Query 023491
Match_columns 281
No_of_seqs 225 out of 2869
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:26:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0553 TPR repeat-containing 99.8 6.7E-20 1.5E-24 165.5 14.1 120 7-129 81-200 (304)
2 PRK15359 type III secretion sy 99.7 1.4E-15 3.1E-20 125.8 16.3 118 6-126 23-140 (144)
3 PLN03088 SGT1, suppressor of 99.7 1.8E-15 3.9E-20 142.9 17.0 117 8-127 3-119 (356)
4 KOG0548 Molecular co-chaperone 99.7 9.2E-16 2E-20 147.2 13.4 122 1-125 352-473 (539)
5 KOG0543 FKBP-type peptidyl-pro 99.6 2.6E-15 5.7E-20 140.6 14.2 122 7-128 208-341 (397)
6 TIGR02552 LcrH_SycD type III s 99.6 1.8E-14 3.8E-19 116.2 15.6 122 2-126 12-133 (135)
7 KOG4234 TPR repeat-containing 99.6 4.7E-15 1E-19 127.7 12.1 120 7-126 95-216 (271)
8 PRK15363 pathogenicity island 99.6 1.6E-13 3.5E-18 114.7 15.1 119 4-125 32-150 (157)
9 PRK10370 formate-dependent nit 99.5 2.3E-13 5E-18 118.5 16.5 120 2-124 68-190 (198)
10 KOG4648 Uncharacterized conser 99.5 5.3E-14 1.2E-18 129.5 9.1 115 8-125 98-212 (536)
11 PRK11189 lipoprotein NlpI; Pro 99.5 1.1E-12 2.5E-17 120.6 16.9 106 5-113 62-167 (296)
12 KOG0548 Molecular co-chaperone 99.5 2.9E-13 6.2E-18 130.2 11.5 113 7-122 2-114 (539)
13 TIGR02795 tol_pal_ybgF tol-pal 99.5 2.9E-12 6.3E-17 99.9 14.5 113 7-119 2-117 (119)
14 KOG4626 O-linked N-acetylgluco 99.5 2.1E-13 4.6E-18 133.0 9.6 121 3-126 248-368 (966)
15 KOG0547 Translocase of outer m 99.4 8E-13 1.7E-17 126.1 12.2 117 6-126 114-232 (606)
16 TIGR00990 3a0801s09 mitochondr 99.4 6.4E-12 1.4E-16 126.3 17.6 117 4-123 362-478 (615)
17 KOG4626 O-linked N-acetylgluco 99.4 1.4E-12 3E-17 127.4 12.2 117 4-123 351-467 (966)
18 TIGR00990 3a0801s09 mitochondr 99.4 6.1E-12 1.3E-16 126.4 16.8 121 3-126 327-447 (615)
19 PF13414 TPR_11: TPR repeat; P 99.4 4.1E-12 8.8E-17 91.1 8.5 67 43-109 2-69 (69)
20 PRK02603 photosystem I assembl 99.3 4.7E-11 1E-15 101.1 15.1 110 3-112 31-154 (172)
21 PRK12370 invasion protein regu 99.3 4.2E-11 9E-16 119.3 17.2 121 3-126 334-455 (553)
22 KOG1126 DNA-binding cell divis 99.3 1.9E-12 4.1E-17 127.1 6.8 123 3-128 417-539 (638)
23 cd00189 TPR Tetratricopeptide 99.3 3.4E-11 7.4E-16 86.7 11.7 99 9-110 2-100 (100)
24 KOG0550 Molecular chaperone (D 99.3 7E-12 1.5E-16 117.8 9.6 122 4-126 246-368 (486)
25 PRK11189 lipoprotein NlpI; Pro 99.3 1.2E-10 2.5E-15 107.4 17.1 119 3-124 94-283 (296)
26 KOG0545 Aryl-hydrocarbon recep 99.3 3E-11 6.5E-16 107.1 12.5 119 6-124 177-311 (329)
27 TIGR02521 type_IV_pilW type IV 99.3 1.9E-10 4.1E-15 97.9 17.0 118 4-124 62-181 (234)
28 PRK12370 invasion protein regu 99.3 6.6E-11 1.4E-15 117.9 16.2 115 3-120 291-414 (553)
29 KOG0624 dsRNA-activated protei 99.3 1.7E-11 3.6E-16 113.2 10.6 114 2-118 33-146 (504)
30 PRK09782 bacteriophage N4 rece 99.3 8.7E-11 1.9E-15 123.6 16.7 116 3-122 606-721 (987)
31 TIGR02521 type_IV_pilW type IV 99.3 3.3E-10 7.3E-15 96.4 17.2 122 3-125 95-216 (234)
32 KOG0551 Hsp90 co-chaperone CNS 99.3 2.2E-11 4.8E-16 111.7 10.3 113 6-118 80-193 (390)
33 TIGR03302 OM_YfiO outer membra 99.3 1.4E-10 2.9E-15 102.2 15.1 118 4-121 30-158 (235)
34 PF13414 TPR_11: TPR repeat; P 99.3 3.6E-11 7.9E-16 86.1 8.9 67 6-75 2-69 (69)
35 PRK15179 Vi polysaccharide bio 99.3 1.4E-10 3E-15 118.1 16.2 120 4-126 83-202 (694)
36 PRK15331 chaperone protein Sic 99.2 1.3E-10 2.8E-15 97.8 12.8 120 6-129 36-155 (165)
37 PF12895 Apc3: Anaphase-promot 99.2 3.7E-11 8E-16 89.9 8.5 83 20-104 2-84 (84)
38 KOG4642 Chaperone-dependent E3 99.2 4E-11 8.6E-16 105.9 9.2 99 6-107 9-107 (284)
39 CHL00033 ycf3 photosystem I as 99.2 5.1E-10 1.1E-14 94.2 15.4 107 6-112 34-154 (168)
40 PF13512 TPR_18: Tetratricopep 99.2 3.2E-10 7E-15 93.4 13.7 115 5-119 8-140 (142)
41 PRK10803 tol-pal system protei 99.2 6.8E-10 1.5E-14 100.9 16.9 117 6-122 141-261 (263)
42 PRK15359 type III secretion sy 99.2 1.6E-10 3.6E-15 95.5 11.6 96 27-128 13-108 (144)
43 PRK09782 bacteriophage N4 rece 99.2 4.6E-10 9.9E-15 118.2 17.7 119 4-126 573-691 (987)
44 PRK15174 Vi polysaccharide exp 99.2 7.1E-10 1.5E-14 112.7 17.2 107 4-113 243-353 (656)
45 PF13432 TPR_16: Tetratricopep 99.2 1E-10 2.2E-15 83.0 7.8 65 48-112 1-65 (65)
46 PLN02789 farnesyltranstransfer 99.2 8.3E-10 1.8E-14 103.0 15.8 120 3-125 67-189 (320)
47 KOG0376 Serine-threonine phosp 99.2 3.5E-11 7.5E-16 115.1 6.6 119 6-127 3-121 (476)
48 PRK10370 formate-dependent nit 99.2 8.6E-10 1.9E-14 96.1 14.3 105 20-127 52-159 (198)
49 PF13429 TPR_15: Tetratricopep 99.1 3.9E-10 8.4E-15 102.3 11.0 124 4-130 143-266 (280)
50 COG5010 TadD Flp pilus assembl 99.1 1.7E-09 3.6E-14 96.6 14.7 126 2-130 95-220 (257)
51 KOG1125 TPR repeat-containing 99.1 2.8E-10 6.2E-15 110.6 10.1 103 5-110 428-530 (579)
52 KOG1155 Anaphase-promoting com 99.1 1.8E-09 3.8E-14 103.0 14.8 125 3-130 360-484 (559)
53 KOG1126 DNA-binding cell divis 99.1 6.7E-10 1.5E-14 109.4 12.1 122 4-128 486-607 (638)
54 TIGR03302 OM_YfiO outer membra 99.1 3.2E-09 7E-14 93.5 15.3 122 7-128 70-219 (235)
55 TIGR02552 LcrH_SycD type III s 99.1 1.4E-09 2.9E-14 87.5 11.9 97 28-127 4-100 (135)
56 COG4235 Cytochrome c biogenesi 99.1 3E-09 6.6E-14 96.9 15.2 120 2-124 151-273 (287)
57 PRK10049 pgaA outer membrane p 99.1 3.4E-09 7.4E-14 109.4 17.7 118 3-124 45-162 (765)
58 COG3063 PilF Tfp pilus assembl 99.1 2.6E-09 5.7E-14 94.0 14.0 115 7-124 35-151 (250)
59 PRK15174 Vi polysaccharide exp 99.1 2.9E-09 6.4E-14 108.2 16.7 114 2-118 71-184 (656)
60 COG3063 PilF Tfp pilus assembl 99.1 2E-09 4.4E-14 94.7 13.3 119 3-124 65-185 (250)
61 PRK11447 cellulose synthase su 99.1 2.8E-09 6.1E-14 114.6 17.0 117 3-122 299-429 (1157)
62 TIGR02917 PEP_TPR_lipo putativ 99.1 3.7E-09 8.1E-14 107.1 16.9 120 3-126 766-885 (899)
63 COG1729 Uncharacterized protei 99.1 2.9E-09 6.3E-14 95.9 14.1 117 6-122 140-259 (262)
64 KOG1155 Anaphase-promoting com 99.1 1.5E-09 3.2E-14 103.5 12.4 113 13-128 336-448 (559)
65 TIGR02917 PEP_TPR_lipo putativ 99.1 4.1E-09 9E-14 106.7 16.5 118 4-124 122-239 (899)
66 KOG1173 Anaphase-promoting com 99.0 1.8E-09 3.9E-14 104.9 12.1 122 3-124 410-535 (611)
67 PF13525 YfiO: Outer membrane 99.0 6.1E-09 1.3E-13 90.8 13.9 122 5-126 3-141 (203)
68 PRK15179 Vi polysaccharide bio 99.0 7.7E-09 1.7E-13 105.4 16.5 119 3-124 116-235 (694)
69 PLN02789 farnesyltranstransfer 99.0 6.5E-09 1.4E-13 97.0 14.7 120 2-124 101-229 (320)
70 PRK11447 cellulose synthase su 99.0 1E-08 2.2E-13 110.3 17.7 116 3-121 381-538 (1157)
71 PF13371 TPR_9: Tetratricopept 99.0 2.9E-09 6.2E-14 76.9 8.8 71 51-121 2-72 (73)
72 PF13432 TPR_16: Tetratricopep 99.0 2.8E-09 6.1E-14 75.5 8.3 65 11-78 1-65 (65)
73 KOG0547 Translocase of outer m 99.0 3.1E-09 6.7E-14 101.9 10.8 105 3-110 390-494 (606)
74 PRK11788 tetratricopeptide rep 99.0 2.1E-08 4.5E-13 94.2 16.5 105 4-111 138-247 (389)
75 PRK10866 outer membrane biogen 99.0 2.5E-08 5.5E-13 89.6 15.3 122 5-126 30-175 (243)
76 KOG2002 TPR-containing nuclear 99.0 8.2E-09 1.8E-13 105.3 13.1 124 3-126 266-390 (1018)
77 PRK11788 tetratricopeptide rep 98.9 2.9E-08 6.4E-13 93.2 15.9 115 8-125 108-227 (389)
78 PF09976 TPR_21: Tetratricopep 98.9 9.9E-09 2.2E-13 84.5 10.6 98 7-105 48-145 (145)
79 PRK10049 pgaA outer membrane p 98.9 3.3E-08 7.1E-13 102.2 16.4 112 7-121 359-470 (765)
80 PF14559 TPR_19: Tetratricopep 98.9 4.7E-09 1E-13 74.8 7.0 67 55-121 2-68 (68)
81 PLN03088 SGT1, suppressor of 98.9 2E-08 4.3E-13 95.0 12.4 87 3-92 32-118 (356)
82 PF12688 TPR_5: Tetratrico pep 98.9 4.9E-08 1.1E-12 78.6 12.7 99 8-106 2-103 (120)
83 KOG2003 TPR repeat-containing 98.9 8.1E-09 1.8E-13 98.5 9.3 117 5-124 488-604 (840)
84 PRK15363 pathogenicity island 98.9 2.9E-08 6.3E-13 83.2 11.4 88 41-128 32-119 (157)
85 KOG1308 Hsp70-interacting prot 98.9 1.2E-09 2.6E-14 100.9 3.3 110 8-121 115-224 (377)
86 COG5010 TadD Flp pilus assembl 98.8 6.8E-08 1.5E-12 86.4 13.0 120 2-125 62-181 (257)
87 KOG4162 Predicted calmodulin-b 98.8 3.6E-08 7.8E-13 98.7 11.9 107 4-113 681-789 (799)
88 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 2.2E-08 4.7E-13 96.2 10.0 69 2-73 70-141 (453)
89 KOG2076 RNA polymerase III tra 98.8 1.4E-07 3.1E-12 95.8 16.0 116 7-125 139-254 (895)
90 KOG0550 Molecular chaperone (D 98.8 1.4E-08 3E-13 95.8 8.2 124 3-126 199-335 (486)
91 PF14559 TPR_19: Tetratricopep 98.8 2E-08 4.3E-13 71.4 7.2 68 17-87 1-68 (68)
92 PRK14574 hmsH outer membrane p 98.8 1.7E-07 3.7E-12 97.3 15.7 113 3-118 30-142 (822)
93 KOG4555 TPR repeat-containing 98.8 2.3E-07 4.9E-12 75.6 13.0 99 9-110 45-147 (175)
94 PF13424 TPR_12: Tetratricopep 98.8 2E-08 4.4E-13 73.5 6.5 67 41-107 2-75 (78)
95 COG4783 Putative Zn-dependent 98.8 2.5E-07 5.3E-12 89.0 15.3 121 5-128 304-424 (484)
96 CHL00033 ycf3 photosystem I as 98.8 8.5E-08 1.8E-12 80.7 11.0 112 14-126 6-120 (168)
97 PF13371 TPR_9: Tetratricopept 98.8 6E-08 1.3E-12 69.9 8.8 70 14-86 2-71 (73)
98 cd00189 TPR Tetratricopeptide 98.8 1.2E-07 2.5E-12 67.9 10.2 81 46-126 2-82 (100)
99 KOG1129 TPR repeat-containing 98.8 1.2E-08 2.5E-13 94.2 5.9 119 4-125 321-442 (478)
100 KOG3060 Uncharacterized conser 98.8 3.2E-07 7E-12 82.0 14.8 120 4-126 83-202 (289)
101 COG4783 Putative Zn-dependent 98.7 4.1E-07 8.8E-12 87.5 16.0 123 2-127 335-457 (484)
