Query 023489
Match_columns 281
No_of_seqs 119 out of 452
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 07:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_A Nuclear mRNA export pro 100.0 2.1E-59 7E-64 434.8 23.7 242 10-267 19-280 (316)
2 4b0z_A RPN12, 26S proteasome r 100.0 3.4E-29 1.2E-33 222.7 19.6 191 27-249 23-225 (229)
3 4b4t_T 26S proteasome regulato 100.0 5.5E-29 1.9E-33 226.7 14.5 191 26-241 19-229 (274)
4 1rz4_A Eukaryotic translation 98.6 1.5E-06 5E-11 76.6 14.9 167 49-250 22-189 (226)
5 3txn_A 26S proteasome regulato 95.9 0.094 3.2E-06 49.5 12.9 125 114-246 219-354 (394)
6 4b4t_O 26S proteasome regulato 93.9 0.73 2.5E-05 43.0 12.8 120 114-240 209-338 (393)
7 3t5x_A PCI domain-containing p 92.7 0.31 1E-05 41.6 7.4 103 158-260 84-199 (203)
8 4b4t_R RPN7, 26S proteasome re 92.6 0.32 1.1E-05 45.8 8.2 93 151-247 283-386 (429)
9 3chm_A COP9 signalosome comple 85.4 2.7 9.4E-05 34.7 7.6 79 155-241 60-143 (169)
10 4b4t_Q 26S proteasome regulato 84.0 22 0.00076 31.4 15.1 81 150-234 292-378 (434)
11 3t5v_B Nuclear mRNA export pro 82.1 6.1 0.00021 37.7 9.5 84 141-224 278-374 (455)
12 4b4t_P 26S proteasome regulato 71.4 45 0.0015 31.2 12.2 80 152-234 291-381 (445)
13 1ufm_A COP9 complex subunit 4; 65.6 8.3 0.00029 28.0 4.5 49 193-244 14-66 (84)
14 4b4t_S RPN3, 26S proteasome re 64.0 8.8 0.0003 37.3 5.6 70 158-230 346-420 (523)
15 2jya_A AGR_C_3324P, uncharacte 50.5 7.5 0.00026 29.7 2.0 24 221-244 55-79 (106)
16 2lju_A Putative oxidoreductase 49.2 11 0.00037 29.0 2.7 24 221-244 63-87 (108)
17 3f2g_A Alkylmercury lyase; MER 31.1 1E+02 0.0036 26.3 6.4 50 194-248 22-71 (220)
18 3oio_A Transcriptional regulat 31.0 1.3E+02 0.0043 21.8 6.3 62 168-240 39-102 (113)
19 3oou_A LIN2118 protein; protei 29.7 1.4E+02 0.0049 21.3 6.3 63 167-240 36-100 (108)
20 2k9s_A Arabinose operon regula 29.1 1.5E+02 0.0051 21.2 6.3 62 168-240 36-99 (107)
21 3lsg_A Two-component response 28.1 1.6E+02 0.0054 20.8 6.3 62 168-240 35-98 (103)
22 3mn2_A Probable ARAC family tr 27.4 1.7E+02 0.0058 20.8 6.7 64 168-240 34-99 (108)
23 3mkl_A HTH-type transcriptiona 25.1 1.7E+02 0.006 21.3 6.2 47 191-241 54-102 (120)
24 3e21_A HFAF1, FAS-associated f 23.9 78 0.0027 20.1 3.3 26 215-240 9-35 (45)
25 1bl0_A Protein (multiple antib 23.6 1.9E+02 0.0067 21.4 6.3 61 169-241 44-107 (129)
26 2eap_A Lymphocyte cytosolic pr 23.2 24 0.00083 26.0 0.8 41 213-261 22-65 (90)
27 2heo_A Z-DNA binding protein 1 21.5 1.8E+02 0.0063 19.2 5.4 45 194-241 10-57 (67)
No 1
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-59 Score=434.78 Aligned_cols=242 Identities=22% Similarity=0.312 Sum_probs=207.2
Q ss_pred HHHHHHHhccCCCCccccccccccchhhhhhhhhHhccCChhHHHHHHHHHHHHHHhhhhhhccCCCCCCChhhhhcHHH
Q 023489 10 PLLLKSFAERCRPRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQ 89 (281)
Q Consensus 10 ~~ll~~~~~~~~~~~~~Y~F~i~DRlRaIRQDltvQ~i~~~~~i~vlE~~aRf~i~s~~~L~~~~~~~~f~~~~~~n~eq 89 (281)
.||++.+..+ +.++|+| ||||||||||||||||+.+++||+|||+||||||+|.|+||+.+. +| |+++|.+|
T Consensus 19 ~yL~~~~~~~---~~~~y~f-i~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~~~~--~f--~~~~~~eQ 90 (316)
T 3t5v_A 19 DYIVDNLLTT---LPESEGF-LWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNV--EF--SLQQELEQ 90 (316)
T ss_dssp HHHHHHTGGG---TTTCHHH-HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHSCC--CC--CHHHHHHH
T ss_pred HHHHHHHHhc---chhhhHH-HHhhhhhhccCceeeccCCchHHHHHHHHHHHHHHHHHHHhhCCC--cc--chHHHHHH
Confidence 3455554443 5689999 999999999999999999999999999999999999999998753 36 68999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhccCCCCchhhhHHHHhhhCChhhhcChhHHHHHHHHHHHH----
Q 023489 90 LTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQ---- 165 (281)
Q Consensus 90 l~qcl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~i~~~p~v~~Al~i~~a~~---- 165 (281)
+++||++|+++|++.++.|..||||+||+||+||+++++++. ...+.++|++++++|.||+|+++.+|+.
