Query 023490
Match_columns 281
No_of_seqs 276 out of 2149
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:26:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07991 IlvN: Acetohydroxy ac 100.0 1.7E-38 3.6E-43 274.9 14.8 153 108-280 2-155 (165)
2 PRK05225 ketol-acid reductoiso 100.0 6.7E-37 1.4E-41 299.8 13.9 186 71-280 1-193 (487)
3 COG0059 IlvC Ketol-acid reduct 100.0 5.3E-36 1.2E-40 280.2 15.0 155 106-280 14-169 (338)
4 PRK13403 ketol-acid reductoiso 100.0 1.6E-35 3.5E-40 280.5 16.5 155 105-280 11-166 (335)
5 PRK05479 ketol-acid reductoiso 100.0 1.7E-31 3.7E-36 253.8 15.8 157 105-281 12-169 (330)
6 TIGR00465 ilvC ketol-acid redu 100.0 1.9E-30 4.1E-35 244.9 16.5 154 108-281 1-155 (314)
7 PRK12491 pyrroline-5-carboxyla 99.8 5.8E-18 1.3E-22 156.6 11.6 116 112-241 3-124 (272)
8 COG1052 LdhA Lactate dehydroge 99.7 3.9E-18 8.4E-23 162.1 10.4 148 86-249 118-279 (324)
9 COG0111 SerA Phosphoglycerate 99.7 2.3E-18 4.9E-23 163.7 8.6 146 86-246 118-273 (324)
10 PF02826 2-Hacid_dh_C: D-isome 99.7 4.2E-18 9.1E-23 147.7 5.0 144 87-245 12-166 (178)
11 COG0345 ProC Pyrroline-5-carbo 99.7 4E-17 8.8E-22 151.6 11.4 117 111-242 1-122 (266)
12 PRK15409 bifunctional glyoxyla 99.7 3.4E-17 7.4E-22 155.2 9.2 143 87-245 119-275 (323)
13 PRK08410 2-hydroxyacid dehydro 99.7 7.1E-17 1.5E-21 152.1 8.6 138 89-246 118-271 (311)
14 PRK06932 glycerate dehydrogena 99.7 2.6E-16 5.7E-21 148.5 9.0 141 87-247 118-274 (314)
15 PRK07574 formate dehydrogenase 99.6 7.1E-16 1.5E-20 149.7 11.5 140 93-245 172-323 (385)
16 PRK06487 glycerate dehydrogena 99.6 3.3E-16 7.1E-21 147.9 8.9 133 93-245 124-272 (317)
17 PRK13243 glyoxylate reductase; 99.6 3.9E-16 8.4E-21 148.4 9.1 141 88-245 121-278 (333)
18 PLN02688 pyrroline-5-carboxyla 99.6 2.2E-15 4.8E-20 136.7 12.9 116 112-242 1-122 (266)
19 PRK07679 pyrroline-5-carboxyla 99.6 2.1E-15 4.5E-20 138.8 12.5 120 109-242 2-127 (279)
20 PLN03139 formate dehydrogenase 99.6 8.9E-16 1.9E-20 149.1 10.6 146 87-246 174-331 (386)
21 PLN02928 oxidoreductase family 99.6 8.2E-16 1.8E-20 147.0 8.9 142 93-245 143-301 (347)
22 PRK06928 pyrroline-5-carboxyla 99.6 3.1E-15 6.7E-20 138.2 12.1 117 111-241 1-124 (277)
23 PRK15469 ghrA bifunctional gly 99.6 1.9E-15 4.2E-20 142.7 9.3 137 93-245 120-265 (312)
24 KOG0069 Glyoxylate/hydroxypyru 99.6 4.9E-15 1.1E-19 141.5 11.6 147 85-246 134-292 (336)
25 PRK11790 D-3-phosphoglycerate 99.6 3.5E-15 7.6E-20 145.6 8.6 107 93-215 133-243 (409)
26 TIGR01327 PGDH D-3-phosphoglyc 99.6 4.5E-15 9.7E-20 148.8 9.5 138 93-245 120-267 (525)
27 PTZ00431 pyrroline carboxylate 99.6 1.9E-14 4.1E-19 131.7 12.8 109 112-240 4-116 (260)
28 PRK13581 D-3-phosphoglycerate 99.6 6.9E-15 1.5E-19 147.5 9.1 140 89-245 119-268 (526)
29 PRK06436 glycerate dehydrogena 99.6 9.2E-15 2E-19 137.8 8.9 103 93-213 106-211 (303)
30 PRK11880 pyrroline-5-carboxyla 99.5 3.9E-14 8.4E-19 128.6 12.0 116 111-241 2-121 (267)
31 PRK07634 pyrroline-5-carboxyla 99.5 4.5E-14 9.7E-19 126.3 11.7 139 112-276 5-148 (245)
32 PLN02306 hydroxypyruvate reduc 99.5 1.8E-14 3.8E-19 140.0 9.0 138 93-238 144-304 (386)
33 PRK06476 pyrroline-5-carboxyla 99.5 4.4E-14 9.5E-19 128.4 11.0 116 112-242 1-121 (258)
34 PRK12480 D-lactate dehydrogena 99.5 5.2E-14 1.1E-18 133.9 10.3 129 93-238 127-266 (330)
35 KOG0068 D-3-phosphoglycerate d 99.5 4E-14 8.7E-19 135.1 8.7 140 87-241 122-271 (406)
36 PF03446 NAD_binding_2: NAD bi 99.5 1.4E-13 3E-18 117.6 10.4 114 111-235 1-118 (163)
37 PLN02256 arogenate dehydrogena 99.5 2.6E-13 5.7E-18 127.8 13.2 121 107-244 33-158 (304)
38 PRK07680 late competence prote 99.5 1.6E-13 3.5E-18 125.8 11.4 115 112-241 1-121 (273)
39 PRK06545 prephenate dehydrogen 99.5 4.3E-13 9.4E-18 128.2 13.9 124 112-244 1-126 (359)
40 COG0287 TyrA Prephenate dehydr 99.5 3.2E-13 6.9E-18 126.3 11.8 123 112-243 4-128 (279)
41 PF03807 F420_oxidored: NADP o 99.5 1.7E-13 3.7E-18 106.1 8.1 90 113-213 1-96 (96)
42 PRK07417 arogenate dehydrogena 99.5 2.9E-13 6.2E-18 124.8 10.6 118 112-243 1-118 (279)
43 PRK08605 D-lactate dehydrogena 99.4 2.3E-13 5E-18 129.3 8.6 128 94-237 128-267 (332)
44 PLN02712 arogenate dehydrogena 99.4 1.8E-12 4E-17 133.6 13.3 120 105-240 364-488 (667)
45 PRK08655 prephenate dehydrogen 99.4 2.9E-12 6.2E-17 126.1 12.9 119 112-244 1-123 (437)
46 PRK15438 erythronate-4-phospha 99.4 5.8E-13 1.3E-17 129.3 7.7 120 106-244 112-244 (378)
47 COG2084 MmsB 3-hydroxyisobutyr 99.4 2.7E-12 5.8E-17 120.6 10.7 95 112-216 1-99 (286)
48 PRK08507 prephenate dehydrogen 99.4 4.7E-12 1E-16 116.3 11.5 114 112-239 1-116 (275)
49 PRK14806 bifunctional cyclohex 99.4 7.3E-12 1.6E-16 129.1 13.5 115 112-240 4-123 (735)
50 PRK08818 prephenate dehydrogen 99.4 5.6E-12 1.2E-16 122.1 11.9 113 112-249 5-121 (370)
51 PLN02712 arogenate dehydrogena 99.3 7.3E-12 1.6E-16 129.2 12.8 117 112-244 53-174 (667)
52 PRK07502 cyclohexadienyl dehyd 99.3 1.5E-11 3.2E-16 114.7 13.7 118 112-238 7-126 (307)
53 PRK00257 erythronate-4-phospha 99.3 1.4E-12 3E-17 126.7 6.9 121 106-245 112-245 (381)
54 PRK05808 3-hydroxybutyryl-CoA 99.3 1.5E-11 3.2E-16 113.2 11.6 122 111-242 3-146 (282)
55 TIGR01915 npdG NADPH-dependent 99.3 1.9E-11 4.2E-16 109.0 11.6 146 112-277 1-172 (219)
56 PRK06130 3-hydroxybutyryl-CoA 99.3 2.8E-11 6.1E-16 112.5 12.4 122 111-242 4-143 (311)
57 PLN02545 3-hydroxybutyryl-CoA 99.3 4.9E-11 1.1E-15 110.4 11.9 122 111-242 4-147 (295)
58 PRK12490 6-phosphogluconate de 99.2 8.9E-11 1.9E-15 109.4 11.4 94 112-216 1-98 (299)
59 KOG3124 Pyrroline-5-carboxylat 99.2 3.5E-11 7.7E-16 111.3 7.8 116 112-241 1-122 (267)
60 PTZ00075 Adenosylhomocysteinas 99.2 4.9E-11 1.1E-15 118.8 8.8 124 106-250 250-381 (476)
61 PRK07531 bifunctional 3-hydrox 99.2 2.1E-10 4.5E-15 114.4 13.1 119 111-242 4-144 (495)
62 PRK00094 gpsA NAD(P)H-dependen 99.2 2.1E-10 4.6E-15 106.1 11.7 95 111-216 1-110 (325)
63 PRK11559 garR tartronate semia 99.2 2.4E-10 5.3E-15 105.4 11.5 95 111-216 2-100 (296)
64 PRK09599 6-phosphogluconate de 99.2 3E-10 6.5E-15 105.9 11.9 116 112-241 1-123 (301)
65 PRK15461 NADH-dependent gamma- 99.1 3E-10 6.4E-15 105.9 11.3 95 111-216 1-99 (296)
66 PRK11199 tyrA bifunctional cho 99.1 2.3E-10 5E-15 110.5 10.8 103 110-243 97-203 (374)
67 PF10727 Rossmann-like: Rossma 99.1 1.2E-10 2.6E-15 97.5 7.5 113 112-237 11-127 (127)
68 TIGR00872 gnd_rel 6-phosphoglu 99.1 3.6E-10 7.9E-15 105.4 11.3 93 112-215 1-96 (298)
69 PRK15059 tartronate semialdehy 99.1 3.3E-10 7.1E-15 105.9 10.8 117 112-242 1-122 (292)
70 COG2085 Predicted dinucleotide 99.1 3.3E-10 7.2E-15 102.3 10.1 92 111-212 1-93 (211)
71 TIGR01505 tartro_sem_red 2-hyd 99.1 3.6E-10 7.7E-15 104.4 10.5 93 113-216 1-97 (291)
72 TIGR02853 spore_dpaA dipicolin 99.1 6.6E-10 1.4E-14 104.0 11.6 112 88-213 127-241 (287)
73 PRK06035 3-hydroxyacyl-CoA deh 99.1 1.2E-09 2.6E-14 101.1 13.0 122 111-243 3-150 (291)
74 PLN02350 phosphogluconate dehy 99.1 6.1E-10 1.3E-14 111.6 10.5 99 111-216 6-111 (493)
75 TIGR01692 HIBADH 3-hydroxyisob 99.0 9.7E-10 2.1E-14 101.7 9.9 91 116-217 1-95 (288)
76 TIGR00112 proC pyrroline-5-car 99.0 8.5E-10 1.8E-14 100.5 8.8 94 141-241 10-104 (245)
77 PRK09260 3-hydroxybutyryl-CoA 99.0 3.2E-09 6.9E-14 98.2 12.8 100 111-221 1-127 (288)
78 PTZ00142 6-phosphogluconate de 99.0 1.4E-09 3E-14 108.4 10.4 97 111-215 1-104 (470)
79 PRK08293 3-hydroxybutyryl-CoA 99.0 6.7E-09 1.4E-13 96.1 13.2 120 111-240 3-146 (287)
80 PRK07530 3-hydroxybutyryl-CoA 99.0 7.1E-09 1.5E-13 95.9 12.5 103 111-221 4-129 (292)
81 TIGR00936 ahcY adenosylhomocys 99.0 5.4E-09 1.2E-13 102.6 12.2 128 69-215 157-285 (406)
82 PF00670 AdoHcyase_NAD: S-aden 99.0 3.2E-09 6.9E-14 92.6 9.0 112 106-239 19-135 (162)
83 PRK14618 NAD(P)H-dependent gly 98.9 3.6E-09 7.7E-14 99.4 9.8 93 112-215 5-108 (328)
84 PRK14619 NAD(P)H-dependent gly 98.9 4.3E-09 9.2E-14 98.4 10.2 82 109-215 3-86 (308)
85 PF01210 NAD_Gly3P_dh_N: NAD-d 98.9 3.7E-09 7.9E-14 90.1 8.8 95 113-214 1-106 (157)
86 TIGR00873 gnd 6-phosphoglucona 98.9 5.1E-09 1.1E-13 104.3 10.5 92 113-215 1-101 (467)
87 KOG0409 Predicted dehydrogenas 98.9 3E-09 6.4E-14 100.7 8.1 94 112-216 36-134 (327)
88 PRK07066 3-hydroxybutyryl-CoA 98.9 1.5E-08 3.3E-13 96.6 12.6 104 111-221 7-129 (321)
89 PRK06129 3-hydroxyacyl-CoA deh 98.9 3.7E-08 8E-13 92.2 13.4 120 111-240 2-144 (308)
90 cd00401 AdoHcyase S-adenosyl-L 98.9 2.4E-08 5.2E-13 98.3 12.3 167 69-256 164-336 (413)
91 PLN02858 fructose-bisphosphate 98.8 1.4E-08 3.1E-13 112.2 11.4 94 112-216 5-102 (1378)
92 TIGR01724 hmd_rel H2-forming N 98.8 2.7E-08 5.8E-13 95.3 11.8 118 123-251 32-160 (341)
93 PF02153 PDH: Prephenate dehyd 98.8 1E-08 2.2E-13 94.1 8.5 109 126-243 1-109 (258)
94 PRK12439 NAD(P)H-dependent gly 98.8 2.4E-08 5.2E-13 95.1 11.2 119 111-240 7-144 (341)
95 PRK05476 S-adenosyl-L-homocyst 98.8 1.4E-08 3.1E-13 100.2 9.4 125 71-216 176-303 (425)
96 PLN02858 fructose-bisphosphate 98.8 2.1E-08 4.6E-13 110.8 11.8 95 112-217 325-423 (1378)
97 TIGR03026 NDP-sugDHase nucleot 98.8 2E-08 4.4E-13 97.5 10.1 93 112-215 1-123 (411)
98 PRK12557 H(2)-dependent methyl 98.8 5.4E-08 1.2E-12 93.5 11.6 110 123-242 32-147 (342)
99 PLN02494 adenosylhomocysteinas 98.8 3.5E-08 7.7E-13 98.5 10.5 125 69-214 216-343 (477)
100 PRK08229 2-dehydropantoate 2-r 98.7 1.2E-07 2.6E-12 89.0 12.7 102 111-221 2-118 (341)
101 PRK11064 wecC UDP-N-acetyl-D-m 98.7 8.4E-08 1.8E-12 94.0 11.6 96 111-216 3-123 (415)
102 PRK07819 3-hydroxybutyryl-CoA 98.7 1.4E-07 3.1E-12 87.9 12.6 103 111-221 5-131 (286)
103 PRK08268 3-hydroxy-acyl-CoA de 98.7 1.2E-07 2.7E-12 95.2 12.8 100 110-221 6-132 (507)
104 cd01065 NAD_bind_Shikimate_DH 98.7 1.9E-08 4.2E-13 83.5 5.2 100 107-215 16-119 (155)
105 PRK08306 dipicolinate synthase 98.7 1E-07 2.2E-12 89.6 10.4 93 106-212 148-241 (296)
106 PRK12921 2-dehydropantoate 2-r 98.7 2.4E-07 5.3E-12 85.2 12.5 102 112-221 1-113 (305)
107 PRK06522 2-dehydropantoate 2-r 98.7 3.7E-07 8.1E-12 83.6 12.6 102 112-221 1-111 (304)
108 KOG2380 Prephenate dehydrogena 98.6 1.3E-07 2.9E-12 91.3 9.5 132 112-267 53-190 (480)
109 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.6 5.2E-07 1.1E-11 90.7 12.5 102 111-220 5-129 (503)
110 PRK14620 NAD(P)H-dependent gly 98.6 6.4E-07 1.4E-11 84.0 12.1 98 112-216 1-111 (326)
111 PF02737 3HCDH_N: 3-hydroxyacy 98.5 9.3E-07 2E-11 77.4 11.3 118 113-241 1-141 (180)
112 TIGR03376 glycerol3P_DH glycer 98.5 7.5E-07 1.6E-11 85.7 10.4 105 113-217 1-122 (342)
113 PTZ00345 glycerol-3-phosphate 98.5 9.7E-07 2.1E-11 85.7 10.7 105 112-216 12-134 (365)
114 PRK13302 putative L-aspartate 98.5 1.1E-06 2.3E-11 81.7 10.4 92 112-213 7-100 (271)
115 PRK14194 bifunctional 5,10-met 98.4 6.1E-07 1.3E-11 85.2 8.4 76 106-212 155-231 (301)
116 PRK13304 L-aspartate dehydroge 98.4 1.1E-06 2.4E-11 81.2 9.8 82 111-200 1-83 (265)
117 COG0240 GpsA Glycerol-3-phosph 98.4 3.7E-06 8E-11 80.7 13.1 143 111-274 1-160 (329)
118 PRK15182 Vi polysaccharide bio 98.4 1.6E-06 3.5E-11 85.4 9.8 95 112-215 7-123 (425)
119 COG1023 Gnd Predicted 6-phosph 98.4 1.5E-06 3.3E-11 80.7 8.9 113 112-235 1-118 (300)
120 PRK06444 prephenate dehydrogen 98.4 2.2E-06 4.7E-11 76.8 9.2 82 112-244 1-83 (197)
121 cd01075 NAD_bind_Leu_Phe_Val_D 98.3 1.8E-06 3.8E-11 76.9 7.5 88 105-209 23-112 (200)
122 TIGR00518 alaDH alanine dehydr 98.3 2.9E-06 6.2E-11 82.2 9.4 98 108-212 165-267 (370)
123 cd05213 NAD_bind_Glutamyl_tRNA 98.3 4E-06 8.7E-11 79.1 9.5 97 107-212 175-273 (311)
124 PRK15057 UDP-glucose 6-dehydro 98.3 4.1E-06 8.8E-11 81.7 9.8 93 112-215 1-120 (388)
125 PRK14188 bifunctional 5,10-met 98.2 3.6E-06 7.7E-11 79.8 8.3 75 107-212 155-230 (296)
126 KOG1370 S-adenosylhomocysteine 98.2 7.1E-06 1.5E-10 78.6 10.0 148 70-237 177-324 (434)
127 PF01408 GFO_IDH_MocA: Oxidore 98.2 6.2E-06 1.3E-10 65.6 8.2 82 112-201 1-85 (120)
128 PF02558 ApbA: Ketopantoate re 98.2 1.1E-05 2.4E-10 66.9 9.4 112 114-237 1-124 (151)
129 PRK06249 2-dehydropantoate 2-r 98.2 2.5E-05 5.3E-10 73.3 12.6 101 112-221 6-117 (313)
130 PF01488 Shikimate_DH: Shikima 98.2 2E-06 4.3E-11 71.7 4.1 96 106-212 8-109 (135)
131 PRK09287 6-phosphogluconate de 98.1 7.4E-06 1.6E-10 81.8 8.7 84 122-215 1-92 (459)
132 PF03721 UDPG_MGDP_dh_N: UDP-g 98.1 9.2E-06 2E-10 71.6 8.4 92 112-215 1-123 (185)
133 COG0499 SAM1 S-adenosylhomocys 98.1 4.6E-06 9.9E-11 81.1 6.9 128 70-216 172-300 (420)
134 COG1250 FadB 3-hydroxyacyl-CoA 98.1 2.9E-05 6.2E-10 74.1 11.5 117 111-237 3-141 (307)
135 PRK11730 fadB multifunctional 98.1 2.3E-05 4.9E-10 82.0 11.6 105 109-221 311-438 (715)
136 TIGR02437 FadB fatty oxidation 98.1 3.2E-05 6.9E-10 81.0 12.6 114 110-238 312-452 (714)
137 TIGR02440 FadJ fatty oxidation 98.1 2.6E-05 5.6E-10 81.4 11.6 104 110-221 303-430 (699)
138 PRK14179 bifunctional 5,10-met 98.1 1.1E-05 2.4E-10 76.1 7.7 76 106-212 154-230 (284)
139 smart00859 Semialdhyde_dh Semi 98.0 1.9E-05 4.1E-10 63.9 7.8 97 113-214 1-101 (122)
140 PRK11154 fadJ multifunctional 98.0 3.9E-05 8.5E-10 80.1 12.1 104 110-221 308-435 (708)
141 PRK06141 ornithine cyclodeamin 98.0 1.1E-05 2.3E-10 76.3 7.1 88 109-210 124-217 (314)
142 TIGR02441 fa_ox_alpha_mit fatt 98.0 2.8E-05 6.1E-10 81.6 10.7 104 110-221 334-460 (737)
143 TIGR02371 ala_DH_arch alanine 98.0 1.8E-05 4E-10 75.2 7.9 95 111-215 128-225 (325)
144 COG0362 Gnd 6-phosphogluconate 98.0 2.2E-05 4.7E-10 77.3 8.2 95 112-213 4-103 (473)
145 PRK00045 hemA glutamyl-tRNA re 98.0 1.6E-05 3.5E-10 78.0 7.1 97 107-212 179-280 (423)
146 PRK05708 2-dehydropantoate 2-r 98.0 9.1E-05 2E-09 69.6 11.7 103 112-221 3-115 (305)
147 PRK14189 bifunctional 5,10-met 97.9 2.9E-05 6.3E-10 73.4 7.1 76 106-212 154-230 (285)
148 TIGR01035 hemA glutamyl-tRNA r 97.9 5.4E-05 1.2E-09 74.3 9.3 76 106-190 176-252 (417)
149 PLN00203 glutamyl-tRNA reducta 97.9 3.1E-05 6.8E-10 78.5 7.3 75 107-188 263-339 (519)
150 PRK00048 dihydrodipicolinate r 97.9 0.00013 2.8E-09 67.2 10.7 98 111-220 1-100 (257)
151 PRK07340 ornithine cyclodeamin 97.9 3.9E-05 8.4E-10 72.4 7.4 94 108-215 123-220 (304)
152 cd01080 NAD_bind_m-THF_DH_Cycl 97.9 5.2E-05 1.1E-09 66.3 7.5 76 106-212 40-116 (168)
153 COG1893 ApbA Ketopantoate redu 97.9 0.0002 4.4E-09 67.9 12.1 107 112-229 1-117 (307)
154 PRK13303 L-aspartate dehydroge 97.8 0.00017 3.6E-09 66.8 10.6 90 111-213 1-94 (265)
155 PLN02353 probable UDP-glucose 97.8 0.00016 3.4E-09 72.6 10.8 92 111-211 1-126 (473)
156 PRK08618 ornithine cyclodeamin 97.7 0.0001 2.2E-09 70.0 8.2 92 112-215 128-224 (325)
157 TIGR00561 pntA NAD(P) transhyd 97.7 0.00012 2.6E-09 74.1 9.1 96 108-211 162-283 (511)
158 PRK14175 bifunctional 5,10-met 97.7 0.00011 2.4E-09 69.5 8.2 77 106-213 154-231 (286)
159 PRK06407 ornithine cyclodeamin 97.7 8.2E-05 1.8E-09 70.3 7.0 94 111-215 117-215 (301)
160 PRK07589 ornithine cyclodeamin 97.7 8.7E-05 1.9E-09 71.7 7.3 97 110-215 128-228 (346)
161 TIGR00036 dapB dihydrodipicoli 97.7 0.00047 1E-08 63.9 11.7 96 111-218 1-106 (266)
162 COG0373 HemA Glutamyl-tRNA red 97.7 0.00016 3.4E-09 71.6 8.7 97 106-212 174-274 (414)
163 COG2423 Predicted ornithine cy 97.6 0.00017 3.7E-09 69.4 8.1 95 110-214 129-227 (330)
164 cd01078 NAD_bind_H4MPT_DH NADP 97.6 0.00014 3E-09 63.5 6.4 98 106-212 24-129 (194)
165 PF01118 Semialdhyde_dh: Semia 97.6 0.0002 4.4E-09 58.3 7.0 91 113-213 1-98 (121)
166 PRK04207 glyceraldehyde-3-phos 97.6 0.00064 1.4E-08 65.4 11.1 95 111-213 1-110 (341)
167 PF01113 DapB_N: Dihydrodipico 97.6 0.00024 5.2E-09 58.5 7.0 96 112-219 1-106 (124)
168 COG0677 WecC UDP-N-acetyl-D-ma 97.6 0.00038 8.3E-09 68.7 9.4 131 112-256 10-182 (436)
169 PRK13940 glutamyl-tRNA reducta 97.6 0.00015 3.3E-09 71.6 6.5 76 106-190 177-254 (414)
170 TIGR02992 ectoine_eutC ectoine 97.5 0.00024 5.2E-09 67.5 7.6 90 112-212 130-224 (326)
171 PF02423 OCD_Mu_crystall: Orni 97.5 8E-05 1.7E-09 70.5 4.3 97 110-215 127-227 (313)
172 PRK06046 alanine dehydrogenase 97.5 0.00026 5.5E-09 67.4 7.3 93 111-215 129-226 (326)
173 COG0673 MviM Predicted dehydro 97.5 0.00046 1E-08 64.0 8.4 87 111-209 3-95 (342)
174 COG1712 Predicted dinucleotide 97.5 0.00073 1.6E-08 62.5 9.2 91 112-213 1-93 (255)
175 PRK14192 bifunctional 5,10-met 97.5 0.0004 8.7E-09 65.4 7.8 76 106-212 155-231 (283)
176 PRK06823 ornithine cyclodeamin 97.5 0.00034 7.3E-09 66.7 7.3 95 110-215 127-225 (315)
177 TIGR01921 DAP-DH diaminopimela 97.4 0.00065 1.4E-08 65.4 9.1 76 112-198 4-80 (324)
178 PRK10792 bifunctional 5,10-met 97.4 0.0006 1.3E-08 64.5 8.4 76 106-212 155-231 (285)
179 cd05191 NAD_bind_amino_acid_DH 97.4 0.00092 2E-08 51.4 8.0 66 106-211 19-85 (86)
180 PRK06223 malate dehydrogenase; 97.4 0.0015 3.2E-08 61.0 10.9 69 111-186 2-78 (307)
181 PF02254 TrkA_N: TrkA-N domain 97.4 0.0023 4.9E-08 50.7 10.4 93 114-213 1-98 (116)
182 PRK09424 pntA NAD(P) transhydr 97.4 0.00092 2E-08 67.8 10.0 134 108-251 163-330 (509)
183 TIGR00507 aroE shikimate 5-deh 97.4 0.00029 6.3E-09 64.9 6.0 91 108-211 115-213 (270)
184 PF02882 THF_DHG_CYH_C: Tetrah 97.4 0.00085 1.8E-08 58.5 8.4 77 106-213 32-109 (160)
185 PRK06718 precorrin-2 dehydroge 97.4 0.0012 2.5E-08 59.1 9.2 83 106-197 6-89 (202)
186 PRK09310 aroDE bifunctional 3- 97.3 0.00052 1.1E-08 68.7 7.5 75 106-190 328-402 (477)
187 cd05212 NAD_bind_m-THF_DH_Cycl 97.3 0.00079 1.7E-08 57.3 7.5 75 106-211 24-99 (140)
188 KOG0067 Transcription factor C 97.3 0.00012 2.7E-09 71.5 2.9 100 105-217 173-275 (435)
189 COG0686 Ald Alanine dehydrogen 97.3 0.00038 8.3E-09 67.0 6.1 111 94-211 152-267 (371)
190 COG1748 LYS9 Saccharopine dehy 97.3 0.0007 1.5E-08 66.6 8.0 80 111-196 1-86 (389)
191 PRK08291 ectoine utilization p 97.3 0.00059 1.3E-08 64.9 7.4 89 112-211 133-226 (330)
192 PRK00258 aroE shikimate 5-dehy 97.3 0.00062 1.4E-08 63.1 6.9 77 106-190 119-197 (278)
193 TIGR03215 ac_ald_DH_ac acetald 97.3 0.0029 6.3E-08 59.8 11.3 90 112-212 2-95 (285)
194 PRK06199 ornithine cyclodeamin 97.3 0.00052 1.1E-08 67.0 6.5 94 110-211 154-258 (379)
195 PRK00436 argC N-acetyl-gamma-g 97.3 0.0017 3.7E-08 62.3 9.8 98 111-216 2-104 (343)
196 TIGR01763 MalateDH_bact malate 97.3 0.0021 4.5E-08 60.8 10.2 67 112-187 2-78 (305)
197 COG4007 Predicted dehydrogenas 97.2 0.0017 3.6E-08 61.4 9.0 130 111-251 1-161 (340)
198 PRK09496 trkA potassium transp 97.2 0.0023 5.1E-08 62.1 10.5 84 112-202 1-89 (453)
199 cd05311 NAD_bind_2_malic_enz N 97.2 0.002 4.4E-08 58.5 9.3 94 106-212 21-128 (226)
200 PRK12549 shikimate 5-dehydroge 97.2 0.00092 2E-08 62.6 7.1 75 106-189 123-203 (284)
201 PRK08300 acetaldehyde dehydrog 97.2 0.0033 7.1E-08 60.0 10.7 91 112-213 5-102 (302)
202 COG0569 TrkA K+ transport syst 97.2 0.0027 6E-08 57.5 9.5 80 112-197 1-85 (225)
203 PF01262 AlaDh_PNT_C: Alanine 97.2 0.00048 1E-08 59.3 4.2 99 105-211 15-138 (168)
204 PF13241 NAD_binding_7: Putati 97.1 0.0032 7E-08 50.1 8.3 76 106-196 3-78 (103)
205 PRK06719 precorrin-2 dehydroge 97.1 0.0022 4.8E-08 55.2 7.9 86 101-199 5-91 (157)
206 cd05291 HicDH_like L-2-hydroxy 97.1 0.0037 8E-08 58.8 10.0 67 112-188 1-78 (306)
207 TIGR01546 GAPDH-II_archae glyc 97.1 0.0026 5.6E-08 61.5 9.0 90 114-209 1-105 (333)
208 cd01079 NAD_bind_m-THF_DH NAD 97.1 0.0017 3.7E-08 58.6 7.2 94 106-213 58-157 (197)
209 PRK13301 putative L-aspartate 97.1 0.0041 8.8E-08 58.5 9.9 80 112-199 3-83 (267)
210 PTZ00117 malate dehydrogenase; 97.1 0.0047 1E-07 58.8 10.5 69 108-186 3-81 (319)
211 PRK14178 bifunctional 5,10-met 97.1 0.0017 3.8E-08 61.3 7.4 76 106-212 148-224 (279)
212 KOG2711 Glycerol-3-phosphate d 97.0 0.0042 9E-08 60.4 9.9 105 112-216 22-144 (372)
213 TIGR01850 argC N-acetyl-gamma- 97.0 0.004 8.6E-08 59.9 9.9 97 112-216 1-104 (346)
214 PRK08269 3-hydroxybutyryl-CoA 97.0 0.0077 1.7E-07 57.3 11.7 94 122-221 1-125 (314)
215 PF00056 Ldh_1_N: lactate/mala 97.0 0.0032 6.9E-08 53.1 8.1 69 112-186 1-77 (141)
216 PRK14191 bifunctional 5,10-met 97.0 0.0018 4E-08 61.3 7.2 76 106-212 153-229 (285)
217 KOG2653 6-phosphogluconate deh 97.0 0.0011 2.5E-08 64.9 5.2 94 112-213 7-106 (487)
218 TIGR01809 Shik-DH-AROM shikima 96.9 0.002 4.4E-08 60.1 6.6 77 107-190 122-202 (282)
219 cd05292 LDH_2 A subgroup of L- 96.9 0.006 1.3E-07 57.6 9.8 70 112-188 1-77 (308)
220 PRK14176 bifunctional 5,10-met 96.9 0.0042 9.1E-08 58.9 8.6 76 106-212 160-236 (287)
221 PRK14982 acyl-ACP reductase; P 96.9 0.0025 5.4E-08 61.7 7.0 93 106-212 151-246 (340)
222 PRK11579 putative oxidoreducta 96.9 0.0061 1.3E-07 57.8 9.5 84 112-209 5-92 (346)
223 PRK10669 putative cation:proto 96.9 0.0063 1.4E-07 61.6 10.0 89 112-208 418-511 (558)
224 PF13380 CoA_binding_2: CoA bi 96.8 0.0048 1E-07 50.5 7.4 85 112-213 1-89 (116)
225 PRK03659 glutathione-regulated 96.8 0.0063 1.4E-07 62.6 9.9 94 112-212 401-499 (601)
226 TIGR01470 cysG_Nterm siroheme 96.8 0.011 2.5E-07 52.9 10.3 79 106-193 5-84 (205)
227 PRK14183 bifunctional 5,10-met 96.8 0.0039 8.4E-08 59.0 7.6 76 106-212 153-229 (281)
228 PRK09496 trkA potassium transp 96.8 0.014 3.1E-07 56.6 11.3 94 108-209 229-328 (453)
229 PRK14172 bifunctional 5,10-met 96.8 0.005 1.1E-07 58.2 7.8 76 106-212 154-230 (278)
230 PRK14177 bifunctional 5,10-met 96.8 0.005 1.1E-07 58.4 7.8 76 106-212 155-231 (284)
231 PRK14170 bifunctional 5,10-met 96.8 0.0048 1E-07 58.5 7.7 76 106-212 153-229 (284)
232 TIGR02717 AcCoA-syn-alpha acet 96.7 0.0055 1.2E-07 60.9 8.4 87 112-215 8-100 (447)
233 PRK14169 bifunctional 5,10-met 96.7 0.0051 1.1E-07 58.2 7.7 76 106-212 152-228 (282)
234 PLN02516 methylenetetrahydrofo 96.7 0.005 1.1E-07 58.8 7.6 76 106-212 163-239 (299)
235 PRK14180 bifunctional 5,10-met 96.7 0.0055 1.2E-07 58.0 7.7 76 106-212 154-230 (282)
236 cd00650 LDH_MDH_like NAD-depen 96.7 0.0068 1.5E-07 55.6 8.2 65 114-186 1-78 (263)
237 PRK10206 putative oxidoreducta 96.7 0.0074 1.6E-07 57.7 8.7 81 112-200 2-86 (344)
238 PRK14186 bifunctional 5,10-met 96.7 0.0058 1.3E-07 58.3 7.8 76 106-212 154-230 (297)
239 PF13460 NAD_binding_10: NADH( 96.7 0.019 4.1E-07 48.3 10.1 66 114-188 1-70 (183)
240 PRK14173 bifunctional 5,10-met 96.7 0.0061 1.3E-07 57.8 7.7 76 106-212 151-227 (287)
241 PRK14171 bifunctional 5,10-met 96.7 0.0062 1.4E-07 57.8 7.7 76 106-212 155-231 (288)
242 PF03720 UDPG_MGDP_dh_C: UDP-g 96.7 0.012 2.5E-07 47.2 8.2 82 121-214 17-103 (106)
243 COG0190 FolD 5,10-methylene-te 96.7 0.0059 1.3E-07 57.8 7.4 77 106-213 152-229 (283)
244 cd01339 LDH-like_MDH L-lactate 96.6 0.0093 2E-07 55.8 8.7 64 114-186 1-74 (300)
245 PTZ00082 L-lactate dehydrogena 96.6 0.033 7.2E-07 53.2 12.6 69 108-186 4-82 (321)
246 PRK14166 bifunctional 5,10-met 96.6 0.0066 1.4E-07 57.5 7.7 76 106-212 153-229 (282)
247 KOG2304 3-hydroxyacyl-CoA dehy 96.6 0.0023 5.1E-08 59.5 4.3 104 111-221 11-142 (298)
248 PF03435 Saccharop_dh: Sacchar 96.6 0.0043 9.3E-08 59.5 6.3 90 114-212 1-98 (386)
249 TIGR02354 thiF_fam2 thiamine b 96.6 0.0091 2E-07 53.3 7.9 101 105-214 16-146 (200)
250 PRK03562 glutathione-regulated 96.6 0.013 2.8E-07 60.6 10.1 89 112-207 401-493 (621)
251 PRK14187 bifunctional 5,10-met 96.6 0.0074 1.6E-07 57.5 7.7 76 106-212 156-232 (294)
252 cd05211 NAD_bind_Glu_Leu_Phe_V 96.6 0.0063 1.4E-07 55.1 6.9 79 106-191 19-110 (217)
253 COG1004 Ugd Predicted UDP-gluc 96.6 0.012 2.6E-07 58.2 9.1 89 112-210 1-118 (414)
254 PLN02897 tetrahydrofolate dehy 96.5 0.0077 1.7E-07 58.5 7.6 76 106-212 210-286 (345)
255 PRK14182 bifunctional 5,10-met 96.5 0.0089 1.9E-07 56.6 7.8 76 106-212 153-229 (282)
256 PRK14190 bifunctional 5,10-met 96.5 0.0087 1.9E-07 56.7 7.7 76 106-212 154-230 (284)
257 PLN02616 tetrahydrofolate dehy 96.5 0.008 1.7E-07 58.8 7.4 76 106-212 227-303 (364)
258 PRK14174 bifunctional 5,10-met 96.5 0.0084 1.8E-07 57.1 7.3 80 106-212 155-235 (295)
259 PLN02819 lysine-ketoglutarate 96.5 0.0077 1.7E-07 65.9 7.9 82 109-198 567-668 (1042)
260 PRK14193 bifunctional 5,10-met 96.5 0.0094 2E-07 56.5 7.5 76 106-212 154-232 (284)
261 PF02629 CoA_binding: CoA bind 96.5 0.0074 1.6E-07 47.4 5.8 79 112-200 4-84 (96)
262 TIGR01761 thiaz-red thiazoliny 96.4 0.018 4E-07 55.7 9.6 142 112-265 4-151 (343)
263 cd01076 NAD_bind_1_Glu_DH NAD( 96.4 0.0076 1.6E-07 54.9 6.4 36 106-148 27-63 (227)
264 PRK05472 redox-sensing transcr 96.4 0.0052 1.1E-07 54.9 5.2 81 112-199 85-167 (213)
265 PRK00683 murD UDP-N-acetylmura 96.4 0.013 2.7E-07 57.3 8.2 68 112-190 4-71 (418)
266 PF05368 NmrA: NmrA-like famil 96.4 0.024 5.3E-07 50.0 9.1 69 114-188 1-74 (233)
267 TIGR00745 apbA_panE 2-dehydrop 96.3 0.04 8.7E-07 50.1 10.6 91 122-221 2-104 (293)
268 PRK08306 dipicolinate synthase 96.3 0.019 4E-07 54.2 8.5 110 110-238 2-123 (296)
269 PRK00066 ldh L-lactate dehydro 96.3 0.012 2.6E-07 56.0 7.2 68 109-187 5-82 (315)
270 TIGR02356 adenyl_thiF thiazole 96.3 0.029 6.3E-07 49.9 9.3 89 105-200 16-133 (202)
271 PRK05678 succinyl-CoA syntheta 96.3 0.031 6.8E-07 53.0 9.8 91 112-217 9-103 (291)
272 PRK14185 bifunctional 5,10-met 96.2 0.017 3.6E-07 55.1 7.6 80 106-212 153-233 (293)
273 PRK00676 hemA glutamyl-tRNA re 96.2 0.011 2.4E-07 57.3 6.4 64 106-186 170-234 (338)
274 PRK00421 murC UDP-N-acetylmura 96.2 0.024 5.2E-07 55.9 8.9 73 106-188 3-78 (461)
275 COG0169 AroE Shikimate 5-dehyd 96.2 0.012 2.5E-07 55.8 6.4 96 106-210 122-224 (283)
276 PRK14184 bifunctional 5,10-met 96.1 0.011 2.5E-07 56.0 6.2 76 106-212 153-233 (286)
277 TIGR01019 sucCoAalpha succinyl 96.1 0.029 6.2E-07 53.1 8.9 92 112-217 7-101 (286)
278 PRK12548 shikimate 5-dehydroge 96.1 0.015 3.2E-07 54.5 6.8 76 107-189 123-210 (289)
279 PRK00141 murD UDP-N-acetylmura 96.0 0.021 4.5E-07 56.9 7.5 74 106-188 11-86 (473)
280 PTZ00187 succinyl-CoA syntheta 95.9 0.058 1.3E-06 52.0 10.0 92 112-217 30-126 (317)
281 COG1064 AdhP Zn-dependent alco 95.9 0.036 7.8E-07 53.8 8.7 91 109-211 166-258 (339)
282 PRK01710 murD UDP-N-acetylmura 95.9 0.026 5.7E-07 55.7 7.8 71 106-185 10-84 (458)
283 cd05297 GH4_alpha_glucosidase_ 95.9 0.014 2.9E-07 57.7 5.8 75 112-188 1-84 (423)
284 PRK14106 murD UDP-N-acetylmura 95.9 0.039 8.4E-07 53.8 8.9 73 107-188 2-78 (450)
285 PRK14181 bifunctional 5,10-met 95.9 0.029 6.3E-07 53.3 7.7 80 106-212 149-229 (287)
286 cd08230 glucose_DH Glucose deh 95.9 0.1 2.2E-06 49.0 11.3 94 108-211 171-268 (355)
287 PLN02353 probable UDP-glucose 95.9 0.062 1.3E-06 54.2 10.4 101 107-215 321-450 (473)
288 PTZ00325 malate dehydrogenase; 95.9 0.043 9.4E-07 52.6 8.9 76 106-188 4-86 (321)
289 PRK12475 thiamine/molybdopteri 95.8 0.064 1.4E-06 51.7 9.9 90 105-201 19-139 (338)
290 cd01338 MDH_choloroplast_like 95.8 0.036 7.7E-07 53.1 8.1 66 112-187 3-87 (322)
291 cd05293 LDH_1 A subgroup of L- 95.7 0.025 5.3E-07 53.9 6.5 66 112-186 4-79 (312)
292 PRK01390 murD UDP-N-acetylmura 95.7 0.031 6.6E-07 55.0 7.2 67 106-184 5-71 (460)
293 PRK03369 murD UDP-N-acetylmura 95.6 0.051 1.1E-06 54.4 8.6 71 106-186 8-78 (488)
294 PRK05442 malate dehydrogenase; 95.6 0.057 1.2E-06 51.8 8.6 67 111-187 4-89 (326)
295 PRK04148 hypothetical protein; 95.6 0.16 3.4E-06 43.3 10.3 93 108-209 15-108 (134)
296 COG0026 PurK Phosphoribosylami 95.6 0.034 7.3E-07 54.6 7.0 77 111-194 1-81 (375)
297 PRK12749 quinate/shikimate deh 95.5 0.051 1.1E-06 51.2 7.8 77 106-189 120-207 (288)
298 PRK01438 murD UDP-N-acetylmura 95.5 0.057 1.2E-06 53.4 8.4 71 106-186 12-86 (480)
299 PRK14168 bifunctional 5,10-met 95.5 0.045 9.8E-07 52.2 7.3 80 106-212 157-237 (297)
300 cd00300 LDH_like L-lactate deh 95.5 0.081 1.8E-06 49.8 8.9 69 114-188 1-76 (300)
301 cd00757 ThiF_MoeB_HesA_family 95.5 0.056 1.2E-06 48.7 7.5 89 105-200 16-133 (228)
302 TIGR01759 MalateDH-SF1 malate 95.4 0.13 2.8E-06 49.4 10.3 69 112-186 4-87 (323)
303 TIGR03026 NDP-sugDHase nucleot 95.4 0.1 2.2E-06 51.0 9.8 89 107-211 310-409 (411)
304 PRK14167 bifunctional 5,10-met 95.4 0.054 1.2E-06 51.7 7.4 80 106-212 153-233 (297)
305 cd01492 Aos1_SUMO Ubiquitin ac 95.3 0.095 2.1E-06 46.6 8.5 91 105-202 16-134 (197)
306 cd01336 MDH_cytoplasmic_cytoso 95.3 0.074 1.6E-06 50.9 8.3 74 112-186 3-86 (325)
307 PRK06270 homoserine dehydrogen 95.3 0.08 1.7E-06 50.9 8.5 99 112-210 3-123 (341)
308 PRK11861 bifunctional prephena 95.3 0.03 6.4E-07 58.4 5.9 63 182-245 1-64 (673)
309 PF00899 ThiF: ThiF family; I 95.3 0.047 1E-06 45.0 6.0 32 112-149 3-35 (135)
310 KOG2741 Dimeric dihydrodiol de 95.3 0.09 2E-06 51.2 8.7 86 112-201 7-95 (351)
311 PLN02968 Probable N-acetyl-gam 95.3 0.061 1.3E-06 52.8 7.6 93 112-213 39-135 (381)
312 TIGR00670 asp_carb_tr aspartat 95.2 0.076 1.6E-06 50.6 7.9 71 106-185 146-223 (301)
313 PRK02472 murD UDP-N-acetylmura 95.2 0.1 2.2E-06 50.8 9.0 71 107-186 2-76 (447)
314 TIGR01851 argC_other N-acetyl- 95.2 0.13 2.9E-06 49.4 9.5 79 112-213 2-81 (310)
315 PRK02006 murD UDP-N-acetylmura 95.2 0.073 1.6E-06 53.1 8.0 73 107-188 4-81 (498)
316 PRK06019 phosphoribosylaminoim 95.2 0.039 8.4E-07 53.2 5.8 65 111-184 2-69 (372)
317 PRK10537 voltage-gated potassi 95.1 0.16 3.5E-06 50.1 10.0 92 112-212 241-337 (393)
318 TIGR01758 MDH_euk_cyt malate d 95.1 0.077 1.7E-06 50.8 7.5 69 113-187 1-84 (324)
319 PRK05690 molybdopterin biosynt 95.0 0.11 2.5E-06 47.6 8.3 88 105-199 27-143 (245)
320 PRK14874 aspartate-semialdehyd 95.0 0.094 2E-06 50.2 8.1 89 112-213 2-95 (334)
321 PF00185 OTCace: Aspartate/orn 95.0 0.087 1.9E-06 45.3 6.9 69 109-188 1-83 (158)
322 PLN02602 lactate dehydrogenase 94.9 0.089 1.9E-06 51.1 7.6 66 112-186 38-113 (350)
323 TIGR01202 bchC 2-desacetyl-2-h 94.9 0.16 3.5E-06 47.1 9.1 127 108-251 143-272 (308)
324 cd01485 E1-1_like Ubiquitin ac 94.9 0.16 3.4E-06 45.2 8.6 37 105-148 14-51 (198)
325 PLN02383 aspartate semialdehyd 94.9 0.11 2.4E-06 50.3 8.1 87 112-213 8-101 (344)
326 COG0771 MurD UDP-N-acetylmuram 94.9 0.074 1.6E-06 53.4 7.0 71 106-185 3-76 (448)
327 COG1648 CysG Siroheme synthase 94.8 0.2 4.4E-06 45.4 9.3 79 106-193 8-87 (210)
328 cd05290 LDH_3 A subgroup of L- 94.8 0.054 1.2E-06 51.5 5.8 69 113-187 1-77 (307)
329 TIGR03366 HpnZ_proposed putati 94.8 0.22 4.8E-06 45.3 9.6 93 108-212 119-218 (280)
330 PRK11863 N-acetyl-gamma-glutam 94.8 0.17 3.6E-06 48.7 9.0 78 112-213 3-82 (313)
331 PRK09880 L-idonate 5-dehydroge 94.8 0.33 7.2E-06 45.4 10.9 93 108-211 168-265 (343)
332 PLN00125 Succinyl-CoA ligase [ 94.8 0.15 3.2E-06 48.8 8.6 92 112-217 13-107 (300)
333 PRK05086 malate dehydrogenase; 94.8 0.12 2.5E-06 49.2 7.8 74 112-188 1-79 (312)
334 cd05294 LDH-like_MDH_nadp A la 94.7 0.17 3.8E-06 47.9 8.9 67 112-187 1-81 (309)
335 PRK14027 quinate/shikimate deh 94.7 0.067 1.5E-06 50.3 6.0 76 107-189 124-205 (283)
336 PRK07688 thiamine/molybdopteri 94.7 0.22 4.8E-06 48.0 9.6 90 105-201 19-139 (339)
337 PRK04690 murD UDP-N-acetylmura 94.7 0.11 2.4E-06 51.7 7.8 72 107-188 5-81 (468)
338 cd01483 E1_enzyme_family Super 94.7 0.33 7.1E-06 40.2 9.4 30 113-148 1-31 (143)
339 PRK04284 ornithine carbamoyltr 94.7 0.12 2.7E-06 49.8 7.8 71 106-185 151-231 (332)
340 PF04016 DUF364: Domain of unk 94.7 0.037 8E-07 47.3 3.8 88 106-211 7-94 (147)
341 TIGR01772 MDH_euk_gproteo mala 94.6 0.24 5.1E-06 47.4 9.6 70 113-188 1-77 (312)
342 PLN02520 bifunctional 3-dehydr 94.6 0.08 1.7E-06 53.9 6.8 74 107-189 376-450 (529)
343 cd00704 MDH Malate dehydrogena 94.6 0.14 3.1E-06 49.0 8.0 64 113-186 2-84 (323)
344 PRK12809 putative oxidoreducta 94.6 0.19 4E-06 52.1 9.4 73 109-188 309-405 (639)
345 PLN02586 probable cinnamyl alc 94.6 0.33 7.1E-06 46.2 10.4 93 109-211 183-277 (360)
346 PRK06349 homoserine dehydrogen 94.6 0.12 2.5E-06 51.2 7.6 91 112-210 4-102 (426)
347 PRK15076 alpha-galactosidase; 94.6 0.047 1E-06 54.3 4.8 75 111-188 1-85 (431)
348 PRK14804 ornithine carbamoyltr 94.6 0.17 3.6E-06 48.4 8.3 69 107-186 150-226 (311)
349 COG2344 AT-rich DNA-binding pr 94.6 0.083 1.8E-06 47.9 5.9 79 111-198 84-166 (211)
350 TIGR02822 adh_fam_2 zinc-bindi 94.5 0.29 6.2E-06 45.9 9.8 89 109-211 165-253 (329)
351 COG1063 Tdh Threonine dehydrog 94.5 0.36 7.9E-06 46.2 10.5 132 108-252 167-313 (350)
352 TIGR00658 orni_carb_tr ornithi 94.4 0.23 5.1E-06 47.2 9.0 72 106-186 144-224 (304)
353 PRK08644 thiamine biosynthesis 94.4 0.37 8.1E-06 43.3 9.9 38 105-149 23-61 (212)
354 PRK05671 aspartate-semialdehyd 94.4 0.13 2.8E-06 49.6 7.3 89 111-213 4-98 (336)
355 PRK09414 glutamate dehydrogena 94.4 0.097 2.1E-06 52.6 6.6 36 106-148 228-263 (445)
356 COG2910 Putative NADH-flavin r 94.4 0.16 3.4E-06 46.1 7.2 68 112-188 1-72 (211)
357 PRK04308 murD UDP-N-acetylmura 94.4 0.17 3.7E-06 49.6 8.1 72 108-188 3-79 (445)
358 cd01337 MDH_glyoxysomal_mitoch 94.3 0.13 2.9E-06 49.1 7.0 70 112-187 1-77 (310)
359 TIGR02355 moeB molybdopterin s 94.3 0.2 4.4E-06 46.0 7.9 88 105-199 19-135 (240)
360 PRK08328 hypothetical protein; 94.3 0.31 6.6E-06 44.3 9.1 36 105-147 22-58 (231)
361 PRK00856 pyrB aspartate carbam 94.2 0.17 3.7E-06 48.3 7.6 67 106-186 152-221 (305)
362 PRK12562 ornithine carbamoyltr 94.2 0.19 4E-06 48.7 7.9 71 107-186 153-233 (334)
363 TIGR01318 gltD_gamma_fam gluta 94.2 0.24 5.2E-06 49.3 8.9 73 109-188 140-236 (467)
364 TIGR00978 asd_EA aspartate-sem 94.2 0.24 5.3E-06 47.4 8.6 93 112-213 1-105 (341)
365 cd08237 ribitol-5-phosphate_DH 94.1 0.44 9.5E-06 44.8 10.1 91 109-211 163-255 (341)
366 PRK01713 ornithine carbamoyltr 94.1 0.19 4.1E-06 48.6 7.7 71 107-186 153-233 (334)
367 CHL00194 ycf39 Ycf39; Provisio 94.0 0.25 5.5E-06 45.9 8.2 69 112-187 1-73 (317)
368 PLN00106 malate dehydrogenase 94.0 0.16 3.4E-06 48.9 6.9 131 112-251 19-178 (323)
369 PRK12771 putative glutamate sy 94.0 0.17 3.6E-06 51.4 7.5 75 107-188 134-232 (564)
370 TIGR01771 L-LDH-NAD L-lactate 93.9 0.3 6.5E-06 46.2 8.6 62 116-187 1-73 (299)
371 PRK05562 precorrin-2 dehydroge 93.9 0.64 1.4E-05 42.7 10.4 83 106-197 21-104 (223)
372 PRK05597 molybdopterin biosynt 93.9 0.24 5.3E-06 47.9 8.1 88 105-199 23-139 (355)
373 PRK02102 ornithine carbamoyltr 93.9 0.23 5E-06 48.0 7.8 72 106-186 151-232 (331)
374 KOG0022 Alcohol dehydrogenase, 93.9 0.11 2.4E-06 50.6 5.5 128 108-252 191-340 (375)
375 PLN00141 Tic62-NAD(P)-related 93.8 0.52 1.1E-05 42.1 9.5 76 106-188 13-95 (251)
376 PF03447 NAD_binding_3: Homose 93.8 0.32 6.9E-06 38.9 7.3 83 118-210 1-88 (117)
377 PRK08664 aspartate-semialdehyd 93.8 0.28 6.1E-06 47.2 8.2 90 112-213 4-108 (349)
378 PRK12550 shikimate 5-dehydroge 93.7 0.17 3.7E-06 47.4 6.5 66 110-189 122-189 (272)
379 PRK08762 molybdopterin biosynt 93.7 0.44 9.6E-06 46.2 9.5 89 106-201 131-248 (376)
380 PRK05600 thiamine biosynthesis 93.7 0.29 6.3E-06 47.8 8.2 89 105-200 36-153 (370)
381 cd01487 E1_ThiF_like E1_ThiF_l 93.7 0.52 1.1E-05 41.0 9.0 31 113-149 1-32 (174)
382 COG0078 ArgF Ornithine carbamo 93.6 0.25 5.5E-06 47.5 7.5 70 108-188 151-231 (310)
383 PRK03515 ornithine carbamoyltr 93.6 0.28 6.1E-06 47.5 7.9 70 107-185 153-232 (336)
384 KOG3007 Mu-crystallin [Amino a 93.5 0.13 2.9E-06 49.0 5.4 97 112-216 139-241 (333)
385 PRK15182 Vi polysaccharide bio 93.5 0.52 1.1E-05 46.8 9.9 95 106-215 310-416 (425)
386 PRK14573 bifunctional D-alanyl 93.5 0.23 4.9E-06 52.8 7.8 66 111-185 4-70 (809)
387 PLN03075 nicotianamine synthas 93.5 0.3 6.6E-06 46.6 7.8 119 86-211 99-232 (296)
388 PRK07200 aspartate/ornithine c 93.5 0.29 6.3E-06 48.5 7.9 71 107-186 184-270 (395)
389 PRK03806 murD UDP-N-acetylmura 93.5 0.31 6.6E-06 47.6 8.1 69 107-184 3-71 (438)
390 COG1004 Ugd Predicted UDP-gluc 93.5 0.22 4.7E-06 49.6 6.9 86 108-210 308-406 (414)
391 PRK00779 ornithine carbamoyltr 93.5 0.3 6.6E-06 46.5 7.8 71 106-185 148-224 (304)
392 PRK02318 mannitol-1-phosphate 93.5 0.17 3.6E-06 49.2 6.2 80 112-198 1-100 (381)
393 PRK12769 putative oxidoreducta 93.4 0.3 6.6E-06 50.6 8.3 72 109-187 326-421 (654)
394 COG1062 AdhC Zn-dependent alco 93.4 0.95 2.1E-05 44.4 11.1 130 109-252 185-331 (366)
395 PRK05786 fabG 3-ketoacyl-(acyl 93.4 1.1 2.3E-05 39.0 10.6 38 107-151 2-40 (238)
396 PRK08040 putative semialdehyde 93.4 0.18 3.9E-06 48.8 6.2 89 112-213 5-98 (336)
397 PRK08223 hypothetical protein; 93.4 0.52 1.1E-05 44.9 9.2 37 105-148 22-59 (287)
398 COG0002 ArgC Acetylglutamate s 93.2 0.66 1.4E-05 45.4 9.7 98 111-216 2-106 (349)
399 KOG0023 Alcohol dehydrogenase, 93.2 0.29 6.3E-06 47.7 7.2 94 109-210 181-277 (360)
400 PRK13814 pyrB aspartate carbam 93.2 0.41 8.8E-06 45.9 8.2 66 107-184 154-223 (310)
401 PRK07878 molybdopterin biosynt 93.2 0.41 8.8E-06 46.9 8.3 36 105-147 37-73 (392)
402 PLN02342 ornithine carbamoyltr 93.1 0.37 8E-06 47.0 7.9 70 106-186 190-267 (348)
403 PRK10637 cysG siroheme synthas 93.1 0.64 1.4E-05 46.4 9.8 79 106-193 8-87 (457)
404 COG2227 UbiG 2-polyprenyl-3-me 93.1 0.76 1.7E-05 42.9 9.5 91 108-211 58-160 (243)
405 KOG2305 3-hydroxyacyl-CoA dehy 93.1 0.26 5.6E-06 46.3 6.4 94 112-211 4-119 (313)
406 PRK03803 murD UDP-N-acetylmura 93.0 0.32 7E-06 47.7 7.5 69 112-188 7-80 (448)
407 PRK06197 short chain dehydroge 93.0 0.99 2.1E-05 41.5 10.3 48 95-150 2-50 (306)
408 TIGR01087 murD UDP-N-acetylmur 93.0 0.27 5.8E-06 47.9 6.8 67 113-188 1-74 (433)
409 PRK14031 glutamate dehydrogena 92.9 0.57 1.2E-05 47.2 9.1 36 106-148 224-259 (444)
410 TIGR02819 fdhA_non_GSH formald 92.9 1.2 2.6E-05 43.3 11.1 97 108-211 184-298 (393)
411 cd01486 Apg7 Apg7 is an E1-lik 92.8 0.31 6.7E-06 46.9 6.8 21 113-133 1-21 (307)
412 PLN02178 cinnamyl-alcohol dehy 92.8 1.1 2.3E-05 43.2 10.5 92 109-211 178-272 (375)
413 PLN02527 aspartate carbamoyltr 92.8 0.44 9.4E-06 45.5 7.7 73 106-186 147-226 (306)
414 COG0136 Asd Aspartate-semialde 92.6 0.76 1.6E-05 44.7 9.2 93 112-213 2-98 (334)
415 COG0289 DapB Dihydrodipicolina 92.6 1.1 2.4E-05 42.3 10.0 117 111-240 2-127 (266)
416 TIGR01757 Malate-DH_plant mala 92.6 1 2.2E-05 44.6 10.2 22 112-133 45-67 (387)
417 PRK06728 aspartate-semialdehyd 92.6 0.51 1.1E-05 46.0 8.0 88 112-213 6-100 (347)
418 cd05188 MDR Medium chain reduc 92.6 1.9 4.1E-05 37.5 11.0 93 108-211 133-231 (271)
419 PRK12828 short chain dehydroge 92.6 1.4 3.1E-05 37.8 10.1 38 107-151 4-42 (239)
420 cd05313 NAD_bind_2_Glu_DH NAD( 92.5 0.2 4.4E-06 46.8 5.0 35 106-147 34-69 (254)
421 PRK08374 homoserine dehydrogen 92.5 1 2.2E-05 43.4 9.9 95 112-209 3-119 (336)
422 PRK08265 short chain dehydroge 92.5 1.4 3E-05 39.5 10.2 38 106-150 2-40 (261)
423 PRK06598 aspartate-semialdehyd 92.5 0.33 7.1E-06 47.7 6.6 91 111-213 1-99 (369)
424 PLN02514 cinnamyl-alcohol dehy 92.4 1.2 2.5E-05 42.3 10.1 93 109-211 180-274 (357)
425 TIGR03316 ygeW probable carbam 92.4 0.47 1E-05 46.4 7.5 71 107-186 167-253 (357)
426 PRK07411 hypothetical protein; 92.4 0.46 1E-05 46.6 7.5 88 105-199 33-149 (390)
427 TIGR01161 purK phosphoribosyla 92.3 0.3 6.5E-06 46.4 6.0 62 113-184 1-66 (352)
428 PRK09242 tropinone reductase; 92.3 1.4 2.9E-05 39.1 9.8 37 107-150 6-43 (257)
429 COG0334 GdhA Glutamate dehydro 92.2 0.48 1E-05 47.2 7.5 39 106-151 203-241 (411)
430 COG0039 Mdh Malate/lactate deh 92.2 0.28 6.1E-06 47.2 5.7 71 112-186 1-77 (313)
431 PLN00112 malate dehydrogenase 92.2 0.74 1.6E-05 46.3 8.9 75 112-187 101-185 (444)
432 PRK06057 short chain dehydroge 92.2 0.9 2E-05 40.3 8.6 38 106-150 3-41 (255)
433 PLN02948 phosphoribosylaminoim 92.2 0.3 6.5E-06 50.4 6.2 73 105-188 17-93 (577)
434 PF03059 NAS: Nicotianamine sy 92.2 0.78 1.7E-05 43.5 8.5 99 112-215 122-235 (276)
435 TIGR01296 asd_B aspartate-semi 92.2 0.37 8E-06 46.4 6.5 88 113-213 1-93 (339)
436 PRK06463 fabG 3-ketoacyl-(acyl 92.1 1.1 2.4E-05 39.7 9.0 37 107-150 4-41 (255)
437 cd00755 YgdL_like Family of ac 92.1 2.2 4.8E-05 39.1 11.1 37 105-148 6-43 (231)
438 PRK06114 short chain dehydroge 92.1 1.8 4E-05 38.4 10.4 37 107-150 5-42 (254)
439 TIGR03201 dearomat_had 6-hydro 92.1 1.1 2.5E-05 41.9 9.6 92 109-211 166-271 (349)
440 PRK07231 fabG 3-ketoacyl-(acyl 92.1 0.32 6.9E-06 42.5 5.4 38 107-151 2-40 (251)
441 COG0540 PyrB Aspartate carbamo 92.0 1.1 2.4E-05 43.2 9.4 70 106-185 154-231 (316)
442 PRK08192 aspartate carbamoyltr 92.0 0.66 1.4E-05 45.0 7.9 71 107-185 156-233 (338)
443 PRK06392 homoserine dehydrogen 91.9 0.5 1.1E-05 45.5 7.0 98 112-209 1-113 (326)
444 COG5495 Uncharacterized conser 91.9 0.4 8.6E-06 45.0 6.0 119 112-249 11-134 (289)
445 PRK06182 short chain dehydroge 91.9 1.4 3.1E-05 39.5 9.6 71 109-187 2-83 (273)
446 PRK07060 short chain dehydroge 91.8 0.78 1.7E-05 40.0 7.6 74 107-187 6-86 (245)
447 PRK11891 aspartate carbamoyltr 91.8 0.69 1.5E-05 46.4 8.0 71 108-186 239-316 (429)
448 PRK13984 putative oxidoreducta 91.8 0.65 1.4E-05 47.5 8.1 72 109-187 282-377 (604)
449 PRK00961 H(2)-dependent methyl 91.8 0.34 7.5E-06 46.4 5.6 74 158-238 125-203 (342)
450 cd01491 Ube1_repeat1 Ubiquitin 91.8 0.64 1.4E-05 44.1 7.5 38 105-149 14-52 (286)
451 PRK10309 galactitol-1-phosphat 91.7 1.3 2.9E-05 41.2 9.5 93 109-211 160-259 (347)
452 TIGR01082 murC UDP-N-acetylmur 91.7 0.53 1.1E-05 46.3 7.1 63 113-184 1-64 (448)
453 PRK12939 short chain dehydroge 91.5 1.8 3.9E-05 37.7 9.5 38 106-150 3-41 (250)
454 TIGR01723 hmd_TIGR 5,10-methen 91.5 0.41 8.9E-06 45.9 5.8 74 158-238 123-201 (340)
455 cd08239 THR_DH_like L-threonin 91.5 1.8 3.9E-05 40.0 10.1 93 108-211 162-261 (339)
456 PRK07825 short chain dehydroge 91.4 1.8 3.9E-05 38.7 9.7 37 107-150 2-39 (273)
457 PRK02255 putrescine carbamoylt 91.4 0.85 1.8E-05 44.2 8.0 71 107-186 151-230 (338)
458 PRK12810 gltD glutamate syntha 91.3 0.81 1.8E-05 45.4 8.1 74 107-187 140-237 (471)
459 TIGR03451 mycoS_dep_FDH mycoth 91.3 2.2 4.7E-05 40.2 10.6 92 109-211 176-275 (358)
460 PRK05717 oxidoreductase; Valid 91.2 2 4.3E-05 38.1 9.7 37 107-150 7-44 (255)
461 PRK02705 murD UDP-N-acetylmura 91.2 0.87 1.9E-05 44.6 8.1 66 113-184 2-74 (459)
462 PRK06500 short chain dehydroge 91.2 2.1 4.6E-05 37.3 9.7 36 107-149 3-39 (249)
463 PRK05867 short chain dehydroge 91.2 0.72 1.6E-05 40.8 6.8 38 106-150 5-43 (253)
464 TIGR01532 E4PD_g-proteo D-eryt 91.1 0.92 2E-05 43.7 7.9 21 113-133 1-21 (325)
465 PRK08589 short chain dehydroge 91.1 2.4 5.1E-05 38.3 10.2 37 106-149 2-39 (272)
466 PRK07326 short chain dehydroge 91.1 0.64 1.4E-05 40.4 6.4 37 108-151 4-41 (237)
467 PRK07774 short chain dehydroge 91.1 2 4.3E-05 37.6 9.5 38 106-150 2-40 (250)
468 PLN03209 translocon at the inn 91.1 0.55 1.2E-05 48.8 6.7 75 106-187 76-168 (576)
469 PLN02662 cinnamyl-alcohol dehy 91.1 0.89 1.9E-05 41.6 7.5 72 109-187 3-85 (322)
470 cd08255 2-desacetyl-2-hydroxye 91.1 2.2 4.9E-05 38.0 10.0 91 108-211 96-189 (277)
471 PF10100 DUF2338: Uncharacteri 91.1 2.2 4.7E-05 42.8 10.5 98 111-215 1-122 (429)
472 PRK11064 wecC UDP-N-acetyl-D-m 91.0 0.67 1.4E-05 45.7 7.0 75 106-193 316-401 (415)
473 PRK06935 2-deoxy-D-gluconate 3 91.0 2.7 5.8E-05 37.3 10.3 42 101-149 6-48 (258)
474 PRK12825 fabG 3-ketoacyl-(acyl 91.0 2.4 5.3E-05 36.4 9.8 38 107-151 3-41 (249)
475 PLN02827 Alcohol dehydrogenase 91.0 2.1 4.5E-05 41.1 10.2 92 109-210 193-293 (378)
476 PRK12814 putative NADPH-depend 91.0 0.89 1.9E-05 47.3 8.2 74 108-188 191-288 (652)
477 cd05283 CAD1 Cinnamyl alcohol 91.0 1.6 3.6E-05 40.4 9.3 92 108-211 168-262 (337)
478 TIGR02853 spore_dpaA dipicolin 90.9 0.69 1.5E-05 43.5 6.8 90 111-216 1-102 (287)
479 PRK05854 short chain dehydroge 90.9 2.1 4.6E-05 39.9 10.0 39 105-150 9-48 (313)
480 PRK07806 short chain dehydroge 90.9 3 6.6E-05 36.5 10.5 37 107-150 3-40 (248)
481 PRK14805 ornithine carbamoyltr 90.9 0.76 1.6E-05 43.8 7.1 71 106-186 143-222 (302)
482 TIGR03325 BphB_TodD cis-2,3-di 90.9 2.3 4.9E-05 37.9 9.8 36 108-150 3-39 (262)
483 PRK15116 sulfur acceptor prote 90.9 1.3 2.9E-05 41.6 8.6 37 105-148 25-62 (268)
484 PRK07478 short chain dehydroge 90.9 2.2 4.8E-05 37.7 9.6 37 107-150 3-40 (254)
485 PLN02477 glutamate dehydrogena 90.9 0.35 7.6E-06 48.1 4.9 36 106-148 202-238 (410)
486 PRK13394 3-hydroxybutyrate deh 90.8 2.1 4.6E-05 37.6 9.5 38 106-150 3-41 (262)
487 PRK12937 short chain dehydroge 90.8 2.3 4.9E-05 37.0 9.5 37 107-150 2-39 (245)
488 PRK04523 N-acetylornithine car 90.8 1.1 2.3E-05 43.4 8.1 71 107-186 165-252 (335)
489 PRK07523 gluconate 5-dehydroge 90.7 2.1 4.5E-05 37.8 9.3 37 107-150 7-44 (255)
490 PRK01368 murD UDP-N-acetylmura 90.6 0.87 1.9E-05 45.4 7.5 65 108-184 4-69 (454)
491 PRK08936 glucose-1-dehydrogena 90.5 2.7 5.9E-05 37.3 10.0 38 106-150 3-41 (261)
492 cd08298 CAD2 Cinnamyl alcohol 90.4 2.1 4.6E-05 39.1 9.4 88 109-210 167-254 (329)
493 PRK12829 short chain dehydroge 90.4 1.6 3.6E-05 38.4 8.4 38 106-150 7-45 (264)
494 cd08281 liver_ADH_like1 Zinc-d 90.3 2.4 5.1E-05 40.2 9.9 91 109-210 191-288 (371)
495 PRK05876 short chain dehydroge 90.3 2.1 4.7E-05 38.9 9.3 39 105-150 1-40 (275)
496 TIGR01745 asd_gamma aspartate- 90.3 0.71 1.5E-05 45.4 6.4 91 112-213 1-98 (366)
497 TIGR03649 ergot_EASG ergot alk 90.3 0.44 9.5E-06 43.2 4.7 66 113-188 1-77 (285)
498 TIGR02469 CbiT precorrin-6Y C5 90.3 5.8 0.00013 30.7 10.6 94 109-210 19-120 (124)
499 TIGR01832 kduD 2-deoxy-D-gluco 90.2 2.8 6.1E-05 36.7 9.7 36 107-149 2-38 (248)
500 PRK04663 murD UDP-N-acetylmura 90.2 1.2 2.6E-05 43.8 8.0 75 106-188 2-80 (438)
No 1
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=100.00 E-value=1.7e-38 Score=274.89 Aligned_cols=153 Identities=43% Similarity=0.666 Sum_probs=129.5
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|+| |+|+|||||++|.++|+|||++ |++|++++|+++++++.|++.||. ..+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 678 9999999999999999999999 999999999998899999999999 4699999999999999999
Q ss_pred ChhHHHHHH-HHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEEee
Q 023490 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (281)
Q Consensus 188 ~~~~~~vl~-ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~av~ 266 (281)
|..+.++++ ++.++||+|++|+.+|||++.+- .+.+|++++|+.++|++||+.|||+|++| .|+|++||||
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~---~i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYG---LIKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCT---TS---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcC---cccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 89999999999999999998543 35778999999999999999999999998 6999999999
Q ss_pred eCCCcchhhhhhcc
Q 023490 267 QVLSEPLFHLCVGL 280 (281)
Q Consensus 267 ~d~~g~a~~~~~~~ 280 (281)
||+||+|+|+||+|
T Consensus 142 qD~sg~A~~~ala~ 155 (165)
T PF07991_consen 142 QDASGKAKELALAY 155 (165)
T ss_dssp E-SSS-HHHHHHHH
T ss_pred ECCCchHHHHHHHH
Confidence 99999999999998
No 2
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=100.00 E-value=6.7e-37 Score=299.79 Aligned_cols=186 Identities=31% Similarity=0.447 Sum_probs=163.8
Q ss_pred ccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 71 LLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 71 ~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+.|||+..|+.+..+ .+..+. +. |-.|+++...|+| |+|+|||+|+||.++|.+|+++ |++|+|+.|++
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~r~-~~--r~ef~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvvglr~~ 69 (487)
T PRK05225 1 ANYFNTLNLRQQLAQ-LGKCRF-MD--RDEFADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISYALRKE 69 (487)
T ss_pred CCccccccHHHHHHH-hcccee-cc--hhhccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEEecccc
Confidence 369999999965444 344434 22 1257777789999 9999999999999999999999 99999999986
Q ss_pred -----cccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccC
Q 023490 151 -----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLD 225 (281)
Q Consensus 151 -----~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~ 225 (281)
+++.+.|.+.|+. ..+.+|++++||+|++++|+..+..++++++++||+|++|..+|||++.+. ++.
