Query 023487
Match_columns 281
No_of_seqs 164 out of 385
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:25:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4474 Uncharacterized conser 100.0 1.7E-37 3.7E-42 276.2 13.7 245 12-281 2-250 (253)
2 KOG4561 Uncharacterized conser 100.0 2.8E-38 6E-43 286.8 3.9 255 6-279 9-276 (281)
3 PF03798 TRAM_LAG1_CLN8: TLC d 100.0 2.3E-32 5E-37 235.4 19.0 194 67-264 1-198 (198)
4 smart00724 TLC TRAM, LAG1 and 100.0 3.9E-32 8.4E-37 237.4 18.2 197 64-270 2-204 (205)
5 KOG1607 Protein transporter of 97.9 0.0002 4.3E-09 67.0 12.7 198 66-271 87-290 (318)
6 COG5058 LAG1 Protein transport 96.9 0.0062 1.3E-07 57.0 9.6 196 67-271 156-368 (395)
7 KOG4650 Predicted steroid redu 59.4 21 0.00045 32.8 5.3 50 4-54 207-264 (311)
8 PF14018 DUF4234: Domain of un 52.0 88 0.0019 22.6 7.5 47 220-266 14-68 (75)
9 PRK14749 hypothetical protein; 30.0 89 0.0019 19.2 3.1 19 242-260 7-25 (30)
10 KOG4050 Glutamate transporter 25.9 4.1E+02 0.0089 22.9 7.5 14 64-77 38-52 (188)
11 COG3311 AlpA Predicted transcr 25.4 50 0.0011 24.3 1.7 27 176-204 7-33 (70)
12 TIGR02106 cyd_oper_ybgT cyd op 20.5 1.7E+02 0.0036 18.0 3.0 19 242-260 7-25 (30)
No 1
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-37 Score=276.24 Aligned_cols=245 Identities=30% Similarity=0.441 Sum_probs=202.7
Q ss_pred CccchhhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhccC--CCCCceehhhHHHHHHHHHHHHHHHH
Q 023487 12 NKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVS--RDPLFVNTSVSLLHSTITSVSVVFIV 89 (281)
Q Consensus 12 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~v~~S~~~f~~~~~~v~~l~~--k~~~W~nr~VS~vHAiv~~~~al~~l 89 (281)
|..++.+..+.++|..++.......+ ++....-++ +++ |+.+|.|+.||++||++++.++.+++
T Consensus 2 ~~~~~~~~~~~l~r~~~i~~~~~~~~-------------w~~~f~~~~-~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l 67 (253)
T KOG4474|consen 2 NRLLQPFVSFLLLRILSIVVYSALFG-------------WGLIFFDVR-WFSVYQKKRFSNLTVSLLHSTISGLWALLSL 67 (253)
T ss_pred CchhHhHHHHHHHhhhhhhHHHHHhh-------------cceeeeeeE-eeccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44556677777888877777655443 111111111 233 56699999999999999999997443
Q ss_pred HhhhhccCCCCCcccCCcccCCcchhhhhHHHHHHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHhhcccchhh
Q 023487 90 VNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINY 169 (281)
Q Consensus 90 ~~~~~~~~~~~~~~~~d~v~~~s~~~~~~~~iS~GYFl~Dl~~~l~~~~~~~~~~~~l~HH~~~l~~f~~~l~~~~~~~~ 169 (281)
. .+| +++ .|++..+++.+..++++|+|||+||++||..++... ..+|+++||++++.||..+++++++.++
T Consensus 68 ~---~~~---~~~--~~~~~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~-~s~e~LvHH~v~i~aF~~~lf~~~~~~~ 138 (253)
T KOG4474|consen 68 L---YDP---EMV--DDPITYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSE-LSWEYLVHHVVCIIAFVLGLFYSKFLGY 138 (253)
T ss_pred H---hCc---ccc--cCHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 343 454 788888899999999999999999999999998643 4789999999999999999999999999
Q ss_pred HHHHHHHhhcchhhhHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccccchhHHHHHHHH
Q 023487 170 LILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRDASKFEKGIELPLALFGMA 249 (281)
Q Consensus 170 ~~~~Ll~ElSTPFlnlR~~L~~~g~~~~~S~~y~vNg~l~~~tFf~~Ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 249 (281)
+.+.|++|+||||+|+|.+++++|.++ +++.++++..+|+++||++|+++..|++++++.+.+..++... +++..|+.
