RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 023490
         (281 letters)



>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase
           (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}
          Length = 226

 Score =  247 bits (631), Expect = 4e-83
 Identities = 165/200 (82%), Positives = 184/200 (92%)

Query: 68  TPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQA 127
           +    DF++SVFKK+ ++L+  DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQA
Sbjct: 1   SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60

Query: 128 QNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187
           QNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLIS
Sbjct: 61  QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120

Query: 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247
           D+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSVRRL
Sbjct: 121 DSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRL 180

Query: 248 YVQGKEINGAGINSSFAVHQ 267
           YVQGKE+NGAGINSSFAVHQ
Sbjct: 181 YVQGKEVNGAGINSSFAVHQ 200


>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
           (KARI) {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 182

 Score =  122 bits (307), Expect = 6e-35
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 20/156 (12%)

Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
           ++ +IG+GSQG A A NL+D      S + V VGLR GS + A+A A G         D+
Sbjct: 18  KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGSATVAKAEAHGLKV-----ADV 66

Query: 173 YETISGSDLVLLLISDAAQADNYEKIF-SCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
              ++ +D+V++L  D  Q   Y++     +K  + L  +HGF + + Q        ++ 
Sbjct: 67  KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQV---VPRADLD 123

Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
           VI + PK  G +VR  +V+G       I    A++Q
Sbjct: 124 VIMIAPKAPGHTVRSEFVKGGG-----IPDLIAIYQ 154


>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
           dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
          Length = 184

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 114 IGVIGWGSQGPAQAQNLRDSLAE----AKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169
             V+G G+ G A A  L                +K    +G+        AG    +   
Sbjct: 4   YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT 63

Query: 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
            DI   +  +D++L+++     A     I S +    ++ L+ G   G L+
Sbjct: 64  SDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALE 114


>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
           {Archaeon Methanobacterium thermoautotrophicum [TaxId:
           145262]}
          Length = 152

 Score = 26.7 bits (58), Expect = 2.4
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 113 QIGVIGWGSQGPAQAQNLRDS 133
           ++G IG+G      A  LR  
Sbjct: 2   RVGFIGFGEVAQTLASRLRSR 22


>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 162

 Score = 26.0 bits (56), Expect = 3.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 111 INQIGVIGWGSQGPAQAQNLRDS 133
           + QI  IG G  G   A NL  +
Sbjct: 1   MKQIAFIGLGHMGAPMATNLLKA 23


>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 343

 Score = 26.1 bits (57), Expect = 5.6
 Identities = 8/28 (28%), Positives = 10/28 (35%)

Query: 4  GTLPSSPSIPKFSPSPSSETLKGAFKHL 31
          G   +    P F+PS   E L  A    
Sbjct: 30 GPGSAVSPYPTFNPSSDVEALHKAITVK 57


>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase
           {Trypanosoma brucei [TaxId: 5691]}
          Length = 178

 Score = 25.4 bits (54), Expect = 6.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 113 QIGVIGWGSQGPAQAQNLRDS 133
            +GV+G G  G   A N+ + 
Sbjct: 3   DVGVVGLGVMGANLALNIAEK 23


>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 161

 Score = 25.1 bits (54), Expect = 8.7
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 15/100 (15%)

Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
           ++G IG G  G   ++N    L +A   +VV     +                  T    
Sbjct: 2   KVGFIGLGIMGKPMSKN----LLKAGYSLVVSDRNPEAIADVIA-------AGAETASTA 50

Query: 173 YETISGSDLVLLLISDAAQADN----YEKIFSCMKPNSIL 208
                  D+++ ++ ++            I    KP ++L
Sbjct: 51  KAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVL 90


>d1axna_ a.65.1.1 (A:) Annexin III {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 323

 Score = 25.3 bits (55), Expect = 8.9
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 1  MVAGTLPSSPSIPKFSPSPSSETLKGAFKHL 31
          +  G   +    P FSPS  +E ++ A + +
Sbjct: 4  IWVGHRGTVRDYPDFSPSVDAEAIQKAIRGI 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0470    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 963,681
Number of extensions: 42668
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 10
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)