102 PF06552 TOM20_plant: Plant sp 98.7 1.5E-07 3.2E-12 80.3 11.2 99 23-124 7-126 (186)
103 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 2.1E-07 4.4E-12 89.6 13.2 69 39-107 70-141 (453)
104 cd05804 StaR_like StaR_like; a 98.7 2.4E-07 5.2E-12 86.1 13.3 104 3-109 110-217 (355)
105 KOG1125 TPR repeat-containing 98.7 1.1E-07 2.4E-12 92.8 10.6 120 3-122 349-508 (579)
106 PRK02603 photosystem I assembl 98.7 2.4E-07 5.2E-12 78.4 11.4 89 40-128 31-122 (172)
107 KOG1128 Uncharacterized conser 98.7 5.1E-08 1.1E-12 97.2 7.9 118 6-126 484-601 (777)
108 TIGR02795 tol_pal_ybgF tol-pal 98.7 4.3E-07 9.3E-12 70.4 11.5 82 44-125 2-89 (119)
109 PF13429 TPR_15: Tetratricopep 98.7 1.7E-07 3.7E-12 85.0 10.4 121 6-127 109-229 (280)
110 KOG2002 TPR-containing nuclear 98.6 1.3E-07 2.8E-12 96.7 10.1 121 3-126 642-764 (1018)
111 PF13424 TPR_12: Tetratricopep 98.6 8.6E-08 1.9E-12 70.2 6.5 71 4-74 2-76 (78)
112 PRK14720 transcript cleavage f 98.6 4.8E-07 1E-11 93.9 13.8 118 3-125 27-163 (906)
113 COG4785 NlpI Lipoprotein NlpI, 98.6 2E-07 4.4E-12 81.8 9.2 118 6-126 64-181 (297)
114 KOG0624 dsRNA-activated protei 98.6 1.1E-06 2.4E-11 81.7 14.2 113 8-123 156-268 (504)
115 KOG2076 RNA polymerase III tra 98.6 1.6E-06 3.5E-11 88.3 15.8 105 2-109 168-272 (895)
116 PF13525 YfiO: Outer membrane 98.6 2.2E-06 4.8E-11 74.7 14.3 122 3-124 38-187 (203)
117 PRK14574 hmsH outer membrane p 98.5 2.1E-06 4.5E-11 89.3 15.9 121 4-128 99-219 (822)
118 KOG0553 TPR repeat-containing 98.5 5.6E-07 1.2E-11 82.1 10.2 101 3-106 111-214 (304)
119 PRK10153 DNA-binding transcrip 98.5 1.6E-06 3.4E-11 86.0 13.9 110 3-114 372-489 (517)
120 PRK11906 transcriptional regul 98.5 2.3E-06 5E-11 82.5 14.4 111 3-116 291-410 (458)
121 PF09976 TPR_21: Tetratricopep 98.5 6E-06 1.3E-10 67.9 14.6 119 7-126 11-132 (145)
122 KOG1156 N-terminal acetyltrans 98.5 1.2E-06 2.7E-11 86.6 11.6 115 9-126 9-123 (700)
123 cd05804 StaR_like StaR_like; a 98.5 3.9E-06 8.4E-11 77.9 14.0 106 6-111 42-181 (355)
124 KOG3060 Uncharacterized conser 98.4 6.4E-06 1.4E-10 73.8 13.8 121 3-126 116-239 (289)
125 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 3E-06 6.5E-11 81.2 12.2 91 9-102 202-292 (395)
126 KOG1840 Kinesin light chain [C 98.4 3.6E-06 7.9E-11 82.9 12.8 122 7-128 241-383 (508)
127 COG4105 ComL DNA uptake lipopr 98.4 1.1E-05 2.4E-10 72.4 14.7 120 6-125 33-166 (254)
128 KOG1129 TPR repeat-containing 98.4 1.1E-06 2.4E-11 81.3 8.4 114 5-118 356-469 (478)
129 PRK11906 transcriptional regul 98.4 6.9E-06 1.5E-10 79.3 13.6 117 9-125 257-385 (458)
130 TIGR00540 hemY_coli hemY prote 98.4 8.7E-06 1.9E-10 78.2 14.4 119 5-127 261-385 (409)
131 KOG4162 Predicted calmodulin-b 98.4 6.3E-06 1.4E-10 83.0 13.6 118 9-129 652-771 (799)
132 KOG1310 WD40 repeat protein [G 98.4 9.9E-07 2.1E-11 85.7 7.3 116 4-122 371-489 (758)
133 KOG1840 Kinesin light chain [C 98.3 3.7E-06 8E-11 82.8 11.4 107 2-108 278-397 (508)
134 KOG1174 Anaphase-promoting com 98.3 1.2E-05 2.6E-10 76.4 14.3 121 3-126 330-519 (564)
135 TIGR00540 hemY_coli hemY prote 98.3 2.3E-05 5.1E-10 75.2 16.8 107 12-121 89-196 (409)
136 PRK10866 outer membrane biogen 98.3 2E-05 4.4E-10 70.8 15.1 120 6-125 68-222 (243)
137 KOG0495 HAT repeat protein [RN 98.3 7.3E-06 1.6E-10 81.5 12.6 121 2-126 613-733 (913)
138 COG2956 Predicted N-acetylgluc 98.3 1E-05 2.3E-10 74.7 12.7 121 6-126 140-263 (389)
139 KOG0543 FKBP-type peptidyl-pro 98.3 5.5E-06 1.2E-10 78.4 11.2 96 8-106 258-354 (397)
140 PRK10153 DNA-binding transcrip 98.3 1.8E-05 3.9E-10 78.6 14.9 119 6-128 338-469 (517)
141 PRK10747 putative protoheme IX 98.3 2.3E-05 5.1E-10 75.1 14.7 117 4-127 260-376 (398)
142 COG4235 Cytochrome c biogenesi 98.3 2.1E-05 4.5E-10 72.0 13.3 101 22-125 137-240 (287)
143 PF12895 Apc3: Anaphase-promot 98.2 2.3E-06 4.9E-11 63.7 5.7 61 6-70 24-84 (84)
144 PRK10747 putative protoheme IX 98.2 5.6E-05 1.2E-09 72.5 16.6 109 10-122 87-197 (398)
145 KOG1128 Uncharacterized conser 98.2 4.7E-06 1E-10 83.5 9.1 121 3-126 515-635 (777)
146 KOG1173 Anaphase-promoting com 98.2 1E-05 2.3E-10 79.1 10.9 118 3-123 308-425 (611)
147 COG2956 Predicted N-acetylgluc 98.2 3.7E-05 8.1E-10 71.1 13.5 111 7-120 180-291 (389)
148 PRK14720 transcript cleavage f 98.2 1.7E-05 3.7E-10 82.6 12.0 105 3-110 61-181 (906)
149 COG4700 Uncharacterized protei 98.1 7.8E-05 1.7E-09 64.4 13.3 118 6-126 88-207 (251)
150 PF00515 TPR_1: Tetratricopept 98.1 6E-06 1.3E-10 50.8 4.7 32 79-110 2-33 (34)
151 PRK10803 tol-pal system protei 98.1 3.9E-05 8.4E-10 69.9 11.8 75 6-80 179-253 (263)
152 PF14938 SNAP: Soluble NSF att 98.1 6.1E-05 1.3E-09 68.9 13.0 105 7-111 114-229 (282)
153 KOG1156 N-terminal acetyltrans 98.1 2.5E-05 5.5E-10 77.5 11.0 121 3-126 37-157 (700)
154 PF12688 TPR_5: Tetratrico pep 98.1 5.9E-05 1.3E-09 60.7 11.1 82 45-126 2-89 (120)
155 PF04733 Coatomer_E: Coatomer 98.1 5.4E-05 1.2E-09 69.9 12.3 120 6-128 130-251 (290)
156 KOG1174 Anaphase-promoting com 98.1 3.1E-05 6.8E-10 73.7 10.5 112 5-119 298-409 (564)
157 PF07719 TPR_2: Tetratricopept 98.1 1.3E-05 2.7E-10 49.0 5.3 33 79-111 2-34 (34)
158 KOG3785 Uncharacterized conser 98.0 5E-05 1.1E-09 71.2 11.4 109 13-124 63-197 (557)
159 PF13428 TPR_14: Tetratricopep 98.0 1.3E-05 2.8E-10 52.6 5.4 39 80-118 3-41 (44)
160 PF13428 TPR_14: Tetratricopep 98.0 1.4E-05 3.1E-10 52.4 5.3 42 45-86 2-43 (44)
161 PF03704 BTAD: Bacterial trans 98.0 0.00018 3.9E-09 58.8 13.2 99 9-107 8-125 (146)
162 PF00515 TPR_1: Tetratricopept 98.0 1.2E-05 2.7E-10 49.4 4.5 34 44-77 1-34 (34)
163 PF14938 SNAP: Soluble NSF att 98.0 2.3E-05 5E-10 71.7 8.3 102 7-108 74-185 (282)
164 PF13431 TPR_17: Tetratricopep 98.0 7.6E-06 1.6E-10 51.1 3.3 32 67-98 2-33 (34)
165 PRK15331 chaperone protein Sic 98.0 5.6E-05 1.2E-09 63.9 9.3 88 40-127 33-120 (165)
166 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 5.4E-05 1.2E-09 52.1 7.3 49 79-127 2-50 (53)
167 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0003 6.6E-09 67.6 14.7 105 18-128 180-284 (395)
168 PF04733 Coatomer_E: Coatomer 97.9 0.00013 2.8E-09 67.4 11.3 106 12-120 170-278 (290)
169 PF07719 TPR_2: Tetratricopept 97.9 4.3E-05 9.3E-10 46.6 5.2 34 44-77 1-34 (34)
170 KOG4648 Uncharacterized conser 97.8 1.5E-05 3.4E-10 74.2 4.3 73 47-119 100-172 (536)
171 KOG2003 TPR repeat-containing 97.8 0.0017 3.7E-08 62.7 17.9 122 6-130 557-712 (840)
172 COG2976 Uncharacterized protei 97.8 0.0004 8.8E-09 60.2 12.4 105 8-114 90-195 (207)
173 PF13512 TPR_18: Tetratricopep 97.8 0.00015 3.3E-09 59.9 9.4 78 3-80 43-135 (142)
174 KOG0546 HSP90 co-chaperone CPR 97.8 2.2E-05 4.7E-10 73.3 4.5 121 8-128 223-359 (372)
175 KOG4234 TPR repeat-containing 97.8 0.00031 6.8E-09 61.3 11.2 77 49-125 100-181 (271)
176 KOG1127 TPR repeat-containing 97.8 8.2E-05 1.8E-09 77.0 8.8 80 47-126 565-644 (1238)
177 KOG1130 Predicted G-alpha GTPa 97.8 0.0002 4.3E-09 68.4 10.7 121 8-128 236-371 (639)
178 KOG1127 TPR repeat-containing 97.8 8.6E-05 1.9E-09 76.9 8.4 110 9-121 564-673 (1238)
179 KOG0495 HAT repeat protein [RN 97.7 0.00042 9.2E-09 69.3 12.6 114 6-122 650-763 (913)
180 PF06552 TOM20_plant: Plant sp 97.7 0.00018 4E-09 61.6 8.8 74 2-78 20-114 (186)
181 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0018 4E-08 52.2 14.5 99 9-110 97-199 (291)
182 KOG2376 Signal recognition par 97.7 0.00056 1.2E-08 67.6 13.1 109 11-125 83-230 (652)
183 KOG2376 Signal recognition par 97.7 0.00042 9.2E-09 68.4 11.9 111 4-121 43-155 (652)
184 COG4785 NlpI Lipoprotein NlpI, 97.7 0.00041 8.8E-09 61.4 10.4 103 3-108 95-267 (297)
185 KOG1130 Predicted G-alpha GTPa 97.7 3.9E-05 8.4E-10 73.1 4.3 99 10-108 198-305 (639)
186 COG4105 ComL DNA uptake lipopr 97.7 0.0026 5.7E-08 57.3 15.5 125 3-127 67-216 (254)
187 KOG4555 TPR repeat-containing 97.7 0.00057 1.2E-08 56.0 10.1 78 50-127 49-130 (175)
188 KOG3785 Uncharacterized conser 97.7 0.00032 6.9E-09 65.9 9.8 105 15-126 30-135 (557)
189 PRK10941 hypothetical protein; 97.6 0.00081 1.8E-08 61.4 12.2 82 44-125 181-262 (269)
190 PF12968 DUF3856: Domain of Un 97.6 0.00089 1.9E-08 53.8 10.8 97 11-107 13-129 (144)
191 KOG4340 Uncharacterized conser 97.6 0.00018 3.9E-09 66.2 7.5 95 4-101 141-264 (459)
192 COG0457 NrfG FOG: TPR repeat [ 97.6 0.0052 1.1E-07 49.5 15.3 103 16-121 139-245 (291)
193 KOG3364 Membrane protein invol 97.6 0.0013 2.8E-08 53.9 11.3 88 41-128 29-121 (149)
194 PF13181 TPR_8: Tetratricopept 97.6 0.00016 3.5E-09 44.1 4.4 32 79-110 2-33 (34)
195 PF12569 NARP1: NMDA receptor- 97.5 0.0022 4.8E-08 63.7 14.4 104 7-113 4-112 (517)
196 PF13431 TPR_17: Tetratricopep 97.5 9.6E-05 2.1E-09 46.0 3.1 34 29-65 1-34 (34)
197 KOG4340 Uncharacterized conser 97.5 0.00086 1.9E-08 61.9 9.8 118 2-122 39-188 (459)
198 KOG4642 Chaperone-dependent E3 97.5 0.00019 4E-09 64.1 5.3 75 49-123 15-89 (284)
199 PF12569 NARP1: NMDA receptor- 97.4 0.002 4.4E-08 64.0 12.8 97 8-107 195-291 (517)
200 COG1729 Uncharacterized protei 97.4 0.0015 3.3E-08 59.1 10.8 81 3-83 174-254 (262)
201 KOG2471 TPR repeat-containing 97.4 0.0004 8.7E-09 67.5 7.1 120 5-124 238-381 (696)
202 PF13181 TPR_8: Tetratricopept 97.3 0.00047 1E-08 42.0 4.6 33 45-77 2-34 (34)
203 PF10300 DUF3808: Protein of u 97.3 0.0023 4.9E-08 62.9 11.6 105 4-108 264-377 (468)