T Consensus 91 l~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~~~~------~~~l~~Lp~~i~~~p~Vq~AL~l~~a~~~~~~ 164 (316)
T 3t5v_A 91 LHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQY------DENIQRLPKHIFQDKLVQMALCFRRVISNSAY 164 (316)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTCTHH------HHHHTTSCHHHHTSHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhccchH------HHHHHhCCHHHhcCHHHHHHHHHHHHHHhccc
Confidence 999999999999999888889999999999999999987641 2346789999999999999999999996
Q ss_pred -----------hCcHHHHHHHHHh-CCchHHHHHHHHhHHHHHHHHHHHHHhhcCC--CCCcCHHHHHHHHcCCc-hHHH
Q 023489 166 -----------MGNYRRFLSTVAA-EASYLQYCIIEPYIDEVRSLALCCIHNCCYK--LHPYPLGHLSKVLMMEE-SDVE 230 (281)
Q Consensus 166 -----------~~Ny~rFF~L~~~-~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk--~~~~pl~~L~~~L~fdd-~e~~ 230 (281)
.|||+|||+|+++ ++|||++|+|+.||+++|..||++|++| |+ ..++|+++|+++|+|++ +|+.
T Consensus 165 ~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~ka-y~~k~~~~pl~~L~~~L~Fds~ee~~ 243 (316)
T 3t5v_A 165 TERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHT-LNKKHKPIPFIYLENMLLFNNRQEII 243 (316)
T ss_dssp CCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHH-SCTTCCCEEHHHHHHHTTCSSHHHHH
T ss_pred ccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCcCHHHHHHHhCCCCHHHHH
Confidence 4899999999975 3899999999999999999999999997 74 25899999999999985 7899
Q ss_pred HHHHHhCCeeeecCCCccc-cccCcccccCCcCccccc
Q 023489 231 LFCNAYGLQTCIDEVGNKL-LPTKQTTFCRPKGGLQNY 267 (281)
Q Consensus 231 ~fc~~~Gl~~~~d~~g~~~-~~~k~s~f~~p~~~~~~~ 267 (281)
+||++||++++.+ +|... ..+.++.|.+++.++++.
T Consensus 244 ~F~~~~gl~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~ 280 (316)
T 3t5v_A 244 EFCNYYSIEIING-DAADLKTLQHYSHKLSETQPLKKT 280 (316)
T ss_dssp HHHHHTTCCEETT-TEECGGGCCCSSSSCTTSCCCCCC
T ss_pred HHHHHCCCeEeCC-CCchHHhhcchhccccccCCCcch
Confidence 9999999999843 45433 124556666666555533
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.4e-29 Score=222.65 Aligned_cols=191 Identities=15% Similarity=0.228 Sum_probs=162.9
Q ss_pred cccccccchhhhhhhhhHhccC--------ChhHHHHHHHHHHHHHHhhhhhhccCCCCCCChhhhhcHHHHHHHHHHHH
Q 023489 27 HQMCGLSQTRSVRQDLIMQNIV--------NDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLY 98 (281)
Q Consensus 27 Y~F~i~DRlRaIRQDltvQ~i~--------~~~~i~vlE~~aRf~i~s~~~L~~~~~~~~f~~~~~~n~eql~qcl~~L~ 98 (281)
|+. .++.++.||+|||.|++. ...|.+|||.+||++|.. .+.+++++|+++|+
T Consensus 23 ~~~-~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~------------------~D~~~F~~~~~qLk 83 (229)
T 4b0z_A 23 WNA-CKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQT------------------CDIESFARYASQVI 83 (229)
T ss_dssp HHH-HHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHc------------------CCHHHHHHHHHHHH
Confidence 889 599999999999999983 246899999999999842 36788999999999
Q ss_pred HHHHhcccCCCCCCCHHHHHHHHHHHhccCCCCchhhhHHHHhhhCChh--hhcChhHHHHHHHHHHHHhCcHHHHHHHH
Q 023489 99 NLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSP--IIKSKEMWFARQALRYFQMGNYRRFLSTV 176 (281)
Q Consensus 99 ~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~--i~~~p~v~~Al~i~~a~~~~Ny~rFF~L~ 176 (281)
.+|.+.. ..++++.||.||+||+.+..++ +.+ +...+..+|++ +.++|.|++|+++.+|++.|||.+||+++
T Consensus 84 ~~Y~~~~---~~s~~~~e~~~~~LL~lL~~~~--~~e-f~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~ 157 (229)
T 4b0z_A 84 PFYHDSL---VPSSRMGLVTGLNLLYLLSENR--IAE-FHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMI 157 (229)
T ss_dssp HHHSSCC---CCCTTHHHHHHHHHHHHHHTTC--HHH-HHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHccC---CCCccHHHHHHHHHHHHHHcCC--chH-HHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998753 3578999999999999987665 233 34457778754 57899999999999999999999999998
Q ss_pred HhCCch-HHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCc-hHHHHHHHHhCCeeeecCCCccc
Q 023489 177 AAEASY-LQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYGLQTCIDEVGNKL 249 (281)
Q Consensus 177 ~~~~~~-L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd-~e~~~fc~~~Gl~~~~d~~g~~~ 249 (281)
+ ++|. ..+|+++.+++++|..++..|.+| |. ++|+++++++|+|++ +|+.+||+.+|..+. +|.++
T Consensus 158 ~-~~p~~~~~~~~~~l~~~vR~~~l~~i~ka-Y~--~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~---dg~i~ 225 (229)
T 4b0z_A 158 R-SCNFPEFSYFMKIVMSMVRNEIATCAEKV-YS--EIPLSNATSLLYLENTKETEKLAEERGWDIR---DGVIY 225 (229)
T ss_dssp H-TCCCGGGHHHHHHHHHHHHHHHHHHHHHH-CS--EEEHHHHHHHTTCSSHHHHHHHHHHHTCEEE---TTEEE
T ss_pred h-cCccchHHHHHHHHHHHHHHHHHHHHHHH-cC--CCCHHHHHHHhCCCCHHHHHHHHHHcCCEEe---CCEEe
Confidence 6 5654 459999999999999999999996 84 699999999999995 789999999999984 45543
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-29 Score=226.74 Aligned_cols=191 Identities=13% Similarity=0.164 Sum_probs=140.0
Q ss_pred ccccccccchhhhhhhhhHhccCCh--------------hHHHHHHHHHHHHHHhhhhhhccCCCCCCChhhhhcHHHHH
Q 023489 26 GHQMCGLSQTRSVRQDLIMQNIVND--------------KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLT 91 (281)