T Consensus 139 ~~~~llmEv~SiFLH~R~il~l~g~s~-~~~~~rv~v~lN~i~f~~fR~~~~~~l~~~~i~~~~~~~~~~~-~~~~gg~~ 216 (253)
T KOG4474|consen 139 VVAALLMEVSSIFLHLRSILKLAGLST-TLPSFRVVVYLNLITFFFFRLIPQIYLTYFLIANAPFLHWYLK-LFALGGLL 216 (253)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhCCCC-CCchhHHHHHHHHHHHHHHHhccceeEEEEEeeeCCCcceehh-HHHhhhHH
Confidence 999999999999999999999999975 4558999999999999999999999999999998888777764 57777899
Q ss_pred HHHHHHHHHHHHHHh--hhccccCCCccccccCC
Q 023487 250 GMNLLNISLGIDLFN--AFKREKNPQQTSYHRRK 281 (281)
Q Consensus 250 ~l~vLNi~wF~ki~~--g~~k~~~~~~~~~~~~~ 281 (281)
.++++|+.++.|+++ |+..+..|+|....+||
T Consensus 217 ~l~~~n~~l~~rll~sdgf~~~~r~~~~~~~~~~ 250 (253)
T KOG4474|consen 217 CLAVINTVLTLRLLASDGFLGSHRQAREDANLDE 250 (253)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHhcCcccccc
Confidence 999999999999999 67777778877776665
No 2
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.8e-38 Score=286.77 Aligned_cols=255 Identities=19% Similarity=0.111 Sum_probs=183.4
Q ss_pred ccCCCCCccchhhhhHHHHHHHHHHHHHHhccchhHHH---HHHHHHHHHHHHHHHhhccCCCC-Cce-ehhhHHHHHHH
Q 023487 6 TKQSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLF---IVAGACFFQIANWVIRLLVSRDP-LFV-NTSVSLLHSTI 80 (281)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~---v~~S~~~f~~~~~~v~~l~~k~~-~W~-nr~VS~vHAiv 80 (281)
+.+++....-.+..+....-+.+.+.|++++...+... -..|....+.+ ..+.+|.+ ||| +|+||++||++
T Consensus 9 ~~~~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~----~~l~~k~~i~wn~~~~Vs~~hslv 84 (281)
T KOG4561|consen 9 RIGLTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTY----RSLDKKLKIEWNCVRVVSTVHSLV 84 (281)
T ss_pred cccccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhH----hhhcCcEEEEEecCceeeeehHhh
Confidence 34444444444667788899999999999887776655 11111111111 12234444 999 99999999999
Q ss_pred HHHHHHHHHH-hhhhccCCCCCcccCCcccCCcchhhhhHHHH--HHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHH
Q 023487 81 TSVSVVFIVV-NQWLRNGLNGMFEHSELVGSAWLWAYPALCFS--CGYFAYDQWDMLQYRLYSGLIPGILVHHLLLLVCF 157 (281)
Q Consensus 81 ~~~~al~~l~-~~~~~~~~~~~~~~~d~v~~~s~~~~~~~~iS--~GYFl~Dl~~~l~~~~~~~~~~~~l~HH~~~l~~f 157 (281)
++ +++.+. .+.+ +.|...+++......-.-+ .|||+.|+..+.++....+ |+++++||+++++..
T Consensus 85 ~~--s~y~lf~~~~f---------~yD~~~~~~~~~~~~~~~~~g~gy~i~dl~~i~~~~~~~~-~~~fviHh~~s~~~v 152 (281)
T KOG4561|consen 85 SS--SLYFLFGTPYF---------HYDKATGYSVVWSKHRDTSVGIGYFIPDLTWIIVRYFVLG-GIEFVIHHIASLVFV 152 (281)
T ss_pred hc--ccceeecCccc---------chhhhhccceeecceeeccccceEecccceeEEEEeeeec-CeeEEeeHHHHhhhh
Confidence 87 442222 1211 3444444433333332333 4499999975555444445 899999999885555
Q ss_pred HHHhhcccchhhHHHHHHHhhcchhhhHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----cc
Q 023487 158 TLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIR-----DA 232 (281)
Q Consensus 158 ~~~l~~~~~~~~~~~~Ll~ElSTPFlnlR~~L~~~g~~~~~S~~y~vNg~l~~~tFf~~Ri~~~~~~~~~~~~-----~~ 232 (281)
...+.++.+++|+...|++|+||||+|+||+++++|+ |+|++|++||++++++|++|||+..+++.+.++. +.