T Consensus 70 ~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~---~i~ 141 (487)
T PRK05225 70 AIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV---GEQ 141 (487)
T ss_pred ccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC---cee
Confidence 4678888889997 458999999999999999999777788899999999999999999998654 458
Q ss_pred CCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEEee--eCCCcchhhhhhcc
Q 023490 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QVLSEPLFHLCVGL 280 (281)
Q Consensus 226 ~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~av~--~d~~g~a~~~~~~~ 280 (281)
+|+|++||.|+|++||++||++|++| +|+|++|||| ||++|+|+|+||+|
T Consensus 142 ~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~ 193 (487)
T PRK05225 142 IRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAW 193 (487)
T ss_pred CCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHH
Confidence 89999999999999999999999998 7999999999 89999999999998
No 3
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.3e-36 Score=280.15 Aligned_cols=155 Identities=40% Similarity=0.652 Sum_probs=147.4
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.-|+| |||+|||+|++|.++|+|||++ |.+|+|+.|+++.+++.|++.|+. ..+.+|++++||+|+++
T Consensus 14 ~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ADvim~L 81 (338)
T COG0059 14 DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRADVVMIL 81 (338)
T ss_pred hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCCEEEEe
Confidence 45899 9999999999999999999999 999999999999999999999999 46999999999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEE
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~a 264 (281)
+||..+.++++ ++.|.|+.|+.|..+|||++.+-. +.+|+|++||.|+|++||+.||+.|++| +|+|++||
T Consensus 82 ~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~---i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~GvP~LiA 153 (338)
T COG0059 82 LPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGL---IVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGVPALIA 153 (338)
T ss_pred CchhhHHHHHHHHhhhhhcCCceEEeccccceecce---ecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCceeEEE
Confidence 99999999998 899999999999999999986643 4789999999999999999999999998 79999999
Q ss_pred eeeCCCcchhhhhhcc
Q 023490 265 VHQVLSEPLFHLCVGL 280 (281)
Q Consensus 265 v~~d~~g~a~~~~~~~ 280 (281)
||||+||+|+|+||+|
T Consensus 154 V~qD~sG~a~~~Ala~ 169 (338)
T COG0059 154 VHQDASGKALDIALAY 169 (338)
T ss_pred EEeCCCchHHHHHHHH
Confidence 9999999999999998
No 4
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=1.6e-35 Score=280.47 Aligned_cols=155 Identities=36% Similarity=0.600 Sum_probs=141.2
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
...|+| |||||||+|+||.++|++|+++ |++|++++++ .++.+.+...|+. ..+++|++++||+|++
T Consensus 11 ~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~l 77 (335)
T PRK13403 11 VELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQM 77 (335)
T ss_pred hhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEEE
Confidence 478999 9999999999999999999999 9999999876 4556667778886 3489999999999999
Q ss_pred ccCChhHHHHHH-HHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEE
Q 023490 185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (281)
Q Consensus 185 avP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~ 263 (281)
++|+..+.++++ +++++||+|++|+.+|||++.+-+ +.+|+|++||.|+|++||+.|||+|++| +|+|++|
T Consensus 78 lLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~~---i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l~ 149 (335)
T PRK13403 78 LLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPALV 149 (335)
T ss_pred eCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecCc---eeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeEE
Confidence 999977777887 799999999999999999996543 5789999999999999999999999998 7999999
Q ss_pred EeeeCCCcchhhhhhcc
Q 023490 264 AVHQVLSEPLFHLCVGL 280 (281)
Q Consensus 264 av~~d~~g~a~~~~~~~ 280 (281)
|||||+||+|+|+||+|
T Consensus 150 av~qd~sg~a~~~ala~ 166 (335)
T PRK13403 150 AVHQDATGTALHVALAY 166 (335)
T ss_pred EEEECCCCcHHHHHHHH
Confidence 99999999999999998
No 5
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.97 E-value=1.7e-31 Score=253.77 Aligned_cols=157 Identities=39% Similarity=0.586 Sum_probs=144.7
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
...|+| ++|||||+|+||.++|++|+++ |++|+++++++.++.+.+.+.|+.. .+.+|++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEEE
Confidence 467899 9999999999999999999999 9999999888777777788888873 489999999999999
Q ss_pred ccCChhHHHHH-HHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEE
Q 023490 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (281)
Q Consensus 185 avP~~~~~~vl-~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~ 263 (281)
++|++.+..++ ++++++|++|++|+++|||++.+++. .+|++++||++|||+|+..||+.|++| .|+|+++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999998898 58999999999999999999988775 778999999999999999999999998 6999999
Q ss_pred EeeeCCCcchhhhhhccC
Q 023490 264 AVHQVLSEPLFHLCVGLL 281 (281)
Q Consensus 264 av~~d~~g~a~~~~~~~~ 281 (281)
||+||+||+++|++++|+
T Consensus 152 av~~d~t~~a~~~a~~l~ 169 (330)
T PRK05479 152 AVHQDASGNAKDLALAYA 169 (330)
T ss_pred EecCCCCHHHHHHHHHHH
Confidence 999999999999999874
No 6
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.97 E-value=1.9e-30 Score=244.89 Aligned_cols=154 Identities=38% Similarity=0.607 Sum_probs=137.4
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|+| |+|||||+|+||.++|++|+++ |++|++++++..++.+.+.+.|+.. .++.|++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~~-----~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFKV-----GTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCEE-----CCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 9998888877655666677788863 468899999999999999
Q ss_pred ChhHHH-HHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEEee
Q 023490 188 DAAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (281)
Q Consensus 188 ~~~~~~-vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~av~ 266 (281)
|+.+.. +++++.+.++++.+|+++|||++.+++. .+|++.+|||+|||+|+..|||+|++| .|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 985555 4557999999999999999999999886 778899999999999999999999998 6999999999
Q ss_pred eCCCcchhhhhhccC
Q 023490 267 QVLSEPLFHLCVGLL 281 (281)
Q Consensus 267 ~d~~g~a~~~~~~~~ 281 (281)
||++|++++++++|+
T Consensus 141 ~~~~~~~~~~~~~~~ 155 (314)
T TIGR00465 141 QDPTGEAMAIALAYA 155 (314)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999874
No 7
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.75 E-value=5.8e-18 Score=156.62 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=95.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc----EEEEEecCCcccHHHHH-HCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~----~Viig~r~~~~s~~~A~-~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++|||||+|+||.+++++|.+. |+ +|++++|..+ ..+.+. +.|+.. ..+..|++++||+|||++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~~~-~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLNVS-NLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCCHH-HHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999987 64 5777766543 334433 477653 457888999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
||+...++++++.+.++++++| ++++|++++++++ .++...+|+|+|||+|-
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~ 124 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPV 124 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHH
Confidence 9988888999998989988765 5899999999997 66666789999999984
No 8
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.75 E-value=3.9e-18 Score=162.12 Aligned_cols=148 Identities=25% Similarity=0.275 Sum_probs=116.1
Q ss_pred hcccchhhhhcCCCccc-----ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC
Q 023490 86 LANRDEFIVRGGRDLFK-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (281)
Q Consensus 86 ~~~~~e~~vr~G~W~f~-----~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~ 160 (281)
+..+++. +|.|.|... +...+++| ||+||||+|.||+++|++++.| ||+|+++++++. .+..++.
T Consensus 118 ~~~~~~~-~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~~ 187 (324)
T COG1052 118 IHEGDRR-VREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKEL 187 (324)
T ss_pred hHHHHHH-HhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhhc
Confidence 4444444 999999764 33468999 9999999999999999999988 999999988753 2333444
Q ss_pred CceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCce
Q 023490 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIG 231 (281)
Q Consensus 161 G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~ 231 (281)
++. +.+++|++++||+|+||||.+..++ +++ +.++.||+|++|| .+.|-.+ ..+++ |.+....++
T Consensus 188 ~~~-----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~-g~i~gaglD 261 (324)
T COG1052 188 GAR-----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS-GKIAGAGLD 261 (324)
T ss_pred Cce-----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCcceEEee
Confidence 455 4469999999999999999999876 887 8999999999998 5667443 34554 555567899
Q ss_pred EEEeccCCCChhhHHhhh
Q 023490 232 VIAVCPKGMGPSVRRLYV 249 (281)
Q Consensus 232 VIrvmPntpg~~vr~~y~ 249 (281)
|+.-.|+....+++++-.
T Consensus 262 V~e~Ep~~~d~~l~~l~~ 279 (324)
T COG1052 262 VFENEPALFDHPLLRLDN 279 (324)
T ss_pred ecCCCCCCCChhHhhccC
Confidence 999999877777765543
No 9
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.75 E-value=2.3e-18 Score=163.67 Aligned_cols=146 Identities=21% Similarity=0.241 Sum_probs=114.3
Q ss_pred hcccchhhhhcCCCcc-cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee
Q 023490 86 LANRDEFIVRGGRDLF-KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (281)
Q Consensus 86 ~~~~~e~~vr~G~W~f-~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~ 164 (281)
+..|++. +|+|.|.. .+...+|.| ||+||||+|+||+.+|+.++.+ ||+|+.+++...+ +.+...++..
T Consensus 118 ~~~~~~~-~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~--~~~~~~~~~~ 187 (324)
T COG0111 118 IPDADAS-QRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPR--ERAGVDGVVG 187 (324)
T ss_pred chhhHHH-HHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCch--hhhcccccee
Confidence 4455555 79999986 223369999 9999999999999999999999 9999988875433 2333344442
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEe
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrv 235 (281)
..++++++++||+|++|+|.++.++ +++ +.+..||+|++|| .+.|-.+ ..+++ |.+....++|+.-
T Consensus 188 ----~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~-G~i~gA~lDVf~~ 262 (324)
T COG0111 188 ----VDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDS-GKIAGAALDVFEE 262 (324)
T ss_pred ----cccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHc-CCcceEEecCCCC
Confidence 4589999999999999999999886 887 8999999999988 4566443 44664 5555678899999
Q ss_pred ccCCCChhhHH
Q 023490 236 CPKGMGPSVRR 246 (281)
Q Consensus 236 mPntpg~~vr~ 246 (281)
.|..+++++++
T Consensus 263 EPl~~~~pL~~ 273 (324)
T COG0111 263 EPLPADSPLWD 273 (324)
T ss_pred CCCCCCChhhc
Confidence 99999877753
No 10
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.72 E-value=4.2e-18 Score=147.71 Aligned_cols=144 Identities=22% Similarity=0.257 Sum_probs=105.3
Q ss_pred cccchhhhhcCCC--cccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee
Q 023490 87 ANRDEFIVRGGRD--LFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (281)
Q Consensus 87 ~~~~e~~vr~G~W--~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~ 164 (281)
..+.+. +++|.| .......++.| ++|||||+|+||+++|+.++.+ ||+|+++++.... .......++.
T Consensus 12 ~~~~~~-~~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~~-~~~~~~~~~~- 81 (178)
T PF02826_consen 12 PEYHEA-QRNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPKP-EEGADEFGVE- 81 (178)
T ss_dssp HHHHHH-HHTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCHH-HHHHHHTTEE-
T ss_pred HHHHHH-HHcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCCh-hhhcccccce-
Confidence 334545 899999 22223589999 9999999999999999999999 9999999887542 2235566775
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEe
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrv 235 (281)
..+++|++++||+|++|+|.++.++ +++ +.+..||+|++|+ ++.|-.+ ..+++ +......+||+.-
T Consensus 82 ----~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~~ 156 (178)
T PF02826_consen 82 ----YVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES-GKIAGAALDVFEP 156 (178)
T ss_dssp ----ESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT-TSEEEEEESS-SS
T ss_pred ----eeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh-ccCceEEEECCCC
Confidence 4699999999999999999988875 787 8999999999988 4666433 33443 3333456678888
Q ss_pred ccCCCChhhH
Q 023490 236 CPKGMGPSVR 245 (281)
Q Consensus 236 mPntpg~~vr 245 (281)
.|-.+..+++
T Consensus 157 EP~~~~~~l~ 166 (178)
T PF02826_consen 157 EPLPADSPLW 166 (178)
T ss_dssp SSSSTTHHHH
T ss_pred CCCCCCChHH
Confidence 8877776664
No 11
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.71 E-value=4e-17 Score=151.57 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=99.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCC----cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G----~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
+++|||||.|+||.+++.+|.+. | .+|++.+|..++..+.+.++|+.. ..+..+++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 47999999999999999999999 7 478888887655445677887762 457889999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcE-EEEeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaI-Li~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
+|+...+++.++.+ ..++++ |++++|+.+..++. .++ +.+|+|+|||+|..
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~ 122 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPAL 122 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHH
Confidence 99999999998888 666765 56999999999998 777 89999999999863
No 12
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.70 E-value=3.4e-17 Score=155.23 Aligned_cols=143 Identities=17% Similarity=0.249 Sum_probs=107.5
Q ss_pred cccchhhhhcCCCccc----ccccccCCCcEEEEEccCchHHHHHHHHH-hhhhhccCCcEEEEEecCCcccHHHHHHCC
Q 023490 87 ANRDEFIVRGGRDLFK----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f~----~~~~~l~G~ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Viig~r~~~~s~~~A~~~G 161 (281)
..+++. +|+|+|... +...+|.| ||+||||+|+||+.+|+.++ .+ ||+|+++++.... +...+.+
T Consensus 119 ~~~~~~-~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~~--~~~~~~~ 188 (323)
T PRK15409 119 VEVAER-VKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHHK--EAEERFN 188 (323)
T ss_pred HHHHHH-HHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCch--hhHHhcC
Confidence 334444 899999632 12368999 99999999999999999998 77 9999877765321 2223455
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceE
Q 023490 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGV 232 (281)
Q Consensus 162 ~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~V 232 (281)
+. ..+++|++++||+|++|+|.++.++ +++ +.+..||||++|| .+.|-.+ ..+++ |.+.+..+||
T Consensus 189 ~~-----~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDV 262 (323)
T PRK15409 189 AR-----YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQK-GEIHAAGLDV 262 (323)
T ss_pred cE-----ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeec
Confidence 54 4589999999999999999999876 787 8999999999998 5666443 34553 4444566788
Q ss_pred EEeccCCCChhhH
Q 023490 233 IAVCPKGMGPSVR 245 (281)
Q Consensus 233 IrvmPntpg~~vr 245 (281)
+.-.|..+.++++
T Consensus 263 f~~EP~~~~~pL~ 275 (323)
T PRK15409 263 FEQEPLSVDSPLL 275 (323)
T ss_pred CCCCCCCCCchhh
Confidence 8888876666664
No 13
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.68 E-value=7.1e-17 Score=152.06 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=106.8
Q ss_pred cchhhhhcCCCcccc-------cccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC
Q 023490 89 RDEFIVRGGRDLFKL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (281)
Q Consensus 89 ~~e~~vr~G~W~f~~-------~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G 161 (281)
+++. +|+|+|.... ...+|.| |||||||+|+||+.+|+.++.+ ||+|+++++.... ...+
T Consensus 118 ~~~~-~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~~~~ 184 (311)
T PRK08410 118 YDRY-VKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----KNEE 184 (311)
T ss_pred HHHH-HHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----cccC
Confidence 3444 8999996321 1368999 9999999999999999999998 9999888775321 1234
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceE
Q 023490 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGV 232 (281)
Q Consensus 162 ~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~V 232 (281)
+. ..+++|++++||+|++|+|.++.++ +++ +.++.||||++|| .+.|-.+ ..+++ |.+. ..+||
T Consensus 185 ~~-----~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~-g~i~-AaLDV 257 (311)
T PRK08410 185 YE-----RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDE-KDIY-AGLDV 257 (311)
T ss_pred ce-----eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCeE-EEEec
Confidence 44 4589999999999999999998876 887 8999999999998 5677443 34554 4444 67889
Q ss_pred EEeccCCCChhhHH
Q 023490 233 IAVCPKGMGPSVRR 246 (281)
Q Consensus 233 IrvmPntpg~~vr~ 246 (281)
+.-.|..+.++++.
T Consensus 258 ~~~EP~~~~~pL~~ 271 (311)
T PRK08410 258 LEKEPMEKNHPLLS 271 (311)
T ss_pred CCCCCCCCCChhhc
Confidence 99999877777754
No 14
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.65 E-value=2.6e-16 Score=148.52 Aligned_cols=141 Identities=17% Similarity=0.145 Sum_probs=107.2
Q ss_pred cccchhhhhcCCCccc-------ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH
Q 023490 87 ANRDEFIVRGGRDLFK-------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f~-------~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~ 159 (281)
..+.+. +++|+|... ....+|.| |||||||+|.||+.+|+.++.+ ||+|+++++.... .
T Consensus 118 ~~~~~~-~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~------~ 183 (314)
T PRK06932 118 MGWYRD-QLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS------V 183 (314)
T ss_pred HHHHHH-HHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc------c
Confidence 344444 788999521 12368999 9999999999999999999998 9999877654211 1
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCc
Q 023490 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNI 230 (281)
Q Consensus 160 ~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i 230 (281)
.... ..+++|++++||+|++|+|.++.++ +++ +.++.||||++|| .+.|-.+ ..+++ |.+.+..+
T Consensus 184 ~~~~-----~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~-g~i~gAaL 257 (314)
T PRK06932 184 CREG-----YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALEN-GKIAGAAL 257 (314)
T ss_pred cccc-----cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCccEEEE
Confidence 1111 3489999999999999999998876 887 8999999999998 5677443 34553 45556678
Q ss_pred eEEEeccCCCChhhHHh
Q 023490 231 GVIAVCPKGMGPSVRRL 247 (281)
Q Consensus 231 ~VIrvmPntpg~~vr~~ 247 (281)
||+.-.|..+.+++++.
T Consensus 258 DV~~~EP~~~~~pl~~~ 274 (314)
T PRK06932 258 DVLVKEPPEKDNPLIQA 274 (314)
T ss_pred ecCCCCCCCCCChhhHh
Confidence 99999998888877643
No 15
>PRK07574 formate dehydrogenase; Provisional
Probab=99.65 E-value=7.1e-16 Score=149.72 Aligned_cols=140 Identities=19% Similarity=0.149 Sum_probs=106.7
Q ss_pred hhhcCCCccc---ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCc
Q 023490 93 IVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (281)
Q Consensus 93 ~vr~G~W~f~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~ 169 (281)
.+++|+|... ....+|.| |+|||||+|+||+.+|++|+.+ ||+|+++++... ..+...+.|+.. .
T Consensus 172 ~~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g~~~----~ 239 (385)
T PRK07574 172 QAVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELGLTY----H 239 (385)
T ss_pred HHHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcCcee----c
Confidence 4889999632 22378999 9999999999999999999999 999998887642 223334556552 4
Q ss_pred CCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEeccCCC
Q 023490 170 GDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 170 ~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
.+++|++++||+|++|+|.++.++ +++ +.+..||+|++||. +.|-.+ ..+++ |.+.+..++|+.-.|..+
T Consensus 240 ~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~i~GAaLDV~~~EPlp~ 318 (385)
T PRK07574 240 VSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES-GHLAGYAGDVWFPQPAPA 318 (385)
T ss_pred CCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh-CCccEEEEecCCCCCCCC
Confidence 589999999999999999988875 887 89999999999984 566433 34553 444456678888888766
Q ss_pred ChhhH
Q 023490 241 GPSVR 245 (281)
Q Consensus 241 g~~vr 245 (281)
.++++
T Consensus 319 d~pL~ 323 (385)
T PRK07574 319 DHPWR 323 (385)
T ss_pred CChHH
Confidence 66665
No 16
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.65 E-value=3.3e-16 Score=147.94 Aligned_cols=133 Identities=23% Similarity=0.215 Sum_probs=103.8
Q ss_pred hhhcCCCccc-------ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec
Q 023490 93 IVRGGRDLFK-------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (281)
Q Consensus 93 ~vr~G~W~f~-------~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~ 165 (281)
.+|+|+|... +...+|.| |||||||+|+||+.+|+.++.+ ||+|+++++.... ....
T Consensus 124 ~~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~-------~~~~-- 187 (317)
T PRK06487 124 AVAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP-------ARPD-- 187 (317)
T ss_pred HHHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc-------cccc--
Confidence 3889999632 12368999 9999999999999999999998 9999887765321 1111
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEec
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAVC 236 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrvm 236 (281)
..+++|++++||+|++|+|.++.++ +++ +.++.||+|++|| .+.|-.+ ..+++ |.+.+..+||+.-.
T Consensus 188 ---~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDVf~~E 263 (317)
T PRK06487 188 ---RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS-GHLGGAATDVLSVE 263 (317)
T ss_pred ---ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeecCCCC
Confidence 3489999999999999999998876 887 8999999999998 5666443 34553 55556678999999
Q ss_pred cCCCChhhH
Q 023490 237 PKGMGPSVR 245 (281)
Q Consensus 237 Pntpg~~vr 245 (281)
|..++++++
T Consensus 264 P~~~~~pl~ 272 (317)
T PRK06487 264 PPVNGNPLL 272 (317)
T ss_pred CCCCCCchh
Confidence 987777765
No 17
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.64 E-value=3.9e-16 Score=148.36 Aligned_cols=141 Identities=23% Similarity=0.277 Sum_probs=103.9
Q ss_pred ccchhhhhcCCCccc--------ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH
Q 023490 88 NRDEFIVRGGRDLFK--------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (281)
Q Consensus 88 ~~~e~~vr~G~W~f~--------~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~ 159 (281)
.+++. +|+|+|... ....+|.| |+|||||+|+||+.+|+.|+.+ ||+|+++++.... ....+
T Consensus 121 ~~~~~-~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~ 190 (333)
T PRK13243 121 EADHF-VRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EAEKE 190 (333)
T ss_pred HHHHH-HHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHHH
Confidence 34444 889999631 11268999 9999999999999999999999 9999888776432 22334
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCc
Q 023490 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNI 230 (281)
Q Consensus 160 ~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i 230 (281)
.|+. ..+++|++++||+|++|+|.++.++ +++ +.++.||+|++|+. +.|-.+ ..+++ |.+.+..+
T Consensus 191 ~~~~-----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~-g~i~gAaL 264 (333)
T PRK13243 191 LGAE-----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKE-GWIAGAGL 264 (333)
T ss_pred cCCE-----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHc-CCeEEEEe
Confidence 5554 3589999999999999999988775 776 89999999999985 555332 23443 33334567
Q ss_pred eEEEeccCCCChhhH
Q 023490 231 GVIAVCPKGMGPSVR 245 (281)
Q Consensus 231 ~VIrvmPntpg~~vr 245 (281)
+|+.-.|.. .++++
T Consensus 265 DV~~~EP~~-~~pL~ 278 (333)
T PRK13243 265 DVFEEEPYY-NEELF 278 (333)
T ss_pred ccCCCCCCC-Cchhh
Confidence 888888853 55554
No 18
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.64 E-value=2.2e-15 Score=136.65 Aligned_cols=116 Identities=19% Similarity=0.236 Sum_probs=94.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc----EEEEE-ecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~----~Viig-~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
|+|||||+|+||.+++++|.+. |+ +|+++ +|.. ...+.+.+.|+.. ..+..|+++++|+||+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~-~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v 69 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNP-ARRDVFQSLGVKT----AASNTEVVKSSDVIILAV 69 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCH-HHHHHHHHcCCEE----eCChHHHHhcCCEEEEEE
Confidence 5799999999999999999998 87 77777 5543 3345566678764 457888999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
|++...+++.++.+.++++++| .+++|+++..++. .++.. +++|+|||+|..
T Consensus 70 ~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~ 122 (266)
T PLN02688 70 KPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCL 122 (266)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHH
Confidence 9888888998888888898865 5779999888875 44443 799999999874
No 19
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.64 E-value=2.1e-15 Score=138.84 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=96.4
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCC----cEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhcCcCCEEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G----~~Viig~r~~~~s~-~~A~~~G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
.+ ++|+|||+|+||.+++++|.+. | .+|++++|..++.. ..+.+.|+.. ..++.|+++++|+||
T Consensus 2 ~~-mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVi 70 (279)
T PRK07679 2 SI-QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILF 70 (279)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEE
Confidence 35 7999999999999999999987 6 57888877543222 2334457653 457888999999999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEE-eCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~-aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
+++||+...++++++.+.++++++|+. ++|+.+..+++ .++.+.+|+|.|||+|..
T Consensus 71 lav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~ 127 (279)
T PRK07679 71 LAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAA 127 (279)
T ss_pred EEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHH
Confidence 999999999999988888988887765 69999988886 556667899999997743
No 20
>PLN03139 formate dehydrogenase; Provisional
Probab=99.64 E-value=8.9e-16 Score=149.14 Aligned_cols=146 Identities=15% Similarity=0.081 Sum_probs=109.3
Q ss_pred cccchhhhhcCCCccc---ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCce
Q 023490 87 ANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~ 163 (281)
..+++. +++|+|... ....+|.| |+|||||+|+||+.+|++|+.+ |++|+++++... ..+...+.|+.
T Consensus 174 ~~~~~~-~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~~-~~~~~~~~g~~ 244 (386)
T PLN03139 174 LPGYHQ-VVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLKM-DPELEKETGAK 244 (386)
T ss_pred HHHHHH-HHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCCc-chhhHhhcCce
Confidence 334444 889999631 22378999 9999999999999999999998 999988876532 22334455655
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEE
Q 023490 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIA 234 (281)
Q Consensus 164 ~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIr 234 (281)
. ..+++|++++||+|++|+|.++.++ +++ +.+..||+|++||. +.|-.+ ..+++ |.+.+..+||+.
T Consensus 245 ~----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~l~GAaLDV~~ 319 (386)
T PLN03139 245 F----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS-GHIGGYGGDVWY 319 (386)
T ss_pred e----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc-CCceEEEEcCCC
Confidence 2 3489999999999999999988876 887 89999999999985 566333 34543 444455678888
Q ss_pred eccCCCChhhHH
Q 023490 235 VCPKGMGPSVRR 246 (281)
Q Consensus 235 vmPntpg~~vr~ 246 (281)
-.|..+.++++.
T Consensus 320 ~EPlp~d~pL~~ 331 (386)
T PLN03139 320 PQPAPKDHPWRY 331 (386)
T ss_pred CCCCCCCChhhc
Confidence 888777777654
No 21
>PLN02928 oxidoreductase family protein
Probab=99.62 E-value=8.2e-16 Score=147.05 Aligned_cols=142 Identities=23% Similarity=0.236 Sum_probs=104.3
Q ss_pred hhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC--------Ccee
Q 023490 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTE 164 (281)
Q Consensus 93 ~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~--------G~~~ 164 (281)
.+++|+|....+ .+|.| |+|||||+|+||+.+|+.|+.+ ||+|+++++...... .... .+..
T Consensus 143 ~~~~~~w~~~~~-~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~--~~~~~~~~~~~~~~~~ 212 (347)
T PLN02928 143 SLKARRLGEPIG-DTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEP--EDGLLIPNGDVDDLVD 212 (347)
T ss_pred HHHcCCcccccc-cCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhh--hhhhcccccccccccc
Confidence 388899964333 68999 9999999999999999999999 999988877532111 1110 0000
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEe
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrv 235 (281)
+.....+++|++++||+|++|+|.+..++ +++ +.+..||+|++||. +.|-.+ ..+++ |.+....+||+.-
T Consensus 213 ~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~-g~i~gAaLDV~~~ 291 (347)
T PLN02928 213 EKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES-GHLGGLAIDVAWS 291 (347)
T ss_pred ccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEEccCCC
Confidence 00124589999999999999999988876 887 89999999999984 566443 34443 4444567888888
Q ss_pred ccCCCChhhH
Q 023490 236 CPKGMGPSVR 245 (281)
Q Consensus 236 mPntpg~~vr 245 (281)
.|..+.++++
T Consensus 292 EP~~~~~pL~ 301 (347)
T PLN02928 292 EPFDPDDPIL 301 (347)
T ss_pred CCCCCCChhh
Confidence 8877777665
No 22
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.62 E-value=3.1e-15 Score=138.19 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=91.9
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCC----cEEEEEecCCcccHHH-HHHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAG-FTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G----~~Viig~r~~~~s~~~-A~~~G-~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|++|+|||+|+||.+++++|... | .+|.+++++.....+. ..+.+ ... ..+..++++++|+|++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 57899999999999999999987 6 5777777754322222 22232 221 3477888999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcE-EEEeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaI-Li~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
++|++...++++++.+.++++++ |++++|+.+..+++ .+|. .+|+|+|||+|-
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~ 124 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTS 124 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHH
Confidence 99999888899999888888874 56899999999987 5554 589999999984
No 23
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.61 E-value=1.9e-15 Score=142.71 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=101.0
Q ss_pred hhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH
Q 023490 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (281)
Q Consensus 93 ~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~ 172 (281)
..++|+|.... ..++.| +||||||+|+||+.+|++|+++ ||+|+++++.... . .++.. .....++
T Consensus 120 ~~~~~~w~~~~-~~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-~~~~~~l 184 (312)
T PRK15469 120 LQNSSHWQPLP-EYHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-FAGREEL 184 (312)
T ss_pred HHHhCCcCCCC-CCCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-ecccccH
Confidence 37889997432 367999 9999999999999999999999 9999888765322 1 12111 0113478
Q ss_pred HhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEeccCCCChh
Q 023490 173 YETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
+|++++||+|++|+|.++.++ +++ +.+..||+|++|+ ++.|-.+ ..+++ |.+....++|+.-.|..+.++
T Consensus 185 ~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~-g~i~gaalDVf~~EPl~~~~p 263 (312)
T PRK15469 185 SAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDS-GKVKGAMLDVFSREPLPPESP 263 (312)
T ss_pred HHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhc-CCeeeEEecCCCCCCCCCCCh
Confidence 999999999999999988875 777 7999999999988 4666443 33553 333345667777777665655
Q ss_pred hH
Q 023490 244 VR 245 (281)
Q Consensus 244 vr 245 (281)
++
T Consensus 264 l~ 265 (312)
T PRK15469 264 LW 265 (312)
T ss_pred hh
Confidence 54
No 24
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.60 E-value=4.9e-15 Score=141.52 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=113.0
Q ss_pred hhcccchhhhhcCCCcccc---cccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC
Q 023490 85 SLANRDEFIVRGGRDLFKL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (281)
Q Consensus 85 ~~~~~~e~~vr~G~W~f~~---~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G 161 (281)
|...+.+..+++|+|.+.. ...++.| |||||+|+|+||+.+|++|+.| |+.+.+..|... ..+.+.+.+
T Consensus 134 R~~~~g~~~~~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~~~-~~~~~~~~~ 205 (336)
T KOG0069|consen 134 RRFSEGNEMVRNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRTQL-PPEEAYEYY 205 (336)
T ss_pred hhhhhhhhhhhcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeecccCC-chhhHHHhc
Confidence 4444444559999994322 1478999 9999999999999999999998 976666666543 345555555
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceE
Q 023490 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGV 232 (281)
Q Consensus 162 ~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~V 232 (281)
.. ..+++|.+.+||+|++|||+++.++ +++ +.+.+||+|.+|+ .+.|--+ +.+. .|.+.+.+++|
T Consensus 206 ~~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~-sG~i~~aGlDV 279 (336)
T KOG0069|consen 206 AE-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALK-SGKIAGAGLDV 279 (336)
T ss_pred cc-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHh-cCCcccccccc
Confidence 54 3489999999999999999999886 888 8999999999987 5666443 3344 46667889999
Q ss_pred EEeccCCCChhhHH
Q 023490 233 IAVCPKGMGPSVRR 246 (281)
Q Consensus 233 IrvmPntpg~~vr~ 246 (281)
..-.| .+.++++.
T Consensus 280 f~~EP-~~~~~l~~ 292 (336)
T KOG0069|consen 280 FEPEP-PVDHPLLT 292 (336)
T ss_pred cCCCC-CCCcchhc
Confidence 99999 66666654
No 25
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.58 E-value=3.5e-15 Score=145.59 Aligned_cols=107 Identities=19% Similarity=0.207 Sum_probs=85.2
Q ss_pred hhhcCCCccc-ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC
Q 023490 93 IVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (281)
Q Consensus 93 ~vr~G~W~f~-~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~ 171 (281)
.+++|+|... ....+|.| |||||||+|+||+.+|+.++.+ ||+|+++++.... ...++.. ..+
T Consensus 133 ~~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~~~-----~~~~~~~----~~~ 196 (409)
T PRK11790 133 KAHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIEDKL-----PLGNARQ----VGS 196 (409)
T ss_pred HHHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCccc-----ccCCcee----cCC
Confidence 4889999643 22378999 9999999999999999999999 9999888764211 1122321 348
Q ss_pred HHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcc
Q 023490 172 IYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFL 215 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~ 215 (281)
++|++++||+|++|+|.++.++ +++ +.+..||+|++|+. +.|-.
T Consensus 197 l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~ 243 (409)
T PRK11790 197 LEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTV 243 (409)
T ss_pred HHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcc
Confidence 9999999999999999988876 787 89999999999984 55633
No 26
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.58 E-value=4.5e-15 Score=148.83 Aligned_cols=138 Identities=18% Similarity=0.182 Sum_probs=102.2
Q ss_pred hhhcCCCccc-ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC
Q 023490 93 IVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (281)
Q Consensus 93 ~vr~G~W~f~-~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~ 171 (281)
.+|+|+|... +...+|.| |+|||||+|+||+++|++|+.+ ||+|+++++... .+.+.+.|+.. ..+
T Consensus 120 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~--~~~~~~~g~~~----~~~ 186 (525)
T TIGR01327 120 SLKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYIS--PERAEQLGVEL----VDD 186 (525)
T ss_pred HHHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC--hhHHHhcCCEE----cCC
Confidence 4899999632 12278999 9999999999999999999999 999988876532 33455667652 347
Q ss_pred HHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEeccCCCCh
Q 023490 172 IYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
++|++++||+|++|+|.++.++ +++ +.++.||+|++|+. +.|-.+ ..+++ +.+....+||+.-.| .+.+
T Consensus 187 l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gAaLDVf~~EP-~~~~ 264 (525)
T TIGR01327 187 LDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEE-GHVRAAALDVFEKEP-PTDN 264 (525)
T ss_pred HHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHc-CCeeEEEEecCCCCC-CCCC
Confidence 9999999999999999988775 776 89999999999885 566332 33443 333345667776666 3344
Q ss_pred hhH
Q 023490 243 SVR 245 (281)
Q Consensus 243 ~vr 245 (281)
+++
T Consensus 265 pL~ 267 (525)
T TIGR01327 265 PLF 267 (525)
T ss_pred hhh
Confidence 443
No 27
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.58 E-value=1.9e-14 Score=131.68 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=88.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc----EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~----~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
++|+|||+|+||.++++.|.+. +. ++++.++...+ .++.. ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~~~~-------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPSKKN-------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCChhc-------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999987 52 36555553211 23332 3477888999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
++...+++.++.++++++.+|++++|+++..++. .++....++|+|||+|
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p 116 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTP 116 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCch
Confidence 9999999999988888777888999999999887 5666667999999999
No 28
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.56 E-value=6.9e-15 Score=147.49 Aligned_cols=140 Identities=18% Similarity=0.172 Sum_probs=104.8
Q ss_pred cchhhhhcCCCccc-ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCC
Q 023490 89 RDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (281)
Q Consensus 89 ~~e~~vr~G~W~f~-~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~ 167 (281)
+++. +|+|+|... +...+|.| |+|||||+|+||+.+|++++.+ ||+|+++++... .+.+.+.|+..
T Consensus 119 ~~~~-~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~--~~~~~~~g~~~--- 185 (526)
T PRK13581 119 AHAS-LKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYIS--PERAAQLGVEL--- 185 (526)
T ss_pred HHHH-HHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC--hhHHHhcCCEE---
Confidence 3444 889999632 12268999 9999999999999999999999 999988877532 23445667763
Q ss_pred CcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEeccC
Q 023490 168 TLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 168 t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrvmPn 238 (281)
.+++|++++||+|++|+|.++.++ +++ +.++.||+|++|+. +.|-.+ ..+++ |.+....++|+.-.|.
T Consensus 186 --~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gAaLDVf~~EP~ 262 (526)
T PRK13581 186 --VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKS-GKVAGAALDVFEKEPP 262 (526)
T ss_pred --EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhc-CCeeEEEEecCCCCCC
Confidence 389999999999999999988775 786 89999999999885 555332 33443 4444556777777773
Q ss_pred CCChhhH
Q 023490 239 GMGPSVR 245 (281)
Q Consensus 239 tpg~~vr 245 (281)
+.++++
T Consensus 263 -~~~pL~ 268 (526)
T PRK13581 263 -TDSPLF 268 (526)
T ss_pred -CCchhh
Confidence 455554
No 29
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.56 E-value=9.2e-15 Score=137.76 Aligned_cols=103 Identities=14% Similarity=0.182 Sum_probs=84.1
Q ss_pred hhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH
Q 023490 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (281)
Q Consensus 93 ~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~ 172 (281)
.+++|+|... ...+|.| ++|||||+|+||+++|+.++.+ ||+|+++++.... .++.. ...++
T Consensus 106 ~~~~g~w~~~-~~~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~---~~~~l 167 (303)
T PRK06436 106 NMKNGNFKQS-PTKLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS---IYMEP 167 (303)
T ss_pred HHHcCCCCCC-CCCCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc---ccCCH
Confidence 4889999754 3378999 9999999999999999999988 9999888875321 23321 13489
Q ss_pred HhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCC
Q 023490 173 YETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHG 213 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG 213 (281)
+|++++||+|++|+|.++.++ +++ +.+..||||++|+. +.|
T Consensus 168 ~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG 211 (303)
T PRK06436 168 EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARA 211 (303)
T ss_pred HHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCc
Confidence 999999999999999988876 777 89999999999885 555
No 30
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.55 E-value=3.9e-14 Score=128.60 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=92.0
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCC---cEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G---~~Viig~r~~~~s~~~A~~-~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
|++|+|||+|+||.++++.+... | .+|.+++|..+. .+...+ .|+.. ..+.+++++++|+|++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~~~-~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSPEK-RAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCHHH-HHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 58899999999999999999988 7 577778776433 333333 46643 457788899999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
|+....++++++.+++ +..+|.+++|+....++. .++.+.+++++|||+|-
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~ 121 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPA 121 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchH
Confidence 9999888998888777 344667999999888886 55656789999999873
No 31
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.54 E-value=4.5e-14 Score=126.27 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=101.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC---cE-EEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IV-VKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G---~~-Viig~r~~~-~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++|+|||.|+||.++++.+.+. + .+ +++.+|.+. +..+.+.+.++.. ..+++++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999876 5 23 555665433 2223344456653 457889999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEEee
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~av~ 266 (281)
|++.+.++++++.++++...+|.+++|+.+..++. .++.+..++|+|||++- ++ | .|.+.+. +.
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~-~v------~-----~g~~~~~-~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAA-EI------G-----KSISLYT-MG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHH-HH------h-----cCCeEEe-eC
Confidence 99998889988877776443556899999999987 66666789999999884 33 2 4666654 33
Q ss_pred eCCCcchhhh
Q 023490 267 QVLSEPLFHL 276 (281)
Q Consensus 267 ~d~~g~a~~~ 276 (281)
.+.+....+.
T Consensus 139 ~~~~~~~~~~ 148 (245)
T PRK07634 139 QSVNETHKET 148 (245)
T ss_pred CCCCHHHHHH
Confidence 4444444443
No 32
>PLN02306 hydroxypyruvate reductase
Probab=99.53 E-value=1.8e-14 Score=140.01 Aligned_cols=138 Identities=20% Similarity=0.210 Sum_probs=95.2
Q ss_pred hhhcCCCc-cc---ccccccCCCcEEEEEccCchHHHHHHHHH-hhhhhccCCcEEEEEecCCcccHHH-HHHCCce---
Q 023490 93 IVRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFT--- 163 (281)
Q Consensus 93 ~vr~G~W~-f~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Viig~r~~~~s~~~-A~~~G~~--- 163 (281)
.+|+|+|. +. ....+|.| +||||||+|.||+.+|+.++ .+ ||+|+++++......+. ....|..
T Consensus 144 ~~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~~~~~~l~~ 216 (386)
T PLN02306 144 FMRAGLYEGWLPHLFVGNLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVTAYGQFLKA 216 (386)
T ss_pred HHHcCCCccccccccCCcCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhhhhcccccc
Confidence 38888873 21 11268999 99999999999999999985 77 99998887654211111 0112210
Q ss_pred ----ecC-CCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCC
Q 023490 164 ----EEN-GTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKN 229 (281)
Q Consensus 164 ----~~~-~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~ 229 (281)
... ....+++|++++||+|++|+|.+..++ +++ +.+..||+|++|| .+.|-.+ ..+++ +.+....
T Consensus 217 ~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s-g~i~gAa 295 (386)
T PLN02306 217 NGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA-NPMFRVG 295 (386)
T ss_pred cccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCeeEEE
Confidence 000 012489999999999999999988876 887 8999999999998 5666443 33443 3333455
Q ss_pred ceEEEeccC
Q 023490 230 IGVIAVCPK 238 (281)
Q Consensus 230 i~VIrvmPn 238 (281)
+||+.-.|.
T Consensus 296 LDVf~~EP~ 304 (386)
T PLN02306 296 LDVFEDEPY 304 (386)
T ss_pred EeCCCCCCC
Confidence 677666663
No 33
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.53 E-value=4.4e-14 Score=128.37 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=88.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc---EEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~---~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|+|||||+|+||.+++++|.+. |. ++.+++|..++..+.+.+. ++.. ..+..++++++|+|++++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4799999999999999999987 64 3456666543322333334 3442 4588889999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 188 DAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
++...++++++ .++++++| .+++|+++..++. .++....++|+|||+|..
T Consensus 71 p~~~~~vl~~l--~~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a 121 (258)
T PRK06476 71 PQIAEEVLRAL--RFRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVA 121 (258)
T ss_pred HHHHHHHHHHh--ccCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhh
Confidence 98777888765 25677755 5889999999987 556667899999998765
No 34
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.52 E-value=5.2e-14 Score=133.88 Aligned_cols=129 Identities=15% Similarity=0.222 Sum_probs=95.4
Q ss_pred hhhcCCCccc--ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC
Q 023490 93 IVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (281)
Q Consensus 93 ~vr~G~W~f~--~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~ 170 (281)
.+++|+|.+. ....+|.| ++|||||+|+||+++|+.|+.+ |++|+++++...... . ... ...
T Consensus 127 ~~~~~~~~w~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~----~-~~~----~~~ 190 (330)
T PRK12480 127 RVQAHDFTWQAEIMSKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDL----D-FLT----YKD 190 (330)
T ss_pred HHHhCCcccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhh----h-hhh----ccC
Confidence 3788876542 22368999 9999999999999999999998 999998887642211 1 111 134
Q ss_pred CHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEeccC
Q 023490 171 DIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrvmPn 238 (281)
+++|++++||+|++|+|.+..+ .++. ++++.||+|++|+ .+.|-.+ ..+++ |.+....+||+.-.|.
T Consensus 191 ~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~-g~i~gaalDV~~~EP~ 266 (330)
T PRK12480 191 SVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVND-GTLLGAAIDTYENEAA 266 (330)
T ss_pred CHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHc-CCeeEEEEeccCCCCc
Confidence 7999999999999999998875 4666 8999999999988 5677553 33443 3333456777777773
No 35
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=99.51 E-value=4e-14 Score=135.14 Aligned_cols=140 Identities=21% Similarity=0.214 Sum_probs=110.6
Q ss_pred cccchhhhhcCCCcc-cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec
Q 023490 87 ANRDEFIVRGGRDLF-KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f-~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~ 165 (281)
++....-+|.|+|.. .+.-.||.| ||+||||+|.||.-+|++++.. ||+|+.+++.. ..++++..|+.
T Consensus 122 i~~A~~s~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi~--~~~~~~a~gvq-- 190 (406)
T KOG0068|consen 122 IGQASASMKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPIT--PMALAEAFGVQ-- 190 (406)
T ss_pred cchhheeeecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCCC--chHHHHhccce--
Confidence 334444599999964 333489999 9999999999999999999999 99998887764 35678888887
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcc------hhhhhhcccCCCCCceEEEec
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFL------LGHLQSIGLDFPKNIGVIAVC 236 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~------l~~l~~~~~~~~~~i~VIrvm 236 (281)
+.+++|++..||+|.||||..+.++ +++ +.++.||+|..|+ .+.|-. +..+++ |..-+..++|+.-.
T Consensus 191 ---~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~E 266 (406)
T KOG0068|consen 191 ---LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEE 266 (406)
T ss_pred ---eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCC
Confidence 5799999999999999999988875 777 8999999999887 565532 234553 44546677888877
Q ss_pred cCCCC
Q 023490 237 PKGMG 241 (281)
Q Consensus 237 Pntpg 241 (281)
|+.-+
T Consensus 267 pp~~~ 271 (406)
T KOG0068|consen 267 PPKNG 271 (406)
T ss_pred CCccc
Confidence 76653
No 36
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.50 E-value=1.4e-13 Score=117.59 Aligned_cols=114 Identities=21% Similarity=0.246 Sum_probs=82.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|++|||||+|+||..+|++|.+. |++|.+++|..+ ..+...+.|... ..++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~~-~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSPE-KAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSHH-HHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccchh-hhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 68999999999999999999999 999999987754 345566678775 6799999999999999999976
Q ss_pred HH-HHHHH--HHhcCCCCcEEEEeCCcchhhhhhcccCC-CCCceEEEe
Q 023490 191 QA-DNYEK--IFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAV 235 (281)
Q Consensus 191 ~~-~vl~e--i~~~mKpgaILi~aaG~~l~~l~~~~~~~-~~~i~VIrv 235 (281)
+. +++.+ +++.+++|.++++..-......++....+ ..++.+|..
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeee
Confidence 65 58887 99999999999998877753322111122 345666644
No 37
>PLN02256 arogenate dehydrogenase
Probab=99.50 E-value=2.6e-13 Score=127.83 Aligned_cols=121 Identities=18% Similarity=0.208 Sum_probs=95.9
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l-~~ADVViLa 185 (281)
.-++ ++|+|||+|+||+++|+.+++. |++|+++++.. ..+.+.+.|+.. ..+.++++ .++|+|+++
T Consensus 33 ~~~~-~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVila 99 (304)
T PLN02256 33 KSRK-LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLC 99 (304)
T ss_pred cCCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEe
Confidence 3466 8999999999999999999988 88888777764 235566777763 45777876 479999999
Q ss_pred cCChhHHHHHHHH-HhcCCCCcEEEEeCCcc---hhhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 186 ISDAAQADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 186 vP~~~~~~vl~ei-~~~mKpgaILi~aaG~~---l~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
+|+....++++++ .++++++++|++++.++ +..++. .++.+.+||+.||+. |+++
T Consensus 100 vp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPma-G~e~ 158 (304)
T PLN02256 100 TSILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMF-GPES 158 (304)
T ss_pred cCHHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCC-CCCC
Confidence 9999888899988 68899999999877755 455554 566678999999976 5554
No 38
>PRK07680 late competence protein ComER; Validated
Probab=99.49 E-value=1.6e-13 Score=125.80 Aligned_cols=115 Identities=19% Similarity=0.257 Sum_probs=89.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc----EEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~----~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++|+|||+|+||.+++++|.+. |. +|.+++|..++......+. |+.. ..+..++++++|+|++++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 4799999999999999999988 73 6777777643322223333 5543 457888899999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
|+....++++++.++++++++|+ +++|+.+..++. .++ ..++|+|||+|.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~ 121 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITN 121 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHH
Confidence 99988889999989998888664 678899888886 444 369999999874
No 39
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.48 E-value=4.3e-13 Score=128.23 Aligned_cols=124 Identities=18% Similarity=0.155 Sum_probs=92.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|+|||+|+||+++|+.|++. |++|.++++..... ...+...|+.. ....++++++++||+||+++|+..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVID--ELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCCc--ccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999999 98887777654321 12223344432 223467889999999999999988
Q ss_pred HHHHHHHHHh-cCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 191 ~~~vl~ei~~-~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
..++++++.+ .++++++|+++++++...++.....++....||..|| ++|++.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e~ 126 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSHK 126 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCch
Confidence 8889998887 4899999999999986543321123455678999998 777654
No 40
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.47 E-value=3.2e-13 Score=126.26 Aligned_cols=123 Identities=19% Similarity=0.315 Sum_probs=98.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC-CcccHHHHHHCCceecCCCcCCH-HhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~-~~~s~~~A~~~G~~~~~~t~~~~-~E~l~~ADVViLavP~~ 189 (281)
++|+|||+|.||+++|+.|+.. |+.+.++.+. .....+.+.+.|+..+ ...+. .+.+.++|+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d~--~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVIDE--LTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCcccc--cccchhhhhcccCCEEEEeccHH
Confidence 8999999999999999999999 9988555444 3445566777888742 12233 67888999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChh
Q 023490 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
...++++++.+++|+|++|++.++++-..++......|++..||..|| +-||+
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HP-M~G~~ 128 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP-MFGPE 128 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCC-CCCCc
Confidence 999999999999999999999999995443332225566558999999 88885
No 41
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.47 E-value=1.7e-13 Score=106.10 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=72.4
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCC---cEEEEE-ecCCcccHHHHHHCCceecCCCcC-CHHhhcCcCCEEEEccC
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLIS 187 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G---~~Viig-~r~~~~s~~~A~~~G~~~~~~t~~-~~~E~l~~ADVViLavP 187 (281)
||||||.|+||.++++++... | .+|.+. .|+.++..+.+.+.++.. .. +..|+++++|+|+|++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA----TADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE----ESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc----ccCChHHhhccCCEEEEEEC
Confidence 799999999999999999999 8 788856 676655556667777653 33 78999999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEE-EeCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILG-LSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi-~aaG 213 (281)
|+...+++.++ +...++++|+ +++|
T Consensus 71 p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999988 7777888765 5554
No 42
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.46 E-value=2.9e-13 Score=124.81 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=90.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|+|||+|+||+++|+.|++. |++|.++++.. +..+.+.+.|.... ..+..+.++++|+|++++|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~~~-~~~~~a~~~g~~~~---~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSRRE-STCERAIERGLVDE---ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEECCH-HHHHHHHHCCCccc---ccCCHhHhcCCCEEEEcCCHHHH
Confidence 5899999999999999999998 99988887653 34566667775421 22333578999999999999988
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChh
Q 023490 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 192 ~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
.++++++.+.++++++|+++++++...++. ..+....||+.|| +.|++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~---~~~~~~~~v~~HP-m~G~~ 118 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEA---WEKLHPRFVGSHP-MAGTA 118 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHH---HHHhhCCceeeCC-cCCCC
Confidence 889999999999999999999998765553 1111125899999 44443
No 43
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.44 E-value=2.3e-13 Score=129.27 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=93.0
Q ss_pred hhcCCCcccc--cccccCCCcEEEEEccCchHHHHHHHH-HhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC
Q 023490 94 VRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (281)
Q Consensus 94 vr~G~W~f~~--~~~~l~G~ktIGIIG~G~mG~AiA~~L-ra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~ 170 (281)
+++|.|.+.. ...+|.| ++|||||+|+||+++|+.| +.+ |++|+++++..... ...++.. ..
