RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023490
(281 letters)
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein);
rossmann fold, NADPH, knotted protein, branched-chain
amino biosynthesis; 1.55A {Oryza sativa japonica group}
PDB: 3fr8_A* 1qmg_A* 1yve_I*
Length = 525
Score = 285 bits (732), Expect = 5e-94
Identities = 173/196 (88%), Positives = 185/196 (94%)
Query: 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +E+IVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQ 267
KEINGAGINSSFAVHQ
Sbjct: 195 KEINGAGINSSFAVHQ 210
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain oxidoreductase; 2.00A
{Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Length = 338
Score = 123 bits (311), Expect = 2e-33
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 20/155 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NL+DS + V VGLR GS + A+A A G + D+
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67
Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
++ +D+V++L D Q Y++ I +K + L +HGF + H + ++ V
Sbjct: 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQV--VPRADLDV 124
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
I + PK G +VR +V+G GI A++Q
Sbjct: 125 IMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQ 154
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 119 bits (299), Expect = 8e-31
Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 24/159 (15%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
+ ++G G+QG Q N+RDS + + LRK + S+ +A GF
Sbjct: 40 VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK 228
+G E I +DLV+ L D +D + MK + LG SHGF + K
Sbjct: 89 VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNI-VEVGE--QIRK 145
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
+I V+ V PK G VR Y +G G+ + AVH
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHP 179
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 55.5 bits (133), Expect = 4e-09
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 20/129 (15%)
Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ ++G G G + + DS + + G L D
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSIGLDFPKNI 230
I +D+V+L + D E I ++P +I+ + G + +I
Sbjct: 62 DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116
Query: 231 GVIAVCPKG 239
P
Sbjct: 117 TYFIGHPCH 125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 8e-06
Identities = 56/290 (19%), Positives = 92/290 (31%), Gaps = 90/290 (31%)
Query: 15 FSPSPSSET-LKGAFKHLNLAF---------FSSTAKSLRALKTTRGRGSALGAQMASET 64
+ + S E+ K + + F + +T+ L+ + + + M S +
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 65 ALKTPFLLDF------ETSVFKKDAISLAN-RDEFIVRGG-RDLFKLLPD-----AFNGI 111
L + D+ K+ ISL N +V G + L+ L A +G+
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 112 NQIGVIGWGSQGPAQAQNLRDS--------------LAEAKSDIVVKVGLRKGSRSFAEA 157
+Q S+ P + L+ S L A I L K + SF A
Sbjct: 403 DQ-------SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI--NKDLVKNNVSFN-A 452
Query: 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCM--KP-----NSILGL 210
+ +Y+T GSDL E+I C+ P +
Sbjct: 453 KDIQIP--------VYDTFDGSDL------RVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 211 SHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259
+H I LDF P G + G+G R G G +
Sbjct: 499 TH---------I-LDFGP---GGAS----GLGVLTHRN-KDGT---GVRV 527
Score = 45.8 bits (108), Expect = 1e-05
Identities = 56/327 (17%), Positives = 94/327 (28%), Gaps = 102/327 (31%)
Query: 4 GTLPSSPSIPKFSPSPSSETLKGAFKHLNLAFFSSTAKSLRALKTTRGRGSALGAQMASE 63
G+L +P + + L+ F K L G A + +
Sbjct: 14 GSLEHVLLVPT-ASFFIASQLQEQF-----------NKIL----PEPTEGFAADDEPTTP 57
Query: 64 TALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAF-------NGINQIGV 116
L FL + +S+ + + + L F N I+ +
Sbjct: 58 AELVGKFL-GYVSSLVEPSKVGQF----------DQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 117 IGWGSQGPAQAQNLRDSLAEA--KSDIVVKVGLRKGSRS-FAEARAAG------------ 161
