHHHhCCCeEEEEECC
Confidence 46899997 688 5786 899999999999988764
No 19
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=20.09 E-value=3.3e+02 Score=24.35 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=27.0
Q ss_pred CCeEEEEecCCchhhhhchHHHHHHHHhCCCEEEEEecCCC
Q 023484 126 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 166 (281)
Q Consensus 126 ~~~v~~l~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P 166 (281)
++++++|+ +|+ +| .. |++..|...|.+|++.-|..+
T Consensus 177 gk~vvVIG--~G~-iV-G~-~~A~~L~~~gAtVtv~nR~~~ 212 (320)
T 1edz_A 177 GKKCIVIN--RSE-IV-GR-PLAALLANDGATVYSVDVNNI 212 (320)
T ss_dssp TCEEEEEC--CCT-TT-HH-HHHHHHHTTSCEEEEECSSEE
T ss_pred CCEEEEEC--CCc-ch-HH-HHHHHHHHCCCEEEEEeCchH
Confidence 57999997 555 32 44 589999999999998876643
Done!