204 KOG2796 Uncharacterized conser 97.3 0.0037 8.1E-08 56.8 11.7 109 3-111 208-319 (366)
205 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0012 2.6E-08 61.5 8.7 79 43-121 80-162 (390)
206 KOG4151 Myosin assembly protei 97.2 0.0014 3E-08 66.8 8.6 122 8-129 54-178 (748)
207 KOG3824 Huntingtin interacting 97.2 0.0012 2.7E-08 61.0 7.4 78 43-120 115-192 (472)
208 PF05843 Suf: Suppressor of fo 97.1 0.0066 1.4E-07 55.6 12.0 101 9-112 3-104 (280)
209 PF15015 NYD-SP12_N: Spermatog 97.1 0.0026 5.7E-08 60.9 9.3 97 10-106 179-290 (569)
210 KOG4507 Uncharacterized conser 97.1 0.0023 5E-08 63.5 9.1 104 18-124 618-722 (886)
211 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0026 5.6E-08 43.8 6.6 43 46-88 3-45 (53)
212 COG3071 HemY Uncharacterized e 97.1 0.024 5.2E-07 53.9 15.2 115 8-125 85-200 (400)
213 KOG2796 Uncharacterized conser 97.1 0.0064 1.4E-07 55.3 10.9 114 10-126 180-300 (366)
214 PF13174 TPR_6: Tetratricopept 97.1 0.0011 2.4E-08 39.7 4.2 31 80-110 2-32 (33)
215 PF13176 TPR_7: Tetratricopept 97.0 0.0018 3.8E-08 40.6 4.5 28 80-107 1-28 (36)
216 PLN03081 pentatricopeptide (PP 96.9 0.008 1.7E-07 61.6 11.7 94 9-107 464-557 (697)
217 PRK04841 transcriptional regul 96.9 0.01 2.3E-07 62.1 12.7 100 9-108 493-603 (903)
218 PF13174 TPR_6: Tetratricopept 96.9 0.0019 4.1E-08 38.7 4.2 32 46-77 2-33 (33)
219 PRK04841 transcriptional regul 96.9 0.016 3.4E-07 60.8 13.8 102 8-109 532-643 (903)
220 PF04781 DUF627: Protein of un 96.9 0.008 1.7E-07 47.6 8.6 95 13-107 2-107 (111)
221 smart00028 TPR Tetratricopepti 96.9 0.0016 3.6E-08 37.1 3.6 30 80-109 3-32 (34)
222 COG3118 Thioredoxin domain-con 96.8 0.037 8.1E-07 51.0 13.5 115 8-125 135-285 (304)
223 PF09986 DUF2225: Uncharacteri 96.8 0.026 5.6E-07 49.9 12.0 90 20-109 90-196 (214)
224 smart00028 TPR Tetratricopepti 96.8 0.0024 5.1E-08 36.4 3.7 32 45-76 2-33 (34)
225 PLN03218 maturation of RBCL 1; 96.7 0.056 1.2E-06 58.3 16.4 89 15-105 657-746 (1060)
226 KOG1586 Protein required for f 96.7 0.017 3.7E-07 51.7 10.3 106 10-115 116-232 (288)
227 KOG3081 Vesicle coat complex C 96.7 0.051 1.1E-06 49.5 13.4 120 9-128 110-257 (299)
228 COG3071 HemY Uncharacterized e 96.7 0.017 3.6E-07 55.0 10.7 115 6-127 262-376 (400)
229 PLN03218 maturation of RBCL 1; 96.7 0.061 1.3E-06 58.0 16.3 61 46-106 581-642 (1060)
230 KOG0376 Serine-threonine phosp 96.7 0.0013 2.9E-08 63.7 3.4 83 3-88 34-116 (476)
231 KOG2053 Mitochondrial inherita 96.6 0.021 4.6E-07 59.1 11.8 89 19-110 21-109 (932)
232 KOG4814 Uncharacterized conser 96.6 0.017 3.7E-07 58.0 10.8 98 10-107 357-457 (872)
233 KOG1915 Cell cycle control pro 96.6 0.017 3.7E-07 56.3 10.0 106 4-112 70-175 (677)
234 PF13176 TPR_7: Tetratricopept 96.5 0.0057 1.2E-07 38.2 4.6 28 46-73 1-28 (36)
235 PF10300 DUF3808: Protein of u 96.5 0.025 5.5E-07 55.6 11.4 99 20-121 246-348 (468)
236 KOG2053 Mitochondrial inherita 96.5 0.056 1.2E-06 56.0 13.8 110 3-116 39-148 (932)
237 PF03704 BTAD: Bacterial trans 96.5 0.027 5.9E-07 45.8 9.7 62 8-72 63-124 (146)
238 PLN03077 Protein ECB2; Provisi 96.5 0.11 2.3E-06 54.6 16.4 94 8-106 626-719 (857)
239 PLN03081 pentatricopeptide (PP 96.4 0.036 7.7E-07 56.9 12.0 99 6-106 289-419 (697)
240 KOG1941 Acetylcholine receptor 96.4 0.012 2.6E-07 55.7 7.6 100 8-107 123-235 (518)
241 KOG1941 Acetylcholine receptor 96.4 0.016 3.5E-07 54.9 8.4 101 8-108 163-276 (518)
242 PRK10941 hypothetical protein; 96.4 0.052 1.1E-06 49.7 11.5 76 10-88 184-259 (269)
243 COG2912 Uncharacterized conser 96.4 0.029 6.3E-07 51.1 9.7 81 44-124 181-261 (269)
244 KOG1586 Protein required for f 96.3 0.062 1.3E-06 48.2 11.2 108 6-113 72-189 (288)
245 PF09613 HrpB1_HrpK: Bacterial 96.3 0.41 8.9E-06 40.4 15.4 113 7-124 10-122 (160)
246 KOG1308 Hsp70-interacting prot 96.2 0.00095 2.1E-08 62.3 -0.5 75 52-126 122-196 (377)
247 PF05843 Suf: Suppressor of fo 96.2 0.13 2.9E-06 47.0 13.5 114 5-121 33-150 (280)
248 PF10602 RPN7: 26S proteasome 96.2 0.055 1.2E-06 46.3 10.2 99 8-106 37-141 (177)
249 PLN03077 Protein ECB2; Provisi 96.2 0.11 2.3E-06 54.6 14.1 111 6-119 553-665 (857)
250 COG4700 Uncharacterized protei 96.1 0.12 2.5E-06 45.1 11.6 98 5-104 122-219 (251)
251 COG4976 Predicted methyltransf 96.1 0.0081 1.8E-07 53.6 4.7 61 54-114 5-65 (287)
252 KOG1585 Protein required for f 96.1 0.04 8.6E-07 49.7 8.8 106 3-108 106-220 (308)
253 PF04184 ST7: ST7 protein; In 96.1 0.078 1.7E-06 52.1 11.5 105 9-116 261-384 (539)
254 KOG2396 HAT (Half-A-TPR) repea 96.0 0.11 2.3E-06 51.1 12.0 91 25-118 89-180 (568)
255 PF02259 FAT: FAT domain; Int 96.0 0.27 5.9E-06 45.2 14.5 122 6-127 145-307 (352)
256 KOG4507 Uncharacterized conser 96.0 0.021 4.5E-07 57.0 7.1 99 13-112 218-317 (886)
257 KOG3081 Vesicle coat complex C 95.9 0.24 5.1E-06 45.3 12.9 105 9-116 171-280 (299)
258 PF14561 TPR_20: Tetratricopep 95.8 0.06 1.3E-06 41.0 7.6 46 65-110 9-54 (90)
259 PF02259 FAT: FAT domain; Int 95.7 0.2 4.4E-06 46.1 12.6 105 6-110 183-341 (352)
260 KOG2471 TPR repeat-containing 95.7 0.017 3.7E-07 56.5 5.2 82 10-91 286-382 (696)
261 PF04184 ST7: ST7 protein; In 95.6 0.23 5.1E-06 48.8 12.6 78 44-121 259-339 (539)
262 PF13374 TPR_10: Tetratricopep 95.5 0.035 7.5E-07 34.7 4.7 29 45-73 3-31 (42)
263 PF10579 Rapsyn_N: Rapsyn N-te 95.5 0.093 2E-06 39.0 7.4 61 8-68 7-67 (80)
264 KOG1915 Cell cycle control pro 95.5 0.19 4.1E-06 49.3 11.4 107 19-126 378-485 (677)
265 KOG3824 Huntingtin interacting 95.4 0.05 1.1E-06 50.7 7.1 74 11-87 120-193 (472)
266 KOG0545 Aryl-hydrocarbon recep 95.4 0.061 1.3E-06 48.6 7.3 71 7-80 230-300 (329)
267 PF09613 HrpB1_HrpK: Bacterial 95.3 0.31 6.6E-06 41.2 11.0 82 45-126 11-92 (160)
268 PF13374 TPR_10: Tetratricopep 95.3 0.047 1E-06 34.1 4.8 30 78-107 2-31 (42)
269 PF12862 Apc5: Anaphase-promot 95.3 0.14 3E-06 38.9 8.2 28 80-107 43-70 (94)
270 PF14561 TPR_20: Tetratricopep 95.3 0.22 4.7E-06 37.9 9.2 48 27-77 8-55 (90)
271 KOG3364 Membrane protein invol 95.2 0.17 3.7E-06 41.7 8.8 83 6-90 31-117 (149)
272 PF12862 Apc5: Anaphase-promot 95.2 0.12 2.6E-06 39.3 7.6 60 13-72 4-69 (94)
273 KOG2610 Uncharacterized conser 95.0 0.31 6.8E-06 46.0 10.9 109 13-124 109-221 (491)
274 PRK13184 pknD serine/threonine 94.9 0.21 4.6E-06 53.1 10.9 112 13-125 481-599 (932)
275 COG3914 Spy Predicted O-linked 94.9 0.54 1.2E-05 47.1 12.9 110 4-116 62-180 (620)
276 KOG2610 Uncharacterized conser 94.9 0.2 4.3E-06 47.3 9.3 95 9-103 139-234 (491)
277 COG0790 FOG: TPR repeat, SEL1 94.8 1.2 2.6E-05 40.3 14.5 110 3-119 105-230 (292)
278 COG4976 Predicted methyltransf 94.6 0.066 1.4E-06 47.9 5.4 61 15-78 3-63 (287)
279 PF08631 SPO22: Meiosis protei 94.5 1.7 3.8E-05 39.5 14.8 120 7-126 35-170 (278)
280 KOG1070 rRNA processing protei 94.5 0.55 1.2E-05 51.3 12.6 104 11-117 1534-1639(1710)
281 PF13281 DUF4071: Domain of un 94.4 1.9 4.1E-05 41.3 15.0 113 5-119 177-346 (374)
282 PF04910 Tcf25: Transcriptiona 94.3 0.23 5.1E-06 47.2 8.8 106 2-107 35-168 (360)
283 PF09986 DUF2225: Uncharacteri 94.3 0.21 4.6E-06 44.1 7.9 69 18-86 136-208 (214)
284 KOG1070 rRNA processing protei 94.2 1 2.3E-05 49.2 13.8 114 6-120 1563-1676(1710)
285 PF07079 DUF1347: Protein of u 94.0 0.36 7.8E-06 47.1 9.2 73 50-126 468-544 (549)
286 KOG1585 Protein required for f 94.0 1.9 4.2E-05 39.1 13.2 118 6-123 29-158 (308)
287 COG3947 Response regulator con 93.9 0.35 7.6E-06 44.7 8.6 61 45-105 280-340 (361)
288 COG2912 Uncharacterized conser 93.9 0.44 9.4E-06 43.5 9.1 74 12-88 186-259 (269)
289 TIGR02561 HrpB1_HrpK type III 93.7 0.95 2E-05 37.8 10.1 110 7-121 10-119 (153)
290 PF13281 DUF4071: Domain of un 93.4 1.1 2.4E-05 42.9 11.4 106 6-111 140-259 (374)
291 KOG2300 Uncharacterized conser 93.3 1.6 3.4E-05 43.1 12.4 100 6-108 366-475 (629)
292 PF10516 SHNi-TPR: SHNi-TPR; 93.2 0.15 3.3E-06 32.5 3.7 29 79-107 2-30 (38)
293 PF10579 Rapsyn_N: Rapsyn N-te 93.0 0.98 2.1E-05 33.7 8.1 61 47-107 9-72 (80)
294 PF10373 EST1_DNA_bind: Est1 D 93.0 0.37 8E-06 43.0 7.3 62 63-124 1-62 (278)
295 PF04781 DUF627: Protein of un 92.9 0.65 1.4E-05 36.8 7.5 70 50-119 2-85 (111)
296 KOG2581 26S proteasome regulat 92.8 1.4 3E-05 42.5 11.0 103 10-112 172-281 (493)
297 KOG1550 Extracellular protein 92.6 1.8 3.9E-05 43.5 12.4 105 9-122 290-406 (552)
298 KOG1550 Extracellular protein 92.5 2.1 4.5E-05 43.1 12.6 116 6-125 243-373 (552)
299 PF08631 SPO22: Meiosis protei 92.5 3.2 7E-05 37.7 12.9 99 17-115 3-124 (278)
300 PF07720 TPR_3: Tetratricopept 92.5 0.49 1.1E-05 29.7 5.2 32 79-110 2-35 (36)
301 COG3898 Uncharacterized membra 92.4 2.5 5.5E-05 40.8 12.1 96 7-106 120-216 (531)
302 COG3629 DnrI DNA-binding trans 92.4 3.6 7.7E-05 37.9 12.9 67 41-107 150-216 (280)
303 KOG4814 Uncharacterized conser 92.4 0.82 1.8E-05 46.4 9.2 72 47-118 357-434 (872)
304 TIGR02561 HrpB1_HrpK type III 92.3 1.9 4.1E-05 36.0 9.9 80 47-126 13-92 (153)
305 KOG0686 COP9 signalosome, subu 91.7 1.1 2.3E-05 43.3 8.8 97 8-104 151-255 (466)
306 PF08424 NRDE-2: NRDE-2, neces 91.3 4 8.6E-05 38.1 12.3 101 3-106 15-130 (321)
307 PF12968 DUF3856: Domain of Un 91.3 1.6 3.5E-05 35.4 8.1 67 7-73 55-129 (144)
308 PF08424 NRDE-2: NRDE-2, neces 91.2 9.1 0.0002 35.7 14.5 58 60-117 47-104 (321)
309 COG5191 Uncharacterized conser 91.0 0.48 1E-05 44.3 5.5 82 40-121 103-185 (435)
