BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023489
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9WUU9|MCM3A_MOUSE 80 kDa MCM3-associated protein OS=Mus musculus GN=Mcm3ap PE=2 SV=2
Length = 1971
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 22/236 (9%)
Query: 33 SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTK 92
++TR +R+D+ Q++ + +++ EK +FH+ H + C S +N E +TK
Sbjct: 718 NRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFM---CEEPMSSFDAKINNENMTK 774
Query: 93 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSK 152
L SL +Y+ R+ EAEF+ + VLL+L+ G+ L + P + S
Sbjct: 775 CLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLNLNK-----GDILREVQQFHPD-VRNSP 828
Query: 153 EMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP 212
E+ FA QA N+ RF V + ASYL C++ Y +++R AL + N Y +
Sbjct: 829 EVNFAVQAFAALNSNNFVRFFKLVQS-ASYLNACLLHCYFNQIRKDALRAL-NVAYTVST 886
Query: 213 -----YPLGHLSKVLMMEES-DVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 262
+PL + ++L+ +S + F N +GL V + + ++ F P+G
Sbjct: 887 QRSTVFPLDGVVRMLLFRDSEEATNFLNYHGLT-----VADGCVELNRSAFLEPEG 937
>sp|O60318|MCM3A_HUMAN 80 kDa MCM3-associated protein OS=Homo sapiens GN=MCM3AP PE=1 SV=2
Length = 1980
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 22/236 (9%)
Query: 33 SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTK 92
++TR +R+D+ Q++ + +++ EK +FH+ H + C S +N E +TK
Sbjct: 725 NRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFM---CEEPMSSFDAKINNENMTK 781
Query: 93 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSK 152
L SL +Y+ R+ EAEF+ + VLL L+ G+ L + P+ + S
Sbjct: 782 CLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLSLNK-----GDILREVQQFHPA-VRNSS 835
Query: 153 EMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP 212
E+ FA QA N+ RF V + ASYL C++ Y ++R AL + N Y +
Sbjct: 836 EVKFAVQAFAALNSNNFVRFFKLVQS-ASYLNACLLHCYFSQIRKDALRAL-NFAYTVST 893
Query: 213 -----YPLGHLSKVLMMEE-SDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 262
+PL + ++L+ + + F +GL V + + ++ F P+G
Sbjct: 894 QRSTIFPLDGVVRMLLFRDCEEATDFLTCHGLT-----VSDGCVELNRSAFLEPEG 944
>sp|Q9U3V9|XMAS2_DROME Protein xmas-2 OS=Drosophila melanogaster GN=xmas-2 PE=1 SV=3
Length = 1370
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 31/244 (12%)
Query: 33 SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTK 92
+TRS+R+++ Q + + A+ + E+ +FH+ +L + S S + N E LTK
Sbjct: 296 DRTRSIRKEITQQELCSLGAVKLVEQCARFHIHCAARLVDADPSVFDSKI---NAENLTK 352
Query: 93 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHL-DSNGQPVGESLSLW-FRHVPSPIIK 150
L +L +Y R KEAEFR + VLL+L D+N LW +P+ +
Sbjct: 353 CLQTLKYMYHDLRIKGVPCPKEAEFRGYIVLLNLADAN--------FLWDIGQLPAELQS 404
Query: 151 SKEMWFARQALRYF---QMGNYRRFLSTVA-AEASYLQYCIIEPYIDEVRSLALCCIHNC 206
E+ RQA++++ Q N+ RF +A + SYL CI+ Y +R L L +
Sbjct: 405 CPEV---RQAIQFYLALQDTNFVRFFQLLADKDTSYLSACILVNYFTRLRVLGLHRLIQA 461
Query: 207 CY-----KLHPYPLGHLSKVL-MMEESDVELFCNAYGLQTCIDEVGNKLLP---TKQTTF 257
++ PL +++++L E + F YGLQ I+E G +L T +T +
Sbjct: 462 YRSPRKDEVSSLPLSYIAELLSFASEQEAADFVQHYGLQ--INEAGRVVLSRMHTVETEY 519
Query: 258 CRPK 261
P+
Sbjct: 520 KLPR 523
>sp|Q9USI4|SAC32_SCHPO SAC3 family protein 2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPCC70.06 PE=3 SV=1
Length = 458
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 113/257 (43%), Gaps = 39/257 (15%)
Query: 34 QTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKA 93
+TR+VRQD +Q+ + ++ E I +FH+IS H+L + + S +EQL+K+
Sbjct: 161 RTRAVRQDFSVQSSFSQDSVYCHELIARFHIISLHELAHTPNFS-----RQQEIEQLSKS 215
Query: 94 LTSLYN---LYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQP-VGESLSLWFRHV-PSPI 148
+ LY LY+ K EAEFR++ VLL L G P VG W V PI
Sbjct: 216 MEILYTLGQLYDYMHLRKEHCTHEAEFRAYMVLLSL---GDPSVGLDTLSWPDFVFKKPI 272
Query: 149 IKS--KEMWFARQALRYFQMGN------------------YRRFLSTVAA-EASYLQYCI 187
+K+ K A++ N Y RF ++ SYL C+
