BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023488
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HFF2|YL92_SCHPO Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC683.02c PE=4 SV=1
Length = 218
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 61/98 (62%), Gaps = 6/98 (6%)
Query: 101 KNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFI 160
++K C CR++GH +++CP D + +C+ CG HSL C + G KFA CFI
Sbjct: 75 RDKFCFACRQQGHIVQDCPEAKD---NVSICFRCGSKEHSLNACSKK---GPLKFAKCFI 128
Query: 161 CKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDC 198
C E GHLS C QN G+YPKGGCCK C V HLA+DC
Sbjct: 129 CHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166
>sp|Q8N567|ZCHC9_HUMAN Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens
GN=ZCCHC9 PE=2 SV=2
Length = 271
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 104 ICLVCRRRGHTLKNCPSK-NDETESTKLCYNCGQAGHSLAQCPQPLQD--GGTKFASCFI 160
+C CR+ GH + +CP+ ++ T +CY CG H + +C + G FA CF+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 161 CKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCP 199
C E GHLS++CP N G+Y GG CK+CG V HL +DCP
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCP 227
>sp|Q8R1J3|ZCHC9_MOUSE Zinc finger CCHC domain-containing protein 9 OS=Mus musculus
GN=Zcchc9 PE=2 SV=1
Length = 273
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 104 ICLVCRRRGHTLKNCPSKNDETE-STKLCYNCGQAGHSLAQCPQPLQD--GGTKFASCFI 160
+C CR+ GH + +CP+ + + T +CY CG H +++C + G FA CF+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188
Query: 161 CKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDC 198
C E GHLS++CP N G+Y GG CK+CG V H +DC
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDC 226
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 109 RRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPL--QDGGTKFASCFICKEQGH 166
RR G LK +K ++ +C++C Q GH +A CP L QD GT C+ C H
Sbjct: 112 RREGRRLKRQAAK----KNAMVCFHCRQPGHGIADCPAVLESQDMGTGI--CYRCGSTEH 165
Query: 167 LSKNCPQN---AHGIYPKGGCCKICGGVTHLARDCPN--KGIQGFTASSK 211
C N A G +P C +CG + HL+R CP+ KG+ S K
Sbjct: 166 EMSKCRANVDPALGEFPFAKCF-VCGEMGHLSRSCPDNTKGVYADGGSCK 214
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1
Length = 271
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 20/160 (12%)
Query: 69 LRVPGMKPGESCFICKAKEHIAKHCPMKAEW--EKNKICLVCRRRGHTLKNCPSKNDETE 126
++ P + SC C + H A+ CP E++ C C GH + CP++
Sbjct: 7 VKRPRTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGA 66
Query: 127 STKL-CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQN----------- 174
+ + C+ CG+AGH CP + G K C+ C ++GHLS++CP +
Sbjct: 67 AGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQK 126
Query: 175 -----AHGIYPKGGCCKICGGVTHLARDCPNKGIQGFTAS 209
A G Y C CG H++RDCPN G G++ +
Sbjct: 127 RGRSGAQGGYSGDRTCYKCGDAGHISRDCPN-GQGGYSGA 165
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 23/152 (15%)
Query: 79 SCFICKAKEHIAKHCPMKAE--WEKNKICLVCRRRGHTLKNCPSKNDETESTKL-CYNCG 135
+CF C + H+++ CP +A C C GH ++CP+ + CY CG
Sbjct: 44 TCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCG 103
Query: 136 QAGHSLAQCPQP----------------LQDGGTKFASCFICKEQGHLSKNCPQNAHGIY 179
Q GH CP Q G + +C+ C + GH+S++CP N G Y
Sbjct: 104 QEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCP-NGQGGY 162
Query: 180 PKGG--CCKICGGVTHLARDCPNKGIQGFTAS 209
G C CG H++RDCPN G G++ +
Sbjct: 163 SGAGDRTCYKCGDAGHISRDCPN-GQGGYSGA 193
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 25/150 (16%)
Query: 79 SCFICKAKEHIAKHCPMKAE--WEKNKICLVCRRRGHTLKNCPSKNDET----------- 125
+CF C H+++ CP A+ K C C + GH ++CPS +
Sbjct: 71 TCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRS 130
Query: 126 ------ESTKLCYNCGQAGHSLAQCPQPLQDG--GTKFASCFICKEQGHLSKNCPQNAHG 177
+ CY CG AGH CP Q G G +C+ C + GH+S++CP N G
Sbjct: 131 GAQGGYSGDRTCYKCGDAGHISRDCPN-GQGGYSGAGDRTCYKCGDAGHISRDCP-NGQG 188
Query: 178 IYPKGGC--CKICGGVTHLARDCPNKGIQG 205
Y G C CG H++R+CP+ G G
Sbjct: 189 GYSGAGDRKCYKCGESGHMSRECPSAGSTG 218
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 28/152 (18%)
Query: 72 PGMKPGESCFICKAKEHIAKHCP------------------MKAEWEKNKICLVCRRRGH 113
PG G C+ C + H+++ CP + + ++ C C GH
Sbjct: 91 PGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGH 150
Query: 114 TLKNCPSKNDETEST--KLCYNCGQAGHSLAQCPQPLQDGGTKFAS---CFICKEQGHLS 168
++CP+ + CY CG AGH CP GG A C+ C E GH+S
Sbjct: 151 ISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPN--GQGGYSGAGDRKCYKCGESGHMS 208
Query: 169 KNCPQ-NAHGIYPKGGCCKICGGVTHLARDCP 199
+ CP + G + C CG H++R+CP
Sbjct: 209 RECPSAGSTGSGDRA--CYKCGKPGHISRECP 238
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Query: 79 SCFICKAKEHIAKHCP---MKAEWEKNKICLVCRRRGHTLKNCPSKNDETEST--KLCYN 133
+C+ C HI++ CP ++ C C GH ++CP+ + CY
Sbjct: 141 TCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYK 200
Query: 134 CGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGG----CCKICG 189
CG++GH +CP G A C+ C + GH+S+ CP+ G C CG
Sbjct: 201 CGESGHMSRECPSAGSTGSGDRA-CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCG 259
Query: 190 GVTHLARDCPN 200
H++RDCP+
Sbjct: 260 EAGHISRDCPS 270
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 79 SCFICKAKEHIAKHCP---MKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCG 135
+C+ C HI++ CP ++ C C GH + CPS + CY CG
Sbjct: 169 TCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCG 228
Query: 136 QAGHSLAQCPQPLQDGGTKFA----SCFICKEQGHLSKNCPQN 174
+ GH +CP+ G +C+ C E GH+S++CP +
Sbjct: 229 KPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
>sp|Q8T8R1|Y3800_DROME CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster
GN=CG3800 PE=1 SV=1
Length = 165
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 78 ESCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQA 137
E C+ C H A+ CP +AE C C GH K+C ++ T CY C +
Sbjct: 55 EKCYKCNQFGHFARACPEEAE-----RCYRCNGIGHISKDCTQADNPT-----CYRCNKT 104
Query: 138 GHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARD 197