310 PF07721 TPR_4: Tetratricopept 90.9 0.31 6.8E-06 28.0 2.8 23 80-102 3-25 (26)
311 PF10255 Paf67: RNA polymerase 90.7 0.4 8.7E-06 46.3 5.0 59 49-107 127-193 (404)
312 KOG3617 WD40 and TPR repeat-co 90.6 2.6 5.6E-05 44.2 10.7 99 9-107 860-996 (1416)
313 PF09670 Cas_Cas02710: CRISPR- 90.1 7.1 0.00015 37.4 13.0 63 9-72 133-197 (379)
314 COG4649 Uncharacterized protei 90.1 8 0.00017 33.5 11.7 98 9-106 96-195 (221)
315 KOG0530 Protein farnesyltransf 90.1 5.6 0.00012 36.5 11.4 104 20-126 56-161 (318)
316 PF11207 DUF2989: Protein of u 90.0 1.4 3.1E-05 38.5 7.5 72 24-98 123-198 (203)
317 PF10373 EST1_DNA_bind: Est1 D 89.9 1.4 3E-05 39.3 7.6 62 26-90 1-62 (278)
318 KOG1839 Uncharacterized protei 89.7 1 2.2E-05 48.9 7.4 105 4-108 970-1087(1236)
319 COG3118 Thioredoxin domain-con 89.7 7.9 0.00017 35.9 12.3 91 3-93 164-287 (304)
320 KOG1839 Uncharacterized protei 89.3 0.92 2E-05 49.2 6.7 101 5-107 930-1044(1236)
321 PF10602 RPN7: 26S proteasome 89.2 4.3 9.3E-05 34.6 9.7 68 41-108 33-103 (177)
322 PF11817 Foie-gras_1: Foie gra 89.2 4.9 0.00011 36.0 10.6 83 22-104 153-244 (247)
323 COG4455 ImpE Protein of avirul 89.1 2.8 6E-05 37.5 8.5 57 54-110 11-67 (273)
324 COG3914 Spy Predicted O-linked 89.0 4.7 0.0001 40.6 11.0 90 26-118 50-142 (620)
325 PF10516 SHNi-TPR: SHNi-TPR; 88.9 0.75 1.6E-05 29.3 3.6 28 46-73 3-30 (38)
326 KOG2047 mRNA splicing factor [ 88.7 4.7 0.0001 41.2 10.8 104 6-110 510-618 (835)
327 TIGR03504 FimV_Cterm FimV C-te 88.7 1.8 3.8E-05 28.5 5.4 25 82-106 3-27 (44)
328 PF14863 Alkyl_sulf_dimr: Alky 88.6 4.1 9E-05 33.6 8.9 54 76-129 68-121 (141)
329 PF10345 Cohesin_load: Cohesin 88.6 15 0.00032 37.3 14.8 123 6-129 58-192 (608)
330 COG0790 FOG: TPR repeat, SEL1 88.5 18 0.0004 32.5 15.4 95 10-112 151-271 (292)
331 PF07720 TPR_3: Tetratricopept 88.4 1.8 3.9E-05 27.1 5.1 31 46-76 3-35 (36)
332 COG3629 DnrI DNA-binding trans 88.3 2.8 6E-05 38.6 8.3 62 8-72 154-215 (280)
333 PF10255 Paf67: RNA polymerase 88.2 2.3 5E-05 41.2 8.1 99 11-110 126-231 (404)
334 PRK13184 pknD serine/threonine 88.0 3.1 6.7E-05 44.5 9.6 101 22-126 534-642 (932)
335 PF07721 TPR_4: Tetratricopept 87.7 0.73 1.6E-05 26.4 2.8 24 45-68 2-25 (26)
336 COG2976 Uncharacterized protei 87.7 9.6 0.00021 33.4 10.8 59 46-104 91-152 (207)
337 PF11817 Foie-gras_1: Foie gra 87.6 2.5 5.4E-05 37.9 7.6 65 7-71 178-245 (247)
338 KOG2422 Uncharacterized conser 87.2 19 0.00042 36.4 13.9 102 3-104 280-404 (665)
339 KOG2300 Uncharacterized conser 86.6 7.5 0.00016 38.6 10.5 95 7-101 46-150 (629)
340 KOG2047 mRNA splicing factor [ 86.0 13 0.00028 38.2 12.0 103 7-109 425-542 (835)
341 COG3898 Uncharacterized membra 85.6 19 0.00042 34.9 12.5 98 14-112 195-297 (531)
342 PF11207 DUF2989: Protein of u 85.5 7.1 0.00015 34.2 9.0 67 60-128 122-194 (203)
343 COG4941 Predicted RNA polymera 85.2 5.9 0.00013 37.5 8.7 99 22-124 311-411 (415)
344 PF10345 Cohesin_load: Cohesin 84.7 25 0.00054 35.7 14.0 94 9-102 303-428 (608)
345 PF04910 Tcf25: Transcriptiona 84.7 13 0.00028 35.4 11.2 98 10-110 106-225 (360)
346 PF04053 Coatomer_WDAD: Coatom 84.6 3 6.4E-05 40.9 6.9 46 55-105 329-374 (443)
347 PF07079 DUF1347: Protein of u 84.6 6.3 0.00014 38.8 8.9 59 8-70 463-521 (549)
348 PF14863 Alkyl_sulf_dimr: Alky 84.2 4 8.6E-05 33.7 6.5 51 45-95 71-121 (141)
349 COG5191 Uncharacterized conser 84.1 1.9 4.1E-05 40.5 5.0 77 4-83 104-181 (435)
350 cd02682 MIT_AAA_Arch MIT: doma 84.1 7.3 0.00016 28.7 7.2 30 7-36 6-35 (75)
351 KOG2396 HAT (Half-A-TPR) repea 83.5 13 0.00028 37.0 10.6 74 5-81 103-177 (568)
352 KOG0739 AAA+-type ATPase [Post 83.5 7 0.00015 36.7 8.4 55 183-241 121-177 (439)
353 PRK15180 Vi polysaccharide bio 83.4 3.5 7.6E-05 40.9 6.7 84 15-101 297-380 (831)
354 KOG2114 Vacuolar assembly/sort 82.8 9.3 0.0002 40.1 9.8 31 7-37 368-398 (933)
355 KOG0529 Protein geranylgeranyl 82.4 20 0.00043 34.7 11.3 108 20-130 88-201 (421)
356 KOG0546 HSP90 co-chaperone CPR 81.9 0.91 2E-05 42.9 2.1 80 11-93 279-358 (372)
357 KOG4563 Cell cycle-regulated h 81.9 3.6 7.7E-05 39.2 6.0 57 7-63 41-102 (400)
358 PF06957 COPI_C: Coatomer (COP 81.2 12 0.00025 36.6 9.4 114 8-121 205-343 (422)
359 PRK15180 Vi polysaccharide bio 81.2 10 0.00022 37.8 8.9 105 4-111 320-424 (831)
360 KOG1310 WD40 repeat protein [G 81.0 4.1 9E-05 40.8 6.3 71 4-77 405-478 (758)
361 KOG2561 Adaptor protein NUB1, 80.4 12 0.00026 36.7 9.0 98 9-106 165-295 (568)
362 TIGR03504 FimV_Cterm FimV C-te 80.3 3.3 7.2E-05 27.2 3.8 26 47-72 2-27 (44)
363 PF10952 DUF2753: Protein of u 80.2 11 0.00024 30.7 7.4 62 9-70 3-76 (140)
364 COG4649 Uncharacterized protei 80.0 13 0.00027 32.4 8.1 75 13-90 138-212 (221)
365 PF09205 DUF1955: Domain of un 79.6 18 0.00039 30.0 8.6 52 56-107 98-149 (161)
366 PF15015 NYD-SP12_N: Spermatog 79.2 12 0.00025 36.7 8.5 81 49-129 181-279 (569)
367 KOG2422 Uncharacterized conser 79.2 27 0.00059 35.4 11.3 94 20-113 251-378 (665)
368 cd02683 MIT_1 MIT: domain cont 78.7 10 0.00022 27.9 6.4 31 6-36 5-35 (77)
369 PF04212 MIT: MIT (microtubule 78.1 14 0.0003 26.1 6.8 30 7-36 5-34 (69)
370 KOG0530 Protein farnesyltransf 77.9 36 0.00078 31.4 10.8 84 22-108 93-177 (318)
371 KOG3617 WD40 and TPR repeat-co 77.7 13 0.00027 39.4 8.7 64 44-107 858-941 (1416)
372 TIGR02710 CRISPR-associated pr 77.6 34 0.00075 32.9 11.3 66 3-68 124-195 (380)
373 KOG2041 WD40 repeat protein [G 77.4 10 0.00022 39.3 7.9 78 9-101 798-875 (1189)
374 KOG0985 Vesicle coat protein c 77.1 8.3 0.00018 41.6 7.3 101 4-121 1192-1322(1666)
375 PHA02537 M terminase endonucle 77.0 4.7 0.0001 36.1 5.0 109 17-126 93-225 (230)
376 COG3947 Response regulator con 76.6 11 0.00025 35.1 7.4 58 10-70 282-339 (361)
377 KOG0529 Protein geranylgeranyl 75.5 76 0.0016 30.9 12.9 107 19-128 40-161 (421)
378 cd02682 MIT_AAA_Arch MIT: doma 75.5 18 0.0004 26.5 6.9 23 101-123 36-58 (75)
379 PF04053 Coatomer_WDAD: Coatom 75.2 17 0.00037 35.6 8.8 76 15-98 326-409 (443)
380 PF12739 TRAPPC-Trs85: ER-Golg 74.6 52 0.0011 31.8 11.9 102 6-107 206-329 (414)
381 KOG1258 mRNA processing protei 74.4 85 0.0018 31.9 13.4 114 10-126 300-414 (577)
382 COG5091 SGT1 Suppressor of G2 73.7 6.6 0.00014 36.1 5.0 106 16-126 4-126 (368)
383 cd02678 MIT_VPS4 MIT: domain c 73.1 19 0.00041 26.0 6.6 30 7-36 6-35 (75)
384 smart00745 MIT Microtubule Int 72.8 20 0.00043 25.8 6.7 30 7-36 8-37 (77)
385 KOG0889 Histone acetyltransfer 72.0 31 0.00068 41.7 10.8 93 39-132 2807-2907(3550)
386 COG2909 MalT ATP-dependent tra 71.8 57 0.0012 34.7 11.8 102 7-108 415-527 (894)
387 PF13226 DUF4034: Domain of un 71.6 68 0.0015 29.5 11.3 113 13-126 6-147 (277)
388 PF08311 Mad3_BUB1_I: Mad3/BUB 70.4 26 0.00056 28.1 7.4 83 21-105 40-126 (126)
389 cd02656 MIT MIT: domain contai 70.3 24 0.00053 25.2 6.6 30 7-36 6-35 (75)
390 KOG0292 Vesicle coat complex C 69.2 1E+02 0.0022 33.2 12.8 111 7-117 991-1123(1202)
391 PF11846 DUF3366: Domain of un 69.0 37 0.00081 28.8 8.6 52 60-112 127-178 (193)
392 smart00386 HAT HAT (Half-A-TPR 69.0 17 0.00037 20.5 4.7 26 93-118 2-27 (33)
393 KOG3783 Uncharacterized conser 68.6 33 0.00072 34.4 9.0 77 4-82 264-340 (546)
394 KOG1914 mRNA cleavage and poly 68.5 27 0.00059 35.2 8.3 66 3-72 16-81 (656)
395 PF00244 14-3-3: 14-3-3 protei 68.2 17 0.00038 32.4 6.6 49 24-72 143-197 (236)
396 COG5159 RPN6 26S proteasome re 68.0 57 0.0012 30.6 9.8 52 11-62 7-63 (421)
397 KOG0276 Vesicle coat complex C 67.4 32 0.0007 35.2 8.7 52 51-107 644-695 (794)
398 KOG3807 Predicted membrane pro 67.2 1E+02 0.0022 29.6 11.4 90 15-109 192-306 (556)
399 cd02684 MIT_2 MIT: domain cont 66.9 29 0.00063 25.3 6.4 30 7-36 6-35 (75)
400 COG2909 MalT ATP-dependent tra 66.7 91 0.002 33.2 12.0 94 8-101 459-562 (894)
401 PF04190 DUF410: Protein of un 66.6 1E+02 0.0022 27.9 11.7 96 7-102 10-114 (260)
402 PF15469 Sec5: Exocyst complex 66.5 57 0.0012 27.5 9.2 20 55-74 97-116 (182)
403 KOG4459 Membrane-associated pr 65.6 31 0.00067 33.9 8.0 119 6-126 30-181 (471)
404 KOG3783 Uncharacterized conser 64.9 49 0.0011 33.2 9.3 82 44-125 449-538 (546)
405 PF12854 PPR_1: PPR repeat 64.7 16 0.00035 22.1 4.0 27 43-69 6-32 (34)
406 cd02681 MIT_calpain7_1 MIT: do 64.7 15 0.00033 27.0 4.6 30 7-36 6-35 (76)
407 COG4455 ImpE Protein of avirul 64.2 1.1E+02 0.0024 27.6 13.3 64 13-79 7-70 (273)
408 smart00386 HAT HAT (Half-A-TPR 63.9 24 0.00052 19.8 4.7 27 59-85 2-28 (33)
409 cd02680 MIT_calpain7_2 MIT: do 63.8 13 0.00028 27.4 4.0 29 8-36 7-35 (75)
410 KOG0890 Protein kinase of the 63.6 98 0.0021 36.5 12.3 112 3-119 1666-1796(2382)
411 PF09205 DUF1955: Domain of un 62.8 79 0.0017 26.3 8.7 62 9-73 87-149 (161)
412 PF07219 HemY_N: HemY protein 62.5 42 0.00091 26.0 7.0 47 47-93 62-108 (108)
413 PF13041 PPR_2: PPR repeat fam 62.4 39 0.00085 21.8 6.1 29 45-73 4-32 (50)
414 KOG0985 Vesicle coat protein c 62.1 58 0.0013 35.6 9.6 62 42-108 1102-1163(1666)
415 PF04212 MIT: MIT (microtubule 61.5 15 0.00033 25.9 4.0 22 50-71 11-32 (69)
416 PF12854 PPR_1: PPR repeat 59.5 26 0.00057 21.1 4.3 28 76-103 5-32 (34)
417 KOG1258 mRNA processing protei 58.8 2.1E+02 0.0047 29.1 14.0 119 4-125 363-488 (577)
418 PF01535 PPR: PPR repeat; Int 57.8 17 0.00038 20.4 3.2 25 47-71 3-27 (31)
419 cd02683 MIT_1 MIT: domain cont 57.0 59 0.0013 23.8 6.6 25 99-123 34-58 (77)
