Query 023485
Match_columns 281
No_of_seqs 165 out of 354
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 1.5E-66 3.2E-71 442.8 20.7 152 95-278 1-154 (154)
2 PF12937 F-box-like: F-box-lik 98.8 4.5E-09 9.8E-14 71.7 3.4 45 1-45 1-45 (47)
3 PF00646 F-box: F-box domain; 98.4 1E-07 2.2E-12 64.8 0.7 44 1-44 3-46 (48)
4 smart00256 FBOX A Receptor for 98.3 5.7E-07 1.2E-11 58.5 4.0 40 4-43 1-40 (41)
5 PF06881 Elongin_A: RNA polyme 94.6 0.025 5.5E-07 45.4 2.4 71 1-76 4-74 (109)
6 KOG2997 F-box protein FBX9 [Ge 93.0 0.041 8.8E-07 52.3 1.2 81 1-83 107-194 (366)
7 KOG3926 F-box proteins [Amino 84.9 0.62 1.4E-05 43.6 2.3 49 1-49 202-251 (332)
8 KOG4408 Putative Mg2+ and Co2+ 84.5 0.28 6.1E-06 47.0 -0.2 48 2-49 9-56 (386)
9 PLN03215 ascorbic acid mannose 83.5 1 2.2E-05 44.0 3.1 37 2-38 5-42 (373)
10 KOG0274 Cdc4 and related F-box 82.6 0.89 1.9E-05 46.3 2.5 48 2-49 109-156 (537)
11 KOG2120 SCF ubiquitin ligase, 78.3 2.1 4.7E-05 41.1 3.3 43 1-43 98-140 (419)
12 PF02018 CBM_4_9: Carbohydrate 58.4 83 0.0018 24.2 9.2 31 149-185 57-87 (131)
13 PF13013 F-box-like_2: F-box-l 57.8 12 0.00025 30.4 3.1 40 1-42 22-61 (109)
14 KOG0281 Beta-TrCP (transducin 37.5 26 0.00056 34.3 2.5 40 2-41 76-119 (499)
15 KOG4114 Cytochrome c oxidase a 37.3 14 0.0003 27.6 0.5 16 2-17 39-54 (73)
16 KOG3233 RNA polymerase III, su 27.7 12 0.00026 35.2 -1.5 45 92-144 137-185 (297)
17 PF14109 GldH_lipo: GldH lipop 27.2 2.5E+02 0.0054 23.1 6.5 45 150-195 29-73 (131)
18 KOG1496 Malate dehydrogenase [ 20.4 72 0.0016 29.9 2.1 42 231-275 256-304 (332)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=1.5e-66 Score=442.84 Aligned_cols=152 Identities=61% Similarity=1.174 Sum_probs=142.9
Q ss_pred CceEEEEecccceeeecCCCCceeeeecCCCCcccceEEeeeeeEEEEEEEeccccCCCceEEEEEEEEecCCcCCCccc
Q 023485 95 GKKCYMISARDLLIVWGNTPTYWSWTSIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQ 174 (281)
Q Consensus 95 G~kCymLsAR~L~ItWgd~~~YW~W~~~p~SrF~EVAeL~~VcWLeI~G~i~t~~LSp~t~Y~aylv~kl~~~~~G~~~~ 174 (281)
||||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~ 80 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP 80 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CEEEEEEEeCCce--eeEEEeccccccccccccccccCCCCCCCCCCCCCCCCccccCCceEEEEeeeEEeCCCCCCcEE
Q 023485 175 PVVVSVGLVSGES--QTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGDFFNEEDVEDGEL 252 (281)
Q Consensus 175 pv~~sv~~~g~~~--~~~~V~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~DgW~EielGeF~~~~~~~~~eV 252 (281)
||+++|+++++.. ..+.+++ |++|+|||||||+|||+|++ +++++|
T Consensus 81 pv~~~v~~~~~~~~~~~~~~~~-------------------------------~~~r~dgW~Eie~GeF~~~~-~~~~ev 128 (154)
T PF14299_consen 81 PVEFSVKVPDGEKYEQERKVCL-------------------------------PKERGDGWMEIELGEFFNEG-GDDGEV 128 (154)
T ss_pred CEEEEEEeCCCccccceeeEEc-------------------------------CCCCCCCEEEEEcceEEecC-CCCcEE
Confidence 9999999987755 2344443 55788999999999999998 789999
Q ss_pred EEEEEEEeCCcccceEEEEEEEEEec
Q 023485 253 EMSVLELACGHWKCGLVIQGIEIRPK 278 (281)
Q Consensus 253 ~fsl~E~~~~~wK~GLiv~GIeIRPk 278 (281)
+|+|+|+++++||+||||+|||||||
T Consensus 129 ~f~~~E~~~~~wK~GLiv~GieIRPK 154 (154)
T PF14299_consen 129 EFSMYEVDSGHWKGGLIVEGIEIRPK 154 (154)
T ss_pred EEEEEEecCCcccCeEEEEEEEEecC
Confidence 99999999999999999999999998
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.79 E-value=4.5e-09 Score=71.72 Aligned_cols=45 Identities=27% Similarity=0.537 Sum_probs=40.5
Q ss_pred CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCC
Q 023485 1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFL 45 (281)