GH + CP+ + + G SC+ C GH+SKNCP+ + Y CG HL R+
Sbjct: 105 GHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSKTCYG-------CGKSGHLRRE 157
Query: 198 CPNKG 202
C KG
Sbjct: 158 CDEKG 162
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 30/149 (20%)
Query: 80 CFICKAKEHIAKHCPMKAEWEK-------NKICLVCRRRGHTLKNCPSKN----DETEST 128
C+ C H A+ C ++ N C C GH ++C K+ D+ +
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 129 KL----CYNCGQAGHSLAQCPQ-----PLQDGGTKFASCFICKEQGHLSKNCP---QNAH 176
K CY CG GH C Q ++ GG +C+ C GH++++C Q +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSR 253
Query: 177 GIYPKGGCCKICGGVTHLARDCPNKGIQG 205
G Y CGG HLARDC +G G
Sbjct: 254 GCYQ-------CGGSGHLARDCDQRGSGG 275
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 25/147 (17%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKI-------CLVCRRRGHTLKNCPS--KNDETESTKL 130
C+ C HI+K C + + C C GH ++C S D+ +TK
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 131 ----CYNCGQAGHSLAQCPQ-PLQDGGTKFA------SCFICKEQGHLSKNCPQN-AHGI 178
CY CG GH C Q + +G + A C+ C + GH +++C Q A G
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGN 221
Query: 179 YPKGG----CCKICGGVTHLARDCPNK 201
GG C CGGV H+ARDC K
Sbjct: 222 VRSGGGGSGTCYSCGGVGHIARDCATK 248
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 78 ESCFICKAKEHIAKHCP-------MKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKL 130
+ C+ C H A+ C +++ + C C GH ++C +K + ++
Sbjct: 198 DGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKR---QPSRG 254
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNA 175
CY CG +GH C Q GG +C+ C ++GH ++ C A
Sbjct: 255 CYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECSSVA 299
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 75 KPGESCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNC 134
+PG C+ C H A+ C K IC C + GH C E + K CY C
Sbjct: 14 RPGPRCYNCGENGHQAREC------TKGSICYNCNQTGHKASEC----TEPQQEKTCYAC 63
Query: 135 GQAGHSLAQC---PQPLQDGGTKFASCFICKEQGHLSKNCPQNAH------GIYPKGGCC 185
G AGH + C P P Q A C+ C GH++++C N G + C
Sbjct: 64 GTAGHLVRDCPSSPNPRQG-----AECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNC 118
Query: 186 KICGGVTHLARDC 198
CG H ARDC
Sbjct: 119 YACGSYGHQARDC 131
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 16/101 (15%)
Query: 105 CLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQ 164
C C GH + C + +CYNC Q GH ++C +P Q+ +C+ C
Sbjct: 19 CYNCGENGHQARECTKGS-------ICYNCNQTGHKASECTEPQQE-----KTCYACGTA 66
Query: 165 GHLSKNCPQNAHGIYPKGGC-CKICGGVTHLARDCPNKGIQ 204
GHL ++CP + + P+ G C CG V H+ARDC G Q
Sbjct: 67 GHLVRDCPSSPN---PRQGAECYKCGRVGHIARDCRTNGQQ 104
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 18/128 (14%)
Query: 77 GESCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQ 136
G C+ C H A C E ++ K C C GH +++CPS + + + CY CG+
Sbjct: 35 GSICYNCNQTGHKASEC---TEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE-CYKCGR 90
Query: 137 AGHSLAQCPQPLQDGGTKFA------SCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGG 190
GH C Q G +F +C+ C GH +++C C CG
Sbjct: 91 VGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK--------CYSCGK 142
Query: 191 VTHLARDC 198
+ H + +C
Sbjct: 143 IGHRSFEC 150
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 20/133 (15%)
Query: 79 SCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDET-------ESTKLC 131
+C+ C H+ + CP + C C R GH ++C + ++ S C
Sbjct: 59 TCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNC 118
Query: 132 YNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGV 191
Y CG GH C T C+ C + GH S C Q + G C C
Sbjct: 119 YACGSYGHQARDC--------TMGVKCYSCGKIGHRSFECQQASDGQL-----CYKCNQP 165
Query: 192 THLARDCPNKGIQ 204
H+A +C + I+
Sbjct: 166 GHIAVNCTSPVIE 178
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 24/138 (17%)
Query: 46 KKAESKDPNRNEKSMKRVFTRHPLR----VPGMKPGESCFICKAKEHIAKHCPMKAEWE- 100
K +E +P + + H +R P + G C+ C HIA+ C +
Sbjct: 47 KASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSG 106
Query: 101 -------KNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGT 153
N C C GH ++C T K CY+CG+ GH +C Q DG
Sbjct: 107 GRFGGHRSNMNCYACGSYGHQARDC------TMGVK-CYSCGKIGHRSFEC-QQASDG-- 156
Query: 154 KFASCFICKEQGHLSKNC 171
C+ C + GH++ NC
Sbjct: 157 --QLCYKCNQPGHIAVNC 172
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 17/120 (14%)
Query: 29 PKDPSEKKKKKSSKFKRKKAESKDPNRNEKSMKRVFTRHPLRVPGMKPGESCFICKAKEH 88
P P+ ++ + K R ++D N + F H + +C+ C + H
Sbjct: 74 PSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGH-------RSNMNCYACGSYGH 126
Query: 89 IAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPL 148
A+ C M + C C + GH C +D +LCY C Q GH C P+
Sbjct: 127 QARDCTMGVK------CYSCGKIGHRSFECQQASD----GQLCYKCNQPGHIAVNCTSPV 176
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 26/132 (19%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGH 139
C+ C H+AK C + +++K C C R GH K+C K + E + CYNCG+ GH
Sbjct: 48 CYRCGESGHLAKDCDL----QEDKACYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGH 101
Query: 140 SLAQCPQP-------------LQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCK 186
C +Q TK C+ C E GH++ NC + + C
Sbjct: 102 LARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKTSEVN------CY 154
Query: 187 ICGGVTHLARDC 198
CG HLAR+C
Sbjct: 155 RCGESGHLAREC 166
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 104 ICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKE 163
IC C GH K+C + D K CYNCG+ GH C +P ++ + C+ C +
Sbjct: 47 ICYRCGESGHLAKDCDLQED-----KACYNCGRGGHIAKDCKEPKRE---REQCCYNCGK 98
Query: 164 QGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDC 198
GHL+++C H K C CG H+ +DC
Sbjct: 99 PGHLARDCD---HADEQK---CYSCGEFGHIQKDC 127
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
Query: 67 HPLRVPGMKPGESCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDET- 125
H + ++ ++C+ C HIAK C + + E+ + C C + GH ++C +++
