Query 023487
Match_columns 281
No_of_seqs 164 out of 385
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 07:39:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023487.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023487hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dasa1 g.39.1.17 (A:8-56) Zin 13.4 31 0.0023 20.9 1.0 17 264-280 17-33 (49)
2 d1iapa_ a.91.1.1 (A:) p115RhoG 6.1 2.5E+02 0.018 21.5 4.1 45 145-189 17-67 (190)
3 d1u19a_ f.13.1.2 (A:) Rhodopsi 3.3 8.4E+02 0.061 17.9 6.1 12 207-218 255-266 (348)
4 d1r6ra_ a.190.1.1 (A:) Flavivi 3.1 66 0.0048 21.5 -1.5 10 261-270 59-68 (80)
5 d1ppjg_ f.23.13.1 (G:) Ubiquin 2.4 4.3E+02 0.032 16.8 2.1 18 116-133 47-64 (75)
6 d1rp4a_ a.227.1.1 (A:) Endopla 2.1 4E+02 0.029 22.3 2.0 23 172-194 277-299 (374)
7 d2e74d2 f.23.12.1 (D:12-45) IS 1.9 6E+02 0.044 13.4 1.9 12 252-263 6-17 (34)
8 d1o82a_ a.64.2.1 (A:) Bacterio 1.8 4.8E+02 0.035 15.9 1.5 21 67-87 23-43 (70)
9 d2au5a1 a.244.1.1 (A:1-132) Hy 1.8 4.1E+02 0.03 18.3 1.3 19 64-82 50-68 (132)
10 d1q90r_ f.23.12.1 (R:) ISP sub 1.6 7E+02 0.051 13.8 1.9 11 252-262 11-21 (39)
No 1
>d2dasa1 g.39.1.17 (A:8-56) Zinc finger MYM-type protein 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.39 E-value=31 Score=20.95 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.9
Q ss_pred hhhccccCCCccccccC
Q 023487 264 NAFKREKNPQQTSYHRR 280 (281)
Q Consensus 264 ~g~~k~~~~~~~~~~~~ 280 (281)
.|++|.+.|.|+.++|.
T Consensus 17 a~Ckk~lqKGQTAyqrk 33 (49)
T d2dasa1 17 ANCKKPLQKGQTAYQRK 33 (49)
T ss_dssp TTTCCBCCTTSCCEECT
T ss_pred cccchHHhccchHHhhC
Confidence 37899999999999985
No 2
>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.09 E-value=2.5e+02 Score=21.46 Aligned_cols=45 Identities=20% Similarity=0.126 Sum_probs=29.2
Q ss_pred hHHHHHHHH------HHHHHHHhhcccchhhHHHHHHHhhcchhhhHHHHH
Q 023487 145 GILVHHLLL------LVCFTLALYRNVTINYLILTLICELHSIFLHVRKVR 189 (281)
Q Consensus 145 ~~l~HH~~~------l~~f~~~l~~~~~~~~~~~~Ll~ElSTPFlnlR~~L 189 (281)
..++||+++ +.||.++=.++....==.-....|+.|-|+.-+--|
T Consensus 17 aVFL~yv~sq~DPspLLfyL~td~yk~~~~Kd~rk~~~Ei~stFL~~~ApL 67 (190)
T d1iapa_ 17 MALLQHVALQFEPGPLLCCLHADMLGSLGPKEAKKAFLDFYHSFLEKTAVL 67 (190)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSTTCTT
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhccChHHHHHHHHHHHHHHcCCCCCc
Confidence 356777665 677776665555444344567789999998765443
No 3
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.27 E-value=8.4e+02 Score=17.93 Aligned_cols=12 Identities=17% Similarity=0.534 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 023487 207 VLNWITFFLARI 218 (281)
Q Consensus 207 ~l~~~tFf~~Ri 218 (281)
....++|++|-+
T Consensus 255 ~~i~~~f~~~~~ 266 (348)
T d1u19a_ 255 IIMVIAFLICWL 266 (348)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEeehHHHHHhh
Confidence 445556665544
No 4
>d1r6ra_ a.190.1.1 (A:) Flavivirus capsid protein C {Dengue virus type 2 [TaxId: 11060]}
Probab=3.15 E-value=66 Score=21.50 Aligned_cols=10 Identities=20% Similarity=0.690 Sum_probs=4.2
Q ss_pred HHHhhhcccc
Q 023487 261 DLFNAFKREK 270 (281)
Q Consensus 261 ki~~g~~k~~ 270 (281)
|++++|+||.