T Consensus 128 ~~~~~~~~~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~~~----~~ 192 (332)
T PRK08605 128 VREHDFRWEPPILSRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYVDY----KD 192 (332)
T ss_pred HHhCCcccccccccceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhccc----cC
Confidence 7788775422 2368999 9999999999999999999 556 99988777653221 1122221 34
Q ss_pred CHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEecc
Q 023490 171 DIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrvmP 237 (281)
+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+. +.|..+ ..+++ |.+....++|+...|
T Consensus 193 ~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~-g~i~gaalDV~~~Ep 267 (332)
T PRK08605 193 TIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDN-GLIKGAALDTYEFER 267 (332)
T ss_pred CHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCeeEEEEecccCCC
Confidence 89999999999999999988876 555 78999999999885 566443 23443 333345567887776
No 44
>PLN02712 arogenate dehydrogenase
Probab=99.41 E-value=1.8e-12 Score=133.61 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=95.9
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEE
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~-~ADVVi 183 (281)
..++.+ ++|||||+|+||+++|++|++. |++|+++++... .+.+.+.|+.. ..+.+|+++ ++|+|+
T Consensus 364 ~~~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~~--~~~a~~~Gv~~----~~~~~el~~~~aDvVI 430 (667)
T PLN02712 364 VNDGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSDY--SDEAQKLGVSY----FSDADDLCEEHPEVIL 430 (667)
T ss_pred cCCCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECChH--HHHHHHcCCeE----eCCHHHHHhcCCCEEE
Confidence 356788 9999999999999999999998 999888877632 24566778753 457888775 599999
Q ss_pred EccCChhHHHHHHHHHh-cCCCCcEEEEeCCcc---hhhhhhcccCCCCCceEEEeccCCC
Q 023490 184 LLISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~-~mKpgaILi~aaG~~---l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
+|+|+....++++++.. .|++|++|+++++++ +..++. .++.+.+||+.||+..
T Consensus 431 LavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G 488 (667)
T PLN02712 431 LCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFG 488 (667)
T ss_pred ECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCC
Confidence 99999888888987765 799999999887764 344544 5677889999999655
No 45
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.39 E-value=2.9e-12 Score=126.07 Aligned_cols=119 Identities=19% Similarity=0.265 Sum_probs=95.8
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|+|+||| +|.||.++|+.|+.. |++|.++++......+.+.+.|+.. ..+.+++++++|+|++++|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999998 9999888876544345566777753 4577889999999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCcch---hhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 191 QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~aaG~~l---~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
..++++++.+.++++++|+++++++. ..++. .++.+..||+.|| +.|++.
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HP-maGp~~ 123 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHP-MFGPRT 123 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCC-CCCCCC
Confidence 88899999999999999998887653 44544 4566789999998 545443
No 46
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.39 E-value=5.8e-13 Score=129.28 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=88.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+|.| +||||||+|+||+.+|+.|+++ ||+|+++++.... ...... ..+++|++++||+|++|
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~~-----~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEGD-----FRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccccc-----cCCHHHHHhhCCEEEEe
Confidence 47999 9999999999999999999999 9999888753211 111111 45899999999999999
Q ss_pred cCChhH----H-HHHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 186 ISDAAQ----A-DNYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 186 vP~~~~----~-~vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
+|.+.. + ++++ +.+..||+|++||. +.|-.+ ..+++ +.....-++|..-.|. +..++
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~-g~~~ga~LDV~e~EP~-~~~~L 244 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNE-GQKLSVVLDVWEGEPE-LNVEL 244 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh-CCCcEEEEecCCCCCC-Cchhh
Confidence 999773 4 5887 89999999999984 566332 33443 3333456777777884 44443
No 47
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.37 E-value=2.7e-12 Score=120.60 Aligned_cols=95 Identities=24% Similarity=0.230 Sum_probs=84.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|+|||+|+||..+|++|.+. |++|.+++|..++..+.+++.|... ..++.|+++++|+||+++|+.++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999999777677777888875 56889999999999999999887
Q ss_pred HH-HHH---HHHhcCCCCcEEEEeCCcch
Q 023490 192 AD-NYE---KIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 192 ~~-vl~---ei~~~mKpgaILi~aaG~~l 216 (281)
.+ ++. .+++.+|||+++|+++-+..
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp 99 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISP 99 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCH
Confidence 65 663 69999999999999987774
No 48
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.36 E-value=4.7e-12 Score=116.27 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=84.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
++|+|||+|+||+++|++|+.. |+ +|.++++. ....+.+.+.|+... ..+.+++. ++|+||+++|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~~~d~~-~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVYGYDHN-ELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEEEEcCC-HHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 4899999999999999999988 75 66666654 334556667776521 34666765 599999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCC
Q 023490 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKG 239 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPnt 239 (281)
...+++.++.+ ++++++|++++..+....+..... ....||+.||+.
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPma 116 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMA 116 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcC
Confidence 99899999988 999999998777664333221011 124799999985
No 49
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.35 E-value=7.3e-12 Score=129.11 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=91.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC--cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G--~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
++|+|||+|+||.++++.++.. | .+|+++++..+ ..+.+.+.|+.. ....+.+++++++|+|++++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~~~~-~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDRRAK-SLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEECChh-HHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 7 47777776643 355667777641 12346788899999999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCcc---hhhhhhcccCCCCCceEEEeccCCC
Q 023490 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aaG~~---l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
...++++++.++++++.+|+++++++ +..++. .++. ..+|+|||+|
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~--~~~r~~~~hP 123 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGE--LPAGFVPGHP 123 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccc--cCCeEEecCC
Confidence 87889999999999999999999988 556654 4443 3578999999
No 50
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.35 E-value=5.6e-12 Score=122.11 Aligned_cols=113 Identities=14% Similarity=0.124 Sum_probs=89.2
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|+|||+ |.||+++|+.|++.. +++|+.+++.+ .+ ..++++.+++||+|+||+|...
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~-----~~~V~g~D~~d---------~~-------~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRM-----QLEVIGHDPAD---------PG-------SLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-----CCEEEEEcCCc---------cc-------cCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 999999999999741 77876555421 11 2367889999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhh
Q 023490 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (281)
Q Consensus 191 ~~~vl~ei~~~---mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~ 249 (281)
..++++++.++ ++++++|+|+++++-.-++. ..+...+||..|| +-|++...+|+
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HP-MaG~E~s~lf~ 121 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHP-MTAPPKSPTLK 121 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCC-CCCCCCCcccC
Confidence 99999988775 89999999999999654443 1233457999999 88887765553
No 51
>PLN02712 arogenate dehydrogenase
Probab=99.34 E-value=7.3e-12 Score=129.23 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=94.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l-~~ADVViLavP~~~ 190 (281)
++|||||+|+||+++|+.|++. |++|.++++... .+.+.+.|+.. ..+.++++ +++|+|+||+|+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~~--~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSDH--SLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCHH--HHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 8999999999999999999998 999888777632 35677788764 45777855 57999999999988
Q ss_pred HHHHHHHHH-hcCCCCcEEEEeCCcchh---hhhhcccCCCCCceEEEeccCCCChhh
Q 023490 191 QADNYEKIF-SCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 191 ~~~vl~ei~-~~mKpgaILi~aaG~~l~---~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
..++++++. +.++++++|+++..++.. .++. .+|.+.+||..||.- |++.
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~---~l~~~~~~v~~HPMa-G~e~ 174 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLD---YLPEDFDIICSHPMF-GPQS 174 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHH---hcCCCCeEEeeCCcC-CCcc
Confidence 888998775 789999999999888843 3443 557778999999954 7774
No 52
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.34 E-value=1.5e-11 Score=114.66 Aligned_cols=118 Identities=21% Similarity=0.324 Sum_probs=90.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
++|+|||+|+||.++|+.|+.. |+ +|.++++.. ...+.+++.|+.. ....+.+++++++|+|++++|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr~~-~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADRSA-ETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEECCH-HHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 8999999999999999999988 74 777777764 3456666777531 12346778899999999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccC
Q 023490 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPn 238 (281)
....+++++.+.++++.+|+++++++...++.....++.++.++..+|-
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm 126 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPL 126 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCC
Confidence 8777888888999999999999888854443211134556678888883
No 53
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.34 E-value=1.4e-12 Score=126.72 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=89.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.++.| |||||||+|+||+.+|+.++++ |++|+++++.... .+.+.. +.+++|++++||+|++|
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~~~~~~-----~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----AEGDGD-----FVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccCcc-----ccCHHHHHhhCCEEEEe
Confidence 57999 9999999999999999999999 9999888764221 111122 45899999999999999
Q ss_pred cCChh-----HHHHHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEeccCCCChhhH
Q 023490 186 ISDAA-----QADNYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (281)
Q Consensus 186 vP~~~-----~~~vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrvmPntpg~~vr 245 (281)
+|.+. ..++++ +.+..||+|++||. +.|-.+ ..+++ +.+....++|..-.|. +.++++
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~-g~i~~a~LDV~e~EP~-~~~~L~ 245 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS-GEDLDAVLDVWEGEPQ-IDLELA 245 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEeCCCCCCC-CChhhh
Confidence 99976 335887 89999999999985 566333 23332 3333456777777774 444443
No 54
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.31 E-value=1.5e-11 Score=113.24 Aligned_cols=122 Identities=20% Similarity=0.185 Sum_probs=90.3
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH----------HHHHHCCceec--------C-CCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----------AEARAAGFTEE--------N-GTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~----------~~A~~~G~~~~--------~-~t~~~ 171 (281)
|++|+|||.|.||.++|..+... |++|+++++..+... +...+.|.... . ....+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 57899999999999999999998 999988876643221 12223331100 0 00234
Q ss_pred HHhhcCcCCEEEEccCChhH--HHHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~--~~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
.+ .+++||+|++++|++.. .+++.++.++++++++| +.++|+.+..+.. .++....++++||+.|.+
T Consensus 77 ~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~ 146 (282)
T PRK05808 77 LD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVP 146 (282)
T ss_pred HH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcc
Confidence 44 58999999999998766 45888999999999988 6889999988876 444445799999999865
No 55
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.31 E-value=1.9e-11 Score=109.01 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=98.3
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEEE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-------~G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
|+|+||| .|+||.++++.|.+. |++|.+++|..++..+.+.+ .|+... -...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~-~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDIK-VTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCce-EEEeChHHHHhcCCEEE
Confidence 5899997 999999999999998 99998888765433222221 122100 01236678899999999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEE-EeCCcch-----------------hhhhhcccCCCCCceEEEeccCCCChhhH
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-----------------GHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi-~aaG~~l-----------------~~l~~~~~~~~~~i~VIrvmPntpg~~vr 245 (281)
+++|++...++++++.+.++. ++|+ ++.|+.. +.+++ .+|.+.+||++|||++-.-..
T Consensus 74 lavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 999999998888887776754 6554 6788775 23444 456546899999999876554
Q ss_pred HhhhhCccccCCCceeEEEeeeCCCcchhhhh
Q 023490 246 RLYVQGKEINGAGINSSFAVHQVLSEPLFHLC 277 (281)
Q Consensus 246 ~~y~~g~~~~~~g~~~~~av~~d~~g~a~~~~ 277 (281)
.. .++.+. ..| |--|.++ |++.+
T Consensus 150 ~~------~~~~~~-~~~-v~Gdd~~-ak~~v 172 (219)
T TIGR01915 150 DV------DDEVDC-DVL-VCGDDEE-AKEVV 172 (219)
T ss_pred CC------CCCCCC-CEE-EECCCHH-HHHHH
Confidence 31 122332 233 5566555 66543
No 56
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.29 E-value=2.8e-11 Score=112.50 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=89.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-----CCceecC----------CCcCCHHhh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-----~G~~~~~----------~t~~~~~E~ 175 (281)
+++|+|||.|.||.++|..|... |++|+++++..+ ..+.+.+ .|...+. ....+.+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVMEG-ALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 58999999999999999999988 999988877543 2222221 1210000 013467788
Q ss_pred cCcCCEEEEccCChhH--HHHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 176 ISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 176 l~~ADVViLavP~~~~--~~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
++++|+|++++|+... ..++.++.+.++++++| +.+.|+.+..+.+ .++....|+++||++|..
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~ 143 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPAD 143 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCc
Confidence 9999999999999753 34778887888888876 5788988888776 444456799999998853
No 57
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.26 E-value=4.9e-11 Score=110.42 Aligned_cols=122 Identities=18% Similarity=0.213 Sum_probs=87.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCCceec--------CCCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE--------NGTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G~~~~--------~~t~~~ 171 (281)
+++|+|||.|.||.++|+.+... |++|+++++..+. .+. ..+.|...+ .-...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 58999999999999999999998 9999988876432 221 122221000 001223
Q ss_pred HHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
..+.+++||+||+++|...+. .++.++.+.++++++|+ .++|+.+..+++ .+.....++++||..|..
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~ 147 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPP 147 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCcc
Confidence 346789999999999965553 47778888999999875 899999888776 333445788888776654
No 58
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.22 E-value=8.9e-11 Score=109.44 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=76.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc---CCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~---ADVViLavP~ 188 (281)
++|||||+|+||.++|++|.+. |++|.+++|..+ ..+...+.|... ..+.+|++++ +|+|++++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQE-AVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 4799999999999999999998 999998887754 334455677664 4588888876 6999999999
Q ss_pred hhH-HHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 189 AAQ-ADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 189 ~~~-~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
..+ ..+++++.+.+++|++|++.+....
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~ 98 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRY 98 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCc
Confidence 854 5688899999999999998866553
No 59
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.20 E-value=3.5e-11 Score=111.29 Aligned_cols=116 Identities=23% Similarity=0.291 Sum_probs=93.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc----EEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~----~Viig~r~~~~s~~~-A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
+++||||.|+|.+++++++... |. +++.+.. ..++... .+..|+.. ..+..++++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 4789999999999999999988 76 4444443 3344444 66778764 445689999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
+|.....++.++.+..+.+.+| ++++|+.+..+++ .++.+.+|||+|||+|.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~ 122 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPS 122 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChh
Confidence 9999999999888777777765 5999999999987 66677899999999995
No 60
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.19 E-value=4.9e-11 Score=118.80 Aligned_cols=124 Identities=19% Similarity=0.231 Sum_probs=94.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
..|.| ++++|||+|.||+.+|+.++.+ |++|+++++.+.+ ...+...|+. ..+++++++++|+|++|
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 47899 9999999999999999999999 9999888776443 2345556776 35789999999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeCCcch----hhhhhcccCCCCCceEEEeccCCCChhh---HHhhhh
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLL----GHLQSIGLDFPKNIGVIAVCPKGMGPSV---RRLYVQ 250 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l----~~l~~~~~~~~~~i~VIrvmPntpg~~v---r~~y~~ 250 (281)
+. ..++++ +.+..||||++|+.++-+.. ..++. ..++++..+.|+.....+ |++|+=
T Consensus 317 tG---t~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~-----~~~vdv~evep~v~~~~~~~g~~i~ll 381 (476)
T PTZ00075 317 TG---NKDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEA-----YPGIEIVEIKPQVDRYTFPDGKGIILL 381 (476)
T ss_pred CC---cccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHh-----cCCceeecccCCCCeEEeCCCCEEEEE
Confidence 74 345786 89999999999987655442 22222 236788889898877666 456653
No 61
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.18 E-value=2.1e-10 Score=114.36 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=89.0
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH------------------HCC-ceecCCCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~------------------~~G-~~~~~~t~~~ 171 (281)
+++|||||.|+||.++|.++... |++|.++++..+....... ..| +.. ..+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~~ 73 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF----CAS 73 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe----eCC
Confidence 47999999999999999999999 9999999887543211100 012 222 457
Q ss_pred HHhhcCcCCEEEEccCChhH-HH-HHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 172 IYETISGSDLVLLLISDAAQ-AD-NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~-~~-vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
+++++++||+|+.++|+... .+ ++.++.+.++++++|. .+.|+.+..+.+ .+...-.++..||+.|..
T Consensus 74 ~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~ 144 (495)
T PRK07531 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVY 144 (495)
T ss_pred HHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCcc
Confidence 88999999999999999864 33 6778888888888663 568888877775 344445799999988753
No 62
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.17 E-value=2.1e-10 Score=106.07 Aligned_cols=95 Identities=23% Similarity=0.303 Sum_probs=74.6
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC--------------ceecCCCcCCHHhhc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETI 176 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G--------------~~~~~~t~~~~~E~l 176 (281)
|++|+|||+|+||.++|..|.+. |++|.++++.... .+...+.+ ... ..+.++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDPEQ-AAEINADRENPRYLPGIKLPDNLRA----TTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHcCcccccCCCCcCCCCeEE----eCCHHHHH
Confidence 57999999999999999999998 9999888876432 33333332 221 34777889
Q ss_pred CcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEE-eCCcch
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLL 216 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~-aaG~~l 216 (281)
+++|+|++++|+.....+++++.+.++++++|+. ..|+..
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 9999999999998777788899999999998764 448775
No 63
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.16 E-value=2.4e-10 Score=105.40 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=76.6
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
+++|||||+|.||.++|+++.+. |++|.++++... ..+...+.|... ..+.+|+++++|+|++++|+..
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~~~-~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRNPE-AVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSP 70 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHH
Confidence 37899999999999999999998 999988877643 344455666653 4578899999999999999877
Q ss_pred HHH-HH---HHHHhcCCCCcEEEEeCCcch
Q 023490 191 QAD-NY---EKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 191 ~~~-vl---~ei~~~mKpgaILi~aaG~~l 216 (281)
..+ ++ +++.+.++++++|++.+.+..
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~~ 100 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIAP 100 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCCH
Confidence 654 55 357889999999998877665
No 64
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.16 E-value=3e-10 Score=105.87 Aligned_cols=116 Identities=18% Similarity=0.181 Sum_probs=85.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc---CCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~---ADVViLavP~ 188 (281)
++|||||+|+||.++|++|.+. |++|.++++..++ .+...+.|... ..+.+|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~~-~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPEA-VEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHHH-HHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 4899999999999999999998 9999998887543 44456677764 4578888875 6999999999
Q ss_pred hhH-HHHHHHHHhcCCCCcEEEEeCCcchh---hhhhcccCCCCCceEEEeccCCCC
Q 023490 189 AAQ-ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 189 ~~~-~~vl~ei~~~mKpgaILi~aaG~~l~---~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
... ..+++.+.+.++++.++++.+..... .+.. ..-..++.++. +|..-|
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~ 123 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGG 123 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcC
Confidence 844 56888889999999999887554431 1211 11134667775 675444
No 65
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.14 E-value=3e-10 Score=105.91 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=76.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|++|||||+|+||.++|++|.+. |++|.++++..++ .+...+.|... ..+..|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~~~-~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNPQA-VDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 47899999999999999999998 9999988887543 44555566653 4588899999999999999987
Q ss_pred HH-HHHH---HHHhcCCCCcEEEEeCCcch
Q 023490 191 QA-DNYE---KIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 191 ~~-~vl~---ei~~~mKpgaILi~aaG~~l 216 (281)
+. .++. .+++.++++.++++.+-+..
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p 99 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHP 99 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCH
Confidence 54 4653 47888999999988766654
No 66
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.14 E-value=2.3e-10 Score=110.48 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=82.8
Q ss_pred CCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 110 G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
.+++|+||| +|.||+++|+.|++. |++|.++++... .+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~~------------------~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDDW------------------DRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCcc------------------hhHHHHHhcCCEEEEeCcH
Confidence 458999999 999999999999999 999988876421 1456788999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCcchh---hhhhcccCCCCCceEEEeccCCCChh
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~~l~---~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
....++++++.+ +++|++|+++++++-. .+.. ..+ .+||..|| +-|++
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~---~~~--~~fvg~HP-m~G~~ 203 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLA---AHS--GPVLGLHP-MFGPD 203 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHH---hCC--CCEEeeCC-CCCCC
Confidence 988889998888 9999999999887643 3332 222 26999999 55553
No 67
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.14 E-value=1.2e-10 Score=97.50 Aligned_cols=113 Identities=27% Similarity=0.316 Sum_probs=71.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
.+|+|||.|+.|.++++.|... |++|.-...+...+.+.+.+ .+-. ...+++|+++++|+|+|++||..
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~~~~~----~~~~~~~~~~~aDlv~iavpDda 80 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAFIGAG----AILDLEEILRDADLVFIAVPDDA 80 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC--TT---------TTGGGCC-SEEEE-S-CCH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccccccc----cccccccccccCCEEEEEechHH
Confidence 7999999999999999999999 99875443332333344432 2222 24578899999999999999999
Q ss_pred HHHHHHHHHhc--CCCCcEEEEeCCcc-hhhhhhcccCCCCCceEEEecc
Q 023490 191 QADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 191 ~~~vl~ei~~~--mKpgaILi~aaG~~-l~~l~~~~~~~~~~i~VIrvmP 237 (281)
+..+.+++... .++|++|+-.+|-. .+.++. .-..+-.+..+||
T Consensus 81 I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 99999998887 89999999877733 444442 1123445556655
No 68
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.13 E-value=3.6e-10 Score=105.40 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=74.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh---hcCcCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---TISGSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E---~l~~ADVViLavP~ 188 (281)
|+|||||+|+||.++|++|.+. |++|.+++|..+ ..+...+.|... ..+.++ .++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQD-AVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 5899999999999999999999 999988887754 344555666553 334544 45678999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
.....+++++.+.+++|.+|++.+...
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 966679999999999999999876643
No 69
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.13 E-value=3.3e-10 Score=105.87 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=85.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
|+|||||+|+||.++|++|.+. |++|.++++... .+...+.|... ..+..|+++++|+|++++|+.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~~--~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGPV--ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCHh--HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999999 999988887642 34455667653 56888999999999999999865
Q ss_pred H-HHHH---HHHhcCCCCcEEEEeCCcchhhhhhcc-cCCCCCceEEEeccCCCCh
Q 023490 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGHLQSIG-LDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 192 ~-~vl~---ei~~~mKpgaILi~aaG~~l~~l~~~~-~~~~~~i~VIrvmPntpg~ 242 (281)
. +++. .+.+.+++|++|++++.+.....++.. ..-..+..++. +| ..|.
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd-aP-VsGg 122 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD-AP-VSGG 122 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE-ec-CCCC
Confidence 4 4663 367788999999999887764222100 11134667777 57 3443
No 70
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.12 E-value=3.3e-10 Score=102.31 Aligned_cols=92 Identities=24% Similarity=0.267 Sum_probs=76.8
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-HHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
||+++|||.|+||.++|+++.+. |++|+|+.++.+++.+.+ .+.+...+ ..+++++++.+|+|+|++|..
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i~---~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLIT---GGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhccccc---cCChHHHHhcCCEEEEeccHH
Confidence 68999999999999999999999 999999988876555433 33443321 468999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeC
Q 023490 190 AQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aa 212 (281)
....++.++...+. |+||++..
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~t 93 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDAT 93 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecC
Confidence 99999999998887 88988654
No 71
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.12 E-value=3.6e-10 Score=104.36 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=75.1
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHH
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~ 192 (281)
+|||||+|+||.++|++|.+. |++|.++++..+ ..+.+.+.|... ..+.++++++||+|++++|+....
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIGPE-VADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 589999999999999999999 999998887753 345556667653 457889999999999999997665
Q ss_pred H-HH---HHHHhcCCCCcEEEEeCCcch
Q 023490 193 D-NY---EKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 193 ~-vl---~ei~~~mKpgaILi~aaG~~l 216 (281)
+ ++ +.+.+.++++++|++.+.+..
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~ 97 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISP 97 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCH
Confidence 4 54 247788999999998776664
No 72
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.10 E-value=6.6e-10 Score=104.02 Aligned_cols=112 Identities=17% Similarity=0.241 Sum_probs=80.6
Q ss_pred ccchhhhhcCCCcccc--cccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec
Q 023490 88 NRDEFIVRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (281)
Q Consensus 88 ~~~e~~vr~G~W~f~~--~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~ 165 (281)
.|....+-++.|...+ ...++.| ++++|||+|.||+++|+.|+.+ |++|.+++|...+ .+.+.+.|....
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~-~~~~~~~g~~~~ 198 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSAD-LARITEMGLIPF 198 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHCCCeee
Confidence 3444444444443211 1257899 9999999999999999999999 9999999887532 334455565421
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCC
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHG 213 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG 213 (281)
...++++.++++|+|++++|.. +++ +.++.|+++++|++.+.
T Consensus 199 --~~~~l~~~l~~aDiVint~P~~----ii~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 199 --PLNKLEEKVAEIDIVINTIPAL----VLTADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred --cHHHHHHHhccCCEEEECCChH----HhCHHHHhcCCCCeEEEEeCc
Confidence 1335678899999999999975 343 67888999999987643
No 73
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.10 E-value=1.2e-09 Score=101.12 Aligned_cols=122 Identities=18% Similarity=0.279 Sum_probs=87.8
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH--------------HCCceecC---------C
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------------AAGFTEEN---------G 167 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~--------------~~G~~~~~---------~ 167 (281)
+++|+|||.|.||.++|..+... |++|+++++..+. .+.+. +.|...+. .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~~~-l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSEEI-LKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 47999999999999999999998 9999988876432 22211 11210000 0
Q ss_pred CcCCHHhhcCcCCEEEEccCChhH--HHHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCChh
Q 023490 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 168 t~~~~~E~l~~ADVViLavP~~~~--~~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
...+. +.++++|+|++++|++.. ..++.++.+.++++++|+ ..+|+.+..+.. .++....++.+||+.|.+-
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~ 150 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPV 150 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc
Confidence 12234 678999999999999764 347788888899999865 678888887775 4444557999999987653
No 74
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.07 E-value=6.1e-10 Score=111.58 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=76.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhcCc---CCEEEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~---~G~~~~~~t~~~~~E~l~~---ADVViL 184 (281)
+.+|||||+|+||.+||++|.+. |++|.+++|..++..+...+ .|... -....+++|+++. +|+|++
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 47899999999999999999999 99999999986543332221 14320 0014578888876 999999
Q ss_pred ccCChhHHH-HHHHHHhcCCCCcEEEEeCCcch
Q 023490 185 LISDAAQAD-NYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 185 avP~~~~~~-vl~ei~~~mKpgaILi~aaG~~l 216 (281)
++|+.+..+ +++.+++.+++|.+||+.+-...
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~ 111 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWY 111 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 999987765 88899999999999999876653
No 75
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.04 E-value=9.7e-10 Score=101.73 Aligned_cols=91 Identities=25% Similarity=0.228 Sum_probs=75.3
Q ss_pred EEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH-HHH
Q 023490 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADN 194 (281)
Q Consensus 116 IIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~-~~v 194 (281)
|||+|+||.++|++|.+. |++|.+++|..+ ..+...+.|... ..+..++++++|+|++++|+..+ ..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFPD-AVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 999999988754 345556667653 45888999999999999999665 457
Q ss_pred H---HHHHhcCCCCcEEEEeCCcchh
Q 023490 195 Y---EKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 195 l---~ei~~~mKpgaILi~aaG~~l~ 217 (281)
+ +.+.+.++++++|++.+++...
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~ 95 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPD 95 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHH
Confidence 6 5788899999999998888864
No 76
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.03 E-value=8.5e-10 Score=100.49 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=74.4
Q ss_pred cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcE-EEEeCCcchhhh
Q 023490 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHL 219 (281)
Q Consensus 141 ~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaI-Li~aaG~~l~~l 219 (281)
.+|++++|..++..+.+.+.|+.. ..+..++++++|+|||++||+...+++.++.+.+.++++ |++++|+.+..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 468888886544334445667654 457889999999999999999988999988887776665 569999999999
Q ss_pred hhcccCCCCCceEEEeccCCCC
Q 023490 220 QSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 220 ~~~~~~~~~~i~VIrvmPntpg 241 (281)
+. .++.+.+++|+|||+|-
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~ 104 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPA 104 (245)
T ss_pred HH---HcCCCCeEEEECCChHH
Confidence 87 66766789999999863
No 77
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.03 E-value=3.2e-09 Score=98.17 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=76.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-----------CC-------------ceecC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AG-------------FTEEN 166 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-----------~G-------------~~~~~ 166 (281)
+++|+|||.|.||.++|..+... |++|+++++..+. .+.+.+ .| +..
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-- 71 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQEQ-LESAQQEIASIFEQGVARGKLTEAARQAALARLSY-- 71 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE--
Confidence 57999999999999999999998 9999988876432 222211 11 111
Q ss_pred CCcCCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEE-EEeCCcchhhhhh
Q 023490 167 GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQS 221 (281)
Q Consensus 167 ~t~~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~ 221 (281)
..+.++++++||+|++++|..... .++.++.+.++++++| +..+.+.+..+.+
T Consensus 72 --~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~ 127 (288)
T PRK09260 72 --SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS 127 (288)
T ss_pred --eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 346788999999999999997754 3677888899999977 5677777766654
No 78
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.02 E-value=1.4e-09 Score=108.41 Aligned_cols=97 Identities=15% Similarity=0.199 Sum_probs=74.5
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhcC---cCCEEEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~---~G~~~~~~t~~~~~E~l~---~ADVViL 184 (281)
|.+|||||+|+||.++|++|.+. |++|.+++|..++..+.... .|... ....+++|+++ ++|+|++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999999875543222221 24221 12458888886 5899999
Q ss_pred ccCChhHH-HHHHHHHhcCCCCcEEEEeCCcc
Q 023490 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 185 avP~~~~~-~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
++|+.... .+++++.+++++|.+|++.+...
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 98887665 58899999999999999876543
No 79
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.99 E-value=6.7e-09 Score=96.12 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=80.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC------------CceecC---------CCc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------GFTEEN---------GTL 169 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~------------G~~~~~---------~t~ 169 (281)
+++|+|||.|.||.++|..+... |++|+++++..+ ..+.+.+. ....++ ...
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT 75 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe
Confidence 48999999999999999999988 999998887643 22222111 111000 013
Q ss_pred CCHHhhcCcCCEEEEccCChhH--HHHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 170 GDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 170 ~~~~E~l~~ADVViLavP~~~~--~~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
.+.++++++||+||.++|.... ..+++++.+.++++++|. ..+++.+..+.+ .++....++..||--|
T Consensus 76 ~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p 146 (287)
T PRK08293 76 TDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANE 146 (287)
T ss_pred CCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCC
Confidence 5788899999999999997643 347888889999999884 556566655554 2222234555555333
No 80
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.97 E-value=7.1e-09 Score=95.91 Aligned_cols=103 Identities=24% Similarity=0.341 Sum_probs=74.5
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-----------HCCceec---------CCCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE---------NGTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-----------~~G~~~~---------~~t~~ 170 (281)
+++|+|||.|.||.++|..+... |++|+++++..+. .+.+. +.|...+ -....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSADR-LEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 48999999999999999999999 9999999876432 22211 1231100 00123
Q ss_pred CHHhhcCcCCEEEEccCChhH-H-HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 171 DIYETISGSDLVLLLISDAAQ-A-DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~-~-~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
+. +.+++||+|+.++|...+ . .++.++.+.++++++|+ .++++.+..+.+
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~ 129 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS 129 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 45 458899999999998654 3 47788889999999875 788888777665
No 81
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.97 E-value=5.4e-09 Score=102.64 Aligned_cols=128 Identities=19% Similarity=0.143 Sum_probs=96.3
Q ss_pred ccccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 69 ~~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
-+.+..|.+.-|....|+.+..+..+.+ .....-..++| ++++|||+|.+|..+|+.++.+ |++|+++++
T Consensus 157 ~Pvi~vnds~~K~~fDn~yg~g~s~~~~---i~r~t~~~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~ 226 (406)
T TIGR00936 157 FPAINVNDAYTKSLFDNRYGTGQSTIDG---ILRATNLLIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEV 226 (406)
T ss_pred CcEEEecchhhchhhhcccccchhHHHH---HHHhcCCCCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeC
Confidence 4557888899888777777777663321 00000024799 9999999999999999999998 999998876
Q ss_pred CCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCcc
Q 023490 149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 149 ~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~~ 215 (281)
.+.+ ...+...|+.. .+.+|+++++|+||.++.. ..+++ +.+..||+|++|+.++.+.
T Consensus 227 dp~r-~~~A~~~G~~v-----~~leeal~~aDVVItaTG~---~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 227 DPIR-ALEAAMDGFRV-----MTMEEAAKIGDIFITATGN---KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred Chhh-HHHHHhcCCEe-----CCHHHHHhcCCEEEECCCC---HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 6543 35566778863 4678999999999988763 45777 6899999999998766544
No 82
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.95 E-value=3.2e-09 Score=92.57 Aligned_cols=112 Identities=23% Similarity=0.286 Sum_probs=78.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
..|.| |++.|+|||..|+.+|+.|+.. |.+|++.+..+.+ .-+|...||.. .+++|+++++|+|+.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~DPi~-alqA~~dGf~v-----~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEIDPIR-ALQAAMDGFEV-----MTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SSHHH-HHHHHHTT-EE-----E-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECChHH-HHHhhhcCcEe-----cCHHHHHhhCCEEEEC
Confidence 35889 9999999999999999999999 9999999887543 34577789984 5899999999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeCCcch----hhhhhcccCCCCCceEEEeccCC
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLL----GHLQSIGLDFPKNIGVIAVCPKG 239 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l----~~l~~~~~~~~~~i~VIrvmPnt 239 (281)
|-... ++. +.+..||+|++|..++.+.. ..+.. ..+....+.|+.
T Consensus 86 TG~~~---vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~------~~~~~~~v~~~v 135 (162)
T PF00670_consen 86 TGNKD---VITGEHFRQMKDGAILANAGHFDVEIDVDALEA------NAVEREEVRPQV 135 (162)
T ss_dssp SSSSS---SB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT------CTSEEEEEETTE
T ss_pred CCCcc---ccCHHHHHHhcCCeEEeccCcCceeEeeccccc------cCcEEEEcCCCe
Confidence 88744 444 77888999999998887753 34443 135666666643
No 83
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.95 E-value=3.6e-09 Score=99.42 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=66.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC--------Cceec--CCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEE--NGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~--------G~~~~--~~t~~~~~E~l~~ADV 181 (281)
++|+|||+|+||.++|..|.+. |++|.+++|..+. .+...+. |.... -....+++|+++++|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 7999999999999999999999 9999999886432 2222222 21100 0014578888999999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEE-EeCCcc
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~~ 215 (281)
|++++|..... ++++.++++.+|+ .+.|+.
T Consensus 78 Vi~~v~~~~~~----~v~~~l~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 78 AVVAVPSKALR----ETLAGLPRALGYVSCAKGLA 108 (328)
T ss_pred EEEECchHHHH----HHHHhcCcCCEEEEEeeccc
Confidence 99999998643 4446677888665 667764
No 84
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.94 E-value=4.3e-09 Score=98.45 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=67.4
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
.+ |+|+|||+|+||.++|+.|.+. |++|.+++|... .+++++++++|+|++++|+
T Consensus 3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence 45 8999999999999999999999 999998887632 2677889999999999999
Q ss_pred hhHHHHHHHHHhc-CCCCcEEEEe-CCcc
Q 023490 189 AAQADNYEKIFSC-MKPNSILGLS-HGFL 215 (281)
Q Consensus 189 ~~~~~vl~ei~~~-mKpgaILi~a-aG~~ 215 (281)
.....+++++.++ ++++++|+.+ .|+.
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s~gi~ 86 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTATKGLD 86 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCCccc
Confidence 7667788887664 7888887654 3444
No 85
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.94 E-value=3.7e-09 Score=90.06 Aligned_cols=95 Identities=23% Similarity=0.335 Sum_probs=70.0
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec----------CCCcCCHHhhcCcCCEE
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSDLV 182 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~----------~~t~~~~~E~l~~ADVV 182 (281)
||+|||.|++|.++|.-|... |++|.++.|+.+ ..+.-.+.+.... -....|++++++++|+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~~-~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDEE-QIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCHH-HHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccHH-HHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 699999999999999999999 999999988743 2222222221100 01145789999999999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEE-EeCCc
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~ 214 (281)
++++|.+.+.++++++.++++++++|+ ...|+
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999999999999999998765 56787
No 86
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.93 E-value=5.1e-09 Score=104.31 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=71.6
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhc---CcCCEEEE
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETI---SGSDLVLL 184 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~---G--~~~~~~t~~~~~E~l---~~ADVViL 184 (281)
.|||||+|+||.++|++|.+. |++|.+++|..++. +...+. | +.. ..++++++ +++|+|++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~-~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKT-DEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHH-HHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEE
Confidence 489999999999999999999 99999999876543 333333 2 332 34666655 57999999
Q ss_pred ccCChhH-HHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 185 avP~~~~-~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
++|+... ..+++++.+++++|.+|++.+...
T Consensus 70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~ 101 (467)
T TIGR00873 70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSH 101 (467)
T ss_pred ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcC
Confidence 9999655 458899999999999999887543
No 87
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.92 E-value=3e-09 Score=100.75 Aligned_cols=94 Identities=23% Similarity=0.264 Sum_probs=78.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++||+||+|+||.+++.+|.+. |++|++++|..++ .+..++.|... ..++.|++++||+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 8999999999999999999999 9999999988543 45666778775 67999999999999999999877
Q ss_pred H-HHHH---HHHhcCCCCcEE-EEeCCcch
Q 023490 192 A-DNYE---KIFSCMKPNSIL-GLSHGFLL 216 (281)
Q Consensus 192 ~-~vl~---ei~~~mKpgaIL-i~aaG~~l 216 (281)
. +++. -++..++++... +++.-+..
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp 134 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDP 134 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCH
Confidence 5 4654 477778888866 78876664
No 88
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.91 E-value=1.5e-08 Score=96.59 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=76.2
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-----------HHCCceecC-----CCcCCHHh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-----------~~~G~~~~~-----~t~~~~~E 174 (281)
+++|+|||.|.||..+|..+... |++|+++++..+. .+.+ .+.|..... ....++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPGA-EAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999999 9999999876431 1111 112211000 11357889
Q ss_pred hcCcCCEEEEccCChhHHH--HHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 175 TISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 175 ~l~~ADVViLavP~~~~~~--vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
++++||+|+-++|.....+ ++.++.+.++++++|. -.+++.+..+..
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~ 129 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA 129 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH
Confidence 9999999999999877643 7789999999999774 456776666654
No 89
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.86 E-value=3.7e-08 Score=92.16 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=79.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G~~~~~---------~t~~ 170 (281)
|++|+|||.|.||.++|..|... |++|+++++..+. .+. ..+.|..... ....
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~~-~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPAA-AAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 9999999887432 222 1234431000 0145
Q ss_pred CHHhhcCcCCEEEEccCChhH--HHHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~--~~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
++.++++++|+|+.++|.... ..++.++.+..+++.+|. -+.+.....+.+ .++....++..||=.|
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p 144 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINP 144 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCC
Confidence 788899999999999998753 336667666666665553 334455555554 3333345666666544
No 90
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.85 E-value=2.4e-08 Score=98.27 Aligned_cols=167 Identities=20% Similarity=0.178 Sum_probs=115.8
Q ss_pred ccccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 69 ~~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
-+.+..|.+.-|....|+.+..+..+.+ ...... ..+.| ++++|+|+|.||..+++.++.+ |.+|++.++
T Consensus 164 ~Pv~~vnds~~K~~~dn~~g~g~s~~~~--i~r~t~-~~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~ 233 (413)
T cd00401 164 FPAINVNDSVTKSKFDNLYGCRESLIDG--IKRATD-VMIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEV 233 (413)
T ss_pred CCEEEecchhhcccccccchhchhhHHH--HHHhcC-CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 4557888888888777777777663321 011112 35799 9999999999999999999999 999988776
Q ss_pred CCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCcchhhhhhcccCCC
Q 023490 149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFP 227 (281)
Q Consensus 149 ~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~ 227 (281)
... ..+.|.+.|+.. .+.+++++.+|+|+.++.. ..+++ +.+..||+|.+|+.++.+... +....+. .
T Consensus 234 d~~-R~~~A~~~G~~~-----~~~~e~v~~aDVVI~atG~---~~~i~~~~l~~mk~GgilvnvG~~~~e-Id~~~L~-~ 302 (413)
T cd00401 234 DPI-CALQAAMEGYEV-----MTMEEAVKEGDIFVTTTGN---KDIITGEHFEQMKDGAIVCNIGHFDVE-IDVKGLK-E 302 (413)
T ss_pred Chh-hHHHHHhcCCEE-----ccHHHHHcCCCEEEECCCC---HHHHHHHHHhcCCCCcEEEEeCCCCCc-cCHHHHH-h
Confidence 643 456788889863 3677889999999998764 34676 568999999998876654321 1111111 2
Q ss_pred CCceEEEeccCCCCh-----hhHHhhhhCccccC
Q 023490 228 KNIGVIAVCPKGMGP-----SVRRLYVQGKEING 256 (281)
Q Consensus 228 ~~i~VIrvmPntpg~-----~vr~~y~~g~~~~~ 256 (281)
..++++.+.++.... ..-++..+|+-||=
T Consensus 303 ~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvnl 336 (413)
T cd00401 303 NAVEVVNIKPQVDRYELPDGRRIILLAEGRLVNL 336 (413)
T ss_pred hccEEEEccCCcceEEcCCcchhhhhhCcCCCCC
Confidence 356788888875431 34456677765453
No 91
>PLN02858 fructose-bisphosphate aldolase
Probab=98.84 E-value=1.4e-08 Score=112.18 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=78.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|||||+|+||..||++|.+. |++|.+++|..++ .+...+.|... ..++.|++++||+||+++|+.++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEISTPL-MEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 9999999887543 44555677764 56899999999999999999877
Q ss_pred HH-HH---HHHHhcCCCCcEEEEeCCcch
Q 023490 192 AD-NY---EKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 192 ~~-vl---~ei~~~mKpgaILi~aaG~~l 216 (281)
.+ ++ +.+++.+++|+++++.+-+..
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p 102 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILP 102 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCH
Confidence 54 65 358889999999998876664
No 92
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.84 E-value=2.7e-08 Score=95.29 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHH-HHHHH
Q 023490 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYEK 197 (281)
Q Consensus 123 G~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~-~vl~e 197 (281)
|.+||++|.+. |++|+++++.... ..+...+.|... ..+..|+++++|+||+++|+..+. ++++.
T Consensus 32 GspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~----AaS~aEAAa~ADVVIL~LPd~aaV~eVl~G 101 (341)
T TIGR01724 32 GSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV----VSDDKEAAKHGEIHVLFTPFGKGTFSIART 101 (341)
T ss_pred HHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee----cCCHHHHHhCCCEEEEecCCHHHHHHHHHH
Confidence 88999999999 9999999876432 123466778775 567899999999999999998875 57788
Q ss_pred HHhcCCCCcEEEEeCCcchhh----hhhcccCC-CCCceEEEeccC-CCChhhHHhhhhC
Q 023490 198 IFSCMKPNSILGLSHGFLLGH----LQSIGLDF-PKNIGVIAVCPK-GMGPSVRRLYVQG 251 (281)
Q Consensus 198 i~~~mKpgaILi~aaG~~l~~----l~~~~~~~-~~~i~VIrvmPn-tpg~~vr~~y~~g 251 (281)
+++++++|++|++++-+.... ++. .+.+ ++|+.|...||- .||.+-.+.|+-+
T Consensus 102 Laa~L~~GaIVID~STIsP~t~~~~~e~-~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~ 160 (341)
T TIGR01724 102 IIEHVPENAVICNTCTVSPVVLYYSLEK-ILRLKRTDVGISSMHPAAVPGTPQHGHYVIG 160 (341)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHH-HhhcCccccCeeccCCCCCCCCCCCceeeec
Confidence 999999999999988776432 222 2222 578999999985 4777777677654
No 93
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.84 E-value=1e-08 Score=94.10 Aligned_cols=109 Identities=22% Similarity=0.294 Sum_probs=76.8
Q ss_pred HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCC
Q 023490 126 QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN 205 (281)
Q Consensus 126 iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpg 205 (281)
+|+.|++. |+..+|..+ +.+....+.+++.|+..+ ..+..+.++++|+||||+|+....++++++.+++++|
T Consensus 1 ~A~aL~~~----g~~~~v~g~-d~~~~~~~~a~~~g~~~~---~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~ 72 (258)
T PF02153_consen 1 IALALRKA----GPDVEVYGY-DRDPETLEAALELGIIDE---ASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPG 72 (258)
T ss_dssp HHHHHHHT----TTTSEEEEE--SSHHHHHHHHHTTSSSE---EESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TT
T ss_pred ChHHHHhC----CCCeEEEEE-eCCHHHHHHHHHCCCeee---ccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCC
Confidence 57788887 222565544 444566778888998742 2233678999999999999999999999999999999
Q ss_pred cEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChh
Q 023490 206 SILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 206 aILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
++|++.++++-..++.....++.+.+||..|| +-|++
T Consensus 73 ~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e 109 (258)
T PF02153_consen 73 AIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE 109 (258)
T ss_dssp SEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS
T ss_pred cEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc
Confidence 99999999995433322225567899999999 88885
No 94
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.83 E-value=2.4e-08 Score=95.08 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=82.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC---------ceecC--CCcCCHHhhcCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGS 179 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G---------~~~~~--~t~~~~~E~l~~A 179 (281)
+++|+|||.|+||.++|..|.+. | +|.++.+... ..+...+.+ +.... ....+.+++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~~~-~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR------G-PTLQWVRSAE-TADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCCHH-HHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 37899999999999999999988 7 4566665432 222222222 11000 0134677889999
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCc-EEEEeCCcch-------hhhhhcccCCCCCceEEEeccCCC
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpga-ILi~aaG~~l-------~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
|+|++++|.....++++++.+++++++ +|++..|+.. +.+++ .++.....+..+||.+
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a 144 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIA 144 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHH
Confidence 999999999988889999999999887 4568889885 34554 3444334567777655
No 95
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.82 E-value=1.4e-08 Score=100.21 Aligned_cols=125 Identities=20% Similarity=0.132 Sum_probs=90.1
Q ss_pred ccccccchhhhhhhhhcccchhhhhcCCCc--ccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 71 LLDFETSVFKKDAISLANRDEFIVRGGRDL--FKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 71 ~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~--f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
.+..|.+.-|....|. +.+.+|-|. ....-..+.| ++++|||+|.||..+|+.++.. |++|+++++
T Consensus 176 v~~vn~s~~K~~~dn~-----~gt~~s~~~ai~rat~~~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~ 243 (425)
T PRK05476 176 AINVNDSVTKSKFDNR-----YGTGESLLDGIKRATNVLIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEV 243 (425)
T ss_pred EEecCCcccCcccccc-----HHHHhhhHHHHHHhccCCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcC
Confidence 3555666666433333 334555563 1110124799 9999999999999999999999 999998887
Q ss_pred CCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCcch
Q 023490 149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 149 ~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l 216 (281)
...+ ...+...|+. ..+++++++.+|+||.++.. .++++ +.+..||+|++++.++.+..
T Consensus 244 dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aTG~---~~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 244 DPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTATGN---KDVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred Cchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECCCC---HHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 6544 3445566776 34788999999999998754 34777 78999999999988776653
No 96
>PLN02858 fructose-bisphosphate aldolase
Probab=98.82 E-value=2.1e-08 Score=110.82 Aligned_cols=95 Identities=21% Similarity=0.200 Sum_probs=76.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|||||+|+||.+||++|.+. |++|.++++...+ .+...+.|... ..++.+++++||+|++++|+..+
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~~ 393 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKPT-LVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEVQ 393 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEecCChHH
Confidence 8999999999999999999999 9999999887543 34445566543 45889999999999999997665
Q ss_pred H-HHHH---HHHhcCCCCcEEEEeCCcchh
Q 023490 192 A-DNYE---KIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 192 ~-~vl~---ei~~~mKpgaILi~aaG~~l~ 217 (281)
. +++. .+++.+++|.++++.+-+...
T Consensus 394 v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~ 423 (1378)
T PLN02858 394 AENVLFGDLGAVSALPAGASIVLSSTVSPG 423 (1378)
T ss_pred HHHHHhchhhHHhcCCCCCEEEECCCCCHH
Confidence 4 5662 578889999999988776643
No 97
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.81 E-value=2e-08 Score=97.51 Aligned_cols=93 Identities=20% Similarity=0.217 Sum_probs=70.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-------------------HCC-ceecCCCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-------------------~~G-~~~~~~t~~~ 171 (281)
|+|+|||+|.||..+|..|.+. |++|+++++...+ .+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 5799999999999999999998 9999888776432 22111 123 222 347
Q ss_pred HHhhcCcCCEEEEccCChh----------HHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~----------~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
..++++++|+||+++|... ....++++.+.++++++|++.+++.
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~ 123 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVP 123 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCC
Confidence 7888999999999999753 3446667888999999998877653
No 98
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.78 E-value=5.4e-08 Score=93.51 Aligned_cols=110 Identities=12% Similarity=0.102 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh-HHHHHHH
Q 023490 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEK 197 (281)
Q Consensus 123 G~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~-~~~vl~e 197 (281)
|.++|++|... |++|.++++.... ..+...+.|+.. ..+..++++++|+||+++|+.. ...++++
T Consensus 32 G~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~----asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~ 101 (342)
T PRK12557 32 GSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV----VSDDAEAAKHGEIHILFTPFGKKTVEIAKN 101 (342)
T ss_pred HHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE----eCCHHHHHhCCCEEEEECCCcHHHHHHHHH
Confidence 88999999998 9999999876431 223455677764 4578899999999999999988 4568889
Q ss_pred HHhcCCCCcEEEEeCCcchhhh-hhcccCCCCCceEEEeccCCCCh
Q 023490 198 IFSCMKPNSILGLSHGFLLGHL-QSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 198 i~~~mKpgaILi~aaG~~l~~l-~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
+.+.++++++|++++.+..... +.....++.....++++|+.|++
T Consensus 102 L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~ 147 (342)
T PRK12557 102 ILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAA 147 (342)
T ss_pred HHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcc
Confidence 9999999999988777664432 11001333333456676766654
No 99
>PLN02494 adenosylhomocysteinase
Probab=98.77 E-value=3.5e-08 Score=98.51 Aligned_cols=125 Identities=17% Similarity=0.117 Sum_probs=94.8
Q ss_pred ccccccccchhhhhhhhhcccchhhhhcCCCc-cc-ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEE
Q 023490 69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDL-FK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG 146 (281)
Q Consensus 69 ~~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~-f~-~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig 146 (281)
-+.+..|.+.-|....|+-+..+.. |. +. ..-..+.| ++++|||+|.||..+|+.++.+ |++|++.
T Consensus 216 ~Pvi~vnds~~K~~fDn~yGtgqS~-----~d~i~r~t~i~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~ 283 (477)
T PLN02494 216 FPAINVNDSVTKSKFDNLYGCRHSL-----PDGLMRATDVMIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVT 283 (477)
T ss_pred CCEEEEcChhhhhhhhccccccccH-----HHHHHHhcCCccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEE
Confidence 3458889999998888887776662 42 11 11134799 9999999999999999999998 9999888
Q ss_pred ecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHH-HHHHhcCCCCcEEEEeCCc
Q 023490 147 LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 147 ~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl-~ei~~~mKpgaILi~aaG~ 214 (281)
++.+.+ ...+...|+.. .+++|+++++|+|+.++.. .+++ .+.+..||+|++|+.++.+
T Consensus 284 e~dp~r-~~eA~~~G~~v-----v~leEal~~ADVVI~tTGt---~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 284 EIDPIC-ALQALMEGYQV-----LTLEDVVSEADIFVTTTGN---KDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred eCCchh-hHHHHhcCCee-----ccHHHHHhhCCEEEECCCC---ccchHHHHHhcCCCCCEEEEcCCC
Confidence 776432 34566778763 3788999999999986553 2455 4889999999999876553
No 100
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.75 E-value=1.2e-07 Score=88.97 Aligned_cols=102 Identities=26% Similarity=0.303 Sum_probs=75.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC--C-----------CcCCHHhhcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G-----------TLGDIYETIS 177 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~--~-----------t~~~~~E~l~ 177 (281)
|++|+|||.|.||..+|..|... |++|.+++|.. ..+...+.|....+ + ...+. +.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRAR--IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA 72 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecHH--HHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc
Confidence 47899999999999999999999 99999888752 22334445543211 0 01233 5678
Q ss_pred cCCEEEEccCChhHHHHHHHHHhcCCCCcEEE-EeCCcch-hhhhh
Q 023490 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQS 221 (281)
Q Consensus 178 ~ADVViLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~~l-~~l~~ 221 (281)
++|+|++++|.....++++++.+.++++++|+ ...|+.. ..++.
T Consensus 73 ~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~ 118 (341)
T PRK08229 73 TADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRA 118 (341)
T ss_pred CCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHH
Confidence 99999999999887788889999999998765 5577763 44554
No 101
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.73 E-value=8.4e-08 Score=93.96 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=68.2
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh---------------
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~--------------- 175 (281)
+++|+|||+|.||..+|.+|.+. |++|+.+++...+ .+ +...|.... ....++++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~~~~-v~-~l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDINQHA-VD-TINRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCCHHH-HH-HHHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999999 9999888776432 22 233333210 01122222
Q ss_pred cCcCCEEEEccCCh----------hHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 176 ISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 176 l~~ADVViLavP~~----------~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
+++||+||+|+|.. .....++.+.+++++|++|++.+.+..
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~p 123 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPV 123 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 44899999999974 344466789999999999987665543
No 102
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.73 E-value=1.4e-07 Score=87.90 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=73.5
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G~~~~~---------~t~~ 170 (281)
+++|||||.|.||..+|..+... |++|+++++..+. .+. ..+.|...+. ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEEL-ATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 57999999999999999999998 9999999887542 222 2233321000 0134
Q ss_pred CHHhhcCcCCEEEEccCChhHHH--HHHHHHhcC-CCCcEEEE-eCCcchhhhhh
Q 023490 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCM-KPNSILGL-SHGFLLGHLQS 221 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~~--vl~ei~~~m-KpgaILi~-aaG~~l~~l~~ 221 (281)
+. +.+++||+|+-++|.....+ ++.++-..+ +|+++|.. ++++.+..+..
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~ 131 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA 131 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 56 56899999999999977654 666777776 89998864 56666666554
No 103
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.73 E-value=1.2e-07 Score=95.17 Aligned_cols=100 Identities=18% Similarity=0.271 Sum_probs=75.8
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCC-------------ceec
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTEE 165 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G-------------~~~~ 165 (281)
.+++|||||.|.||..+|+.+... |++|+++++..+. .+. ..+.| +..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~- 77 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAGA-AAAARDGIAARLAKLVEKGKLTAEQADAALARLRP- 77 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-
Confidence 368999999999999999999998 9999999887542 222 23344 232
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHH--HHHHHHhcCCCCcEE-EEeCCcchhhhhh
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSIL-GLSHGFLLGHLQS 221 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~--vl~ei~~~mKpgaIL-i~aaG~~l~~l~~ 221 (281)
..+.++ +++||+||.++|.....+ ++.++...++++++| +..+.+.+..+..
T Consensus 78 ---~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~ 132 (507)
T PRK08268 78 ---VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA 132 (507)
T ss_pred ---eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 345655 679999999999977653 667877888999998 5778888766654
No 104
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.70 E-value=1.9e-08 Score=83.51 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=68.9
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
++++ ++|+|||.|.||.++++.+++. | .+|.++++..++..+.+.+.+.........+.+++++++|+|+++
T Consensus 16 ~~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~ 88 (155)
T cd01065 16 ELKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINT 88 (155)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeC
Confidence 4678 9999999999999999999987 6 578888876544333344444310000144777889999999999
Q ss_pred cCChhH-H-H-HHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQ-A-D-NYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~-~-~-vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+|+..+ . . .+.. ..++++.+++++.-..
T Consensus 89 ~~~~~~~~~~~~~~~--~~~~~~~~v~D~~~~~ 119 (155)
T cd01065 89 TPVGMKPGDELPLPP--SLLKPGGVVYDVVYNP 119 (155)
T ss_pred cCCCCCCCCCCCCCH--HHcCCCCEEEEcCcCC
Confidence 999775 1 1 1221 2368899988775443
No 105
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.69 E-value=1e-07 Score=89.61 Aligned_cols=93 Identities=23% Similarity=0.368 Sum_probs=74.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
..+.| ++++|||+|.+|..+++.|+.. |.+|.+++|+..+ .+.+.+.|+... .+.++.+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~~-~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSAH-LARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 46789 9999999999999999999998 9999999887543 455667776531 123567889999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeC
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aa 212 (281)
+|.. ++. +.+..|+++++|++.+
T Consensus 218 ~p~~----~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 IPAL----VLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CChh----hhhHHHHHcCCCCcEEEEEc
Confidence 9863 343 7788999999998654
No 106
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.69 E-value=2.4e-07 Score=85.15 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=75.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCC---------CcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~---------t~~~~~E~l~~ADVV 182 (281)
|+|+|||.|.||..+|..|... |++|.++.| .+ ..+...+.|+..... ...+.+++++.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-PK-RAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-HH-HHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 999988887 33 334445556532110 123456667899999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEE-EeCCcc-hhhhhh
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQS 221 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~~-l~~l~~ 221 (281)
++++|.....++++++.+.++++++|+ +..|+. .+.+..
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~ 113 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP 113 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH
Confidence 999999888888888888888888664 667876 334443
No 107
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.65 E-value=3.7e-07 Score=83.59 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=75.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC-------CCcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~-------~t~~~~~E~l~~ADVViL 184 (281)
|+|+|||.|+||..+|..|... |++|.+.+|..+ ..+...+.|+..++ ....+.+++ +.+|+|++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 5799999999999999999998 999988887543 23444445653200 112345554 89999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcE-EEEeCCcc-hhhhhh
Q 023490 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFL-LGHLQS 221 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaI-Li~aaG~~-l~~l~~ 221 (281)
++|......+++++.+.+.++++ |++..|+. .+.++.
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~ 111 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA 111 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 99998888899999999988865 45778876 344443
No 108
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.64 E-value=1.3e-07 Score=91.30 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=98.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~-l~~ADVViLavP~~~ 190 (281)
.+|||||+|+||+=+|.-+.+. |+.|+.++|.+- ...++++|..- +..+.++ -++.|+|++|+.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsdy--ssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSDY--SSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcchh--HHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 7899999999999999999999 999988888753 34556666542 4455554 467999999999877
Q ss_pred HHHHHHHHHhc-CCCCcEEEEeCCcch---hhhhhcccCCCCCceEEEeccCCCChh-hHHhhhhCccccCCCceeEEEe
Q 023490 191 QADNYEKIFSC-MKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAV 265 (281)
Q Consensus 191 ~~~vl~ei~~~-mKpgaILi~aaG~~l---~~l~~~~~~~~~~i~VIrvmPntpg~~-vr~~y~~g~~~~~~g~~~~~av 265 (281)
+..++...-+. +|.|+++++.-.++. ..+++ .+|+|.+++.+|| +=||. +. -.++|+|-.+--
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHp-mfGPksvn--------h~wqglpfVydk 188 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHP-MFGPKSVN--------HEWQGLPFVYDK 188 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecC-CcCCCcCC--------CccccCceEEEE
Confidence 77777754444 899999887665553 44444 7899999999999 66776 31 124677776655
Q ss_pred ee
Q 023490 266 HQ 267 (281)
Q Consensus 266 ~~ 267 (281)
|-
T Consensus 189 vR 190 (480)
T KOG2380|consen 189 VR 190 (480)
T ss_pred ee
Confidence 43
No 109
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.58 E-value=5.2e-07 Score=90.75 Aligned_cols=102 Identities=15% Similarity=0.194 Sum_probs=72.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G~~~~~---------~t~~ 170 (281)
+++|||||.|.||..||+.+... |++|+++++..+. .+. ..+.|...+. ....
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 77 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVT 77 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeC
Confidence 58999999999999999999999 9999999887542 221 2233421000 0134
Q ss_pred CHHhhcCcCCEEEEccCChhHH-H-HHHHHHhcCCCCcEEE-EeCCcchhhhh
Q 023490 171 DIYETISGSDLVLLLISDAAQA-D-NYEKIFSCMKPNSILG-LSHGFLLGHLQ 220 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~-~-vl~ei~~~mKpgaILi-~aaG~~l~~l~ 220 (281)
++++ +++||+||.++|..... + ++.++...++++++|. ..+.+.+..+.
T Consensus 78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA 129 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIA 129 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHH
Confidence 6654 67999999999986654 3 6778888899998875 56777765543
No 110
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.57 E-value=6.4e-07 Score=84.02 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=71.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC--Cce------ecC--CCcCCHHhhc-CcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EEN--GTLGDIYETI-SGSD 180 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~--G~~------~~~--~t~~~~~E~l-~~AD 180 (281)
|+|+|||.|.||.++|..|.+. |++|.++.|..+ ..+.-.+. +.. ... ....+.++.+ .++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHT-TFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHH-HHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 4799999999999999999999 999988887532 22222221 111 000 0124566666 5899
Q ss_pred EEEEccCChhHHHHHHHHHh-cCCCCc-EEEEeCCcch
Q 023490 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFLL 216 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~-~mKpga-ILi~aaG~~l 216 (281)
+|++++|+....++++++.+ ++++++ +|++..|+..
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 99999999999999999988 888876 5567888843
No 111
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.54 E-value=9.3e-07 Score=77.35 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=75.3
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-----------HHCCcee---------cCCCcCCH
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTE---------ENGTLGDI 172 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-----------~~~G~~~---------~~~t~~~~ 172 (281)
+|+|||.|.||..+|..+... |++|.++++..+ ..+.+ .+.|... .-....++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 699999999999999999999 999999987643 11111 1111100 00113578
Q ss_pred HhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 173 YETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
+++. ++|+||=++|..... +++.++-+.++|+++|. ...++.+..+.. .++..-+++..|+=.|.
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~ 141 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPP 141 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SST
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEeccccc
Confidence 8877 999999999986654 38889999999999884 678888888775 22233356666664443
No 112
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.49 E-value=7.5e-07 Score=85.71 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=73.0
Q ss_pred EEEEEccCchHHHHHHHHHhhh--hhccCCcEEEEEecCC---cccHHHHH-HC--------CceecC--CCcCCHHhhc
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSL--AEAKSDIVVKVGLRKG---SRSFAEAR-AA--------GFTEEN--GTLGDIYETI 176 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~--~~~~~G~~Viig~r~~---~~s~~~A~-~~--------G~~~~~--~t~~~~~E~l 176 (281)
+|+|||.|+.|.++|..|.+.- ..-.|+++|.++.|.. .+...... +. |+..-+ ....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998870 0000228999888732 11111111 10 221100 0135788999
Q ss_pred CcCCEEEEccCChhHHHHHHHHHhcCCCCcE-EEEeCCcchh
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLG 217 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~~mKpgaI-Li~aaG~~l~ 217 (281)
++||+|++++|++...++++++.++++++++ |+++.|+...