Sbjct: 56 HLAKDCDLQEDKACYNCGRGGHIAKDCK-EPKREREQCCYNCGKPGHLARDCDHADEQKC 114
Query: 126 -----------ESTKL-CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQ 173
+ TK+ CY CG+ GH C + T +C+ C E GHL++ C
Sbjct: 115 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSK------TSEVNCYRCGESGHLARECTI 168
Query: 174 NA 175
A
Sbjct: 169 EA 170
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 33/107 (30%)
Query: 127 STKLCYNCGQAGHSLAQCPQPLQDGGT---------KFAS------CFICKEQGHLSKNC 171
S+ C+ CG+ GH +CP + G +F S C+ C E GHL+K+C
Sbjct: 2 SSNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC 61
Query: 172 P-QNAHGIY--PKGG---------------CCKICGGVTHLARDCPN 200
Q Y +GG CC CG HLARDC +
Sbjct: 62 DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 108
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 26/132 (19%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGH 139
C+ C H+AK C + ++++ C C R GH K+C K + E + CYNCG+ GH
Sbjct: 54 CYRCGESGHLAKDCDL----QEDEACYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGH 107
Query: 140 SLAQCPQP-------------LQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCK 186
C +Q TK C+ C E GH++ NC + + C
Sbjct: 108 LARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKTSEVN------CY 160
Query: 187 ICGGVTHLARDC 198
CG HLAR+C
Sbjct: 161 RCGESGHLAREC 172
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 104 ICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKE 163
IC C GH K+C + DE CYNCG+ GH C +P ++ + C+ C +
Sbjct: 53 ICYRCGESGHLAKDCDLQEDEA-----CYNCGRGGHIAKDCKEPKRE---REQCCYNCGK 104
Query: 164 QGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDC 198
GHL+++C H K C CG H+ +DC
Sbjct: 105 PGHLARDCD---HADEQK---CYSCGEFGHIQKDC 133
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 31/118 (26%)
Query: 105 CLVCRRRGHTLKNCPSKNDETESTK----------------------LCYNCGQAGHSLA 142
C C R GH + CP+ + +CY CG++GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 143 QCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPN 200
C LQ+ +C+ C GH++K+C + + CC CG HLARDC +
Sbjct: 66 DC--DLQED----EACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDCDH 114
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorhabditis elegans GN=glh-2
PE=1 SV=1
Length = 974
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 38/128 (29%)
Query: 79 SCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSK----------------- 121
+CF C+ H + CP + + ++C C++ GH ++CP +
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGG 431
Query: 122 --------------NDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHL 167
N+E C+NC GH A+CP+P + CF C EQGH
Sbjct: 432 NDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPR-------GCFNCGEQGHR 484
Query: 168 SKNCPQNA 175
S CP A
Sbjct: 485 SNECPNPA 492
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 100 EKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQ 146
E+N C C++ GH +CP E E ++CYNC Q GH+ CP+
Sbjct: 254 ERNNNCFNCQQPGHRSNDCPEPKKEREP-RVCYNCQQPGHNSRDCPE 299
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 123 DETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQ 173
D E C+NC Q GH CP+P ++ + C+ C++ GH S++CP+
Sbjct: 251 DRGERNNNCFNCQQPGHRSNDCPEPKKEREPRV--CYNCQQPGHNSRDCPE 299
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 123 DETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQ 173
D E C+NC Q GH CP+P ++ + C+ C++ GH S++CP+
Sbjct: 365 DRGERNNNCFNCQQPGHRSNDCPEPKKEREPRV--CYNCQQPGHNSRDCPE 413
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 149 QDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPN-----KGI 203
QD G + +CF C++ GH S +CP+ P+ C C H +RDCP +G
Sbjct: 364 QDRGERNNNCFNCQQPGHRSNDCPEPKKEREPR--VCYNCQQPGHNSRDCPEERKPREGR 421
Query: 204 QGFTA 208
GFT+
Sbjct: 422 NGFTS 426
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 79 SCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSK 121
+CF C+ H + CP + + ++C C++ GH ++CP +
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 300
>sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIS2 PE=1 SV=1
Length = 153
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGH 139
C+ C H+ C M E K C C GH C + + C+NC Q GH
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEF-KQCYNCGETGHVRSEC--------TVQRCFNCNQTGH 75
Query: 140 SLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCP 199
+CP+P + SC+ C H++K+C + GI G C CG H++RDC
Sbjct: 76 ISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKED-GI--SGLKCYTCGQAGHMSRDCQ 132
Query: 200 N 200
N
Sbjct: 133 N 133
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 25/121 (20%)
Query: 103 KICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQP--------LQDGGT- 153
K C VC + GH ++C +S +LCYNC + GH C P G T
Sbjct: 4 KACYVCGKIGHLAEDC-------DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETG 56
Query: 154 ------KFASCFICKEQGHLSKNCPQ-NAHGIYPKGGCCKICGGVTHLARDCPNK-GIQG 205
CF C + GH+S+ CP+ + K C K CGG H+A+DC + GI G
Sbjct: 57 HVRSECTVQRCFNCNQTGHISRECPEPKKTSRFSKVSCYK-CGGPNHMAKDCMKEDGISG 115
Query: 206 F 206
Sbjct: 116 L 116
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKL-CYNCGQAG 138
C+ C H+ C ++ C C + GH + CP + +K+ CY CG
Sbjct: 49 CYNCGETGHVRSECTVQR-------CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPN 101
Query: 139 HSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDC 198
H C +++ G C+ C + GH+S++C QN Y C H+++DC
Sbjct: 102 HMAKDC---MKEDGISGLKCYTCGQAGHMSRDC-QNDRLCYN-------CNETGHISKDC 150
Query: 199 P 199
P
Sbjct: 151 P 151
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 78 ESCFICKAKEHIAKHCPMKAEWEK-NKI-CLVCRRRGHTLKNCPSKNDETESTKLCYNCG 135
+ CF C HI++ CP + + +K+ C C H K+C K D K CY CG
Sbjct: 65 QRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDC-MKEDGISGLK-CYTCG 122
Query: 136 QAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQ 173
QAGH C C+ C E GH+SK+CP+
Sbjct: 123 QAGHMSRDCQNDRL--------CYNCNETGHISKDCPK 152