Q Consensus 1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fl 45 (281)
|.+||+|.+..|+++++|.|.+++++|||.|+.++.++.+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 679999999999999999999999999999999999999998764
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.36 E-value=1e-07 Score=64.77 Aligned_cols=44 Identities=27% Similarity=0.545 Sum_probs=38.2
Q ss_pred CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccC
Q 023485 1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESF 44 (281)
Q Consensus 1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f 44 (281)
|.+||++++..|++++++.|.++++.||+.|+.+++++..|..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 35799999999999999999999999999999999999999764
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.35 E-value=5.7e-07 Score=58.51 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=38.6
Q ss_pred chhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhcc
Q 023485 4 LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWES 43 (281)
Q Consensus 4 Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~ 43 (281)
||++++..|+++++|.|.+++++||+.|+.+++++.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=94.56 E-value=0.025 Score=45.37 Aligned_cols=71 Identities=15% Similarity=0.295 Sum_probs=57.4
Q ss_pred CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCCCccccccccCCCCCCCCCcHHHHHHhhcC
Q 023485 1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLRSSSKKELYFSLCH 76 (281)
Q Consensus 1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~~~i~~~~~~~~~~~~~skkely~~L~~ 76 (281)
++++|.+.|.-||...+|....++..-|+.+ +-++|.+|.+|+=.||..-..... +.+..+-+++|.++.+
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~---~~~~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK---PKEPESWRELYEKLKK 74 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc---ccccchHHHHHHHHHH
Confidence 4789999999999999999999999999766 567999999999999975222211 2345689999998864
No 6
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.05 E-value=0.041 Score=52.35 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=56.8
Q ss_pred CCCchhHHHHHHHhc-----CChHhHHHHhhhcHHHHHhhccchhhccCCCCCccccccccCCC-C-CCCCCcHHHHHHh
Q 023485 1 MELLPEGCIANAISF-----TTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSS-S-SLRSSSKKELYFS 73 (281)
Q Consensus 1 ~~~Lpe~ci~~ils~-----t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~~~i~~~~~~~-~-~~~~~skkely~~ 73 (281)
|..||++.+-.|+.. ++-++.-++|+||+.|+-+|..|.+|+.+|=.-|..-+-...+- . .--..|-+++|+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~ 186 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE 186 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence 467999998888765 45599999999999999999999999999887664422211110 0 0013577888875
Q ss_pred hcCCCeeecC
Q 023485 74 LCHNPILIDE 83 (281)
Q Consensus 74 L~~~pvlld~ 83 (281)
=. -|.+|+
T Consensus 187 Rp--RvrFdG 194 (366)
T KOG2997|consen 187 RP--RVRFDG 194 (366)
T ss_pred Cc--ceeecc
Confidence 43 466654
No 7
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=84.91 E-value=0.62 Score=43.60 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=43.0
Q ss_pred CCCchhHHHHHHHhcCC-hHhHHHHhhhcHHHHHhhccchhhccCCCCCc
Q 023485 1 MELLPEGCIANAISFTT-PRDACRLSSVSAIFKLAAESDAVWESFLPPDY 49 (281)
Q Consensus 1 ~~~Lpe~ci~~ils~t~-P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~ 49 (281)
+-|||++|+..||-+++ -+|.--+|.|-.++...++.+-+|.+.+-=.|
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF 251 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHF 251 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 45899999999999765 89999999999999999999999998776443