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 9999999999999999999999999998885 5688998754
No 113
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.47 E-value=9.7e-07 Score=85.69 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=73.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhh-hhccCCcEEEEEecCCcc----cHHHHHHCC--------ceecC--CCcCCHHhhc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSL-AEAKSDIVVKVGLRKGSR----SFAEARAAG--------FTEEN--GTLGDIYETI 176 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~-~~~~~G~~Viig~r~~~~----s~~~A~~~G--------~~~~~--~t~~~~~E~l 176 (281)
++|+|||.|++|.++|..|.+.- ....||++|.++.|+... ..+.-.+.+ +...+ ....|+++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 78999999999999999998870 000123788888776431 111111111 11000 0135788999
Q ss_pred CcCCEEEEccCChhHHHHHHHHHh--cCCCCcE-EEEeCCcch
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFS--CMKPNSI-LGLSHGFLL 216 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~--~mKpgaI-Li~aaG~~l 216 (281)
+++|+|++++|++...++++++.+ +++++++ |++++|+..
T Consensus 92 ~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 92 EDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred hcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 999999999999999999999888 8888864 558999874
No 114
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.46 E-value=1.1e-06 Score=81.70 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=63.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|||||+|.||+.++++|.+.+ .++++. ++++..++..+.+.+.|... .+.+++++++++|+|++++|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 167765 45554433334455555421 14689999999999999999988
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeCC
Q 023490 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (281)
Q Consensus 191 ~~~vl~ei~~~mKpga-ILi~aaG 213 (281)
+.++..+.+. .|. +++.+.|
T Consensus 80 h~e~~~~aL~---aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVLA---AGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHHH---cCCcEEEecch
Confidence 7777665543 444 4444444
No 115
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.45 E-value=6.1e-07 Score=85.18 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=62.9
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |+|+|||.| .||..+|..|.+. |+.|.+++++. .++.|++++||+|++
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 47999 999999996 9999999999999 99999886542 157789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++... .+++. .+|+|++|++++
T Consensus 209 avg~~~---~v~~~--~ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPR---LIDAD--WLKPGAVVIDVG 231 (301)
T ss_pred ecCChh---cccHh--hccCCcEEEEec
Confidence 999864 33322 289999998864
No 116
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.44 E-value=1.1e-06 Score=81.16 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=57.9
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
|++|||||+|.||..+++.+.+. +.++++. ++++..++..+.+...+... +.+++|++.++|+|++++|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 47999999999999999999875 1135544 44444333223334445442 568899989999999999998
Q ss_pred hHHHHHHHHHh
Q 023490 190 AQADNYEKIFS 200 (281)
Q Consensus 190 ~~~~vl~ei~~ 200 (281)
.+.++..+.+.
T Consensus 73 ~~~~~~~~al~ 83 (265)
T PRK13304 73 AVEEVVPKSLE 83 (265)
T ss_pred HHHHHHHHHHH
Confidence 87777666554
No 117
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.42 E-value=3.7e-06 Score=80.73 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=96.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH------HC-Cceec--CCCcCCHHhhcCcCCE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------AA-GFTEE--NGTLGDIYETISGSDL 181 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~------~~-G~~~~--~~t~~~~~E~l~~ADV 181 (281)
+++|+|||.|+-|.++|+-|.+. |++|.++.|+.+...+.-. .. |+... -....|+++++++||+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~ 74 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADI 74 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence 47999999999999999999999 9999988876321111110 00 11110 0124579999999999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEE-EEeCCcch-------hhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCcc
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l-------~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~ 253 (281)
|++++|-+...++++++.+++++++++ +.+.|+.. +.+++ .+|.+. +.+ ..||+.-+.--+
T Consensus 75 iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~--~~v---LSGPs~A~EVa~--- 143 (329)
T COG0240 75 IVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNP--IAV---LSGPSFAKEVAQ--- 143 (329)
T ss_pred EEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCe--EEE---EECccHHHHHhc---
Confidence 999999999999999888889888865 57888764 23443 445443 322 345555444344
Q ss_pred ccCCCceeEEEeeeCCCcchh
Q 023490 254 INGAGINSSFAVHQVLSEPLF 274 (281)
Q Consensus 254 ~~~~g~~~~~av~~d~~g~a~ 274 (281)
|.|+...|.-.....|.
T Consensus 144 ----g~pta~~vas~d~~~a~ 160 (329)
T COG0240 144 ----GLPTAVVVASNDQEAAE 160 (329)
T ss_pred ----CCCcEEEEecCCHHHHH
Confidence 67888777554443333
No 118
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.38 E-value=1.6e-06 Score=85.44 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=64.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee--c---------C-CCcCCHHhhcCcC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E---------N-GTLGDIYETISGS 179 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~--~---------~-~t~~~~~E~l~~A 179 (281)
++|||||+|.||..+|.++. . |++|+.+++...+ .+... .|... | + -.+.+..+.+++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la-~------~~~V~g~D~~~~~-ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFG-K------SRQVVGFDVNKKR-ILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHh-c------CCEEEEEeCCHHH-HHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 89999999999999999965 3 6888887776433 33322 33320 0 0 0123444679999
Q ss_pred CEEEEccCCh------hH-HHHH---HHHHhcCCCCcEEEEeCCcc
Q 023490 180 DLVLLLISDA------AQ-ADNY---EKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 180 DVViLavP~~------~~-~~vl---~ei~~~mKpgaILi~aaG~~ 215 (281)
|++|+|+|.. .. ..++ +.+.+++++|++|++.+-+.
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~ 123 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY 123 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 9999999965 12 2343 36889999999988755444
No 119
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=1.5e-06 Score=80.69 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=83.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh---hcCcCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---TISGSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E---~l~~ADVViLavP~ 188 (281)
|+||.||+|.||..+.++|.+. |++|+.+++. ....+.+...|.+. ..+++| .+..--+|-|.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdvV~yD~n-~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDVVGYDVN-QTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeEEEEcCC-HHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 6899999999999999999999 9998777665 45677888888664 445555 46667899999999
Q ss_pred hhHH-HHHHHHHhcCCCCcEEEEeCCcchh-hhhhcccCCCCCceEEEe
Q 023490 189 AAQA-DNYEKIFSCMKPNSILGLSHGFLLG-HLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 189 ~~~~-~vl~ei~~~mKpgaILi~aaG~~l~-~l~~~~~~~~~~i~VIrv 235 (281)
...+ .+++++.+.|.+|.+||+-+--... .++.......++++++.+
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~ 118 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDV 118 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEec
Confidence 8555 5999999999999999987553321 111111133456777654
No 120
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.36 E-value=2.2e-06 Score=76.77 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=65.8
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|+|||- |.||+.+++.+++. |+.|. ++++|+|+||+|...
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 58999997 99999999999999 98863 247999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
..++++++. .+|+|.++++-...+. ..+||..|| +-||+.
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~~-------~~~~vg~HP-MfGp~~ 83 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKKY-------SGKIVSIHP-LFGPMS 83 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHHh-------cCCEEecCC-CCCCCc
Confidence 888888753 3788999998743332 347999999 557443
No 121
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.31 E-value=1.8e-06 Score=76.87 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=59.9
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEE
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~-~ADVVi 183 (281)
..+++| |+|+|+|+|+||..+|+.|.+. |++|++.++...+..+.....|... .+.++++. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 367899 9999999999999999999999 9999877765433222333435442 24455654 799999
Q ss_pred EccCChhHHHHHH-HHHhcCCCCcEEE
Q 023490 184 LLISDAAQADNYE-KIFSCMKPNSILG 209 (281)
Q Consensus 184 LavP~~~~~~vl~-ei~~~mKpgaILi 209 (281)
.+.... ++. +.++.|+.. +|+
T Consensus 91 p~A~~~----~I~~~~~~~l~~~-~v~ 112 (200)
T cd01075 91 PCALGG----VINDDTIPQLKAK-AIA 112 (200)
T ss_pred eccccc----ccCHHHHHHcCCC-EEE
Confidence 776543 333 444556543 444
No 122
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.30 E-value=2.9e-06 Score=82.21 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=68.3
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC--CCcCCHHhhcCcCCEEEEc
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--GTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~--~t~~~~~E~l~~ADVViLa 185 (281)
+.+ .++.|||.|.+|...++.++.. |.+|.++++...+........+..... ....++.+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 667 8899999999999999999998 999888887644322222334432100 0012466788999999999
Q ss_pred cCC--hhHHHHH-HHHHhcCCCCcEEEEeC
Q 023490 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~--~~~~~vl-~ei~~~mKpgaILi~aa 212 (281)
++. .....++ ++.+..||++.+|++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 853 2223345 47788899999988653
No 123
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.27 E-value=4e-06 Score=79.06 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=70.0
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+.| ++|+|||.|.||..+++.|+.. | .+|.+.+|...+..+.+.+.|.... ...+..+.+.++|+||.+
T Consensus 175 ~l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 175 NLKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISA 245 (311)
T ss_pred CccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEEC
Confidence 3789 9999999999999999999986 5 4788888876555566777765421 123467888999999999
Q ss_pred cCChhHHHHHHHHHhcC-CCCcEEEEeC
Q 023490 186 ISDAAQADNYEKIFSCM-KPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~m-KpgaILi~aa 212 (281)
+|......++.+..... +++.++++.+
T Consensus 246 t~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 246 TGAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 99866544555444333 3456777655
No 124
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.27 E-value=4.1e-06 Score=81.74 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=62.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH----------------CCceecCCCcCCHHhh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~----------------~G~~~~~~t~~~~~E~ 175 (281)
|+|+|||+|.||..+|..+ +. |++|+.+++..++ .+...+ .+.... ...+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~VigvD~d~~k-v~~l~~g~~~~~e~~l~~~l~~~~~~l~--~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVALDILPSR-VAMLNDRISPIVDKEIQQFLQSDKIHFN--ATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEEECCHHH-HHHHHcCCCCCCCcCHHHHHHhCCCcEE--Eecchhhh
Confidence 4799999999999999654 46 8999888776432 332222 111110 01246788
Q ss_pred cCcCCEEEEccCCh----------hH-HHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 176 ISGSDLVLLLISDA----------AQ-ADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 176 l~~ADVViLavP~~----------~~-~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
++++|+|++++|.. .. ..+++++.. +++|++|++.+-+.
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 89999999999965 22 345666766 79999887655444
No 125
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.24 E-value=3.6e-06 Score=79.80 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=61.9
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+++| |+|+||| .|.||..+|++|.+. |+.|.++..+. .+++|++++||+|+++
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 7999 9999999 999999999999998 99998885321 1457889999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++... .+++. ++++|++|++++
T Consensus 209 vg~~~---~v~~~--~lk~GavVIDvG 230 (296)
T PRK14188 209 VGRPE---MVKGD--WIKPGATVIDVG 230 (296)
T ss_pred cCChh---hcchh--eecCCCEEEEcC
Confidence 99865 34432 299999998874
No 126
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.23 E-value=7.1e-06 Score=78.63 Aligned_cols=148 Identities=20% Similarity=0.134 Sum_probs=106.2
Q ss_pred cccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 70 FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 70 ~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
+-++.|-|+-|.+..++-+-.|.++. |--.- --.-+.| |...|.|+|..|+.-|+.|+.+ |..|++..-.
T Consensus 177 PAiNVNDSVTKsKFDnLygcreSl~D-gikra--TDvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------g~~VivTEiD 246 (434)
T KOG1370|consen 177 PAINVNDSVTKSKFDNLYGCRESLLD-GIKRA--TDVMIAG-KVAVVCGYGDVGKGCAQALKGF------GARVIVTEID 246 (434)
T ss_pred ceeeccchhhhhhccccccchhhhhh-hhhhh--hhheecc-cEEEEeccCccchhHHHHHhhc------CcEEEEeccC
Confidence 44889999999999999888877442 11000 0023788 9999999999999999999998 9999888766
Q ss_pred CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCC
Q 023490 150 GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN 229 (281)
Q Consensus 150 ~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~ 229 (281)
+-.. -.|.-.|+. ...++|++++.||++..+--... +..+.+..||.++||...+-|..+ ++...+.- ..
T Consensus 247 PI~A-LQAaMeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd~E-iDv~~L~~-~~ 316 (434)
T KOG1370|consen 247 PICA-LQAAMEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFDTE-IDVKWLNT-PA 316 (434)
T ss_pred chHH-HHHHhhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEeccccccce-eehhhccC-Cc
Confidence 5433 345567887 45899999999999998876432 345889999999999876666542 22222332 24
Q ss_pred ceEEEecc
Q 023490 230 IGVIAVCP 237 (281)
Q Consensus 230 i~VIrvmP 237 (281)
.+.+++-|
T Consensus 317 ~~~~~vk~ 324 (434)
T KOG1370|consen 317 LTWENVKP 324 (434)
T ss_pred ceeeeccc
Confidence 56666665
No 127
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.23 E-value=6.2e-06 Score=65.60 Aligned_cols=82 Identities=26% Similarity=0.297 Sum_probs=61.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
.+|||||+|.+|+...+.++.. ..+.++. ++++...+....+++.|+.. +.+.+++++ +.|+|++++|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence 3799999999999999888876 1245655 44444333334466788874 789999998 79999999999
Q ss_pred hhHHHHHHHHHhc
Q 023490 189 AAQADNYEKIFSC 201 (281)
Q Consensus 189 ~~~~~vl~ei~~~ 201 (281)
..+.+++.+.+..
T Consensus 73 ~~h~~~~~~~l~~ 85 (120)
T PF01408_consen 73 SSHAEIAKKALEA 85 (120)
T ss_dssp GGHHHHHHHHHHT
T ss_pred cchHHHHHHHHHc
Confidence 9888877766554
No 128
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.19 E-value=1.1e-05 Score=66.90 Aligned_cols=112 Identities=20% Similarity=0.268 Sum_probs=79.5
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCC----------cCCHHhhcCcCCEEE
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t----------~~~~~E~l~~ADVVi 183 (281)
|.|+|.|.||.-+|..|... |++|.+..|.. ..+.-++.|+...+.. ..+..+..+..|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999988 99998888764 2344556676543211 011124678899999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEE-EEeCCcc-hhhhhhcccCCCCCceEEEecc
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaIL-i~aaG~~-l~~l~~~~~~~~~~i~VIrvmP 237 (281)
++++-.+....++.+.+++++++.| ++--|+. .+.+++ .++.+ .++..+.
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~---~~~~~-~v~~g~~ 124 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAE---YFPRP-RVLGGVT 124 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHC---HSTGS-GEEEEEE
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHH---HcCCC-cEEEEEE
Confidence 9999999999999999999998654 5667777 345554 44443 5554443
No 129
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.18 E-value=2.5e-05 Score=73.27 Aligned_cols=101 Identities=24% Similarity=0.294 Sum_probs=72.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec--CCC-------cCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~--~~t-------~~~~~E~l~~ADVV 182 (281)
++|+|||.|.||..+|..|.+. |++|.+..|.. .+...+.|+... ++. ..+..+.+..+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7899999999999999999999 99999888864 233344554321 010 01122356789999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEE-EEeCCcch-hhhhh
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQS 221 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l-~~l~~ 221 (281)
++++|..+..+.++.+.+.++++.+| .+--|+.. +.+..
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~ 117 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE 117 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 99999988777888888888888765 46667764 34444
No 130
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.15 E-value=2e-06 Score=71.75 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=68.3
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhcCcCCE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G---~~~~~~t~~~~~E~l~~ADV 181 (281)
.+++| +++.|||.|-+|++++..|.+. |.+ |.+.+|..++..+.+.+.+ +.. -.+.++.+.+.++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 47899 9999999999999999999999 885 8999998665555665552 211 114567778999999
Q ss_pred EEEccCChhHHHHHH-HHHhcCCCC-cEEEEeC
Q 023490 182 VLLLISDAAQADNYE-KIFSCMKPN-SILGLSH 212 (281)
Q Consensus 182 ViLavP~~~~~~vl~-ei~~~mKpg-aILi~aa 212 (281)
||.++|.... .+. +.+....+. .++++.+
T Consensus 79 vI~aT~~~~~--~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 79 VINATPSGMP--IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp EEE-SSTTST--SSTHHHHTTTCHHCSEEEES-
T ss_pred EEEecCCCCc--ccCHHHHHHHHhhhhceeccc
Confidence 9999997544 333 444443332 3777764
No 131
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.15 E-value=7.4e-06 Score=81.78 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhcCc---CCEEEEccCChhHHH-
Q 023490 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQAD- 193 (281)
Q Consensus 122 mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~----G~~~~~~t~~~~~E~l~~---ADVViLavP~~~~~~- 193 (281)
||..||++|.+. |++|.+++|..++..+..... |+.. ..+++|+++. +|+|++++|.....+
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999999999866544433322 3553 5688888875 899999999987665
Q ss_pred HHHHHHhcCCCCcEEEEeCCcc
Q 023490 194 NYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 194 vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+++++++.|.+|.+||+.+-..
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~ 92 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSN 92 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCC
Confidence 8899999999999999986543
No 132
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.15 E-value=9.2e-06 Score=71.62 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=58.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC---------------------ceecCCCcC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------------------FTEENGTLG 170 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G---------------------~~~~~~t~~ 170 (281)
|+|+|||+|-+|..+|..+.+. |++|+.++.. ++..+ ....| +.. ..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~g~D~~-~~~v~-~l~~g~~p~~E~~l~~ll~~~~~~~~l~~----t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVIGVDID-EEKVE-ALNNGELPIYEPGLDELLKENVSAGRLRA----TT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEEEE-S--HHHHH-HHHTTSSSS-CTTHHHHHHHHHHTTSEEE----ES
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEEEEeCC-hHHHH-HHhhccccccccchhhhhccccccccchh----hh
Confidence 7999999999999999999999 9998766543 22121 12222 121 34
Q ss_pred CHHhhcCcCCEEEEccCChh----------HHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 171 DIYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~----------~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+.+++++++|++++|+|... ....++++.++++++++|++-+-+.
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvp 123 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVP 123 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSS
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEE
Confidence 67888999999999998421 2345678999999999987654433
No 133
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.14 E-value=4.6e-06 Score=81.12 Aligned_cols=128 Identities=23% Similarity=0.196 Sum_probs=98.8
Q ss_pred cccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 70 FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 70 ~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
+.++.|.++-|...+|+-+..+..+.+ - .-. .=.-++| |++.|.|||..|+.+|++++.. |.+|++.+-.
T Consensus 172 Pai~VNDs~tK~~FDNrYGtgqS~~Dg-I-~Ra-Tn~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvD 241 (420)
T COG0499 172 PAINVNDSVTKSLFDNRYGTGQSLLDG-I-LRA-TNVLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVD 241 (420)
T ss_pred ceEeecchhhhcccccccccchhHHHH-H-Hhh-hceeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecC
Confidence 347888888888788877777663211 0 000 0123799 9999999999999999999988 9999998877
Q ss_pred CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCcch
Q 023490 150 GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 150 ~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l 216 (281)
+-+ .-+|.-.||.+ ...+|+++.+|+++.++-.. +++. +.+..||+|+||..++-|..
T Consensus 242 PI~-AleA~MdGf~V-----~~m~~Aa~~gDifiT~TGnk---dVi~~eh~~~MkDgaIl~N~GHFd~ 300 (420)
T COG0499 242 PIR-ALEAAMDGFRV-----MTMEEAAKTGDIFVTATGNK---DVIRKEHFEKMKDGAILANAGHFDV 300 (420)
T ss_pred chH-HHHHhhcCcEE-----EEhHHhhhcCCEEEEccCCc---CccCHHHHHhccCCeEEecccccce
Confidence 544 34577789984 58999999999999998864 4676 78889999999988776764
No 134
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.11 E-value=2.9e-05 Score=74.10 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=80.5
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc----------ccHHHHHHCCceecC---------CCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----------~s~~~A~~~G~~~~~---------~t~~~ 171 (281)
+++++|||.|.||..+|..+... |++|.+.+.+.+ ++.+...+.|...++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 58999999999999999998887 899999987632 111222222311110 00112
Q ss_pred HHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEecc
Q 023490 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmP 237 (281)
. +.+++||+|+=+++-.... +++.++-.+.+|++|| +..+++.+..+.+ ....|+ +++..|+
T Consensus 77 ~-~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~-~~~rpe--r~iG~HF 141 (307)
T COG1250 77 L-AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAE-ALKRPE--RFIGLHF 141 (307)
T ss_pred h-hHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHH-HhCCch--hEEEEec
Confidence 2 2789999999999986654 3888999999999999 5788888877765 223333 3555554
No 135
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.10 E-value=2.3e-05 Score=81.99 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=76.1
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G~~~~~---------~t 168 (281)
..+++|+|||.|.||..+|..+... |++|++++...+. .+. ..+.|...+. ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~~-l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQKA-LDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999988 9999999876431 111 1122211000 00
Q ss_pred cCCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 169 ~~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
..+. +.+++||+||=++|..-.. +++.++-+.++|++||. ..+++.+..+..
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~ 438 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK 438 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 2344 5589999999999986654 38889999999999884 678888877665
No 136
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.10 E-value=3.2e-05 Score=80.98 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=81.1
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-----------HHCC-------------ceec
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAG-------------FTEE 165 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-----------~~~G-------------~~~~ 165 (281)
.+++|+|||.|.||..+|..+... |++|++.+...+. .+.+ .+.| +..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~~-l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~- 383 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQHS-LDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP- 383 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-
Confidence 468999999999999999999998 9999998876431 1111 1111 111
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccC
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPn 238 (281)
..+. +.+++||+||=++|..-.. +++.++-+.++|++||. ..+++.+..+.. ....| -+|+..|+=
T Consensus 384 ---~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~-~~~~p--~r~ig~Hff 452 (714)
T TIGR02437 384 ---TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK-ALKRP--ENFCGMHFF 452 (714)
T ss_pred ---eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh-hcCCc--ccEEEEecC
Confidence 2244 4579999999999987654 38889999999999984 678888877765 22222 245555543
No 137
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.09 E-value=2.6e-05 Score=81.39 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=74.1
Q ss_pred CCcEEEEEccCchHHHHHHHHH-hhhhhccCCcEEEEEecCCcccHHHH-----------HHCCce-ecC--------CC
Q 023490 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFT-EEN--------GT 168 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Viig~r~~~~s~~~A-----------~~~G~~-~~~--------~t 168 (281)
.+++|+|||.|.||..+|..+. .. |++|++++...+ ..+.+ .+.|.. .+. ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999876 47 999999887642 11111 111110 000 01
Q ss_pred cCCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 169 ~~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
..+. +.+++||+||=++|..... +++.++-+..++++||. ..+++.+..+.+
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~ 430 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA 430 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH
Confidence 2344 5689999999999987664 38889999999999884 678888877765
No 138
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=1.1e-05 Score=76.11 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=61.9
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |+|+|||. |.||..+|..|.+. |+.|.++..+ ..++.+.+++||+|+.
T Consensus 154 i~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s~-------------------t~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 154 VELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHSR-------------------TRNLAEVARKADILVV 207 (284)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 46999 99999999 99999999999998 9999887221 1267789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++.... +++ .++|+|+++++++
T Consensus 208 avg~~~~---v~~--~~ik~GavVIDvg 230 (284)
T PRK14179 208 AIGRGHF---VTK--EFVKEGAVVIDVG 230 (284)
T ss_pred ecCcccc---CCH--HHccCCcEEEEec
Confidence 9998653 332 2399999999864
No 139
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.05 E-value=1.9e-05 Score=63.92 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=59.7
Q ss_pred EEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEE-ecCCcccHHHHHHCC-ceecCCCcCCHHhh-cCcCCEEEEccCC
Q 023490 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (281)
Q Consensus 113 tIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig-~r~~~~s~~~A~~~G-~~~~~~t~~~~~E~-l~~ADVViLavP~ 188 (281)
+|+||| .|.+|..++..+... .++++... .++.+.....+...+ +........+.++. ..++|+|++++|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 589999 599999999999874 15555433 333211111122221 11000000111111 2589999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
..+.+++..+.+.+++|+++++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 98888777666778999999998875
No 140
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.05 E-value=3.9e-05 Score=80.10 Aligned_cols=104 Identities=14% Similarity=0.214 Sum_probs=74.6
Q ss_pred CCcEEEEEccCchHHHHHHHHH-hhhhhccCCcEEEEEecCCcccHHHH-----------HHCCce-ecC--------CC
Q 023490 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFT-EEN--------GT 168 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Viig~r~~~~s~~~A-----------~~~G~~-~~~--------~t 168 (281)
.+++|+|||.|.||..+|..+. .. |++|.+++...+ ..+.+ .+.|.. .+. ..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 380 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINPQ-GINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG 380 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE
Confidence 4689999999999999999887 77 999999887532 11111 111211 000 00
Q ss_pred cCCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 169 ~~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
..+. +.+++||+||=++|..... +++.++-++++|++||. ..+++.+..+.+
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~ 435 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA 435 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH
Confidence 2244 5689999999999987654 38889999999999985 678888877765
No 141
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.04 E-value=1.1e-05 Score=76.32 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=62.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhcCcCCEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~---G--~~~~~~t~~~~~E~l~~ADVV 182 (281)
.. ++|+|||.|.||..+++.+.... + .+|.+++|..++..+.+.+. | +.. ..+.++++++||+|
T Consensus 124 ~~-~~v~iiG~G~~a~~~~~al~~~~-----~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIV 193 (314)
T PRK06141 124 DA-SRLLVVGTGRLASLLALAHASVR-----PIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADII 193 (314)
T ss_pred CC-ceEEEECCcHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEE
Confidence 45 99999999999999998776520 4 57889998765544444442 3 332 45788999999999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
+.++|.. ..++.. ..++||++|..
T Consensus 194 i~aT~s~--~pvl~~--~~l~~g~~i~~ 217 (314)
T PRK06141 194 SCATLST--EPLVRG--EWLKPGTHLDL 217 (314)
T ss_pred EEeeCCC--CCEecH--HHcCCCCEEEe
Confidence 9888865 234442 45799995543
No 142
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.03 E-value=2.8e-05 Score=81.64 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=75.0
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCCcee-c------C--CCc
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTE-E------N--GTL 169 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G~~~-~------~--~t~ 169 (281)
-+++|+|||.|.||..+|..+... |++|++++...+ ..+. ..+.|... + + ...
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 406 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPA-GLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT 406 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence 458999999999999999999988 999998886642 1111 11112110 0 0 002
Q ss_pred CCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 170 ~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
.+. +.+++||+||=++|..... +++.++-+.++|++||. ..+++.+..+..
T Consensus 407 ~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~ 460 (737)
T TIGR02441 407 LDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA 460 (737)
T ss_pred CCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 344 4689999999999987664 38889999999999984 678888877765
No 143
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.00 E-value=1.8e-05 Score=75.23 Aligned_cols=95 Identities=17% Similarity=0.085 Sum_probs=65.3
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~---~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
.+++||||.|.||+.+++.+.... ...+|.+++|..++..+.+. +.|+.. ....+.+|++++||+|+++||
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~ 201 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTP 201 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecC
Confidence 489999999999999998886641 12478888887554333332 345321 115689999999999999998
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
... .++. ...+|||++|..++...
T Consensus 202 s~~--P~~~--~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 202 SRK--PVVK--ADWVSEGTHINAIGADA 225 (325)
T ss_pred CCC--cEec--HHHcCCCCEEEecCCCC
Confidence 642 3443 23579999987665443
No 144
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=2.2e-05 Score=77.33 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=73.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G----~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
..||+||+|.||+.+|.|+.+. |+.|.+++|..++..+.-++.+ +.. ..+..++-..++.=--|+|.+.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~-~~sieefV~~Le~PRkI~lMVk 76 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP-AYSIEEFVASLEKPRKILLMVK 76 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc-cCcHHHHHHHhcCCceEEEEEe
Confidence 5799999999999999999999 9999999999876665544443 221 1112234445777888999998
Q ss_pred Ch-hHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 188 DA-AQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~-~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
-. +...++++++|+|.+|.|||+.+-
T Consensus 77 AG~~VD~~I~~L~p~Le~gDIiIDGGN 103 (473)
T COG0362 77 AGTPVDAVIEQLLPLLEKGDIIIDGGN 103 (473)
T ss_pred cCCcHHHHHHHHHhhcCCCCEEEeCCC
Confidence 84 344589999999999999998765
No 145
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.97 E-value=1.6e-05 Score=78.03 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=66.7
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+.| ++++|||.|.||..+++.|+.. |. +|++++|...+..+.+.+.|.... ...+..+.+.++|+||.+
T Consensus 179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISS 249 (423)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEEC
Confidence 4789 9999999999999999999988 87 788888876554456666653210 123566788999999999
Q ss_pred cCChhH---HHHHHHHHhcC-CCCcEEEEeC
Q 023490 186 ISDAAQ---ADNYEKIFSCM-KPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~---~~vl~ei~~~m-KpgaILi~aa 212 (281)
++.... .+.+......= ..+.++++.+
T Consensus 250 T~s~~~~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 250 TGAPHPIIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred CCCCCcEEcHHHHHHHHhhccCCCeEEEEeC
Confidence 986442 22343322111 2345677765
No 146
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.96 E-value=9.1e-05 Score=69.56 Aligned_cols=103 Identities=21% Similarity=0.250 Sum_probs=72.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-HCCceec-CCC--c----CCHHhhcCcCCEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT--L----GDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-~~G~~~~-~~t--~----~~~~E~l~~ADVVi 183 (281)
|+|+|||.|.||.-+|-.|.+. |.+|.+..|..+. .+.-+ +.|+... ++. . ....+.....|+|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQR-LAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechHH-HHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 7899999999999999999998 9999888875422 22222 2344321 111 0 01112346789999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEE-EEeCCcch-hhhhh
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQS 221 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l-~~l~~ 221 (281)
++++-....+.++.+.+++.+++.| .+--|+.. +.+..
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~ 115 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAA 115 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH
Confidence 9999988888889999999998865 46678774 34544
No 147
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=2.9e-05 Score=73.37 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=62.2
Q ss_pred cccCCCcEEEEEccCch-HHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~m-G~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||.|++ |+.++..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 154 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 154 IPLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVA 207 (285)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEE
Confidence 36899 99999999988 99999999998 9998876432 2367789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-. .+++. .++|||++|++++
T Consensus 208 avG~~---~~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 208 AVGKR---NVLTA--DMVKPGATVIDVG 230 (285)
T ss_pred cCCCc---CccCH--HHcCCCCEEEEcc
Confidence 99943 35553 6799999998764
No 148
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.89 E-value=5.4e-05 Score=74.35 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=58.4
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
..+.| ++++|||.|.||..+++.|+.. | .+|++++|...+..+.+.+.|.... ...+..+.+.++|+||.
T Consensus 176 ~~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~ 246 (417)
T TIGR01035 176 GSLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVIS 246 (417)
T ss_pred CCccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEE
Confidence 35889 9999999999999999999988 8 5788888876544445666554210 12356788999999999
Q ss_pred ccCChh
Q 023490 185 LISDAA 190 (281)
Q Consensus 185 avP~~~ 190 (281)
+++...
T Consensus 247 aT~s~~ 252 (417)
T TIGR01035 247 STGAPH 252 (417)
T ss_pred CCCCCC
Confidence 998644
No 149
>PLN00203 glutamyl-tRNA reductase
Probab=97.87 E-value=3.1e-05 Score=78.45 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=55.9
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
+|.+ ++|+|||.|.||..+++.|... |. +|++++|...+..+.+.+. +....-..+.+..+++.++|+||.
T Consensus 263 ~l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIs 335 (519)
T PLN00203 263 SHAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFT 335 (519)
T ss_pred CCCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEE
Confidence 3788 9999999999999999999988 86 6888988865544555544 221100013466788999999999
Q ss_pred ccCC
Q 023490 185 LISD 188 (281)
Q Consensus 185 avP~ 188 (281)
+|+-
T Consensus 336 AT~s 339 (519)
T PLN00203 336 STSS 339 (519)
T ss_pred ccCC
Confidence 9875
No 150
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.86 E-value=0.00013 Score=67.17 Aligned_cols=98 Identities=15% Similarity=0.261 Sum_probs=64.3
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
+++|+|||+ |.||+.+++.+... .++++....+...+........++.. ..+++++++++|+|+.++|+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence 478999998 99999999988764 15776554443322121112334432 468899998999999999988
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEeCCcchhhhh
Q 023490 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQ 220 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpga-ILi~aaG~~l~~l~ 220 (281)
...+++...+.. |. +++-..|++.++.+
T Consensus 72 ~~~~~~~~al~~---G~~vvigttG~s~~~~~ 100 (257)
T PRK00048 72 ATLENLEFALEH---GKPLVIGTTGFTEEQLA 100 (257)
T ss_pred HHHHHHHHHHHc---CCCEEEECCCCCHHHHH
Confidence 776666654443 44 44445687765543
No 151
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.86 E-value=3.9e-05 Score=72.41 Aligned_cols=94 Identities=21% Similarity=0.164 Sum_probs=67.9
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhcCcCCEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~---G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
... ++++|||.|.||+.+++.+.... +. +|.+++|..++..+.+.+. ++... ..+.+++++++|+|+
T Consensus 123 ~~~-~~v~IiGaG~qa~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~~~~~~av~~aDiVi 193 (304)
T PRK07340 123 APP-GDLLLIGTGVQARAHLEAFAAGL-----PVRRVWVRGRTAASAAAFCAHARALGPTAE---PLDGEAIPEAVDLVV 193 (304)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHhC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---ECCHHHHhhcCCEEE
Confidence 355 99999999999999999997631 53 6888888765544444443 33221 347889999999999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
.+||... .+++. .+|||++|..++...
T Consensus 194 taT~s~~--Pl~~~---~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 194 TATTSRT--PVYPE---AARAGRLVVAVGAFT 220 (304)
T ss_pred EccCCCC--ceeCc---cCCCCCEEEecCCCC
Confidence 9999754 35543 479999887666544
No 152
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.85 E-value=5.2e-05 Score=66.26 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=60.3
Q ss_pred cccCCCcEEEEEccCch-HHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~m-G~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||.|.| |..+|+.|... |.+|.+.+|.. .++.+.++++|+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 56999 99999999997 88899999998 88888887641 156688999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-.. ++..- .++++.+|++.+
T Consensus 94 at~~~~---ii~~~--~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKGD--MVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecHH--HccCCeEEEEcc
Confidence 999754 45421 467788888654
No 153
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.85 E-value=0.0002 Score=67.88 Aligned_cols=107 Identities=19% Similarity=0.272 Sum_probs=78.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCc--------CCHHhhcCcCCEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--------GDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~--------~~~~E~l~~ADVVi 183 (281)
|+|.|+|.|.||.-++..|... |.+|.+..|... .+.-++.|...++... ....+.+..+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~~~--~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRSRR--LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecHHH--HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999999 877777776532 4455566765432111 12235677899999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEE-EEeCCcch-hhhhhcccCCCCC
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSIGLDFPKN 229 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l-~~l~~~~~~~~~~ 229 (281)
++++-.+..+.++.+.+.+++++.| ++--|+.. +.+++ .++..
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~ 117 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKE 117 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcc
Confidence 9999999999999999999999865 46677663 33444 44554
No 154
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.81 E-value=0.00017 Score=66.82 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=56.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEE-EecCCcccHHHHHHC--CceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAA--GFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vii-g~r~~~~s~~~A~~~--G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|++|||||+|+||+.+++.+... .++++.. +.+... ..+..... ++.. +.+++++-.+.|+|+.++|
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~-~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHS-IDAVRRALGEAVRV----VSSVDALPQRPDLVVECAG 70 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCC-HHHHhhhhccCCee----eCCHHHhccCCCEEEECCC
Confidence 57999999999999999999875 1345433 333221 11111212 3332 4578777566999999999
Q ss_pred ChhHHHHHHHHHhcCCCCc-EEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNS-ILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpga-ILi~aaG 213 (281)
+..+.++..+.+. .|. +++...|
T Consensus 71 ~~~~~e~~~~aL~---aGk~Vvi~s~~ 94 (265)
T PRK13303 71 HAALKEHVVPILK---AGIDCAVISVG 94 (265)
T ss_pred HHHHHHHHHHHHH---cCCCEEEeChH
Confidence 9877666665544 344 4444444
No 155
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.79 E-value=0.00016 Score=72.58 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=61.8
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-----------------C--ceecCCCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------------G--FTEENGTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-----------------G--~~~~~~t~~~ 171 (281)
+|+|+|||+|.+|..+|..|... |.|++|+.++.... ..+...+. + +.. ..+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~gvD~~~~-~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~----t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVVVVDISVP-RIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF----STD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEEEEECCHH-HHHHHHcCCCccCCCCHHHHHHHhhcCCEEE----EcC
Confidence 58999999999999999998876 33577876765422 12221100 1 111 235
Q ss_pred HHhhcCcCCEEEEccCC-h--------------hHHHHHHHHHhcCCCCcEEEEe
Q 023490 172 IYETISGSDLVLLLISD-A--------------AQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~-~--------------~~~~vl~ei~~~mKpgaILi~a 211 (281)
.++++++||++|+|+|. . ......+++.++++++++|++-
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ 126 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 67889999999999862 1 1123555788999999988743
No 156
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.74 E-value=0.0001 Score=69.99 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=65.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++++|||.|.||+.+++.+.... +. +|.+++|..++..+.+.+ .++.. ..+.+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR-----DIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC-----CccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 89999999999999998876431 44 677888875544443332 24321 11467899999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
|... .++. ..+|+|+.|+-++...
T Consensus 201 ~s~~--p~i~---~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 201 NAKT--PVFS---EKLKKGVHINAVGSFM 224 (325)
T ss_pred CCCC--cchH---HhcCCCcEEEecCCCC
Confidence 9652 3443 5789999987665543
No 157
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.74 E-value=0.00012 Score=74.15 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=69.0
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee------cC-----CCc--CC---
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------EN-----GTL--GD--- 171 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~------~~-----~t~--~~--- 171 (281)
+.+ .++.|||.|.+|...++.++.. |.+|++.+++.. ..+.+++.|... ++ ++. .+
T Consensus 162 vp~-akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~~~-rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPP-AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTRPE-VKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCeEEeccccccccccccceeecCHHH
Confidence 456 8999999999999999999998 988888777654 466777777653 00 000 00
Q ss_pred -------HHhhcCcCCEEEEcc--CChhHHHHHH-HHHhcCCCCcEEEEe
Q 023490 172 -------IYETISGSDLVLLLI--SDAAQADNYE-KIFSCMKPNSILGLS 211 (281)
Q Consensus 172 -------~~E~l~~ADVViLav--P~~~~~~vl~-ei~~~mKpgaILi~a 211 (281)
+.|.++++|+||.++ |......++. +....||||++|+|.
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 345678999999977 3322334454 788999999998865
No 158
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.73 E-value=0.00011 Score=69.46 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=62.9
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||.|. +|..+|+.|... |..|.++.++. .++.+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEE
Confidence 47999 9999999998 999999999988 99998887541 156788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+++-.. ++.+ .++|+|++|++.+-
T Consensus 208 Avg~p~---~i~~--~~vk~gavVIDvGi 231 (286)
T PRK14175 208 AVGKPG---LVTK--DVVKEGAVIIDVGN 231 (286)
T ss_pred CCCCCc---ccCH--HHcCCCcEEEEcCC
Confidence 998743 4443 25799999988654
No 159
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.71 E-value=8.2e-05 Score=70.31 Aligned_cols=94 Identities=13% Similarity=0.152 Sum_probs=67.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+++||||.|.||..+++.+.... .+ +|.+++|..++..+.+.+ .|+..+ ...+.+|++++||||+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~--~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVY-----NPKRIRVYSRNFDHARAFAERFSKEFGVDIR--PVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHHhcCCcEE--EeCCHHHHHhcCCEEEEe
Confidence 489999999999999999988751 44 788898886554443333 243221 146899999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
|+-.. .+++ ...+|||+.|..++...
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAGSNY 215 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecCCCC
Confidence 99643 4554 13578999887666544
No 160
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.71 E-value=8.7e-05 Score=71.72 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~---~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+.++++|||.|.|+..+++.+..-. .+ +|.+++|..++..+.+++ .++..+ ...+.+|++++||+|+.+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRIV--ACRSVAEAVEGADIITTV 200 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcEE--EeCCHHHHHhcCCEEEEe
Confidence 3489999999999999998887752 33 788888876543333322 233211 146899999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
|+......+++. ..+|||+.|..++.+.
T Consensus 201 T~S~~~~Pvl~~--~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 201 TADKTNATILTD--DMVEPGMHINAVGGDC 228 (346)
T ss_pred cCCCCCCceecH--HHcCCCcEEEecCCCC
Confidence 975432245552 3579999887665544
No 161
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.70 E-value=0.00047 Score=63.92 Aligned_cols=96 Identities=11% Similarity=0.160 Sum_probs=61.1
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEec-CCcccH--HHHHH-----CCceecCCCcCCHHhhcCcCCE
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSF--AEARA-----AGFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r-~~~~s~--~~A~~-----~G~~~~~~t~~~~~E~l~~ADV 181 (281)
|++|+||| +|.||+.+++.+... .++++....+ .++... ..+.. .|+.. +.+++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 46899999 699999999999864 1677665444 322111 11121 23432 4578887667999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCc-EEEEeCCcchhh
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGH 218 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpga-ILi~aaG~~l~~ 218 (281)
|+.++|+....+++...+.+ |. +|+-..|++.++
T Consensus 72 VIdfT~p~~~~~~~~~al~~---g~~vVigttg~~~e~ 106 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALEH---GVRLVVGTTGFSEED 106 (266)
T ss_pred EEECCChHHHHHHHHHHHHC---CCCEEEECCCCCHHH
Confidence 99999998777766654433 33 444455766433
No 162
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.68 E-value=0.00016 Score=71.62 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=71.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
..|++ +++.|||.|.||.-+|+.|... |. +|+|.+|..++..+.|.+.|... -.+.++.+.+.++|+||.
T Consensus 174 ~~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVis 244 (414)
T COG0373 174 GSLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVIS 244 (414)
T ss_pred ccccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEE
Confidence 45899 9999999999999999999998 85 78999999888788899988542 224567788999999999
Q ss_pred ccCChh--HH-HHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAA--QA-DNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~--~~-~vl~ei~~~mKpgaILi~aa 212 (281)
+|.-.. .. ..+++....-+. -+++|.+
T Consensus 245 sTsa~~~ii~~~~ve~a~~~r~~-~livDia 274 (414)
T COG0373 245 STSAPHPIITREMVERALKIRKR-LLIVDIA 274 (414)
T ss_pred ecCCCccccCHHHHHHHHhcccC-eEEEEec
Confidence 976432 22 245544443333 3445443
No 163
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00017 Score=69.44 Aligned_cols=95 Identities=21% Similarity=0.253 Sum_probs=68.9
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~---~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+.++++|||.|.|+..+++.++.-. ++ +|.+++|..+...+.+. +.+.. ......+.++++++||+|+.+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~-----~~~~I~i~~r~~~~~e~~a~~l~~~~~~-~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVR-----DIREIRVYSRDPEAAEAFAARLRKRGGE-AVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhC-----CccEEEEEcCCHHHHHHHHHHHHhhcCc-cceeccCHHHHhhcCCEEEEe
Confidence 4589999999999999999998862 44 78889888654444332 22221 011256889999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
||... .++. ...++||++|..+++.
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 99876 4444 2357899999877753
No 164
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.61 E-value=0.00014 Score=63.46 Aligned_cols=98 Identities=20% Similarity=0.165 Sum_probs=63.0
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC----Cc--eecC-CCcCCHHhhcC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEEN-GTLGDIYETIS 177 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~----G~--~~~~-~t~~~~~E~l~ 177 (281)
.+++| +++.|+|. |.+|+.+++.|... |.+|++..|...+..+.+.+. +. ...+ ....+..+.++
T Consensus 24 ~~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (194)
T cd01078 24 KDLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK 96 (194)
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh
Confidence 46889 99999995 99999999999988 888888887644322222221 11 1100 00123347889
Q ss_pred cCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 178 ~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++|+|+.++|..... ........+++.++++..
T Consensus 97 ~~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 97 GADVVFAAGAAGVEL--LEKLAWAPKPLAVAADVN 129 (194)
T ss_pred cCCEEEECCCCCcee--chhhhcccCceeEEEEcc
Confidence 999999999976641 112222345677777653
No 165
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.60 E-value=0.0002 Score=58.29 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=57.1
Q ss_pred EEEEEc-cCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCC----ceecCCCcC-CHHhhcCcCCEEEEc
Q 023490 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAG----FTEENGTLG-DIYETISGSDLVLLL 185 (281)
Q Consensus 113 tIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G----~~~~~~t~~-~~~E~l~~ADVViLa 185 (281)
||+||| .|.+|+.+.+.|.+. ..++++ +..++.+.-.......+ +.. -... ...+.+.++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 699999 999999999999985 245543 33443311111222211 110 0011 123456999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+|.....++..++ +++|..|++.++
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSG 98 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSS
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCH
Confidence 9998777777765 567888998776
No 166
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.58 E-value=0.00064 Score=65.36 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=61.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH-HHHHHCCceec-----------CC---CcCCHHhh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NG---TLGDIYET 175 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~-~~A~~~G~~~~-----------~~---t~~~~~E~ 175 (281)
|.+|||+|+|.||+.+++.+... .+++++...+...... ..+++.|+... +. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 46899999999999999988764 2677765555332211 12333332100 00 02357788
Q ss_pred cCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 176 l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+.++|+|+.++|.....+...... +.|..+++.+|
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~~~ 110 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELYE---KAGVKAIFQGG 110 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHHH---HCCCEEEEcCC
Confidence 889999999999987766665433 34666776665
No 167
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.57 E-value=0.00024 Score=58.50 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=60.3
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcc-----cHHHH---HHCCceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-----SFAEA---RAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~-----s~~~A---~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
++|+|+|+ |.||+.+++.+.+. .++++....++... ..... ...|+.. ..+++++++++|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 58999999 99999999999984 17876655444320 00000 1233443 46899999999999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCc-EEEEeCCcchhhh
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHL 219 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpga-ILi~aaG~~l~~l 219 (281)
|-.+-+....+.++..+.+ +. +|+=..|++-.++
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~ 106 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDEQI 106 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHHHH
Confidence 9999666666666655554 44 4555789875443
No 168
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=0.00038 Score=68.68 Aligned_cols=131 Identities=23% Similarity=0.284 Sum_probs=79.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc------------------ccHHHHHHCC-ceecCCCcCCH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS------------------RSFAEARAAG-FTEENGTLGDI 172 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~------------------~s~~~A~~~G-~~~~~~t~~~~ 172 (281)
.+|||||+|-+|-.+|..+... |++|+-.+-... ...+++.+.| +.. ..++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra----Ttd~ 79 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA----TTDP 79 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE----ecCh
Confidence 7899999999999999999888 998764442210 1122345555 332 3345
Q ss_pred HhhcCcCCEEEEccCCh--h--HH--H-HH---HHHHhcCCCCcEEEEe----CCcch----hhhhh-cccCCCCCceEE
Q 023490 173 YETISGSDLVLLLISDA--A--QA--D-NY---EKIFSCMKPNSILGLS----HGFLL----GHLQS-IGLDFPKNIGVI 233 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~--~--~~--~-vl---~ei~~~mKpgaILi~a----aG~~l----~~l~~-~~~~~~~~i~VI 233 (281)
++ ++.||++++|+|.. . +. . +. +.+.+.|++|++|++= .|-+- -.++. .|+.++.|+.+.
T Consensus 80 ~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~la 158 (436)
T COG0677 80 EE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLA 158 (436)
T ss_pred hh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEe
Confidence 44 66999999998852 1 11 1 22 3689999999998753 33221 12333 567777665443
Q ss_pred ----EeccCCCChhhHHhhhhCccccC
Q 023490 234 ----AVCPKGMGPSVRRLYVQGKEING 256 (281)
Q Consensus 234 ----rvmPntpg~~vr~~y~~g~~~~~ 256 (281)
|++| |.-++++=.--|-|.|
T Consensus 159 ysPERv~P---G~~~~el~~~~kVIgG 182 (436)
T COG0677 159 YSPERVLP---GNVLKELVNNPKVIGG 182 (436)
T ss_pred eCccccCC---CchhhhhhcCCceeec
Confidence 5555 4444444333333333
No 169
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.55 E-value=0.00015 Score=71.57 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=59.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G-~~~~~~t~~~~~E~l~~ADVVi 183 (281)
..+.| +++.|||.|.||..+++.|... |. ++.+.+|...+..+.+.+.+ ... -.+.++.+.+.++|+||
T Consensus 177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIII 247 (414)
T ss_pred cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEE
Confidence 46889 9999999999999999999988 85 68899998665556666654 221 01345678899999999
Q ss_pred EccCChh
Q 023490 184 LLISDAA 190 (281)
Q Consensus 184 LavP~~~ 190 (281)
.+|+...
T Consensus 248 ~aT~a~~ 254 (414)
T PRK13940 248 AAVNVLE 254 (414)
T ss_pred ECcCCCC
Confidence 9998643
No 170
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.54 E-value=0.00024 Score=67.54 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=64.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~----G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++++|||.|.||..+++.+.... +. +|.+++|..++..+.+.+. |+... ...+.+++++++|+|+.+|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~-----~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~--~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR-----DIRSARIWARDSAKAEALALQLSSLLGIDVT--AATDPRAAMSGADIIVTTT 202 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-----CccEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhccCCEEEEec
Confidence 89999999999999999997531 54 6888888765544444432 44321 1457889999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
|... .++.. ..+++|++|...+
T Consensus 203 ~s~~--p~i~~--~~l~~g~~i~~vg 224 (326)
T TIGR02992 203 PSET--PILHA--EWLEPGQHVTAMG 224 (326)
T ss_pred CCCC--cEecH--HHcCCCcEEEeeC
Confidence 9743 34441 2478999876443
No 171
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.54 E-value=8e-05 Score=70.55 Aligned_cols=97 Identities=22% Similarity=0.285 Sum_probs=56.2
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~---~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+.++++|||.|.||..+++.+.+.+ +. +|.+++|..++..+.+.+ .++..+ ...+.++++++||+|+.+
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~--~~~~~~~av~~aDii~ta 199 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPVV--AVDSAEEAVRGADIIVTA 199 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCEE--EESSHHHHHTTSSEEEE-
T ss_pred CCceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccce--eccchhhhcccCCEEEEc
Confidence 3489999999999999999998752 44 788888875433333322 233321 256899999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
||-.....+++ ...++||++|+.++...
T Consensus 200 T~s~~~~P~~~--~~~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 200 TPSTTPAPVFD--AEWLKPGTHINAIGSYT 227 (313)
T ss_dssp ---SSEEESB---GGGS-TT-EEEE-S-SS
T ss_pred cCCCCCCcccc--HHHcCCCcEEEEecCCC
Confidence 99765323444 23689999887666544
No 172
>PRK06046 alanine dehydrogenase; Validated
Probab=97.51 E-value=0.00026 Score=67.36 Aligned_cols=93 Identities=19% Similarity=0.190 Sum_probs=62.3
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.++|||||.|.||+.+++.+.... +. +|.+++|..++..+.+.+ .++..+ ...+.+++++ +|+|+++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVF-----DLEEVRVYDRTKSSAEKFVERMSSVVGCDVT--VAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhC-----CceEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhh-CCEEEEe
Confidence 489999999999999999987541 44 456677665433333332 243211 1457888887 9999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
||... .+++ ...+|||++|..++...
T Consensus 201 Tps~~--P~~~--~~~l~~g~hV~~iGs~~ 226 (326)
T PRK06046 201 TPSRK--PVVK--AEWIKEGTHINAIGADA 226 (326)
T ss_pred cCCCC--cEec--HHHcCCCCEEEecCCCC
Confidence 99753 4454 12468999887665543
No 173
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.47 E-value=0.00046 Score=64.02 Aligned_cols=87 Identities=22% Similarity=0.234 Sum_probs=61.1
Q ss_pred CcEEEEEccCchH-HHHHHHHHhhhhhccCC--cE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEE
Q 023490 111 INQIGVIGWGSQG-PAQAQNLRDSLAEAKSD--IV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG~G~mG-~AiA~~Lra~~~~~~~G--~~-Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViL 184 (281)
+.+|||||+|.++ ...+..+++. + +. |-++++..++..+.+++.|+.. .+.+.++++++ .|+|++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~I 73 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYI 73 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEE
Confidence 3789999999666 4588888776 4 33 3344566555556678888751 26789999987 599999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi 209 (281)
++|+..+.++..+. ++.|..|+
T Consensus 74 atp~~~H~e~~~~A---L~aGkhVl 95 (342)
T COG0673 74 ATPNALHAELALAA---LEAGKHVL 95 (342)
T ss_pred cCCChhhHHHHHHH---HhcCCEEE
Confidence 99999888766433 33455443
No 174
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.46 E-value=0.00073 Score=62.48 Aligned_cols=91 Identities=26% Similarity=0.319 Sum_probs=61.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|||||+|.||+.+.+.+++- . -+++ +.++++..++..+.+...+... ..+++|.+++.|+|+=|..+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~--~--~~~e~v~v~D~~~ek~~~~~~~~~~~~----~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG--R--VDFELVAVYDRDEEKAKELEASVGRRC----VSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC--C--cceeEEEEecCCHHHHHHHHhhcCCCc----cccHHHHhhccceeeeeCCHHH
Confidence 4799999999999999999862 0 0244 4556665444333333444332 4689999999999999999888
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeCC
Q 023490 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (281)
Q Consensus 191 ~~~vl~ei~~~mKpga-ILi~aaG 213 (281)
..+...+++.. |. +|+++-|
T Consensus 73 v~e~~~~~L~~---g~d~iV~SVG 93 (255)
T COG1712 73 VREYVPKILKA---GIDVIVMSVG 93 (255)
T ss_pred HHHHhHHHHhc---CCCEEEEech
Confidence 77766665543 33 4555544
No 175
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.46 E-value=0.0004 Score=65.40 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=60.0
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||.|. .|++++..|... |..|.++.++. .++.+.++++|+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~t-------------------~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSRT-------------------QNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCCc-------------------hhHHHHhccCCEEEE
Confidence 47899 9999999998 999999999988 88888887631 145677899999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-.. .+.. +.+++|++++++.
T Consensus 209 AtG~~~---~v~~--~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIKK--DWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCCH--HHcCCCCEEEEEE
Confidence 996322 3442 3589999998764
No 176
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.45 E-value=0.00034 Score=66.67 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=67.0
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHH---HHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A---~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+.++++|||.|.||..+++.+.... .. +|.+++|..++..+.+ ++.++..+ ...+.+|++++||||+.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVT-----DCRQLWVWGRSETALEEYRQYAQALGFAVN--TTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHhcCCcEE--EECCHHHHhcCCCEEEEe
Confidence 3489999999999999999887641 33 7888988865543333 22244321 145789999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
|+-.. .+++ ...+|||++|.-++.+.
T Consensus 200 T~s~~--P~~~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 200 TPSRE--PLLQ--AEDIQPGTHITAVGADS 225 (315)
T ss_pred cCCCC--ceeC--HHHcCCCcEEEecCCCC
Confidence 98543 4554 13578999987665544
No 177
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.44 E-value=0.00065 Score=65.37 Aligned_cols=76 Identities=13% Similarity=0.262 Sum_probs=51.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEE-EecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vii-g~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
.+|+|||+|+||+.+++.+.+. .+++++. +++.... ......++.. ..+.++++.+.|+|++|+|...
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~--~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~t 72 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE--TLDTETPVYA----VADDEKHLDDVDVLILCMGSAT 72 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH--HHhhcCCccc----cCCHHHhccCCCEEEEcCCCcc
Confidence 6899999999999999999765 2677654 3443212 1122234332 3467788899999999999876
Q ss_pred HHHHHHHH
Q 023490 191 QADNYEKI 198 (281)
Q Consensus 191 ~~~vl~ei 198 (281)
+.+...++
T Consensus 73 h~~~~~~~ 80 (324)
T TIGR01921 73 DIPEQAPY 80 (324)
T ss_pred CHHHHHHH
Confidence 65444433
No 178
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.42 E-value=0.0006 Score=64.54 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=61.5
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||.|+ .|..++..|... |..|.++.++ ..++.+.+++||+|+.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999988 8888887643 1267889999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++.. .++|+|++|++++
T Consensus 209 avG~p~---~v~~--~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPG---FIPG--EWIKPGAIVIDVG 231 (285)
T ss_pred cCCCcc---cccH--HHcCCCcEEEEcc
Confidence 995433 3332 5689999999865
No 179
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.41 E-value=0.00092 Score=51.42 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=50.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
..+++ ++++|+|.|.+|..+++.+.+. +. +|.++++ |+++-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 44788 9999999999999999999987 53 5555543 99999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+++..... .++....++++.+|++.
T Consensus 61 ~~~~~~~~--~~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPV--LEEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCc--hHHHHHhcCCCCEEEec
Confidence 99874431 23356778899888754
No 180
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.41 E-value=0.0015 Score=61.00 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=44.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH--CCceec--C---CCcCCHHhhcCcCCEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--N---GTLGDIYETISGSDLV 182 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~--~G~~~~--~---~t~~~~~E~l~~ADVV 182 (281)
|+||+|||.|.||..+|..+... |. +|.+.+...+.....+.+ ...... . ....+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 58999999999999999998876 54 888888754322221211 110000 0 001344 568999999
Q ss_pred EEcc
Q 023490 183 LLLI 186 (281)
Q Consensus 183 iLav 186 (281)
+++.
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
No 181
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.40 E-value=0.0023 Score=50.69 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=61.4
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---h-hcCcCCEEEEccCCh
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLISDA 189 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~---E-~l~~ADVViLavP~~ 189 (281)
|-|+|+|.+|..+++.|++. +.+|++.++.. +..+.+.+.|+..-.+...+.+ + -++++|.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~d~-~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDRDP-ERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEESSH-HHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEECCc-HHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 57999999999999999998 87888777664 3466777778654333333433 2 378999999999987
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEeCC
Q 023490 190 AQADNYEKIFSCMKPNS-ILGLSHG 213 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpga-ILi~aaG 213 (281)
...-.+-..+..+.|.. ++..+..
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 65544444444444443 4444443
No 182
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.40 E-value=0.00092 Score=67.83 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=84.2
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec--CCC-------------cCC-
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGD- 171 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~--~~t-------------~~~- 171 (281)
..| .++.|||.|.+|...++.++.. |.+|++.+++. ...+.+++.|.... +.. ..+
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~D~~~-~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAFDTRP-EVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence 467 9999999999999999999998 99877777664 45678888886510 000 001
Q ss_pred -------HHhhcCcCCEEEEccCChh--HHHHH-HHHHhcCCCCcEEEEeC---Ccchh-hhhhcccCCC-CCceEEEec
Q 023490 172 -------IYETISGSDLVLLLISDAA--QADNY-EKIFSCMKPNSILGLSH---GFLLG-HLQSIGLDFP-KNIGVIAVC 236 (281)
Q Consensus 172 -------~~E~l~~ADVViLavP~~~--~~~vl-~ei~~~mKpgaILi~aa---G~~l~-~l~~~~~~~~-~~i~VIrvm 236 (281)
+.+.++++|+||-++-... ...++ ++.+..||||.+|++.+ |-.+. .... ...+. .+++++.+
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~-~~v~~~~gVti~Gv- 312 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPG-EVVVTDNGVTIIGY- 312 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCc-cceEeECCEEEEEe-
Confidence 0122367999999886422 33454 78999999999887653 21111 1100 01222 45555554
Q ss_pred cCCCC---hhhHHhhhhC
Q 023490 237 PKGMG---PSVRRLYVQG 251 (281)
Q Consensus 237 Pntpg---~~vr~~y~~g 251 (281)
+|.|+ .+..++|..+
T Consensus 313 ~n~P~~~p~~As~lla~~ 330 (509)
T PRK09424 313 TDLPSRLPTQSSQLYGTN 330 (509)
T ss_pred CCCchhHHHHHHHHHHhC
Confidence 35553 3455677775
No 183
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.40 E-value=0.00029 Score=64.90 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=60.0
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC---CceecCCCcCCHHh-hcCcCCEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~---G~~~~~~t~~~~~E-~l~~ADVVi 183 (281)
.++ +++.|+|.|.+|++++..|.+. |.+|.+.+|...+..+.+.+. +... ..+.++ .+.++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 568 9999999999999999999988 889988888754433333332 2111 123333 346899999
Q ss_pred EccCChhHHH----HHHHHHhcCCCCcEEEEe
Q 023490 184 LLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 184 LavP~~~~~~----vl~ei~~~mKpgaILi~a 211 (281)
.++|...... .+. ...++++.+++++
T Consensus 184 natp~gm~~~~~~~~~~--~~~l~~~~~v~D~ 213 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVP--AEKLKEGMVVYDM 213 (270)
T ss_pred ECCCCCCCCCCCCCCCC--HHHcCCCCEEEEe
Confidence 9999742111 111 2346677777655
No 184
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.39 E-value=0.00085 Score=58.46 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=54.1
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..++..|... |..|.+...+. .++++.+++||+|+.
T Consensus 32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~T-------------------~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSKT-------------------KNLQEITRRADIVVS 85 (160)
T ss_dssp -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TTS-------------------SSHHHHHTTSSEEEE
T ss_pred CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCCC-------------------CcccceeeeccEEee
Confidence 46999 999999988 5999999999999 99888765431 267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++.-.. +++ ..++|||++||+++-
T Consensus 86 a~G~~~---~i~--~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 86 AVGKPN---LIK--ADWIKPGAVVIDVGI 109 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE--C
T ss_pred eecccc---ccc--cccccCCcEEEecCC
Confidence 998643 344 346899999987653
No 185
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.36 E-value=0.0012 Score=59.07 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=58.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||.|.+|...++.|... |.+|++..+...+........+ +...... -.++.+.++|+||.
