Query 023485
Match_columns 281
No_of_seqs 165 out of 354
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 07:37:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 4.2E-09 1.5E-13 72.4 4.6 44 1-44 9-52 (53)
2 3l2o_B F-box only protein 4; s 98.5 3.6E-08 1.2E-12 91.3 3.6 76 1-76 5-94 (312)
3 2e31_A FBS1, F-box only protei 97.9 3.9E-06 1.3E-10 77.6 3.5 80 1-84 51-131 (297)
4 2ovr_B FBW7, F-BOX/WD repeat p 97.8 6.8E-06 2.3E-10 76.3 2.9 46 1-46 19-64 (445)
5 1p22_A F-BOX/WD-repeat protein 97.5 1.6E-05 5.4E-10 73.9 0.7 47 2-48 12-62 (435)
6 3v7d_B Cell division control p 97.5 1.9E-05 6.5E-10 73.2 1.2 44 2-45 16-60 (464)
7 2ast_B S-phase kinase-associat 96.8 0.00067 2.3E-08 60.8 3.7 44 1-44 9-52 (336)
8 2p1m_B Transport inhibitor res 94.9 0.016 5.3E-07 55.8 3.6 34 1-34 6-40 (594)
9 1dyo_A Endo-1,4-beta-xylanase 93.1 2 6.9E-05 35.1 12.8 97 148-281 63-159 (160)
10 3ogk_B Coronatine-insensitive 92.9 0.058 2E-06 51.8 3.5 33 3-35 15-48 (592)
11 4hfx_A Transcription elongatio 87.1 0.2 7E-06 38.6 1.4 64 4-76 13-76 (97)
12 2w5f_A Endo-1,4-beta-xylanase 48.6 1.4E+02 0.0046 29.0 11.3 92 147-278 77-169 (540)
13 3tes_A Tencon; fibronectin typ 29.4 65 0.0022 23.0 4.3 35 146-184 58-92 (98)
14 3qht_C Monobody YSMB-1; fibron 25.9 55 0.0019 23.1 3.3 33 147-179 62-94 (97)
15 3b83_A Ten-D3; beta sheet, com 25.4 87 0.003 22.2 4.3 32 148-183 60-91 (100)
16 3k2m_C Monobody HA4; engineere 23.6 84 0.0029 22.4 4.0 33 148-181 65-99 (101)
17 2lde_A Sarafotoxin-I3; endothe 22.6 16 0.00056 21.2 -0.2 10 106-115 17-26 (26)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.80 E-value=4.2e-09 Score=72.41 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=39.8
Q ss_pred CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccC
Q 023485 1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESF 44 (281)
Q Consensus 1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f 44 (281)
|.+||++++..|+++++|.|.+++++|||.|+.++.++.+|+.+
T Consensus 9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 57899999999999999999999999999999999999999864
No 2
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.53 E-value=3.6e-08 Score=91.27 Aligned_cols=76 Identities=22% Similarity=0.356 Sum_probs=60.9
Q ss_pred CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCCCc---cccccccCCCC-----CC------CCCc
Q 023485 1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDY---STLLSSSSSSS-----SL------RSSS 66 (281)
Q Consensus 1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~---~~i~~~~~~~~-----~~------~~~s 66 (281)
|++||.+++..|+||++|.|+||+|+||+.+|.+|+.+.+|+.||-.|+ .+|-..+.+.. +. .+..
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~~~ 84 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFFD 84 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----CCC
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccccc
Confidence 3579999999999999999999999999999999999999999998764 44555433210 00 1456
Q ss_pred HHHHHHhhcC
Q 023485 67 KKELYFSLCH 76 (281)
Q Consensus 67 kkely~~L~~ 76 (281)
++.+|.+-|.