No 8
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=84.48 E-value=0.28 Score=47.03 Aligned_cols=48 Identities=23% Similarity=0.213 Sum_probs=43.8
Q ss_pred CCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCCCc
Q 023485 2 ELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDY 49 (281)
Q Consensus 2 ~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~ 49 (281)
+.||.+-+..+++++.++++.+.|+||+.+...++-+..|++++-.++
T Consensus 9 e~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 9 EWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred hhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 567888899999999999999999999999999999999999995544
No 9
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=83.49 E-value=1 Score=43.96 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=34.0
Q ss_pred CCchhHHHHHHHhcC-ChHhHHHHhhhcHHHHHhhccc
Q 023485 2 ELLPEGCIANAISFT-TPRDACRLSSVSAIFKLAAESD 38 (281)
Q Consensus 2 ~~Lpe~ci~~ils~t-~P~d~cr~a~vs~~fr~aa~sd 38 (281)
.+||+|.+..|..++ +..|..|+++||++.|+|+...
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence 479999999999998 7999999999999999998863
No 10
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=82.60 E-value=0.89 Score=46.34 Aligned_cols=48 Identities=23% Similarity=0.298 Sum_probs=42.8
Q ss_pred CCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCCCc
Q 023485 2 ELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDY 49 (281)
Q Consensus 2 ~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~ 49 (281)
..||-+-.-.||+++++++.|.+++||+.|+..++.|.+|.+.+....
T Consensus 109 ~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~ 156 (537)
T KOG0274|consen 109 SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELI 156 (537)
T ss_pred hcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhc
Confidence 468888888999999999999999999999999999999986666543
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=78.31 E-value=2.1 Score=41.05 Aligned_cols=43 Identities=19% Similarity=0.399 Sum_probs=40.4
Q ss_pred CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhcc
Q 023485 1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWES 43 (281)
Q Consensus 1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~ 43 (281)
++.||++.+-.|+|.+--.|.-++|.||+.|...|.....|..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 4689999999999999999999999999999999999999953
No 12
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=58.37 E-value=83 Score=24.20 Aligned_cols=31 Identities=39% Similarity=0.484 Sum_probs=22.6
Q ss_pred ccCCCceEEEEEEEEecCCcCCCcccCEEEEEEEeCC
Q 023485 149 SLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLVSG 185 (281)
Q Consensus 149 ~LSp~t~Y~aylv~kl~~~~~G~~~~pv~~sv~~~g~ 185 (281)
.|.||.+|.+.+-+|.... .++.+.+...++
T Consensus 57 ~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~~~~ 87 (131)
T PF02018_consen 57 SLKPGKTYTVSFWVKADSG------GTVSVSLRDEDG 87 (131)
T ss_dssp EE-TTSEEEEEEEEEESSS------EEEEEEEEESST
T ss_pred EecCCCEEEEEEEEEeCCC------CEEEEEEEEcCC
Confidence 3669999999999999874 566666665544
No 13
>PF13013 F-box-like_2: F-box-like domain
Probab=57.82 E-value=12 Score=30.38 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=34.9
Q ss_pred CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhc
Q 023485 1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWE 42 (281)
Q Consensus 1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~ 42 (281)
+.|||+|.+..|+.+-++.+...+...++++|.+.+. .|.
