Query 023487
Match_columns 281
No_of_seqs 164 out of 385
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 07:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 13.8 3E+02 0.01 18.2 4.8 12 265-276 37-48 (54)
2 2k9p_A Pheromone alpha factor 6.3 3.8E+02 0.013 19.1 2.9 21 197-219 46-66 (80)
3 1iap_A Guanine nucleotide exch 6.2 4.7E+02 0.016 22.2 3.9 40 146-185 20-65 (211)
4 2das_A Zinc finger MYM-type pr 5.7 1.9E+02 0.0065 19.7 0.9 16 265-280 25-40 (62)
5 2l8s_A Integrin alpha-1; trans 4.1 9E+02 0.031 15.9 5.1 10 265-274 34-43 (54)
6 2ls4_A High affinity copper up 5.5 2E+02 0.0069 16.1 0.0 13 117-129 9-21 (26)
7 2zvv_Y Cyclin-dependent kinase 3.7 2.6E+02 0.0089 15.5 0.3 9 270-278 2-10 (26)
8 2zw3_A GAP junction beta-2 pro 3.3 8E+02 0.027 20.8 3.3 40 186-231 7-46 (226)
9 4ev6_A Magnesium transport pro 3.1 2.1E+03 0.073 18.5 6.7 58 202-260 273-334 (339)
10 3pbl_A D(3) dopamine receptor, 2.5 2.1E+03 0.071 18.6 5.4 14 218-231 412-425 (481)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.82 E-value=3e+02 Score=18.22 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=8.0
Q ss_pred hhccccCCCccc
Q 023487 265 AFKREKNPQQTS 276 (281)
Q Consensus 265 g~~k~~~~~~~~ 276 (281)
||-|+.++.+..
T Consensus 37 GFFkR~~~~~~e 48 (54)
T 2knc_A 37 GFFKRNRPPLEE 48 (54)
T ss_dssp HHTTTTCCSCCC
T ss_pred CcccCCCCCcch
Confidence 887777665544
No 2
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=6.32 E-value=3.8e+02 Score=19.07 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=15.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh
Q 023487 197 SKSRIVRVEWVLNWITFFLARIA 219 (281)
Q Consensus 197 ~~S~~y~vNg~l~~~tFf~~Ri~ 219 (281)
++|+++.+|...+++.. .|.+
T Consensus 46 rrspiF~lN~~~L~l~i--irs~ 66 (80)
T 2k9p_A 46 RKTPIFIINQVSLFLII--LHSA 66 (80)
T ss_dssp SCCCHHHHHHHHHHHHH--HHHH
T ss_pred ccChhhHHHHHHHHHHH--HHHH
Confidence 67899999999887654 4544
No 3
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=6.23 E-value=4.7e+02 Score=22.15 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=25.2
Q ss_pred HHHHHHHH------HHHHHHHhhcccchhhHHHHHHHhhcchhhhH
Q 023487 146 ILVHHLLL------LVCFTLALYRNVTINYLILTLICELHSIFLHV 185 (281)
Q Consensus 146 ~l~HH~~~------l~~f~~~l~~~~~~~~~~~~Ll~ElSTPFlnl 185 (281)
.++||+++ +.||.++=.++...+==.-....|+.|-|+--
T Consensus 20 VFL~yV~sq~DPspLLfYL~tdlYk~~~~Ke~rk~~~Ei~stFL~~ 65 (211)
T 1iap_A 20 ALLQHVALQFEPGPLLCCLHADMLGSLGPKEAKKAFLDFYHSFLEK 65 (211)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhccChHHHHHHHHHHHHHHhCC
Confidence 45777654 67777666555554434456677888877743
No 4
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=5.75 E-value=1.9e+02 Score=19.72 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.4
Q ss_pred hhccccCCCccccccC
Q 023487 265 AFKREKNPQQTSYHRR 280 (281)
Q Consensus 265 g~~k~~~~~~~~~~~~ 280 (281)
+++|.+.|-|+.++|.
