BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023491
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 4 PAAP-ANKIER----AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH 58
PA P A+ +E+ ++L++ G Y AL YT+AL + Q + LH NRAAC+LKL
Sbjct: 20 PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE 79
Query: 59 DFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ 115
D+ KA E + +E D AL R+Q L L + A+ D+ R + L P ++V+Q
Sbjct: 80 DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 22 RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL 81
RY E E AK++ ++ N AC LK+ D++ A + C LE+D ++T AL
Sbjct: 251 RYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKAL 310
Query: 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125
RAQ LKEY+ AL D+ + E+ P + Q ++K ++
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 12 ERAHQLYRDGRYEEALGFYTEALS------------VAKIKQQKIALHSNRAACYLKLHD 59
ER +++G+Y++AL Y + +S K + ++A H N A C+LKL
Sbjct: 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211
Query: 60 FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN--- 116
F A E C LELD N+ L R + + + ++ A D ++++L P+++ +
Sbjct: 212 FSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271
Query: 117 -LQARLKTQLS 126
Q R++ QL+
Sbjct: 272 VCQQRIRRQLA 282
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 12 ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
++ +Q +R+ +Y++A+ +Y AL + ++ +SN +ACY+ + D KK E T L
Sbjct: 11 DKGNQFFRNKKYDDAIKYYNWALEL----KEDPVFYSNLSACYVSVGDLKKVVEMSTKAL 66
Query: 72 ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRL 104
EL +++ L+ RA L ++ A+FD++ L
Sbjct: 67 ELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 12 ERAHQLYRDGRYEEALGFYTEALS------------VAKIKQQKIALHSNRAACYLKLHD 59
ER +++G+Y++AL Y + +S K + ++A H N A C+LKL
Sbjct: 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211
Query: 60 FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN--- 116
F A E C LELD N+ L R + + + ++ A D ++++L P+++ +
Sbjct: 212 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271
Query: 117 -LQARLKTQLS 126
Q R++ QL+
Sbjct: 272 VCQQRIRRQLA 282
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
+ ++ ++ G Y A+ Y EA+ K + L+SNRAAC KL +F++A ++C + +
Sbjct: 19 KGNEYFKKGDYPTAMRHYNEAV---KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR 75
Query: 73 LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE 112
LD + +A LV ++E++ A ++++PS+E
Sbjct: 76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 17/127 (13%)
Query: 12 ERAHQLYRDGRYEEALGFYTEALSVAKI------KQQK------IALHSNRAACYLKLHD 59
E+ ++ G+Y +A+ Y + +S ++ K+ K +A N A CYLKL +
Sbjct: 273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE 332
Query: 60 FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119
+ KA E C L LD + L R + + + E+ SA D +++E+NP QN A
Sbjct: 333 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-----QNKAA 387
Query: 120 RLKTQLS 126
RL+ +
Sbjct: 388 RLQISMC 394
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNR 103
+A N A CYLKL ++ KA E C L LD + L R + + + E+ SA D +
Sbjct: 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK 376
Query: 104 LIELNPSSEVYQNLQARLK 122
++E+NP QN ARL+
Sbjct: 377 VLEVNP-----QNKAARLQ 390
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
+ ++ ++ G Y +A+ YTEA+ K + L+SNRAACY KL +F+ A ++C ++
Sbjct: 22 KGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 78
Query: 73 LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE 112
L+ +A L +K+Y A+ + ++L+ S +
Sbjct: 79 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
R + + + EA+ +Y A+ ++ + +SN +ACY+ D +K E T LE
Sbjct: 31 RGNHFFTAKNFNEAIKYYQYAI---ELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 73 LDYNHTGALMLRAQTLVTLKEYNSALFDVNRL 104
+ +H+ AL+ RA +L + A+FD++ L
Sbjct: 88 IKPDHSKALLRRASANESLGNFTDAMFDLSVL 119
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
R + + + EA+ +Y A+ ++ + +SN +ACY+ D +K E T LE
Sbjct: 27 RGNHFFTAKNFNEAIKYYQYAI---ELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 83
Query: 73 LDYNHTGALMLRAQTLVTLKEYNSALFDVNRL 104
+ +H+ AL+ RA +L + A+FD++ L
Sbjct: 84 IKPDHSKALLRRASANESLGNFTDAMFDLSVL 115
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 7 PANKIERAHQL----YRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK 62
P N E L Y+ G Y++A+ +Y +AL ++ + N Y K D++K