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~--~~~ 61 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH--IWY 61 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH--HHH
Confidence 4689999999999999999999999999999988544 553
No 14
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=37.54 E-value=26 Score=34.31 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=34.4
Q ss_pred CCch----hHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhh
Q 023485 2 ELLP----EGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVW 41 (281)
Q Consensus 2 ~~Lp----e~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW 41 (281)
+.|| +.....|||+++..+.|..-.||+..+.+-+.--+|
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~W 119 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLW 119 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHH
Confidence 4688 888889999999999999999999988877665555
No 15
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=37.27 E-value=14 Score=27.62 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.8
Q ss_pred CCchhHHHHHHHhcCC
Q 023485 2 ELLPEGCIANAISFTT 17 (281)
Q Consensus 2 ~~Lpe~ci~~ils~t~ 17 (281)
.+|||+|++.+=.|++
T Consensus 39 ~~vPeeC~al~~af~d 54 (73)
T KOG4114|consen 39 KDVPEECIALMKAFLD 54 (73)
T ss_pred ccCcHHHHHHHHHHHH
Confidence 3699999999998875
No 16
>KOG3233 consensus RNA polymerase III, subunit C34 [Transcription]
Probab=27.71 E-value=12 Score=35.22 Aligned_cols=45 Identities=33% Similarity=0.494 Sum_probs=30.4
Q ss_pred ecCCceEEEEec--ccceeeecCCCCceeeeecC--CCCcccceEEeeeeeEEEEEE
Q 023485 92 KQSGKKCYMISA--RDLLIVWGNTPTYWSWTSIP--EARFPEVAELICVCWLEIRGK 144 (281)
Q Consensus 92 k~sG~kCymLsA--R~L~ItWgd~~~YW~W~~~p--~SrF~EVAeL~~VcWLeI~G~ 144 (281)
+.+++|||||.. -..+||.| .|.+-- |+-|.|+ |+++||.=+.-+
T Consensus 137 ~n~~~KvYmLy~leP~~elTGG------~WytDqdlDvEfIe~--L~~~c~~fl~~~ 185 (297)
T KOG3233|consen 137 KNSRKKVYMLYDLEPDSELTGG------TWYTDQDLDVEFIEV--LKQICVRFLESK 185 (297)
T ss_pred cCCCceEEEEecccccccccCC------cccccccccHHHHHH--HHHHHHHHHHhc
Confidence 458899999986 45678877 366533 4556554 889998544333
No 17
>PF14109 GldH_lipo: GldH lipoprotein
Probab=27.18 E-value=2.5e+02 Score=23.08 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=35.9
Q ss_pred cCCCceEEEEEEEEecCCcCCCcccCEEEEEEEeCCceeeEEEecc
Q 023485 150 LSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLVSGESQTRTVYLE 195 (281)
Q Consensus 150 LSp~t~Y~aylv~kl~~~~~G~~~~pv~~sv~~~g~~~~~~~V~L~ 195 (281)
.-..+.|.+|+.+.-++ .|-+.+..+.+.+..++|......+.+.
T Consensus 29 ~dt~~~Y~l~l~lR~~~-~Ypy~NL~l~v~~~~p~~~~~~dtl~~~ 73 (131)
T PF14109_consen 29 QDTTGPYNLYLNLRNNN-DYPYSNLWLIVELTDPDGKKVTDTLECE 73 (131)
T ss_pred cccCCeeEEEEEEEcCC-CCCcCCEEEEEEEEcCCCCEEeeeEEEE
Confidence 33568999999999987 7999999999999988777766555543
No 18
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=20.40 E-value=72 Score=29.93 Aligned_cols=42 Identities=29% Similarity=0.597 Sum_probs=28.9
Q ss_pred CceEEEEeeeEEe-----CCC-CCCcEEEEEE-EEEeCCcccceEEEEEEEE
Q 023485 231 DEWLEIELGDFFN-----EED-VEDGELEMSV-LELACGHWKCGLVIQGIEI 275 (281)
Q Consensus 231 DgW~EielGeF~~-----~~~-~~~~eV~fsl-~E~~~~~wK~GLiv~GIeI 275 (281)
|=|+...-|+|+. +|+ +-...+.||+ .++++|.|| ||+|++|
T Consensus 256 dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~k~g~wk---iVqgl~i 304 (332)
T KOG1496|consen 256 DWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTIKNGDWK---IVQGLPI 304 (332)
T ss_pred heecCCCCccEEEEeeecCCCCCCCCCeEEEcceEecCCceE---EEcCcch
Confidence 6677777777765 222 2233577888 778899998 7888876
Done!