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 27/132 (20%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGH 139
C+ C H+AK C ++ + C C R GH K+C K + E + CYNCG+ GH
Sbjct: 54 CYRCGESGHLAKDCDLQED-----ACYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGH 106
Query: 140 SLAQCPQP-------------LQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCK 186
C +Q TK C+ C E GH++ NC + + C
Sbjct: 107 LARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKTSEVN------CY 159
Query: 187 ICGGVTHLARDC 198
CG HLAR+C
Sbjct: 160 RCGESGHLAREC 171
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 104 ICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKE 163
IC C GH K+C + D CYNCG+ GH C +P ++ + C+ C +
Sbjct: 53 ICYRCGESGHLAKDCDLQED------ACYNCGRGGHIAKDCKEPKRE---REQCCYNCGK 103
Query: 164 QGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDC 198
GHL+++C H K C CG H+ +DC
Sbjct: 104 PGHLARDCD---HADEQK---CYSCGEFGHIQKDC 132
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 20/111 (18%)
Query: 78 ESCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDET------------ 125
++C+ C HIAK C + + E+ + C C + GH ++C +++
Sbjct: 72 DACYNCGRGGHIAKDCK-EPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQK 130
Query: 126 ESTKL-CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNA 175
+ TK+ CY CG+ GH C + T +C+ C E GHL++ C A
Sbjct: 131 DCTKVKCYRCGETGHVAINCSK------TSEVNCYRCGESGHLARECTIEA 175
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 27/132 (20%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGH 139
C+ C H+AK C ++ + C C R GH K+C K + E + CYNCG+ GH
Sbjct: 54 CYRCGESGHLAKDCDLQED-----ACYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGH 106
Query: 140 SLAQCPQP-------------LQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCK 186
C +Q TK C+ C E GH++ NC + + C
Sbjct: 107 LARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKTSEVN------CY 159
Query: 187 ICGGVTHLARDC 198
CG HLAR+C
Sbjct: 160 RCGESGHLAREC 171
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 104 ICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKE 163
IC C GH K+C + D CYNCG+ GH C +P ++ + C+ C +
Sbjct: 53 ICYRCGESGHLAKDCDLQED------ACYNCGRGGHIAKDCKEPKRE---REQCCYNCGK 103
Query: 164 QGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDC 198
GHL+++C H K C CG H+ +DC
Sbjct: 104 PGHLARDCD---HADEQK---CYSCGEFGHIQKDC 132
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 20/111 (18%)
Query: 78 ESCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDET------------ 125
++C+ C HIAK C + + E+ + C C + GH ++C +++
Sbjct: 72 DACYNCGRGGHIAKDCK-EPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQK 130
Query: 126 ESTKL-CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNA 175
+ TK+ CY CG+ GH C + T +C+ C E GHL++ C A
Sbjct: 131 DCTKVKCYRCGETGHVAINCSK------TSEVNCYRCGESGHLARECTIEA 175
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 27/132 (20%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGH 139
C+ C H+AK C ++ + C C R GH K+C K + E + CYNCG+ GH
Sbjct: 54 CYRCGESGHLAKDCDLQED-----ACYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGH 106
Query: 140 SLAQCPQP-------------LQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCK 186
C +Q TK C+ C E GH++ NC + + C
Sbjct: 107 LARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKTSEVN------CY 159
Query: 187 ICGGVTHLARDC 198
CG HLAR+C
Sbjct: 160 RCGESGHLAREC 171
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 104 ICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKE 163
IC C GH K+C + D CYNCG+ GH C +P ++ + C+ C +
Sbjct: 53 ICYRCGESGHLAKDCDLQED------ACYNCGRGGHIAKDCKEPKRE---REQCCYNCGK 103
Query: 164 QGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDC 198
GHL+++C H K C CG H+ +DC
Sbjct: 104 PGHLARDCD---HADEQK---CYSCGEFGHIQKDC 132
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 20/111 (18%)
Query: 78 ESCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDET------------ 125
++C+ C HIAK C + + E+ + C C + GH ++C +++
Sbjct: 72 DACYNCGRGGHIAKDCK-EPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQK 130
Query: 126 ESTKL-CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNA 175
+ TK+ CY CG+ GH C + T +C+ C E GHL++ C A
Sbjct: 131 DCTKVKCYRCGETGHVAINCSK------TSEVNCYRCGESGHLARECTIEA 175
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 27/132 (20%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGH 139
C+ C H+AK C ++ + C C R GH K+C K + E + CYNCG+ GH
Sbjct: 47 CYRCGESGHLAKDCDLQED-----ACYNCGRGGHIAKDC--KEPKREREQCCYNCGKPGH 99
Query: 140 SLAQCPQP-------------LQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCK 186
C +Q TK C+ C E GH++ NC + + C
Sbjct: 100 LARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKTSEVN------CY 152
Query: 187 ICGGVTHLARDC 198
CG HLAR+C
Sbjct: 153 RCGESGHLAREC 164
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 31/135 (22%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNK----------------ICLVCRRRGHTLKNCPSKND 123
CF C H A+ CP + IC C GH K+C + D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 124 ETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGG 183
CYNCG+ GH C +P ++ + C+ C + GHL+++C H K
Sbjct: 66 ------ACYNCGRGGHIAKDCKEPKRE---REQCCYNCGKPGHLARDCD---HADEQK-- 111
Query: 184 CCKICGGVTHLARDC 198
C CG H+ +DC
Sbjct: 112 -CYSCGEFGHIQKDC 125
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 20/111 (18%)
Query: 78 ESCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDET------------ 125
++C+ C HIAK C + + E+ + C C + GH ++C +++
Sbjct: 65 DACYNCGRGGHIAKDCK-EPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQK 123
Query: 126 ESTKL-CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNA 175
+ TK+ CY CG+ GH C + T +C+ C E GHL++ C A
Sbjct: 124 DCTKVKCYRCGETGHVAINCSK------TSEVNCYRCGESGHLARECTIEA 168
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 31/105 (29%)
Query: 127 STKLCYNCGQAGHSLAQCPQPLQDGGT--------KFAS------CFICKEQGHLSKNCP 172