T Consensus 153 ~~~~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~--k~Sl~~~vNG~lm~~~F~v~RIll~~~~~~~~~~~~~~~~~ 230 (281)
T KOG4561|consen 153 GCLLRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQ--KKSLFYKVNGLLLLVVFFVARILLWPYMGWHYYWRYQGLVL 230 (281)
T ss_pred eeeEecCccceeeeeeheeecCCceeeHHHHHHHcCc--ccchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5555677889999999999999999999999999999 7899999999999999999999988888766662 23
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCcccccc
Q 023487 233 SKFEKGIELPLALFGMAGMNLLNISLGIDLFNAFKREKNPQQTSYHR 279 (281)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~l~vLNi~wF~ki~~g~~k~~~~~~~~~~~ 279 (281)
.++|...+ .....+++.+++||++||+||.||++|..+++|++-..
T Consensus 231 ~~~~~~~~-~~~l~~~~~L~v~Nl~Wf~km~~ga~K~~~~~~~~~~~ 276 (281)
T KOG4561|consen 231 NQVPPFLP-LFLLGLNALLLVLNLYWFSKMVRGALKVLKKAKTSPPA 276 (281)
T ss_pred hhhchhHh-HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcccCCChh
Confidence 45666554 25556799999999999999999999999999887543
No 3
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=2.3e-32 Score=235.44 Aligned_cols=194 Identities=24% Similarity=0.251 Sum_probs=154.0
Q ss_pred CceehhhHHHHHHHHHHHHHHHHHhhhhccCCCCCcccCCcccCCcchhhhhHHHHHHHHHHHHHHHHhhhhccCcchhH
Q 023487 67 LFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIPGI 146 (281)
Q Consensus 67 ~W~nr~VS~vHAiv~~~~al~~l~~~~~~~~~~~~~~~~d~v~~~s~~~~~~~~iS~GYFl~Dl~~~l~~~~~~~~~~~~ 146 (281)
||+||++|++|+++++.++++++.. +|+..+.. ++++..++++..+...++++|||++|+++|+.+++..+..+++
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~ 76 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLN---DPELWSDW-PDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEM 76 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhc---CcHHhhhc-ccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHh
Confidence 7999999999999999999865554 22111111 2444455566777899999999999999999976554323799
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcchhhhHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 023487 147 LVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITI 226 (281)
Q Consensus 147 l~HH~~~l~~f~~~l~~~~~~~~~~~~Ll~ElSTPFlnlR~~L~~~g~~~~~S~~y~vNg~l~~~tFf~~Ri~~~~~~~~ 226 (281)
++||++++.++..+...+.+..++...+++|+||||+|+||+++..|.+.++++.+.+|++++.++|+++|++.+|+..+
T Consensus 77 ~~HH~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~ 156 (198)
T PF03798_consen 77 LLHHVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYLIY 156 (198)
T ss_pred hHHHHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887888888899999999999999999999994311367899999999999999999999999888
Q ss_pred HHHhcccccccc---ch-hHHHHHHHHHHHHHHHHHHHHHHh
Q 023487 227 KLIRDASKFEKG---IE-LPLALFGMAGMNLLNISLGIDLFN 264 (281)
Q Consensus 227 ~~~~~~~~~~~~---~~-~~l~~~~~~~l~vLNi~wF~ki~~ 264 (281)
+.+.+..+.+.. .+ ......++.++++||++||+||+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r 198 (198)
T PF03798_consen 157 WVYWDVWPLPLWKVPWPVPWIFLVLLLVLFVLNIYWFYLILR 198 (198)
T ss_pred HHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888865432221 11 124445578889999999999987
No 4
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=100.00 E-value=3.9e-32 Score=237.36 Aligned_cols=197 Identities=26% Similarity=0.300 Sum_probs=161.5
Q ss_pred CCCCceehhhHHHHHHHHHHHHHHHHHhhhhccCCCCCcccCCcccCCcchhhhhHHHHHHHHHHHHHHHHhhhhcc-Cc
Q 023487 64 RDPLFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYS-GL 142 (281)
Q Consensus 64 k~~~W~nr~VS~vHAiv~~~~al~~l~~~~~~~~~~~~~~~~d~v~~~s~~~~~~~~iS~GYFl~Dl~~~l~~~~~~-~~ 142 (281)
|+.||+||+||.+||++++..++... ++..+ +. .+++....++.++...++++|||++|+.+|+.+++.. ..