T Consensus 6 l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~--~~~~~l~~adlVia 76 (202)
T PRK06718 6 IDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQKE--FEPSDIVDAFLVIA 76 (202)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEecC--CChhhcCCceEEEE
Confidence 67999 9999999999999999999998 9888887765333222222333 3221111 11345889999999
Q ss_pred ccCChhHHHHHHH
Q 023490 185 LISDAAQADNYEK 197 (281)
Q Consensus 185 avP~~~~~~vl~e 197 (281)
++.+.+....+.+
T Consensus 77 aT~d~elN~~i~~ 89 (202)
T PRK06718 77 ATNDPRVNEQVKE 89 (202)
T ss_pred cCCCHHHHHHHHH
Confidence 9999877665543
No 186
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.34 E-value=0.00052 Score=68.74 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=53.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+++| ++++|||.|.+|.+++..+.+. |.+|.+++|...+..+.+.+.+... ....+.. .+.++|+||.+
T Consensus 328 ~~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~--~~~~~~~-~l~~~DiVIna 397 (477)
T PRK09310 328 IPLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKA--FPLESLP-ELHRIDIIINC 397 (477)
T ss_pred CCcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccce--echhHhc-ccCCCCEEEEc
Confidence 45788 9999999999999999999998 9998888876443333333332211 0011222 26789999999
Q ss_pred cCChh
Q 023490 186 ISDAA 190 (281)
Q Consensus 186 vP~~~ 190 (281)
+|...
T Consensus 398 tP~g~ 402 (477)
T PRK09310 398 LPPSV 402 (477)
T ss_pred CCCCC
Confidence 99864
No 187
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.34 E-value=0.00079 Score=57.35 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=59.9
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |+|.|||-+ ..|..++..|.+. |..|.+.+++. .++++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~t-------------------~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWKT-------------------IQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCCC-------------------cCHHHHHhhCCEEEE
Confidence 47999 999999955 8899999999988 99988775431 256788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
++.-.. +++ .+.+|||+++++.
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidv 99 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINC 99 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEc
Confidence 999763 455 2358999998854
No 188
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=97.34 E-value=0.00012 Score=71.48 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=77.1
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
...+.| .++|+||+|..|+++++.+++| |+.|+.++..-..-.+.+.-.+.+ .++.|++-++|-+.+
T Consensus 173 ~~~~~G-~~~g~~g~gr~g~av~~~A~af------g~~~ifydp~~~~g~~~~lg~~rV------ytlqd~~~~sd~~S~ 239 (435)
T KOG0067|consen 173 LARIRG-PTLGLIGFGRTGQAVALRAKAF------GFVVIFYDPYLIDGIDKSLGLQRV------YTLQDLLYQSDCVSL 239 (435)
T ss_pred cccccc-cceeeeccccccceehhhhhcc------cceeeeecchhhhhhhhhccccee------cccchhhhhccceee
Confidence 456788 9999999999999999999999 998877766543333333333333 368899999999999
Q ss_pred ccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcchh
Q 023490 185 LISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLLG 217 (281)
Q Consensus 185 avP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l~ 217 (281)
+|..+++.+ +++ --...|+.|+.++ -+.|..++
T Consensus 240 hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvd 275 (435)
T KOG0067|consen 240 HCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVD 275 (435)
T ss_pred ecccCcccccccccccceeecccceEeeecccccCC
Confidence 999999876 666 4667899999876 56676653
No 189
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.34 E-value=0.00038 Score=67.02 Aligned_cols=111 Identities=20% Similarity=0.121 Sum_probs=74.8
Q ss_pred hhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec--CCCcCC
Q 023490 94 VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGD 171 (281)
Q Consensus 94 vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~--~~t~~~ 171 (281)
.++|+=-+--+...... -++.|||.|-.|..-|+-+... |-+|.+.+.+..+-...-...+...+ -.+...
T Consensus 152 ~~GG~GvllgGvpGV~~-~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~ 224 (371)
T COG0686 152 TNGGKGVLLGGVPGVLP-AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSN 224 (371)
T ss_pred ccCCceeEecCCCCCCC-ccEEEECCccccchHHHHHhcc------CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHH
Confidence 55555444333333444 6899999999999999988766 88999998874432222222332210 112345
Q ss_pred HHhhcCcCCEEEEc--cCChhHHHHH-HHHHhcCCCCcEEEEe
Q 023490 172 IYETISGSDLVLLL--ISDAAQADNY-EKIFSCMKPNSILGLS 211 (281)
Q Consensus 172 ~~E~l~~ADVViLa--vP~~~~~~vl-~ei~~~mKpgaILi~a 211 (281)
++|.+.++|+||-+ +|-.....+. ++..++||||++|+|+
T Consensus 225 iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 225 IEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred HHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 78999999999964 5666666655 4889999999998754
No 190
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.33 E-value=0.0007 Score=66.63 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=57.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHC--Cc---eecCCCcCCHHhhcCcCCEEEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA--GF---TEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~--G~---~~~~~t~~~~~E~l~~ADVViL 184 (281)
|++|.|||+|.+|+.+|..|.+. | .+|.+++|..++..+.+... .+ ..+......+.+++++.|+||.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEE
Confidence 58999999999999999999888 6 89999999855433322221 11 1110112246689999999999
Q ss_pred ccCChhHHHHHH
Q 023490 185 LISDAAQADNYE 196 (281)
Q Consensus 185 avP~~~~~~vl~ 196 (281)
+.|+.....+++
T Consensus 75 ~~p~~~~~~i~k 86 (389)
T COG1748 75 AAPPFVDLTILK 86 (389)
T ss_pred eCCchhhHHHHH
Confidence 999987766554
No 191
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.33 E-value=0.00059 Score=64.94 Aligned_cols=89 Identities=21% Similarity=0.258 Sum_probs=62.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++++|||.|.+|++++..+.... +. +|.+++|..++..+.+.+ .|+.. ....+.++++.++|+|+.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~-----~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVR-----PIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 89999999999999999888630 43 688888875544444432 24432 11457889999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
|... .++.. ..+++|+.|+..
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~v 226 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTAM 226 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEee
Confidence 8743 34542 236788876543
No 192
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.29 E-value=0.00062 Score=63.13 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=55.3
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCc-CCHHhhcCcCCEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVL 183 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~-~~~~E~l~~ADVVi 183 (281)
.++.| +++.|||.|.+|++++..|... | .+|.+.+|..++..+.+.+.+... .-.. .+..+.+.++|+||
T Consensus 119 ~~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivI 190 (278)
T PRK00258 119 VDLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLII 190 (278)
T ss_pred CCCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEE
Confidence 35788 9999999999999999999988 8 589999987654444444332110 0001 13357788999999
Q ss_pred EccCChh
Q 023490 184 LLISDAA 190 (281)
Q Consensus 184 LavP~~~ 190 (281)
.++|...
T Consensus 191 naTp~g~ 197 (278)
T PRK00258 191 NATSAGM 197 (278)
T ss_pred ECCcCCC
Confidence 9999754
No 193
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.28 E-value=0.0029 Score=59.84 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=60.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEE-EecCCc-ccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vii-g~r~~~-~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP 187 (281)
.+|||||.|+||..++..+... .++++.. .++..+ ...+.+++.|+.. +..+.+++++ +.|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 4799999999999998777754 1455543 333322 1235677788753 1447788875 5788999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
...+.++..+.. +.|..+++-.
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdek 95 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLT 95 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECC
Confidence 988877665443 3477665543
No 194
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.28 E-value=0.00052 Score=67.05 Aligned_cols=94 Identities=21% Similarity=0.214 Sum_probs=63.4
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHC-----Cce-ecCCCcCCHHhhcCcCCEE
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GFT-EENGTLGDIYETISGSDLV 182 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~-----G~~-~~~~t~~~~~E~l~~ADVV 182 (281)
+.++++|||.|.|+..+++.+.... .++ +|.+++|..++..+.+.+. |+. .+ ...+.+|++++||||
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~--~~~s~~eav~~ADIV 227 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVE--VVDSIEEVVRGSDIV 227 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEE--EeCCHHHHHcCCCEE
Confidence 4589999999999999999988741 013 7888888865433333222 221 10 146899999999999
Q ss_pred EEccCChh----HHHHHHHHHhcCCCCcEEEEe
Q 023490 183 LLLISDAA----QADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 183 iLavP~~~----~~~vl~ei~~~mKpgaILi~a 211 (281)
+.+|+... ...+++ ...+|||++|+..
T Consensus 228 vtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~i 258 (379)
T PRK06199 228 TYCNSGETGDPSTYPYVK--REWVKPGAFLLMP 258 (379)
T ss_pred EEccCCCCCCCCcCcEec--HHHcCCCcEEecC
Confidence 99997533 123554 2357899887643
No 195
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.27 E-value=0.0017 Score=62.28 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=58.8
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-ceec-CCCcCCHHh-hcCcCCEEEEcc
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIYE-TISGSDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~~-~~t~~~~~E-~l~~ADVViLav 186 (281)
|++|+|||. |.+|+.+++.|.+. .+++++...++.+.....+...+ +... +..+.+.++ ..+++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 479999996 99999999999865 14565443333221111222111 1100 001222222 557899999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCC-cch
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHG-FLL 216 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG-~~l 216 (281)
|...+.++..+..+ .|..|++.++ |.+
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~~fR~ 104 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSADFRL 104 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCcccCC
Confidence 99877777766543 5888887654 544
No 196
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.26 E-value=0.0021 Score=60.84 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=44.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH---CC----c--eecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AG----F--TEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~---~G----~--~~~~~t~~~~~E~l~~ADV 181 (281)
++|+|||.|.||..+|..+... |. +|++.+.........+.. .+ . .. ....+.++ +++||+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i--~~t~d~~~-~~~aDi 72 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKV--TGTNNYAD-TANSDI 72 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEE--EecCCHHH-hCCCCE
Confidence 6899999999999999999887 65 788777653321111110 00 0 11 01246666 899999
Q ss_pred EEEccC
Q 023490 182 VLLLIS 187 (281)
Q Consensus 182 ViLavP 187 (281)
||++.+
T Consensus 73 VIitag 78 (305)
T TIGR01763 73 VVITAG 78 (305)
T ss_pred EEEcCC
Confidence 999888
No 197
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=97.24 E-value=0.0017 Score=61.40 Aligned_cols=130 Identities=17% Similarity=0.216 Sum_probs=94.0
Q ss_pred CcEEEEEccCch--------------------HHHHHHHHHhhhhhccCCcEEEEEecCC----cccHHHHHHCCceecC
Q 023490 111 INQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEEN 166 (281)
Q Consensus 111 ~ktIGIIG~G~m--------------------G~AiA~~Lra~~~~~~~G~~Viig~r~~----~~s~~~A~~~G~~~~~ 166 (281)
++||.|.|.||+ |..+|-.+... |++|+.++... ...++.-+..|+..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v-- 72 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV-- 72 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE--
Confidence 367777777776 55666666666 99999887653 23356677889886
Q ss_pred CCcCCHHhhcCcCCEEEEccCChhHH-HHHHHHHhcCCCCcEEEEeCCcc---h-hhhhhcccCC-CCCceEEEeccC-C
Q 023490 167 GTLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFL---L-GHLQSIGLDF-PKNIGVIAVCPK-G 239 (281)
Q Consensus 167 ~t~~~~~E~l~~ADVViLavP~~~~~-~vl~ei~~~mKpgaILi~aaG~~---l-~~l~~~~~~~-~~~i~VIrvmPn-t 239 (281)
..|-.|+++.+++.+|-+|-...+ .+.+++++++..|++|.-.+-+. + ..++ ..+.. ++|+-|-..||- .
T Consensus 73 --v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE-~~Lr~kR~dVGvssmHPAgv 149 (340)
T COG4007 73 --VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLE-GELRTKREDVGVSSMHPAGV 149 (340)
T ss_pred --ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhh-hhhcCchhhcCccccCCCCC
Confidence 456778999999999999998655 57779999999999997444333 2 2343 23333 367777788885 4
Q ss_pred CChhhHHhhhhC
Q 023490 240 MGPSVRRLYVQG 251 (281)
Q Consensus 240 pg~~vr~~y~~g 251 (281)
||.+-.+.|+-+
T Consensus 150 PGtp~h~~yvia 161 (340)
T COG4007 150 PGTPQHGHYVIA 161 (340)
T ss_pred CCCCCCceEEEe
Confidence 888888888876
No 198
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.24 E-value=0.0023 Score=62.06 Aligned_cols=84 Identities=18% Similarity=0.157 Sum_probs=56.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-CCceecCCCcC---CHHhh-cCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG---DIYET-ISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~G~~~~~~t~~---~~~E~-l~~ADVViLav 186 (281)
|+|.|+|+|.+|..+++.|++. |++|++.++.... .+..++ .|+..-.+... .++++ +.++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~~~-~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDEER-LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCHHH-HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 9998887775433 333333 44332111122 23445 78999999999
Q ss_pred CChhHHHHHHHHHhcC
Q 023490 187 SDAAQADNYEKIFSCM 202 (281)
Q Consensus 187 P~~~~~~vl~ei~~~m 202 (281)
+.......+......+
T Consensus 74 ~~~~~n~~~~~~~r~~ 89 (453)
T PRK09496 74 DSDETNMVACQIAKSL 89 (453)
T ss_pred CChHHHHHHHHHHHHh
Confidence 9866544443333333
No 199
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.22 E-value=0.002 Score=58.49 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=64.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc---EEEEEecCC----ccc-------HHHHHHCCceecCCCcCC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~---~Viig~r~~----~~s-------~~~A~~~G~~~~~~t~~~ 171 (281)
..+++ +++.|+|.|.+|.++|..|.+. |. ++.+.+|++ .+. .+.+++.+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 46889 9999999999999999999987 86 488888873 221 22333332111 0126
Q ss_pred HHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+.+.++++|+||-++|+.... .+....|.++.+|.+..
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFALA 128 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEEeC
Confidence 778889999999999853322 25566677777766433
No 200
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.21 E-value=0.00092 Score=62.61 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=55.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhcCcC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGS 179 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G-----~~~~~~t~~~~~E~l~~A 179 (281)
..+.+ +++.|||.|-+|++++..|... |. +|.+.+|...+..+.+.+.+ ... ....+..+.++++
T Consensus 123 ~~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~--~~~~~~~~~~~~a 193 (284)
T PRK12549 123 PDASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAARA--TAGSDLAAALAAA 193 (284)
T ss_pred cCccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeEE--EeccchHhhhCCC
Confidence 35788 9999999999999999999988 87 78889887655444444321 111 0123445678899
Q ss_pred CEEEEccCCh
Q 023490 180 DLVLLLISDA 189 (281)
Q Consensus 180 DVViLavP~~ 189 (281)
|+||.++|..
T Consensus 194 DiVInaTp~G 203 (284)
T PRK12549 194 DGLVHATPTG 203 (284)
T ss_pred CEEEECCcCC
Confidence 9999999964
No 201
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.19 E-value=0.0033 Score=60.05 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=62.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcC-----cCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--~s~~~A~~~G~~~~~~t~~~~~E~l~-----~ADVViL 184 (281)
.+|||||.|+||..++..+... .++++....+.+. ...+.+++.|+.. ++.+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 6799999999999988887764 1456553333322 2335677888763 1357888884 5899999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++|...+.++..+.. +.|..+++...
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCc
Confidence 999987776665543 45777776543
No 202
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0027 Score=57.52 Aligned_cols=80 Identities=21% Similarity=0.153 Sum_probs=56.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH-HHHHCCceecCCCcCC---HHhh-cCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~-~A~~~G~~~~~~t~~~---~~E~-l~~ADVViLav 186 (281)
|++.|||+|..|..+|+.|.+. |++|++.++..+...+ .+.+.+...-.+...+ +.++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 9999888877544333 1222433221112222 4455 88999999999
Q ss_pred CChhHHHHHHH
Q 023490 187 SDAAQADNYEK 197 (281)
Q Consensus 187 P~~~~~~vl~e 197 (281)
......-++-.
T Consensus 75 ~~d~~N~i~~~ 85 (225)
T COG0569 75 GNDEVNSVLAL 85 (225)
T ss_pred CCCHHHHHHHH
Confidence 99776655543
No 203
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.15 E-value=0.00048 Score=59.28 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=65.1
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCce---ec----------------
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---EE---------------- 165 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~---~~---------------- 165 (281)
+..+.. .+|.|+|.|+.|..-++.+... |.+|++.+.... ..+.....+.. .+
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDERPE-RLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESSHH-HHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCCHH-HHHhhhcccCceEEEcccccccccccchhhhh
Confidence 456667 8999999999999999999998 999888876532 23333344322 10
Q ss_pred ---CCCcCCHHhhcCcCCEEEE--ccCChhHHHHHH-HHHhcCCCCcEEEEe
Q 023490 166 ---NGTLGDIYETISGSDLVLL--LISDAAQADNYE-KIFSCMKPNSILGLS 211 (281)
Q Consensus 166 ---~~t~~~~~E~l~~ADVViL--avP~~~~~~vl~-ei~~~mKpgaILi~a 211 (281)
..+...+.+.++.+|+||. +.|......++. +.+..|||+.+|+|.
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDi 138 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDI 138 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEET
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEE
Confidence 0001136688999999996 445555666665 888999999999875
No 204
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.10 E-value=0.0032 Score=50.12 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=51.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
-+++| +++.|||.|.+|..=++.|.+. |.+|.+..+.. +. .+..+... ...+++.+.++|+|+++
T Consensus 3 l~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~----~~-~~~~i~~~---~~~~~~~l~~~~lV~~a 67 (103)
T PF13241_consen 3 LDLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI----EF-SEGLIQLI---RREFEEDLDGADLVFAA 67 (103)
T ss_dssp E--TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE----HH-HHTSCEEE---ESS-GGGCTTESEEEE-
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch----hh-hhhHHHHH---hhhHHHHHhhheEEEec
Confidence 46899 9999999999999999999998 99998887653 11 12223221 22455779999999999
Q ss_pred cCChhHHHHHH
Q 023490 186 ISDAAQADNYE 196 (281)
Q Consensus 186 vP~~~~~~vl~ 196 (281)
+.+....+.+.
T Consensus 68 t~d~~~n~~i~ 78 (103)
T PF13241_consen 68 TDDPELNEAIY 78 (103)
T ss_dssp SS-HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99877665444
No 205
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.10 E-value=0.0022 Score=55.16 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=58.2
Q ss_pred ccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcC
Q 023490 101 FKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (281)
Q Consensus 101 f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~~~~t~~~~~E~l~~A 179 (281)
|++. .+|+| ++|.|||.|.+|...++.|.+. |.+|.+....-. . +..+.+ +....+.+. ++-++++
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~~~--~-~l~~l~~i~~~~~~~~--~~dl~~a 71 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPEIC--K-EMKELPYITWKQKTFS--NDDIKDA 71 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCccC--H-HHHhccCcEEEecccC--hhcCCCc
Confidence 4433 68999 9999999999999999999998 998877753321 2 222222 222111111 2347899
Q ss_pred CEEEEccCChhHHHHHHHHH
Q 023490 180 DLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~ 199 (281)
|+|+.++.+.+....+.+..
T Consensus 72 ~lViaaT~d~e~N~~i~~~a 91 (157)
T PRK06719 72 HLIYAATNQHAVNMMVKQAA 91 (157)
T ss_pred eEEEECCCCHHHHHHHHHHH
Confidence 99999999887766555443
No 206
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.09 E-value=0.0037 Score=58.78 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=46.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC--cEEEEEecCCcccHHHHHHC-------C--ceecCCCcCCHHhhcCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAA-------G--FTEENGTLGDIYETISGSD 180 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G--~~Viig~r~~~~s~~~A~~~-------G--~~~~~~t~~~~~E~l~~AD 180 (281)
++|+|||.|.+|.++|..|... | .+|.++++..+.....+.+. + ... .....+.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i----~~~~~~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI----KAGDYSDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE----EcCCHHHhCCCC
Confidence 5899999999999999999887 7 47888887654433333321 1 111 112335589999
Q ss_pred EEEEccCC
Q 023490 181 LVLLLISD 188 (281)
Q Consensus 181 VViLavP~ 188 (281)
+|++++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99998875
No 207
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.08 E-value=0.0026 Score=61.46 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=57.8
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHHHHCCceec-----------C---CCcCCHHhhcCc
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-----------N---GTLGDIYETISG 178 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A~~~G~~~~-----------~---~t~~~~~E~l~~ 178 (281)
|||+|+|.||+.+++.+... .+++|+...+...+. ...+...|+... + ....+++|++++
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998754 167776555543221 133443332210 0 002468899999
Q ss_pred CCEEEEccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~mKpgaILi 209 (281)
+|+|+.|+|........ +.+..++++++|+
T Consensus 76 vDiVve~Tp~~~~~~na-~~~~~~GakaVl~ 105 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNK-PLYEKAGVKAIFQ 105 (333)
T ss_pred CCEEEECCCCCCChhhH-HHHHhCCcCEEEE
Confidence 99999999986653322 4555677777664
No 208
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.08 E-value=0.0017 Score=58.58 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=63.6
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCC-cCC----HHhhcCcC
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT-LGD----IYETISGS 179 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t-~~~----~~E~l~~A 179 (281)
.+++| |++.|||-+ ..|..+|..|... |..|.+++.+.............. .+ ..+ +.|.+++|
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~hs---~t~~~~~~~~l~~~~~~A 127 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIRHE---KHHVTDEEAMTLDCLSQS 127 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccccc---cccccchhhHHHHHhhhC
Confidence 47999 999999976 7899999999988 999988864322110000000000 00 012 67899999
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|+||.+++-... .+. .+++|+|++||+++-
T Consensus 128 DIVIsAvG~~~~--~i~--~d~ik~GavVIDVGi 157 (197)
T cd01079 128 DVVITGVPSPNY--KVP--TELLKDGAICINFAS 157 (197)
T ss_pred CEEEEccCCCCC--ccC--HHHcCCCcEEEEcCC
Confidence 999999997542 133 245889999998764
No 209
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.07 E-value=0.0041 Score=58.52 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=49.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~-l~~ADVViLavP~~~ 190 (281)
++|||||+|.||+.+++.|..-. ..++++....++.....+.... .... +.+++++ ..+.|+|+=|.++..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~~~-~~~~----~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPALAG-RVAL----LDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHhhc-cCcc----cCCHHHHhhcCCCEEEECCCHHH
Confidence 68999999999999999987530 0035554434443211111111 1222 5678886 678888888888776
Q ss_pred HHHHHHHHH
Q 023490 191 QADNYEKIF 199 (281)
Q Consensus 191 ~~~vl~ei~ 199 (281)
..+.-..++
T Consensus 75 v~e~~~~iL 83 (267)
T PRK13301 75 IAEHAEGCL 83 (267)
T ss_pred HHHHHHHHH
Confidence 655554443
No 210
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.07 E-value=0.0047 Score=58.76 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=45.8
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHH--C-----C--ceecCCCcCCHHhhcC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA--A-----G--FTEENGTLGDIYETIS 177 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~--~-----G--~~~~~~t~~~~~E~l~ 177 (281)
.+. +||+|||.|+||.+++..+... | .++.+.+...+.....+.+ . + ...+ ...+.+ .++
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~--~~~d~~-~l~ 72 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL--GTNNYE-DIK 72 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEEE--eCCCHH-HhC
Confidence 356 8999999999999999998887 6 4777777654322211111 1 1 1110 123444 789
Q ss_pred cCCEEEEcc
Q 023490 178 GSDLVLLLI 186 (281)
Q Consensus 178 ~ADVViLav 186 (281)
+||+|+++.
T Consensus 73 ~ADiVVita 81 (319)
T PTZ00117 73 DSDVVVITA 81 (319)
T ss_pred CCCEEEECC
Confidence 999999998
No 211
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.07 E-value=0.0017 Score=61.28 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=60.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| +++.|||.+ ..|+.+|..|... |..|.++.++. .++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~t-------------------~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSKT-------------------ENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecCh-------------------hHHHHHHhhCCEEEE
Confidence 47999 999999999 9999999999988 88888776431 257788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-. .++.+ .++|||++|++++
T Consensus 202 Avgk~---~lv~~--~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFITP--DMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccCH--HHcCCCcEEEEee
Confidence 99743 34542 1269999998765
No 212
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.05 E-value=0.0042 Score=60.40 Aligned_cols=105 Identities=18% Similarity=0.261 Sum_probs=72.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhc-cCCcEEEEEecCCccc---HHHHHH-----------CCcee-cC-CCcCCHHh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKGSRS---FAEARA-----------AGFTE-EN-GTLGDIYE 174 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~-~~G~~Viig~r~~~~s---~~~A~~-----------~G~~~-~~-~t~~~~~E 174 (281)
++|+|||.||=|.++|+.+...-.+. -|..+|.++.+...-. ....+- .|+.. ++ -...|+.|
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 89999999999999999987753222 2234566554332110 011110 00000 00 01357899
Q ss_pred hcCcCCEEEEccCChhHHHHHHHHHhcCCCCcE-EEEeCCcch
Q 023490 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (281)
Q Consensus 175 ~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaI-Li~aaG~~l 216 (281)
++++||+++..+|.+-...+.+++..++||++. |++..||..
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 999999999999999999999999999999996 668888875
No 213
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.04 E-value=0.004 Score=59.92 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=58.6
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCc-eec-CCCc--CCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGF-TEE-NGTL--GDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~-~~~-~~t~--~~~~E~l~~ADVViLa 185 (281)
++|+|||. |.+|+.+++.|... .+++++ +..++.+.........+. ... +..+ .+.++.++++|+|++|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 58999997 99999999999865 234655 333332111111111210 000 0001 2456666789999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCC-cch
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHG-FLL 216 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG-~~l 216 (281)
+|.....++..++.. .|..||+.++ |.+
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~~fR~ 104 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSADFRL 104 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCChhhhc
Confidence 999877777766543 5788887655 443
No 214
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.04 E-value=0.0077 Score=57.26 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhhhhhccCCcEEEEEecCCcc------cHH-----------HHHHCCceecC---------CCcC--CHH
Q 023490 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SFA-----------EARAAGFTEEN---------GTLG--DIY 173 (281)
Q Consensus 122 mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~------s~~-----------~A~~~G~~~~~---------~t~~--~~~ 173 (281)
||..+|..+... |++|++++...+. ..+ ...+.|...+. .... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 789999999888 9999999887531 011 11222221000 0011 256
Q ss_pred hhcCcCCEEEEccCChhHHH--HHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 174 ETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 174 E~l~~ADVViLavP~~~~~~--vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
+++++||+||-++|.....+ ++.++.+.++|+++|. -.+++.+..+..
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~ 125 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR 125 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh
Confidence 88999999999999977654 7779999999999884 556667766654
No 215
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.04 E-value=0.0032 Score=53.11 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=45.5
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEEE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-------~G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
+||+|||. |++|.++|..|... +..-++.+.++........+.+ ..... .......+.+++||+|+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~----~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDivv 74 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ----GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADIVV 74 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT----TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC----CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccEEE
Confidence 68999999 99999999999987 2233777777763322222221 11110 00225568899999999
Q ss_pred Ecc
Q 023490 184 LLI 186 (281)
Q Consensus 184 Lav 186 (281)
+..
T Consensus 75 ita 77 (141)
T PF00056_consen 75 ITA 77 (141)
T ss_dssp ETT
T ss_pred Eec
Confidence 976
No 216
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.02 E-value=0.0018 Score=61.28 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=60.4
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-| ..|..+|..|... |..|.++.... .++.+.+++||+|+.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~t-------------------~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHILT-------------------KDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCCc-------------------HHHHHHHHhCCEEEE
Confidence 47899 999999999 9999999999988 99888774321 156688999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|||++|++++
T Consensus 207 AvG~p~---~i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPD---LIK--ASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCC---cCC--HHHcCCCcEEEEee
Confidence 997544 344 23569999998765
No 217
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.0011 Score=64.87 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=70.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-HHHC-CceecCCCcCCHHhh---cCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAA-GFTEENGTLGDIYET---ISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-A~~~-G~~~~~~t~~~~~E~---l~~ADVViLav 186 (281)
..||.||++.||+.++.|+.+. |+.|.+++|..++..+. +.+. |-..- ...+++|. ++.--+|+|.+
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~--ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKII--GAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCccc--CCCCHHHHHHhcCCCcEEEEEe
Confidence 5699999999999999999999 99999999987654432 2222 21110 13466665 66778999999
Q ss_pred CChhHHH-HHHHHHhcCCCCcEEEEeCC
Q 023490 187 SDAAQAD-NYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 187 P~~~~~~-vl~ei~~~mKpgaILi~aaG 213 (281)
+...-.+ +|+++.++|.+|.+||+-+-
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGGN 106 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGGN 106 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCCc
Confidence 9865554 88899999999999997543
No 218
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.93 E-value=0.002 Score=60.13 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=54.7
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhcCcCCEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLV 182 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~---~~~~E~l~~ADVV 182 (281)
+++| +++.|||.|-+|++++..|... |. +|.+.+|..++..+.+.+.+....-... .+..+.+.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 5788 9999999999999999999988 87 6889998765555555443211000001 1234567889999
Q ss_pred EEccCChh
Q 023490 183 LLLISDAA 190 (281)
Q Consensus 183 iLavP~~~ 190 (281)
|-++|...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999753
No 219
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.92 E-value=0.006 Score=57.62 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=45.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC--cEEEEEecCCcccHHHHHHC--Cceec---CCCcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAA--GFTEE---NGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G--~~Viig~r~~~~s~~~A~~~--G~~~~---~~t~~~~~E~l~~ADVViL 184 (281)
|+|+|||.|.+|.++|..|... | .+|.+.++...+....+... ..... .-...+. +.+++||+|++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 5899999999999999999988 7 47777777643222222211 11000 0001233 56899999999
Q ss_pred ccCC
Q 023490 185 LISD 188 (281)
Q Consensus 185 avP~ 188 (281)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9885
No 220
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.92 E-value=0.0042 Score=58.94 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=60.7
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||.++ .|+.+|..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999988 8888877632 2267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++--.. ++. ..++|+|++|++++
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDvG 236 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDVG 236 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEec
Confidence 766432 443 23789999998765
No 221
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.89 E-value=0.0025 Score=61.72 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=63.2
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHh-hhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra-~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
.+|.| +++.|+|. |.||..+++.|.. . | .++++.+|...+..+.+.+.+.. ...++++.+.++|+|
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~~------gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiV 219 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAKT------GVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIV 219 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhhC------CCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEE
Confidence 47999 99999998 8999999999974 3 4 37777777644333334443211 134788999999999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+.++..... -+++. ..++++.+++|.+
T Consensus 220 v~~ts~~~~-~~I~~--~~l~~~~~viDiA 246 (340)
T PRK14982 220 VWVASMPKG-VEIDP--ETLKKPCLMIDGG 246 (340)
T ss_pred EECCcCCcC-CcCCH--HHhCCCeEEEEec
Confidence 988865332 12331 2447888888664
No 222
>PRK11579 putative oxidoreductase; Provisional
Probab=96.87 E-value=0.0061 Score=57.80 Aligned_cols=84 Identities=10% Similarity=0.147 Sum_probs=53.7
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcC--cCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~--~ADVViLavP 187 (281)
.+|||||+|.||.. .+..+... .++++....+.+.+ +.+.+. +.. .+.+.+|+++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~--~~~~~~~~~~----~~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDAT--KVKADWPTVT----VVSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHH--HHHhhCCCCc----eeCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999984 56666554 15666543333322 112233 222 2568999996 5799999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEE
Q 023490 188 DAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi 209 (281)
+..+.++..+.+ +.|..|+
T Consensus 74 ~~~H~~~~~~al---~aGkhVl 92 (346)
T PRK11579 74 NDTHFPLAKAAL---EAGKHVV 92 (346)
T ss_pred cHHHHHHHHHHH---HCCCeEE
Confidence 988777665543 3355443
No 223
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.86 E-value=0.0063 Score=61.64 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=60.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---h-hcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~---E-~l~~ADVViLavP 187 (281)
..+-|+|+|.+|+.+++.|++. |+++++.+.+. +..+.+++.|+..-.+...+.+ + -++++|.++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~------g~~vvvId~d~-~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA------GIPLVVIETSR-TRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC------CCCEEEEECCH-HHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 3789999999999999999999 99988777654 4456677777643223333432 1 2679999999999
Q ss_pred ChhHHH-HHHHHHhcCCCCcEE
Q 023490 188 DAAQAD-NYEKIFSCMKPNSIL 208 (281)
Q Consensus 188 ~~~~~~-vl~ei~~~mKpgaIL 208 (281)
+..... +...... +.|+..+
T Consensus 491 ~~~~~~~iv~~~~~-~~~~~~i 511 (558)
T PRK10669 491 NGYEAGEIVASARE-KRPDIEI 511 (558)
T ss_pred ChHHHHHHHHHHHH-HCCCCeE
Confidence 876544 3333333 3444433
No 224
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.84 E-value=0.0048 Score=50.47 Aligned_cols=85 Identities=16% Similarity=0.145 Sum_probs=57.8
Q ss_pred cEEEEEc----cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG----~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|+|+||| -+..|.-+.++|++. |++|+-.+.+... -.|... +.++.|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 688999999999998 9987655544321 135543 6688884489999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+....++++++... ..+.+++..+.
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~ 89 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGA 89 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcch
Confidence 99999999987654 34455555553
No 225
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.83 E-value=0.0063 Score=62.57 Aligned_cols=94 Identities=14% Similarity=0.208 Sum_probs=64.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---h-hcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~---E-~l~~ADVViLavP 187 (281)
.++-|+|+|.+|+.+++.|++. |+++++.+.+ .+..+.+++.|...-.|...+.+ + -+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~d-~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVLERD-ISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEEECC-HHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5799999999999999999998 9988777765 44566777778543222233332 2 2789999999999
Q ss_pred ChhHHHHHHHHHhcCCCCc-EEEEeC
Q 023490 188 DAAQADNYEKIFSCMKPNS-ILGLSH 212 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpga-ILi~aa 212 (281)
+.+....+-.....+.|+. ++.-+.
T Consensus 474 d~~~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 474 EPEDTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 9776544433344455554 443333
No 226
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.83 E-value=0.011 Score=52.88 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=56.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|.| +++.|||.|.+|..-++.|.+. |.+|++.........+...+. .+....+.+. .+.+.++|+|++
T Consensus 5 l~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~--~~dl~~~~lVi~ 75 (205)
T TIGR01470 5 ANLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARCFD--ADILEGAFLVIA 75 (205)
T ss_pred EEcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC--HHHhCCcEEEEE
Confidence 57999 9999999999999999999999 999888876543333333333 3432112222 355789999999
Q ss_pred ccCChhHHH
Q 023490 185 LISDAAQAD 193 (281)
Q Consensus 185 avP~~~~~~ 193 (281)
++.+.+...
T Consensus 76 at~d~~ln~ 84 (205)
T TIGR01470 76 ATDDEELNR 84 (205)
T ss_pred CCCCHHHHH
Confidence 999875543
No 227
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.83 E-value=0.0039 Score=59.01 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=60.6
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|..+|..|... |..|.++... ..++.+.+++||+|+.
T Consensus 153 i~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 153 IDVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIV 206 (281)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 47999 999999988 8999999999988 8888776432 1256788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 207 AvGkp~---~i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 207 GVGKPN---LIT--EDMVKEGAIVIDIG 229 (281)
T ss_pred ecCccc---ccC--HHHcCCCcEEEEee
Confidence 997543 444 24689999998764
No 228
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.78 E-value=0.014 Score=56.65 Aligned_cols=94 Identities=17% Similarity=0.107 Sum_probs=59.7
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHH----hhcCcCCE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDL 181 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~--G~~~~~~t~~~~~----E~l~~ADV 181 (281)
+.. ++|.|+|+|.+|..+++.|.+. |++|++.++..+ ..+...+. ++..-.+...+.+ .-++++|.
T Consensus 229 ~~~-~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~~~-~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 229 KPV-KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERDPE-RAEELAEELPNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCE
Confidence 445 8999999999999999999998 999888876643 33333332 3321112222332 23679999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi 209 (281)
|++++++....-++..+...+.+..++.
T Consensus 301 vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 301 FIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred EEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 9999987644333334444455555554
No 229
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.76 E-value=0.005 Score=58.20 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=60.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|..++..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 154 IDIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVV 207 (278)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 36899 999999965 7899999999988 8888877543 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvG 230 (278)
T PRK14172 208 AIGRPK---FID--EEYVKEGAIVIDVG 230 (278)
T ss_pred cCCCcC---ccC--HHHcCCCcEEEEee
Confidence 998644 444 23589999999863
No 230
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.76 E-value=0.005 Score=58.38 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=61.0
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|+.++..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 155 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 155 IDVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVG 208 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999965 7899999999988 8888877533 1367788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 209 AvGk~~---~i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 209 AVGKPE---FIK--ADWISEGAVLLDAG 231 (284)
T ss_pred eCCCcC---ccC--HHHcCCCCEEEEec
Confidence 998643 344 34689999998864
No 231
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.76 E-value=0.0048 Score=58.47 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=60.7
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|..++..|... +..|.++..+ ..++.+.+++||+|+.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 153 TQIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVV 206 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999966 7899999999988 8888877432 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|+++++++
T Consensus 207 AvG~~~---~i~--~~~vk~GavVIDvG 229 (284)
T PRK14170 207 ATGLAK---FVK--KDYIKPGAIVIDVG 229 (284)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 998644 344 24689999998764
No 232
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.75 E-value=0.0055 Score=60.92 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=67.4
Q ss_pred cEEEEEcc----CchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~----G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
++|+|||. |++|..+.++|++. |+ +|...+.+.. .-.|+.. +.+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~~Vnp~~~------~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIYPVNPKAG------EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEEEECCCCC------ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999988 76 5543333321 2246653 66888988889999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+|+....+.+++... .....++++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999998888887655 45566888899986
No 233
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.74 E-value=0.0051 Score=58.23 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=60.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..+|..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 152 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 205 (282)
T PRK14169 152 IDVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVV 205 (282)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999966 7899999999988 8888877433 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++||+++
T Consensus 206 AvG~p~---~i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 206 AVGVPH---FIG--ADAVKPGAVVIDVG 228 (282)
T ss_pred ccCCcC---ccC--HHHcCCCcEEEEee
Confidence 998644 444 23689999998865
No 234
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=96.74 E-value=0.005 Score=58.77 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=60.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|+.++..|... |..|.++..+ ..++++.+++||+|+.
T Consensus 163 i~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~ 216 (299)
T PLN02516 163 IPIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIA 216 (299)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999966 6899999999988 8888877432 1267889999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-. .++. ..++|+|++|++++
T Consensus 217 AvGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 217 AAGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred cCCCc---CccC--HHHcCCCCEEEEee
Confidence 99753 3554 24689999998765
No 235
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.72 E-value=0.0055 Score=58.02 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=60.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|+.++..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 37999 999999966 7899999999988 8888877543 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++.. .++|+|++|++++
T Consensus 208 AvGkp~---~i~~--~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPN---FITA--DMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcC---cCCH--HHcCCCcEEEEec
Confidence 998644 3442 4689999999864
No 236
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.71 E-value=0.0068 Score=55.56 Aligned_cols=65 Identities=28% Similarity=0.315 Sum_probs=43.4
Q ss_pred EEEEcc-CchHHHHHHHHHhhhhhccCC----cEEEEEecCCcccHHHHHHC--------CceecCCCcCCHHhhcCcCC
Q 023490 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAA--------GFTEENGTLGDIYETISGSD 180 (281)
Q Consensus 114 IGIIG~-G~mG~AiA~~Lra~~~~~~~G----~~Viig~r~~~~s~~~A~~~--------G~~~~~~t~~~~~E~l~~AD 180 (281)
|+|||. |.+|..+|..|... | .+|.+++....+....+.+. ....+ ...+.++.+++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~--~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS--ITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE--ECCchHHHhCCCC
Confidence 689999 99999999999887 6 57877876543222111111 11111 1345678999999
Q ss_pred EEEEcc
Q 023490 181 LVLLLI 186 (281)
Q Consensus 181 VViLav 186 (281)
+|+++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999954
No 237
>PRK10206 putative oxidoreductase; Provisional
Probab=96.71 E-value=0.0074 Score=57.66 Aligned_cols=81 Identities=12% Similarity=0.157 Sum_probs=51.0
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP 187 (281)
.++||||+|.+++. .+..+.... .++++. ++++. .+..+.+.+.+... .+.+.+|+++ +.|+|++++|
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~-~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp 73 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRH-AKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTH 73 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCC-hhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 58999999998753 345443320 145665 44443 33234445554221 2568999996 5799999999
Q ss_pred ChhHHHHHHHHHh
Q 023490 188 DAAQADNYEKIFS 200 (281)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (281)
+..+.++..+.+.
T Consensus 74 ~~~H~~~~~~al~ 86 (344)
T PRK10206 74 ADSHFEYAKRALE 86 (344)
T ss_pred chHHHHHHHHHHH
Confidence 9888776665443
No 238
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.70 E-value=0.0058 Score=58.25 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=60.9
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..++..|... |..|.++..+ ..++++.+++||+|+.
T Consensus 154 i~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIs 207 (297)
T PRK14186 154 IDIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVA 207 (297)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37999 999999966 7899999999988 8888877432 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++||+++
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 208 AAGRPN---LIG--AEMVKPGAVVVDVG 230 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 998543 444 24689999998865
No 239
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.69 E-value=0.019 Score=48.34 Aligned_cols=66 Identities=27% Similarity=0.279 Sum_probs=49.2
Q ss_pred EEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEccCC
Q 023490 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (281)
Q Consensus 114 IGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViLavP~ 188 (281)
|.|+| .|.+|+.+++.|.+. |++|+...|+.++..+ ..++..-.+...+ +.++++++|.|+.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 67899 599999999999999 9999998888653222 3444322233334 45788899999999986
No 240
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.67 E-value=0.0061 Score=57.84 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=60.5
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..++..|... +..|.++..+ ..++++.+++||+|+.
T Consensus 151 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIs 204 (287)
T PRK14173 151 IPLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVV 204 (287)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37999 999999955 7899999999988 8888877533 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++||+++
T Consensus 205 AvGkp~---~i~--~~~vk~GavVIDVG 227 (287)
T PRK14173 205 AVGRPH---LIT--PEMVRPGAVVVDVG 227 (287)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 998643 444 34689999998864
No 241
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.67 E-value=0.0062 Score=57.82 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=60.5
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|+.++..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 155 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~ 208 (288)
T PRK14171 155 PNLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVA 208 (288)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 36999 999999966 7899999999988 8888877543 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-. +++. ..++|+|++||+++
T Consensus 209 AvGkp---~~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 209 AIGSP---LKLT--AEYFNPESIVIDVG 231 (288)
T ss_pred ccCCC---CccC--HHHcCCCCEEEEee
Confidence 99853 2454 24689999998764
No 242
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.66 E-value=0.012 Score=47.21 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=59.7
Q ss_pred chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HH
Q 023490 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NY 195 (281)
Q Consensus 121 ~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl 195 (281)
+-+..+++.|++. |.+|.+++..-.. ..... .++.. ..++++.++.+|+|+++++-.+... -+
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~--~~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~ 84 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDE--EEIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDW 84 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHH--HHHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccCh--HHHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence 6677889999998 9999988876432 22222 45653 4588999999999999999988776 45
Q ss_pred HHHHhcCCCCcEEEEeCCc
Q 023490 196 EKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 196 ~ei~~~mKpgaILi~aaG~ 214 (281)
+++...|+++.+|++..++
T Consensus 85 ~~~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHHHSCSSEEEEESSST
T ss_pred HHHHHhcCCCCEEEECccc
Confidence 6888889888999998875
No 243
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.65 E-value=0.0059 Score=57.83 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=61.9
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||-++ .|+.++..|... +..|.++.... .++.+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~T-------------------~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSRT-------------------KDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCCC-------------------CCHHHHhhhCCEEEE
Confidence 47899 9999999885 599999999998 99998876431 267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++--.. ++. .+++|||+++++++-
T Consensus 206 AvG~p~---~i~--~d~vk~gavVIDVGi 229 (283)
T COG0190 206 AVGKPH---FIK--ADMVKPGAVVIDVGI 229 (283)
T ss_pred ecCCcc---ccc--cccccCCCEEEecCC
Confidence 987543 444 457899999998753
No 244
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.65 E-value=0.0093 Score=55.79 Aligned_cols=64 Identities=30% Similarity=0.302 Sum_probs=41.2
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHH---HCC------ceecCCCcCCHHhhcCcCCEEE
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAG------FTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~---~~G------~~~~~~t~~~~~E~l~~ADVVi 183 (281)
|+|||.|.||..+|..+... |+ +|++.+...+.....+. ... .... ...+ .+.+++||+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~--~t~d-~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVT--GTND-YEDIAGSDVVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE--EcCC-HHHhCCCCEEE
Confidence 68999999999999988876 65 88888776432111111 110 0110 1134 45689999999
Q ss_pred Ecc
Q 023490 184 LLI 186 (281)
Q Consensus 184 Lav 186 (281)
++.
T Consensus 72 it~ 74 (300)
T cd01339 72 ITA 74 (300)
T ss_pred Eec
Confidence 976
No 245
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.64 E-value=0.033 Score=53.17 Aligned_cols=69 Identities=23% Similarity=0.205 Sum_probs=44.8
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHH----H---CC--ceecCCCcCCHHhhcC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR----A---AG--FTEENGTLGDIYETIS 177 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~----~---~G--~~~~~~t~~~~~E~l~ 177 (281)
++. +||+|||.|+||..+|..+... |+ +|.+.+...+.....+. . .+ ...+ ...+. +.++
T Consensus 4 ~~~-~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~ 73 (321)
T PTZ00082 4 IKR-RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIA 73 (321)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhC
Confidence 444 8999999999999999988877 75 77777765432111111 1 11 1111 12355 5789
Q ss_pred cCCEEEEcc
Q 023490 178 GSDLVLLLI 186 (281)
Q Consensus 178 ~ADVViLav 186 (281)
+||+|+++.
T Consensus 74 ~aDiVI~ta 82 (321)
T PTZ00082 74 GSDVVIVTA 82 (321)
T ss_pred CCCEEEECC
Confidence 999999966
No 246
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.64 E-value=0.0066 Score=57.46 Aligned_cols=76 Identities=18% Similarity=0.120 Sum_probs=60.6
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|+.+|..|... +..|.++..+ ..++.+.+++||+|+.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIs 206 (282)
T PRK14166 153 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 36899 999999966 7899999999988 8888877543 1267789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|+++++++
T Consensus 207 AvGkp~---~i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 207 AAGCVN---LLR--SDMVKEGVIVVDVG 229 (282)
T ss_pred cCCCcC---ccC--HHHcCCCCEEEEec
Confidence 998643 444 23689999999864
No 247
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.61 E-value=0.0023 Score=59.50 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=70.3
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-----------HCCceec-C------------
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE-N------------ 166 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-----------~~G~~~~-~------------ 166 (281)
++.++|||.|.||..+||-...+ |++|.+.++... ...+|. +.+.... .
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~~~-aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDANED-ALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCCHH-HHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 58899999999999999999998 999988876532 122221 1111100 0
Q ss_pred -CCcCCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 167 -GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 167 -~t~~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
.+..+..++++++|+||=++-.+... +++.++-..-|++++|. ..+.+.+..+..
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~ 142 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS 142 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh
Confidence 12346778888999998777665543 36666666778888875 567777766553
No 248
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.61 E-value=0.0043 Score=59.53 Aligned_cols=90 Identities=18% Similarity=0.101 Sum_probs=54.4
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCC-c-EEEEEecCCcccHHHHHH-C--CceecCCCcC---CHHhhcCcCCEEEEc
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLG---DIYETISGSDLVLLL 185 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G-~-~Viig~r~~~~s~~~A~~-~--G~~~~~~t~~---~~~E~l~~ADVViLa 185 (281)
|+|||.|.+|+.+++.|.+. + + +|++++|+..+..+.+.+ . .+....-... ++.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999987 4 4 788998875443333322 1 2211100112 256789999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+.....+++..+. .|...++.+
T Consensus 75 ~gp~~~~~v~~~~i~---~g~~yvD~~ 98 (386)
T PF03435_consen 75 AGPFFGEPVARACIE---AGVHYVDTS 98 (386)
T ss_dssp SSGGGHHHHHHHHHH---HT-EEEESS
T ss_pred CccchhHHHHHHHHH---hCCCeeccc
Confidence 999855555553322 355555533
No 249
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.60 E-value=0.0091 Score=53.32 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=61.2
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC---Cc-------------ccHHH--HH---HC--
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GS-------------RSFAE--AR---AA-- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~---~~-------------~s~~~--A~---~~-- 160 (281)
...|+. ++|+|||+|-||..+|..|... |+ ++++.|+. .+ +.... ++ +.
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 456788 9999999999999999999988 87 57666654 10 00000 00 10
Q ss_pred Cceec--CCC--cCCHHhhcCcCCEEEEccCChhHH-HH-HHHHHhcCCCCcEEEEeCCc
Q 023490 161 GFTEE--NGT--LGDIYETISGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 161 G~~~~--~~t--~~~~~E~l~~ADVViLavP~~~~~-~v-l~ei~~~mKpgaILi~aaG~ 214 (281)
....+ ... ..++++.++++|+|+-++ ++... .. +++....++...++. ..|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~-Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAF-DNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 01110 000 113456788999999995 55444 34 457777776654554 4444
No 250
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.59 E-value=0.013 Score=60.61 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=61.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH----hhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~----E~l~~ADVViLavP 187 (281)
+++-|+|+|.+|+.+++.|++. |+++++.+.+. +..+.+++.|+..-.|...+.+ .-++++|.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~d~-~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVLDHDP-DHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEEECCH-HHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6899999999999999999998 98887776553 4466677777643222233332 23679999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcE
Q 023490 188 DAAQADNYEKIFSCMKPNSI 207 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaI 207 (281)
+.+....+-.....+.|+..
T Consensus 474 d~~~n~~i~~~ar~~~p~~~ 493 (621)
T PRK03562 474 DPQTSLQLVELVKEHFPHLQ 493 (621)
T ss_pred CHHHHHHHHHHHHHhCCCCe
Confidence 87665444333344445543
No 251
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.59 E-value=0.0074 Score=57.46 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=60.6
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|..++..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 156 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVs 209 (294)
T PRK14187 156 RNLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVA 209 (294)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37999 999999966 7899999999988 8888877543 1267789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++||+++
T Consensus 210 AvGkp~---~i~--~~~ik~gaiVIDVG 232 (294)
T PRK14187 210 AVGIPN---FVK--YSWIKKGAIVIDVG 232 (294)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 998644 344 24588999998863
No 252
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.58 E-value=0.0063 Score=55.15 Aligned_cols=79 Identities=16% Similarity=0.023 Sum_probs=49.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc----------ccHHHHHHCCceec--CCCcCCHH
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE--NGTLGDIY 173 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----------~s~~~A~~~G~~~~--~~t~~~~~ 173 (281)
.+++| +++.|.|+|+.|+.+|+.|.+. |..|+...+.+. +..+..++.+-... .....+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 57899 9999999999999999999998 986554444433 22333333321110 00011112
Q ss_pred hh-cCcCCEEEEccCChhH
Q 023490 174 ET-ISGSDLVLLLISDAAQ 191 (281)
Q Consensus 174 E~-l~~ADVViLavP~~~~ 191 (281)
++ -.++|+++.|.+.+..
T Consensus 92 ~l~~~~~DVlipaA~~~~i 110 (217)
T cd05211 92 AILGLDVDIFAPCALGNVI 110 (217)
T ss_pred cceeccccEEeeccccCcc
Confidence 22 2379999999887643
No 253
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.55 E-value=0.012 Score=58.23 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=61.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc--------------cHHHHHHC----C-ceecCCCcCCH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------SFAEARAA----G-FTEENGTLGDI 172 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~--------------s~~~A~~~----G-~~~~~~t~~~~ 172 (281)
|+|.|||.|-.|-..+..|.+. |++|+..+....+ -.++..+. | +.. ..|.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f----Ttd~ 70 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF----TTDY 70 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE----EcCH
Confidence 7899999999999999999999 9998766643211 11111111 1 121 3578
Q ss_pred HhhcCcCCEEEEccCChh------HH----HHHHHHHhcCCCCcEEEE
Q 023490 173 YETISGSDLVLLLISDAA------QA----DNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~------~~----~vl~ei~~~mKpgaILi~ 210 (281)
+++++++|+++|++|... .+ .+.+++.++++..++|++
T Consensus 71 ~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~ 118 (414)
T COG1004 71 EEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVI 118 (414)
T ss_pred HHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 899999999999987422 12 244578888987676653
No 254
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.54 E-value=0.0077 Score=58.52 Aligned_cols=76 Identities=18% Similarity=0.092 Sum_probs=60.2
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..+|..|... |..|.++..+ ..++++.+++||+||.
T Consensus 210 i~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIs 263 (345)
T PLN02897 210 VEIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIA 263 (345)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999966 6799999999988 8888777533 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++||+++
T Consensus 264 AvGkp~---~v~--~d~vk~GavVIDVG 286 (345)
T PLN02897 264 AAGIPN---LVR--GSWLKPGAVVIDVG 286 (345)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEcc
Confidence 998644 344 24589999999865
No 255
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.54 E-value=0.0089 Score=56.63 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=60.1
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..++.-|... +..|.++..+ ..++.+.+++||+|+.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~ 206 (282)
T PRK14182 153 VDPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVA 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37999 999999966 7899999999888 8888876432 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-. .++. ..++|+|+++++++
T Consensus 207 AvGk~---~~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 207 AIGKA---ELVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred ecCCc---CccC--HHHcCCCCEEEEee
Confidence 99853 2454 24589999998764
No 256
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.53 E-value=0.0087 Score=56.73 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=60.0
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|+.+|..|... +..|.++..+ ..++.+.+++||+|+.
T Consensus 154 i~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 154 IDISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIV 207 (284)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 46999 999999955 8899999999988 8888877432 1267789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 208 AvG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 208 AVGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred ecCCCC---cCC--HHHcCCCCEEEEee
Confidence 997543 454 23469999999865
No 257
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.49 E-value=0.008 Score=58.77 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=60.3
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|+.++..|... +..|.++..+ ..++.+.+++|||||.
T Consensus 227 i~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIs 280 (364)
T PLN02616 227 VEIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIIS 280 (364)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 36899 999999965 7899999999988 8888877432 1367888999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|||++||+++
T Consensus 281 AvGkp~---~i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 281 AVGQPN---MVR--GSWIKPGAVVIDVG 303 (364)
T ss_pred cCCCcC---cCC--HHHcCCCCEEEecc
Confidence 998543 344 24589999998764
No 258
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.48 E-value=0.0084 Score=57.08 Aligned_cols=80 Identities=20% Similarity=0.202 Sum_probs=57.6
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|+.++..|.+.+.. .+..|.+.... ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~--~~atVt~~hs~-------------------t~~l~~~~~~ADIvI~ 212 (295)
T PRK14174 155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKE--SNCTVTICHSA-------------------TKDIPSYTRQADILIA 212 (295)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHhcccc--CCCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 47999 999999966 7899999998761100 06677666532 1257789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-. .++.. .++|+|++|++++
T Consensus 213 Avg~~---~li~~--~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKA---RFITA--DMVKPGAVVIDVG 235 (295)
T ss_pred ecCcc---CccCH--HHcCCCCEEEEee
Confidence 99654 34551 2359999998764
No 259
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.48 E-value=0.0077 Score=65.88 Aligned_cols=82 Identities=16% Similarity=0.108 Sum_probs=54.0
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-------------EEEEEecCCcccHHHHHHC-Cc---eecCCCcCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-------------VVKVGLRKGSRSFAEARAA-GF---TEENGTLGD 171 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-------------~Viig~r~~~~s~~~A~~~-G~---~~~~~t~~~ 171 (281)
+.+++|+|||.|.||+..++.|.+. .+. .|.++++...+..+.+... ++ .. | ..+
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~-----~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~l-D--v~D 638 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV-----KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQL-D--VSD 638 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC-----cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEe-e--cCC
Confidence 3348999999999999999999764 022 3677776543333333333 42 21 1 235
Q ss_pred HHhh---cCcCCEEEEccCChhHHHHHHHH
Q 023490 172 IYET---ISGSDLVLLLISDAAQADNYEKI 198 (281)
Q Consensus 172 ~~E~---l~~ADVViLavP~~~~~~vl~ei 198 (281)
.+++ ++++|+|+.++|..-+..+....
T Consensus 639 ~e~L~~~v~~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 639 SESLLKYVSQVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred HHHHHHhhcCCCEEEECCCchhhHHHHHHH
Confidence 4444 47899999999997776666543
No 260
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.47 E-value=0.0094 Score=56.51 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=59.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHh--hhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra--~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
.+|+| |++.|||-+ ..|..++..|.. . +..|.++..+ ..++.+.+++||+|
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIv 207 (284)
T PRK14193 154 VELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADII 207 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEE
Confidence 47899 999999955 789999999987 5 7778777432 12678899999999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+.++.-.. ++. ..++|+|+++++++
T Consensus 208 V~AvGkp~---~i~--~~~ik~GavVIDvG 232 (284)
T PRK14193 208 VAAAGVAH---LVT--ADMVKPGAAVLDVG 232 (284)
T ss_pred EEecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 99998653 454 24689999998865
No 261
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.46 E-value=0.0074 Score=47.45 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=49.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP~~ 189 (281)
.++.|+|.|++|++++...... .|++... +++..+.+ .. ..-.|+.. +.+++|+.+. .|+-+|++|..
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~g~~i~~-~~dv~~~~-~G-~~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---RGFGIVA-VFDVDPEK-IG-KEIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---HCECEEE-EEEECTTT-TT-SEETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---cCCCCEE-EEEcCCCc-cC-cEECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5799999999999998666554 2333332 33333221 10 11135553 4467776665 99999999998
Q ss_pred hHHHHHHHHHh
Q 023490 190 AQADNYEKIFS 200 (281)
Q Consensus 190 ~~~~vl~ei~~ 200 (281)
...+...++++
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777776554
No 262
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.45 E-value=0.018 Score=55.68 Aligned_cols=142 Identities=12% Similarity=0.065 Sum_probs=81.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC--
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-- 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~-- 188 (281)
.+|||||. .+|+..++.+++. ..+.+++ ++++..++..+.+++.|+.. +.+.+|++++.|++++++|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~----~~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA----PERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC----CCCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5899999988875 0035554 45555555556778888763 67999999988999888764
Q ss_pred --hhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhc-ccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEEe
Q 023490 189 --AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSI-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (281)
Q Consensus 189 --~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~-~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~av 265 (281)
..+.++..+. |+.|..|+.=+=+..+..++. ...-..++.+.-..=+..-+.+|++-.+|+.++=.|-+.++..
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v~~f~p~~~~vr~~i~~~~~i~~~~~~~~i~~ 151 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLVNTFYPHLPAVRRFIEYARQLHHRRGPRFVEA 151 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEEEecCHHHHHHHHHHHcchhHhhcCCCCccee
Confidence 3444444443 455665553222222221110 0011123333222222234577888888866654555543333
No 263
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.41 E-value=0.0076 Score=54.95 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=31.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r 148 (281)
.++.| ++|.|.|+|++|+.+|+.|.+. |++|+ +.+.
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv~v~D~ 63 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVVAVSDS 63 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence 67899 9999999999999999999998 99887 4443
No 264
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.41 E-value=0.0052 Score=54.87 Aligned_cols=81 Identities=11% Similarity=0.214 Sum_probs=49.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP~~ 189 (281)
.+|+|||+|.+|..+++.+... ..|++++...+.+..... ..-.|+.. ....++++++++ .|+|++++|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~----~~g~~ivgv~D~d~~~~~-~~i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE----KRGFKIVAAFDVDPEKIG-TKIGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc----cCCcEEEEEEECChhhcC-CEeCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 7899999999999999864321 127776644433221110 00123321 113467777755 99999999998
Q ss_pred hHHHHHHHHH
Q 023490 190 AQADNYEKIF 199 (281)
Q Consensus 190 ~~~~vl~ei~ 199 (281)
.+.++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 8766555443
No 265
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.40 E-value=0.013 Score=57.26 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=44.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|.|||+|.+|.++|+.|++. |++|...++.... ... .+...+ ......+...+++|+|+.+.+...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~~~-~~~---~~~~~~-~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSLEA-LQS---CPYIHE-RYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCccc-cch---hHHHhh-hhcCCcHHHhcCCCEEEECCCCCC
Confidence 8999999999999999999999 9988777765332 111 111100 001133344578999999876543
No 266
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.36 E-value=0.024 Score=49.96 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=51.1
Q ss_pred EEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc-cHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEccCC
Q 023490 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLISD 188 (281)
Q Consensus 114 IGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~-s~~~A~~~G~~~~~~t~~---~~~E~l~~ADVViLavP~ 188 (281)
|.|+| .|.+|+.+++.|.+. +++|.+..|+... ..+..+..|+..-...+. ++.++++++|.|+++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 68999 599999999999998 9999988887632 223445567543222232 356789999999999993
No 267
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=96.33 E-value=0.04 Score=50.08 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC--C--------CcCCHHhhcCcCCEEEEccCChhH
Q 023490 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 122 mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~--~--------t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
||..+|..|... |++|.+..|. +..+.-++.|+...+ + ...++++ +...|+|++++|-.+.
T Consensus 2 iG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~ 72 (293)
T TIGR00745 2 VGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQT 72 (293)
T ss_pred chHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhH
Confidence 788999999888 9999888875 223344455653321 1 0112344 6789999999999888
Q ss_pred HHHHHHHHhcCCCCcEEE-EeCCcch-hhhhh
Q 023490 192 ADNYEKIFSCMKPNSILG-LSHGFLL-GHLQS 221 (281)
Q Consensus 192 ~~vl~ei~~~mKpgaILi-~aaG~~l-~~l~~ 221 (281)
.+.++.+.+++.++++|+ +--|+.. +.+..