Sbjct: 273 VKTSLKLYSLAQRNNHTITTSNSISLSLVSSFNTEATSNLYTRFFKIASSFRVSYLMGCL 332
Query: 188 IEPYIDEVRSLALCCIHNCCYKLHP-YPLGHLSKVLMMEESDVELF--CNAYGLQT-CID 243
++ ++ +R+ AL + C H P L K+L D EL C +GL+ I
Sbjct: 333 LDLFVPSIRTGALKAMKKCYLSAHSNIPFKDLMKILAATSED-ELVQCCKMHGLKIEYIG 391
Query: 244 EVGNKLLPTKQTTFCRP 260
E + ++ ++T P
Sbjct: 392 EQPSAVVLNRKTVITEP 408
>sp|O74889|SAC31_SCHPO SAC3 family protein 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPCC576.05 PE=1 SV=1
Length = 1024
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 32/232 (13%)
Query: 33 SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTK 92
+TRS+RQD +QN + A+ E+I ++H++ H+L C S +EQL K
Sbjct: 195 DRTRSIRQDFTLQNCRDLDAVACHERIARYHILCIHQL---CEKKQFSAQQ--EVEQLRK 249
Query: 93 A-LTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS 151
L SL Y+ R K E EFRS+ ++ HL + V +S L P I
Sbjct: 250 GILQSLCEFYDDLRKVKIRCPNEPEFRSYAIITHL-RDPDVVRQSQIL-----PIEIFDD 303
Query: 152 KEMWFARQALRYFQMGN-----------------YRRFLSTVAAEA-SYLQYCIIEPYID 193
+ + A + Q N Y RF V + A +YL C++E +
Sbjct: 304 QRVQLALRLSALAQKNNERVGHILPRNTEACPNLYTRFFKLVQSPAVTYLMACLLESHFM 363
Query: 194 EVRSLALCCIHNCCYKLHP-YPLGHLSKVLMMEESD-VELFCNAYGLQTCID 243
+R AL + H +P G L ++L + + F YGL+ D
Sbjct: 364 SIRKGALKAMRKAFMSAHANFPCGDLKRILHFDTVEQAASFSRYYGLEVSDD 415
>sp|P46674|SAC3_YEAST Nuclear mRNA export protein SAC3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SAC3 PE=1 SV=2
Length = 1301
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 24/220 (10%)
Query: 36 RSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALT 95
RS+RQD QN +A++ E+IV+ H++ H + S S+ LEQL K+L
Sbjct: 288 RSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNVEFSLQQ----ELEQLHKSLI 343
Query: 96 SLYNLYEANRSSKPIHEKEAEFRSFYVLLHL-----DSNGQPVGE--------SLSLWFR 142
+L +Y+ RSS EAEFR++ +L + D N Q + + ++L FR
Sbjct: 344 TLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQYDENIQRLPKHIFQDKLVQMALCFR 403
Query: 143 HVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA-SYLQYCIIEPYIDEVRSLALC 201
V S ++ + + F Y RF + + + L ++ ++ ++R AL
Sbjct: 404 RVISNSAYTERGFVKTENCLNF----YARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALR 459
Query: 202 CIHNCCYKLH-PYPLGHLSKVLMMEE-SDVELFCNAYGLQ 239
+ + K H P P +L +L+ ++ FCN Y ++
Sbjct: 460 ALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIE 499
>sp|P37047|CDAR_ECOLI Carbohydrate diacid regulator OS=Escherichia coli (strain K12)
GN=cdaR PE=1 SV=2
Length = 385
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 94 LTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKE 153
L SL ++AN ++P+ L +D+NG + +L+ WFRH P+ SK
Sbjct: 295 LDSLRGDWQANELARPLAR----------LKTMDNNG-LLRRTLAAWFRHNVQPLATSKA 343
Query: 154 MWFARQALRY 163
++ R L Y
Sbjct: 344 LFIHRNTLEY 353
>sp|Q1IYA4|RIMM_DEIGD Ribosome maturation factor RimM OS=Deinococcus geothermalis (strain
DSM 11300) GN=rimM PE=3 SV=1
Length = 178
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 76 SSSISPLHYLNLEQLT-----KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNG 130
+ +++P L+L +T +AL L N+Y A+ P+ E + L D+NG
Sbjct: 53 TEALAPGAVLHLAGITSREAAEALRGL-NVYAADADLPPLEEGSYYYHELRGLPVRDANG 111
Query: 131 QPVGESLSLW 140
QP+GE +W
Sbjct: 112 QPLGEVRDVW 121
>sp|A5FC71|UXUA_FLAJ1 Mannonate dehydratase OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=uxuA PE=3 SV=1
Length = 394
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 180 ASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP 212
+Y+QY IE Y + +R+LALC I CY P
Sbjct: 85 GNYIQY--IENYKESIRNLALCGIKCVCYNFMP 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,122,453
Number of Sequences: 539616
Number of extensions: 3805232
Number of successful extensions: 9947
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9927
Number of HSP's gapped (non-prelim): 13
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)