Q Consensus 26 ~Y~F~i~DRlRaIRQDltvQ~i~~~--------------~~i~vlE~~aRf~i~s~~~L~~~~~~~~f~~~~~~n~eql~ 91 (281)
-|+- ..+.+..++++||.|++-.+ .|.+|||.+||+.|. +.|.++|+
T Consensus 19 d~~~-~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~------------------~~D~~~F~ 79 (274)
T 4b4t_T 19 DYAA-CEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQ------------------TFNFDSFE 79 (274)
T ss_dssp -------------------------------------------CHHHHHHCCSS------------------CSSHHHHH
T ss_pred CHHH-HHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH------------------cCCHHHHH
Confidence 3678 49999999999999987421 266899999999873 24788999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhccCCCCchhhhHHHHhhhCC---hhhhcChhHHHHHHHHHHHHhCc
Q 023489 92 KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVP---SPIIKSKEMWFARQALRYFQMGN 168 (281)
Q Consensus 92 qcl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~---~~i~~~p~v~~Al~i~~a~~~~N 168 (281)
+|+++|+.+|.+.+..+..++|+.||.||+|||.+..++. .+ +...+..+| +++.++|.|++|+++.+|+..||
T Consensus 80 ~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~--~e-fh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGn 156 (274)
T 4b4t_T 80 NYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNT--TK-FHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGS 156 (274)
T ss_dssp HHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCS--TH-HHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCH--HH-HHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCC
Confidence 9999999999998766667899999999999999854432 22 223356676 46788999999999999999999
Q ss_pred HHHHHHHHHh--CCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCc-hHHHHHHHHhCCeee
Q 023489 169 YRRFLSTVAA--EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYGLQTC 241 (281)
Q Consensus 169 y~rFF~L~~~--~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd-~e~~~fc~~~Gl~~~ 241 (281)
|.+||+++++ ..+++.+|+|+.+++++|..|+..|.|| |+ ++|++.++++|+|++ +|+.+|++.+|.++.
T Consensus 157 Y~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~ka-Y~--~i~l~~~~~~L~F~s~~e~~~F~~~~gW~~~ 229 (274)
T 4b4t_T 157 YQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELS-YD--FLPLSNIKALLFFNNEKETEKFALERNWPIV 229 (274)
T ss_dssp SHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-CS--SCCHHHHHHHHTCCSHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--hcCHHHHHHHhCCCCHHHHHHHHHHcCCEEe
Confidence 9999999875 2357889999999999999999999996 85 699999999999995 789999999999884
No 4
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=98.56 E-value=1.5e-06 Score=76.63 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=115.7
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhccCCCCCCChhhhhcHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhccC
Q 023489 49 NDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDS 128 (281)
Q Consensus 49 ~~~~i~vlE~~aRf~i~s~~~L~~~~~~~~f~~~~~~n~eql~qcl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~ 128 (281)
|+..+.++|+-+.-... .+ .| | +.-.++ |..+|.-. +.....+..+..+|..|-+
T Consensus 22 np~~l~~le~Yv~qq~~-------~~---~Y--D-------~~anla-lLklYq~~-----p~~~~~~ii~~iLlk~L~~ 76 (226)
T 1rz4_A 22 NPENLATLERYVETQAK-------EN---AY--D-------LEANLA-VLKLYQFN-----PAFFQTTVTAQILLKALTN 76 (226)
T ss_dssp CGGGHHHHHHHHHHHHH-------HT---CC--C-------HHHHHH-HHHHHHHS-----GGGCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHh-------cc---cc--c-------HHHHHH-HHHHHhcC-----CcccchhHHHHHHHHHHHc
Confidence 56788888887765442 11 13 2 222233 34445432 2334578899988887754
Q ss_pred CCCchhhhHHHHhhhCChhhhcChhHHHHHHHHHHHHhCcHHHHHHHHHhCCchHHHHHHHHhHHHHHHHHHHHHHhhcC
Q 023489 129 NGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCY 208 (281)
Q Consensus 129 ~~~~~~~~l~~~l~~l~~~i~~~p~v~~Al~i~~a~~~~Ny~rFF~L~~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~y 208 (281)
... .+ +...+.-+|+++..+|.|+..+.+.+.+.+|||.+||+.+++ .+-+ ...+.-+.+.+|......+.+| |
T Consensus 77 ~p~--~D-F~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~-~~~l-~~~i~gf~dsIR~~I~~~i~~a-Y 150 (226)
T 1rz4_A 77 LPH--TD-FTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDE-NMDL-LEGITGFEDSVRKFICHVVGIT-Y 150 (226)
T ss_dssp TTS--TH-HHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCT-TCHH-HHTSTTHHHHHHHHHHHHHHHH-C
T ss_pred CCH--HH-HHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhc-ChhH-HHHHhHHHHHHHHHHHHHHHHH-H
Confidence 432 23 222334479999999999999999999999999999998753 2211 1223337788999999999996 8
Q ss_pred CCCCcCHHHHHHHHcCC-chHHHHHHHHhCCeeeecCCCcccc
Q 023489 209 KLHPYPLGHLSKVLMME-ESDVELFCNAYGLQTCIDEVGNKLL 250 (281)
Q Consensus 209 k~~~~pl~~L~~~L~fd-d~e~~~fc~~~Gl~~~~d~~g~~~~ 250 (281)
. ++|++.++++||+. +.++.+|++..|=++ |++|.+++
T Consensus 151 ~--sI~~~~la~lLg~~s~~el~~fi~~~GW~v--d~~g~I~~ 189 (226)
T 1rz4_A 151 Q--HIDRWLLAEMLGDLSDSQLKVWMSKYGWSA--DESGQIFI 189 (226)