T Consensus 85 ~~~~y~~~~p 94 (312)
T 3l2o_B 85 YMAVYRMCCP 94 (312)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHhcCh
Confidence 8999999983
No 3
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.94 E-value=3.9e-06 Score=77.58 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=60.1
Q ss_pred CCCchhHHHHHHHhcCChHhHH-HHhhhcHHHHHhhccchhhccCCCCCccccccccCCCCCCCCCcHHHHHHhhcCCCe
Q 023485 1 MELLPEGCIANAISFTTPRDAC-RLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLRSSSKKELYFSLCHNPI 79 (281)
Q Consensus 1 ~~~Lpe~ci~~ils~t~P~d~c-r~a~vs~~fr~aa~sd~vW~~flP~d~~~i~~~~~~~~~~~~~skkely~~L~~~pv 79 (281)
+..||++.+..||+++.|.+.+ |+++|||.+|..++++.+|++.|... .+...... +....+-|.+|+.---.-+
T Consensus 51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~--~~~~~~Wk~~y~~~~~gRN 126 (297)
T 2e31_A 51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSA--DEERDHWQQFYFLSKRRRN 126 (297)
T ss_dssp TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC-------CCSCHHHHHHHHHHCCC
T ss_pred hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Cccccccc--CCCCCChhhhheheecccc
Confidence 4689999999999999999999 99999999999999999999887765 11111111 1123568999987544566
Q ss_pred eecCC
Q 023485 80 LIDEG 84 (281)
Q Consensus 80 lld~g 84 (281)
||.|.
T Consensus 127 LL~NP 131 (297)
T 2e31_A 127 LLRNP 131 (297)
T ss_dssp CSSCS
T ss_pred eeecC
Confidence 77553
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.82 E-value=6.8e-06 Score=76.31 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=43.2
Q ss_pred CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCC
Q 023485 1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLP 46 (281)
Q Consensus 1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP 46 (281)
|..||++++..||+|++|.|.|++|+||+.|+.+++++.+|+.++-
T Consensus 19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 4689999999999999999999999999999999999999997764
No 5
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.53 E-value=1.6e-05 Score=73.87 Aligned_cols=47 Identities=15% Similarity=0.338 Sum_probs=43.2
Q ss_pred CCchhH----HHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCCC
Q 023485 2 ELLPEG----CIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPD 48 (281)
Q Consensus 2 ~~Lpe~----ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d 48 (281)
..||++ .+..|++|++|.|.|++|+||+.|+..++.+.+|..++-..
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 469999 99999999999999999999999999999999999876543
No 6
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.52 E-value=1.9e-05 Score=73.20 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=41.3
Q ss_pred CCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhcc-chhhccCC
Q 023485 2 ELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAES-DAVWESFL 45 (281)
Q Consensus 2 ~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~s-d~vW~~fl 45 (281)
..||++.+..|++|++|.|.|++++||+.++.++++ +.+|..++
T Consensus 16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 469999999999999999999999999999999987 89998876
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.82 E-value=0.00067 Score=60.77 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=39.7
Q ss_pred CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccC
Q 023485 1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESF 44 (281)
Q Consensus 1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f 44 (281)
+++||++++..|+++++++|.+++++||+.++.++.+-..|...
T Consensus 9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 57899999999999999999999999999999998777778643
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.85 E-value=0.016 Score=55.76 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=29.4
Q ss_pred CCCchhHHHHHHHhcCC-hHhHHHHhhhcHHHHHh
Q 023485 1 MELLPEGCIANAISFTT-PRDACRLSSVSAIFKLA 34 (281)
Q Consensus 1 ~~~Lpe~ci~~ils~t~-P~d~cr~a~vs~~fr~a 34 (281)
+++||++++..|++|++ ++|++++|+||+.++.+
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 46899999999999999 99999999999999988
No 9
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=93.09 E-value=2 Score=35.12 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=58.4
Q ss_pred cccCCCceEEEEEEEEecCCcCCCcccCEEEEEEEeCCceeeEEEeccccccccccccccccCCCCCCCCCCCCCCCCcc
Q 023485 148 RSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLVSGESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPK 227 (281)
Q Consensus 148 ~~LSp~t~Y~aylv~kl~~~~~G~~~~pv~~sv~~~g~~~~~~~V~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 227 (281)
..|.||++|.+..-+|+.+.. ....+.+++...+.....+...+... .
