BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023487
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8WGS4|TLCD2_DANRE TLC domain-containing protein 2 OS=Danio rerio GN=tlcd2 PE=2 SV=1
Length = 246
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 86/154 (55%), Gaps = 17/154 (11%)
Query: 70 NTSVSLLHSTITSV-SVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAY 128
N S S +HS IT V SV+ ++ + +L+ + ++++ + S GYF Y
Sbjct: 42 NISTSFVHSLITGVWSVLCFCMHPQMA---------EDLIETHSVFSHALVSVSIGYFIY 92
Query: 129 DQWDML--QYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVR 186
D DM+ Q ++S +L HH++++ CF +++ + + ++ L+ E++S+FLH+R
Sbjct: 93 DFLDMVINQKIIHSW---ELLFHHVVVITCFGISVLTCRYVGFAVVALLVEINSVFLHLR 149
Query: 187 KVRRMAGIRDSKSRIVRVEWVLNWITFFLARIAS 220
+V RMA + +KS RV ++N T+ + RI +
Sbjct: 150 QVLRMANL--AKSTFYRVNSMINLGTYVVFRINT 181
>sp|Q96CP7|TLCD1_HUMAN TLC domain-containing protein 1 OS=Homo sapiens GN=TLCD1 PE=2 SV=1
Length = 247
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 108 VGSAW-LWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPG---ILVHHLLLLVCFTLALYR 163
+ +AW L Y +CFS GYF +D D++ SG LVHH++ + F ++
Sbjct: 76 IETAWSLSGYLLVCFSAGYFIHDTVDIVA----SGQTRASWEYLVHHVMAMGAFFSGIFW 131
Query: 164 NVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLL 223
+ + +LTL+ E+ +IFL +R + +++ +D + RV +N + +FL R+A
Sbjct: 132 SSFVGGGVLTLLVEVSNIFLTIRMMMKISNAQDHL--LYRVNKYVNLVMYFLFRLAPQAY 189
Query: 224 ITIKLIRDASKFEKG 238
+T +R ++ G
Sbjct: 190 LTHFFLRYVNQRTLG 204
>sp|Q5U2T1|TLCD1_RAT TLC domain-containing protein 1 OS=Rattus norvegicus GN=Tlcd1 PE=2
SV=1
Length = 247
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 108 VGSAW-LWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVT 166
+ +AW + Y +CFS GYF +D D++ R LVHH++ + F ++
Sbjct: 76 IETAWSVCGYLLVCFSAGYFIHDTVDIVVSRQTRASW-EYLVHHVMAMGAFFSGIFWKRF 134
Query: 167 INYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITI 226
+ +LTL+ E+ +IFL +R + ++ +D + +V +N + +FL R+A +T
Sbjct: 135 VGGGVLTLLVEVSNIFLTLRMMMKINNAQDIL--LYKVNKYVNLVMYFLFRLAPQAYLTK 192
Query: 227 KLIRDASKFEKGIELPLALFGMAGMNLLNISLGIDLFNAFKREKNPQQTSYHRRK 281
++ A + G F ++ + +L++ + I + + P++ ++K
Sbjct: 193 FFLQYAGQRTLGT------FLLSILLMLDVMILIYFSRLLRSDFCPERAPSRQQK 241
>sp|Q8VC26|TLCD2_MOUSE TLC domain-containing protein 2 OS=Mus musculus GN=Tlcd2 PE=2 SV=1
Length = 310
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 16/147 (10%)
Query: 43 FIVAGACF--FQIANWVIRLLVS----RDP-LFVNTSVSLLHSTITSVSVVFIVVNQWLR 95
+VAGA F F+ +W ++LL + RD ++ N VSL+HS ++ V + + Q+ +
Sbjct: 6 LLVAGASFTAFRGLHWGLQLLPTPKSVRDRWMWRNIFVSLIHSLLSGVGA-LVGLWQFPQ 64
Query: 96 NGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLV 155
+ + +H WA + S GYFA D DML + + +L HHL ++
Sbjct: 65 MVTDPINDHPP-------WARVLVAVSVGYFAADGVDMLWNQTLAQAW-DLLCHHLAVVS 116
Query: 156 CFTLALYRNVTINYLILTLICELHSIF 182
C + A+ + + +++L+ EL+SI
Sbjct: 117 CLSTAVVSGHYVGFSMVSLLLELNSIC 143
>sp|Q99JT6|TLCD1_MOUSE TLC domain-containing protein 1 OS=Mus musculus GN=Tlcd1 PE=2 SV=1
Length = 247
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 115 AYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTL 174
Y +CFS GYF +D D++ + LVHH++ + F ++ + +LTL
Sbjct: 84 GYLLVCFSAGYFIHDTVDIVVSKQTRASW-EYLVHHVMAMGAFFSGIFWKRFVGGGVLTL 142
Query: 175 ICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASK 234
+ E+ +IFL +R + ++ +D + +V +N + +FL R+A +T ++ A +
Sbjct: 143 LVEVSNIFLTLRMMMKINNAQDLL--LYKVNKYINLVMYFLFRLAPQAYLTKFFLQYAGQ 200
Query: 235 FEKG 238
G
Sbjct: 201 RTLG 204
>sp|A6NGC4|TLCD2_HUMAN TLC domain-containing protein 2 OS=Homo sapiens GN=TLCD2 PE=2 SV=3
Length = 264
Score = 37.7 bits (86), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 114/254 (44%), Gaps = 32/254 (12%)
Query: 43 FIVAGACF--FQIANWVIRLLVSRDPL------FVNTSVSLLHSTITSVSVVFIVVNQWL 94
+VAGA F F+ +W +R L + + + N VSL HS ++ + ++ +
Sbjct: 6 LLVAGASFLAFRGLHWGLRRLPTPESAARDRWQWWNLCVSLAHSLLSGTGA-LLGLSLYP 64
Query: 95 RNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLL 154
+ + + H WA + S GYF D D+L + G +L HHL+++
Sbjct: 65 QMAADPIHGHPR-------WALVLVAVSVGYFLADGADLL-WNQTLGKTWDLLCHHLVVV 116
Query: 155 VCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFF 214
C + A+ + + +++L+ EL+S LH+RK+ ++ R + S V + T
Sbjct: 117 SCLSTAVLSGHYVGFSMVSLLLELNSACLHLRKLLLLS--RQAPSLAFSVTSWASLATLA 174
Query: 215 LARIASHLLITIKLIRDASKFEKGIELPLALFGMAGMNLLNIS-----LGIDLF--NAFK 267
L R+ +++ L F + ++PLAL + G+ L+ + LGI + + +
Sbjct: 175 LFRLVPLGWMSLWL------FRQHHQVPLALVTLGGIGLVTVGIMSIILGIRILVNDVLQ 228
Query: 268 REKNPQQTSYHRRK 281
+P + + +
Sbjct: 229 SRPHPPSPGHEKTR 242
>sp|A4YIM8|RPON_METS5 DNA-directed RNA polymerase subunit N OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=rpoN PE=3 SV=1
Length = 66
Score = 34.3 bits (77), Expect = 1.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 117 PALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHL 151
P CF+CG D+WD R+ +G PG ++ L
Sbjct: 4 PVRCFTCGSLIADKWDAFSTRVRAGEDPGKVLDDL 38
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.142 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,758,397
Number of Sequences: 539616
Number of extensions: 3681579
Number of successful extensions: 9743
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9729
Number of HSP's gapped (non-prelim): 14
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)