T ss_dssp S--EECHHHHHHHTTSCCHHHHHHHHHHHTCEE--CC--CEEC
T ss_pred h--hCCHHHHHHHHcCCCHHHHHHHHHHCCCEE--CCCccEEe
Confidence 6 68999999999764 678999999999987 56676644
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.93 E-value=0.094 Score=49.46 Aligned_cols=125 Identities=9% Similarity=0.117 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhccCCCCchhhhHHHHhhhCC-hhhhcChhHHHHHHHHHHHHhCcHHHHHHHHHh------CCchHHHH
Q 023489 114 EAEFRSFYVLLHLDSNGQPVGESLSLWFRHVP-SPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA------EASYLQYC 186 (281)
Q Consensus 114 e~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~-~~i~~~p~v~~Al~i~~a~~~~Ny~rFF~L~~~------~~~~L~~c 186 (281)
...+.-|.+|..|-..+. .+ +...+.+ + ...+.+|.+.....+..|+..+++.+|++.+.. ..+++..+
T Consensus 219 ~~~~lkYlvL~aLl~~~r--~e-l~~~l~~-~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h 294 (394)
T 3txn_A 219 ALTSLKYMLLCKIMLGQS--DD-VNQLVSG-KLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAH 294 (394)
T ss_dssp HHHHHHHHHHHHHHTTCG--GG-HHHHHHS-HHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH--HH-HHHHhcc-ccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHH
Confidence 345668888888755442 11 2211110 0 011368999989999999999999999998864 24555443
Q ss_pred HHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchH----HHHHHHHhCCeeeecCCC
Q 023489 187 IIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD----VELFCNAYGLQTCIDEVG 246 (281)
Q Consensus 187 ll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e----~~~fc~~~Gl~~~~d~~g 246 (281)
+ ......||..+|..+.+. |. .++++.+++.|+.+.++ +..+...--+.-..|..+
T Consensus 295 ~-~~L~~~Ir~~~L~~i~~p-Ys--rIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~ 354 (394)
T 3txn_A 295 L-GTLYDTMLEQNLCRIIEP-YS--RVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGE 354 (394)
T ss_dssp H-HHHHHHHHHHHHHHHHTT-CS--EEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTT
T ss_pred H-HHHHHHHHHHHHHHHhHh-hc--eeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCC
Confidence 3 446678999999999994 86 69999999999998544 445555555544445433
No 6
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.73 Score=43.01 Aligned_cols=120 Identities=17% Similarity=0.213 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcc-CCC-CchhhhHHHHhhhCC--hhhhcChhHHHHHHHHHHHHhCcHHHHHHHHHh---CCchHHHH
Q 023489 114 EAEFRSFYVLLHLD-SNG-QPVGESLSLWFRHVP--SPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA---EASYLQYC 186 (281)
Q Consensus 114 e~EF~aY~iL~~l~-~~~-~~~~~~l~~~l~~l~--~~i~~~p~v~~Al~i~~a~~~~Ny~rFF~L~~~---~~~~L~~c 186 (281)
|..-.+|.++..+- .++ ...++.+ ..| .++..+|....-.++..++..|++..|...+++ ..|++...
T Consensus 209 ~~~~~a~~l~~~all~~~i~~f~eLL-----~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~ 283 (393)
T 4b4t_O 209 ERQQLAYDLSISALLGDKIYNFGELL-----HHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQH 283 (393)
T ss_dssp HHHHHHHHHHHHHHHCCSSCSTHHHH-----HSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCChHHHh-----CChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhh
Confidence 34455777777642 222 1233322 223 223456666667889999999999999986542 35555433
Q ss_pred HHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchHHHHH---HHHhCCee
Q 023489 187 IIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELF---CNAYGLQT 240 (281)
Q Consensus 187 ll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e~~~f---c~~~Gl~~ 240 (281)
. .....++|..+|..++.+ .....+|.+.+++.|+.+.+|++.+ +-.-|+.-
T Consensus 284 ~-~~l~~kirll~l~~l~~~-~~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~ 338 (393)
T 4b4t_O 284 E-SFLRQKICLMTLIETVFV-KNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLK 338 (393)
T ss_dssp H-HHHHHHHHHHHHHHHHCS-SSCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSS
T ss_pred H-HHHHHHHHHHHHHHHhcc-CCCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEE
Confidence 2 234678999999888753 3234799999999999995554333 44556544
No 7
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=92.68 E-value=0.31 Score=41.56 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=63.8
Q ss_pred HHHHHHHHhCcHHHHHHHHHhCCchHHHHHHHHhHHHHHHHHHHHHHhhcC---CCCCcCHHHHHHHHcCC------chH
Q 023489 158 RQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCY---KLHPYPLGHLSKVLMME------ESD 228 (281)
Q Consensus 158 l~i~~a~~~~Ny~rFF~L~~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~y---k~~~~pl~~L~~~L~fd------d~e 228 (281)
..+..|++.||...|=+.+......+..+=+..-+.++|..+++.+.|--+ +...+|++.++..|.++ ++|
T Consensus 84 ~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~e 163 (203)
T 3t5x_A 84 AEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDE 163 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHHH
Confidence 378899999999999998875333333332233468888888877765211 23479999999999863 234
Q ss_pred H---HHHHHHhCCee-eecCCCccccccCcccccCC
Q 023489 229 V---ELFCNAYGLQT-CIDEVGNKLLPTKQTTFCRP 260 (281)