Sbjct: 5 PGNSAEAWKNLGNAYYKQGDYQKAIEYYQKAL---ELDPNNASAWYNLGNAYYKQGDYQK 61
Query: 63 AAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS 111
A E LELD N+ A R +Y A+ D + +EL+P++
Sbjct: 62 AIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 1 MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALH-SNRAACYLKLHD 59
M SP+A K E+ ++L+ +Y EA Y A++ + +A++ +NRA CYLK+
Sbjct: 4 MKSPSAQELK-EQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQ 58
Query: 60 FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107
++A +C LELD A Q + ++ Y+ A+ ++ R L
Sbjct: 59 PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALH-SNRAACYLKLHDFK 61
SP+A K E+ ++L+ +Y EA Y A++ + +A++ +NRA CYLK+ +
Sbjct: 1 SPSAQELK-EQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPE 55
Query: 62 KAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107
+A +C LELD A Q + ++ Y+ A+ ++ R L
Sbjct: 56 QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 7 PANKIERAHQL----YRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK 62
P N E + L Y+ G Y+EA+ +Y +AL ++ N Y K D+ +
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKAL---ELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 63 AAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
A E LELD N+ A +Y+ A+ + +EL+P ++E QNL
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
+A+ ++ YE A+ FY++A+ ++ + NR+ YL+ + A + T +E
Sbjct: 27 QANDYFKAKDYENAIKFYSQAI---ELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIE 83
Query: 73 LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
LD + RA + + L ++ +AL D ++++ P
Sbjct: 84 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 120
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 47 HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSAL 98
+SNRAA KL F +A +C +E D N A + +A + +KEY SAL
Sbjct: 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 92
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
+A+ ++ YE A+ FY++A+ ++ + NR+ YL+ + A + T +E
Sbjct: 19 QANDYFKAKDYENAIKFYSQAI---ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 75
Query: 73 LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124
LD + RA + + L ++ +AL D ++++ P + A++K Q
Sbjct: 76 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-----HDKDAKMKYQ 122
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72
+A+ ++ YE A+ FY++A+ ++ + NR+ YL+ + A + T +E
Sbjct: 12 QANDYFKAKDYENAIKFYSQAI---ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 68
Query: 73 LDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109
LD + RA + + L ++ +AL D ++++ P
Sbjct: 69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 105
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 47 HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSAL 98
+SNRAA KL F +A +C +E D N A + +A + +KEY SAL
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 23 YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82
+E A+ FY +A+ ++ NRAA Y KL ++ A ++C + +D ++ A
Sbjct: 28 FEAAVHFYGKAI---ELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84
Query: 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN 116
L +L ++ A+ + +EL+P +E Y++
Sbjct: 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKS 118
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 12 ERAHQLYRDGRYEEALGFYTEALSVAK---------------IKQQKIALHSNRAACYLK 56
+ ++LYR+G +EA Y +A++ K + QQ L N C L
Sbjct: 19 QEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLV 78
Query: 57 LHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-----S 111
+ ++ + + C+S+L ++ A R + + A D +++EL+P+ S
Sbjct: 79 VEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPVVS 138
Query: 112 EVYQNLQARLK 122
Q L+AR++
Sbjct: 139 RELQALEARIR 149
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 12 ERAHQLYRDGRYEEALGFYTEALSVAK---------------IKQQKIALHSNRAACYLK 56
+ ++LYR+G +EA Y +A++ K + QQ L N C L
Sbjct: 13 QEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLV 72
Query: 57 LHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-----S 111
+ ++ + + C+S+L ++ A R + + A D +++EL+P+ S
Sbjct: 73 VEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPVVS 132
Query: 112 EVYQNLQARLK 122
Q L+AR++
Sbjct: 133 RELQALEARIR 143
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 11 IERAHQLYRDGRYEEALGFYTEALSVA-KIKQQKIALHSNRAACYLKLHDFKKAAEECTS 69
IE A +L RDGRY +A Y + I + + C+ K +A C+