420 cd02677 MIT_SNX15 MIT: domain 57.0 74 0.0016 23.2 7.5 30 7-36 6-35 (75)
421 PF10938 YfdX: YfdX protein; 56.6 1.2E+02 0.0025 25.3 11.5 98 9-106 4-145 (155)
422 KOG2581 26S proteasome regulat 56.3 1.4E+02 0.0031 29.2 10.5 62 15-76 217-279 (493)
423 PRK11619 lytic murein transgly 56.3 1.1E+02 0.0024 31.6 10.6 56 51-106 319-374 (644)
424 KOG1497 COP9 signalosome, subu 55.9 1.9E+02 0.0041 27.6 11.2 97 9-106 105-212 (399)
425 smart00745 MIT Microtubule Int 55.9 27 0.00058 25.0 4.6 17 55-71 19-35 (77)
426 KOG1914 mRNA cleavage and poly 55.7 1.8E+02 0.0039 29.6 11.4 73 31-107 10-82 (656)
427 KOG4563 Cell cycle-regulated h 55.5 23 0.0005 33.9 5.1 55 47-101 44-106 (400)
428 PF05053 Menin: Menin; InterP 54.7 39 0.00085 34.2 6.8 47 24-70 296-344 (618)
429 TIGR00756 PPR pentatricopeptid 54.7 30 0.00066 19.6 4.0 25 47-71 3-27 (35)
430 PRK15490 Vi polysaccharide bio 54.6 2.1E+02 0.0046 29.2 12.0 79 19-102 20-98 (578)
431 KOG0890 Protein kinase of the 54.5 36 0.00079 39.8 7.2 95 12-112 1388-1483(2382)
432 cd02680 MIT_calpain7_2 MIT: do 54.5 26 0.00056 25.8 4.2 18 56-73 18-35 (75)
433 COG5159 RPN6 26S proteasome re 54.3 1E+02 0.0022 29.0 8.9 97 12-108 130-236 (421)
434 KOG1463 26S proteasome regulat 51.7 40 0.00086 32.2 5.9 96 12-107 133-238 (411)
435 PF13812 PPR_3: Pentatricopept 51.5 45 0.00097 19.1 4.4 26 47-72 4-29 (34)
436 PF04348 LppC: LppC putative l 51.5 4.9 0.00011 40.4 0.0 119 7-125 24-145 (536)
437 cd02656 MIT MIT: domain contai 51.3 38 0.00082 24.2 4.7 16 56-71 18-33 (75)
438 PF08238 Sel1: Sel1 repeat; I 50.7 40 0.00087 20.1 4.2 14 94-107 24-37 (39)
439 PF05053 Menin: Menin; InterP 50.5 75 0.0016 32.3 7.9 46 61-106 296-346 (618)
440 KOG3807 Predicted membrane pro 50.0 2.4E+02 0.0053 27.1 11.3 105 10-117 278-401 (556)
441 KOG0739 AAA+-type ATPase [Post 47.9 1.1E+02 0.0024 29.0 8.1 19 18-36 21-39 (439)
442 KOG1463 26S proteasome regulat 47.5 1.4E+02 0.003 28.6 8.8 112 9-123 211-329 (411)
443 cd02681 MIT_calpain7_1 MIT: do 47.3 46 0.001 24.4 4.6 24 47-70 9-32 (76)
444 KOG0276 Vesicle coat complex C 47.2 96 0.0021 31.9 8.1 81 16-104 646-747 (794)
445 KOG2041 WD40 repeat protein [G 47.1 45 0.00097 34.9 5.9 71 20-102 747-820 (1189)
446 smart00671 SEL1 Sel1-like repe 47.0 38 0.00083 19.7 3.6 27 80-106 3-33 (36)
447 PF07219 HemY_N: HemY protein 47.0 1.1E+02 0.0023 23.7 7.0 36 78-114 59-94 (108)
448 PF03097 BRO1: BRO1-like domai 46.8 2.5E+02 0.0054 26.3 11.3 27 80-106 241-267 (377)
449 cd02679 MIT_spastin MIT: domai 46.4 40 0.00086 25.0 4.2 26 11-36 12-37 (79)
450 KOG2758 Translation initiation 45.7 1.2E+02 0.0025 29.0 8.0 68 40-107 125-196 (432)
451 TIGR03362 VI_chp_7 type VI sec 45.4 1.1E+02 0.0024 28.4 7.9 58 13-70 219-276 (301)
452 KOG2330 Splicing factor 3b, su 44.8 19 0.00041 35.0 2.7 29 235-263 354-382 (500)
453 PF09797 NatB_MDM20: N-acetylt 43.7 1.5E+02 0.0033 27.8 8.8 46 57-102 196-241 (365)
454 KOG4014 Uncharacterized conser 43.3 2.3E+02 0.0051 24.9 10.6 112 8-128 69-216 (248)
455 KOG1464 COP9 signalosome, subu 41.7 76 0.0016 29.6 6.0 53 20-72 40-93 (440)
456 PF01239 PPTA: Protein prenylt 41.1 73 0.0016 18.5 4.6 26 64-89 3-28 (31)
457 PF14689 SPOB_a: Sensor_kinase 41.0 1.2E+02 0.0026 21.0 5.8 32 40-71 19-50 (62)
458 cd02678 MIT_VPS4 MIT: domain c 40.9 1.3E+02 0.0029 21.5 6.7 13 91-103 19-31 (75)
459 PF13041 PPR_2: PPR repeat fam 40.8 96 0.0021 19.8 6.2 39 78-116 3-43 (50)
460 PF03745 DUF309: Domain of unk 40.5 1.1E+02 0.0025 21.3 5.6 25 11-35 3-27 (62)
461 PF15297 CKAP2_C: Cytoskeleton 40.3 1.4E+02 0.003 28.5 7.7 51 60-110 119-172 (353)
462 PF02064 MAS20: MAS20 protein 40.2 68 0.0015 25.8 5.0 28 50-77 69-96 (121)
463 cd00280 TRFH Telomeric Repeat 40.1 72 0.0016 27.8 5.3 49 52-101 119-167 (200)
464 KOG1464 COP9 signalosome, subu 39.8 95 0.0021 29.0 6.3 49 57-105 40-92 (440)
465 PF15473 PCNP: PEST, proteolyt 39.5 7.9 0.00017 32.1 -0.5 17 264-280 103-119 (150)
466 PF14812 PBP1_TM: Transmembran 39.3 9.9 0.00021 28.4 0.0 9 231-239 13-21 (81)
467 COG2015 Alkyl sulfatase and re 39.2 73 0.0016 31.9 5.8 50 48-97 456-505 (655)
468 smart00101 14_3_3 14-3-3 homol 38.9 1E+02 0.0022 27.8 6.4 48 24-71 145-198 (244)
469 KOG3677 RNA polymerase I-assoc 38.7 32 0.0007 33.6 3.3 51 52-106 243-300 (525)
470 PF10938 YfdX: YfdX protein; 37.0 1.6E+02 0.0035 24.5 7.0 66 7-72 75-145 (155)
471 PF14851 FAM176: FAM176 family 36.9 26 0.00057 29.4 2.2 14 234-247 55-68 (153)
472 COG5600 Transcription-associat 36.7 1E+02 0.0022 29.7 6.3 62 49-110 182-252 (413)
473 KOG2758 Translation initiation 36.7 1.3E+02 0.0027 28.7 6.7 70 4-73 126-196 (432)
474 PF11846 DUF3366: Domain of un 36.6 1.5E+02 0.0033 25.0 7.0 34 42-75 142-175 (193)
475 PF04190 DUF410: Protein of un 36.3 2.9E+02 0.0063 24.8 9.1 65 43-107 89-170 (260)
476 cd02677 MIT_SNX15 MIT: domain 35.8 1.2E+02 0.0025 22.1 5.2 14 58-71 20-33 (75)
477 KOG4014 Uncharacterized conser 34.8 3.2E+02 0.007 24.1 9.2 94 18-113 38-147 (248)
478 KOG1076 Translation initiation 34.2 4.2E+02 0.0091 27.9 10.4 41 75-115 650-693 (843)
479 PRK15490 Vi polysaccharide bio 34.1 2.1E+02 0.0044 29.3 8.3 66 49-114 13-78 (578)
480 cd08977 SusD starch binding ou 33.6 1.6E+02 0.0034 27.3 7.2 63 44-106 99-209 (359)
481 PF09670 Cas_Cas02710: CRISPR- 33.6 3.1E+02 0.0068 26.2 9.3 62 46-107 133-198 (379)
482 smart00299 CLH Clathrin heavy 33.6 2.3E+02 0.0051 22.1 7.6 65 14-93 76-140 (140)
483 PF08771 Rapamycin_bind: Rapam 33.2 2E+02 0.0042 22.1 6.4 77 50-126 20-98 (100)
484 KOG2168 Cullins [Cell cycle co 33.1 6.4E+02 0.014 27.0 12.4 100 9-112 624-740 (835)
485 PF12739 TRAPPC-Trs85: ER-Golg 33.0 4E+02 0.0088 25.6 10.0 24 85-108 377-400 (414)
486 PF10952 DUF2753: Protein of u 32.9 2.3E+02 0.0049 23.2 6.8 64 47-110 4-86 (140)
487 COG1747 Uncharacterized N-term 32.3 5.6E+02 0.012 26.2 12.6 106 8-118 100-245 (711)
488 KOG3616 Selective LIM binding 32.2 1.8E+02 0.0038 31.0 7.4 65 42-106 822-910 (1636)
489 PF09797 NatB_MDM20: N-acetylt 32.0 1.6E+02 0.0035 27.6 7.0 47 21-70 197-243 (365)
490 KOG1811 Predicted Zn2+-binding 31.9 2.4E+02 0.0052 29.3 8.2 53 54-109 566-618 (1141)
491 PF12583 TPPII_N: Tripeptidyl 31.8 1.6E+02 0.0035 24.1 5.9 37 53-89 85-121 (139)
492 PF12455 Dynactin: Dynein asso 31.6 4E+02 0.0087 24.3 9.4 115 8-127 116-241 (274)
493 COG2178 Predicted RNA-binding 31.5 3.6E+02 0.0078 23.7 9.7 91 12-102 34-145 (204)
494 PF02064 MAS20: MAS20 protein 31.4 1.4E+02 0.0031 23.9 5.5 35 82-116 67-101 (121)
495 COG5187 RPN7 26S proteasome re 31.4 4.6E+02 0.0099 24.8 9.4 92 21-112 89-189 (412)
496 KOG0889 Histone acetyltransfer 31.0 3.8E+02 0.0083 33.3 10.6 118 7-124 2736-2858(3550)
497 KOG3616 Selective LIM binding 30.9 1.5E+02 0.0032 31.6 6.6 17 85-101 772-788 (1636)
498 cd02679 MIT_spastin MIT: domai 30.7 1E+02 0.0022 22.8 4.2 34 59-107 4-37 (79)
499 PF04090 RNA_pol_I_TF: RNA pol 30.7 2.2E+02 0.0047 25.0 6.9 65 45-109 42-107 (199)
500 COG5107 RNA14 Pre-mRNA 3'-end 30.3 5.8E+02 0.013 25.7 11.6 103 15-120 440-544 (660)
No 1
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=6.7e-20 Score=165.49 Aligned_cols=120 Identities=25% Similarity=0.410 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ 86 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~ 86 (281)
++.++..|+.+.+.++|.+|+..|++||.+ +|.++.+|.|||.+|.++|.|+.|+++|+.+|.++|.+.++|.+||.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l---~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~ 157 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIEL---DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGL 157 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 678999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491 87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAP 129 (281)
Q Consensus 87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~ 129 (281)
+|+.+|++.+|+..|+++|+++|+|+.++.+|..++..+.+..
T Consensus 158 A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 158 AYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999998887665
No 2
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.69 E-value=1.4e-15 Score=125.82 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=112.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
++..+...|..++..|+|.+|+.+|.+++.. +|.+..+++++|.++.++|++.+|+..|.+++.++|.++.+++++|
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4556778999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
.++..+|++++|+..|++++.+.|+++..+.+++.++..+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877654
No 3
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.67 E-value=1.8e-15 Score=142.90 Aligned_cols=117 Identities=21% Similarity=0.382 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT 87 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a 87 (281)
..++..|..+|..|+|..|+.+|.++|.+ +|.+..+|++||.||+++|+|.+|+.+|.++|.++|.++.+|+++|.+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 35788999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491 88 LVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL 127 (281)
Q Consensus 88 ~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~ 127 (281)
|+.+|+|.+|+.+|+++++++|++..+..++..+...+..