Q Consensus 229 ~---~~fc~~~Gl~~-~~d~~g~~~~~~k~s~f~~p 260 (281)
+ ..-+-.-|..- ..+.+...++..|+.+|..-
T Consensus 164 vE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~pFP~l 199 (203)
T 3t5x_A 164 VQCILANLIYMGHVKGYISHQHQKLVVSKQNPFPPL 199 (203)
T ss_dssp HHHHHHHHHHHTSSCEEEETTTTEEEECSSCSSCCG
T ss_pred HHHHHHHHHHcCceEEEEcccccEEEECCCCCCCCc
Confidence 3 33334444432 33444444454577777543
No 8
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.62 E-value=0.32 Score=45.82 Aligned_cols=93 Identities=15% Similarity=0.252 Sum_probs=70.6
Q ss_pred ChhHHHHHHHHHHHHhCcHHHHHHHHHh-------CCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHc
Q 023489 151 SKEMWFARQALRYFQMGNYRRFLSTVAA-------EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLM 223 (281)
Q Consensus 151 ~p~v~~Al~i~~a~~~~Ny~rFF~L~~~-------~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~ 223 (281)
.|.++-..++..++..++|..||..+.. ..+|+..++ ..+...||.+++..+.+ .|+ .+.++.+++.||
T Consensus 283 ~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~-~~l~~~ir~~~l~q~~~-~Ys--~I~l~~mA~~l~ 358 (429)
T 4b4t_R 283 TAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHA-DFFVREMRRKVYAQLLE-SYK--TLSLKSMASAFG 358 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTH-HHHHHHHHHHHHHHHHH-TCS--EEEHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHH-HHHHHHHHHHHHHHHhH-Hhc--eeeHHHHHHHhC
Confidence 4666667788899999999999986432 245666554 34778999999999999 486 699999999999
Q ss_pred CCch----HHHHHHHHhCCeeeecCCCc
Q 023489 224 MEES----DVELFCNAYGLQTCIDEVGN 247 (281)
Q Consensus 224 fdd~----e~~~fc~~~Gl~~~~d~~g~ 247 (281)
.+.+ ++..+...--+....|.-+.
T Consensus 359 ~s~~~~E~~L~~lI~~g~l~akID~~~g 386 (429)
T 4b4t_R 359 VSVAFLDNDLGKFIPNKQLNCVIDRVNG 386 (429)
T ss_dssp SCHHHHHHHHHHHHHHTSSCEEEETTTT
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 9953 36677777777776665433
No 9
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=85.44 E-value=2.7 Score=34.72 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHhCCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCC-chHHHHHH
Q 023489 155 WFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMME-ESDVELFC 233 (281)
Q Consensus 155 ~~Al~i~~a~~~~Ny~rFF~L~~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fd-d~e~~~fc 233 (281)
..-.++...|..|+|..|-.. ++..|-|. ..-..++|.-+|-.++.. ...+|.+.+++.|+.+ ..|.+.|.
T Consensus 60 ~~~~~LL~iF~~G~~~~y~~~-~~~~p~L~----~~~~~KlrlLtL~sLa~~---~~~lsy~~I~~~l~i~~~~evE~lv 131 (169)
T 3chm_A 60 SVYLDLLRLFAHGTWGDYKCN-ATRLPHLS----PDQILKLKQLTVLTLAES---NKVLPYDTLMVELDVSNVRELEDFL 131 (169)
T ss_dssp HHHHHHHHHHHHCCHHHHHHH-GGGSCCCC----HHHHHHHHHHHHHHHHHH---CSEEEHHHHHHHHTCCSHHHHHHHH
T ss_pred hHHHHHHHHHhcCCHHHHHHh-HHhCcchH----HHHHHHHHHHHHHHHHHh---CCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 446788999999999999874 44556554 445688999999999863 3479999999999999 56777766
Q ss_pred H----HhCCeee
Q 023489 234 N----AYGLQTC 241 (281)
Q Consensus 234 ~----~~Gl~~~ 241 (281)
- +.|+.-.
T Consensus 132 I~~ai~~gLI~g 143 (169)
T 3chm_A 132 INECMYAGIVRG 143 (169)
T ss_dssp HHTHHHHTSEEE
T ss_pred HHHHHHhCCeEE
Confidence 5 4677653
No 10
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.97 E-value=22 Score=31.41 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=59.3
Q ss_pred cChhHHHHHHHHHHHHhCcHHHHHHHHHh------CCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHc
Q 023489 150 KSKEMWFARQALRYFQMGNYRRFLSTVAA------EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLM 223 (281)
Q Consensus 150 ~~p~v~~Al~i~~a~~~~Ny~rFF~L~~~------~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~ 223 (281)
..|.+..-..+..++..+++..|.+.+.. ..+++.. ........+|..++..+.+ .|. .++++.+++.|+
T Consensus 292 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~l~~~~~-~y~--~i~l~~la~~l~ 367 (434)
T 4b4t_Q 292 QSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRS-HFNALYDTLLESNLCKIIE-PFE--CVEISHISKIIG 367 (434)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHH-HHHHHHHHHHHHHHHHHHS-SCS--CEEHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHHHHHHHHHH-HHH--hcCHHHHHHHhC
Confidence 45666666777889999999999887653 1333333 3445667899999999998 475 699999999999
Q ss_pred CCchHHHHHHH
Q 023489 224 MEESDVELFCN 234 (281)
Q Consensus 224 fdd~e~~~fc~ 234 (281)
.+.++++.++.
T Consensus 368 ~~~~~~E~~l~ 378 (434)
T 4b4t_Q 368 LDTQQVEGKLS 378 (434)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 99666554443
No 11
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=82.11 E-value=6.1 Score=37.70 Aligned_cols=84 Identities=7% Similarity=0.086 Sum_probs=54.7
Q ss_pred hhhCCh-hhhcC---hhHHH-HHHHHHHHHhCcHHHHHHHHHhC-CchHHHHHHHHhHHHHHHHHHHHHHh-------hc
Q 023489 141 FRHVPS-PIIKS---KEMWF-ARQALRYFQMGNYRRFLSTVAAE-ASYLQYCIIEPYIDEVRSLALCCIHN-------CC 207 (281)
Q Consensus 141 l~~l~~-~i~~~---p~v~~-Al~i~~a~~~~Ny~rFF~L~~~~-~~~L~~cll~~~~~~vR~~aL~~i~~-------a~ 207 (281)
+.++|+ ++++. |.+.- =..+..|++.||...|=+.+... ..++..-++...+.++|..+++.+.| ..