T Consensus 73 ~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~ 104 (293)
T TIGR00745 73 EEAAALLLPLIGKNTKVLFLQNGLGHEERLRE 104 (293)
T ss_pred HHHHHHhHhhcCCCCEEEEccCCCCCHHHHHH
Confidence 888999999999988665 5677763 34443
No 268
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.31 E-value=0.019 Score=54.18 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=73.2
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
| ++++|||--.=-..+++.|.+. |++|.++.-+++. -...|+.. ..+.+++++++|+|++.+|..
T Consensus 2 ~-~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~----~~~~g~~~----~~~~~~~~~~ad~ii~~~p~~ 66 (296)
T PRK08306 2 G-KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD----HGFTGATK----SSSLEEALSDVDVIILPVPGT 66 (296)
T ss_pred C-cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc----cccCCcee----eccHHHHhccCCEEEECCccc
Confidence 6 8999999888888999999999 9998875433211 12346653 346788999999999999973
Q ss_pred hHH----------H-HH-HHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccC
Q 023490 190 AQA----------D-NY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 190 ~~~----------~-vl-~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPn 238 (281)
... + .+ .+.+..|+++++++. |+...++.+ .....++.++..+|.
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~~--G~~~~~~~~--~~~~~gi~~~~~~~~ 123 (296)
T PRK08306 67 NDEGNVDTVFSNEKLVLTEELLELTPEHCTIFS--GIANPYLKE--LAKETNRKLVELFER 123 (296)
T ss_pred cCCceeeccccccCCcchHHHHHhcCCCCEEEE--ecCCHHHHH--HHHHCCCeEEEEecc
Confidence 211 1 23 368899999986553 443322222 112356777766654
No 269
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.30 E-value=0.012 Score=56.03 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=45.9
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC--------CceecCCCcCCHHhhcCc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--------GFTEENGTLGDIYETISG 178 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~--------G~~~~~~t~~~~~E~l~~ 178 (281)
.| +||+|||.|.+|.++|..|... |. ++.+.+.........+.+. .... ..+..+.+++
T Consensus 5 ~~-~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i----~~~~~~~~~~ 73 (315)
T PRK00066 5 QH-NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI----YAGDYSDCKD 73 (315)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE----EeCCHHHhCC
Confidence 56 8999999999999999999888 76 6777776543222222211 1111 1233466899
Q ss_pred CCEEEEccC
Q 023490 179 SDLVLLLIS 187 (281)
Q Consensus 179 ADVViLavP 187 (281)
||+|+++.-
T Consensus 74 adivIitag 82 (315)
T PRK00066 74 ADLVVITAG 82 (315)
T ss_pred CCEEEEecC
Confidence 999999543
No 270
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.30 E-value=0.029 Score=49.88 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=55.5
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC-------------------cccHHHHHHC----
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~-------------------~~s~~~A~~~---- 160 (281)
...|.. ++|.|||+|-+|..+|++|... |. ++.+.|+.. .+....+++.
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 356888 9999999999999999999998 76 666666541 0111111111
Q ss_pred -Cceec--CCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHHh
Q 023490 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (281)
Q Consensus 161 -G~~~~--~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~~ 200 (281)
.+..+ .... .+.++.++++|+||.++........+++...
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~ 133 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACV 133 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 11100 0111 1245678999999999866555556765443
No 271
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.26 E-value=0.031 Score=53.02 Aligned_cols=91 Identities=14% Similarity=0.244 Sum_probs=67.0
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~-~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP 187 (281)
.+|.|.| .|++|..+.++|.++ |+++++...+.. . .+-.|+.. +.+++|+-+. .|+.++++|
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~----~~v~G~~~----y~sv~dlp~~~~~DlAvi~vp 74 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGG----TTVLGLPV----FNTVAEAVEATGANASVIYVP 74 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCC----CeEeCeec----cCCHHHHhhccCCCEEEEEcC
Confidence 6788999 588999999999998 887333333220 1 11246664 6788888876 899999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcchh
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l~ 217 (281)
.....+.+++... ..-...+++++||.+.
T Consensus 75 ~~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 75 PPFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 9988888887654 3445678899999864
No 272
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.20 E-value=0.017 Score=55.09 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=58.7
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..++..|... ....+..|.++..+ ..++.+.+++||+|+.
T Consensus 153 i~l~G-K~vvViGrS~iVGkPla~lL~~~--~~~~~aTVtvchs~-------------------T~nl~~~~~~ADIvIs 210 (293)
T PRK14185 153 IETSG-KKCVVLGRSNIVGKPMAQLMMQK--AYPGDCTVTVCHSR-------------------SKNLKKECLEADIIIA 210 (293)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHcC--CCCCCCEEEEecCC-------------------CCCHHHHHhhCCEEEE
Confidence 46999 999999966 7899999999875 00002567666432 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 211 AvGkp~---~i~--~~~vk~gavVIDvG 233 (293)
T PRK14185 211 ALGQPE---FVK--ADMVKEGAVVIDVG 233 (293)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 998644 344 25689999998865
No 273
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.19 E-value=0.011 Score=57.31 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=46.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.++.| +++.|||.|.||.-+++.|++. |. +|.+.+|.... ...+-. .....+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 46899 9999999999999999999998 85 68889887421 111100 0011144578999999
Q ss_pred cc
Q 023490 185 LI 186 (281)
Q Consensus 185 av 186 (281)
++
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
No 274
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.18 E-value=0.024 Score=55.94 Aligned_cols=73 Identities=23% Similarity=0.175 Sum_probs=52.4
Q ss_pred cccCCCcEEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
....+ ++|.|||+|..|.+ +|+.|++. |++|.+.+.+.....+..++.|+... .....+.+.++|+|++
T Consensus 3 ~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv~ 72 (461)
T PRK00421 3 ELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVVY 72 (461)
T ss_pred CcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEEE
Confidence 45677 99999999999999 79999999 99998887654333333455677642 1223456778999988
Q ss_pred --ccCC
Q 023490 185 --LISD 188 (281)
Q Consensus 185 --avP~ 188 (281)
.+|+
T Consensus 73 spgi~~ 78 (461)
T PRK00421 73 SSAIPD 78 (461)
T ss_pred CCCCCC
Confidence 3454
No 275
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.18 E-value=0.012 Score=55.76 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=63.4
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCH--HhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI--YETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~--~E~l~~ADVV 182 (281)
.+.+| +++.|+|.|-.+++++..|.+. |. +|.|.+|..++..+.+...+-.......... .+.+.++|+|
T Consensus 122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dli 194 (283)
T COG0169 122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLL 194 (283)
T ss_pred cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEE
Confidence 56679 9999999999999999999999 95 7999999876655665544411000001111 1223279999
Q ss_pred EEccCChhHHH----HHHHHHhcCCCCcEEEE
Q 023490 183 LLLISDAAQAD----NYEKIFSCMKPNSILGL 210 (281)
Q Consensus 183 iLavP~~~~~~----vl~ei~~~mKpgaILi~ 210 (281)
|-+||..-... .+. ...++++.++.+
T Consensus 195 INaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D 224 (283)
T COG0169 195 INATPVGMAGPEGDSPVP--AELLPKGAIVYD 224 (283)
T ss_pred EECCCCCCCCCCCCCCCc--HHhcCcCCEEEE
Confidence 99999854322 222 445666666654
No 276
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.14 E-value=0.011 Score=55.99 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=58.3
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHh----hhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCC
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra----~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~AD 180 (281)
.+++| |++.|||-+ ..|+.++..|.. . +..|.++..+ ..++.+.+++||
T Consensus 153 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~AD 206 (286)
T PRK14184 153 LSPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREAD 206 (286)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCC
Confidence 47999 999999966 789999999987 5 6777766532 126778999999
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+.++.-.. ++.+ .++|+|+++++++
T Consensus 207 IVI~AvG~p~---li~~--~~vk~GavVIDVG 233 (286)
T PRK14184 207 FLFVAIGRPR---FVTA--DMVKPGAVVVDVG 233 (286)
T ss_pred EEEEecCCCC---cCCH--HHcCCCCEEEEee
Confidence 9999996533 4442 3459999998764
No 277
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.14 E-value=0.029 Score=53.14 Aligned_cols=92 Identities=15% Similarity=0.269 Sum_probs=68.5
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP~ 188 (281)
.+|.|.| .|.+|..+-+++++. |.+++++..++ +. ..+-.|+.. +.+++|+-+. .|+.++++|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~-~~--~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPG-KG--GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCC-CC--cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6789999 899999999999998 88866555443 10 112356664 6788887776 6999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCcchh
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~~l~ 217 (281)
....+.+++... ..-..++++++||...
T Consensus 74 ~~v~~~l~e~~~-~Gvk~avIis~Gf~e~ 101 (286)
T TIGR01019 74 PFAADAIFEAID-AGIELIVCITEGIPVH 101 (286)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 988888887654 3334678899999753
No 278
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.11 E-value=0.015 Score=54.46 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=50.4
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCC---cccHHHHHHC---C--ceecCCCcC---CHHh
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIYE 174 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~---~~s~~~A~~~---G--~~~~~~t~~---~~~E 174 (281)
+++| +++.|+|.|-+|++++..|... |.+ |.+.+|.. ++..+.+++. + ......... +.++
T Consensus 123 ~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 123 DVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 5788 9999999999999999999988 985 88888874 2222322221 1 110000011 2334
Q ss_pred hcCcCCEEEEccCCh
Q 023490 175 TISGSDLVLLLISDA 189 (281)
Q Consensus 175 ~l~~ADVViLavP~~ 189 (281)
.++++|+||.+||..
T Consensus 196 ~~~~~DilINaTp~G 210 (289)
T PRK12548 196 EIASSDILVNATLVG 210 (289)
T ss_pred hhccCCEEEEeCCCC
Confidence 567889999999974
No 279
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.98 E-value=0.021 Score=56.88 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=52.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
..+.+ ++|.|+|+|..|.++|+.|++. |++|.+.++......+...+.|+.... .....+-+.++|+||..
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADIS--TAEASDQLDSFSLVVTS 81 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEEe--CCCchhHhcCCCEEEeC
Confidence 46788 9999999999999999999999 999888876533222223456765421 11234556789999874
Q ss_pred --cCC
Q 023490 186 --ISD 188 (281)
Q Consensus 186 --vP~ 188 (281)
+|+
T Consensus 82 pgi~~ 86 (473)
T PRK00141 82 PGWRP 86 (473)
T ss_pred CCCCC
Confidence 454
No 280
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=95.94 E-value=0.058 Score=51.97 Aligned_cols=92 Identities=11% Similarity=0.174 Sum_probs=69.7
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEcc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLav 186 (281)
.+|-|-| .|..|.-.++.+++. |-+|+.+..++. .... ..|+.. +.+.+|+.+. .|+.++.+
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 6899999 699999999999999 988887776543 2111 126664 6789999887 99999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcchh
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~l~ 217 (281)
|+....+.+.|.... .-..+++++.||...
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe~ 126 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQH 126 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCchh
Confidence 998888877654432 223477889998853
No 281
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.94 E-value=0.036 Score=53.82 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=62.3
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcC-CHHhhcCcCCEEEEcc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG-DIYETISGSDLVLLLI 186 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~-~~~E~l~~ADVViLav 186 (281)
+| ++|+|+|.|-+|.--.|.+++. |.+|+..++... ..+.|++.|...- +.... ..+++-+.+|+|+..+
T Consensus 166 pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~~~-K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 166 PG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRSEE-KLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCChH-HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 47 9999999999999888998888 999988877654 4677888885431 00001 1223333399999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+ .. .++..++.++++-.++++
T Consensus 238 ~-~~---~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 238 G-PA---TLEPSLKALRRGGTLVLV 258 (339)
T ss_pred C-hh---hHHHHHHHHhcCCEEEEE
Confidence 9 33 455556667776655433
No 282
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.92 E-value=0.026 Score=55.75 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=50.6
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HHHHHHCCceecCCCcCCHHhhcCcCCE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~~A~~~G~~~~~~t~~~~~E~l~~ADV 181 (281)
.-+.| ++|+|+|+|..|.++|+.|++. |++|.+.++..... .+..++.|+....+ ....+.+.++|+
T Consensus 10 ~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~--~~~~~~~~~~dl 80 (458)
T PRK01710 10 KFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVLG--ENYLDKLDGFDV 80 (458)
T ss_pred hhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEeC--CCChHHhccCCE
Confidence 44678 9999999999999999999999 99998888654211 12345567653211 122455688999
Q ss_pred EEEc
Q 023490 182 VLLL 185 (281)
Q Consensus 182 ViLa 185 (281)
|+..
T Consensus 81 VV~S 84 (458)
T PRK01710 81 IFKT 84 (458)
T ss_pred EEEC
Confidence 9885
No 283
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.92 E-value=0.014 Score=57.74 Aligned_cols=75 Identities=20% Similarity=0.122 Sum_probs=45.1
Q ss_pred cEEEEEccCchHHHHHH--HHHhhhhhccCCcEEEEEecCCcccHHHH-------HHCCceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA-------RAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~--~Lra~~~~~~~G~~Viig~r~~~~s~~~A-------~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
++|+|||.|++|.+.+. .+.... +-.|.+|.++++..+...... ...+....-....|..+++++||+|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~--~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTP--ELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCC--CCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEE
Confidence 47999999999998665 332110 111678888877643211111 1111110001145788999999999
Q ss_pred EEccCC
Q 023490 183 LLLISD 188 (281)
Q Consensus 183 iLavP~ 188 (281)
+.+++.
T Consensus 79 i~ai~~ 84 (423)
T cd05297 79 INTIQV 84 (423)
T ss_pred EEeeEe
Confidence 999994
No 284
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.91 E-value=0.039 Score=53.81 Aligned_cols=73 Identities=23% Similarity=0.196 Sum_probs=51.0
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH----HHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~----~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
+++| |++.|||.|.+|.++|+.|.+. |++|.+.++...... +...+.|....- ....++...+.|+|
T Consensus 2 ~~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~v 72 (450)
T PRK14106 2 ELKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLV 72 (450)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEE
Confidence 4788 9999999999999999999999 999998887642222 222334543210 11233556789999
Q ss_pred EEccCC
Q 023490 183 LLLISD 188 (281)
Q Consensus 183 iLavP~ 188 (281)
+.++-.
T Consensus 73 v~~~g~ 78 (450)
T PRK14106 73 VVSPGV 78 (450)
T ss_pred EECCCC
Confidence 996643
No 285
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.90 E-value=0.029 Score=53.31 Aligned_cols=80 Identities=11% Similarity=0.165 Sum_probs=58.3
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|+.++..|.... +..+..|.++..+ ..++.+.+++||+|+.
T Consensus 149 i~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~ 206 (287)
T PRK14181 149 IPLHG-RHVAIVGRSNIVGKPLAALLMQKH--PDTNATVTLLHSQ-------------------SENLTEILKTADIIIA 206 (287)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHhCc--CCCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999966 78999999997650 0013466655332 2367888999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 207 AvG~p~---~i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 207 AIGVPL---FIK--EEMIAEKAVIVDVG 229 (287)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 998643 444 24589999999865
No 286
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.88 E-value=0.1 Score=49.01 Aligned_cols=94 Identities=21% Similarity=0.155 Sum_probs=64.9
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC--CcccHHHHHHCCceecCCCcCCHHh--hcCcCCEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVL 183 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~--~~~s~~~A~~~G~~~~~~t~~~~~E--~l~~ADVVi 183 (281)
.+| .++.|+|.|.+|...++.++.. |.+|++.++. ..+..+.+++.|...-+....+..+ .....|+|+
T Consensus 171 ~~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 171 WNP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEE
Confidence 368 9999999999999999999998 9888777763 2344567788887531111111111 234589999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
-++.... .+++.+..++++..+++.
T Consensus 244 d~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 244 EATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred ECcCCHH---HHHHHHHHccCCcEEEEE
Confidence 9987432 566677788888766543
No 287
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.88 E-value=0.062 Score=54.19 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=69.9
Q ss_pred ccCCCcEEEEEcc----------CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-----cee-------
Q 023490 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTE------- 164 (281)
Q Consensus 107 ~l~G~ktIGIIG~----------G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-----~~~------- 164 (281)
.+.| ++|+|+|+ .+-...+++.|... |.+|.+++..-.. .+.....+ +..
T Consensus 321 ~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
T PLN02353 321 TVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVTE-EQIQRDLSMNKFDWDHPRHLQPM 392 (473)
T ss_pred ccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-HHHHHHhhccccccccccccccc
Confidence 5899 99999998 55778888888888 9999988876321 11111111 000
Q ss_pred ------cCCCcCCHHhhcCcCCEEEEccCChhHHHH-HHHHHhcCCCCcEEEEeCCcc
Q 023490 165 ------ENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 165 ------~~~t~~~~~E~l~~ADVViLavP~~~~~~v-l~ei~~~mKpgaILi~aaG~~ 215 (281)
+...+.+.+++++++|+|++++.-.+..++ +.++.+.|++..+|++..++.
T Consensus 393 ~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l 450 (473)
T PLN02353 393 SPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVL 450 (473)
T ss_pred ccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCC
Confidence 001133567899999999999998877653 456777787666888988765
No 288
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.87 E-value=0.043 Score=52.65 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=45.9
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH----C-CceecCCCc-CCHHhhcCc
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----A-GFTEENGTL-GDIYETISG 178 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~----~-G~~~~~~t~-~~~~E~l~~ 178 (281)
..++. +||+|||. |++|..+|..|... +...++.+.+.... ...+.+ . .....+.+. .+..+.+++
T Consensus 4 ~~~~~-~KI~IiGaaG~VGs~~a~~l~~~----~~~~elvL~Di~~~--~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 4 SALKM-FKVAVLGAAGGIGQPLSLLLKQN----PHVSELSLYDIVGA--PGVAADLSHIDTPAKVTGYADGELWEKALRG 76 (321)
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHhcC----CCCCEEEEEecCCC--cccccchhhcCcCceEEEecCCCchHHHhCC
Confidence 45666 99999999 99999999999855 11346777776321 111111 0 111111010 122688999
Q ss_pred CCEEEEccCC
Q 023490 179 SDLVLLLISD 188 (281)
Q Consensus 179 ADVViLavP~ 188 (281)
+|+|+++.-.
T Consensus 77 aDvVVitaG~ 86 (321)
T PTZ00325 77 ADLVLICAGV 86 (321)
T ss_pred CCEEEECCCC
Confidence 9999986543
No 289
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.83 E-value=0.064 Score=51.67 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=57.8
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCc-------------------ccHHH-----HHH
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS-------------------RSFAE-----ARA 159 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~-------------------~s~~~-----A~~ 159 (281)
...|++ ++|.|||+|.+|..+|+.|... |. ++.+.|+..- ..... ..+
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 467889 9999999999999999999998 76 5666665420 00111 111
Q ss_pred --CCceec----CCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhc
Q 023490 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSC 201 (281)
Q Consensus 160 --~G~~~~----~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~ 201 (281)
.++..+ +-+..+++++++++|+|+.++-......+++++...
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~ 139 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQK 139 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 122111 111134678899999999999655544467765544
No 290
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.82 E-value=0.036 Score=53.09 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=42.4
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc-------EEEEEecCCcc--cHHHHHH--C-------CceecCCCcCCH
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARA--A-------GFTEENGTLGDI 172 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~-------~Viig~r~~~~--s~~~A~~--~-------G~~~~~~t~~~~ 172 (281)
+||+|||. |.+|.++|..|... |+ ++.+.+..... ....+.+ . .+.. ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 68999999 99999999998865 44 56666653221 1111111 1 1111 1345
Q ss_pred HhhcCcCCEEEEccC
Q 023490 173 YETISGSDLVLLLIS 187 (281)
Q Consensus 173 ~E~l~~ADVViLavP 187 (281)
.+.+++||+|+++.-
T Consensus 73 ~~~~~daDivvitaG 87 (322)
T cd01338 73 NVAFKDADWALLVGA 87 (322)
T ss_pred HHHhCCCCEEEEeCC
Confidence 688999999999643
No 291
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.73 E-value=0.025 Score=53.92 Aligned_cols=66 Identities=23% Similarity=0.228 Sum_probs=42.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC--C--c----eecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--F----TEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~--G--~----~~~~~t~~~~~E~l~~ADV 181 (281)
+||+|||.|.+|.++|..|... |. ++.+.+.........+.+. . + ... ...+.+ .+++||+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~--~~~dy~-~~~~adi 74 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE--ADKDYS-VTANSKV 74 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE--ECCCHH-HhCCCCE
Confidence 6999999999999999998876 54 6777776543222222211 1 1 110 013555 4899999
Q ss_pred EEEcc
Q 023490 182 VLLLI 186 (281)
Q Consensus 182 ViLav 186 (281)
|+++.
T Consensus 75 vvita 79 (312)
T cd05293 75 VIVTA 79 (312)
T ss_pred EEECC
Confidence 99943
No 292
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.68 E-value=0.031 Score=55.02 Aligned_cols=67 Identities=28% Similarity=0.292 Sum_probs=47.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| ++|.|||+|..|.+.|+.|++. |++|.+.++..... ....+.|+... ..+ .+-+.++|+|+.
T Consensus 5 ~~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~-~~l~~~g~~~~---~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 5 TGFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPASR-AKAAAAGITTA---DLR-TADWSGFAALVL 71 (460)
T ss_pred cccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhhH-HHHHhcCcccc---CCC-hhHHcCCCEEEE
Confidence 45788 9999999999999999999999 99988877553322 22345676531 012 234578999886
No 293
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.62 E-value=0.051 Score=54.41 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=51.3
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
..+.| +++.|+|+|..|.+.++.|++. |.+|++.++... ..+.+++.|+.... .....+.++++|+|+..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~~~-~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDDPD-ALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCCHH-HHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 34578 9999999999999999999998 999988775533 23345566765321 11234567889998884
Q ss_pred c
Q 023490 186 I 186 (281)
Q Consensus 186 v 186 (281)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 4
No 294
>PRK05442 malate dehydrogenase; Provisional
Probab=95.62 E-value=0.057 Score=51.85 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=42.2
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCc-------EEEEEecCCcc------cHHHHHHC-----CceecCCCcCC
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR------SFAEARAA-----GFTEENGTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~-------~Viig~r~~~~------s~~~A~~~-----G~~~~~~t~~~ 171 (281)
..||+|||. |.+|.++|..|... ++ ++.+.+..... ..+..... .... ..+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i----~~~ 73 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI----TDD 73 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE----ecC
Confidence 479999998 99999999988764 32 56666653211 11111111 1111 235
Q ss_pred HHhhcCcCCEEEEccC
Q 023490 172 IYETISGSDLVLLLIS 187 (281)
Q Consensus 172 ~~E~l~~ADVViLavP 187 (281)
..+.+++||+|+++.-
T Consensus 74 ~y~~~~daDiVVitaG 89 (326)
T PRK05442 74 PNVAFKDADVALLVGA 89 (326)
T ss_pred hHHHhCCCCEEEEeCC
Confidence 5688999999998554
No 295
>PRK04148 hypothetical protein; Provisional
Probab=95.62 E-value=0.16 Score=43.29 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=68.7
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee-cCCCcCCHHhhcCcCCEEEEcc
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~-~~~t~~~~~E~l~~ADVViLav 186 (281)
.+| +++.+||+| -|.++|+.|.+. |++|+..+.. +...+.+++.+... .++.+....+.-+++|+|--.=
T Consensus 15 ~~~-~kileIG~G-fG~~vA~~L~~~------G~~ViaIDi~-~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 15 GKN-KKIVELGIG-FYFKVAKKLKES------GFDVIVIDIN-EKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred ccC-CEEEEEEec-CCHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 467 899999999 899999999988 9998766554 44566676666432 1334445668899999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEE
Q 023490 187 SDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi 209 (281)
|+.+...-+-++...++-..+|.
T Consensus 86 pp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 86 PPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Confidence 99887776667777775554544
No 296
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.61 E-value=0.034 Score=54.60 Aligned_cols=77 Identities=17% Similarity=0.117 Sum_probs=50.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC-CCcCCHHhhcCcCCEEEE---cc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL---LI 186 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~-~t~~~~~E~l~~ADVViL---av 186 (281)
+++|||||-|-+|+=++...+.. |+++++.+..... ............+ .....+.|+++.||+|.. ++
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~~~~-PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V 73 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARL------GIKVIVLDPDADA-PAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENV 73 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCCCCC-chhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccC
Confidence 48999999999999999999998 9999887755322 2111112222100 001246789999999987 56
Q ss_pred CChhHHHH
Q 023490 187 SDAAQADN 194 (281)
Q Consensus 187 P~~~~~~v 194 (281)
|......+
T Consensus 74 ~~~aL~~l 81 (375)
T COG0026 74 PAEALEKL 81 (375)
T ss_pred CHHHHHHH
Confidence 65444333
No 297
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.53 E-value=0.051 Score=51.21 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=51.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCc---ccHHHHHHCCceecC-CCcCC------HHh
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGD------IYE 174 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~---~s~~~A~~~G~~~~~-~t~~~------~~E 174 (281)
.+++| +++.|||.|-.+++++..|... |. +|.+++|..+ +..+.+.+.+..... -...+ +.+
T Consensus 120 ~~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~ 192 (288)
T PRK12749 120 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 192 (288)
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh
Confidence 35788 9999999999999999999887 86 7889998742 333333332210000 00112 234
Q ss_pred hcCcCCEEEEccCCh
Q 023490 175 TISGSDLVLLLISDA 189 (281)
Q Consensus 175 ~l~~ADVViLavP~~ 189 (281)
.+.++|+||.++|..
T Consensus 193 ~~~~aDivINaTp~G 207 (288)
T PRK12749 193 ALASADILTNGTKVG 207 (288)
T ss_pred hcccCCEEEECCCCC
Confidence 567899999999974
No 298
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.52 E-value=0.057 Score=53.36 Aligned_cols=71 Identities=27% Similarity=0.197 Sum_probs=50.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HHHHHHCCceecCCCcCCHHhhcCcCCE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~~A~~~G~~~~~~t~~~~~E~l~~ADV 181 (281)
..+.| +++.|||.|.+|.++|+.|++. |++|.+.++.+... .+..++.|+... ..+..+...++|+
T Consensus 12 ~~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~ 81 (480)
T PRK01438 12 SDWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDL 81 (480)
T ss_pred cCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCE
Confidence 35788 9999999999999999999998 99998887654211 123445676542 1111124567999
Q ss_pred EEEcc
Q 023490 182 VLLLI 186 (281)
Q Consensus 182 ViLav 186 (281)
|++..
T Consensus 82 Vv~s~ 86 (480)
T PRK01438 82 VVTSP 86 (480)
T ss_pred EEECC
Confidence 99865
No 299
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.49 E-value=0.045 Score=52.25 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=57.6
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..+|..|... .+..+..|.++..+ ..++++.+++||+|+.
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs 214 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQK--GPGANATVTIVHTR-------------------SKNLARHCQRADILIV 214 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhc--ccCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence 47999 999999955 7899999999865 00012567665332 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 215 AvGkp~---~i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 215 AAGVPN---LVK--PEWIKPGATVIDVG 237 (297)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEecC
Confidence 986433 444 24589999998864
No 300
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.46 E-value=0.081 Score=49.81 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=43.0
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCC--cee-cC--CCcCCHHhhcCcCCEEEEcc
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG--FTE-EN--GTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G--~~~-~~--~t~~~~~E~l~~ADVViLav 186 (281)
|+|||.|.+|.++|..|... |. ++.+.+...+.....+.+.. ... .. -...+..+.+++||+|+++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999999887 74 67777765432222222110 000 00 00112257899999999977
Q ss_pred CC
Q 023490 187 SD 188 (281)
Q Consensus 187 P~ 188 (281)
..
T Consensus 75 g~ 76 (300)
T cd00300 75 GA 76 (300)
T ss_pred CC
Confidence 63
No 301
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.46 E-value=0.056 Score=48.72 Aligned_cols=89 Identities=22% Similarity=0.219 Sum_probs=53.9
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC------------------c-ccHHHH---HHCC
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG------------------S-RSFAEA---RAAG 161 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~------------------~-~s~~~A---~~~G 161 (281)
...|.. ++|.|||+|-+|..+|++|... |. ++.+.|+.. . +....+ ++..
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA------GVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN 88 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence 356788 9999999999999999999988 76 455553321 0 000000 1110
Q ss_pred --c--eecCCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHHh
Q 023490 162 --F--TEENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (281)
Q Consensus 162 --~--~~~~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~~ 200 (281)
+ ....... .+.++.++++|+|+.++........+++...
T Consensus 89 p~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~ 133 (228)
T cd00757 89 PDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACV 133 (228)
T ss_pred CCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHH
Confidence 1 1100111 1345678899999999887665556665443
No 302
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.45 E-value=0.13 Score=49.44 Aligned_cols=69 Identities=17% Similarity=0.076 Sum_probs=42.8
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc-------EEEEEecCCcc--cHHHHHHC--Cc-eecCC--CcCCHHhhc
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARAA--GF-TEENG--TLGDIYETI 176 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~-------~Viig~r~~~~--s~~~A~~~--G~-~~~~~--t~~~~~E~l 176 (281)
.||+|||. |.+|.++|..|... ++ ++.+.+..... ....+.+. .. ..... ...+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999998876 53 57677664311 12222211 11 00000 013556889
Q ss_pred CcCCEEEEcc
Q 023490 177 SGSDLVLLLI 186 (281)
Q Consensus 177 ~~ADVViLav 186 (281)
++||+|+++.
T Consensus 78 ~daDvVVitA 87 (323)
T TIGR01759 78 KDVDAALLVG 87 (323)
T ss_pred CCCCEEEEeC
Confidence 9999999954
No 303
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.44 E-value=0.1 Score=51.00 Aligned_cols=89 Identities=20% Similarity=0.280 Sum_probs=64.2
Q ss_pred ccCCCcEEEEEcc----------CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc
Q 023490 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 107 ~l~G~ktIGIIG~----------G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l 176 (281)
.++| ++|+|.|+ -+-...+++.|.+. |.+|.++++.-.. +.....+. ..+++|++
T Consensus 310 ~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~--~~~~~~~~------~~~~~~~~ 374 (411)
T TIGR03026 310 PLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE--EEVKGLPL------IDDLEEAL 374 (411)
T ss_pred cccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh--hhhhhccc------CCCHHHHH
Confidence 5799 99999997 45777888999888 9999988876332 11112211 34788999
Q ss_pred CcCCEEEEccCChhHHH-HHHHHHhcCCCCcEEEEe
Q 023490 177 SGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~-vl~ei~~~mKpgaILi~a 211 (281)
+++|+|++++...+..+ -++++...|++ .+|++.
T Consensus 375 ~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D~ 409 (411)
T TIGR03026 375 KGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVDT 409 (411)
T ss_pred hCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEeC
Confidence 99999999999887665 34566666764 466664
No 304
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.37 E-value=0.054 Score=51.70 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=57.3
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|+.+|..|...+. ..+..|.++..+ ..++++.+++||+|+.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~--~~~aTVtvchs~-------------------T~~l~~~~~~ADIvIs 210 (297)
T PRK14167 153 VDTEG-ADVVVVGRSDIVGKPMANLLIQKAD--GGNATVTVCHSR-------------------TDDLAAKTRRADIVVA 210 (297)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHhcCcc--CCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37999 999999966 789999999875300 003567765332 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++--.. ++.. .++|+|++||+++
T Consensus 211 AvGkp~---~i~~--~~ik~gaiVIDvG 233 (297)
T PRK14167 211 AAGVPE---LIDG--SMLSEGATVIDVG 233 (297)
T ss_pred ccCCcC---ccCH--HHcCCCCEEEEcc
Confidence 876433 4442 4689999999865
No 305
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.34 E-value=0.095 Score=46.60 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=55.8
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcc-----------------cHHH-----HHHCC
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR-----------------SFAE-----ARAAG 161 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~-----------------s~~~-----A~~~G 161 (281)
...|.. ++|.|||+|.+|..++++|... |. ++.+.|...-. ...+ .++..
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lN 88 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALN 88 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 77 46666543110 0000 01111
Q ss_pred ----ceecCCCc-CCHHhhcCcCCEEEEccCChhHHHHHHHHHhcC
Q 023490 162 ----FTEENGTL-GDIYETISGSDLVLLLISDAAQADNYEKIFSCM 202 (281)
Q Consensus 162 ----~~~~~~t~-~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~m 202 (281)
+....... ...++.+++.|+|+.++.+......+++.....
T Consensus 89 p~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~ 134 (197)
T cd01492 89 PRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKL 134 (197)
T ss_pred CCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHc
Confidence 11000011 134567899999999988755544566554433
No 306
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.34 E-value=0.074 Score=50.90 Aligned_cols=74 Identities=11% Similarity=0.005 Sum_probs=42.5
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhcc--CCcEEEEEecCCcccHHHHHHCCcee-----c-C-CCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAK--SDIVVKVGLRKGSRSFAEARAAGFTE-----E-N-GTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~--~G~~Viig~r~~~~s~~~A~~~G~~~-----~-~-~t~~~~~E~l~~ADV 181 (281)
.+|+|||. |.+|.+++..|...- =++ .+.+|.+.++.............+.. . + ....+..+.+++||+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~-~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGD-VFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCc-ccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 47999998 999999999998740 000 02367777764321101111111110 0 0 002456688999999
Q ss_pred EEEcc
Q 023490 182 VLLLI 186 (281)
Q Consensus 182 ViLav 186 (281)
|+++.
T Consensus 82 VI~tA 86 (325)
T cd01336 82 AILVG 86 (325)
T ss_pred EEEeC
Confidence 99854
No 307
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.31 E-value=0.08 Score=50.86 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=52.9
Q ss_pred cEEEEEccCchHHHHHHHHHhh---hh-hccCCcEEE-EEecCCc------ccHHH----HHHCCceec-C--CCcCCHH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVK-VGLRKGS------RSFAE----ARAAGFTEE-N--GTLGDIY 173 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~---~~-~~~~G~~Vi-ig~r~~~------~s~~~----A~~~G~~~~-~--~t~~~~~ 173 (281)
.+|+|||+|+||+.+++.|.+. +. ..+.+++|+ +.+++.. ...+. +.+.+.... . ....+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5799999999999999998754 00 012245543 3443210 11111 222231110 0 0023778
Q ss_pred hhc--CcCCEEEEccCChhHH-HH-HHHHHhcCCCCcEEEE
Q 023490 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (281)
Q Consensus 174 E~l--~~ADVViLavP~~~~~-~v-l~ei~~~mKpgaILi~ 210 (281)
+++ .+.|+|+.++|+..+. +. .+-+...|+.|..|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 887 4689999999975442 11 2222334555665554
No 308
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.31 E-value=0.03 Score=58.42 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=49.0
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCC-ceEEEeccCCCChhhH
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN-IGVIAVCPKGMGPSVR 245 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~-i~VIrvmPntpg~~vr 245 (281)
||||+|+....++++++.++++++++|+|+++++-..++.....++.. .+||..|| +.|++..
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e~~ 64 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRESS 64 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCcch
Confidence 689999999999999999999999999999999954333211134432 46999999 7776653
No 309
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.31 E-value=0.047 Score=44.95 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=27.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~ 149 (281)
++|.|||+|.+|..+|++|... |+ ++.+.|+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCCc
Confidence 7899999999999999999998 87 67777653
No 310
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.30 E-value=0.09 Score=51.24 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=62.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcC--CEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~A--DVViLavP~ 188 (281)
-++||+|+|.|++-.++.|.-. .+ .++.|+ ++++..++..+.|++.++. +-..+.+.||++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~-~~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIP-NPKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCC-CCccccCHHHHhcCCCcCEEEeCCCC
Confidence 4789999999999999999865 21 255543 5566555666778888883 123477999999988 999999999
Q ss_pred hhHHHHHHHHHhc
Q 023490 189 AAQADNYEKIFSC 201 (281)
Q Consensus 189 ~~~~~vl~ei~~~ 201 (281)
..+.++.-..+.+
T Consensus 83 ~qH~evv~l~l~~ 95 (351)
T KOG2741|consen 83 PQHYEVVMLALNK 95 (351)
T ss_pred ccHHHHHHHHHHc
Confidence 8887755444433
No 311
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.27 E-value=0.061 Score=52.75 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=53.1
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecC-CCcCCHH-hhcCcCCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN-GTLGDIY-ETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~-~t~~~~~-E~l~~ADVViLavP 187 (281)
++|+||| .|..|+.+.+.|... .+++|....+..+.-....... .+...+ ....+.+ +.++++|+||+++|
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp 113 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLP 113 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCC
Confidence 7999999 599999999988765 2456655544321110000001 000000 0011222 22589999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.....++... |+.|..||+.++
T Consensus 114 ~~~s~~i~~~----~~~g~~VIDlSs 135 (381)
T PLN02968 114 HGTTQEIIKA----LPKDLKIVDLSA 135 (381)
T ss_pred HHHHHHHHHH----HhCCCEEEEcCc
Confidence 8655555554 346788887655
No 312
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.22 E-value=0.076 Score=50.57 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=53.7
Q ss_pred cccCCCcEEEEEccC---chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCc
Q 023490 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISG 178 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G---~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~A~~~G~~~~~~t~~~~~E~l~~ 178 (281)
..++| .+|++||-| ++..+++..+..+ |++|.+...++- .-.+.+++.|...+ ...++++++++
T Consensus 146 g~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~ 216 (301)
T TIGR00670 146 GRLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDE 216 (301)
T ss_pred CCCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCC
Confidence 35889 999999985 9999999999988 999988876542 11234555564321 24689999999
Q ss_pred CCEEEEc
Q 023490 179 SDLVLLL 185 (281)
Q Consensus 179 ADVViLa 185 (281)
+|+|...
T Consensus 217 aDvvyt~ 223 (301)
T TIGR00670 217 ADVLYVT 223 (301)
T ss_pred CCEEEEC
Confidence 9999884
No 313
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.20 E-value=0.1 Score=50.85 Aligned_cols=71 Identities=21% Similarity=0.181 Sum_probs=48.2
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc---cHHHHHHCCceecCCCcCCHHhhcCc-CCEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEENGTLGDIYETISG-SDLV 182 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~---s~~~A~~~G~~~~~~t~~~~~E~l~~-ADVV 182 (281)
++.| +++.|+|.|.+|.+.|+.|.+. |++|.+.++.... ..+...+.|+....+ ....+.+.+ .|+|
T Consensus 2 ~~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~v 72 (447)
T PRK02472 2 EYQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVICG--SHPLELLDEDFDLM 72 (447)
T ss_pred CcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEeC--CCCHHHhcCcCCEE
Confidence 4678 9999999999999999999999 9999888754321 112234556543110 123344554 8988
Q ss_pred EEcc
Q 023490 183 LLLI 186 (281)
Q Consensus 183 iLav 186 (281)
+...
T Consensus 73 V~s~ 76 (447)
T PRK02472 73 VKNP 76 (447)
T ss_pred EECC
Confidence 8844
No 314
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.20 E-value=0.13 Score=49.37 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=54.5
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
-+|+||| .|-.|..+.+.|... ..+++...... +. +. ..+.+++++++|++|+++|...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~~l~s~--~~--------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELLSIAPD--RR--------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEEEEecc--cc--------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 4799999 899999999999875 12344332211 11 22 1255677789999999999987
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCC
Q 023490 191 QADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~aaG 213 (281)
..++..++. +.|+.|||.++
T Consensus 62 s~~~~~~~~---~~g~~VIDlSa 81 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDAST 81 (310)
T ss_pred HHHHHHHHH---hCCCEEEECCh
Confidence 666666543 36888887665
No 315
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.18 E-value=0.073 Score=53.13 Aligned_cols=73 Identities=25% Similarity=0.247 Sum_probs=49.7
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc-cHHHHHHC--CceecCCCcCCHHhhcCcCCEEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAA--GFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~-s~~~A~~~--G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
++.+ ++|.|||+|..|.++|+.|++. |++|.+.+..... ..+..++. |+....+ ....+.+.++|+|+
T Consensus 4 ~~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g--~~~~~~~~~~d~vv 74 (498)
T PRK02006 4 DLQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFVGG--PFDPALLDGVDLVA 74 (498)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEEeC--CCchhHhcCCCEEE
Confidence 4678 9999999999999999999999 9998877754321 22223333 4332111 12345677899999
Q ss_pred Ec--cCC
Q 023490 184 LL--ISD 188 (281)
Q Consensus 184 La--vP~ 188 (281)
.. +|+
T Consensus 75 ~sp~I~~ 81 (498)
T PRK02006 75 LSPGLSP 81 (498)
T ss_pred ECCCCCC
Confidence 95 565
No 316
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.15 E-value=0.039 Score=53.19 Aligned_cols=65 Identities=22% Similarity=0.181 Sum_probs=43.9
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViL 184 (281)
|++|||||.|.+|..+++.++.. |++|++.+......... ....... ..+.| +.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa~~-~ad~~~~--~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPAAQ-VADEVIV--ADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchhH-hCceEEe--cCCCCHHHHHHHHhcCCEEEe
Confidence 48999999999999999999998 99998887653221111 1111111 01223 5567889998864
No 317
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.09 E-value=0.16 Score=50.09 Aligned_cols=92 Identities=13% Similarity=0.054 Sum_probs=57.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E----~l~~ADVViLavP 187 (281)
..+-|+|+|.+|+.+++.|++. |.++++.+... .+...+.|+..-.+...+.+. -+++||.|+++++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d~---~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPLG---LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECch---hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 5799999999999999999988 88877766442 223333343211122333321 3679999999998
Q ss_pred ChhHHHHHHHHHhcCCCCc-EEEEeC
Q 023490 188 DAAQADNYEKIFSCMKPNS-ILGLSH 212 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpga-ILi~aa 212 (281)
+.+....+-.....+.|+. ++..+.
T Consensus 312 dD~~Nl~ivL~ar~l~p~~kIIa~v~ 337 (393)
T PRK10537 312 NDADNAFVVLAAKEMSSDVKTVAAVN 337 (393)
T ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 8665544333445566654 444333
No 318
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=95.07 E-value=0.077 Score=50.85 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=40.7
Q ss_pred EEEEEcc-CchHHHHHHHHHhhhhhccCCc-------EEEEEecCCcccHHHHHHCCceec-----CC--CcCCHHhhcC
Q 023490 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE-----NG--TLGDIYETIS 177 (281)
Q Consensus 113 tIGIIG~-G~mG~AiA~~Lra~~~~~~~G~-------~Viig~r~~~~s~~~A~~~G~~~~-----~~--t~~~~~E~l~ 177 (281)
+|+|||. |.+|.++|..|... ++ ++.+.++........+.......- .. ...+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 5899999 99999999999875 33 466676542211011111111000 00 0124468899
Q ss_pred cCCEEEEccC
Q 023490 178 GSDLVLLLIS 187 (281)
Q Consensus 178 ~ADVViLavP 187 (281)
+||+|++..-
T Consensus 75 ~aDiVVitAG 84 (324)
T TIGR01758 75 DVDVAILVGA 84 (324)
T ss_pred CCCEEEEcCC
Confidence 9999999543
No 319
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.05 E-value=0.11 Score=47.62 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=53.6
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCc-------------------ccHH---HHHHC-
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS-------------------RSFA---EARAA- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~-------------------~s~~---~A~~~- 160 (281)
...|+. ++|.|||+|-+|..++++|... |. ++.+.+...- +... ...+.
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln 99 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA------GVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN 99 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC
Confidence 466888 9999999999999999999988 65 4555543210 1000 01111
Q ss_pred -Cceec--CCCcC--CHHhhcCcCCEEEEccCChhHHHHHHHHH
Q 023490 161 -GFTEE--NGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 161 -G~~~~--~~t~~--~~~E~l~~ADVViLavP~~~~~~vl~ei~ 199 (281)
.+..+ +.... +.++.++++|+|+.++-.......+++..
T Consensus 100 p~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~ 143 (245)
T PRK05690 100 PHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRAC 143 (245)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHH
Confidence 11110 11111 24567899999999986655545666543
No 320
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.05 E-value=0.094 Score=50.17 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=53.8
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCHH-hhcCcCCEEEEcc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIY-ETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~---~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~-E~l~~ADVViLav 186 (281)
++|+||| .|..|+.+.+.|.+. ++ ++....+..+...... -.|... ...+.+ +.++++|+||+++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~-~~g~~i---~v~d~~~~~~~~vDvVf~A~ 71 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS-FKGKEL---KVEDLTTFDFSGVDIALFSA 71 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee-eCCcee---EEeeCCHHHHcCCCEEEECC
Confidence 7999999 899999999999886 55 3344433321111110 011111 011221 3357899999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|.....++..++. +.|+.|++.++
T Consensus 72 g~g~s~~~~~~~~---~~G~~VIDlS~ 95 (334)
T PRK14874 72 GGSVSKKYAPKAA---AAGAVVIDNSS 95 (334)
T ss_pred ChHHHHHHHHHHH---hCCCEEEECCc
Confidence 9876666666543 35777776554
No 321
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=94.96 E-value=0.087 Score=45.30 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=49.8
Q ss_pred CCCcEEEEEc--cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--cc----H----HHHHHCC--ceecCCCcCCHHh
Q 023490 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RS----F----AEARAAG--FTEENGTLGDIYE 174 (281)
Q Consensus 109 ~G~ktIGIIG--~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--~s----~----~~A~~~G--~~~~~~t~~~~~E 174 (281)
+| +||++|| .+++..+++..+..+ |+++.+....+- .. . +.+.+.| +.. ..+++|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 9999999 389999999999999 999877766541 11 1 1223334 332 468999
Q ss_pred hcCcCCEEEEccCC
Q 023490 175 TISGSDLVLLLISD 188 (281)
Q Consensus 175 ~l~~ADVViLavP~ 188 (281)
+++++|+|..-.-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999999886655
No 322
>PLN02602 lactate dehydrogenase
Probab=94.94 E-value=0.089 Score=51.10 Aligned_cols=66 Identities=21% Similarity=0.225 Sum_probs=42.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC--C------ceecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G------FTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~--G------~~~~~~t~~~~~E~l~~ADV 181 (281)
+||+|||.|++|.++|..|... +. ++.+.+.........+.+. . .... ...+. +.+++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~--~~~dy-~~~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL--ASTDY-AVTAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE--eCCCH-HHhCCCCE
Confidence 5999999999999999999877 65 6667765433222222111 1 1110 01233 45999999
Q ss_pred EEEcc
Q 023490 182 VLLLI 186 (281)
Q Consensus 182 ViLav 186 (281)
|+++.
T Consensus 109 VVitA 113 (350)
T PLN02602 109 CIVTA 113 (350)
T ss_pred EEECC
Confidence 99973
No 323
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.93 E-value=0.16 Score=47.09 Aligned_cols=127 Identities=12% Similarity=0.042 Sum_probs=73.6
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
.+| +++.|+|.|.+|...++.++.. |.++++..+......+.+.+..+.. ..++.-...|+|+=++.
T Consensus 143 ~~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G 209 (308)
T TIGR01202 143 VKV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASG 209 (308)
T ss_pred cCC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCC
Confidence 467 8999999999999999999988 9875555444333344454443321 11112245899999888
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcc-hhhhhhcccCCCCCceEEEeccCCCC--hhhHHhhhhC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCPKGMG--PSVRRLYVQG 251 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~-l~~l~~~~~~~~~~i~VIrvmPntpg--~~vr~~y~~g 251 (281)
... .+++.++.++++..+++.+-.. ...+... ..+.++++++......+. ..+.+++.+|
T Consensus 210 ~~~---~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~g 272 (308)
T TIGR01202 210 DPS---LIDTLVRRLAKGGEIVLAGFYTEPVNFDFV-PAFMKEARLRIAAEWQPGDLHAVRELIESG 272 (308)
T ss_pred CHH---HHHHHHHhhhcCcEEEEEeecCCCcccccc-hhhhcceEEEEecccchhHHHHHHHHHHcC
Confidence 633 4556677788887766443211 0011100 012234566554432222 3566777777
No 324
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.92 E-value=0.16 Score=45.20 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=30.8
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEec
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r 148 (281)
...|+. ++|.|||+|.+|..++++|... |. ++.+.+.
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD~ 51 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVDH 51 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEEC
Confidence 456888 9999999999999999999988 76 4555554
No 325
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.89 E-value=0.11 Score=50.29 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=53.9
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCc---EEEE-E-ecCCcccHHHHHHCCceecCCCcCCH-HhhcCcCCEEEE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKV-G-LRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~---~Vii-g-~r~~~~s~~~A~~~G~~~~~~t~~~~-~E~l~~ADVViL 184 (281)
.+|+||| .|..|+.+.+.|... ++ ++.+ . .+...+.... .|... ...+. .+.++++|+||+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~---~v~~~~~~~~~~~D~vf~ 75 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDY---TVEELTEDSFDGVDIALF 75 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCcee---EEEeCCHHHHcCCCEEEE
Confidence 7899999 799999999999875 54 3322 2 2221111111 12110 01111 245689999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++|.....++..+.. +.|+.||+.++
T Consensus 76 a~p~~~s~~~~~~~~---~~g~~VIDlS~ 101 (344)
T PLN02383 76 SAGGSISKKFGPIAV---DKGAVVVDNSS 101 (344)
T ss_pred CCCcHHHHHHHHHHH---hCCCEEEECCc
Confidence 999886666666543 35888887665
No 326
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.86 E-value=0.074 Score=53.44 Aligned_cols=71 Identities=25% Similarity=0.304 Sum_probs=50.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-H--HHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-F--AEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~--~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
..+.| |+|.|+|+|.-|.+.++.|++. |.+|.+.+.+.... . ......++....+. -..+-..++|+|
T Consensus 3 ~~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~--~~~~~~~~~d~v 73 (448)
T COG0771 3 EDFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS--HDDEDLAEFDLV 73 (448)
T ss_pred ccccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCc--cchhccccCCEE
Confidence 34567 9999999999999999999999 99999998664321 1 12224555432222 122678899999
Q ss_pred EEc
Q 023490 183 LLL 185 (281)
Q Consensus 183 iLa 185 (281)
++.
T Consensus 74 V~S 76 (448)
T COG0771 74 VKS 76 (448)
T ss_pred EEC
Confidence 983
No 327
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.85 E-value=0.2 Score=45.37 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=54.8
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH-HHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~-~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||-|..|..=++.+.+. |.+|++..+.-..... ...+.++.... ...+.++ +..+++|+.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~-~~~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAED-LDDAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhh-hcCceEEEE
Confidence 67999 9999999999999999999888 9988887665422222 23333322111 1224444 445999999
Q ss_pred ccCChhHHH
Q 023490 185 LISDAAQAD 193 (281)
Q Consensus 185 avP~~~~~~ 193 (281)
+|++....+
T Consensus 79 At~d~~ln~ 87 (210)
T COG1648 79 ATDDEELNE 87 (210)
T ss_pred eCCCHHHHH
Confidence 999977654
No 328
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.85 E-value=0.054 Score=51.54 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=42.9
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC----Ccee-cC-CCcCCHHhhcCcCCEEEE
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTE-EN-GTLGDIYETISGSDLVLL 184 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~----G~~~-~~-~t~~~~~E~l~~ADVViL 184 (281)
||+|||.|.+|.++|..|... +. ++.+.+.........+... -+.. .+ .......+.+++||+|++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEE
Confidence 689999999999999998877 65 6777776533222222211 1110 00 001123578999999999
Q ss_pred ccC
Q 023490 185 LIS 187 (281)
Q Consensus 185 avP 187 (281)
+.-
T Consensus 75 taG 77 (307)
T cd05290 75 TAG 77 (307)
T ss_pred CCC
Confidence 654
No 329
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.82 E-value=0.22 Score=45.34 Aligned_cols=93 Identities=17% Similarity=0.126 Sum_probs=60.8
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhh----c--CcCC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET----I--SGSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~----l--~~AD 180 (281)
.+| .++.|+|.|.+|...++.++.. |.+ |++.++. .+..+.+++.|....-. ..+..+. . ...|
T Consensus 119 ~~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~~~~-~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 119 LKG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAADPS-PDRRELALSFGATALAE-PEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCC
Confidence 378 9999999999999999999998 986 5555433 44567788888642100 0111121 1 2479
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++.... .+++.+..++++..++..+
T Consensus 190 ~vid~~G~~~---~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALEFSGATA---AVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEEECCCChH---HHHHHHHHhcCCCEEEEec
Confidence 9998876432 4555566778877665433
No 330
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.82 E-value=0.17 Score=48.65 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=53.2
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
.+|+||| .|-.|+.+.+.|... . +++......... . .. +.++.++++|+||+++|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~~~~s~~~~-------~-~~-------~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELLSIPEAKRK-------D-AA-------ARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEEEEecCCCC-------c-cc-------CchhhhcCCCEEEECCCHH
Confidence 6899999 899999999998876 3 343322222111 0 11 3345667899999999988
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 190 AQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
...++..++. +.|+.|||.++
T Consensus 62 ~s~~~~~~~~---~~g~~VIDlSa 82 (313)
T PRK11863 62 AAREAVALID---NPATRVIDAST 82 (313)
T ss_pred HHHHHHHHHH---hCCCEEEECCh
Confidence 7666666654 35888887654
No 331
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.81 E-value=0.33 Score=45.43 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=63.0
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC---cCCEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLV 182 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l~---~ADVV 182 (281)
.+| .++.|+|.|.+|...++.++.. |. +|++.++.. +..+.+++.|.... +..-.+..+..+ ..|+|
T Consensus 168 ~~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~~-~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 168 LQG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVSP-RSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCCH-HHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEE
Confidence 468 9999999999999999999998 98 465555553 45677888886421 100112333332 37999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+=++... ..++..+..++++-.+++.
T Consensus 240 id~~G~~---~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 240 FEVSGHP---SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 9988753 2455566778888776654
No 332
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=94.80 E-value=0.15 Score=48.77 Aligned_cols=92 Identities=9% Similarity=0.154 Sum_probs=69.5
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP~ 188 (281)
.+|.|.| .|.-|...-+.++++ |-+++.+...+.- ..+-.|+.. +.++.|+-+. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 7899999 899999999999999 9888877765420 012246664 6788888765 7999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCcchh
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~~l~ 217 (281)
....+.+++.... .-..++++++||...
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~e~ 107 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIPQH 107 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCCcc
Confidence 8888888876542 224478899999743
No 333
>PRK05086 malate dehydrogenase; Provisional
Probab=94.76 E-value=0.12 Score=49.21 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=43.1
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCccc---HHHHH-HCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s---~~~A~-~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
|||+|||. |.+|.+++..|...+ +.+.++.+.++..... .+... ............++.+.++++|+|+++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcC
Confidence 68999999 999999998885421 1144666666653210 11111 0001110000135578899999999976
Q ss_pred CC
Q 023490 187 SD 188 (281)
Q Consensus 187 P~ 188 (281)
-.
T Consensus 78 G~ 79 (312)
T PRK05086 78 GV 79 (312)
T ss_pred CC
Confidence 54
No 334
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.74 E-value=0.17 Score=47.90 Aligned_cols=67 Identities=25% Similarity=0.337 Sum_probs=42.7
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc--EEEEEecCC--cccHHHHH-------HCC--ceecCCCcCCHHhhcC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAG--FTEENGTLGDIYETIS 177 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~--~~s~~~A~-------~~G--~~~~~~t~~~~~E~l~ 177 (281)
++|+|||. |.+|..++..|... |. +|++.++.. ......+. ..+ .... ...+ .+.++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~--~~~d-~~~l~ 71 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK--ISSD-LSDVA 71 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEEE--ECCC-HHHhC
Confidence 68999997 99999999999887 65 477777642 11110110 111 1110 0124 45699
Q ss_pred cCCEEEEccC
Q 023490 178 GSDLVLLLIS 187 (281)
Q Consensus 178 ~ADVViLavP 187 (281)
+||+|+++..
T Consensus 72 ~aDiViitag 81 (309)
T cd05294 72 GSDIVIITAG 81 (309)
T ss_pred CCCEEEEecC
Confidence 9999999875
No 335
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.72 E-value=0.067 Score=50.33 Aligned_cols=76 Identities=20% Similarity=0.104 Sum_probs=51.9
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCC--ce---ecCCCcCCHHhhcCcCC
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FT---EENGTLGDIYETISGSD 180 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G--~~---~~~~t~~~~~E~l~~AD 180 (281)
+++| +++.|+|.|-.|++++-.|.+. |. +|.+.+|..++..+.+.+.. +. .......+..+.+.++|
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~d 196 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcC
Confidence 5778 9999999999999999999988 87 68888887655444444321 10 00000112234567899
Q ss_pred EEEEccCCh
Q 023490 181 LVLLLISDA 189 (281)
Q Consensus 181 VViLavP~~ 189 (281)
+||-++|..
T Consensus 197 ivINaTp~G 205 (283)
T PRK14027 197 GVVNATPMG 205 (283)
T ss_pred EEEEcCCCC
Confidence 999999963
No 336
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.70 E-value=0.22 Score=48.03 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=57.4
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC---------------------cccHH---HHHH
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFA---EARA 159 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~---------------------~~s~~---~A~~ 159 (281)
...|.. ++|.|||+|-+|..+|+.|... |. ++.+.++.. .+... ...+
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 456888 9999999999999999999988 76 677776541 01111 0111
Q ss_pred C--Cceec----CCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhc
Q 023490 160 A--GFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSC 201 (281)
Q Consensus 160 ~--G~~~~----~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~ 201 (281)
. .+..+ +-+..+..++++++|+|+.++-......++++....
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~ 139 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQK 139 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 1 11110 001123467899999999998876655577765433
No 337
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.69 E-value=0.11 Score=51.75 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=48.6
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH---HHHHCCceecCCCcCCHHhhcCcCCEEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA---EARAAGFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~---~A~~~G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
.+.| ++|+|+|+|.=|.+.|+.|++. |.+|++.+.+...... ..++.+.... .....+.+.+.|+|+
T Consensus 5 ~~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~d~vV 74 (468)
T PRK04690 5 QLEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLVE---TEASAQRLAAFDVVV 74 (468)
T ss_pred hcCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEEe---CCCChHHccCCCEEE
Confidence 4678 9999999999999999999999 9999888754321111 2222222211 112345678899998
Q ss_pred E--ccCC
Q 023490 184 L--LISD 188 (281)
Q Consensus 184 L--avP~ 188 (281)
. .+|+
T Consensus 75 ~SpgI~~ 81 (468)
T PRK04690 75 KSPGISP 81 (468)
T ss_pred ECCCCCC
Confidence 8 4454
No 338
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.69 E-value=0.33 Score=40.16 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=25.4
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEec
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r 148 (281)
+|.|||+|.+|..++++|... |+ ++.+.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEcC
Confidence 589999999999999999998 77 5666654
No 339
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=94.67 E-value=0.12 Score=49.80 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=51.2
Q ss_pred cccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccH----HHHHHCCceecCCCcCCHHhh
Q 023490 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYET 175 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~----~~A~~~G~~~~~~t~~~~~E~ 175 (281)
..++| ++|++||-+ ++..+++..+..+ |++|.+...+.- .-. +.+++.|...+ ...+++|+
T Consensus 151 g~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea 221 (332)
T PRK04284 151 KPYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT--ITDDIDEG 221 (332)
T ss_pred CCcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence 35789 999999975 8899999999888 999888766531 111 12334563211 14689999
Q ss_pred cCcCCEEEEc
Q 023490 176 ISGSDLVLLL 185 (281)
Q Consensus 176 l~~ADVViLa 185 (281)
++++|+|..-
T Consensus 222 ~~~aDvvy~~ 231 (332)
T PRK04284 222 VKGSDVIYTD 231 (332)
T ss_pred hCCCCEEEEC
Confidence 9999999995
No 340
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=94.66 E-value=0.037 Score=47.27 Aligned_cols=88 Identities=16% Similarity=0.220 Sum_probs=55.6
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
...+| ++|++||+ +.+ +++.|+.. +.++.+.++.... .. -...++. ..+.++++++||+|++.
T Consensus 7 ~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~-~~~~~~~-----~~~~~~~l~~aD~viiT 69 (147)
T PF04016_consen 7 EIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IG-EEPGDVP-----DEDAEEILPWADVVIIT 69 (147)
T ss_dssp CTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG----SSCT-EE-----GGGHHHHGGG-SEEEEE
T ss_pred hhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CC-CCCCcCC-----HHHHHHHHccCCEEEEE
Confidence 55678 99999996 322 77777766 7899999987532 11 1112233 34778999999999985
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
-.- -...-+++++.+.++++.+++.
T Consensus 70 GsT-lvN~Ti~~iL~~~~~~~~vil~ 94 (147)
T PF04016_consen 70 GST-LVNGTIDDILELARNAREVILY 94 (147)
T ss_dssp CHH-CCTTTHHHHHHHTTTSSEEEEE
T ss_pred eee-eecCCHHHHHHhCccCCeEEEE
Confidence 331 1123567788888877766543
No 341
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.65 E-value=0.24 Score=47.41 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=42.0
Q ss_pred EEEEEcc-CchHHHHHHHHHhhhhhccCCc--EEEEEecCCcc--cHHHHHHCC-ceecCCCc-CCHHhhcCcCCEEEEc
Q 023490 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR--SFAEARAAG-FTEENGTL-GDIYETISGSDLVLLL 185 (281)
Q Consensus 113 tIGIIG~-G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~--s~~~A~~~G-~~~~~~t~-~~~~E~l~~ADVViLa 185 (281)
||+|||. |++|.++|-.|... +. ++++.+..... ..+...... ......+- .+..+.+++||+|+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEe
Confidence 6899999 99999999998776 54 67777654311 111111100 11100000 1346899999999986
Q ss_pred cCC
Q 023490 186 ISD 188 (281)
Q Consensus 186 vP~ 188 (281)
.-.
T Consensus 75 aG~ 77 (312)
T TIGR01772 75 AGV 77 (312)
T ss_pred CCC
Confidence 543
No 342
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.65 E-value=0.08 Score=53.91 Aligned_cols=74 Identities=24% Similarity=0.181 Sum_probs=50.0
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~-l~~ADVViLa 185 (281)
+++| +++.|+|.|-+|++++..|.+. |.+|.+.+|..++..+.+.+.+... -...+..+. ...+|+|+-+
T Consensus 376 ~~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~--~~~~~~~~~~~~~~diiINt 446 (529)
T PLN02520 376 PLAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQA--LTLADLENFHPEEGMILANT 446 (529)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCce--eeHhHhhhhccccCeEEEec
Confidence 4778 9999999999999999999998 8898888886544444444433211 001222222 2357888888
Q ss_pred cCCh
Q 023490 186 ISDA 189 (281)
Q Consensus 186 vP~~ 189 (281)
+|..