S+ C+ CG++GH +CP G +F S C+ C E GHL+K+C
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCD 61
Query: 173 QNAHGIY--PKGG---------------CCKICGGVTHLARDCPN 200
Y +GG CC CG HLARDC +
Sbjct: 62 LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDH 106
>sp|Q74230|GAG_HV2EH Gag polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate EHO) GN=gag PE=3 SV=3
Length = 519
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 128 TKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKI 187
T C+NCG+AGH+ QC P + G C+ C +QGH+ CP+ G G K
Sbjct: 386 TVTCWNCGKAGHTARQCKAPRRQG------CWKCGQQGHIMSKCPERQAGFLGFGPWGK- 438
Query: 188 CGGVTHLARDCPNKGIQGFTASSKQAM-AGGERPTGQVTKFTSGDDLLDDFLTEDANIGN 246
R+ P + QG S+ A G P G + D ++ L +G
Sbjct: 439 ------KPRNFPVQAPQGIVPSAPPMNPAFGMTPQGAIPSAPPADP-AEEMLKNYMQLGK 491
Query: 247 KDKSS 251
K K +
Sbjct: 492 KQKEN 496
>sp|P17757|POL_HV2D1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate D194) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIY--PKGGCC-KI 187
C+NCG+ GHS QC P + G C+ C + GH+ NCP+ G P G ++
Sbjct: 391 CWNCGKEGHSAKQCRAPRRQG------CWKCGKSGHIMANCPERQAGFLDGPTGKAAPQL 444
Query: 188 CGGVTHLARD---CPNKGIQGFTASSKQAMAGGERPTGQVTKFTSG 230
G + D PN+ G A ER G+ + G
Sbjct: 445 PRGPSSSGADTNSTPNRSSSGPVGEIYAAREKAERAEGETIQGGDG 490
Score = 31.6 bits (70), Expect = 6.0, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 22/134 (16%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGH 139
C+ C + H AK C + + C C + GH + NCP + + + G G
Sbjct: 391 CWNCGKEGHSAKQC----RAPRRQGCWKCGKSGHIMANCPER-------QAGFLDGPTGK 439
Query: 140 SLAQCPQPLQDGGTKFASCFICKEQG-----HLSKNCPQNAHGIYPKGGCCKICGGVT-- 192
+ Q P+ G S G + ++ + A G +GG GG+T
Sbjct: 440 AAPQLPRGPSSSGADTNSTPNRSSSGPVGEIYAAREKAERAEGETIQGG----DGGLTAP 495
Query: 193 HLARDCPNKGIQGF 206
RD P +G +G
Sbjct: 496 RAGRDAPQRGDRGL 509
>sp|P0CO44|BBP_CRYNJ Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=BBP PE=3 SV=1
Length = 546
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 158 CFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPNKGIQGFTASSKQAM 214
C C E+GH CPQ +Y C+ICGG H+ARDC +G T + + A
Sbjct: 370 CQNCGEKGHRRWECPQQR--VYSANVICRICGGAGHMARDCRGRGDPSLTQNKQTAF 424
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKND-----------ETEST 128
C C K H CP + + N IC +C GH ++C + D ++E T
Sbjct: 370 CQNCGEKGHRRWECPQQRVYSANVICRICGGAGHMARDCRGRGDPSLTQNKQTAFDSEYT 429
Query: 129 KLCYNCGQAGHS 140
L G+ G S
Sbjct: 430 ALMAELGEGGGS 441
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 100 EKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQC-----PQPLQDGGTK 154
++N++C C +GH CP + + + +C CG AGH C P Q+ T
Sbjct: 365 DENQLCQNCGEKGHRRWECPQQRVYSANV-ICRICGGAGHMARDCRGRGDPSLTQNKQTA 423
Query: 155 FASCFIC 161
F S +
Sbjct: 424 FDSEYTA 430
>sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=BBP PE=3 SV=1
Length = 546
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 158 CFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPNKGIQGFTASSKQAM 214
C C E+GH CPQ +Y C+ICGG H+ARDC +G T + + A
Sbjct: 370 CQNCGEKGHRRWECPQQR--VYSANVICRICGGAGHMARDCRGRGDPSLTQNKQTAF 424
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKND-----------ETEST 128
C C K H CP + + N IC +C GH ++C + D ++E T
Sbjct: 370 CQNCGEKGHRRWECPQQRVYSANVICRICGGAGHMARDCRGRGDPSLTQNKQTAFDSEYT 429
Query: 129 KLCYNCGQAGHS 140
L G+ G S
Sbjct: 430 ALMAELGEGGGS 441
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 100 EKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQC-----PQPLQDGGTK 154
++N++C C +GH CP + + + +C CG AGH C P Q+ T
Sbjct: 365 DENQLCQNCGEKGHRRWECPQQRVYSANV-ICRICGGAGHMARDCRGRGDPSLTQNKQTA 423
Query: 155 FASCFIC 161
F S +
Sbjct: 424 FDSEYTA 430
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans GN=glh-1
PE=1 SV=3
Length = 763
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 40/130 (30%)
Query: 79 SCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKL-------- 130
+CF C+ H + CP + + ++C C++ GHT + C + E
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGF 218
Query: 131 -------------------------CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQG 165
C+NC GH A+CP+P + CF C EQG
Sbjct: 219 GNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR-------GCFNCGEQG 271
Query: 166 HLSKNCPQNA 175
H S CP A
Sbjct: 272 HRSNECPNPA 281
>sp|Q74120|POL_HV2KR Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate KR) GN=gag-pol PE=3 SV=3
Length = 1463
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGI---YPKG 182
C+NCG+ GHS QC P + G C+ C + GH+ NCP+ G +P G
Sbjct: 391 CWNCGKDGHSARQCRAPRRQG------CWKCGKSGHVMANCPERQAGFLRDWPMG 439
>sp|P04584|POL_HV2RO Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate ROD) GN=gag-pol PE=1 SV=3
Length = 1464
Score = 45.4 bits (106), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKG 182
C+NCG+ GHS QC P + G C+ C + GH+ NCP G G
Sbjct: 391 CWNCGKEGHSARQCRAPRRQG------CWKCGKPGHIMTNCPDRQAGFLRTG 436
>sp|Q9P795|AIR1_SCHPO Protein air1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=air1 PE=1 SV=2
Length = 315
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 42/106 (39%), Gaps = 20/106 (18%)
Query: 70 RVPGMKPGES--CFICKAKEHIAKHCPMKAEWEKNKICLVC-RRRGHTLKNCPSKNDETE 126
R G P ES C CK HI+K CP + +C C H CP
Sbjct: 79 RYFGSDPSESIVCHNCKGNGHISKDCP-------HVLCTTCGAIDDHISVRCPW------ 125
Query: 127 STKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCP 172
TK C NCG GH A+C +P + G C C H S CP
Sbjct: 126 -TKKCMNCGLLGHIAARCSEPRKRGP---RVCRTCHTDTHTSSTCP 167
>sp|Q89928|POL_HV2EH Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
B (isolate EHO) GN=gag-pol PE=3 SV=3
Length = 1464
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 128 TKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGI 178
T C+NCG+AGH+ QC P + G C+ C +QGH+ CP+ G
Sbjct: 386 TVTCWNCGKAGHTARQCKAPRRQG------CWKCGQQGHIMSKCPERQAGF 430
>sp|P12451|POL_HV2SB Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate SBLISY) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHG 177