T Consensus 25 ~CKk~lqKGQtAyqrk 40 (62)
T 2das_A 25 NCKKPLQKGQTAYQRK 40 (62)
T ss_dssp TTCCBCCTTSCCEECT
T ss_pred hccchhhcCceeeeec
Confidence 6889999999988874
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=4.14 E-value=9e+02 Score=15.85 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=6.5
Q ss_pred hhccccCCCc
Q 023487 265 AFKREKNPQQ 274 (281)
Q Consensus 265 g~~k~~~~~~ 274 (281)
||-|+.++.+
T Consensus 34 GFFKR~~~~~ 43 (54)
T 2l8s_A 34 GFFKRPLKKK 43 (54)
T ss_dssp HHTTSCCSCC
T ss_pred CcccCCCcch
Confidence 8777666544
No 6
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=5.53 E-value=2e+02 Score=16.15 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHH
Q 023487 117 PALCFSCGYFAYD 129 (281)
Q Consensus 117 ~~~~iS~GYFl~D 129 (281)
.+++-.+|||+++
T Consensus 9 vvlGa~~Gyf~F~ 21 (26)
T 2ls4_A 9 VAAGAGTGYFLFS 21 (26)
Confidence 3566778888874
No 7
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=3.73 E-value=2.6e+02 Score=15.52 Aligned_cols=9 Identities=33% Similarity=0.409 Sum_probs=6.1
Q ss_pred cCCCccccc
Q 023487 270 KNPQQTSYH 278 (281)
Q Consensus 270 ~~~~~~~~~ 278 (281)
++++|||++
T Consensus 2 rKrkQTs~T 10 (26)
T 2zvv_Y 2 RKRRQTSMT 10 (26)
T ss_pred Ccccccchh
Confidence 467788764
No 8
>2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane channel, two double layered lipid spanning, cellular adhesion, cell junction; 3.50A {Homo sapiens} PDB: 3iz1_A 3iz2_A
Probab=3.33 E-value=8e+02 Score=20.81 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Q 023487 186 RKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITIKLIRD 231 (281)
Q Consensus 186 R~~L~~~g~~~~~S~~y~vNg~l~~~tFf~~Ri~~~~~~~~~~~~~ 231 (281)
..+++..+. +|+.. |-.=+..+|++|+++..-..-.+|.|
T Consensus 7 ~~ll~~v~~---~ST~i---Gk~Wl~vlfifRilvl~~~ge~v~~D 46 (226)
T 2zw3_A 7 QTILGGVNK---HSTSI---GKIWLTVLFIFRIMILVVAAKEVWGD 46 (226)
T ss_dssp HHHHHSCSS---CCCSS---CHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHhcc---CCCch---hHHHHHHHHHHHHHHHHHhccccccc
Confidence 456666653 44433 55556667889999988887888874
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=3.09 E-value=2.1e+03 Score=18.46 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHh-cccccc---ccchhHHHHHHHHHHHHHHHHHHH
Q 023487 202 VRVEWVLNWITFFLARIASHLLITIKLIR-DASKFE---KGIELPLALFGMAGMNLLNISLGI 260 (281)
Q Consensus 202 y~vNg~l~~~tFf~~Ri~~~~~~~~~~~~-~~~~~~---~~~~~~l~~~~~~~l~vLNi~wF~ 260 (281)
.+.|.++-.+|-+..=.++...+ ..+|. +.+..| +...|+..+..|+++.+.=+.||.
T Consensus 273 ~~~N~~mk~LTiit~IflP~T~I-aGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~~fk 334 (339)
T 4ev6_A 273 IKMNQIMKILTMVTTIFAVPMWI-TGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFVYIFR 334 (339)
T ss_dssp HHHHHHHHHHHHHHHHSSHHHHH-HHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665544444443 33444 444333 222234444456666666566664
No 10
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=2.50 E-value=2.1e+03 Score=18.59 Aligned_cols=14 Identities=0% Similarity=0.066 Sum_probs=8.3
Q ss_pred HhhHHHHHHHHHhc
Q 023487 218 IASHLLITIKLIRD 231 (281)
Q Consensus 218 i~~~~~~~~~~~~~ 231 (281)
+.+.||....++..
T Consensus 412 icw~P~~i~~~~~~ 425 (481)
T 3pbl_A 412 VCWLPFFLTHVLNT 425 (481)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHh
Confidence 44667766666553
Done!