+ L + + I+ K K S S A G
Sbjct: 107 KLLQENDTTLVK--TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 162 -----FTEENGTLGDIYETISGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSIL 208
F E L D+Y+T LV LI +A+ + EK+F+
Sbjct: 165 NTDDYFEE----LRDLYQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFT-------- 210
Query: 209 GLSHGFLL-------------GHLQSIGLDFPKNIGV------IAVCPK-GMGPSVRRLY 248
G + +L SI + P IGV + G P R Y
Sbjct: 211 ---QGLNILEWLENPSNTPDKDYLLSIPISCPL-IGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 249 VQGKEINGAGINSSFAVHQVLSEPLFH 275
++G + G+ ++ A+ + S F
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFF 293
Score = 34.6 bits (79), Expect = 0.033
Identities = 33/209 (15%), Positives = 51/209 (24%), Gaps = 98/209 (46%)
Query: 120 GSQGPAQAQNLRDSLAEAK------------------SDIV--------VKVGLRKGSR- 152
GSQ +L + A+ DIV + G KG R
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 153 ----------SFAEARAAG---FTEENGTLGDIYETISGSDLVL----------LLISDA 189
+ + + F E N T +L L+ A
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSY--TFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIG-----------LDF------------ 226
F +K ++ F GH S+G +
Sbjct: 1743 --------AFEDLKSKGLIPADATF-AGH--SLGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 227 ------PK------NIGVIAVCPKGMGPS 243
P+ N G+IA+ P + S
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Score = 27.7 bits (61), Expect = 5.3
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 25/123 (20%)
Query: 33 LAFFSSTAKSLR---ALKTTRGRGSALGAQMASETALKTPFLL-----DFETSVFKKDAI 84
LA S A + ++ RG + + + ++ + + + F ++A+
Sbjct: 1770 LA---SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 85 SLANRDEFIVRGGRDLFKLLPDA-FNGINQIGVIGWGSQGPAQA----QNLRDSLAEAKS 139
+ R G+ L+ +N NQ V G +A N+ + + K
Sbjct: 1827 -----QYVVERVGKRTGWLVEIVNYNVENQQYVAA----GDLRALDTVTNVLNFIKLQKI 1877
Query: 140 DIV 142
DI+
Sbjct: 1878 DII 1880
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 6e-05
Identities = 28/263 (10%), Positives = 74/263 (28%), Gaps = 88/263 (33%)
Query: 41 KSLRALKTTRG------RGSALGAQ-MASETALKTPFLLDFETSVFKKDAISLANRDEFI 93
++L L+ + GS G +A + L + +F ++L N +
Sbjct: 142 QALLELRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNS-- 194
Query: 94 VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS-------------- 139
+ ++L I+ + + N++ + ++
Sbjct: 195 ---PETVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 140 -----DI----VVK--------------------VGLRKGSRSFAEARAAGFTEE----- 165
++ + + + + T +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 166 -----NGTLGDI-YETISGSDLVLLLIS-----DAAQADNYEKIFSCMKPNSILGLSHGF 214
+ D+ E ++ + L +I+ A DN++ + +C K +I+ S
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESSLNV 365
Query: 215 L-----LGHLQSIGLDFPKNIGV 232
L + + FP + +
Sbjct: 366 LEPAEYRKMFDRLSV-FPPSAHI 387
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 42.1 bits (98), Expect = 1e-04
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
+ V G G+ + AE + + L +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
+ D ISG+D+V+L + A ++ + ++ ++++ Q
Sbjct: 65 VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124
Query: 221 SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
+ +++ P R+ G+++ G S A
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 34.9 bits (80), Expect = 0.023
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
I IG+G + A L + + LR + + A A E D
Sbjct: 26 TIAFIGFGEAAQSIAGGLGG----RNAARLAAYDLRFNDPAASGALRARAAELGVEPLDD 81
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIL 208
I+ +D+VL L+ AA + ++
Sbjct: 82 VAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVF 117
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 32.9 bits (74), Expect = 0.090
Identities = 13/114 (11%), Positives = 29/114 (25%), Gaps = 11/114 (9%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +G G+ + L+D + + SRS AR G +