T Consensus 2 k~~e~~~~~vs~~hs~~~~~~~~~~~--~~~~~---~~--~~~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d 74 (205)
T smart00724 2 KFNESSNRLVSYLHSVIAGLYALYSE--PWLSD---PK--SLYPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKD 74 (205)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhccC--CcccC---Cc--ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 45599999999999999998776321 11111 11 2567788899999999999999999999999654322 22
Q ss_pred chhHHHHHHHHHHHHHHHhhcccchhhHHHHHHHhhcchhhhHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHhhHH
Q 023487 143 IPGILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHL 222 (281)
Q Consensus 143 ~~~~l~HH~~~l~~f~~~l~~~~~~~~~~~~Ll~ElSTPFlnlR~~L~~~g~~~~~S~~y~vNg~l~~~tFf~~Ri~~~~ 222 (281)
++++++||++++.++..+...+....++...++.|+||||+|+||+++.+|+ ++++++.+|+++++++|+++|++.+|
T Consensus 75 ~~~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~--~~~~~~~~~~~~f~~~f~~~R~~~~p 152 (205)
T smart00724 75 FKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGR--KKSLLYDVNFVLFAVVFFVFRLILFP 152 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhcc--ccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999888888888888888999999999999999999998 67899999999999999999999999
Q ss_pred HHHHHHHhccccccc-----cchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 023487 223 LITIKLIRDASKFEK-----GIELPLALFGMAGMNLLNISLGIDLFNAFKREK 270 (281)
Q Consensus 223 ~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~l~vLNi~wF~ki~~g~~k~~ 270 (281)
++.++.+.+..+... .. .......+.++.+||++||++|+|+..|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~ 204 (205)
T smart00724 153 FLILTVTVHYAQAESGLFPPLL-YLLFLLLLLCLQLLNIYWFFLILRMARKLL 204 (205)
T ss_pred HHHHHHHhhhhhhhcCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998887554322 21 134455689999999999999999988764
No 5
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0002 Score=67.00 Aligned_cols=198 Identities=11% Similarity=0.138 Sum_probs=116.2
Q ss_pred CCceehhhHHHHHHHHHHHHHHHHHh-hhhccCCCCCcccCCcccCCcchhhhhHHHHHHHHHHHHHHHHhhhhccCcch
Q 023487 66 PLFVNTSVSLLHSTITSVSVVFIVVN-QWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQYRLYSGLIP 144 (281)
Q Consensus 66 ~~W~nr~VS~vHAiv~~~~al~~l~~-~~~~~~~~~~~~~~d~v~~~s~~~~~~~~iS~GYFl~Dl~~~l~~~~~~~~~~ 144 (281)
+..+...=..+-=.++...+++++++ +|+.+. ..++ .+-|.....+.-...-.+=+|+-++-+..+..-...+- -+
T Consensus 87 ~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~-k~~w-~~yP~~~~~~~~k~~Y~~e~gfY~~~l~al~~d~~rkD-f~ 163 (318)
T KOG1607|consen 87 KKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDT-KSFW-EGYPDQTLPPSFKAYYLLEAGFYIQLLFALFLDEKRKD-FW 163 (318)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhheecchhhcCH-HHHH-hcCCCCCCCHHHHHHHHHhhHHHHHHHHHHHhhccccH-HH
Confidence 35555555666667777777766665 555431 1232 12233333344444455667777776666654332222 36
Q ss_pred hHHHHHHHHHHHHHHHhhcccchhhHHHH-HHHhhcchhhhHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHhhHHH
Q 023487 145 GILVHHLLLLVCFTLALYRNVTINYLILT-LICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLL 223 (281)
Q Consensus 145 ~~l~HH~~~l~~f~~~l~~~~~~~~~~~~-Ll~ElSTPFlnlR~~L~~~g~~~~~S~~y~vNg~l~~~tFf~~Ri~~~~~ 223 (281)
++++||++.+.-...+-.. .+.-.+... .+...|-+|+-..+.++-.+. + .+-...=+++...|+..|+...|.