C+NCG+ GHS QC P + G C+ C + GH+ NCP G
Sbjct: 390 CWNCGKEGHSARQCRAPRRQG------CWKCGKSGHIMANCPDRQAG 430
>sp|P24107|POL_HV2CA Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate CAM2) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 119 PSKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHG 177
P + T C+NCG+ GHS QC P + G C+ C + GH+ NCP G
Sbjct: 379 PFAAAQQRRTIKCWNCGKEGHSARQCRAPRRQG------CWKCGKPGHIMTNCPDRQAG 431
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens
GN=ZCCHC13 PE=2 SV=1
Length = 166
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 77 GESCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQ 136
G C+ C HIAK C + E+ + C C R GH ++C + ++ CY+CG+
Sbjct: 64 GNICYNCGRSGHIAKDCK-DPKRERRQHCYTCGRLGHLARDCDRQKEQK-----CYSCGK 117
Query: 137 AGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNC 171
GH C Q C+ C E GH++ NC
Sbjct: 118 LGHIQKDCAQ---------VKCYRCGEIGHVAINC 143
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 105 CLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQ 164
C C G KNC + +CYNCG++GH C P ++ + C+ C
Sbjct: 47 CYCCGESGRNAKNCVLLGN------ICYNCGRSGHIAKDCKDPKRE---RRQHCYTCGRL 97
Query: 165 GHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCP 199
GHL+++C + C CG + H+ +DC
Sbjct: 98 GHLARDCDRQKEQK------CYSCGKLGHIQKDCA 126
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 120 SKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNC--PQNAHG 177
S+ T + CY CG++G + C + G C+ C GH++K+C P+
Sbjct: 36 SQCGSTTLSYTCYCCGESGRNAKNC---VLLGNI----CYNCGRSGHIAKDCKDPKRERR 88
Query: 178 IYPKGGCCKICGGVTHLARDC 198
+ C CG + HLARDC
Sbjct: 89 QH-----CYTCGRLGHLARDC 104
>sp|O92956|POL_RSVSB Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain
Schmidt-Ruppin B) GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 44.7 bits (104), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 KLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNC 171
+LCY CG GH AQCP+ + G ++ C +C GH +K C
Sbjct: 507 RLCYTCGSPGHYQAQCPKKRKSGNSR-ERCQLCDGMGHNAKQC 548
Score = 35.0 bits (79), Expect = 0.63, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 103 KICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQC 144
++C C GH CP K S + C C GH+ QC
Sbjct: 507 RLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQC 548
Score = 31.6 bits (70), Expect = 7.6, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 151 GGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDC 198
GG C+ C GH CP+ + C++C G+ H A+ C
Sbjct: 502 GGRARRLCYTCGSPGHYQAQCPKKRKSGNSRER-CQLCDGMGHNAKQC 548
>sp|P12502|POL_SIVS4 Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate
F236/smH4) GN=gag-pol PE=3 SV=2
Length = 1449
Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIY 179
C+NCG+ GHS QC P + G C+ C + GH+ CP+ G +
Sbjct: 394 CWNCGKEGHSAKQCRAPRRQG------CWKCGKTGHVMAKCPERQAGFF 436
Score = 32.7 bits (73), Expect = 3.2, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 149 QDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPNKGIQGFTA 208
Q G K C+ C ++GH +K C P+ C CG H+ CP + F A
Sbjct: 385 QKGQRKTIKCWNCGKEGHSAKQCRA------PRRQGCWKCGKTGHVMAKCPERQAGFFRA 438
>sp|P19505|POL_SIVSP Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate
PBj14/BCL-3) GN=gag-pol PE=1 SV=2
Length = 1449
Score = 44.3 bits (103), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIY 179
C+NCG+ GHS QC P + G C+ C + GH+ CP+ G +
Sbjct: 394 CWNCGKEGHSARQCRAPRRQG------CWKCGKAGHVMAKCPERQAGFF 436
Score = 35.0 bits (79), Expect = 0.60, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 140 SLAQCPQPL----QDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLA 195
+L Q P P Q G K C+ C ++GH ++ C P+ C CG H+
Sbjct: 372 ALTQGPLPFAAVQQKGQRKIIKCWNCGKEGHSARQCRA------PRRQGCWKCGKAGHVM 425
Query: 196 RDCPNKGIQGFTA 208
CP + F A
Sbjct: 426 AKCPERQAGFFRA 438
>sp|P18042|POL_HV2G1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate Ghana-1) GN=gag-pol PE=1 SV=4
Length = 1464
Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCK 186
C+NCG+ GHS QC P + G C+ C + GH+ CP+ G G K
Sbjct: 392 CWNCGKEGHSARQCRAPRRQG------CWKCGKTGHVMAKCPERQAGFLRDGSMGK 441
>sp|P03354|POL_RSVP Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Prague C)
GN=gag-pro-pol PE=1 SV=2
Length = 1603
Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 130 LCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNC 171
LCY CG GH AQCP+ + G ++ C +C GH +K C
Sbjct: 508 LCYTCGSPGHYQAQCPKKRKSGNSR-ERCQLCNGMGHNAKQC 548
Score = 34.7 bits (78), Expect = 0.90, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 104 ICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQC 144
+C C GH CP K S + C C GH+ QC
Sbjct: 508 LCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQC 548
Score = 33.1 bits (74), Expect = 2.6, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 151 GGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPNK-GIQG 205
GG C+ C GH CP+ + C++C G+ H A+ C + G QG
Sbjct: 502 GGRARGLCYTCGSPGHYQAQCPKKRKSGNSRER-CQLCNGMGHNAKQCRKRDGNQG 556
>sp|Q04095|POL_RSVSA Gag-Pro-Pol polyprotein OS=Avian leukosis virus RSA GN=gag-pro-pol
PE=3 SV=2
Length = 1603
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 130 LCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNC 171
LCY CG GH AQCP+ + G ++ C +C GH +K C
Sbjct: 508 LCYTCGSPGHYQAQCPKKRKSGNSR-ERCQLCDGMGHNAKQC 548
Score = 34.3 bits (77), Expect = 1.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 104 ICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQC 144
+C C GH CP K S + C C GH+ QC
Sbjct: 508 LCYTCGSPGHYQAQCPKKRKSGNSRERCQLCDGMGHNAKQC 548
Score = 32.7 bits (73), Expect = 3.4, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 151 GGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPNK-GIQG 205
GG C+ C GH CP+ + C++C G+ H A+ C + G QG
Sbjct: 502 GGRARGLCYTCGSPGHYQAQCPKKRKSGNSRER-CQLCDGMGHNAKQCRRRDGNQG 556