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320
Query: 70 VLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE 112
VL+++ ++ AL RA+ + + Y+ A+ D E N + +
Sbjct: 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 17 LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76
Y+ G Y+EA+ +Y +AL ++ + N Y K D+ +A E LELD
Sbjct: 11 YYKQGDYDEAIEYYQKAL---ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 77 HTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
A +Y+ A+ + +EL+P S+E + NL
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 7 PANKIERAHQL----YRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK 62
P N E + L Y+ G Y+EA+ +Y +AL ++ N Y K D+ +
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKAL---ELYPNNAEAWYNLGNAYYKQGDYDE 61
Query: 63 AAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNL 117
A E LEL N+ A +Y+ A+ + +EL P ++E QNL
Sbjct: 62 AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNL 117
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAA-----CYLKLHDFKKAAE 65
IE A +L RDGRY +A Y SV K + IA ++ R+ C+ K +A
Sbjct: 261 IESAEELIRDGRYTDATSKYE---SVXKT-EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316
Query: 66 ECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE 112
C+ VL+ + ++ AL RA+ + + Y+ A+ D E N + +
Sbjct: 317 VCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQ 363
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFK--KAAEECT 68
IE A +L RDGRY +A Y E++ + + + S C+ D K +A C+
Sbjct: 238 IESAEELIRDGRYTDATSKY-ESVXKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296
Query: 69 SVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE 112
VL+ + ++ AL RA+ + + Y+ A+ D E N + +
Sbjct: 297 EVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQ 340
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 21 GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL 73
G ++AL Y+EA+ K+ L+SNR+A Y K D++KA E+ ++L
Sbjct: 18 GNIDDALQCYSEAI---KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 17 LYRDGRYEEALGFYTEALSVAKI--------KQQKIAL------HSNRAACYLKLHDFKK 62
L+++ + EEA+ Y A++ K Q +AL H N AAC +KL + +
Sbjct: 189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE 248
Query: 63 AAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS 111
A C VL + + AL R + L + +SA D + + P
Sbjct: 249 AIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 7 PANKIERAHQL----YRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKK 62
P N E + L Y+ G Y+EA+ +Y +AL ++ N Y K D+ +
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKAL---ELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 63 AAEECTSVLELDYNHTGA 80
A E LELD N+ A
Sbjct: 62 AIEYYQKALELDPNNAEA 79
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 49 NRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELN 108
N Y K D+ +A E LELD N+ A +Y+ A+ + +EL+
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 109 P-SSEVYQNL 117
P ++E QNL
Sbjct: 74 PNNAEAKQNL 83
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 59 DFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEV 113
DFK + + V E D H L + TLV L + N + ++L++L PS+ V
Sbjct: 37 DFKXCYKLTSVVXEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 23 YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82
Y +A+ YT+ALS+A + SNRAA Y +KAAE+ +D ++ A
Sbjct: 27 YSKAIDLYTQALSIAPANPIYL---SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83
Query: 83 LRAQTLVTLKEYNSALFDVNRLIE 106
+ +Y A + IE
Sbjct: 84 RLGLARFDMADYKGAKEAYEKGIE 107
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix
Length = 70
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 18 YRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD 74
Y+ G Y+EA+ +Y +AL ++ + N Y K D+ +A E LELD
Sbjct: 14 YKQGDYDEAIEYYQKAL---ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 12 ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71
E+ + L++ G Y EA+ Y + ++ + Q +SN+A +KL ++ +A + C L
Sbjct: 9 EQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 21 GRYEEALGFYTEALSVAKIK----QQKIA-LHSNRAACYLKLHDFKKA 63
G+YEE +Y AL + + K +A +N A+CYLK FK+A
Sbjct: 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,761,123
Number of Sequences: 62578
Number of extensions: 223401
Number of successful extensions: 431
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 64
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)