T Consensus 63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~~y~~i~~~-----------------------------~ 110 (160)
T 1dyo_A 63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQRYDTIDMK-----------------------------T 110 (160)
T ss_dssp TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCEEEEEEEEE-----------------------------E
T ss_pred hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCEEEEEEeeE-----------------------------E
Confidence 468999999999999997732 22334444444232222222222210 1
Q ss_pred ccCCceEEEEeeeEEeCCCCCCcEEEEEEEEEeCCcccceEEEEEEEEEecCCC
Q 023485 228 ERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKLGK 281 (281)
Q Consensus 228 ~R~DgW~EielGeF~~~~~~~~~eV~fsl~E~~~~~wK~GLiv~GIeIRPk~~~ 281 (281)
...++|.+++-|.|.... . ...+.|-+ |. ..-..=+.|+.|.|.|...|
T Consensus 111 ~~~~~W~~L~G~~ft~~~-~-~~~~~lyv-e~--~~~~~d~yiDdv~i~~~g~~ 159 (160)
T 1dyo_A 111 VGPNQWVHLYNPQYRIPS-D-ATDMYVYV-ET--ADDTINFYIDEAIGAVAGTV 159 (160)
T ss_dssp ECSSCCEEEEEEEEECCT-T-CEEEEEEE-EE--SSCCCCEEEEEEEEEETTCC
T ss_pred EcCCccEEEECcEEEeCC-C-CCEEEEEE-EC--CCCCccEEEEEEEEEeCccc
Confidence 125789999988999865 3 22444433 33 23455589999999998764
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=92.93 E-value=0.058 Score=51.78 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=31.2
Q ss_pred CchhHHHHHHHhcC-ChHhHHHHhhhcHHHHHhh
Q 023485 3 LLPEGCIANAISFT-TPRDACRLSSVSAIFKLAA 35 (281)
Q Consensus 3 ~Lpe~ci~~ils~t-~P~d~cr~a~vs~~fr~aa 35 (281)
+||++|+.+|++|+ +++|+++++.||+.|+.+.
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 69999999999999 8999999999999999873
No 11
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=87.11 E-value=0.2 Score=38.62 Aligned_cols=64 Identities=19% Similarity=0.373 Sum_probs=40.1
Q ss_pred chhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCCCccccccccCCCCCCCCCcHHHHHHhhcC
Q 023485 4 LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLRSSSKKELYFSLCH 76 (281)
Q Consensus 4 Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~~~i~~~~~~~~~~~~~skkely~~L~~ 76 (281)
.|-+.+.-||-..||....++-.-|+.+ +-++|-+|..|+-.||..-- +....|-+++|++|.+
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-------p~e~esWRelY~rl~~ 76 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-------PEEYESWREMYLRLQD 76 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-------CCSSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-------CCCCCCHHHHHHHHHH
Confidence 5778888899999999999999999966 67899999999999998422 2345799999999975
No 12
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=48.65 E-value=1.4e+02 Score=28.97 Aligned_cols=92 Identities=15% Similarity=0.237 Sum_probs=53.3
Q ss_pred ccccCCCceEEEEEEEEecCCcCCCcccCEEEEEEEeCC-ceeeEEEeccccccccccccccccCCCCCCCCCCCCCCCC
Q 023485 147 TRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLVSG-ESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYF 225 (281)
Q Consensus 147 t~~LSp~t~Y~aylv~kl~~~~~G~~~~pv~~sv~~~g~-~~~~~~V~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (281)
+..|.||++|....-+|. + |=...++.+++...++ .......++...
T Consensus 77 ~~~l~~G~~Y~fSawVk~-~---g~~~~~v~l~l~~~d~~~~~~~~~~i~~~---------------------------- 124 (540)
T 2w5f_A 77 GFYLDGGVEYKYSVFVKH-N---GTGTETFKLSVSYLDSETEEENKEVIATK---------------------------- 124 (540)
T ss_dssp TTTCCTTCEEEEEEEEEC-C---SSSEEEEEEEEEEEETTTCCEEEEEEEEE----------------------------
T ss_pred cceecCCCEEEEEEEEEe-C---CCCCceEEEEEEEecCCCCCceEEEeeEE----------------------------
Confidence 557899999999999985 3 2123455555543222 111121222110