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNC 171
CYNCG+ GH QCP+P + C C + GHL+K+C
Sbjct: 404 CYNCGKFGHMQRQCPEPRK------MRCLKCGKPGHLAKDC 438
Score = 35.4 bits (80), Expect = 0.42, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 143 QCPQPLQDGGTKF-----ASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARD 197
Q +Q GG + C+ C + GH+ + CP+ P+ C CG HLA+D
Sbjct: 384 QSQNMMQQGGQRGRPRPPVKCYNCGKFGHMQRQCPE------PRKMRCLKCGKPGHLAKD 437
Query: 198 C 198
C
Sbjct: 438 C 438
>sp|P18096|POL_HV2BE Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate BEN) GN=gag-pol PE=3 SV=4
Length = 1550
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 132 YNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKG 182
+NCG+ GHS QC P + G C+ C + GH+ NCP+ G + G
Sbjct: 392 WNCGKEGHSARQCRAPRRQG------CWKCGKPGHIMANCPERQAGFFRVG 436
Score = 33.1 bits (74), Expect = 2.2, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 108 CRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQ 146
C + GH+ + C + + C+ CG+ GH +A CP+
Sbjct: 394 CGKEGHSARQCRAPRRQG-----CWKCGKPGHIMANCPE 427
>sp|P20876|POL_HV2ST Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate ST) GN=gag-pol PE=3 SV=3
Length = 1463
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHG 177
C+NCG+ GHS QC P + G C+ C + GH+ CP+ G
Sbjct: 391 CWNCGKEGHSARQCRAPRRQG------CWKCGKAGHIMAKCPERQAG 431
>sp|Q8N3Z6|ZCHC7_HUMAN Zinc finger CCHC domain-containing protein 7 OS=Homo sapiens
GN=ZCCHC7 PE=1 SV=2
Length = 543
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 101 KNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPL 148
KN IC C +RGH KNCP + C+ C + GH L CP PL
Sbjct: 239 KNIICRNCDKRGHLSKNCPL----PRKVRRCFLCSRRGHLLYSCPAPL 282
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 35/126 (27%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDET-------------- 125
C C + H++K+CP+ K + C +C RRGH L +CP+ E
Sbjct: 243 CRNCDKRGHLSKNCPLP---RKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFR 299
Query: 126 -ESTKLCYNCGQAGHSLAQCPQPLQDGG-----------------TKFASCFICKEQGHL 167
K C C GH C + + + A C+ C ++GH
Sbjct: 300 HSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHY 359
Query: 168 SKNCPQ 173
CP+
Sbjct: 360 GHECPE 365
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 130 LCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCP 172
+C NC + GH CP P K CF+C +GHL +CP
Sbjct: 242 ICRNCDKRGHLSKNCPLP-----RKVRRCFLCSRRGHLLYSCP 279
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 151 GGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPNKGIQGF 206
G K CF C ++GHL++NC P+ G C CG H +DC N+G Q F
Sbjct: 388 GIRKPIKCFNCGKEGHLARNCKA------PRRGGCWKCGQEGHQMKDCKNEGRQFF 437
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGG 190
C+NCG+ GH C P + G C+ C ++GH K+C + +
Sbjct: 395 CFNCGKEGHLARNCKAPRRGG------CWKCGQEGHQMKDCKNEGRQFFREE-----LVS 443
Query: 191 VTHLARDCP---NKGIQGFTASSKQAMAGGERPTGQVTKFTSGDD 232
+ R P NK A+ + ++GGE TG+ G+D
Sbjct: 444 LQRETRKLPPDNNKERAHSPATRELWVSGGEEHTGEGDAGEPGED 488
Score = 32.7 bits (73), Expect = 2.7, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 105 CLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQC 144
C C + GH +NC + C+ CGQ GH + C
Sbjct: 395 CFNCGKEGHLARNCKAPRRGG-----CWKCGQEGHQMKDC 429
>sp|P17756|GAG_HV2D1 Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate D194) GN=gag PE=3 SV=4
Length = 521
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKG 182
C+NCG+ GHS QC P + G C+ C + GH+ NCP+ G G
Sbjct: 391 CWNCGKEGHSAKQCRAPRRQG------CWKCGKSGHIMANCPERQAGFLGMG 436
>sp|Q76634|POL_HV2UC Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
B (isolate UC1) GN=gag-pol PE=3 SV=3
Length = 1471
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 128 TKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGI 178
T C+NCG+ GH+ QC P + G C+ C +QGH+ CP+ G
Sbjct: 387 TVTCWNCGKVGHTAKQCRAPRRQG------CWKCGKQGHIMSKCPERQAGF 431
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 105 CLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQ 146
C C + GHT K C + + C+ CG+ GH +++CP+
Sbjct: 390 CWNCGKVGHTAKQCRAPRRQG-----CWKCGKQGHIMSKCPE 426
>sp|P69732|GAG_EIAVY Gag polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=gag PE=1 SV=1
Length = 486
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 111 RGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKN 170
+G LK P K +T CYNCG+ GH +QC P CF CK+ GH SK
Sbjct: 368 KGGALKGGPLKAAQT-----CYNCGKPGHLSSQCRAP--------KVCFKCKQPGHFSKQ 414
Query: 171 C 171
C
Sbjct: 415 C 415
>sp|P69731|GAG_EIAVC Gag polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=gag PE=3 SV=1
Length = 486
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 111 RGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKN 170
+G LK P K +T CYNCG+ GH +QC P CF CK+ GH SK
Sbjct: 368 KGGALKGGPLKAAQT-----CYNCGKPGHLSSQCRAP--------KVCFKCKQPGHFSKQ 414
Query: 171 C 171
C
Sbjct: 415 C 415
>sp|P69730|GAG_EIAV9 Gag polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=gag PE=1 SV=1
Length = 486
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
Query: 111 RGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKN 170
+G LK P K +T CYNCG+ GH +QC P CF CK+ GH SK
Sbjct: 368 KGGALKGGPLKAAQT-----CYNCGKPGHLSSQCRAP--------KVCFKCKQPGHFSKQ 414
Query: 171 C 171
C
Sbjct: 415 C 415
>sp|P05962|POL_HV2NZ Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate NIH-Z) GN=gag-pol PE=3 SV=3
Length = 1461
Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 25/121 (20%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGI------------ 178
C+NCG+ GHS Q P + G C+ C + GH+ NCP G
Sbjct: 389 CWNCGKEGHSARQWSAPRRQG------CWKCGKSGHVMANCPDRQAGFLRDWPLGKEGPQ 442
Query: 179 YPKGGCCKICGGVTHLARDCPNKGIQGFTASSKQAMAGGERPTGQ-----VTKFTSGDDL 233
P+G G T+ + G G ++++ G ER T Q +T F +G D
Sbjct: 443 LPRGP--SPAGANTNSTPIGSSSGPTGEIYAARKKAKGAERETVQGSDRGLTAFRAGRDT 500
Query: 234 L 234
+
Sbjct: 501 M 501