T Consensus 447 T~vG 450 (529)
T PLN02520 447 TSVG 450 (529)
T ss_pred ccCC
Confidence 8764
No 343
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.60 E-value=0.14 Score=49.03 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=40.5
Q ss_pred EEEEEcc-CchHHHHHHHHHhhhhhccCCc-------EEEEEecCC--cccH----HHHHH-----CCceecCCCcCCHH
Q 023490 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSF----AEARA-----AGFTEENGTLGDIY 173 (281)
Q Consensus 113 tIGIIG~-G~mG~AiA~~Lra~~~~~~~G~-------~Viig~r~~--~~s~----~~A~~-----~G~~~~~~t~~~~~ 173 (281)
+|+|||. |.+|..++..|... ++ ++.+.+... +... +.... .++.. ..+..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i----~~~~~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI----TTDPE 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE----ecChH
Confidence 7999999 99999999988865 32 466666653 1110 00000 01111 13567
Q ss_pred hhcCcCCEEEEcc
Q 023490 174 ETISGSDLVLLLI 186 (281)
Q Consensus 174 E~l~~ADVViLav 186 (281)
+.+++||+|+++.
T Consensus 72 ~~~~~aDiVVitA 84 (323)
T cd00704 72 EAFKDVDVAILVG 84 (323)
T ss_pred HHhCCCCEEEEeC
Confidence 8999999999854
No 344
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.58 E-value=0.19 Score=52.11 Aligned_cols=73 Identities=21% Similarity=0.148 Sum_probs=53.3
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (281)
.| ++|.|||.|..|.+.|..|+.. |++|+++++... ...+...+.|+...-++
T Consensus 309 ~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 309 RS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 58 9999999999999999999998 999999886642 12344566776432111
Q ss_pred ----cCCHHhhcCcCCEEEEccCC
Q 023490 169 ----LGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 169 ----~~~~~E~l~~ADVViLavP~ 188 (281)
..+++++..+.|.|++++--
T Consensus 382 ~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 382 EIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred ccCCcCCHHHHHhcCCEEEEeCCC
Confidence 12455677789999997753
No 345
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=94.58 E-value=0.33 Score=46.17 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=61.5
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-C-CCcCCHHhhcCcCCEEEEcc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~-~t~~~~~E~l~~ADVViLav 186 (281)
.| .+|.|+|.|.+|...++.++.. |.+|++......+..+.+++.|.... + .....+.+.....|+|+=++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 68 8999999999999999999998 98877665554444445567776320 0 00011233344579999887
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
.... .+++.+..++++..++..
T Consensus 256 g~~~---~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 256 SAVH---ALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCHH---HHHHHHHHhcCCcEEEEe
Confidence 6422 455566778887765543
No 346
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.58 E-value=0.12 Score=51.22 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=51.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhh----hccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~----~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViL 184 (281)
.+|||||+|.+|+.+++.|..... ..|.+++|. ++++...+. +.....+.. ...+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~~~~~~~~~----~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD-RGVDLPGIL----LTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc-cCCCCcccc----eeCCHHHHhhCCCCCEEEE
Confidence 579999999999999988865411 122344543 445442211 100001111 1457889885 4799999
Q ss_pred ccCChh-HHHHHHHHHhcCCCCcEEEE
Q 023490 185 LISDAA-QADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 185 avP~~~-~~~vl~ei~~~mKpgaILi~ 210 (281)
+++... +.+.+. ..|+.|..|+.
T Consensus 79 ~tg~~~~~~~~~~---~aL~~GkhVVt 102 (426)
T PRK06349 79 LMGGIEPARELIL---KALEAGKHVVT 102 (426)
T ss_pred CCCCchHHHHHHH---HHHHCCCeEEE
Confidence 987643 223333 33455665554
No 347
>PRK15076 alpha-galactosidase; Provisional
Probab=94.57 E-value=0.047 Score=54.29 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=43.4
Q ss_pred CcEEEEEccCchHHHHHH--HHHhhhhhccCCcEEEEEecCCcccHHHH--------HHCCceecCCCcCCHHhhcCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGFTEENGTLGDIYETISGSD 180 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~--~Lra~~~~~~~G~~Viig~r~~~~s~~~A--------~~~G~~~~~~t~~~~~E~l~~AD 180 (281)
|+||+|||.|++|.+.+. .+... ..-.+.+|++.+...++ .+.+ ...+...+-....+..+++++||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvDid~er-~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMDIDPER-LEESEIVARKLAESLGASAKITATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEECCCHHH-HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCC
Confidence 479999999999866554 44311 01114578777765322 2211 12221110011357789999999
Q ss_pred EEEEccCC
Q 023490 181 LVLLLISD 188 (281)
Q Consensus 181 VViLavP~ 188 (281)
+|+..+-.
T Consensus 78 fVv~ti~v 85 (431)
T PRK15076 78 YVINAIQV 85 (431)
T ss_pred EEeEeeee
Confidence 99997654
No 348
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=94.56 E-value=0.17 Score=48.44 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=51.6
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcc-c-H----HHHHHCC-ceecCCCcCCHHhhcCc
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-S-F----AEARAAG-FTEENGTLGDIYETISG 178 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~-s-~----~~A~~~G-~~~~~~t~~~~~E~l~~ 178 (281)
.++| ++|++||- +++..+++..+..+ |++|.+..++.-. . . +.+++.| +.. ..++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~----~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLSW----EMNLHKAVSH 218 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeEE----EeCHHHHhCC
Confidence 5899 99999996 69999999999888 9999888765421 1 1 2233334 332 4589999999
Q ss_pred CCEEEEcc
Q 023490 179 SDLVLLLI 186 (281)
Q Consensus 179 ADVViLav 186 (281)
+|+|..-+
T Consensus 219 aDvvy~d~ 226 (311)
T PRK14804 219 ADYVYTDT 226 (311)
T ss_pred CCEEEeee
Confidence 99999944
No 349
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=94.56 E-value=0.083 Score=47.88 Aligned_cols=79 Identities=9% Similarity=0.221 Sum_probs=49.6
Q ss_pred CcEEEEEccCchHHHHHHHH--HhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEcc
Q 023490 111 INQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~L--ra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLav 186 (281)
+.++.|||.||+|+|++.-- ... ||+++...+.+.... -.+-.++... ...++++.++ +.|+.+|++
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~V-G~~~~~v~V~--~~d~le~~v~~~dv~iaiLtV 154 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKV-GTKIGDVPVY--DLDDLEKFVKKNDVEIAILTV 154 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHh-CcccCCeeee--chHHHHHHHHhcCccEEEEEc
Confidence 46799999999999998642 233 777766655543211 1112234431 1446677777 789999999
Q ss_pred CChhHHHHHHHH
Q 023490 187 SDAAQADNYEKI 198 (281)
Q Consensus 187 P~~~~~~vl~ei 198 (281)
|-...-++.+.+
T Consensus 155 Pa~~AQ~vad~L 166 (211)
T COG2344 155 PAEHAQEVADRL 166 (211)
T ss_pred cHHHHHHHHHHH
Confidence 975544455543
No 350
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.55 E-value=0.29 Score=45.90 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=62.4
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
.| .++.|+|.|.+|...++.++.. |.+|++..+..+ ..+.+++.|.... ....++.-+..|+++.+...
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~~~-~~~~a~~~Ga~~v---i~~~~~~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRGAA-ARRLALALGAASA---GGAYDTPPEPLDAAILFAPA 233 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCChH-HHHHHHHhCCcee---ccccccCcccceEEEECCCc
Confidence 57 8999999999999999999988 988776666543 4678889987531 11111112357888877665
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEe
Q 023490 189 AAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~a 211 (281)
. ..+.+.++.++++-.+++.
T Consensus 234 ~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 234 G---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred H---HHHHHHHHhhCCCcEEEEE
Confidence 3 3566777888888876543
No 351
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.48 E-value=0.36 Score=46.22 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=76.7
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-CCceecCCCcC-CH----Hhhc--CcC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DI----YETI--SGS 179 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~G~~~~~~t~~-~~----~E~l--~~A 179 (281)
..| .++.|+|.|.||.-.++.++.. |...++..+..+...+.|++ .|......... +. .+.- ..+
T Consensus 167 ~~~-~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 167 RPG-GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCC
Confidence 444 5899999999999999999888 87444444554556778877 44432100001 11 1222 359
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEEEe---CCcc-hhhhhhcccCCCCCceEEEecc-CC-CC-hhhHHhhhhCc
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS---HGFL-LGHLQSIGLDFPKNIGVIAVCP-KG-MG-PSVRRLYVQGK 252 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi~a---aG~~-l~~l~~~~~~~~~~i~VIrvmP-nt-pg-~~vr~~y~~g~ 252 (281)
|++|-++-. ...+++.+..++++-.+++. ++.. ...... .+.+++++..... -. .. +.+-++...||
T Consensus 240 D~vie~~G~---~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~---~~~kel~l~gs~~~~~~~~~~~~~~ll~~g~ 313 (350)
T COG1063 240 DVVIEAVGS---PPALDQALEALRPGGTVVVVGVYGGEDIPLPAGL---VVSKELTLRGSLRPSGREDFERALDLLASGK 313 (350)
T ss_pred CEEEECCCC---HHHHHHHHHHhcCCCEEEEEeccCCccCccCHHH---HHhcccEEEeccCCCCcccHHHHHHHHHcCC
Confidence 999999993 33667777788887765433 2221 111111 3345667776522 22 12 23556666764
No 352
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=94.44 E-value=0.23 Score=47.19 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=51.3
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HHH----HHHCCceecCCCcCCHHhhc
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAE----ARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~~----A~~~G~~~~~~t~~~~~E~l 176 (281)
..++| .+|++||- .+...+++..+..+ |++|.+...+.-.. .+. +.+.|...+ ...++++++
T Consensus 144 g~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 214 (304)
T TIGR00658 144 GKLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAV 214 (304)
T ss_pred CCCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 34889 99999995 78999999999888 99988876553211 111 234453211 146899999
Q ss_pred CcCCEEEEcc
Q 023490 177 SGSDLVLLLI 186 (281)
Q Consensus 177 ~~ADVViLav 186 (281)
+++|+|..-+
T Consensus 215 ~~aDvvy~~~ 224 (304)
T TIGR00658 215 KGADVIYTDV 224 (304)
T ss_pred CCCCEEEEcC
Confidence 9999999853
No 353
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.42 E-value=0.37 Score=43.34 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=31.4
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~ 149 (281)
...|+. ++|.|||+|-+|..+|+.|... |. ++.+.|+.
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD~D 61 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS------GVGNLKLVDFD 61 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCC
Confidence 466888 9999999999999999999988 76 46666544
No 354
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.40 E-value=0.13 Score=49.64 Aligned_cols=89 Identities=21% Similarity=0.178 Sum_probs=50.8
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCc---EEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~---~Viig~r~~~--~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|++|+|+| .|..|+.+.+.|.+. ++ ++.......+ +...... .....+ -.+.++ ++++|+||+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~~~~-~~l~~~---~~~~~~-~~~vD~vFl 72 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVPFAG-KNLRVR---EVDSFD-FSQVQLAFF 72 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeeccCC-cceEEe---eCChHH-hcCCCEEEE
Confidence 36899999 699999999999965 44 2222221111 1111000 011110 012233 589999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++|.....++.++... .|..+||.++
T Consensus 73 a~p~~~s~~~v~~~~~---~G~~VIDlS~ 98 (336)
T PRK05671 73 AAGAAVSRSFAEKARA---AGCSVIDLSG 98 (336)
T ss_pred cCCHHHHHHHHHHHHH---CCCeEEECch
Confidence 9997544455555433 4777887654
No 355
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.39 E-value=0.097 Score=52.58 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=31.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
.+++| ++|.|.|+|+.|+..|+.|.+. |.+|+...+
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsD 263 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSD 263 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 56899 9999999999999999999988 998775533
No 356
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.37 E-value=0.16 Score=46.12 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=48.0
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCC---cCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT---LGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t---~~~~~E~l~~ADVViLavP 187 (281)
|||+||| .|..|..+++-+.+. |++|....|..++. +...+.+..... .....+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~---~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKL---AARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhc---cccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 6899999 799999999999999 99998888875432 111333211111 2234478899999999764
Q ss_pred C
Q 023490 188 D 188 (281)
Q Consensus 188 ~ 188 (281)
.
T Consensus 72 ~ 72 (211)
T COG2910 72 A 72 (211)
T ss_pred C
Confidence 4
No 357
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.36 E-value=0.17 Score=49.60 Aligned_cols=72 Identities=24% Similarity=0.199 Sum_probs=48.8
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHHHH--CCceecCCCcCCHHhhcCcCCEEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARA--AGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A~~--~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
+.| ++|.|+|.|.+|.+.|+.|.+. |++|.+.+...... .+..++ .|+....+ ...++.+.+.|+|+.
T Consensus 3 ~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g--~~~~~~~~~~d~vv~ 73 (445)
T PRK04308 3 FQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFYTG--RLKDALDNGFDILAL 73 (445)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEEeC--CCCHHHHhCCCEEEE
Confidence 678 9999999999999999999999 99988887654321 222222 36543111 112344578999998
Q ss_pred --ccCC
Q 023490 185 --LISD 188 (281)
Q Consensus 185 --avP~ 188 (281)
++|+
T Consensus 74 spgi~~ 79 (445)
T PRK04308 74 SPGISE 79 (445)
T ss_pred CCCCCC
Confidence 4554
No 358
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.27 E-value=0.13 Score=49.07 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=42.5
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc--EEEEEecCCc--ccHHHHHHCC-ceecCC-CcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAG-FTEENG-TLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~--~s~~~A~~~G-~~~~~~-t~~~~~E~l~~ADVViL 184 (281)
+||+|||. |++|.++|-.|... ++ ++++.+.... ...+...... ...... ...++.+.+++||+|++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999999876 64 5666665411 1112111111 111000 01234688999999998
Q ss_pred ccC
Q 023490 185 LIS 187 (281)
Q Consensus 185 avP 187 (281)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 643
No 359
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.27 E-value=0.2 Score=45.95 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=54.1
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCc-------------------ccHH---HHHHC-
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS-------------------RSFA---EARAA- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~-------------------~s~~---~A~~~- 160 (281)
...|++ ++|.|||.|-+|..+|+.|... |. ++.+.|+..- +... ...+.
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~in 91 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA------GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQIN 91 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHC
Confidence 466889 9999999999999999999988 65 4555443210 1010 11111
Q ss_pred -Cceec--CCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHH
Q 023490 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 161 -G~~~~--~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~ 199 (281)
.+..+ +... .+..+.++++|+|+.++-.......+++..
T Consensus 92 p~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~ 135 (240)
T TIGR02355 92 PHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQC 135 (240)
T ss_pred CCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHH
Confidence 11110 0111 124567899999999997765555677544
No 360
>PRK08328 hypothetical protein; Provisional
Probab=94.26 E-value=0.31 Score=44.34 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=30.4
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEe
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~ 147 (281)
...|++ ++|.|||+|-+|..++++|... |. ++.+.|
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~------Gvg~i~lvD 58 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA------GVGRILLID 58 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEc
Confidence 467889 9999999999999999999988 76 455554
No 361
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=94.24 E-value=0.17 Score=48.30 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=49.6
Q ss_pred cccCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
..++| ++|++||- +++..+++..+..+ |+++.+...++-.... . ..+.. ..+++|+++++|+|
T Consensus 152 G~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~~----~~d~~ea~~~aDvv 217 (305)
T PRK00856 152 GRLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYGV----HTDLDEVIEDADVV 217 (305)
T ss_pred CCCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceEE----ECCHHHHhCCCCEE
Confidence 35889 99999996 69999999999998 9998887765422111 0 01222 56899999999999
Q ss_pred EEcc
Q 023490 183 LLLI 186 (281)
Q Consensus 183 iLav 186 (281)
..-.
T Consensus 218 yt~~ 221 (305)
T PRK00856 218 MMLR 221 (305)
T ss_pred EECC
Confidence 8844
No 362
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=94.21 E-value=0.19 Score=48.71 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=50.9
Q ss_pred ccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHH----HHHHCCceecCCCcCCHHhhc
Q 023490 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFA----EARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 107 ~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~----~A~~~G~~~~~~t~~~~~E~l 176 (281)
.++| .+|++||-+ ++..+++..+..+ |++|.+...+.-. ..+ .+++.|...+ ...+++|++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999976 7899999999888 9998877655311 111 2333453211 146899999
Q ss_pred CcCCEEEEcc
Q 023490 177 SGSDLVLLLI 186 (281)
Q Consensus 177 ~~ADVViLav 186 (281)
+++|+|..-.
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
No 363
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.20 E-value=0.24 Score=49.29 Aligned_cols=73 Identities=25% Similarity=0.217 Sum_probs=52.8
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (281)
.| ++|.|||.|..|-+.|..|+.. |++|+++++... ...+..++.|+...-++
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 68 9999999999999999999998 999988876531 12345667786542111
Q ss_pred c----CCHHhhcCcCCEEEEccCC
Q 023490 169 L----GDIYETISGSDLVLLLISD 188 (281)
Q Consensus 169 ~----~~~~E~l~~ADVViLavP~ 188 (281)
. ...+++..+.|.|++++--
T Consensus 213 ~v~~~~~~~~~~~~~D~vilAtGa 236 (467)
T TIGR01318 213 EVGRDISLDDLLEDYDAVFLGVGT 236 (467)
T ss_pred EeCCccCHHHHHhcCCEEEEEeCC
Confidence 1 1344555689999998754
No 364
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=94.15 E-value=0.24 Score=47.43 Aligned_cols=93 Identities=11% Similarity=0.050 Sum_probs=52.6
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCC-cEEEEEecCC-cccHHHHHHCCc------e--ecCCCcCC-HHhhcCcC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKG-SRSFAEARAAGF------T--EENGTLGD-IYETISGS 179 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~-~~s~~~A~~~G~------~--~~~~t~~~-~~E~l~~A 179 (281)
++|+|+| .|.||+.+++.|... . +++....+.. +..........+ . ..+-.+.+ .++.+.++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 4799999 599999999988765 4 5655442221 110111111110 0 00000111 12356899
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|+|++++|.....++..++.. .|..+++.+|
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg 105 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNAS 105 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence 999999999877666654433 4777776555
No 365
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.11 E-value=0.44 Score=44.82 Aligned_cols=91 Identities=22% Similarity=0.235 Sum_probs=58.8
Q ss_pred CCCcEEEEEccCchHHHHHHHHHh-hhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra-~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
+| .++.|+|.|.+|...++.++. . | .+|++.++.. +..+.+++.+... ...+..+-. ..|+|+=++
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~~-~k~~~a~~~~~~~---~~~~~~~~~-g~d~viD~~ 230 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKHQ-EKLDLFSFADETY---LIDDIPEDL-AVDHAFECV 230 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCcH-hHHHHHhhcCcee---ehhhhhhcc-CCcEEEECC
Confidence 57 899999999999998888875 4 4 4676666553 3345566555432 011111211 479999888
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
........+++.+..++++-.+++.
T Consensus 231 G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 231 GGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCccHHHHHHHHHhCcCCcEEEEE
Confidence 7432334677778889998766543
No 366
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=94.10 E-value=0.19 Score=48.56 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=50.7
Q ss_pred ccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCccc----H----HHHHHCCceecCCCcCCHHhhc
Q 023490 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----F----AEARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 107 ~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~----~~A~~~G~~~~~~t~~~~~E~l 176 (281)
.++| .+|++||-+ ++..+++..+..+ |++|.++..+.-.. . +.+++.|...+ ...++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 5889 999999986 6888888888888 99988876553211 1 12334453221 146899999
Q ss_pred CcCCEEEEcc
Q 023490 177 SGSDLVLLLI 186 (281)
Q Consensus 177 ~~ADVViLav 186 (281)
+++|+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999843
No 367
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.03 E-value=0.25 Score=45.85 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=47.6
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~---~~~E~l~~ADVViLavP 187 (281)
|+|.|+| .|.+|+.+++.|.+. |++|++..|...+. ......++....+... ++.++++++|+|+-+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 699999999999999 99998888764321 1112234432111222 35677999999998654
No 368
>PLN00106 malate dehydrogenase
Probab=94.00 E-value=0.16 Score=48.92 Aligned_cols=131 Identities=10% Similarity=0.103 Sum_probs=74.1
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc--EEEEEecCCccc--HHHHHHC-CceecC-CCcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS--FAEARAA-GFTEEN-GTLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s--~~~A~~~-G~~~~~-~t~~~~~E~l~~ADVViL 184 (281)
+||+|||. |++|.++|..|... +. ++.+.+....+. .+..... .....+ ....+..+.+++||+|++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 79999999 99999999999865 44 677776543111 1111000 011111 012356789999999999
Q ss_pred ccCC--h--hH-HHHH-------HHHHhcC---CCCcEEEEeCC-cc-----hh-hhhhcccCCCCCceEEEeccCCCCh
Q 023490 185 LISD--A--AQ-ADNY-------EKIFSCM---KPNSILGLSHG-FL-----LG-HLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 185 avP~--~--~~-~~vl-------~ei~~~m---KpgaILi~aaG-~~-----l~-~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
+.-. . .. .+++ .++.+.+ .|+++|+++.- +. +. .+.. ...+|+ .+|+... ..-..
T Consensus 93 tAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~-~s~~p~-~~viG~~-~LDs~ 169 (323)
T PLN00106 93 PAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKK-AGVYDP-KKLFGVT-TLDVV 169 (323)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHH-cCCCCc-ceEEEEe-cchHH
Confidence 6432 1 11 1222 2333333 46777765543 22 22 2222 123444 4788886 66666
Q ss_pred hhHHhhhhC
Q 023490 243 SVRRLYVQG 251 (281)
Q Consensus 243 ~vr~~y~~g 251 (281)
.+|++|-+.
T Consensus 170 Rl~~~lA~~ 178 (323)
T PLN00106 170 RANTFVAEK 178 (323)
T ss_pred HHHHHHHHH
Confidence 788888776
No 369
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.00 E-value=0.17 Score=51.41 Aligned_cols=75 Identities=20% Similarity=0.214 Sum_probs=52.3
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC--------------------cccHHHHHHCCceecC
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEEN 166 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~--------------------~~s~~~A~~~G~~~~~ 166 (281)
.-.| ++|.|||.|.+|-+.|..|+.. |++|++.++.. ....+.+++.|+...-
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 3578 9999999999999999999998 99998887431 1123456778864321
Q ss_pred CC-c-C--CHHhhcCcCCEEEEccCC
Q 023490 167 GT-L-G--DIYETISGSDLVLLLISD 188 (281)
Q Consensus 167 ~t-~-~--~~~E~l~~ADVViLavP~ 188 (281)
++ . . +.+++-...|+|++++-.
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGA 232 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCC
Confidence 11 1 1 234445568999998764
No 370
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=93.92 E-value=0.3 Score=46.25 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=40.9
Q ss_pred EEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCC---------ceecCCCcCCHHhhcCcCCEEEE
Q 023490 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG---------FTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 116 IIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G---------~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|||.|.+|.++|..|... ++ ++.+.+.........+.+.. ... ..+..+.+++||+|++
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i----~~~~~~~~~daDivVi 70 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKI----RSGDYSDCKDADLVVI 70 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEE----ecCCHHHHCCCCEEEE
Confidence 799999999999999877 65 67777765432222222111 111 1234578999999999
Q ss_pred ccC
Q 023490 185 LIS 187 (281)
Q Consensus 185 avP 187 (281)
..-
T Consensus 71 tag 73 (299)
T TIGR01771 71 TAG 73 (299)
T ss_pred CCC
Confidence 654
No 371
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.91 E-value=0.64 Score=42.68 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=56.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~~~~t~~~~~E~l~~ADVViL 184 (281)
-+++| +++.|||.|.+|..=++.|.++ |.+|.+....-........+.| +......+ +. +-++.+++|+.
T Consensus 21 l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r~~-~~-~dl~g~~LVia 91 (223)
T PRK05562 21 LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKGNY-DK-EFIKDKHLIVI 91 (223)
T ss_pred EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-Ch-HHhCCCcEEEE
Confidence 46789 9999999999999988888888 9888877655333232222222 33211111 22 34789999999
Q ss_pred ccCChhHHHHHHH
Q 023490 185 LISDAAQADNYEK 197 (281)
Q Consensus 185 avP~~~~~~vl~e 197 (281)
+|.+.+..+.+.+
T Consensus 92 ATdD~~vN~~I~~ 104 (223)
T PRK05562 92 ATDDEKLNNKIRK 104 (223)
T ss_pred CCCCHHHHHHHHH
Confidence 9998776654443
No 372
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.89 E-value=0.24 Score=47.89 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=53.9
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC-------------------cccHHHHH---HC-
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---AA- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~-------------------~~s~~~A~---~~- 160 (281)
...|+. ++|.|||+|-+|..++++|... |. ++.+.++.. .+....++ +.
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 466888 9999999999999999999887 66 455555431 01111111 11
Q ss_pred -Cceec--CCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHH
Q 023490 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 161 -G~~~~--~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~ 199 (281)
.+..+ .... .+..+.++++|+|+.++-......++++..
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11110 0011 123578899999999987655555666543
No 373
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=93.87 E-value=0.23 Score=48.05 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=51.7
Q ss_pred cccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HH----HHHHCCceecCCCcCCHHhh
Q 023490 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FA----EARAAGFTEENGTLGDIYET 175 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~----~A~~~G~~~~~~t~~~~~E~ 175 (281)
..++| .||++||-+ ++..+++..+..+ |++|.+..++.-.. .+ .++..|...+ ...+++++
T Consensus 151 g~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea 221 (331)
T PRK02102 151 GPLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEA 221 (331)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence 35889 999999987 8899999998888 99988776553211 11 2334453321 14689999
Q ss_pred cCcCCEEEEcc
Q 023490 176 ISGSDLVLLLI 186 (281)
Q Consensus 176 l~~ADVViLav 186 (281)
++++|+|..-+
T Consensus 222 ~~~aDvvyt~~ 232 (331)
T PRK02102 222 VKGADVIYTDV 232 (331)
T ss_pred hCCCCEEEEcC
Confidence 99999999953
No 374
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.87 E-value=0.11 Score=50.56 Aligned_cols=128 Identities=20% Similarity=0.265 Sum_probs=77.3
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh-------hc----
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-------TI---- 176 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E-------~l---- 176 (281)
=+| .+++|+|+|..|.+++++.|+. |..-+|+.+-+.+..+.+++.|+++ +.++.+ ++
T Consensus 191 ~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe----~iNp~d~~~~i~evi~EmT 259 (375)
T KOG0022|consen 191 EPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE----FINPKDLKKPIQEVIIEMT 259 (375)
T ss_pred CCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce----ecChhhccccHHHHHHHHh
Confidence 367 9999999999999999999999 9866788888777789999999885 333332 22
Q ss_pred -CcCCEEEEccCChhHHHHHHHHHhcCCC--CcEE--EE-eCCcch--hhhhhcccCCCC--CceEE-EeccCCCChhhH
Q 023490 177 -SGSDLVLLLISDAAQADNYEKIFSCMKP--NSIL--GL-SHGFLL--GHLQSIGLDFPK--NIGVI-AVCPKGMGPSVR 245 (281)
Q Consensus 177 -~~ADVViLavP~~~~~~vl~ei~~~mKp--gaIL--i~-aaG~~l--~~l~~~~~~~~~--~i~VI-rvmPntpg~~vr 245 (281)
-..|+=+=|+-.. +++.+.+..-++ |..+ .+ .+|-.+ .-++ +..+. .-.++ ..-|+.-=|-+.
T Consensus 260 dgGvDysfEc~G~~---~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~---l~~GR~~~Gs~FGG~K~~~~iP~lV 333 (375)
T KOG0022|consen 260 DGGVDYSFECIGNV---STMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQ---LVTGRTWKGSAFGGFKSKSDIPKLV 333 (375)
T ss_pred cCCceEEEEecCCH---HHHHHHHHHhhcCCCeEEEEEecCCCcccccchhh---hccccEEEEEecccccchhhhhHHH
Confidence 1356666555542 234433333333 4433 23 233222 1111 11111 01112 346677777888
Q ss_pred HhhhhCc
Q 023490 246 RLYVQGK 252 (281)
Q Consensus 246 ~~y~~g~ 252 (281)
..|.+|+
T Consensus 334 ~~y~~~~ 340 (375)
T KOG0022|consen 334 KDYMKKK 340 (375)
T ss_pred HHHHhCc
Confidence 8888874
No 375
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=93.78 E-value=0.52 Score=42.13 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=48.0
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-CCceecCCCcCC----HHhhc-Cc
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG 178 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~G~~~~~~t~~~----~~E~l-~~ 178 (281)
+...+ |+|.|+| .|.+|+.+++.|.+. |++|+...|...+......+ .++....+...+ +.+.+ ..
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 34567 9999999 599999999999998 99988777664321111111 122211111222 33455 58
Q ss_pred CCEEEEccCC
Q 023490 179 SDLVLLLISD 188 (281)
Q Consensus 179 ADVViLavP~ 188 (281)
.|+|+.+.+.
T Consensus 86 ~d~vi~~~g~ 95 (251)
T PLN00141 86 SDAVICATGF 95 (251)
T ss_pred CCEEEECCCC
Confidence 9999987654
No 376
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.78 E-value=0.32 Score=38.91 Aligned_cols=83 Identities=25% Similarity=0.284 Sum_probs=48.4
Q ss_pred ccCchHHHHHHHHHhhhhhccCCcEEE-EEecC--CcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCChhHH
Q 023490 118 GWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRK--GSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (281)
Q Consensus 118 G~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~--~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~~~~~ 192 (281)
|+|+||+.+++.|...-.. .+++|. +++++ -.... .....+... ..++++++. +.|+|+=|++.....
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDW-AASFPDEAF----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTH-HHHHTHSCE----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhh-hhhcccccc----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999886111 245543 44544 11111 111122221 458899988 999999998887777
Q ss_pred HHHHHHHhcCCCCcEEEE
Q 023490 193 DNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 193 ~vl~ei~~~mKpgaILi~ 210 (281)
+.+.+.+. .|.-|+.
T Consensus 74 ~~~~~~L~---~G~~VVt 88 (117)
T PF03447_consen 74 EYYEKALE---RGKHVVT 88 (117)
T ss_dssp HHHHHHHH---TTCEEEE
T ss_pred HHHHHHHH---CCCeEEE
Confidence 77666544 5665543
No 377
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.77 E-value=0.28 Score=47.17 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=52.5
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH-HHHHHCCc-------------eecCCCcCCHHhhc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGF-------------TEENGTLGDIYETI 176 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~-~~A~~~G~-------------~~~~~t~~~~~E~l 176 (281)
++|+|+| .|.+|+.+++.|.+. ..+++....+..+..- ......++ ..+ ..+. +.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~-~~~ 74 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVV---STDP-EAV 74 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcChhhcCCcccccccccccccccccccceEEE---eCCH-HHh
Confidence 7899998 899999999999875 1346554423211000 00000111 100 1133 345
Q ss_pred CcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.++|+|++++|.....++.+++. +.|..+++.+|
T Consensus 75 ~~~DvVf~a~p~~~s~~~~~~~~---~~G~~vIDls~ 108 (349)
T PRK08664 75 DDVDIVFSALPSDVAGEVEEEFA---KAGKPVFSNAS 108 (349)
T ss_pred cCCCEEEEeCChhHHHHHHHHHH---HCCCEEEECCc
Confidence 89999999999876655554433 24676776555
No 378
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.73 E-value=0.17 Score=47.41 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=49.0
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEccC
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLIS 187 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~-l~~ADVViLavP 187 (281)
+ +++.|+|.|-.+++++..|... |. +|.+.+|..++..+.+...+... . ++. ...+|+||-++|
T Consensus 122 ~-~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~~-----~--~~~~~~~~dlvINaTp 187 (272)
T PRK12550 122 D-LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYEW-----R--PDLGGIEADILVNVTP 187 (272)
T ss_pred C-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCcc-----h--hhcccccCCEEEECCc
Confidence 5 7899999999999999999988 87 58899998665555555544321 1 111 256899999999
Q ss_pred Ch
Q 023490 188 DA 189 (281)
Q Consensus 188 ~~ 189 (281)
..
T Consensus 188 ~G 189 (272)
T PRK12550 188 IG 189 (272)
T ss_pred cc
Confidence 64
No 379
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.69 E-value=0.44 Score=46.20 Aligned_cols=89 Identities=11% Similarity=0.086 Sum_probs=55.3
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC-------------------CcccHHHHHHC-----
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARAA----- 160 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~-------------------~~~s~~~A~~~----- 160 (281)
..|++ ++|.|||+|-+|..+++.|... |. ++.+.++. ..+....+++.
T Consensus 131 ~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np 203 (376)
T PRK08762 131 RRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP 203 (376)
T ss_pred HHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC
Confidence 56888 9999999999999999999988 76 56666654 11111111111
Q ss_pred Cceec--CCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHHhc
Q 023490 161 GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFSC 201 (281)
Q Consensus 161 G~~~~--~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~ 201 (281)
.+..+ .... .+.++.++++|+|+.++-.......+++....
T Consensus 204 ~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~ 248 (376)
T PRK08762 204 DVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVK 248 (376)
T ss_pred CCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH
Confidence 11110 0011 12456788999999988765544466654433
No 380
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.68 E-value=0.29 Score=47.79 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=56.1
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC-------------------cccHHHH---HHC-
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEA---RAA- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~-------------------~~s~~~A---~~~- 160 (281)
...|.+ ++|.|||+|-+|..+++.|... |. ++.+.++.. .+....+ .+.
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 76 566665431 0100001 111
Q ss_pred -Cce--ecCCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHHh
Q 023490 161 -GFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (281)
Q Consensus 161 -G~~--~~~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~~ 200 (281)
.+. ...... .+.++.++++|+|+-|+-......+++++..
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~ 153 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE 153 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 111 100111 2345789999999888877666567776443
No 381
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.66 E-value=0.52 Score=41.00 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=25.8
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~ 149 (281)
+|.|||+|-+|..+++.|... |. ++.+.|+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCC
Confidence 589999999999999999888 76 46666654
No 382
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=93.64 E-value=0.25 Score=47.48 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=53.0
Q ss_pred cCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HHH----HHHCC--ceecCCCcCCHHhhc
Q 023490 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAE----ARAAG--FTEENGTLGDIYETI 176 (281)
Q Consensus 108 l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~~----A~~~G--~~~~~~t~~~~~E~l 176 (281)
|+| +|+..||=| ||+.++....... ||++.+..+++-.. .+. +++.| +.. ..|++|++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 889 999999966 8999999988888 99999887664321 222 33344 443 45899999
Q ss_pred CcCCEEEEccCC
Q 023490 177 SGSDLVLLLISD 188 (281)
Q Consensus 177 ~~ADVViLavP~ 188 (281)
++||+|..=+..
T Consensus 220 ~gADvvyTDvWv 231 (310)
T COG0078 220 KGADVVYTDVWV 231 (310)
T ss_pred CCCCEEEecCcc
Confidence 999999986654
No 383
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=93.58 E-value=0.28 Score=47.50 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=51.0
Q ss_pred ccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCccc----H----HHHHHCCceecCCCcCCHHhhc
Q 023490 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----F----AEARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 107 ~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~----~~A~~~G~~~~~~t~~~~~E~l 176 (281)
.++| .+|++||-+ ++..+++..+..+ |+++.+...+.-.. . +.+++.|...+ ...+++|++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 5889 999999976 7899999999888 99988876653211 1 22344553221 246899999
Q ss_pred CcCCEEEEc
Q 023490 177 SGSDLVLLL 185 (281)
Q Consensus 177 ~~ADVViLa 185 (281)
+++|+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999985
No 384
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=93.54 E-value=0.13 Score=48.97 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=68.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccC-CcEEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~-G~~Viig~r~~~~s~~~A~~~G-----~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.-+.|+|.|.++........+.. + =-+|.|+++..+...+.|.... +..+-....+.+++++.+|||+-+
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~----pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~a 214 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLI----PSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGA 214 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhc----ccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEec
Confidence 45789999999999888776651 1 1278999998876666666221 111112256788999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
++-.+- ++. ...+|||+.|-++++|+.
T Consensus 215 tlsteP--ilf--gewlkpgthIdlVGsf~p 241 (333)
T KOG3007|consen 215 TLSTEP--ILF--GEWLKPGTHIDLVGSFKP 241 (333)
T ss_pred cccCCc--eee--eeeecCCceEeeeccCCc
Confidence 986431 221 246899999999999985
No 385
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.54 E-value=0.52 Score=46.79 Aligned_cols=95 Identities=14% Similarity=0.048 Sum_probs=65.8
Q ss_pred cccCCCcEEEEEcc----------CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH-Hh
Q 023490 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YE 174 (281)
Q Consensus 106 ~~l~G~ktIGIIG~----------G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~-~E 174 (281)
..++| ++|+|.|+ .+-+..+++.|++. |.+|.++|..-.. .+..+..+.. .. ..
T Consensus 310 ~~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~~-~~~~~~~~~~-------~~~~~ 374 (425)
T PRK15182 310 INVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVDA-EEVRREYGII-------PVSEV 374 (425)
T ss_pred CCCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCCh-hHHHHhcCcc-------cchhh
Confidence 35789 99999998 56788899999988 9999988765211 1111223332 11 23
Q ss_pred hcCcCCEEEEccCChhHHHH-HHHHHhcCCCCcEEEEeCCcc
Q 023490 175 TISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 175 ~l~~ADVViLavP~~~~~~v-l~ei~~~mKpgaILi~aaG~~ 215 (281)
.++++|+|++++.-.+..++ ++++...|+...+|++..++.
T Consensus 375 ~~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~ 416 (425)
T PRK15182 375 KSSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVL 416 (425)
T ss_pred hhcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCC
Confidence 47789999999998776653 456666677556888877654
No 386
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.53 E-value=0.23 Score=52.83 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=47.8
Q ss_pred CcEEEEEccCchHHHH-HHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 111 INQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 111 ~ktIGIIG~G~mG~Ai-A~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+++|.|||+|..|.+. |+.|++. |++|.+.+.......+..++.|+... .....+.+.++|+|++.
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 3579999999999998 9999999 99998877654333334456677642 12234667889999873
No 387
>PLN03075 nicotianamine synthase; Provisional
Probab=93.51 E-value=0.3 Score=46.63 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=66.7
Q ss_pred hcccchhhhhcCCCccccc--ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH----
Q 023490 86 LANRDEFIVRGGRDLFKLL--PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---- 159 (281)
Q Consensus 86 ~~~~~e~~vr~G~W~f~~~--~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~---- 159 (281)
|.+|.+| .+=++=++.+. ...... ++|..||.|..|-+-.-.++..+ .+-.+ ++.+.++...+.|++
T Consensus 99 Fpy~~nY-~~L~~lE~~~L~~~~~~~p-~~VldIGcGpgpltaiilaa~~~----p~~~~-~giD~d~~ai~~Ar~~~~~ 171 (296)
T PLN03075 99 FPYYNNY-LKLSKLEFDLLSQHVNGVP-TKVAFVGSGPLPLTSIVLAKHHL----PTTSF-HNFDIDPSANDVARRLVSS 171 (296)
T ss_pred CCchHHH-HHHHHHHHHHHHHhhcCCC-CEEEEECCCCcHHHHHHHHHhcC----CCCEE-EEEeCCHHHHHHHHHHhhh
Confidence 5666666 66554444331 112256 99999999998875544443321 12244 455554544444443
Q ss_pred -CCceec-CCCcCCHHh---hcCcCCEEEEccC----ChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 160 -AGFTEE-NGTLGDIYE---TISGSDLVLLLIS----DAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 160 -~G~~~~-~~t~~~~~E---~l~~ADVViLavP----~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
.|+... .-...+..+ -..+-|+|++.+= .....++++.+.+.|+||.+|++-
T Consensus 172 ~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 172 DPDLSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred ccCccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 221100 000122222 2468999999841 123456899999999999988754
No 388
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=93.51 E-value=0.29 Score=48.49 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=50.2
Q ss_pred ccCCCcEEEEEcc-----C---chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcC
Q 023490 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLG 170 (281)
Q Consensus 107 ~l~G~ktIGIIG~-----G---~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~----A~~~G~~~~~~t~~ 170 (281)
.++| +||+|+|- | ++..+++..+..+ |++|.+...++- +-.+. +++.|...+ ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 3788 89999985 4 6778999988888 999988876632 11122 344453221 146
Q ss_pred CHHhhcCcCCEEEEcc
Q 023490 171 DIYETISGSDLVLLLI 186 (281)
Q Consensus 171 ~~~E~l~~ADVViLav 186 (281)
+++|+++++|+|..-+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999874
No 389
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.49 E-value=0.31 Score=47.63 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=45.7
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
++.+ ++|.|||+|..|.+.++.|++. |++|...+...........+.|+....+ ....+.++..|+|+.
T Consensus 3 ~~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~l~~g~~~~~~--~~~~~~~~~~d~vv~ 71 (438)
T PRK03806 3 DYQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDKLPENVERHTG--SLNDEWLLAADLIVA 71 (438)
T ss_pred ccCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHHHhcCCEEEeC--CCCHHHhcCCCEEEE
Confidence 4667 9999999999999999999988 9998877754332111112336543111 122345678897776
No 390
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.47 E-value=0.22 Score=49.61 Aligned_cols=86 Identities=20% Similarity=0.168 Sum_probs=59.9
Q ss_pred cCCCcEEEEEccC----------chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHHhh
Q 023490 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (281)
Q Consensus 108 l~G~ktIGIIG~G----------~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~--G~~~~~~t~~~~~E~ 175 (281)
|+| |+|||.|+- +-...++..|.+. |.+|+++++... +.+... ++.. ..+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~a~---~~~~~~~~~~~~----~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPVAM---ENAFRNFPDVEL----ESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECchhh---HHHHhcCCCceE----eCCHHHH
Confidence 899 999999973 3355677777777 999998887632 222222 2333 5689999
Q ss_pred cCcCCEEEEccCChhHHHHH-HHHHhcCCCCcEEEE
Q 023490 176 ISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGL 210 (281)
Q Consensus 176 l~~ADVViLavP~~~~~~vl-~ei~~~mKpgaILi~ 210 (281)
+++||+|++++-..+..++= +.+ .|| +.+|++
T Consensus 374 ~~~aDaivi~tew~ef~~~d~~~~--~m~-~~~v~D 406 (414)
T COG1004 374 LKGADAIVINTEWDEFRDLDFEKL--LMK-TPVVID 406 (414)
T ss_pred HhhCCEEEEeccHHHHhccChhhh--hcc-CCEEEe
Confidence 99999999999987766542 333 565 445554
No 391
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=93.46 E-value=0.3 Score=46.46 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=52.4
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HHH-HHHCCceecCCCcCCHHhhcCcC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAE-ARAAGFTEENGTLGDIYETISGS 179 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~~-A~~~G~~~~~~t~~~~~E~l~~A 179 (281)
..++| .+|++||- ++...+++..+..+ |++|.+...+.-.. .+. +++.|...+ ...+++|+++++
T Consensus 148 g~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a 218 (304)
T PRK00779 148 GSLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGA 218 (304)
T ss_pred CCcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCC
Confidence 45889 99999996 79999999999988 99988876653221 111 455563221 146899999999
Q ss_pred CEEEEc
Q 023490 180 DLVLLL 185 (281)
Q Consensus 180 DVViLa 185 (281)
|+|..-
T Consensus 219 Dvvy~~ 224 (304)
T PRK00779 219 DVVYTD 224 (304)
T ss_pred CEEEec
Confidence 999985
No 392
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=93.45 E-value=0.17 Score=49.19 Aligned_cols=80 Identities=16% Similarity=0.040 Sum_probs=48.7
Q ss_pred cEEEEEccCchHHHH-HHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCce---ec-CC-C---------c--CCHH-
Q 023490 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---EE-NG-T---------L--GDIY- 173 (281)
Q Consensus 112 ktIGIIG~G~mG~Ai-A~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~---~~-~~-t---------~--~~~~- 173 (281)
|+|.++|.|+||++. ...|... |++|++.+.... ..+.-.+.|.- .. .+ . . .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~~~~-~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDVNQE-LIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEECCHH-HHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 689999999999966 6667666 888877775432 33444444531 11 11 0 0 0112
Q ss_pred --hhcCcCCEEEEccCChhHHHHHHHH
Q 023490 174 --ETISGSDLVLLLISDAAQADNYEKI 198 (281)
Q Consensus 174 --E~l~~ADVViLavP~~~~~~vl~ei 198 (281)
+.+.++|+|++.++......++..+
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l 100 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLI 100 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHH
Confidence 2455889999999976544444433
No 393
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.43 E-value=0.3 Score=50.57 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=51.9
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (281)
.| ++|.|||.|..|-+.|..|+.. |++|+++++... +..+..++.|+...-++
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 398 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC 398 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence 58 9999999999999999999998 999999886532 01334556676532111
Q ss_pred ----cCCHHhhcCcCCEEEEccC
Q 023490 169 ----LGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 169 ----~~~~~E~l~~ADVViLavP 187 (281)
..+.+++..+.|.|++++-
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCC
Confidence 1244566678999999774
No 394
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=93.41 E-value=0.95 Score=44.43 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=81.5
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---------HhhcC-c
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---------YETIS-G 178 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~---------~E~l~-~ 178 (281)
.| .+++|+|+|-+|-+..+.++.. |..-+|+.+.+....+.|++.|.+.- ..+. .++-. .
T Consensus 185 ~G-~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~~---vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 185 PG-DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATHF---VNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CC-CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCcee---ecchhhhhHHHHHHHhcCCC
Confidence 56 8999999999999999999998 88767777777777889999998741 2221 23344 7
Q ss_pred CCEEEEccCChhHHHHHHHHHhcC-CCCcEEEE-e--CCcchhhhhhcccCCCC---CceEEEeccCCCChhhHHhhhhC
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCM-KPNSILGL-S--HGFLLGHLQSIGLDFPK---NIGVIAVCPKGMGPSVRRLYVQG 251 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~m-KpgaILi~-a--aG~~l~~l~~~~~~~~~---~i~VIrvmPntpg~~vr~~y~~g 251 (281)
+|..|-++-... ++..-+... +-|..+++ . +|-.+. +....+.... ..-+=.+-|..-=|.+.++|.+|
T Consensus 255 ~d~~~e~~G~~~---~~~~al~~~~~~G~~v~iGv~~~~~~i~-~~~~~lv~gr~~~Gs~~G~~~p~~diP~lv~~y~~G 330 (366)
T COG1062 255 ADYAFECVGNVE---VMRQALEATHRGGTSVIIGVAGAGQEIS-TRPFQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAG 330 (366)
T ss_pred CCEEEEccCCHH---HHHHHHHHHhcCCeEEEEecCCCCceee-cChHHeeccceEEEEeecCCccccchhHHHHHHHcC
Confidence 999999888755 444222222 24555432 2 222221 1110011111 11112456777778999999999
Q ss_pred c
Q 023490 252 K 252 (281)
Q Consensus 252 ~ 252 (281)
|
T Consensus 331 k 331 (366)
T COG1062 331 K 331 (366)
T ss_pred C
Confidence 6
No 395
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.40 E-value=1.1 Score=39.02 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=32.6
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
+++| +++.|.|. |.+|..+++.+.+. |++|++..|...
T Consensus 2 ~~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred CcCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 3678 99999995 78999999999998 999988887643
No 396
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=93.39 E-value=0.18 Score=48.76 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=53.5
Q ss_pred cEEEEEc-cCchHHHHHHHHHhh-hhhccCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEcc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~-~~~~~~G~~Viig~r~~~--~s~~~A~~~G~~~~~~t~~~~~E~-l~~ADVViLav 186 (281)
.+|+||| .|..|+.+.+.|... + ...++.......+ +...... .... ..+.++. .+++|++|+++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~h----P~~~l~~laS~~saG~~~~~~~-~~~~-----v~~~~~~~~~~~Dvvf~a~ 74 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQF----PVGELYALASEESAGETLRFGG-KSVT-----VQDAAEFDWSQAQLAFFVA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCC----CceEEEEEEccCcCCceEEECC-cceE-----EEeCchhhccCCCEEEECC
Confidence 7999999 599999999999874 0 0124433322211 1111000 0122 2233333 37899999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|.....++..+..+ .|+.||+.++
T Consensus 75 p~~~s~~~~~~~~~---~g~~VIDlS~ 98 (336)
T PRK08040 75 GREASAAYAEEATN---AGCLVIDSSG 98 (336)
T ss_pred CHHHHHHHHHHHHH---CCCEEEECCh
Confidence 98766666665533 5888887665
No 397
>PRK08223 hypothetical protein; Validated
Probab=93.39 E-value=0.52 Score=44.85 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=30.6
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEec
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r 148 (281)
+..|+. .+|.|||+|-+|..+++.|... |. ++.+.|.
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a------GVG~i~lvD~ 59 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL------GIGKFTIADF 59 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh------CCCeEEEEeC
Confidence 567889 9999999999999999999988 65 4555543
No 398
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.19 E-value=0.66 Score=45.36 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=55.3
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH----HCCceecCCCcCCHHhh-cCcCCEEEE
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYET-ISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~----~~G~~~~~~t~~~~~E~-l~~ADVViL 184 (281)
|+||+||| .|--|..+.+.|... ..+++.++..+..+...... -.|.....-...+.+++ ..+||+|||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 57999999 789999998888765 13455444322111111111 11111000001233343 556999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC-cch
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG-FLL 216 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG-~~l 216 (281)
|+|.....++..++.. +|..|||.++ |.+
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSadfR~ 106 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSADFRL 106 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCccccc
Confidence 9999887777776653 3445776544 544
No 399
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.18 E-value=0.29 Score=47.67 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=60.1
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViLa 185 (281)
+| +.+||+|+|-+|.==.+..++. |++|++.++...+..+.-+..|...=-....+ .+++.+.-|.++-.
T Consensus 181 pG-~~vgI~GlGGLGh~aVq~AKAM------G~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~ 253 (360)
T KOG0023|consen 181 PG-KWVGIVGLGGLGHMAVQYAKAM------GMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDT 253 (360)
T ss_pred CC-cEEEEecCcccchHHHHHHHHh------CcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCccee
Confidence 78 9999999998888777888888 99998887765443333344663210001112 34566667777777
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
++.- ..+-++..+.+||++-.|++
T Consensus 254 v~~~-a~~~~~~~~~~lk~~Gt~V~ 277 (360)
T KOG0023|consen 254 VSNL-AEHALEPLLGLLKVNGTLVL 277 (360)
T ss_pred eeec-cccchHHHHHHhhcCCEEEE
Confidence 7643 23356666777887665543
No 400
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=93.17 E-value=0.41 Score=45.89 Aligned_cols=66 Identities=9% Similarity=0.111 Sum_probs=48.3
Q ss_pred ccCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 107 ~l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
.++| .+|++||- +++..+++..+..+ |+ ++.+...+.-...+ .....+.. ..+++|+++++|+|
T Consensus 154 ~l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~~p~~-~~~~~~~~----~~d~~ea~~~aDvv 221 (310)
T PRK13814 154 HWNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSLLPDK-VGNDSIKK----FTELKPSLLNSDVI 221 (310)
T ss_pred CcCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCcccCcCc-cccceEEE----EcCHHHHhCCCCEE
Confidence 4789 99999997 69999999999988 98 88777655321111 00112332 46899999999999
Q ss_pred EE
Q 023490 183 LL 184 (281)
Q Consensus 183 iL 184 (281)
..
T Consensus 222 y~ 223 (310)
T PRK13814 222 VT 223 (310)
T ss_pred EE
Confidence 87
No 401
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=93.15 E-value=0.41 Score=46.94 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=29.5
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEe
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~ 147 (281)
...|.. .+|.|||+|-+|..+|++|... |. ++.+.|
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~------Gvg~i~lvD 73 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA------GVGTLGIVE 73 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEEC
Confidence 356788 9999999999999999999987 65 455554
No 402
>PLN02342 ornithine carbamoyltransferase
Probab=93.13 E-value=0.37 Score=47.00 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=51.4
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHHHHHHCC---ceecCCCcCCHHhhcC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAG---FTEENGTLGDIYETIS 177 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~~A~~~G---~~~~~~t~~~~~E~l~ 177 (281)
..++| .||++||- -++..+++..+..+ |++|.+...+.-. ..+.+++.| +.. ..+++|+++
T Consensus 190 G~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~ 258 (348)
T PLN02342 190 GRLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVK 258 (348)
T ss_pred CCcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhC
Confidence 35889 99999996 47888888888888 9998887665421 223344444 332 468999999
Q ss_pred cCCEEEEcc
Q 023490 178 GSDLVLLLI 186 (281)
Q Consensus 178 ~ADVViLav 186 (281)
++|+|..-+
T Consensus 259 ~aDVvy~~~ 267 (348)
T PLN02342 259 GADVVYTDV 267 (348)
T ss_pred CCCEEEECC
Confidence 999999874
No 403
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.13 E-value=0.64 Score=46.42 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=55.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||-|.+|..=++.|.++ |.+|.+....-........+.| +......+ .++-++++++|+.
T Consensus 8 ~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~~--~~~dl~~~~lv~~ 78 (457)
T PRK10637 8 CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGPF--DESLLDTCWLAIA 78 (457)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC--ChHHhCCCEEEEE
Confidence 68999 9999999999999988999888 9888776544322232222333 22211112 2355789999999
Q ss_pred ccCChhHHH
Q 023490 185 LISDAAQAD 193 (281)
Q Consensus 185 avP~~~~~~ 193 (281)
+|.+....+
T Consensus 79 at~d~~~n~ 87 (457)
T PRK10637 79 ATDDDAVNQ 87 (457)
T ss_pred CCCCHHHhH
Confidence 999977655
No 404
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.09 E-value=0.76 Score=42.89 Aligned_cols=91 Identities=21% Similarity=0.263 Sum_probs=63.5
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH----HCCceecCCCcCCHHhhcC---cCC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~----~~G~~~~~~t~~~~~E~l~---~AD 180 (281)
|.| ++|.=||+| |+.++.-+... |.+|. +.+-.++..+.|+ +.|+.. +....+.+|++. +-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~Vt-giD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASVT-GIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCeeE-EecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 789 999999987 45666666666 88865 5555566666665 444442 122345666665 689
Q ss_pred EEEE-----ccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 181 LVLL-----LISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViL-----avP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+|+. |+|+.+. ++.....++|||.++.++
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEe
Confidence 9987 7887554 777889999999988665
No 405
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.05 E-value=0.26 Score=46.29 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=63.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc----------cHHHHHHCCceec----------CCCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----------SFAEARAAGFTEE----------NGTLGD 171 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~----------s~~~A~~~G~~~~----------~~t~~~ 171 (281)
.+|+|+|.|.+|++.|..+... |++|..++-..++ .....++.|.--. -.++.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 5899999999999999999888 9999988764321 1111223332100 023468
Q ss_pred HHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEEEe
Q 023490 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi~a 211 (281)
++|++++|=.|-=|+|..-.. .+|..+-..+.|..||.-+
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSS 119 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASS 119 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEecc
Confidence 899999997777788865442 3666666667777777533
No 406
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.05 E-value=0.32 Score=47.71 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=46.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhcCcCCEEEE--cc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLL--LI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~-s~~~A~~--~G~~~~~~t~~~~~E~l~~ADVViL--av 186 (281)
-+|.|||+|..|.++|+.|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+|+. ++
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~sp~i 78 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIISPGL 78 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEECCCC
Confidence 4799999999999999999999 9999888765432 1122223 36553211 112355778999887 44
Q ss_pred CC
Q 023490 187 SD 188 (281)
Q Consensus 187 P~ 188 (281)
|+
T Consensus 79 ~~ 80 (448)
T PRK03803 79 AL 80 (448)
T ss_pred CC
Confidence 54
No 407
>PRK06197 short chain dehydrogenase; Provisional
Probab=93.04 E-value=0.99 Score=41.47 Aligned_cols=48 Identities=17% Similarity=0.002 Sum_probs=38.0
Q ss_pred hcCCCcccccccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 95 RGGRDLFKLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 95 r~G~W~f~~~~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+.+.|... .+.+++| |++-|.| .|-||.++|+.|.+. |++|++..|..
T Consensus 2 ~~~~~~~~-~~~~~~~-k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~~ 50 (306)
T PRK06197 2 KMTKWTAA-DIPDQSG-RVAVVTGANTGLGYETAAALAAK------GAHVVLAVRNL 50 (306)
T ss_pred CCCCCCcc-ccccCCC-CEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 34556443 2467899 9999999 589999999999998 99988877753
No 408
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.01 E-value=0.27 Score=47.90 Aligned_cols=67 Identities=27% Similarity=0.318 Sum_probs=45.7
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH----HHH-HCCceecCCCcCCHHhhcCcCCEEEE--c
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLL--L 185 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~----~A~-~~G~~~~~~t~~~~~E~l~~ADVViL--a 185 (281)
+|.|||+|..|.++|+.|++. |++|.+.+........ ..+ ..|+....+ .+ .+.++++|+|+. +
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g--~~-~~~~~~~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTG--LH-LEDLNNADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEEec--Cc-hHHhccCCEEEECCC
Confidence 478999999999999999999 9999888765432221 112 247654211 23 456788999888 4
Q ss_pred cCC
Q 023490 186 ISD 188 (281)
Q Consensus 186 vP~ 188 (281)
+|+
T Consensus 72 i~~ 74 (433)
T TIGR01087 72 IPP 74 (433)
T ss_pred CCC
Confidence 454
No 409
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.91 E-value=0.57 Score=47.18 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=32.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
.+|+| +++.|.|+||.|...|+.|.+. |.+|+...+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 47999 9999999999999999999998 998876333
No 410
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=92.89 E-value=1.2 Score=43.30 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=64.5
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCc-CCHHh----hc--CcCC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYE----TI--SGSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~-~~~~E----~l--~~AD 180 (281)
-.| .++.|.|.|.+|...++.++.. |.++++..+...+..+.+++.|+..-+... .+..+ +. ...|
T Consensus 184 ~~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~D 256 (393)
T TIGR02819 184 GPG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVD 256 (393)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCc
Confidence 357 8999999999999999999998 987655544444456788888874211100 12222 22 2479
Q ss_pred EEEEccCChhH-----------HHHHHHHHhcCCCCcEEEEe
Q 023490 181 LVLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViLavP~~~~-----------~~vl~ei~~~mKpgaILi~a 211 (281)
+++-++-.... ...+++.+..++++-.|++.
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 99988875421 23667777788887766543
No 411
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=92.83 E-value=0.31 Score=46.89 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.7
Q ss_pred EEEEEccCchHHHHHHHHHhh
Q 023490 113 QIGVIGWGSQGPAQAQNLRDS 133 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~ 133 (281)
+|.|||.|-+|..+|++|...
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 589999999999999999888
No 412
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=92.77 E-value=1.1 Score=43.24 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=60.5
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViLa 185 (281)
.| .+|.|.|.|.+|...++.++.. |.+|++..+..++..+.+++.|....-. ..+ +.+.....|+|+-+
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~-~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV-TTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc-CcCHHHHHHhhCCCcEEEEC
Confidence 68 9999999999999999999999 9987766655443345666777632100 111 22333457999988
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+.... .+.+.+..++++..++..
T Consensus 250 ~G~~~---~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 250 VSAEH---ALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCcHH---HHHHHHHhhcCCCEEEEE
Confidence 76432 344555667776655433
No 413
>PLN02527 aspartate carbamoyltransferase
Probab=92.77 E-value=0.44 Score=45.50 Aligned_cols=73 Identities=16% Similarity=0.093 Sum_probs=51.2
Q ss_pred cccCCCcEEEEEccC---chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCc
Q 023490 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISG 178 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G---~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~A~~~G~~~~~~t~~~~~E~l~~ 178 (281)
..++| .||++||-+ ++..+++..+..++ |++|.+...+.- .-.+.+++.|...+ ...++++++++
T Consensus 147 g~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~ 218 (306)
T PLN02527 147 GRLDG-IKVGLVGDLANGRTVRSLAYLLAKYE-----DVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASK 218 (306)
T ss_pred CCcCC-CEEEEECCCCCChhHHHHHHHHHhcC-----CCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCC
Confidence 35899 999999976 58899999877642 788877766432 22233445454321 14689999999
Q ss_pred CCEEEEcc
Q 023490 179 SDLVLLLI 186 (281)
Q Consensus 179 ADVViLav 186 (281)
+|+|....
T Consensus 219 aDvvyt~~ 226 (306)
T PLN02527 219 CDVLYQTR 226 (306)
T ss_pred CCEEEECC
Confidence 99999943
No 414
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=92.65 E-value=0.76 Score=44.73 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=53.4
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCceecCCCcC--CHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLG--DIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~~~~~~t~~--~~~E~l~~ADVViLavP 187 (281)
++|||+| .|..|+.+.+.|... .|.++ +.+.....+.-.+...-.+... .... ......+++|+++.+.+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~----~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~~~~~~~~~~~~Divf~~ag 75 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER----HFPFEELVLLASARSAGKKYIEFGGKSI--GVPEDAADEFVFSDVDIVFFAAG 75 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc----CCCcceEEEEecccccCCccccccCccc--cCccccccccccccCCEEEEeCc
Confidence 7899998 799999999999885 12233 2233222111011011111110 0011 12245678999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.....++..+.. +.|+++|+.++
T Consensus 76 ~~~s~~~~p~~~---~~G~~VIdnsS 98 (334)
T COG0136 76 GSVSKEVEPKAA---EAGCVVIDNSS 98 (334)
T ss_pred hHHHHHHHHHHH---HcCCEEEeCCc
Confidence 877666666543 34778877665
No 415
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=92.63 E-value=1.1 Score=42.32 Aligned_cols=117 Identities=17% Similarity=0.278 Sum_probs=71.0
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecC-CcccH----HHH---HHCCceecCCCcCCHHhhcCcCCE
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSF----AEA---RAAGFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~-~~~s~----~~A---~~~G~~~~~~t~~~~~E~l~~ADV 181 (281)
+++|+|.|. |.||+.+.+.+... .++++.-+..+ ++... .+. ...|+.. ..++.....++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 489999997 99999999999876 14665544333 22110 011 1233332 2356778899999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
+|=-+-|....++++..+.+= -.+|+=..||+-++++... .+.+.+++ -++||+.