T Consensus 80 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888854
No 4
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=9.2e-16 Score=147.21 Aligned_cols=122 Identities=31% Similarity=0.491 Sum_probs=117.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 023491 1 MASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA 80 (281)
Q Consensus 1 ~a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a 80 (281)
|.+|..+...+..|+.+|+.|+|..|+.+|+++|.. +|.++.+|.|||.||.++|.|..|+.+|..+|+++|++.++
T Consensus 352 ~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 352 YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 456778889999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
|++.|.|+..+.+|..|+..|+++++++|.+.++...+.++...+
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988876
No 5
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.6e-15 Score=140.58 Aligned_cols=122 Identities=37% Similarity=0.560 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK------------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD 74 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~ 74 (281)
+...++.|+.+|+.|+|..|+..|.+++..++ .......+++|+|.||+++++|..|+..|.++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999998864 223456789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491 75 YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 75 p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
|+|.+++|++|.||..+|+|+.|+.+|++++++.|.|..+...+.+|+......
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877644
No 6
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.63 E-value=1.8e-14 Score=116.16 Aligned_cols=122 Identities=24% Similarity=0.321 Sum_probs=115.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL 81 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~ 81 (281)
.+|.++...+.+|..++..|++.+|+..|++++.. +|.+..+++++|.+++++|++..|+..|.+++.++|.++..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 88 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPY 88 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 36888899999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+++|.++...|+++.|+..|+++++++|++.....+...+...+.
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998888877776653
No 7
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=4.7e-15 Score=127.72 Aligned_cols=120 Identities=31% Similarity=0.494 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIK--QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR 84 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~--p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l 84 (281)
+..++..|+.+|.+|+|.+|...|..||.+++.- .....+|.|||.|+++++.++.||.+|+++|+++|.+-+++.++
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 5678889999999999999999999999998733 35688999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
|.+|.++..|++|+.+|.+.++++|....++....+|-.++.
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999988887777765543
No 8
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.55 E-value=1.6e-13 Score=114.66 Aligned_cols=119 Identities=11% Similarity=0.067 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
+...+.++..|..++..|++++|...|+-+..+ +|.++..|+++|.|+..+|+|.+||..|..++.++|+++.++++
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY---DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 456778899999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
+|.|++.+|+...|.+.|+.++...-.++.-.....+.+..+
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 999999999999999999999998755555555555444443
No 9
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.55 E-value=2.3e-13 Score=118.54 Aligned_cols=120 Identities=21% Similarity=0.234 Sum_probs=109.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhcCCCH
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACY-LKLHD--FKKAAEECTSVLELDYNHT 78 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~-~klg~--y~~Ai~~~~~al~i~p~~~ 78 (281)
.+|.++..|+.+|..+...|+++.|+..|.+++.+ .|.+..+++++|.++ +..|+ +.+|+..+.++++++|++.
T Consensus 68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV 144 (198)
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence 37999999999999999999999999999999999 999999999999985 68788 5999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
.+++++|.+++..|+|++|+.+|+++++++|.+..-...+..|...
T Consensus 145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~~a 190 (198)
T PRK10370 145 TALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESINMA 190 (198)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999876555555555544
No 10
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.51 E-value=5.3e-14 Score=129.53 Aligned_cols=115 Identities=29% Similarity=0.435 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT 87 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a 87 (281)
..++++|+.||++|.|++||.+|.++|.. .|.++.++.|||.+|++++.|..|..+|..|+.++..+.++|-++|.+
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 45789999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 88 LVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 88 ~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
...+|...+|.++++.+|+|.|.+.+++..++.|...+
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~ 212 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR 212 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence 99999999999999999999999988888877776544
No 11
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.49 E-value=1.1e-12 Score=120.64 Aligned_cols=106 Identities=21% Similarity=0.134 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491 5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR 84 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l 84 (281)
..+..++.+|..+...|++.+|+..|.+++.+ +|.++.+|+++|.++..+|+|+.|+..|.++++++|++..+|+++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 138 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALAL---RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34778999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023491 85 AQTLVTLKEYNSALFDVNRLIELNPSSEV 113 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~ 113 (281)
|.+++..|++++|+..|++++.++|+++.
T Consensus 139 g~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 139 GIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999974
No 12
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.9e-13 Score=130.22 Aligned_cols=113 Identities=23% Similarity=0.373 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ 86 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~ 86 (281)
+..+..+|+.+|..|+|+.|+.+|+.+|.+ +|.+..+|.||+.||..+|+|.+|+++..+.++++|.++++|+++|.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l---~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Ga 78 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIML---SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGA 78 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHcc---CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHH
Confidence 356789999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491 87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122 (281)
Q Consensus 87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~ 122 (281)
+++.+|+|++|+..|.+.|+.+|+|..+...+..+.
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999998888776
No 13
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.46 E-value=2.9e-12 Score=99.89 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALML 83 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~ 83 (281)
++.++..|..++..|+|.+|+..|..++...+.++....+++.+|.++++.|+|+.|+..|..++..+|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 46789999999999999999999999999833334447889999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~ 119 (281)
+|.++..+|++.+|+..|.+++...|++..+...+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 999999999999999999999999999987766543
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.46 E-value=2.1e-13 Score=133.05 Aligned_cols=121 Identities=19% Similarity=0.178 Sum_probs=104.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
+|.-+.+++++|+++-..+.|+.|+.+|.+|+.+ .|..+.++-|+|.+|+.+|..+.||..|+++|.+.|+++.+|.
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~ 324 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYN 324 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc---CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHh
Confidence 5777888888999988888999999999888888 8888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
++|+++-..|+..+|+.+|.+||.+.|..+.+..+++.+++.+.
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888877654
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=8e-13 Score=126.13 Aligned_cols=117 Identities=30% Similarity=0.520 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
-+..++.+|+.+|++|.|++||.+|+.||.+ .|..+.+|.||+.||-.+|++++.+++|+++|+++|++.++|++|+
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA 190 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRA 190 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 3668899999999999999999999999999 7777999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhh
Q 023491 86 QTLVTLKEYNSALFDVNRLIELNP--SSEVYQNLQARLKTQLS 126 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~ldP--~~~~a~~~l~~l~~~l~ 126 (281)
.++..+|++.+|+.++.- +.+.. .|..+...+.++.+++.
T Consensus 191 ~A~E~lg~~~eal~D~tv-~ci~~~F~n~s~~~~~eR~Lkk~a 232 (606)
T KOG0547|consen 191 SAHEQLGKFDEALFDVTV-LCILEGFQNASIEPMAERVLKKQA 232 (606)
T ss_pred HHHHhhccHHHHHHhhhH-HHHhhhcccchhHHHHHHHHHHHH
Confidence 999999999999999864 44433 35555566666655544
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.42 E-value=6.4e-12 Score=126.31 Aligned_cols=117 Identities=17% Similarity=0.140 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
|..+..++.+|.+++..|+|++|+..|.+++.. +|.+..+++++|.+++.+|+|++|+.+|.+++.++|++..++++
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 444444455555555555555555555555554 44455555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT 123 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~ 123 (281)
+|.+++.+|++++|+..|++++.+.|.++.+...++.+..
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 5555555555555555555555555555554444444443
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.42 E-value=1.4e-12 Score=127.38 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
|..+++..++|+.+..+|.++.|+.+|..++.. .|..+.++.|+|.+|.++|++++|+.+|..+|+|.|.++.+|-+
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 444455555555555555555555555555555 55555555555555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT 123 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~ 123 (281)
+|++|-.+|+...|+++|.+|+.++|..+++..+++.+.+
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 5555555555555555555555555555555555544444
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.41 E-value=6.1e-12 Score=126.44 Aligned_cols=121 Identities=20% Similarity=0.146 Sum_probs=113.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
.|..+..+..+|.+++..|++++|+..|.+++.+ +|....+|+++|.+++.+|++++|+..|.+++.++|+++.+|+
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 403 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL---DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY 403 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3667888999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
.+|.+++.+|++++|+.+|++++.++|++..++..++.+...++
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999988888777765543
No 19
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.36 E-value=4.1e-12 Score=91.14 Aligned_cols=67 Identities=24% Similarity=0.374 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 023491 43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLK-EYNSALFDVNRLIELNP 109 (281)
Q Consensus 43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g-~~~eAl~~~ekAL~ldP 109 (281)
++.+|+++|.+++.+|+|++|+..|+++|+++|+++.+|+++|.++..+| ++.+|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677888888888888888888888888888888888888888888888 68888888888888877
No 20
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.33 E-value=4.7e-11 Score=101.14 Aligned_cols=110 Identities=24% Similarity=0.205 Sum_probs=97.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
++..+..++.+|..++..|+|.+|+.+|.+++...+..+....+++++|.+++++|+|++|+..|.+++.+.|.+..+++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34677889999999999999999999999999873322234678999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCH
Q 023491 83 LRAQTLVTLKE--------------YNSALFDVNRLIELNPSSE 112 (281)
Q Consensus 83 ~lg~a~~~~g~--------------~~eAl~~~ekAL~ldP~~~ 112 (281)
.+|.++..+|+ +..|++.+++++.++|++-
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 99999999988 6889999999999999873
No 21
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=4.2e-11 Score=119.28 Aligned_cols=121 Identities=9% Similarity=-0.010 Sum_probs=109.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
+|.++..+..+|..+...|++++|+.+|.+++.+ +|.++.+++++|.+++.+|++++|+..|.++++++|.++.+++
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 6889999999999999999999999999999999 9999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhh
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELN-PSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ld-P~~~~a~~~l~~l~~~l~ 126 (281)
.++.+++..|++++|+..+++++... |+++.+..+++.+...++
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG 455 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence 88888888999999999999999885 778888888887765544
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.9e-12 Score=127.09 Aligned_cols=123 Identities=17% Similarity=0.203 Sum_probs=100.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
+|..++.|...|+|+-.+++++.||.+|.+||.+ +|..+-+|.-+|+=+....+|+.|..+|+.||.++|++-.|||
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY 493 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY 493 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence 5889999999999999999999999999999999 7777777777777777777777888888777777777777788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
.+|.+|.+.++++.|...|++|++++|.+..+.-.++.+...++..
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh
Confidence 8888777777777777777777777777777766666666655433
No 23
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.32 E-value=3.4e-11 Score=86.74 Aligned_cols=99 Identities=29% Similarity=0.454 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL 88 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~ 88 (281)
.++..|..++..|++.+|+..|.+++.. .|....+++.+|.+++..+++++|+..|..++.+.|.+..+++.+|.++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 5788999999999999999999999998 7777889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 023491 89 VTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 89 ~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
...|++..|...+.+++.+.|.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999988873
No 24
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=7e-12 Score=117.75 Aligned_cols=122 Identities=25% Similarity=0.415 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
|.-...+...|+.+|+.|.|..|.++|+.+|.+.| .....+.+|.|||.+..++|+..+||.+|..++.|++...++|+
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 33456788999999999999999999999999944 11245888999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
.+|+|+..+++|++|+++|++|+++.-+ ...+..+...+..|+
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 9999999999999999999999999866 555555555554444
No 25
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=1.2e-10 Score=107.36 Aligned_cols=119 Identities=13% Similarity=0.057 Sum_probs=102.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---- 78 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---- 78 (281)
+|.++.+++.+|..+...|+|+.|+..|.+++.+ +|....+++++|.+++..|++++|+.+|.+++.++|+++
T Consensus 94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~ 170 (296)
T PRK11189 94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL 170 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6889999999999999999999999999999999 999999999999999999999999999998888765432
Q ss_pred ------------------------------------------------------------------HHHHHHHHHHHHcC
Q 023491 79 ------------------------------------------------------------------GALMLRAQTLVTLK 92 (281)
Q Consensus 79 ------------------------------------------------------------------~a~~~lg~a~~~~g 92 (281)
.+|+++|.++..+|
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g 250 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLG 250 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 25788899999999
Q ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Q 023491 93 EYNSALFDVNRLIELNP-SSEVYQNLQARLKTQ 124 (281)
Q Consensus 93 ~~~eAl~~~ekAL~ldP-~~~~a~~~l~~l~~~ 124 (281)
++++|+.+|++++.++| +..+.+..+-.+...
T Consensus 251 ~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 251 DLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred CHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 99999999999999997 555665555555444
No 26
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3e-11 Score=107.10 Aligned_cols=119 Identities=24% Similarity=0.356 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAK---------------IKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a 70 (281)
+...+.+.|+.+|+.|+|.+|+..|..||.... .+.....+++|.+.|++..|+|.++++.|+.+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 456788999999999999999999999987642 34456788999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHH
Q 023491 71 LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEV-YQNLQARLKTQ 124 (281)
Q Consensus 71 l~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~-a~~~l~~l~~~ 124 (281)
|..+|.+.++||.+|.++....+.++|.++|.++|+++|.-.. +...+..+...
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r 311 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENR 311 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997543 33334444333
No 27
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=1.9e-10 Score=97.88 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD--YNHTGAL 81 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~--p~~~~a~ 81 (281)
|.++..+...|..++..|++.+|+..|.+++.. .|....+++++|.+++..|++++|+..|.+++... +.....+
T Consensus 62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 138 (234)
T TIGR02521 62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTL---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSL 138 (234)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHH
Confidence 444555555555555555555555555555555 44455555555555555555555555555555432 2334455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
+.+|.++...|++.+|+..|.+++..+|.+..+...++.+...
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 139 ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 5555556666666666666666666666555555544444433
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=6.6e-11 Score=117.85 Aligned_cols=115 Identities=11% Similarity=-0.013 Sum_probs=104.8
Q ss_pred CCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 3 SPAAPANKIERAHQLYRD---------GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL 73 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~---------gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i 73 (281)
+|.++..+...|.+++.. +++.+|+..+.+++.+ +|.++.++..+|.+++..|++++|+..|++++++
T Consensus 291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l---dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 367 (553)
T PRK12370 291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL---DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL 367 (553)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 688999999999877643 4589999999999999 9999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491 74 DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR 120 (281)
Q Consensus 74 ~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~ 120 (281)
+|+++.+|+.+|.++..+|++++|+..|+++++++|.+..+...+..