T Consensus 278 lG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~ 357 (455)
T 3t5v_B 278 LGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTE 357 (455)
T ss_dssp TTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344554 35554 44432 35789999999999999988753 33333333255566777665554443 13
Q ss_pred CCCCCcCHHHHHHHHcC
Q 023489 208 YKLHPYPLGHLSKVLMM 224 (281)
Q Consensus 208 yk~~~~pl~~L~~~L~f 224 (281)
|++..+|++.++..|.+
T Consensus 358 ~~~srI~l~~i~~aL~~ 374 (455)
T 3t5v_B 358 WGQNKLPYSLIERVLQL 374 (455)
T ss_dssp TCCCEEEHHHHHHHHHH
T ss_pred CCCCeeeHHHHHHHHhh
Confidence 66678999999999985
No 12
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.44 E-value=45 Score=31.16 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHhCcHHHHHHHHHhC------CchHH-----HHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHH
Q 023489 152 KEMWFARQALRYFQMGNYRRFLSTVAAE------ASYLQ-----YCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSK 220 (281)
Q Consensus 152 p~v~~Al~i~~a~~~~Ny~rFF~L~~~~------~~~L~-----~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~ 220 (281)
+.+..--.+..+|..++..+|-..+..- .+... .--....-..++...|..+++ .|. .++++.|++
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k-~Ys--~I~l~~la~ 367 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISE-YYS--RITLLRLNE 367 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHH-HEE--EEEHHHHHH
T ss_pred cccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHH-Hhc--eeeHHHHHH
Confidence 3444445677888888776666544321 11110 111233557788899999999 486 699999999
Q ss_pred HHcCCchHHHHHHH
Q 023489 221 VLMMEESDVELFCN 234 (281)
Q Consensus 221 ~L~fdd~e~~~fc~ 234 (281)
+|+.+.++++.++.
T Consensus 368 lL~l~~~evE~~ls 381 (445)
T 4b4t_P 368 LLDLTESQTETYIS 381 (445)
T ss_dssp HHTSCHHHHHHHHH
T ss_pred HhCcCHHHHHHHHH
Confidence 99999766555543
No 13
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=65.61 E-value=8.3 Score=27.96 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchHH----HHHHHHhCCeeeecC
Q 023489 193 DEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDV----ELFCNAYGLQTCIDE 244 (281)
Q Consensus 193 ~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e~----~~fc~~~Gl~~~~d~ 244 (281)
.++...+|+.+++ .|. ++.++.|+++|+++.+++ ..+...--+.-..|+
T Consensus 14 ~~v~E~nl~~is~-~Y~--~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq 66 (84)
T 1ufm_A 14 RAVIEHNLLSASK-LYN--NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQ 66 (84)
T ss_dssp HHHHHHHHHHHHH-SCS--EEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEET
T ss_pred HHHHHHHHHHHHH-hcC--eeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeC
Confidence 4556677888888 586 699999999999996554 445555555555454
No 14
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.02 E-value=8.8 Score=37.32 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=49.4
Q ss_pred HHHHHHHHhCcHHHHHHHHHhCCchHHH----HHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCc-hHHH
Q 023489 158 RQALRYFQMGNYRRFLSTVAAEASYLQY----CIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVE 230 (281)
Q Consensus 158 l~i~~a~~~~Ny~rFF~L~~~~~~~L~~----cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd-~e~~ 230 (281)
..+..|++.||..+|=..+........+ -++.+....+....++.++++ |. ++|+.+++..|++++ +|++
T Consensus 346 ~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~-Ys--rIsL~dIa~kL~L~s~eeaE 420 (523)
T 4b4t_S 346 YHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLT-YK--KISLRDICLKLNLDSEQTVE 420 (523)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCC-SS--EECHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHH-Hh--cccHHHHHHHhCCCCHHHHH
Confidence 3567899999999998877532111111 244555566777788888885 75 699999999999973 4443
No 15
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=50.49 E-value=7.5 Score=29.72 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.0
Q ss_pred HHcCCc-hHHHHHHHHhCCeeeecC
Q 023489 221 VLMMEE-SDVELFCNAYGLQTCIDE 244 (281)
Q Consensus 221 ~L~fdd-~e~~~fc~~~Gl~~~~d~ 244 (281)
.|.|++ ++|++||+.+|+.....+
T Consensus 55 ~L~F~skE~AiayAek~G~~y~V~e 79 (106)
T 2jya_A 55 KLTFETQEQAEAYAQRKGIEYRVIL 79 (106)
T ss_dssp EEEESSHHHHHHHHHHHTCEEEECC
T ss_pred eEecCCHHHHHHHHHHcCCEEEEeC
Confidence 478886 679999999999997643
No 16
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=49.16 E-value=11 Score=28.95 Aligned_cols=24 Identities=8% Similarity=0.016 Sum_probs=20.0
Q ss_pred HHcCCc-hHHHHHHHHhCCeeeecC
Q 023489 221 VLMMEE-SDVELFCNAYGLQTCIDE 244 (281)
Q Consensus 221 ~L~fdd-~e~~~fc~~~Gl~~~~d~ 244 (281)
.|.|++ ++|+.||+.+|+.....+
T Consensus 63 ~L~F~skE~AiayAek~G~~y~V~e 87 (108)
T 2lju_A 63 CLSFTTRELAIAYAVAHKIDYTVLQ 87 (108)
T ss_dssp CEEESSHHHHHHHHHHTTCEEEEEC
T ss_pred eEecCCHHHHHHHHHHcCCEEEEec
Confidence 488886 679999999999997643
No 17