Sbjct: 5 LNFVGTGTLTRFFLECLKDRYE------IGYIL----SRSIDRARNLA-EVYGGKAATLE 53
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFP 227
+ + +V +++ D + + P
Sbjct: 54 KHPELNGVVFVIVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHP 107
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 31.9 bits (72), Expect = 0.14
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 12/80 (15%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+G++G G + A L S V V GSR+ R A +
Sbjct: 31 VGILGSGDFARSLATRL------VGSGFKVVV----GSRNP--KRTARLFPSAAQVTFQE 78
Query: 174 ETISGSDLVLLLISDAAQAD 193
E +S +++ + + +
Sbjct: 79 EAVSSPEVIFVAVFREHYSS 98
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 31.0 bits (70), Expect = 0.37
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+G IG+G A A L +A + + A G + +
Sbjct: 27 LGFIGFGEAASAIASGL----RQAGAIDMAAYDAASAESWRPRAEELGVS----CKASVA 78
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIL 208
E D++ L++ A + ++ + ++
Sbjct: 79 EVAGECDVIFSLVTAQAALEVAQQAGPHLCEGALY 113
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 30.1 bits (67), Expect = 0.77
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I +IG G+ A+ L K +V+V SR+ AR E D+
Sbjct: 13 IVLIGAGNLATNLAKALY-----RKGFRIVQVY----SRTEESARELAQKVEAEYTTDLA 63
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213
E + L ++ + D+A A+ + I + +++ + G
Sbjct: 64 EVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAG 103
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken
structural genomics/PR initiative, RSGI, NPPSFA; 1.95A
{Thermus thermophilus}
Length = 415
Score = 28.3 bits (64), Expect = 3.4
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 53 GSALGAQMASETALKTPFL 71
GSALG + A +
Sbjct: 76 GSALGPKALEA-AFNESGV 93
>1unf_X Iron superoxide dismutase; oxidoreductase, eukaryotic,
metalloprotein; 1.97A {Vigna unguiculata} SCOP: a.2.11.1
d.44.1.1
Length = 238
Score = 27.3 bits (61), Expect = 5.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 165 ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN 205
+ +L +I T +L ++AAQ N++ + CMKP
Sbjct: 65 DGKSLEEIIVTAYNKGDILPAFNNAAQVWNHDFFWECMKPG 105
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Length = 460
Score = 27.6 bits (62), Expect = 5.7
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 53 GSALGAQMASETALKTPFLLDFETSVFKKDAI 84
GS LG +L+ + A
Sbjct: 88 GSGLGNLALHY-SLRPLNWNEMTREERNGYAR 118
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 27.5 bits (61), Expect = 5.9
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYE-----KIFSCMKPNSILGLSHGFLLGHLQSIG 223
+ + IS D+V I + Q + + S + P S + G + G +
Sbjct: 345 VAEAANCISLGDIVEKKIRSSEQ--LWSLLPLHAVLSSVYPASKV---AGHMAGRIN--- 396
Query: 224 LDFPKNIG 231
F +G
Sbjct: 397 --FTAWLG 402
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 26.8 bits (60), Expect = 7.9
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG--TLGD 171
+G IG G A A+ + A I+ S + + G
Sbjct: 25 VGFIGAGQLAFALAKGFTAAGVLAAHKIMA-------SSPDMDLATVSALRKMGVKLTPH 77
Query: 172 IYETISGSDLVLL 184
ET+ SD++ L
Sbjct: 78 NKETVQHSDVLFL 90
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein
complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB:
1aii_A
Length = 323
Score = 26.8 bits (59), Expect = 8.4
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 1 MVAGTLPSSPSIPKFSPSPSSETLKGAFKHL 31
+ G + P FSPS +E ++ A + +
Sbjct: 4 IWVGHRGTVRDYPDFSPSVDAEAIQKAIRGI 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.388
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,138,342
Number of extensions: 253242
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 26
Length of query: 281
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 189
Effective length of database: 4,133,061
Effective search space: 781148529
Effective search space used: 781148529
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)