Q ss_pred ccccCCceEEEEeeeEEeCCCCCCcEEEEEEEEEeCCcccceEEEEEEEEEec
Q 023485 226 PKERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPK 278 (281)
Q Consensus 226 P~~R~DgW~EielGeF~~~~~~~~~eV~fsl~E~~~~~wK~GLiv~GIeIRPk 278 (281)
....++|.+++ |.|.... . ...+++-+ |.. -..-+.|+.|.|.++
T Consensus 125 -~~~~g~Wt~L~-g~ft~p~-~-~~~~~lyv-e~~---~~~~f~vDdvsl~~~ 169 (540)
T 2w5f_A 125 -DVVAGEWTEIS-AKYKAPK-T-AVNITLSI-TTD---STVDFIFDDVTITRK 169 (540)
T ss_dssp -EEETTCCEEEE-EEEECCT-T-EEEEEEEE-EES---SCCCEEEEEEEEEEC
T ss_pred -EEeCCeeEEEE-eEEEecC-C-CeEEEEEE-EcC---CCCCEEEEEEEEecC
Confidence 11258999999 7998755 2 23455533 332 345688999988765
No 13
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=29.44 E-value=65 Score=22.98 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=24.2
Q ss_pred eccccCCCceEEEEEEEEecCCcCCCcccCEEEEEEEeC
Q 023485 146 STRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLVS 184 (281)
Q Consensus 146 ~t~~LSp~t~Y~aylv~kl~~~~~G~~~~pv~~sv~~~g 184 (281)
.-.-|.|+|.|.+.+.-.-.. | .+.|+...+..+|
T Consensus 58 ~l~gL~P~t~Y~~~V~A~~~~---g-~S~p~~~~~~~~~ 92 (98)
T 3tes_A 58 DLTGLKPGTEYTVSIYGVKGG---H-RSNPLSAEFTTGG 92 (98)
T ss_dssp EECSCCTTCEEEEEEEEEETT---E-EBCCEEEEEECSS
T ss_pred EECCCCCCCEEEEEEEEEeCC---c-ccCCEEEEEEcCc
Confidence 335689999999876554432 3 3488888888744
No 14
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=25.90 E-value=55 Score=23.13 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=19.4
Q ss_pred ccccCCCceEEEEEEEEecCCcCCCcccCEEEE
Q 023485 147 TRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVS 179 (281)
Q Consensus 147 t~~LSp~t~Y~aylv~kl~~~~~G~~~~pv~~s 179 (281)
-.-|.|+|.|.+.+.-.-..+..-....|+.+.
T Consensus 62 l~~L~p~t~Y~v~V~A~~~~G~gp~ss~p~~~~ 94 (97)
T 3qht_C 62 ISGLSPGVDYTITVYAYYSYYDLYYSYSPSSIN 94 (97)
T ss_dssp ECSCCTTCEEEEEEEEEEEETTEEEECSCEEEE
T ss_pred eCCCCCCCEEEEEEEEEeCCccCCCCCCCEEEe
Confidence 356999999988766544432211233565543
No 15
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=25.38 E-value=87 Score=22.20 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=22.5
Q ss_pred cccCCCceEEEEEEEEecCCcCCCcccCEEEEEEEe
Q 023485 148 RSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLV 183 (281)
Q Consensus 148 ~~LSp~t~Y~aylv~kl~~~~~G~~~~pv~~sv~~~ 183 (281)
.-|.|+|.|.+.+.-.-.. |.. .|+..+..+.
T Consensus 60 ~~L~p~t~Y~~~V~A~n~~---g~s-~p~~~~~~~~ 91 (100)
T 3b83_A 60 TNLEPNTTYEIRIVARNGQ---QYS-PPVSTTFTTG 91 (100)
T ss_dssp CSCCTTCEEEEEEEEEETT---EEC-CCEEEEEECC
T ss_pred CCCCCCCEEEEEEEEEeCC---CCC-CCEEEEEEEE
Confidence 4699999999877654433 654 7777776664
No 16
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A
Probab=23.56 E-value=84 Score=22.39 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=21.0
Q ss_pred cccCCCceEEEEEEEEecCCcCCC--cccCEEEEEE
Q 023485 148 RSLSPGTLYTAYLVYKLTAGSFGF--EYQPVVVSVG 181 (281)
Q Consensus 148 ~~LSp~t~Y~aylv~kl~~~~~G~--~~~pv~~sv~ 181 (281)
.-|.|+|.|.+.+.-.-.+ ..|+ +..|+.+.++
T Consensus 65 ~~L~p~t~Y~~~V~A~~~~-~~~~~~~s~p~~~~~~ 99 (101)
T 3k2m_C 65 SGLSPGVDYTITVYAWGED-SAGYMFMYSPISINYR 99 (101)
T ss_dssp CSCCTTCEEEEEEEEEEEC-TTSCEEECBCEEEEEE
T ss_pred CCCCCCCEEEEEEEEEeCC-ccceeecCCCEEEEee
Confidence 5699999999876555443 2221 2477776654
No 17
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=22.56 E-value=16 Score=21.16 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=6.5
Q ss_pred ceeeecCCCC
Q 023485 106 LLIVWGNTPT 115 (281)
Q Consensus 106 L~ItWgd~~~ 115 (281)
|.|+|.++|+
T Consensus 17 lDiIWvntp~ 26 (26)
T 2lde_A 17 KDVIWVNRNX 26 (26)
T ss_dssp TTCSTTTCC-
T ss_pred ccEEEecCCC
Confidence 5677777764
Done!