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=31.08 E-value=1e+02 Score=26.26 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchHHHHHHHHhCCeeeecCCCcc
Q 023489 194 EVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNK 248 (281)
Q Consensus 194 ~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e~~~fc~~~Gl~~~~d~~g~~ 248 (281)
.++...|+.+.+ +.+++++.|+..+|.+.+++...++..+..+. |++|++
T Consensus 22 ~~~~~llr~la~----Grpv~~~~LA~~~g~~~~~v~~~L~~l~~~~~-D~~G~I 71 (220)
T 3f2g_A 22 DLLVPLLRELAK----GRPVSRTTLAGILDWPAERVAAVLEQATSTEY-DKDGNI 71 (220)
T ss_dssp HHHHHHHHHHTT----TSCBCHHHHHHHHTCCHHHHHHHHHHCTTCEE-CTTSCE
T ss_pred HHHHHHHHHHhc----CCCCCHHHHHHHhCcCHHHHHHHHHhCCcEEE-CCCCCE
Confidence 455666777764 35899999999999999999999999886554 677885
No 18
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=31.02 E-value=1.3e+02 Score=21.81 Aligned_cols=62 Identities=8% Similarity=0.071 Sum_probs=41.1
Q ss_pred cHHHHHHHHHhCCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchH--HHHHHHHhCCee
Q 023489 168 NYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQT 240 (281)
Q Consensus 168 Ny~rFF~L~~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e--~~~fc~~~Gl~~ 240 (281)
...|.|+-.- ..++.. |+..+|...-..+-.. ...|+..++..+||.|.. ...|-+.+|++-
T Consensus 39 ~l~r~fk~~~-G~s~~~------~~~~~Rl~~A~~lL~~----~~~~i~eIA~~~Gf~~~s~F~r~Fk~~~G~tP 102 (113)
T 3oio_A 39 QLERLFKQYL-GTVPSK------YYLELRLNRARQLLQQ----TSKSIVQIGLACGFSSGPHFSSTYRNHFNITP 102 (113)
T ss_dssp HHHHHHHHHT-SSCHHH------HHHHHHHHHHHHHHHH----CCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHH-CcCHHH------HHHHHHHHHHHHHHHc----CCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCH
Confidence 3455555332 345433 6677777654444432 258999999999999753 688999999865
No 19
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=29.69 E-value=1.4e+02 Score=21.30 Aligned_cols=63 Identities=8% Similarity=-0.058 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHhCCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCch-H-HHHHHHHhCCee
Q 023489 167 GNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEES-D-VELFCNAYGLQT 240 (281)
Q Consensus 167 ~Ny~rFF~L~~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~-e-~~~fc~~~Gl~~ 240 (281)
....|.|+-.- ..++.. |+..+|...-..+-.. ...|+..++..+||.+. . ...|=+.+|++-
T Consensus 36 ~~l~r~fk~~~-G~s~~~------~~~~~Rl~~A~~lL~~----~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP 100 (108)
T 3oou_A 36 VYLGQLFQKEM-GEHFTD------YLNRYRVNYAKEELLQ----TKDNLTIIAGKSGYTDMAYFYRQFKKHTGETP 100 (108)
T ss_dssp HHHHHHHHHHH-SSCHHH------HHHHHHHHHHHHHHHH----CCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHH-CcCHHH------HHHHHHHHHHHHHHHc----CCCCHHHHHHHcCCCChHHHHHHHHHHhCcCH
Confidence 34455555432 455543 5677776644443332 25799999999999874 3 588888899854
No 20
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=29.13 E-value=1.5e+02 Score=21.16 Aligned_cols=62 Identities=10% Similarity=0.171 Sum_probs=40.4
Q ss_pred cHHHHHHHHHhCCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchH--HHHHHHHhCCee
Q 023489 168 NYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQT 240 (281)
Q Consensus 168 Ny~rFF~L~~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e--~~~fc~~~Gl~~ 240 (281)
...|.|+-.- ..++.. |+..+|...-..+-.. ...|+..++..+||.|.. ...|-+.+|++-
T Consensus 36 ~l~r~fk~~~-G~s~~~------~~~~~Rl~~A~~lL~~----~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP 99 (107)
T 2k9s_A 36 RLSHLFRQQL-GISVLS------WREDQRISQAKLLLST----TRMPIATVGRNVGFDDQLYFSRVFKKCTGASP 99 (107)
T ss_dssp HHHHHHHHHH-SSCHHH------HHHHHHHHHHHHHHHH----CCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHH-CcCHHH------HHHHHHHHHHHHHHHc----CCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCH
Confidence 3455555432 455543 6677776544333331 258999999999999754 688999999854
No 21
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=28.09 E-value=1.6e+02 Score=20.79 Aligned_cols=62 Identities=8% Similarity=0.048 Sum_probs=40.1
Q ss_pred cHHHHHHHHHhCCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCch-H-HHHHHHHhCCee
Q 023489 168 NYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEES-D-VELFCNAYGLQT 240 (281)
Q Consensus 168 Ny~rFF~L~~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~-e-~~~fc~~~Gl~~ 240 (281)
...|.|+-.- ..++.. |+..+|...-..+-.. ...|+..++..+||.+. . ...|=+.+|++-
T Consensus 35 ~l~r~fk~~~-g~s~~~------~~~~~Rl~~A~~lL~~----~~~si~~iA~~~Gf~~~s~F~r~Fk~~~G~tP 98 (103)
T 3lsg_A 35 YLSIMFKKNF-GIPFQD------YLLQKRMEKAKLLLLT----TELKNYEIAEQVGFEDVNYFITKFKKYYQITP 98 (103)
T ss_dssp HHHHHHHHHH-SSCHHH------HHHHHHHHHHHHHHHH----CCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHH-CcCHHH------HHHHHHHHHHHHHHHC----CCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCH
Confidence 3455555432 455543 6677777654444332 25899999999999874 3 588888888853
No 22