T Consensus 59 k~Lk~FKk~i 68 (80)
T d1r6ra_ 59 NVLRGFRKEI 68 (80)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 5
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.38 E-value=4.3e+02 Score=16.83 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 023487 116 YPALCFSCGYFAYDQWDM 133 (281)
Q Consensus 116 ~~~~~iS~GYFl~Dl~~~ 133 (281)
..+.-+.++|.+||-..=
T Consensus 47 ~v~PPfi~~Y~iy~W~~~ 64 (75)
T d1ppjg_ 47 RVAPPFVAFYLVYTWGTQ 64 (75)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHH
Confidence 456778899999986543
No 6
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.06 E-value=4e+02 Score=22.33 Aligned_cols=23 Identities=35% Similarity=0.319 Sum_probs=17.1
Q ss_pred HHHHHhhcchhhhHHHHHHHhCC
Q 023487 172 LTLICELHSIFLHVRKVRRMAGI 194 (281)
Q Consensus 172 ~~Ll~ElSTPFlnlR~~L~~~g~ 194 (281)
..|--|.-.-|-|+-.+|+-.|=
T Consensus 277 ~~lk~efr~~frnisriMDCV~C 299 (374)
T d1rp4a_ 277 LTLKDEFRSRFKNVTKIMDCVQC 299 (374)
T ss_dssp HHHHHHHHHHHHHHHHGGGGCCS
T ss_pred HHHHHHHHHHHHHHHHHHcccCc
Confidence 34557788888888888877765
No 7
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.93 E-value=6e+02 Score=13.44 Aligned_cols=12 Identities=8% Similarity=-0.034 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q 023487 252 NLLNISLGIDLF 263 (281)
Q Consensus 252 ~vLNi~wF~ki~ 263 (281)
..||+.+|..+.
T Consensus 6 qfmnlltfgt~t 17 (34)
T d2e74d2 6 QFMNLLAFGTVT 17 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhHH
Confidence 468888887654
No 8
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=1.81 E-value=4.8e+02 Score=15.92 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=17.5
Q ss_pred CceehhhHHHHHHHHHHHHHH
Q 023487 67 LFVNTSVSLLHSTITSVSVVF 87 (281)
Q Consensus 67 ~W~nr~VS~vHAiv~~~~al~ 87 (281)
-|...+||.+-|+-++.++++
T Consensus 23 g~vttivsil~avgsgglsll 43 (70)
T d1o82a_ 23 GWVTTIVSILTAVGSGGLSLL 43 (70)
T ss_dssp CCHHHHHHHHHHHCHHHHHHH
T ss_pred cchhhHHHHHHHHccccHHHH
Confidence 588899999999888887763
No 9
>d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947 {Enterococcus faecalis [TaxId: 1351]}
Probab=1.78 E-value=4.1e+02 Score=18.35 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=17.8
Q ss_pred CCCCceehhhHHHHHHHHH
Q 023487 64 RDPLFVNTSVSLLHSTITS 82 (281)
Q Consensus 64 k~~~W~nr~VS~vHAiv~~ 82 (281)
++++|-...+...++++++
T Consensus 50 ~~P~WL~Es~~~~Q~~iV~ 68 (132)
T d2au5a1 50 KDPNWLEEAAGGMQGVIVQ 68 (132)
T ss_dssp HCTTHHHHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHhHHHHHH
Confidence 8889999999999999987
No 10
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.61 E-value=7e+02 Score=13.79 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=7.3
Q ss_pred HHHHHHHHHHH
Q 023487 252 NLLNISLGIDL 262 (281)
Q Consensus 252 ~vLNi~wF~ki 262 (281)
++||+.++--+
T Consensus 11 ~~MNLll~G~~ 21 (39)
T d1q90r_ 11 NIMNLILAGGA 21 (39)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 56787776544
Done!