T Consensus 164 ~m~vHHvvTl~Li~lSy~~-~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~--~--~~~~~~F~~F~~~wi~~RL~~~p~ 238 (318)
T KOG1607|consen 164 EMVVHHVVTLILISLSYVF-NFTRVGTLILALHDASDVFLELGKMLNYLQF--E--AIADFVFVLFAFSWIYTRLIYYPF 238 (318)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhcccceeeeeecchHHHHHHHHHHchhhH--H--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998876654444322 222222222 347899999999988877765 2 233344457788899999887765
Q ss_pred HHHHHHh--c--cccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 023487 224 ITIKLIR--D--ASKFEKGIELPLALFGMAGMNLLNISLGIDLFNAFKREKN 271 (281)
Q Consensus 224 ~~~~~~~--~--~~~~~~~~~~~l~~~~~~~l~vLNi~wF~ki~~g~~k~~~ 271 (281)
...+... + ..+.+..+.+++......++.+||++|++-|+|-..|..+
T Consensus 239 wil~st~~~~~~~~~~~~~~~~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~ 290 (318)
T KOG1607|consen 239 WILRSTSREDFSLRQYQPKPSYYFFNCLLLALQLLHIYWFYLILRMAYRVIK 290 (318)
T ss_pred HHHHHhHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4333222 1 1121222212344445788999999999999997766666
No 6
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=96.93 E-value=0.0062 Score=57.00 Aligned_cols=196 Identities=12% Similarity=0.148 Sum_probs=101.2
Q ss_pred CceehhhHHHHHHHHHHHHHHHHHh--hhhccCCCCCcccCCcccCCcchhhhhHHHHHHHHHHHHHHHHhh--hhccCc
Q 023487 67 LFVNTSVSLLHSTITSVSVVFIVVN--QWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYFAYDQWDMLQY--RLYSGL 142 (281)
Q Consensus 67 ~W~nr~VS~vHAiv~~~~al~~l~~--~~~~~~~~~~~~~~d~v~~~s~~~~~~~~iS~GYFl~Dl~~~l~~--~~~~~~ 142 (281)
.++...-+...-.+++..+++++.+ .|+-+. ..++ .+-|+.+.++.-..---+=.||-+-.....+.. ++..-
T Consensus 156 Rf~eq~y~~fyy~v~g~~Glyvmrss~~w~fnt-k~l~-etyp~~~~p~lfk~fYliqaafw~qQa~ilvLqlEkprkD- 232 (395)
T COG5058 156 RFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNT-KALY-ETYPVFYNPFLFKAFYLIQAAFWAQQACILVLQLEKPRKD- 232 (395)
T ss_pred HHHHHHHHHHHhhccccceEEEEecCcchhhhh-HHHH-HhCccccCcHHHHHHHHHHHHHHHHHHhhheeeecchhhh-
Confidence 5666666666666666666644332 222110 1121 122333433333333334455555543332221 22222
Q ss_pred chhHHHHHHHHHHHHHHHhhcccchhhHH-HHHHHhhcchhhhHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHhhH
Q 023487 143 IPGILVHHLLLLVCFTLALYRNVTINYLI-LTLICELHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASH 221 (281)
Q Consensus 143 ~~~~l~HH~~~l~~f~~~l~~~~~~~~~~-~~Ll~ElSTPFlnlR~~L~~~g~~~~~S~~y~vNg~l~~~tFf~~Ri~~~ 221 (281)
-+|++.||++.+.-...+-..... --++ ....+.+|-||+.+.+.+.-+|- +..+-+-| .+...|+-.|-.+.
T Consensus 233 ~~elv~HHIVTllLI~lSY~fhft-r~GlAI~itmDvSD~~Ls~sK~lnYl~~----~l~~~iF~-iFv~~wIysRHyln 306 (395)
T COG5058 233 FKELVFHHIVTLLLIWLSYVFHFT-RMGLAIYITMDVSDFFLSLSKTLNYLNS----VLATFIFG-IFVFIWIYSRHYLN 306 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hccceEEEEEeccHHHHHHHHHHHHhhc----hhHHHHHH-HHHHHHHHHHHHHH
Confidence 368999998876554443321111 1111 12348999999999999988873 34454444 45666777773332
Q ss_pred HHHHHHHHhcc---ccccc---------cchhHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 023487 222 LLITIKLIRDA---SKFEK---------GIELPLALFGMAGMNLLNISLGIDLFNAFKREKN 271 (281)
Q Consensus 222 ~~~~~~~~~~~---~~~~~---------~~~~~l~~~~~~~l~vLNi~wF~ki~~g~~k~~~ 271 (281)
.=+.+-+.... .+++. -+.+++.++...++..+|++|+.-|+|-.+|...