T Consensus 368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 368 SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 99999999999999999999999999999999999998766544433
No 29
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.29 E-value=1.7e-11 Score=113.18 Aligned_cols=114 Identities=26% Similarity=0.352 Sum_probs=106.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL 81 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~ 81 (281)
.+|.+++.++++|..++.+|+|..|+.+|..|+.. +|.+..++|.||.+|+.+|+-.-|+.+++++|++.|++..+.
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~---dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG---DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH
Confidence 46778899999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l 118 (281)
..+|.+++++|+++.|..+|..+|..+|.+.......
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaq 146 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQ 146 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 9999999999999999999999999999765444433
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.28 E-value=8.7e-11 Score=123.63 Aligned_cols=116 Identities=10% Similarity=0.043 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
+|. +..+...|.++.+.|++++|+..|.+++.+ +|.++.+++++|.++..+|++++|+..|.++++++|+++.+++
T Consensus 606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~ 681 (987)
T PRK09782 606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR 681 (987)
T ss_pred CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 353 667777777777777777777777777777 7777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~ 122 (281)
++|.++..+|++++|+..|++++.++|++..+....+.+.
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 7777777777777777777777777777665554444333
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=3.3e-10 Score=96.36 Aligned_cols=122 Identities=22% Similarity=0.239 Sum_probs=108.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
.|.+...+...|..++..|++.+|+..|.+++.... .+....+++++|.+++..|++.+|+..|.+++..+|.+..+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (234)
T TIGR02521 95 NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL 173 (234)
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH
Confidence 467788899999999999999999999999998511 3556778999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
.+|.+++.+|++.+|+..|++++.+.|.+......+..+....
T Consensus 174 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (234)
T TIGR02521 174 ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL 216 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888877777666665443
No 32
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.2e-11 Score=111.75 Aligned_cols=113 Identities=24% Similarity=0.387 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR 84 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l 84 (281)
.|..+++.|+.+|+.++|..|+.+|+..|..--.++ .++.+|+|||.|.+.+|+|..||.+|.+++.++|.+.+++++-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 577889999999999999999999999998744343 5689999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491 85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l 118 (281)
|.|++.+..+..|+.+++..+.++-....+..+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~ 193 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAKKAIELR 193 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 9999999999999999999998876665554443
No 33
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.27 E-value=1.4e-10 Score=102.23 Aligned_cols=118 Identities=21% Similarity=0.249 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---H
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG---A 80 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~---a 80 (281)
+..+..++..|..++..|+|..|+..|.+++...+.++....+++.+|.+|+.+|+++.|+..|.++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4578899999999999999999999999999984433344578899999999999999999999999999998776 7
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491 81 LMLRAQTLVTL--------KEYNSALFDVNRLIELNPSSEVYQNLQARL 121 (281)
Q Consensus 81 ~~~lg~a~~~~--------g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l 121 (281)
++.+|.+++.. |++..|+..|++++..+|++..+...+..+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~ 158 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM 158 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence 99999999987 889999999999999999987665555433
No 34
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.26 E-value=3.6e-11 Score=86.13 Aligned_cols=67 Identities=24% Similarity=0.446 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcC
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-DFKKAAEECTSVLELDY 75 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg-~y~~Ai~~~~~al~i~p 75 (281)
++..++.+|.+++..|+|.+|+.+|+++|.+ +|.++.+++++|.||+++| ++.+|+.+|.++|+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 7889999999999999999999999999999 9999999999999999999 79999999999999987
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.26 E-value=1.4e-10 Score=118.10 Aligned_cols=120 Identities=13% Similarity=0.019 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
|.++.+++.+|......|.|++|..++..++.+ .|.+..++.+++.++.+++++++|+..+++++..+|+++.+++.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 456888888999999999999999999999988 88889999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+|.++.++|+|++|+..|++++..+|+++.++..++.+.+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G 202 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRG 202 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 9999999999999999999999888888888888888877654
No 36
>PRK15331 chaperone protein SicA; Provisional
Probab=99.25 E-value=1.3e-10 Score=97.82 Aligned_cols=120 Identities=17% Similarity=0.115 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
..+..+..|-.+|..|+|.+|...|+-...+ ++.+...++.+|.|+..+++|++|+..|..+..++++++..+|..|
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~---d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY---DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 4567788999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491 86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAP 129 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~ 129 (281)
.|++.+|+...|+.+|+.++. .|.+..++..-..+...+....
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~~~ 155 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKTAE 155 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHccc
Confidence 999999999999999999998 5777777776666666655443
No 37
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.24 E-value=3.7e-11 Score=89.89 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=73.3
Q ss_pred cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 023491 20 DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALF 99 (281)
Q Consensus 20 ~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~ 99 (281)
+|+|..|+.+|.+++...+.++ +..+++++|.||+++|+|.+|+..+.+ +.+++.+..+++.+|.|++.+|+|++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 6899999999999999943322 677888899999999999999999999 88889899999999999999999999999
Q ss_pred HHHHH
Q 023491 100 DVNRL 104 (281)
Q Consensus 100 ~~ekA 104 (281)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 38
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4e-11 Score=105.85 Aligned_cols=99 Identities=27% Similarity=0.453 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
.+..+.+.|+.+|..+.|..|+.+|.++|.+ +|..+..|.|++.||+++++++.+..+|.+++++.|+.++++|.+|
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 4677889999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 023491 86 QTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~l 107 (281)
+++..+..|.+|+..+++|..+
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999776
No 39
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.22 E-value=5.1e-10 Score=94.24 Aligned_cols=107 Identities=20% Similarity=0.066 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
.+..++..|.+++..|+|++|+..|.+++.+.+.....+.+++++|.++.++|++++|+..|.+++.++|.+..+++++|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 36677899999999999999999999999883322234678999999999999999999999999999999999999999
Q ss_pred HHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 023491 86 QTLV-------TLKEYN-------SALFDVNRLIELNPSSE 112 (281)
Q Consensus 86 ~a~~-------~~g~~~-------eAl~~~ekAL~ldP~~~ 112 (281)
.++. .+|++. +|+..|++++.++|.+.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999 777766 66666677888888654
No 40
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.22 E-value=3.2e-10 Score=93.37 Aligned_cols=115 Identities=20% Similarity=0.268 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HH
Q 023491 5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG---AL 81 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~---a~ 81 (281)
..+..++..|..++..|+|..|+..|+......|..+....+.+.+|.+|++.++|..|+..+++-|+++|.|+. ++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 478899999999999999999999999999998888888999999999999999999999999999999999875 89
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491 82 MLRAQTLVTLKE---------------YNSALFDVNRLIELNPSSEVYQNLQA 119 (281)
Q Consensus 82 ~~lg~a~~~~g~---------------~~eAl~~~ekAL~ldP~~~~a~~~l~ 119 (281)
|.+|.+++.... ...|+..|++++..-|++.-+.....
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~ 140 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARK 140 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 999999999877 89999999999999999887765544
No 41
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.21 E-value=6.8e-10 Score=100.89 Aligned_cols=117 Identities=13% Similarity=0.031 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHH
Q 023491 6 APANKIERAHQL-YRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGAL 81 (281)
Q Consensus 6 ~a~~l~~~G~~~-~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~ 81 (281)
+....+..|..+ +..|+|.+|+..|...+...|..+....+++.+|.+|+..|+|+.|+..|..++...|++ +.++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 357788888887 668999999999999999955444457899999999999999999999999999998874 6799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~ 122 (281)
+.+|.++..+|++..|+..|+++++..|+...+.....+|.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~ 261 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLN 261 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHh
Confidence 99999999999999999999999999999998877766653
No 42
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.21 E-value=1.6e-10 Score=95.50 Aligned_cols=96 Identities=16% Similarity=0.061 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 27 LGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 27 l~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ 106 (281)
..+|.+++.+ +|.. ++++|.+++++|+|++|+..|.+++.++|.+..+|+.+|.++..+|++++|+..|++++.
T Consensus 13 ~~~~~~al~~---~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV---DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc---CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3578899998 7664 678999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcC
Q 023491 107 LNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 107 ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
++|++..++..++.+...++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCH
Confidence 9999999999999988776543
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.21 E-value=4.6e-10 Score=118.25 Aligned_cols=119 Identities=19% Similarity=0.112 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
|.+...+...+...+..|++++|+.+|.+++.+ +|. ..+++++|.++.++|++++|+..|.+++.++|+++.++++
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~n 648 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA 648 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 444445555555666669999999999999998 885 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+|.++..+|++++|+..|+++++++|++..++.+++.+...++
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999988887776554
No 44
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.19 E-value=7.1e-10 Score=112.68 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEE----ALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG 79 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~e----Al~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~ 79 (281)
|.++..++.+|..++..|++.+ |+..|.+++.+ +|.+..++.++|.+++.+|++++|+..|++++.++|+++.
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 4555555556666666666553 55566666665 5555566666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023491 80 ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEV 113 (281)
Q Consensus 80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~ 113 (281)
+++++|.++..+|++++|+..|++++..+|.+..
T Consensus 320 a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 320 VRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 6666666666666666666666666666555543
No 45
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.18 E-value=1e-10 Score=82.98 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023491 48 SNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE 112 (281)
Q Consensus 48 ~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~ 112 (281)
+.+|..+++.|+|++|+..|+.+++.+|.++.+++.+|.++..+|++.+|+..|++++.++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45888999999999999999999999999999999999999999999999999999999999875
No 46
>PLN02789 farnesyltranstransferase
Probab=99.17 E-value=8.3e-10 Score=103.04 Aligned_cols=120 Identities=21% Similarity=0.101 Sum_probs=112.9
Q ss_pred CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCCCHH
Q 023491 3 SPAAPANKIERAHQLYRDG-RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDF--KKAAEECTSVLELDYNHTG 79 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~g-dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y--~~Ai~~~~~al~i~p~~~~ 79 (281)
+|.+..++..+|.++...| .+.+|+..+.+++.. +|.+..+|++|+.++.++|.. ..++.++.++|+++|++..
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~---npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~ 143 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED---NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH 143 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence 6889999999999999998 689999999999999 999999999999999999974 7889999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 80 ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
+|..+|.++..+|+|++|++++.++|+++|.|..++..+..+...+
T Consensus 144 AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 144 AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998886654
No 47
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.17 E-value=3.5e-11 Score=115.05 Aligned_cols=119 Identities=21% Similarity=0.326 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
.+..+..+|+.+|..++|+.|+.+|++||.+ +|+++.++.+|+.++++.++|..|+.++.+||+++|...++|+++|
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg 79 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRG 79 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeecc
Confidence 4567889999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491 86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL 127 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~ 127 (281)
.+...++++.+|+..|+....+.|+.+.+...+..+......
T Consensus 80 ~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 80 TAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887664
No 48
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.16 E-value=8.6e-10 Score=96.09 Aligned_cols=105 Identities=13% Similarity=0.051 Sum_probs=96.4
Q ss_pred cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCC--HHH
Q 023491 20 DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL-VTLKE--YNS 96 (281)
Q Consensus 20 ~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~-~~~g~--~~e 96 (281)
.++..+++..|.+++.. +|.+..+|+.+|.+|+.+|+++.|+..|.++++++|+++.+++.+|.++ ...|+ +.+
T Consensus 52 ~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 45668889999999998 9999999999999999999999999999999999999999999999986 67788 599
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491 97 ALFDVNRLIELNPSSEVYQNLQARLKTQLSL 127 (281)
Q Consensus 97 Al~~~ekAL~ldP~~~~a~~~l~~l~~~l~~ 127 (281)
|+..|+++++++|++..++.+++.+...++.
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~ 159 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQAD 159 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Confidence 9999999999999999999999888766543
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.13 E-value=3.9e-10 Score=102.33 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=104.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
+.++..+...|.++.+.|++++|+.+|.+++.. +|.+..+...++.++...|+++++...+.......|.++..+..
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDA 219 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHH
Confidence 568889999999999999999999999999999 99999999999999999999999999998888888888889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCC
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPI 130 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~~ 130 (281)
+|.++..+|++++|+..|++++..+|+++.+...++.+....+....
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred HHHHhcccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999988877765543
No 50
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.13 E-value=1.7e-09 Score=96.60 Aligned_cols=126 Identities=14% Similarity=0.039 Sum_probs=117.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL 81 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~ 81 (281)
.+|.+...+..+|..++..|+|..|+..+.++..+ .|.+..+|.-+|.+|.++|+++.|...|.+++++.+..+.++
T Consensus 95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhh
Confidence 35677778888999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCC
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPI 130 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~~ 130 (281)
-|+|..|+-.|+++.|...+..+...-+.+..+..++..+.........
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999999999999988899999999998877765543
No 51
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=2.8e-10 Score=110.55 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491 5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR 84 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l 84 (281)
-++++...+|..|+-.|+|+.|+.+|+.||.. .|.+..+|+.+|.++-.-.+..+||..|.+|+++.|.+.++.|+|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v---~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV---KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc---CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh
Confidence 57888999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 85 AQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
|.+++.+|.|.+|+.+|-.||.+.+.
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999765
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.8e-09 Score=102.99 Aligned_cols=125 Identities=15% Similarity=0.060 Sum_probs=105.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
||....+|.-.|+.+..++.-..|+..|.+|+.+ +|.+..+||.+|.+|--++...=|+-+|++|+...|.+.+.|-
T Consensus 360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~ 436 (559)
T KOG1155|consen 360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI---NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWV 436 (559)
T ss_pred CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc---CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHH
Confidence 5777788888888888888888888888888888 8888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCC
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPI 130 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~~ 130 (281)
.||.||.++++.++|+++|.+|+.+.-.+..+...++.+...+.....
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 888888888888888888888888887777888888888777765543
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=6.7e-10 Score=109.37 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
|.+=.+|+-.|.+|++.++|+.|.-+|.+|+.+ +|.+......+|..+.++|+.++|+..|++|+.++|.++-+-|.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I---NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI---NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcC---CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 445567778888888888888888888888887 88888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
+|.+++.+++|.+|+..++++-++-|++..+..+++++.+.++..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 888888888888888888888888888888888888887776644
No 54
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.10 E-value=3.2e-09 Score=93.46 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhcCCCH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL--------HDFKKAAEECTSVLELDYNHT 78 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl--------g~y~~Ai~~~~~al~i~p~~~ 78 (281)
..+++..|.+++..|++.+|+..|.+++...|.++....+++.+|.+++++ |++.+|+..|.+++..+|.+.