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=27.44 E-value=1.7e+02 Score=20.84 Aligned_cols=64 Identities=8% Similarity=0.025 Sum_probs=40.9
Q ss_pred cHHHHHHHHHhCCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCch-H-HHHHHHHhCCee
Q 023489 168 NYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEES-D-VELFCNAYGLQT 240 (281)
Q Consensus 168 Ny~rFF~L~~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~-e-~~~fc~~~Gl~~ 240 (281)
-..|.|+-.- ..++.. |+..+|...-..+-.. -. ..+|+..++..+||.+. . ...|=+.+|++-
T Consensus 34 ~l~r~fk~~~-G~s~~~------~~~~~Rl~~A~~lL~~-~~-~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP 99 (108)
T 3mn2_A 34 GIFKAFQRSR-GYSPMA------FAKRVRLQHAHNLLSD-GA-TPTTVTAAALSCGFSNLGHFARDYRDMFGEKP 99 (108)
T ss_dssp HHHHHHHHHT-SSCHHH------HHHHHHHHHHHHHHHS-SS-SCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHh-CcCHHH------HHHHHHHHHHHHHHHc-CC-CCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCh
Confidence 3455555332 455543 6777776644444432 11 13899999999999974 3 588888899854
No 23
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=25.14 E-value=1.7e+02 Score=21.31 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchH--HHHHHHHhCCeee
Q 023489 191 YIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 241 (281)
Q Consensus 191 ~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e--~~~fc~~~Gl~~~ 241 (281)
|+..+|...-..+-.. ...|+..++..+||.+.. ...|=+.+|++-.
T Consensus 54 ~~~~~Rl~~A~~lL~~----~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~ 102 (120)
T 3mkl_A 54 LLTECRMQRALQLIVI----HGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPT 102 (120)
T ss_dssp HHHHHHHHHHHHHHTS----TTCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHc----CCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 6677777644444331 258999999999999743 6888899999653
No 24
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=23.95 E-value=78 Score=20.10 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCc-hHHHHHHHHhCCee
Q 023489 215 LGHLSKVLMMEE-SDVELFCNAYGLQT 240 (281)
Q Consensus 215 l~~L~~~L~fdd-~e~~~fc~~~Gl~~ 240 (281)
++.++.+-|.++ ++|..+++.+|=.+
T Consensus 9 ia~F~~iTG~~d~~~A~~~Lea~nWDL 35 (45)
T 3e21_A 9 LADFQACTGIENIDEAITLLEQNNWDL 35 (45)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHcCCcH
Confidence 567888889998 88999999998765
No 25
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=23.62 E-value=1.9e+02 Score=21.38 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCchHHHHHHHHhHHHHHHHH-HHHHHhhcCCCCCcCHHHHHHHHcCCchH--HHHHHHHhCCeee
Q 023489 169 YRRFLSTVAAEASYLQYCIIEPYIDEVRSLA-LCCIHNCCYKLHPYPLGHLSKVLMMEESD--VELFCNAYGLQTC 241 (281)
Q Consensus 169 y~rFF~L~~~~~~~L~~cll~~~~~~vR~~a-L~~i~~a~yk~~~~pl~~L~~~L~fdd~e--~~~fc~~~Gl~~~ 241 (281)
..|.|+-.- ..++.. |+..+|... ...+..+ ..|+..++..+||.+.. ...|-+.+|++-.
T Consensus 44 l~r~fk~~~-G~s~~~------~l~~~Rl~~A~~lL~~~-----~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~ 107 (129)
T 1bl0_A 44 LQRMFKKET-GHSLGQ------YIRSRKMTEIAQKLKES-----NEPILYLAERYGFESQQTLTRTFKNYFDVPPH 107 (129)
T ss_dssp HHHHHHHHH-SSCHHH------HHHHHHHHHHHHHHHHC-----CCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHH-CcCHHH------HHHHHHHHHHHHHHHcC-----CCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 445555332 455543 677777654 4444332 57999999999999754 6899999999764
No 26
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.18 E-value=24 Score=26.01 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=26.8
Q ss_pred cCHHHHHHHH---cCCchHHHHHHHHhCCeeeecCCCccccccCcccccCCc
Q 023489 213 YPLGHLSKVL---MMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPK 261 (281)
Q Consensus 213 ~pl~~L~~~L---~fdd~e~~~fc~~~Gl~~~~d~~g~~~~~~k~s~f~~p~ 261 (281)
...+.+++|| ||++ +..+|+.|.+ +|..++..+...+..|.
T Consensus 22 Wsp~~VadWLkk~g~~~--cd~lv~Kh~I------DG~~lL~LtE~Dlrk~P 65 (90)
T 2eap_A 22 WDPDSLADYFKKLNYKD--CEKAVKKYHI------DGARFLNLTENDIQKFP 65 (90)
T ss_dssp CCTTTHHHHHHHTTCHH--HHHHHHHTTC------CHHHHHTCCHHHHTTSC
T ss_pred cCHHHHHHHHHHcCCch--HHHHHHHhcc------CchhhhcccHHHhccCC
Confidence 4456677777 7765 6777777765 36677766666665544
No 27
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=21.53 E-value=1.8e+02 Score=19.23 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCch---HHHHHHHHhCCeee
Q 023489 194 EVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEES---DVELFCNAYGLQTC 241 (281)
Q Consensus 194 ~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~---e~~~fc~~~Gl~~~ 241 (281)
.+|.+-|..+... ..++++..|++.|+.+.+ ....-++..|+...
T Consensus 10 ~~~~~IL~~L~~~---~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 10 NLEQKILQVLSDD---GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHH---CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHc---CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 4677788888752 236999999999999954 46778888899543
Done!