>sp|Q76633|GAG_HV2UC Gag polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate UC1) GN=gag PE=3 SV=3
Length = 521
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 128 TKLCYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKG 182
T C+NCG+ GH+ QC P + G C+ C +QGH+ CP+ G G
Sbjct: 387 TVTCWNCGKVGHTAKQCRAPRRQG------CWKCGKQGHIMSKCPERQAGFLGLG 435
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 105 CLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQ 146
C C + GHT K C + + C+ CG+ GH +++CP+
Sbjct: 390 CWNCGKVGHTAKQCRAPRRQG-----CWKCGKQGHIMSKCPE 426
>sp|Q74119|GAG_HV2KR Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate KR) GN=gag PE=3 SV=3
Length = 521
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKG 182
C+NCG+ GHS QC P + G C+ C + GH+ NCP+ G G
Sbjct: 391 CWNCGKDGHSARQCRAPRRQG------CWKCGKSGHVMANCPERQAGFLGIG 436
>sp|P12450|GAG_HV2SB Gag polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate SBLISY) GN=gag PE=3 SV=3
Length = 520
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 131 CYNCGQAGHSLAQCPQPLQDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKG 182
C+NCG+ GHS QC P + G C+ C + GH+ NCP G G
Sbjct: 390 CWNCGKEGHSARQCRAPRRQG------CWKCGKSGHIMANCPDRQAGFLGLG 435
>sp|P40507|AIR1_YEAST Protein AIR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=AIR1 PE=1 SV=1
Length = 360
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 16/80 (20%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPS-------------KNDETE 126
C C A H CP K W+K C +C + H+ + CPS + D
Sbjct: 114 CTNCNANGHYKSQCPHK--WKK-VFCTLCNSKRHSRERCPSIWRSYLLKTKDANQGDFDF 170
Query: 127 STKLCYNCGQAGHSLAQCPQ 146
T CYNCG AGH C +
Sbjct: 171 QTVFCYNCGNAGHFGDDCAE 190
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 39/115 (33%), Gaps = 22/115 (19%)
Query: 87 EHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQ 146
+H ++HCP K IC C GH CP K + C C HS +CP
Sbjct: 102 DHYSQHCP------KAIICTNCNANGHYKSQCPHKWKKV----FCTLCNSKRHSRERCPS 151
Query: 147 PLQD----------GGTKFAS--CFICKEQGHLSKNCPQNAHGIYPKGGCCKICG 189
+ G F + C+ C GH +C + P CG
Sbjct: 152 IWRSYLLKTKDANQGDFDFQTVFCYNCGNAGHFGDDCAERRSSRVPNTDGSAFCG 206
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 29/118 (24%)
Query: 105 CLVCRRRGHTLKNCPSK-------NDETESTK-----LCYNCGQAGHSLAQCPQPLQDGG 152
C C +RGH +NCP D+ S +C NC GH +QCP
Sbjct: 76 CNNCSQRGHLKRNCPHVICTYCGFMDDHYSQHCPKAIICTNCNANGHYKSQCPHKW---- 131
Query: 153 TKFASCFICKEQGHLSKNCPQ------------NAHGIYPKGGCCKICGGVTHLARDC 198
K C +C + H + CP N + C CG H DC
Sbjct: 132 -KKVFCTLCNSKRHSRERCPSIWRSYLLKTKDANQGDFDFQTVFCYNCGNAGHFGDDC 188
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 92 HCPMKAEWEK--NKICLVCRRRGHTLKNCPSKNDETESTKLCYNCGQAGHSLAQCPQPLQ 149
HC + A+ E+ NK + T + P +E + +L LA L+
Sbjct: 263 HCLIMADTEEKVNKAKKLIHNIIETAASIPEGQNELKRNQL--------RELAALNGTLR 314
Query: 150 DGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPNKGIQGFTAS 209
D + +C C + GH +CP+ + Y C++CG H+ARDCP++ AS
Sbjct: 315 D--DENQACQNCGQIGHRKYDCPEKQN--YTANIICRVCGNAGHMARDCPDR---QRGAS 367
Query: 210 SKQAMAGGERPTGQVTKFTSGDDLLDDF 237
+ G R G++ GD + ++
Sbjct: 368 WRNDGPGAGRTAGRIGSSGGGDAVDREY 395
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 78 ESCFICKAKEHIAKHCPMKAEWEKNKICLVCRRRGHTLKNCPS-------KNDETESTKL 130
++C C H CP K + N IC VC GH ++CP +ND + +
Sbjct: 319 QACQNCGQIGHRKYDCPEKQNYTANIICRVCGNAGHMARDCPDRQRGASWRNDGPGAGRT 378
Query: 131 CYNCGQAGHSLA---QCPQPLQD-GGTKFASCFICKEQGHLSKNCPQNAHG 177
G +G A + Q +Q+ GGT A I G S N P +G
Sbjct: 379 AGRIGSSGGGDAVDREYEQLMQELGGTGAAPARIEAGPGSFS-NGPSGGNG 428
>sp|Q94C69|CSP3_ARATH Cold shock domain-containing protein 3 OS=Arabidopsis thaliana
GN=CSP3 PE=2 SV=1
Length = 301
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 48/142 (33%), Gaps = 23/142 (16%)
Query: 80 CFICKAKEHIAKHC------PMKAEWEKNKICLVCRRRGHTLKNCPSKNDETESTKL--- 130
C++C H A+ C + C C GH K+C +
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGR 191
Query: 131 ------CYNCGQAGHSLAQCPQPLQDGGTKFAS-CFICKEQGHLSKNC----PQNAHGIY 179
CY CG GH C Q S C+ C GH++K C P G
Sbjct: 192 GSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGG 251
Query: 180 PKGGCCKICGGVTHLARDCPNK 201
C CGG HLARDC +
Sbjct: 252 RA---CYECGGTGHLARDCDRR 270
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 25/151 (16%)
Query: 76 PGESCFICKAKEHIAKHCP-----------MKAEWEKNKICLVCRRRGHTLKNC-----P 119
G +CF C H+AK C C +C GH ++C
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151
Query: 120 SKNDETESTKLCYNCGQAGHSLAQC--------PQPLQDGGTKFASCFICKEQGHLSKNC 171
+ + CY+CG+ GH C G+ C++C GH +++C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Query: 172 PQ-NAHGIYPKGGCCKICGGVTHLARDCPNK 201
Q + G C CGGV H+A+ C +K
Sbjct: 212 RQNGGGNVGGGGSTCYTCGGVGHIAKVCTSK 242
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 16/137 (11%)
Query: 80 CFICKAKEHIAKHCPMKAEWEKNKI----------CLVCRRRGHTLKNC--PSKNDETES 127
C+ C H+AK C + + C +C GH ++C +
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 128 TKLCYNCGQAGHSLAQCPQPL-QDGGTKFASCFICKEQGHLSKNCPQNAHGIYPKGGC-- 184
CY CG GH C + GG +C+ C GHL+++C + G GG
Sbjct: 223 GSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSN 282
Query: 185 -CKICGGVTHLARDCPN 200
C ICG H AR+C +
Sbjct: 283 KCFICGKEGHFARECTS 299
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 121 KNDETESTKLCYNCGQAGHSLAQCP---------QPLQDGGTKFASCFICKEQGHLSKNC 171
+N S C+NCG+ GH C C++C + GH +++C
Sbjct: 86 ENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDC 145
Query: 172 PQNAHGIYPKGGC----CKICGGVTHLARDC 198
Q+ G GG C CG V HLA+DC
Sbjct: 146 RQSGGGNSGGGGGGGRPCYSCGEVGHLAKDC 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,804,755
Number of Sequences: 539616
Number of extensions: 4998560
Number of successful extensions: 22784
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 356
Number of HSP's that attempted gapping in prelim test: 19333
Number of HSP's gapped (non-prelim): 2305
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)