T Consensus 307 ~kIlw~vlt~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayRv~~ 368 (395)
T COG5058 307 LKILWSVLTAFRTIGNFVLDVATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYRVIW 368 (395)
T ss_pred HHHHHHHHhchhhcCceeeEeechhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22212222211 11111 1112345556788999999999999996555443
No 7
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=59.43 E-value=21 Score=32.84 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=36.4
Q ss_pred ccccCCC-CCccchhh-------hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 023487 4 TSTKQSD-KNKVGVFF-------LATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIA 54 (281)
Q Consensus 4 ~~~~~~~-~~~~~~~~-------~~~~~~~~~s~~~~~~~~~~~~l~~v~~S~~~f~~~ 54 (281)
..+++|| .+|+|++. ++||++|..-+++|.......+ +++++..++-.++
T Consensus 207 ~l~~~Gk~~~d~GlwrySRHPNylgEqL~Wwglyvfa~~~~egl~-wtvi~~lv~~~~l 264 (311)
T KOG4650|consen 207 DLENLGKGWCDVGLWRYSRHPNYLGEQLLWWGLYVFAAPVLEGLE-WTVIAGLVFLTLL 264 (311)
T ss_pred CHHHcCCccccccceeeccCccHHHHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHH
Confidence 5678888 78899865 8999999999888877666655 6666655544333
No 8
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=52.04 E-value=88 Score=22.57 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcccccc--------ccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023487 220 SHLLITIKLIRDASKFE--------KGIELPLALFGMAGMNLLNISLGIDLFNAF 266 (281)
Q Consensus 220 ~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~l~vLNi~wF~ki~~g~ 266 (281)
.|.|..||+++..+++. ............++..+.+++|++|+-+-.
T Consensus 14 ~GIY~l~W~y~~~~~~~~~~~~~~~~~~~~~~lll~ilt~gi~~i~w~~k~~~~i 68 (75)
T PF14018_consen 14 CGIYGLYWLYKIWKELNQLTGRIISPRSMTLWLLLSILTCGIYSIYWAYKLGNRI 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777433221 111111223345678999999999998764
No 9
>PRK14749 hypothetical protein; Provisional
Probab=30.05 E-value=89 Score=19.16 Aligned_cols=19 Identities=11% Similarity=0.023 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023487 242 PLALFGMAGMNLLNISLGI 260 (281)
Q Consensus 242 ~l~~~~~~~l~vLNi~wF~ 260 (281)
.++......+.++|..|+=
T Consensus 7 iLG~~lAc~f~ilna~w~E 25 (30)
T PRK14749 7 FVGILLMCSLSTLVLVWLD 25 (30)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444446788999999985
No 10
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=25.90 E-value=4.1e+02 Score=22.94 Aligned_cols=14 Identities=29% Similarity=0.180 Sum_probs=11.3
Q ss_pred CCC-CceehhhHHHH
Q 023487 64 RDP-LFVNTSVSLLH 77 (281)
Q Consensus 64 k~~-~W~nr~VS~vH 77 (281)
+|. +||||++|.+-
T Consensus 38 ~D~~kW~nRVisNLL 52 (188)
T KOG4050|consen 38 NDFKKWNNRVISNLL 52 (188)
T ss_pred ccHHHHHHHHHHHHH
Confidence 555 89999999864
No 11
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=25.44 E-value=50 Score=24.33 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=22.7
Q ss_pred HhhcchhhhHHHHHHHhCCCCCCchHHHH
Q 023487 176 CELHSIFLHVRKVRRMAGIRDSKSRIVRV 204 (281)
Q Consensus 176 ~ElSTPFlnlR~~L~~~g~~~~~S~~y~v 204 (281)
++.+++++.++..+..+|+ ..+.+|+.
T Consensus 7 ~~~~~r~lrl~ev~~~~Gl--SrstiYr~ 33 (70)
T COG3311 7 MRHTDRLLRLPEVAQLTGL--SRSTIYRL 33 (70)
T ss_pred ccccchhhhHHHHHHHHCc--cHHHHHHH
Confidence 5678999999999999999 66777753
No 12
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=20.46 E-value=1.7e+02 Score=18.01 Aligned_cols=19 Identities=16% Similarity=0.004 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023487 242 PLALFGMAGMNLLNISLGI 260 (281)
Q Consensus 242 ~l~~~~~~~l~vLNi~wF~ 260 (281)
.++......+.++|..|+=
T Consensus 7 ilG~~lA~~~~v~~a~w~E 25 (30)
T TIGR02106 7 ILGTLLACAFGVLNAMWLE 25 (30)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444446788999999984
Done!