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~l~-~~a~~v~v-v~a~NfS 127 (266)
T COG0289 73 LIDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEKLR-EAAEKVPV-VIAPNFS 127 (266)
T ss_pred EEECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHHHH-HHHhhCCE-EEeccch
Confidence 999888877767776444332 2256668899865544311 12234443 4567764
No 416
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.62 E-value=1 Score=44.58 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.1
Q ss_pred cEEEEEcc-CchHHHHHHHHHhh
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~ 133 (281)
-||+|||. |++|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 68999999 99999999998776
No 417
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.59 E-value=0.51 Score=46.02 Aligned_cols=88 Identities=13% Similarity=0.165 Sum_probs=53.3
Q ss_pred cEEEEEc-cCchHHHHHHHHHh-hhhhccCCcE---EEEEecC--CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRD-SLAEAKSDIV---VKVGLRK--GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra-~~~~~~~G~~---Viig~r~--~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+||||| .|..|+.+.+.|.. . .++ +.+.... ..+......+ ....+ ..+.+ .+++.|++|+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 6899999 59999999999984 4 444 3333222 1111111101 11211 11333 3588999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++|.....++..+.. +.|+.||+.++
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss 100 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTS 100 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECch
Confidence 999876666666543 35888887665
No 418
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.58 E-value=1.9 Score=37.46 Aligned_cols=93 Identities=19% Similarity=0.244 Sum_probs=59.4
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhh-----cCcCCE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~-----l~~ADV 181 (281)
-+| .+|.|.|.|.+|.++++.++.. |.+|+...+.. ...+.+++.|.... +....+..+. -+..|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRSD-EKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCCH-HHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 467 8999999999999999999998 88887666553 33445555553210 0001122222 256899
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
|+-++... ..+...+..|+++..++..
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEE
Confidence 99888763 2345556677777666544
No 419
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.57 E-value=1.4 Score=37.82 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=32.7
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
.++| |++.|+| .|.+|.++++.|.+. |++|++..|...
T Consensus 4 ~~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~~ 42 (239)
T PRK12828 4 SLQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGAA 42 (239)
T ss_pred CCCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCChH
Confidence 4778 9999999 589999999999988 999888877543
No 420
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=92.52 E-value=0.2 Score=46.82 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=31.5
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEe
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGL 147 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~ 147 (281)
.+++| +++.|.|+|++|+..|+.|.+. |.+|+ +.+
T Consensus 34 ~~l~g-~~vaIqGfGnVG~~~a~~L~e~------GakvvaVsD 69 (254)
T cd05313 34 ETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVVTLSD 69 (254)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 67899 9999999999999999999998 99887 444
No 421
>PRK08374 homoserine dehydrogenase; Provisional
Probab=92.51 E-value=1 Score=43.39 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=50.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhh----hccCCcEEE-EEecCCcc------cHHH----HHHCCceec----CC-CcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVK-VGLRKGSR------SFAE----ARAAGFTEE----NG-TLGD 171 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~----~~~~G~~Vi-ig~r~~~~------s~~~----A~~~G~~~~----~~-t~~~ 171 (281)
.+|+|+|+|++|+.+++.|.+.-. ..|..++|+ +.+++... .... ..+.+.... .+ ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 589999999999999999877311 122234543 34432110 0111 111111000 00 0126
Q ss_pred HHhhc--CcCCEEEEccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 172 ~~E~l--~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi 209 (281)
.+|++ .++|+|+=+++.....+++.+.+ +.|..|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~al---~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEAL---KEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHHH---hhCCcEE
Confidence 67777 58999999987665555555443 3455444
No 422
>PRK08265 short chain dehydrogenase; Provisional
Probab=92.48 E-value=1.4 Score=39.49 Aligned_cols=38 Identities=21% Similarity=0.074 Sum_probs=33.1
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.+++| |++-|.|. |-||.++++.|.+. |++|++.+|..
T Consensus 2 ~~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 40 (261)
T PRK08265 2 IGLAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDA 40 (261)
T ss_pred CCCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 45788 99999995 89999999999998 99998887764
No 423
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.45 E-value=0.33 Score=47.73 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=51.2
Q ss_pred CcEEEEEc-cCchHHHHHH-HHHhhhhhccCCcE---EEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEE
Q 023490 111 INQIGVIG-WGSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~-~Lra~~~~~~~G~~---Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|++|+||| .|..|+.+.+ .|... .+. +.......+ -..-... |....-....+ .+.++++|++|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~~ss~~s--g~~~~~f~g~~~~v~~~~~-~~~~~~~Divf~ 71 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVFFSTSQA--GGAAPSFGGKEGTLQDAFD-IDALKKLDIIIT 71 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEEecchhh--CCcccccCCCcceEEecCC-hhHhcCCCEEEE
Confidence 57899999 5999999998 55544 443 444322110 0000000 10000000112 244688999999
Q ss_pred ccCChhHHHHHHHHHhcCCCC--cEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPN--SILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpg--aILi~aaG 213 (281)
++|.....++..+... .| ++|++.++
T Consensus 72 a~~~~~s~~~~~~~~~---aG~~~~VID~Ss 99 (369)
T PRK06598 72 CQGGDYTNEVYPKLRA---AGWQGYWIDAAS 99 (369)
T ss_pred CCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence 9998766666665533 46 66777665
No 424
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=92.40 E-value=1.2 Score=42.25 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=59.9
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhcCcCCEEEEcc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t-~~~~~E~l~~ADVViLav 186 (281)
.| .++.|+|.|.+|...++.++.. |.+|++..+.+.+.....++.|.... +.. ...+.+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 68 8999999999999999999998 98877666554333333345775320 000 001223334579999988
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
.... .+++.+..++++..++..
T Consensus 253 g~~~---~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 253 PVFH---PLEPYLSLLKLDGKLILM 274 (357)
T ss_pred CchH---HHHHHHHHhccCCEEEEE
Confidence 7432 445556677887766544
No 425
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=92.37 E-value=0.47 Score=46.39 Aligned_cols=71 Identities=13% Similarity=0.071 Sum_probs=49.3
Q ss_pred ccCCCcEEEEEccC--------chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcC
Q 023490 107 AFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLG 170 (281)
Q Consensus 107 ~l~G~ktIGIIG~G--------~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~----A~~~G~~~~~~t~~ 170 (281)
.|+| +||+|+|.| ++..+++..+..+ |++|.+...++- ...+. +++.|...+ ...
T Consensus 167 ~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~ 237 (357)
T TIGR03316 167 NLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IVN 237 (357)
T ss_pred ccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 4788 999999853 4557888888887 999888876532 11222 334553321 146
Q ss_pred CHHhhcCcCCEEEEcc
Q 023490 171 DIYETISGSDLVLLLI 186 (281)
Q Consensus 171 ~~~E~l~~ADVViLav 186 (281)
+++|+++++|+|..-.
T Consensus 238 d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 238 SMDEAFKDADIVYPKS 253 (357)
T ss_pred CHHHHhCCCCEEEECC
Confidence 8999999999999874
No 426
>PRK07411 hypothetical protein; Validated
Probab=92.35 E-value=0.46 Score=46.62 Aligned_cols=88 Identities=10% Similarity=0.039 Sum_probs=54.2
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC-------------------cccHHHHH---HC-
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---AA- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~-------------------~~s~~~A~---~~- 160 (281)
...|+. .+|.|||+|-+|..++++|... |. ++++.|... .+....++ +.
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 457888 9999999999999999999988 65 445554320 01000111 11
Q ss_pred -Cceec--CCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHH
Q 023490 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 161 -G~~~~--~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~ 199 (281)
.+..+ .... .+..+.++++|+|+.++-......++++..
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11110 0111 124568899999999888766656777544
No 427
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=92.30 E-value=0.3 Score=46.35 Aligned_cols=62 Identities=23% Similarity=0.213 Sum_probs=41.7
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH-HHHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~-~~A~~~G~~~~~~t~~~---~~E~l~~ADVViL 184 (281)
+|||||.|..|..+++.++.. |++|++.+....... ..+. .-+.. ...+ +.++++.+|+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~l------G~~v~~~d~~~~~p~~~~ad-~~~~~---~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPL------GIKVHVLDPDANSPAVQVAD-HVVLA---PFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCEEEEECCCCCCChhHhCc-eeEeC---CCCCHHHHHHHHhhCCEEEe
Confidence 599999999999999999998 999888766532211 1121 11111 1234 5677888998754
No 428
>PRK09242 tropinone reductase; Provisional
Probab=92.25 E-value=1.4 Score=39.09 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=32.1
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.++| |++-|+| .|.||.++++.|.+. |++|++..|..
T Consensus 6 ~~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~ 43 (257)
T PRK09242 6 RLDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA 43 (257)
T ss_pred ccCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 4788 9999999 579999999999998 99988887754
No 429
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=92.25 E-value=0.48 Score=47.24 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=34.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
.+|+| ++|+|=|+||.|+-.|+.|.+. |.+|+..++...
T Consensus 203 ~~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 203 DDLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CCcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 35999 9999999999999999999988 999887766543
No 430
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=92.23 E-value=0.28 Score=47.21 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=42.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC--Cceec--C-CCcC-CHHhhcCcCCEEEEc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEE--N-GTLG-DIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~--G~~~~--~-~t~~-~~~E~l~~ADVViLa 185 (281)
+||+|||.|++|+++|..|... +.+-++.+.+.......-.+.+. ..... + .... ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999554 22336777776522211111111 10000 0 0011 125779999999997
Q ss_pred c
Q 023490 186 I 186 (281)
Q Consensus 186 v 186 (281)
.
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 6
No 431
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=92.23 E-value=0.74 Score=46.33 Aligned_cols=75 Identities=15% Similarity=0.019 Sum_probs=42.1
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccC--C--cEEEEEecCCcccHHHHHH--CCc-eecCCC--cCCHHhhcCcCCE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKS--D--IVVKVGLRKGSRSFAEARA--AGF-TEENGT--LGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~--G--~~Viig~r~~~~s~~~A~~--~G~-~~~~~t--~~~~~E~l~~ADV 181 (281)
-+|+|||. |++|.++|-.|.... =+|. + .++++.++..+.....+.+ ... ...... ..+..+.+++||+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~-v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGE-VFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcc-cccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 68999999 999999999876430 0000 1 1555555554332222221 111 000000 1345688999999
Q ss_pred EEEccC
Q 023490 182 VLLLIS 187 (281)
Q Consensus 182 ViLavP 187 (281)
|++..-
T Consensus 180 VVitAG 185 (444)
T PLN00112 180 ALLIGA 185 (444)
T ss_pred EEECCC
Confidence 999543
No 432
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.18 E-value=0.9 Score=40.26 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=32.8
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| +++-|+|. |-||.++++.+.+. |++|++.+|..
T Consensus 3 ~~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~~ 41 (255)
T PRK06057 3 QRLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDIDP 41 (255)
T ss_pred ccCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 34788 99999996 89999999999998 99988877653
No 433
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=92.18 E-value=0.3 Score=50.37 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=48.5
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHHHHCCceecCCCcCC---HHhhcCcCC
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGD---IYETISGSD 180 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A~~~G~~~~~~t~~~---~~E~l~~AD 180 (281)
...... |+|||||-|..|.-+++.++.. |++|++.+...... ...+.+ -+. ..+.| +.++++++|
T Consensus 17 ~~~~~~-k~IgIIGgGqlg~mla~aA~~l------G~~Vi~ld~~~~apa~~~AD~-~~v---~~~~D~~~l~~~a~~~d 85 (577)
T PLN02948 17 VHGVSE-TVVGVLGGGQLGRMLCQAASQM------GIKVKVLDPLEDCPASSVAAR-HVV---GSFDDRAAVREFAKRCD 85 (577)
T ss_pred ccCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCCchhhhCce-eee---CCCCCHHHHHHHHHHCC
Confidence 445777 9999999999999999999998 99988876653211 111111 111 11234 445678899
Q ss_pred EEEEccCC
Q 023490 181 LVLLLISD 188 (281)
Q Consensus 181 VViLavP~ 188 (281)
+|......
T Consensus 86 vIt~e~e~ 93 (577)
T PLN02948 86 VLTVEIEH 93 (577)
T ss_pred EEEEecCC
Confidence 98775443
No 434
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.16 E-value=0.78 Score=43.46 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=47.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH---------CCceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~---------~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
++|.|||.|.+--+..-..+.. +.+..|.-.+.. +...+.+++ .+.....+...+...-+.+.|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~----~~~~~v~~iD~d-~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH----GPGARVHNIDID-PEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H----TT--EEEEEESS-HHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHh----CCCCeEEEEeCC-HHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEE
Confidence 5999999999988877666554 224445444444 333333322 11111100111222336789999
Q ss_pred EEccCCh----hHHHHHHHHHhcCCCCcEEEE--eCCcc
Q 023490 183 LLLISDA----AQADNYEKIFSCMKPNSILGL--SHGFL 215 (281)
Q Consensus 183 iLavP~~----~~~~vl~ei~~~mKpgaILi~--aaG~~ 215 (281)
+++.=.. +-.++++.+..+|+||+.|++ ++|..
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 9976654 344699999999999998874 66654
No 435
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=92.16 E-value=0.37 Score=46.42 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=52.3
Q ss_pred EEEEEc-cCchHHHHHHHHHhhhhhccCCcE---EEEEecCCcccHHHHHHCCceecCCCcCCH-HhhcCcCCEEEEccC
Q 023490 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (281)
Q Consensus 113 tIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~---Viig~r~~~~s~~~A~~~G~~~~~~t~~~~-~E~l~~ADVViLavP 187 (281)
+|+||| .|..|..+.+.|.+. ++. +.+..+......... -.|... ...+. .+.++++|+|++++|
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~-~~~~~~---~~~~~~~~~~~~~D~v~~a~g 70 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT-FKGKEL---EVNEAKIESFEGIDIALFSAG 70 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee-eCCeeE---EEEeCChHHhcCCCEEEECCC
Confidence 589999 899999999999876 553 322323211111110 112111 01111 234589999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.....++..++. +.|..||+.++
T Consensus 71 ~~~s~~~a~~~~---~~G~~VID~ss 93 (339)
T TIGR01296 71 GSVSKEFAPKAA---KCGAIVIDNTS 93 (339)
T ss_pred HHHHHHHHHHHH---HCCCEEEECCH
Confidence 876666665543 35777776655
No 436
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.10 E-value=1.1 Score=39.72 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=31.3
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.+.| |++.|+| .|-||.++|+.|.+. |++|++..+..
T Consensus 4 ~l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~ 41 (255)
T PRK06463 4 RFKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSA 41 (255)
T ss_pred CcCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 4678 9999999 589999999999998 99987765543
No 437
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.08 E-value=2.2 Score=39.14 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=30.0
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEec
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r 148 (281)
+..|.. ++|.|||+|-+|..++++|... |. ++++.|.
T Consensus 6 ~~~L~~-~~VlVvG~GGvGs~va~~Lar~------GVg~i~LvD~ 43 (231)
T cd00755 6 LEKLRN-AHVAVVGLGGVGSWAAEALARS------GVGKLTLIDF 43 (231)
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHc------CCCEEEEECC
Confidence 355788 9999999999999999999988 76 4555543
No 438
>PRK06114 short chain dehydrogenase; Provisional
Probab=92.07 E-value=1.8 Score=38.36 Aligned_cols=37 Identities=19% Similarity=0.089 Sum_probs=32.2
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.++| |++-|.| .|-||.++|+.|.+. |++|++.++..
T Consensus 5 ~~~~-k~~lVtG~s~gIG~~ia~~l~~~------G~~v~~~~r~~ 42 (254)
T PRK06114 5 DLDG-QVAFVTGAGSGIGQRIAIGLAQA------GADVALFDLRT 42 (254)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 4788 9999999 669999999999998 99998887764
No 439
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.07 E-value=1.1 Score=41.92 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=57.8
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC----CHHhhcC------c
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG----DIYETIS------G 178 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~----~~~E~l~------~ 178 (281)
+| .+|.|+|.|.+|...++.++.. |.+|++.++.. +..+.+++.|....-.... +..+.+. .
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~~~-~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g 237 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDIDP-EKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARG 237 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCCH-HHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCC
Confidence 57 9999999999999999999998 98876665543 3456777777632000001 1222222 2
Q ss_pred CC----EEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 179 SD----LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 179 AD----VViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
.| +|+-++.... .++..++.++++..+++.
T Consensus 238 ~d~~~d~v~d~~g~~~---~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 238 LRSTGWKIFECSGSKP---GQESALSLLSHGGTLVVV 271 (349)
T ss_pred CCCCcCEEEECCCChH---HHHHHHHHHhcCCeEEEE
Confidence 33 7777776533 344445667777766544
No 440
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.05 E-value=0.32 Score=42.49 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=32.9
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
+++| +++.|+| .|.+|.++++.|.+. |++|++..|...
T Consensus 2 ~~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNEE 40 (251)
T ss_pred CcCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 4678 9999999 589999999999998 999888887753
No 441
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=92.03 E-value=1.1 Score=43.24 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=48.6
Q ss_pred cccCCCcEEEEEc---cCchHHHHHHHHHhhhhhccCCcEEEEEecCC----cccHHHHHHCC-ceecCCCcCCHHhhcC
Q 023490 106 DAFNGINQIGVIG---WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG-FTEENGTLGDIYETIS 177 (281)
Q Consensus 106 ~~l~G~ktIGIIG---~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~----~~s~~~A~~~G-~~~~~~t~~~~~E~l~ 177 (281)
..+.| .+|+|+| +|....+.++.|..+ |.+|.+..+.. ..-.+...+.| ... .....+|+++
T Consensus 154 G~~~g-l~iaivGDlkhsRva~S~~~~L~~~------ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~---~~~~~e~~i~ 223 (316)
T COG0540 154 GRLDG-LKIAIVGDLKHSRVAHSNIQALKRF------GAEVYLVSPETLLPPEYILEELEEKGGVVV---EHDSDEEVIE 223 (316)
T ss_pred CCcCC-cEEEEEccccchHHHHHHHHHHHHc------CCEEEEECchHhCCchhHHHHHhhcCceEE---Eecchhhhhc
Confidence 45899 9999999 899999999999999 98876654431 11113333433 221 1334556999
Q ss_pred cCCEEEEc
Q 023490 178 GSDLVLLL 185 (281)
Q Consensus 178 ~ADVViLa 185 (281)
++||+++.
T Consensus 224 ~~DVl~~l 231 (316)
T COG0540 224 EADVLYML 231 (316)
T ss_pred cCCEEEee
Confidence 99999873
No 442
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=91.95 E-value=0.66 Score=44.98 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=50.3
Q ss_pred ccCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCcC
Q 023490 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGS 179 (281)
Q Consensus 107 ~l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~A~~~G~~~~~~t~~~~~E~l~~A 179 (281)
.++| .||++||- +++..+++..+...+ |++|.+..+++- ...+.+++.|...+ ...+++|+++++
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMYK-----NVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHhc-----CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 5899 99999997 588999888766442 888887766532 22233445453321 146899999999
Q ss_pred CEEEEc
Q 023490 180 DLVLLL 185 (281)
Q Consensus 180 DVViLa 185 (281)
|+|..-
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
No 443
>PRK06392 homoserine dehydrogenase; Provisional
Probab=91.93 E-value=0.5 Score=45.54 Aligned_cols=98 Identities=15% Similarity=0.158 Sum_probs=49.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhh--hccCCcEEE-EEecCCc----c--cHHHH---HHCC-ceecCCCcCCHHhhc-C
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVK-VGLRKGS----R--SFAEA---RAAG-FTEENGTLGDIYETI-S 177 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~--~~~~G~~Vi-ig~r~~~----~--s~~~A---~~~G-~~~~~~t~~~~~E~l-~ 177 (281)
++|+|||+|++|+.+++.|.+.-. ..+.+++|+ +.+++.. . ..+.. .+.| +........++++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 489999999999999999877300 112355543 4444321 0 01110 1112 110000001455553 4
Q ss_pred cCCEEEEccCChhH-HHHHHHHHhcCCCCcEEE
Q 023490 178 GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 178 ~ADVViLavP~~~~-~~vl~ei~~~mKpgaILi 209 (281)
+.|+|+=++|.... ...+.-+.+.|+.|..|+
T Consensus 81 ~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVV 113 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKNLYINAFEHGIDVV 113 (326)
T ss_pred CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEE
Confidence 68999999974321 112333334455666554
No 444
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=91.88 E-value=0.4 Score=45.03 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=66.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
+.+||||.|..|++...+...- ++.. +. ..+++.+.++. ++.. ..+.+...+-.++++.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~c--s~-i~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVAC--SA-ISSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------heee--hh-hhhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 6899999999999965554443 4432 11 11233333333 2222 2244445555677777777
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcch-hhhhhcccCCCCCceEEEeccCCCChhhHHhhh
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL-GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l-~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~ 249 (281)
+.....+. .-..-.||++|+-++|++- +.+...+ +.+---..+||++.=+.+-.--.
T Consensus 77 d~~~s~va--a~~~~rpg~iv~HcSga~~~~il~~~g---r~g~~~asiHP~f~Fsgl~edl~ 134 (289)
T COG5495 77 DALYSGVA--ATSLNRPGTIVAHCSGANGSGILAPLG---RQGCIPASIHPAFSFSGLDEDLS 134 (289)
T ss_pred HHHHHHHH--HhcccCCCeEEEEccCCCchhhhhhhh---hcCCcceeecccccccCCHHHHH
Confidence 75322222 2234578999999999873 3333211 11222357899988776654444
No 445
>PRK06182 short chain dehydrogenase; Validated
Probab=91.88 E-value=1.4 Score=39.47 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=45.0
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcC-------
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETIS------- 177 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~------- 177 (281)
++ +++.|.| .|-+|.++++.|.+. |++|++..|..++ .+...+.++..-.....+ .+++++
T Consensus 2 ~~-k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~~-l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QK-KVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVDK-MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 46 8999999 589999999999988 9998877776432 222222332211011223 233343
Q ss_pred cCCEEEEccC
Q 023490 178 GSDLVLLLIS 187 (281)
Q Consensus 178 ~ADVViLavP 187 (281)
..|+|+.+..
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 6799998764
No 446
>PRK07060 short chain dehydrogenase; Provisional
Probab=91.78 E-value=0.78 Score=39.96 Aligned_cols=74 Identities=20% Similarity=0.150 Sum_probs=46.8
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---HhhcC---cC
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETIS---GS 179 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~---~E~l~---~A 179 (281)
.++| +++.|.|. |.+|..+++.+.+. |++|++..|..++..+.....+.........+. +++++ ..
T Consensus 6 ~~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (245)
T PRK07060 6 DFSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAF 78 (245)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCC
Confidence 4788 99999997 79999999999998 999888877643322233332322100112232 23333 47
Q ss_pred CEEEEccC
Q 023490 180 DLVLLLIS 187 (281)
Q Consensus 180 DVViLavP 187 (281)
|+||-+..
T Consensus 79 d~vi~~ag 86 (245)
T PRK07060 79 DGLVNCAG 86 (245)
T ss_pred CEEEECCC
Confidence 98887663
No 447
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=91.77 E-value=0.69 Score=46.39 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=50.8
Q ss_pred cCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCcCC
Q 023490 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~A~~~G~~~~~~t~~~~~E~l~~AD 180 (281)
++| +||++||- +++..+++..+..++ |++|.+...+.- .-.+.+.+.|...+ ...+++|+++++|
T Consensus 239 l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~AD 310 (429)
T PRK11891 239 VDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGAD 310 (429)
T ss_pred cCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCCC
Confidence 889 99999997 589999999876642 899888766542 11233444453321 1468999999999
Q ss_pred EEEEcc
Q 023490 181 LVLLLI 186 (281)
Q Consensus 181 VViLav 186 (281)
+|....
T Consensus 311 VVYt~~ 316 (429)
T PRK11891 311 VVYATR 316 (429)
T ss_pred EEEEcC
Confidence 999844
No 448
>PRK13984 putative oxidoreductase; Provisional
Probab=91.77 E-value=0.65 Score=47.49 Aligned_cols=72 Identities=21% Similarity=0.159 Sum_probs=50.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (281)
.+ ++|.|||.|..|.+.|..|++. |++|.+.++... +..+..++.|+...-++
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 354 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT 354 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence 57 9999999999999999999998 999988865431 11234556675432111
Q ss_pred c----CCHHhhcCcCCEEEEccC
Q 023490 169 L----GDIYETISGSDLVLLLIS 187 (281)
Q Consensus 169 ~----~~~~E~l~~ADVViLavP 187 (281)
. .+.+++-.+.|.|+|++-
T Consensus 355 ~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 355 RVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred EeCCcCCHHHHHhcCCEEEEEcC
Confidence 1 134455567999999886
No 449
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=91.77 E-value=0.34 Score=46.42 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=57.0
Q ss_pred HHCCceecCCCcCCHHhhcCcCCEEEEccCChh-HHHHHHHHHhcCCCCcEEEEeCCcch----hhhhhcccCCCCCceE
Q 023490 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLL----GHLQSIGLDFPKNIGV 232 (281)
Q Consensus 158 ~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~-~~~vl~ei~~~mKpgaILi~aaG~~l----~~l~~~~~~~~~~i~V 232 (281)
++.|+.. ..|-.|+++++|++|+-+|-.. +.+++++++++++.|++|.-.+-+.. ..++. +. ++|+.|
T Consensus 125 EdaGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~--l~-R~DvgI 197 (342)
T PRK00961 125 EDLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD--LG-RDDLNV 197 (342)
T ss_pred HHcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH--hC-cccCCe
Confidence 4577775 4577799999999999999866 56799999999999999987666552 22332 22 678999
Q ss_pred EEeccC
Q 023490 233 IAVCPK 238 (281)
Q Consensus 233 IrvmPn 238 (281)
...||-
T Consensus 198 sS~HPa 203 (342)
T PRK00961 198 TSYHPG 203 (342)
T ss_pred eccCCC
Confidence 988884
No 450
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=91.76 E-value=0.64 Score=44.11 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=31.5
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~ 149 (281)
+..|.. .+|.|||+|-+|..+|++|... |. ++.+.|..
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D~d 52 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHDTK 52 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEcCC
Confidence 456778 9999999999999999999988 77 56666643
No 451
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.73 E-value=1.3 Score=41.23 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHh---hcC--cCC-E
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE---TIS--GSD-L 181 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E---~l~--~AD-V 181 (281)
.| .++.|.|.|.+|...++.++.. |.++++......+..+.+++.|.... +....+.++ ... ..| +
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 57 8999999999999999999998 98743433333334556677775310 000011122 222 356 7
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
|+-++... ..+.+.+..++++..+++.
T Consensus 233 v~d~~G~~---~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 233 ILETAGVP---QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 77777653 2456666777887766544
No 452
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=91.71 E-value=0.53 Score=46.34 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=44.7
Q ss_pred EEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 113 tIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
+|-|||.|..|-+ +|+.|++. |++|.+.+.......+..++.|+.... ....+.++++|+|++
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~~---g~~~~~~~~~d~vV~ 64 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIYI---GHSAENLDDADVVVV 64 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEeC---CCCHHHCCCCCEEEE
Confidence 3789999999998 99999999 999988876543322334456766421 122355778999987
No 453
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.47 E-value=1.8 Score=37.72 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=32.0
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| +++-|+| .|.||.++++.|.+. |++|++..+..
T Consensus 3 ~~~~~-~~vlItGa~g~iG~~la~~l~~~------G~~v~~~~r~~ 41 (250)
T PRK12939 3 SNLAG-KRALVTGAARGLGAAFAEALAEA------GATVAFNDGLA 41 (250)
T ss_pred CCCCC-CEEEEeCCCChHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 34778 9999999 589999999999998 99987776653
No 454
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=91.46 E-value=0.41 Score=45.95 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=57.0
Q ss_pred HHCCceecCCCcCCHHhhcCcCCEEEEccCChh-HHHHHHHHHhcCCCCcEEEEeCCcch----hhhhhcccCCCCCceE
Q 023490 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLL----GHLQSIGLDFPKNIGV 232 (281)
Q Consensus 158 ~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~-~~~vl~ei~~~mKpgaILi~aaG~~l----~~l~~~~~~~~~~i~V 232 (281)
++.|+.. ..|-.|+++++|++|+-+|-.. +.++++++.++++.|++|.-.+-+.. ..++. +. ++|+.|
T Consensus 123 EdaGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~--l~-R~DvgV 195 (340)
T TIGR01723 123 EDLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFED--LG-REDLNV 195 (340)
T ss_pred HHcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHh--hC-cccCCe
Confidence 4577775 4577799999999999999866 57799999999999999987666553 22332 22 578999
Q ss_pred EEeccC
Q 023490 233 IAVCPK 238 (281)
Q Consensus 233 IrvmPn 238 (281)
...||-
T Consensus 196 sS~HPa 201 (340)
T TIGR01723 196 TSYHPG 201 (340)
T ss_pred eccCCC
Confidence 988884
No 455
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.46 E-value=1.8 Score=40.01 Aligned_cols=93 Identities=20% Similarity=0.149 Sum_probs=59.8
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCceec-CCCcCCH---HhhcC--cCC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDI---YETIS--GSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~---~E~l~--~AD 180 (281)
..| .+|.|+|.|.+|...++.++.. |.+ |++.++. .+..+.+++.|.... +....+. .+... ..|
T Consensus 162 ~~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~~~~-~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGVDPS-PERLELAKALGADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 358 9999999999999999999998 987 7665544 334566777775320 0000111 12222 589
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+|+-++.... .+.+.+..++++..+++.
T Consensus 234 ~vid~~g~~~---~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 234 VAIECSGNTA---ARRLALEAVRPWGRLVLV 261 (339)
T ss_pred EEEECCCCHH---HHHHHHHHhhcCCEEEEE
Confidence 9998887543 334445667777665543
No 456
>PRK07825 short chain dehydrogenase; Provisional
Probab=91.42 E-value=1.8 Score=38.73 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=31.7
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
++.| +++-|.|. |-||.++++.|.+. |++|++..|+.
T Consensus 2 ~~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~ 39 (273)
T PRK07825 2 DLRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDE 39 (273)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCH
Confidence 4678 99999994 79999999999998 99988887753
No 457
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=91.41 E-value=0.85 Score=44.22 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=50.3
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcCCHHhhcC
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLGDIYETIS 177 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~----A~~~G~~~~~~t~~~~~E~l~ 177 (281)
.++| .+|++||- .++..+++..+..+ |++|.+...+.- .-.+. ++..|...+ ...+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 5889 99999996 58888998888887 999888766531 11222 223453211 1468999999
Q ss_pred cCCEEEEcc
Q 023490 178 GSDLVLLLI 186 (281)
Q Consensus 178 ~ADVViLav 186 (281)
++|+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999933
No 458
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.33 E-value=0.81 Score=45.44 Aligned_cols=74 Identities=24% Similarity=0.236 Sum_probs=51.5
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--------------------ccHHHHHHCCceecC
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--------------------~s~~~A~~~G~~~~~ 166 (281)
.-.| ++|.|||.|..|-+.|..|+.. |++|+++++... ...+...+.|+...-
T Consensus 140 ~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 140 KRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 3467 9999999999999999999998 999988876421 012335566755321
Q ss_pred CCcC----CHHhhcCcCCEEEEccC
Q 023490 167 GTLG----DIYETISGSDLVLLLIS 187 (281)
Q Consensus 167 ~t~~----~~~E~l~~ADVViLavP 187 (281)
++.. +.+++....|.|++++-
T Consensus 213 ~~~v~~~~~~~~~~~~~d~vvlAtG 237 (471)
T PRK12810 213 NVEVGKDITAEELLAEYDAVFLGTG 237 (471)
T ss_pred CCEECCcCCHHHHHhhCCEEEEecC
Confidence 2211 34455568999999863
No 459
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.31 E-value=2.2 Score=40.21 Aligned_cols=92 Identities=22% Similarity=0.269 Sum_probs=59.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCceec-CCCcCCHH----hhcC--cCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETIS--GSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~----E~l~--~AD 180 (281)
+| .+|.|+|.|.+|...++.++.. |.+ |+..++. .+..+.+++.|.... +....+.. +... ..|
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~-~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDID-DRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCC-HHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 57 8999999999999999999998 985 6555444 345667778875310 10011222 2222 479
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+|+=++... ..+++.+..++++-.+++.
T Consensus 248 ~vid~~g~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 248 VVIDAVGRP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 999887643 2345556677887766544
No 460
>PRK05717 oxidoreductase; Validated
Probab=91.23 E-value=2 Score=38.08 Aligned_cols=37 Identities=22% Similarity=0.046 Sum_probs=32.1
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.++| |++-|.| .|.||.++|+.|.+. |++|++.++..
T Consensus 7 ~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~~ 44 (255)
T PRK05717 7 GHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLDR 44 (255)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCCH
Confidence 5789 9999999 589999999999988 99988776653
No 461
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.22 E-value=0.87 Score=44.60 Aligned_cols=66 Identities=29% Similarity=0.308 Sum_probs=44.6
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH----HHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EARAAGFTEENGTLGD---IYETISGSDLVLL 184 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~----~A~~~G~~~~~~t~~~---~~E~l~~ADVViL 184 (281)
+|.|||.|..|.+.|+.|.+. |++|.+.++....... ..++.|+...-+...+ ..+.+.+.|+|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEE
Confidence 689999999999999999999 9999888865432111 2335576542111111 1146778999988
No 462
>PRK06500 short chain dehydrogenase; Provisional
Probab=91.22 E-value=2.1 Score=37.32 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=31.2
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
.++| +++.|.| .|.+|.++++.|.+. |++|++..|.
T Consensus 3 ~~~~-k~vlItGasg~iG~~la~~l~~~------g~~v~~~~r~ 39 (249)
T PRK06500 3 RLQG-KTALITGGTSGIGLETARQFLAE------GARVAITGRD 39 (249)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCC
Confidence 4678 9999999 589999999999998 9998777665
No 463
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.16 E-value=0.72 Score=40.83 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=32.9
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| |++-|.|. |-||.++++.|.+. |++|++..|..
T Consensus 5 ~~~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 43 (253)
T PRK05867 5 FDLHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARHL 43 (253)
T ss_pred ccCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCCH
Confidence 45789 99999996 79999999999998 99988877753
No 464
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=91.12 E-value=0.92 Score=43.75 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=18.9
Q ss_pred EEEEEccCchHHHHHHHHHhh
Q 023490 113 QIGVIGWGSQGPAQAQNLRDS 133 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~ 133 (281)
+|||+|+|.||+.+.+.|...
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~ 21 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYES 21 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhc
Confidence 589999999999999998764
No 465
>PRK08589 short chain dehydrogenase; Validated
Probab=91.11 E-value=2.4 Score=38.28 Aligned_cols=37 Identities=16% Similarity=0.043 Sum_probs=32.3
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
..++| |++-|.|. |-||.++|+.|.+. |++|++..|.
T Consensus 2 ~~l~~-k~vlItGas~gIG~aia~~l~~~------G~~vi~~~r~ 39 (272)
T PRK08589 2 KRLEN-KVAVITGASTGIGQASAIALAQE------GAYVLAVDIA 39 (272)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence 35788 99999995 78999999999998 9999888776
No 466
>PRK07326 short chain dehydrogenase; Provisional
Probab=91.11 E-value=0.64 Score=40.36 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=31.5
Q ss_pred cCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 108 l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
+.| +++.|+| .|.+|..+++.|.+. |++|++..|...
T Consensus 4 ~~~-~~ilItGatg~iG~~la~~l~~~------g~~V~~~~r~~~ 41 (237)
T PRK07326 4 LKG-KVALITGGSKGIGFAIAEALLAE------GYKVAITARDQK 41 (237)
T ss_pred CCC-CEEEEECCCCcHHHHHHHHHHHC------CCEEEEeeCCHH
Confidence 567 8999999 589999999999988 999888877643
No 467
>PRK07774 short chain dehydrogenase; Provisional
Probab=91.11 E-value=2 Score=37.62 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=32.9
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| |++-|.|. |-||.++++.|.+. |++|++..|..
T Consensus 2 ~~~~~-k~vlItGasg~iG~~la~~l~~~------g~~vi~~~r~~ 40 (250)
T PRK07774 2 GRFDD-KVAIVTGAAGGIGQAYAEALARE------GASVVVADINA 40 (250)
T ss_pred cccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 35788 99999995 99999999999998 99988887763
No 468
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=91.11 E-value=0.55 Score=48.76 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=48.9
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH--------CC------ceecCCCcC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------AG------FTEENGTLG 170 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~--------~G------~~~~~~t~~ 170 (281)
....| ++|.|.| .|.||..+++.|.+. |++|++..|...+......+ .| +....+.+.
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 34567 9999999 599999999999998 99998888764432221111 11 111011233
Q ss_pred C---HHhhcCcCCEEEEccC
Q 023490 171 D---IYETISGSDLVLLLIS 187 (281)
Q Consensus 171 ~---~~E~l~~ADVViLavP 187 (281)
+ +++++.++|+||.+.-
T Consensus 149 D~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIG 168 (576)
T ss_pred CHHHHHHHhcCCCEEEEccc
Confidence 3 4456889999998764
No 469
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=91.10 E-value=0.89 Score=41.58 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=46.2
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH--HHHH-C----CceecCCCc---CCHHhhcC
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA--EARA-A----GFTEENGTL---GDIYETIS 177 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~--~A~~-~----G~~~~~~t~---~~~~E~l~ 177 (281)
.| |+|.|.| .|-+|..+++.|.+. |++|++..|....... .... . .+..-.+.. ..++++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 46 8999999 799999999999999 9998877765432111 1110 1 111000111 23567788
Q ss_pred cCCEEEEccC
Q 023490 178 GSDLVLLLIS 187 (281)
Q Consensus 178 ~ADVViLavP 187 (281)
++|+||-+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 9999887654
No 470
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.09 E-value=2.2 Score=37.95 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=58.7
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhh--cCcCCEEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~--l~~ADVViL 184 (281)
-+| .+|.|.|.|.+|.+..+.+++. |.+ |++..+.. +..+.+++.|... ......++. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~~~~~~-~~~~~~~~~g~~~--~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVGVDPDA-ARRELAEALGPAD--PVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEECCCH-HHHHHHHHcCCCc--cccccchhhhcCCCCCEEEE
Confidence 367 8999999999999999999998 887 65554443 3455677777211 011111111 235899998
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
++.... .+.+....++++..++..
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLV 189 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEE
Confidence 776533 455667778887766544
No 471
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.09 E-value=2.2 Score=42.81 Aligned_cols=98 Identities=22% Similarity=0.176 Sum_probs=66.0
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH--HHHC-Cceec-----------------CCCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE--ARAA-GFTEE-----------------NGTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~--A~~~-G~~~~-----------------~~t~~ 170 (281)
|.+|-|+|.|..+--+|..++.. ...+|-+..|...++... +.+. +...+ +....
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~-----~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~ 75 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH-----GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQ 75 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc-----cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhc
Confidence 57899999999999999999976 123566677765443322 2222 11111 12245
Q ss_pred CHHhhcCcCCEEEEccCChhHHHHHH----HHHhcCCCCcEEEEeCCcc
Q 023490 171 DIYETISGSDLVLLLISDAAQADNYE----KIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~~vl~----ei~~~mKpgaILi~aaG~~ 215 (281)
+.+++..+=|.+|||||-.+..++++ +.+..+| ++|.++..|.
T Consensus 76 ~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk--~iVLvSPtfG 122 (429)
T PF10100_consen 76 DYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVK--SIVLVSPTFG 122 (429)
T ss_pred CHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCC--EEEEECcccc
Confidence 67889999999999999999888876 4555554 3666665544
No 472
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.00 E-value=0.67 Score=45.73 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=52.8
Q ss_pred cccCCCcEEEEEcc----------CchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHh
Q 023490 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (281)
Q Consensus 106 ~~l~G~ktIGIIG~----------G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E 174 (281)
..++| ++|+|.|+ .+-...+++.|++. | .+|.+++..-.. .......... ..+++|
T Consensus 316 ~~~~~-~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~------gg~~v~~~DP~~~~-~~~~~~~~~~-----~~~~~~ 382 (415)
T PRK11064 316 KRASE-VKIACFGLAFKPNIDDLRESPAMEIAELIAQW------HSGETLVVEPNIHQ-LPKKLDGLVT-----LVSLDE 382 (415)
T ss_pred cCcCC-CEEEEEeeEECCCCcchhhChHHHHHHHHHhc------CCcEEEEECCCCCc-hhhhccCcee-----eCCHHH
Confidence 34789 99999997 44667888888887 7 888888765321 1111111122 357889
Q ss_pred hcCcCCEEEEccCChhHHH
Q 023490 175 TISGSDLVLLLISDAAQAD 193 (281)
Q Consensus 175 ~l~~ADVViLavP~~~~~~ 193 (281)
++++||+|+++++-.+..+
T Consensus 383 ~~~~ad~vvi~t~~~~~~~ 401 (415)
T PRK11064 383 ALATADVLVMLVDHSQFKA 401 (415)
T ss_pred HHhCCCEEEECCCCHHhcc
Confidence 9999999999999877654
No 473
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=90.99 E-value=2.7 Score=37.31 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=34.6
Q ss_pred ccccccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 101 FKLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 101 f~~~~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
|......++| +++-|.| .|.+|.++++.|.+. |++|++..+.
T Consensus 6 ~~~~~~~l~~-k~vlItGas~gIG~~ia~~l~~~------G~~v~~~~~~ 48 (258)
T PRK06935 6 FSMDFFSLDG-KVAIVTGGNTGLGQGYAVALAKA------GADIIITTHG 48 (258)
T ss_pred hccccccCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence 4434456899 9999999 579999999999998 9998887765
No 474
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.99 E-value=2.4 Score=36.44 Aligned_cols=38 Identities=26% Similarity=0.190 Sum_probs=31.5
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
+++. |+|.|+| .|.+|.++++.|.+. |++|++..+.+.
T Consensus 3 ~~~~-~~vlItGasg~iG~~l~~~l~~~------g~~v~~~~~~~~ 41 (249)
T PRK12825 3 SLMG-RVALVTGAARGLGRAIALRLARA------GADVVVHYRSDE 41 (249)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCCH
Confidence 4566 8999998 699999999999999 999877666543
No 475
>PLN02827 Alcohol dehydrogenase-like
Probab=90.96 E-value=2.1 Score=41.05 Aligned_cols=92 Identities=16% Similarity=0.217 Sum_probs=57.3
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhcC-----cCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETIS-----GSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~---~~~~E~l~-----~AD 180 (281)
+| .++.|+|.|.+|...++.++.. |..+++..+...+..+.+++.|....-... .+..+.+. ..|
T Consensus 193 ~g-~~VlV~G~G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 193 KG-SSVVIFGLGTVGLSVAQGAKLR------GASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 58 9999999999999999999998 985444443333445677888863200000 01222221 479
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCC-cEEEE
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpg-aILi~ 210 (281)
+|+=++-... .+.+.+..++++ -.+++
T Consensus 266 ~vid~~G~~~---~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 266 YSFECVGDTG---IATTALQSCSDGWGLTVT 293 (378)
T ss_pred EEEECCCChH---HHHHHHHhhccCCCEEEE
Confidence 9988877432 345555667676 55543
No 476
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.96 E-value=0.89 Score=47.33 Aligned_cols=74 Identities=24% Similarity=0.201 Sum_probs=51.2
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc--------------------cHHHHHHCCceecCC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------------SFAEARAAGFTEENG 167 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~--------------------s~~~A~~~G~~~~~~ 167 (281)
-.| ++|.|||.|..|-+.|..|... |++|++.++.... ..+...+.|+...-+
T Consensus 191 ~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 191 KSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 367 9999999999999999999998 9999888765310 123345666553212
Q ss_pred Cc----CCHHhhcCcCCEEEEccCC
Q 023490 168 TL----GDIYETISGSDLVLLLISD 188 (281)
Q Consensus 168 t~----~~~~E~l~~ADVViLavP~ 188 (281)
+. .+.++...+.|.|+|++--
T Consensus 264 ~~v~~dv~~~~~~~~~DaVilAtGa 288 (652)
T PRK12814 264 TVFGRDITLEELQKEFDAVLLAVGA 288 (652)
T ss_pred CcccCccCHHHHHhhcCEEEEEcCC
Confidence 21 1344555579999997754
No 477
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=90.95 E-value=1.6 Score=40.42 Aligned_cols=92 Identities=22% Similarity=0.249 Sum_probs=59.9
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViL 184 (281)
-+| .++.|.|.|.+|.++++.+++. |.+|++..+.. +..+.+.+.|....-. ..+ ..+.-...|+|+-
T Consensus 168 ~~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~~-~~~~~~~~~g~~~vi~-~~~~~~~~~~~~~~d~v~~ 238 (337)
T cd05283 168 GPG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRSP-SKKEDALKLGADEFIA-TKDPEAMKKAAGSLDLIID 238 (337)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCCH-HHHHHHHHcCCcEEec-CcchhhhhhccCCceEEEE
Confidence 357 8999999999999999999998 99877666553 3345566666431000 011 1222456899998
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+++... .+.+.+..++++..+++.
T Consensus 239 ~~g~~~---~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 239 TVSASH---DLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred CCCCcc---hHHHHHHHhcCCCEEEEE
Confidence 888642 345556677776655543
No 478
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.94 E-value=0.69 Score=43.53 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=58.9
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
-++++|||--.==-.+++.|.+. |++|.++.-+... . .-.|+.. ....++.++++|+|++++|-..
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~------g~~v~~~g~~~~~---~-~~~~~~~----~~~~~~~~~~~~~~i~p~~~~~ 66 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEEL------DAKISLIGFDQLE---D-GFTGAVK----CELLELDLTTLDVVILPVPGTS 66 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHC------CCEEEEEeccccc---c-cccccee----ecchhhhhccCCEEEECCcccc
Confidence 08999999887778889999988 9988665432110 0 0124443 3456667999999999999432
Q ss_pred HH----------H-HH-HHHHhcCCCCcEEEEeCCcch
Q 023490 191 QA----------D-NY-EKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 191 ~~----------~-vl-~ei~~~mKpgaILi~aaG~~l 216 (281)
.. + .+ ++++..++++++ +..|+.-
T Consensus 67 ~~~~i~~~~~~~~~~l~~~~l~~~~~~~~--~~~G~~~ 102 (287)
T TIGR02853 67 HDGKVATVFSNEKVVLTPELLESTKGHCT--IYVGISN 102 (287)
T ss_pred CCceEecccccCCccccHHHHHhcCCCCE--EEEecCC
Confidence 21 1 24 378888887655 4455553
No 479
>PRK05854 short chain dehydrogenase; Provisional
Probab=90.93 E-value=2.1 Score=39.87 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=33.7
Q ss_pred ccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 105 ~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+.+++| |++-|.| .+-||.++|+.|.+. |++|++..|..
T Consensus 9 ~~~l~g-k~~lITGas~GIG~~~a~~La~~------G~~Vil~~R~~ 48 (313)
T PRK05854 9 VPDLSG-KRAVVTGASDGLGLGLARRLAAA------GAEVILPVRNR 48 (313)
T ss_pred CcccCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 457899 9999999 568999999999998 99998887764
No 480
>PRK07806 short chain dehydrogenase; Provisional
Probab=90.92 E-value=3 Score=36.46 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=31.7
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.+.| +++-|.|. |-+|.++++.|.+. |++|++..|..
T Consensus 3 ~~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 4678 99999995 89999999999988 99988777653
No 481
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=90.90 E-value=0.76 Score=43.82 Aligned_cols=71 Identities=17% Similarity=0.078 Sum_probs=48.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HH----HHHHCCceecCCCcCCHHhhc
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FA----EARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~----~A~~~G~~~~~~t~~~~~E~l 176 (281)
..++| .||++||-+ ++..+++..+..+ |++|.+...+.-.. .+ .+++.|...+ ...+ .+++
T Consensus 143 g~l~g-~kva~vGD~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~d-~~a~ 212 (302)
T PRK14805 143 GDVSK-VKLAYVGDGNNVTHSLMYGAAIL------GATMTVICPPGHFPDGQIVAEAQELAAKSGGKLV--LTSD-IEAI 212 (302)
T ss_pred CCcCC-cEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEE--EEcC-HHHH
Confidence 35889 999999974 7788999998888 99988887654211 11 2333454321 1235 4679
Q ss_pred CcCCEEEEcc
Q 023490 177 SGSDLVLLLI 186 (281)
Q Consensus 177 ~~ADVViLav 186 (281)
+++|+|..-+
T Consensus 213 ~~aDvvy~~~ 222 (302)
T PRK14805 213 EGHDAIYTDT 222 (302)
T ss_pred CCCCEEEeec
Confidence 9999999955
No 482
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=90.89 E-value=2.3 Score=37.95 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=31.3
Q ss_pred cCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 108 l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
++| +++-|+|. |-||.++++.|.+. |++|++.+|..
T Consensus 3 ~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 39 (262)
T TIGR03325 3 LKG-EVVLVTGGASGLGRAIVDRFVAE------GARVAVLDKSA 39 (262)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 678 99999994 68999999999998 99998887754
No 483
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.87 E-value=1.3 Score=41.60 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=30.9
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEec
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r 148 (281)
+..|++ ++|.|||+|-+|..+|.+|... |. ++.+.+.
T Consensus 25 ~~kL~~-s~VlVvG~GGVGs~vae~Lar~------GVg~itLiD~ 62 (268)
T PRK15116 25 LQLFAD-AHICVVGIGGVGSWAAEALART------GIGAITLIDM 62 (268)
T ss_pred HHHhcC-CCEEEECcCHHHHHHHHHHHHc------CCCEEEEEeC
Confidence 467889 9999999999999999999988 74 5555553
No 484
>PRK07478 short chain dehydrogenase; Provisional
Probab=90.86 E-value=2.2 Score=37.67 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=32.0
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+++| |++-|.| .|-||.++++.|.+. |++|++..|..
T Consensus 3 ~~~~-k~~lItGas~giG~~ia~~l~~~------G~~v~~~~r~~ 40 (254)
T PRK07478 3 RLNG-KVAIITGASSGIGRAAAKLFARE------GAKVVVGARRQ 40 (254)
T ss_pred CCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 5788 9999999 578999999999998 99988887764
No 485
>PLN02477 glutamate dehydrogenase
Probab=90.86 E-value=0.35 Score=48.12 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=31.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r 148 (281)
.+++| ++|.|.|+|++|+.+|+.|.+. |.+|+ +.+.
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVVaVsD~ 238 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIVAVSDI 238 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEECC
Confidence 47999 9999999999999999999998 99887 4443
No 486
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.84 E-value=2.1 Score=37.57 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=32.8
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| +++-|.|. |.+|.++++.|.+. |++|++..|..
T Consensus 3 ~~~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (262)
T PRK13394 3 SNLNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQ 41 (262)
T ss_pred ccCCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCh
Confidence 34778 99999995 99999999999998 99988777764
No 487
>PRK12937 short chain dehydrogenase; Provisional
Probab=90.83 E-value=2.3 Score=37.04 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=31.3
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.++| +++-|+| .|-+|.++|+.|.+. |++|++..++.
T Consensus 2 ~~~~-~~vlItG~~~~iG~~la~~l~~~------g~~v~~~~~~~ 39 (245)
T PRK12937 2 TLSN-KVAIVTGASRGIGAAIARRLAAD------GFAVAVNYAGS 39 (245)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCCC
Confidence 4678 9999999 589999999999998 99887766553
No 488
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=90.78 E-value=1.1 Score=43.43 Aligned_cols=71 Identities=13% Similarity=-0.013 Sum_probs=48.5
Q ss_pred cc-CCCcEEEEEccC-------chHHHHHHHHHhhhhhccCCcEEEEEec-CCcc----cHH----HHHHCCceecCCCc
Q 023490 107 AF-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSR----SFA----EARAAGFTEENGTL 169 (281)
Q Consensus 107 ~l-~G~ktIGIIG~G-------~mG~AiA~~Lra~~~~~~~G~~Viig~r-~~~~----s~~----~A~~~G~~~~~~t~ 169 (281)
.+ +| .||+|++.| ++..+++..+..+ |++|.+... +.-. -.+ .+.+.|...+ ..
T Consensus 165 ~~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~--~~ 235 (335)
T PRK04523 165 TTLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLT--VS 235 (335)
T ss_pred CccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEE--EE
Confidence 47 78 899776543 6888998888888 999888876 4211 122 2234453221 14
Q ss_pred CCHHhhcCcCCEEEEcc
Q 023490 170 GDIYETISGSDLVLLLI 186 (281)
Q Consensus 170 ~~~~E~l~~ADVViLav 186 (281)
.+++|+++++|+|..-.
T Consensus 236 ~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 236 HDIDSAYAGADVVYAKS 252 (335)
T ss_pred cCHHHHhCCCCEEEece
Confidence 68999999999999854
No 489
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=90.65 E-value=2.1 Score=37.84 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=32.5
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.++| |++.|.| .|.+|.++++.|.+. |++|++..|..
T Consensus 7 ~~~~-k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTG-RRALVTGSSQGIGYALAEGLAQA------GAEVILNGRDP 44 (255)
T ss_pred CCCC-CEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 5789 9999999 589999999999998 99988877653
No 490
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.56 E-value=0.87 Score=45.39 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=42.4
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
-.| ++|+|+|+|.-|.+.++.|+ . |.+|++.+++... .....+. ..... .....+.+.+.|+|++
T Consensus 4 ~~~-~~v~v~G~G~sG~a~~~~L~-~------g~~v~v~D~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~d~vV~ 69 (454)
T PRK01368 4 HTK-QKIGVFGLGKTGISVYEELQ-N------KYDVIVYDDLKAN-RDIFEELYSKNAI---AALSDSRWQNLDKIVL 69 (454)
T ss_pred CCC-CEEEEEeecHHHHHHHHHHh-C------CCEEEEECCCCCc-hHHHHhhhcCcee---ccCChhHhhCCCEEEE
Confidence 357 99999999999999999998 6 8999888854322 1111111 11110 1112355778999888
No 491
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=90.54 E-value=2.7 Score=37.33 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=32.1
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| |++-|+| .|-||.++|+.|.+. |++|++..+..
T Consensus 3 ~~~~~-k~~lItGa~~gIG~~ia~~l~~~------G~~vvi~~~~~ 41 (261)
T PRK08936 3 SDLEG-KVVVITGGSTGLGRAMAVRFGKE------KAKVVINYRSD 41 (261)
T ss_pred cCCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCC
Confidence 35789 9999999 678999999999998 99887776643
No 492
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=90.43 E-value=2.1 Score=39.12 Aligned_cols=88 Identities=17% Similarity=0.108 Sum_probs=59.4
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
+| .++.|.|.|.+|.++++.++.. |.+|++..+.. +..+.+++.|.... ....+..-+..|+++.+.+.
T Consensus 167 ~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~~---~~~~~~~~~~vD~vi~~~~~ 235 (329)
T cd08298 167 PG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADWA---GDSDDLPPEPLDAAIIFAPV 235 (329)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcEE---eccCccCCCcccEEEEcCCc
Confidence 56 8999999999999999999988 98877666554 34455667775320 11111112457888887664
Q ss_pred hhHHHHHHHHHhcCCCCcEEEE
Q 023490 189 AAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~ 210 (281)
. ..+++....++++..+++
T Consensus 236 ~---~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 236 G---ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred H---HHHHHHHHHhhcCCEEEE
Confidence 3 356677788888776654
No 493
>PRK12829 short chain dehydrogenase; Provisional
Probab=90.42 E-value=1.6 Score=38.36 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=32.9
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..+++ +++.|+| .|.+|..+++.|.+. |++|++..|..
T Consensus 7 ~~~~~-~~vlItGa~g~iG~~~a~~L~~~------g~~V~~~~r~~ 45 (264)
T PRK12829 7 KPLDG-LRVLVTGGASGIGRAIAEAFAEA------GARVHVCDVSE 45 (264)
T ss_pred hccCC-CEEEEeCCCCcHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 45789 9999999 689999999999998 99988777753
No 494
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.33 E-value=2.4 Score=40.23 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=57.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc-----CcCCE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSDL 181 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l-----~~ADV 181 (281)
.| .+|.|+|.|.+|...++.++.. |. +|++.++. ++..+.+++.|.... +....+..+.+ ...|+
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~~~~~-~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVAVDLN-EDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEEcCC-HHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 57 8999999999999999999998 98 46555544 344667778886321 00001211211 14799
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
|+-++.... .+...+..++++..++.
T Consensus 263 vid~~G~~~---~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 263 AFEMAGSVP---ALETAYEITRRGGTTVT 288 (371)
T ss_pred EEECCCChH---HHHHHHHHHhcCCEEEE
Confidence 998886432 34444556777665543
No 495
>PRK05876 short chain dehydrogenase; Provisional
Probab=90.31 E-value=2.1 Score=38.92 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=33.4
Q ss_pred ccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 105 ~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
|.+++| |++-|.| .|-||.++|+.|.+. |++|++.++..
T Consensus 1 ~~~~~~-k~vlVTGas~gIG~ala~~La~~------G~~Vv~~~r~~ 40 (275)
T PRK05876 1 MDGFPG-RGAVITGGASGIGLATGTEFARR------GARVVLGDVDK 40 (275)
T ss_pred CCCcCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 356889 9999998 779999999999998 99988887663
No 496
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=90.28 E-value=0.71 Score=45.38 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=49.9
Q ss_pred cEEEEEcc-CchHHHHHHHHH-hhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCH-H-hhcCcCCEEEEcc
Q 023490 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lr-a~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~-~-E~l~~ADVViLav 186 (281)
++|||||+ |..|+.+.+.|. .. .|-. ++.......+ ... ...+..+.....+. + +.+++.|+++.+.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~----~fp~~~~~~~ss~~s--~g~--~~~f~~~~~~v~~~~~~~~~~~vDivffa~ 72 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER----DFDAIRPVFFSTSQL--GQA--APSFGGTTGTLQDAFDIDALKALDIIITCQ 72 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC----CCccccEEEEEchhh--CCC--cCCCCCCcceEEcCcccccccCCCEEEEcC
Confidence 58999995 999999999888 44 1121 2333322111 000 01110000011122 2 3678999999999
Q ss_pred CChhHHHHHHHHHhcCCCC--cEEEEeCC
Q 023490 187 SDAAQADNYEKIFSCMKPN--SILGLSHG 213 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpg--aILi~aaG 213 (281)
+.....++..+.. +.| +++|+.++
T Consensus 73 g~~~s~~~~p~~~---~aG~~~~VIDnSS 98 (366)
T TIGR01745 73 GGDYTNEIYPKLR---ESGWQGYWIDAAS 98 (366)
T ss_pred CHHHHHHHHHHHH---hCCCCeEEEECCh
Confidence 8765444544432 357 67777665
No 497
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=90.26 E-value=0.44 Score=43.19 Aligned_cols=66 Identities=17% Similarity=0.065 Sum_probs=43.7
Q ss_pred EEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhc------Cc-CCE
Q 023490 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETI------SG-SDL 181 (281)
Q Consensus 113 tIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~---~~~E~l------~~-ADV 181 (281)
+|.|+|. |.+|+.+++.|.+. |++|.+..|..++.. ..++......+. ++.+++ +. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 4778885 99999999999998 999998888754211 112111001122 344555 45 899
Q ss_pred EEEccCC
Q 023490 182 VLLLISD 188 (281)
Q Consensus 182 ViLavP~ 188 (281)
|+++.|.
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988875
No 498
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=90.25 E-value=5.8 Score=30.66 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=52.8
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH----HCCc---eecCCCcCC-HHhhcCcCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGF---TEENGTLGD-IYETISGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~----~~G~---~~~~~t~~~-~~E~l~~AD 180 (281)
.+ ++|.-||+|. |.-....++.. .+.+|+ +.+......+.++ ..+. ....+.... .....+..|
T Consensus 19 ~~-~~vldlG~G~-G~~~~~l~~~~-----~~~~v~-~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGS-GSITIEAARLV-----PNGRVY-AIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCC-CHHHHHHHHHC-----CCceEE-EEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 46 8899999988 44333333332 023554 4444333333332 2222 110000001 123346899
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
+|++..+.....++++++.+.||||..+++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987766666788999999999987764
No 499
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=90.22 E-value=2.8 Score=36.67 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=31.6
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
+|+| |++-|.|. |.||.++|+.|.+. |++|++..|.
T Consensus 2 ~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~vi~~~r~ 38 (248)
T TIGR01832 2 SLEG-KVALVTGANTGLGQGIAVGLAEA------GADIVGAGRS 38 (248)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCc
Confidence 3788 99999996 79999999999998 9998877765
No 500
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.20 E-value=1.2 Score=43.78 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=47.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHHHHCCceecCCCcC-CHHhhcCcCCEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLG-DIYETISGSDLVL 183 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A~~~G~~~~~~t~~-~~~E~l~~ADVVi 183 (281)
..+.|+++|.|||+|..|.+.++.|... +-|++|.+.+...... .+.. +.|+... .. ...+.+.++|+|+
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~~~l~~~----~~~~~v~~~D~~~~~~~~~~l-~~g~~~~---~g~~~~~~~~~~d~vV 73 (438)
T PRK04663 2 DRWQGIKNVVVVGLGITGLSVVKHLRKY----QPQLTVKVIDTRETPPGQEQL-PEDVELH---SGGWNLEWLLEADLVV 73 (438)
T ss_pred CcccCCceEEEEeccHHHHHHHHHHHhc----CCCCeEEEEeCCCCchhHHHh-hcCCEEE---eCCCChHHhccCCEEE
Confidence 3456668899999999999999999876 1126788777543221 1122 2366531 11 1234568899888
Q ss_pred E--ccCC
Q 023490 184 L--LISD 188 (281)
Q Consensus 184 L--avP~ 188 (281)
. ++|+
T Consensus 74 ~SpgI~~ 80 (438)
T PRK04663 74 TNPGIAL 80 (438)
T ss_pred ECCCCCC
Confidence 7 3444
Done!