T Consensus 70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 367899999999999999999999999999554444455899999999987 899999999999999999986
Q ss_pred HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhcC
Q 023491 79 GAL-----------------MLRAQTLVTLKEYNSALFDVNRLIELNPSS---EVYQNLQARLKTQLSLA 128 (281)
Q Consensus 79 ~a~-----------------~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~---~~a~~~l~~l~~~l~~~ 128 (281)
.++ +.+|.+++.+|++..|+..|++++...|+. ..++..++.+...++..
T Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 432 467889999999999999999999998764 46777777777766544
No 55
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.10 E-value=1.4e-09 Score=87.49 Aligned_cols=97 Identities=14% Similarity=0.053 Sum_probs=91.1
Q ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 28 GFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 28 ~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
.+|.+++.. +|.+..+.+.+|.+++..|++.+|+..++.++.++|.++.+++++|.+++.+|++..|+..|++++.+
T Consensus 4 ~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 4 ATLKDLLGL---DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hhHHHHHcC---ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468889998 89899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc
Q 023491 108 NPSSEVYQNLQARLKTQLSL 127 (281)
Q Consensus 108 dP~~~~a~~~l~~l~~~l~~ 127 (281)
+|.+...+.+++.+....+.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred CCCChHHHHHHHHHHHHcCC
Confidence 99999999999988877643
No 56
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3e-09 Score=96.86 Aligned_cols=120 Identities=21% Similarity=0.149 Sum_probs=108.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCH
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH---DFKKAAEECTSVLELDYNHT 78 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg---~y~~Ai~~~~~al~i~p~~~ 78 (281)
+||.+++-|..+|..|+..|++..|+..|.+|+++ .+.++..+..+|.+++... ...++...+.+++..+|.+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i 227 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI 227 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH
Confidence 68999999999999999999999999999999999 9999999999998887644 57789999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
+++++||..++..|+|.+|+..++..|.+.|.+..-+..+++....
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999876655555544433
No 57
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.10 E-value=3.4e-09 Score=109.45 Aligned_cols=118 Identities=10% Similarity=0.082 Sum_probs=111.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
.|..+..+...|..+...|++.+|+.+|.+++.. .|.+..+++.+|.++...|++.+|+..+.+++...|+++. ++
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~ 120 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL---EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LL 120 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HH
Confidence 4678888999999999999999999999999999 9999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
.+|.++...|++.+|+..|++++.+.|++..+...++.+...
T Consensus 121 ~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 121 ALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887776543
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=2.6e-09 Score=94.04 Aligned_cols=115 Identities=18% Similarity=0.111 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ 86 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~ 86 (281)
+.+.+++|..|+..|++..|...+++||.. +|....+|..||.+|.++|+.+.|-+.|++|+.++|++..++-|.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 567788899999999999999999999998 99999999999999999999999999999999999988888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Q 023491 87 TLVTLKEYNSALFDVNRLIEL--NPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 87 a~~~~g~~~eAl~~~ekAL~l--dP~~~~a~~~l~~l~~~ 124 (281)
.+|..|++++|.+.|++|+.. -|.-.....+++.|.-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~ 151 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK 151 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh
Confidence 888888888888888888763 22344555566555443
No 59
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.09 E-value=2.9e-09 Score=108.19 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=105.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL 81 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~ 81 (281)
+.|.++..+...|.+.+..|+++.|+..|++++.. +|.++.++..+|.+++..|++++|+..|.+++.++|++..++
T Consensus 71 ~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~ 147 (656)
T PRK15174 71 TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV---NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIF 147 (656)
T ss_pred hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 36888999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l 118 (281)
+.+|.++..+|++++|+..|++++.+.|++..+..++
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~ 184 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC 184 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999999999999988776554
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=2e-09 Score=94.73 Aligned_cols=119 Identities=19% Similarity=0.122 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL--DYNHTGA 80 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i--~p~~~~a 80 (281)
+|.+..++..+|..|...|+.+.|-+.|++||.+ +|.+..+++|.|..++.+|+|++|...|++|+.. .+..+..
T Consensus 65 DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t 141 (250)
T COG3063 65 DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDT 141 (250)
T ss_pred CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchh
Confidence 6788888888898899999999999999999998 8888889999998888899999999999888763 2355678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
|-|+|.|.+++|++..|...|+++|+++|+++.....+..+...
T Consensus 142 ~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 142 LENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred hhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 88999999999999999999999999999888777666665544
No 61
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.08 E-value=2.8e-09 Score=114.56 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=103.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccH--------------HHHHHHHHHHHHcCCHHHHHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKI--------------ALHSNRAACYLKLHDFKKAAEECT 68 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~--------------~a~~nra~~~~klg~y~~Ai~~~~ 68 (281)
+|.++..+..+|.++++.|++++|+.+|.+++.. .|... .+...+|.++++.|++++|+..|.
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~---~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALAL---DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6889999999999999999999999999999998 44332 123466888999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491 69 SVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122 (281)
Q Consensus 69 ~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~ 122 (281)
+++.++|.+..+++.+|.++...|++++|+..|+++++++|++..+...+..+.
T Consensus 376 ~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 376 QARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887776664
No 62
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.08 E-value=3.7e-09 Score=107.05 Aligned_cols=120 Identities=20% Similarity=0.201 Sum_probs=101.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
.|.+...+...|..+...|++.+|+..|.+++.. .|.+..++.++|.++...|+ .+|+..+.+++.+.|+++..+.
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK---APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence 4677888888888888888888888888888887 78888888888888888888 7788888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
.+|.+++.+|++++|+..|+++++++|.++.+...++.+....+
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 88888888899999999999999988888888888777765543
No 63
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.08 E-value=2.9e-09 Score=95.90 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---GALM 82 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---~a~~ 82 (281)
++..+++.|..+++.|+|..|...|...|...|..+..+.++|.||.++|.+|+|..|...|..+++-.|+++ +++|
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 3455899999999999999999999999999888888999999999999999999999999999999988764 6899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~ 122 (281)
.+|.++..+|+.+.|...|+++++.-|+.+.+......++
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~ 259 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALK 259 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999998887776664
No 64
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.5e-09 Score=103.49 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=106.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 023491 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLK 92 (281)
Q Consensus 13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g 92 (281)
-|+-|-..++.+.|+.+|++||++ +|....+|.-+|+=|+.+++...|+..|++|+.++|.+.++||.+|++|.-++
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkL---Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKL---NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhc---CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 466677788999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491 93 EYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 93 ~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
-..=|+.+|++|+.+.|.++.++..++.+..++...
T Consensus 413 Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 999999999999999999999999999999877543
No 65
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.06 E-value=4.1e-09 Score=106.72 Aligned_cols=118 Identities=22% Similarity=0.213 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
+..+..+...|.+++..|+|++|+..|.+++.. +|....+++.+|.+++..|++.+|+..+.+++..+|.+..+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAI---DPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLL 198 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 456778889999999999999999999999998 88888999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
+|.++...|+++.|+..|++++.++|.+..++..+..+...
T Consensus 199 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 239 (899)
T TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIE 239 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887777666544
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.8e-09 Score=104.89 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=108.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT 78 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~ 78 (281)
.|.++-.+.+.|..+|..+.|.+|+.+|..++..++ ..+.-...+.|+|+++.+++.|.+||..|+++|.+.|.++
T Consensus 410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA 489 (611)
T ss_pred CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence 488999999999999999999999999999995443 1112345689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
.+|-.+|.+|..+|+++.|+..|.++|.++|++..+..++..+-..
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888888765443
No 67
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.03 E-value=6.1e-09 Score=90.85 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHH
Q 023491 5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---GAL 81 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---~a~ 81 (281)
.++..++..|..++..|+|.+|+..|+.++...|..+....+.+.+|.++++.|+|..|+..|...++..|.+. .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 46889999999999999999999999999999888888899999999999999999999999999999999876 589
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhh
Q 023491 82 MLRAQTLVTLK-----------EYNSALFDVNRLIELNPSSEVY---QNLQARLKTQLS 126 (281)
Q Consensus 82 ~~lg~a~~~~g-----------~~~eAl~~~ekAL~ldP~~~~a---~~~l~~l~~~l~ 126 (281)
|.+|.+++.+. ....|+..|+.++...|+.+-+ ...+..|+..+.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence 99999987753 3468999999999999997544 444555555544
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.03 E-value=7.7e-09 Score=105.42 Aligned_cols=119 Identities=10% Similarity=-0.059 Sum_probs=107.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
.|+++.++...|.++++.+++++|+..+++++.. +|.++.+++.+|.++.++|+|++|+..|++++.-+|++..++.
T Consensus 116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~ 192 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV 192 (694)
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence 4899999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPS-SEVYQNLQARLKTQ 124 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~-~~~a~~~l~~l~~~ 124 (281)
.+|.++..+|+.++|...|++|+.+... ...+-..+..+...
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 235 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNAD 235 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999998644 43334444444433
No 69
>PLN02789 farnesyltranstransferase
Probab=99.02 E-value=6.5e-09 Score=97.03 Aligned_cols=120 Identities=20% Similarity=0.139 Sum_probs=109.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 023491 2 ASPAAPANKIERAHQLYRDGRY--EEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG 79 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy--~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~ 79 (281)
.+|.+.+++..+|.++.+.|.+ ..++.++.++|.. +|.+..+|.+|+.++..+|.|++|+.+|.++|++++.+..
T Consensus 101 ~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 101 DNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence 3788999999999999888874 7889999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc---CCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 80 ALMLRAQTLVTL---KEY----NSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 80 a~~~lg~a~~~~---g~~----~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
+|+.+|.++..+ |.+ ++++.+..++|.++|+|..++..+..+...
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 999999999887 333 578899999999999999999998888754
No 70
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.01 E-value=1e-08 Score=110.27 Aligned_cols=116 Identities=16% Similarity=0.070 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHH--------------------------------
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNR-------------------------------- 50 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nr-------------------------------- 50 (281)
+|.++.+++.+|.+++..|++++|+.+|.+++.+ +|.+..++.++
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5788889999999999999999999999999988 66655554443
Q ss_pred ----------HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491 51 ----------AACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR 120 (281)
Q Consensus 51 ----------a~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~ 120 (281)
|.+++..|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++.++|.++.+...++.
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al 537 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGL 537 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4445568999999999999999999999999999999999999999999999999999999887766554
Q ss_pred H
Q 023491 121 L 121 (281)
Q Consensus 121 l 121 (281)
+
T Consensus 538 ~ 538 (1157)
T PRK11447 538 Y 538 (1157)
T ss_pred H
Confidence 4
No 71
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.00 E-value=2.9e-09 Score=76.92 Aligned_cols=71 Identities=34% Similarity=0.478 Sum_probs=63.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491 51 AACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL 121 (281)
Q Consensus 51 a~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l 121 (281)
..+|++.++|..|+..+++++.++|.++..++.+|.+++.+|++.+|+.+|++++++.|++..+...++.|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 56788999999999999999999999999999999999999999999999999999999988887766544
No 72
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.99 E-value=2.8e-09 Score=75.47 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 023491 11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT 78 (281)
Q Consensus 11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~ 78 (281)
+.+|..++..|+|++|+.+|.+++.. .|.+..+++.+|.|++.+|++++|+..|++++.++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999 999999999999999999999999999999999999875
No 73
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=3.1e-09 Score=101.94 Aligned_cols=105 Identities=18% Similarity=0.257 Sum_probs=99.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
+|.++..++++|...|..++|++|+.-|++++.+ +|.++-+|..+|.+.|+++.+..+...|+.+++..|+.+++|-
T Consensus 390 dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L---~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~ 466 (606)
T KOG0547|consen 390 DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL---DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYN 466 (606)
T ss_pred CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc---ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 6889999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
..|.++...++|..|++.|..|++|.|.
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999988
No 74
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.98 E-value=2.1e-08 Score=94.21 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCccc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQK-----IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT 78 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~-----~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~ 78 (281)
|.+...+..++..+...|+|++|+..|..++.. .+.. ..++.++|.++++.|++++|+..|.++++++|.+.
T Consensus 138 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 138 DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL---GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV 214 (389)
T ss_pred cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence 445555666666666666666666666666665 3221 33456677777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491 79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSS 111 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~ 111 (281)
.+++.+|.++...|++.+|+..|++++..+|.+
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 777777777777777777777777777777654
No 75
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.96 E-value=2.5e-08 Score=89.60 Aligned_cols=122 Identities=20% Similarity=0.234 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHH
Q 023491 5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---GAL 81 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---~a~ 81 (281)
.++..++..|..++..|+|.+|+..|..++...|..+....+.+.+|.+|+++++|..|+..|++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 47888999999999999999999999999999554445556679999999999999999999999999999875 489
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhh
Q 023491 82 MLRAQTLVTLKE------------------YNSALFDVNRLIELNPSSEV---YQNLQARLKTQLS 126 (281)
Q Consensus 82 ~~lg~a~~~~g~------------------~~eAl~~~ekAL~ldP~~~~---a~~~l~~l~~~l~ 126 (281)
|.+|.++..++. ...|+..|++.++..|+..- ++..+..|+..+.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 999998766541 36789999999999999754 4444455555554
No 76
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.95 E-value=8.2e-09 Score=105.32 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=115.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH-TGAL 81 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~-~~a~ 81 (281)
++.|+.++..+++-+|-.|+|..+..++..++......+..+..+|.+|.+|+.+|+|++|..+|..++..++++ .-++
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 678999999999999999999999999999999865566778889999999999999999999999999999988 7899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+.+|++++..|+++.|+.+|+++++..|++......++.+.....
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 999999999999999999999999999999999999998887764
No 77
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.94 E-value=2.9e-08 Score=93.20 Aligned_cols=115 Identities=12% Similarity=0.082 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT-----GALM 82 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~-----~a~~ 82 (281)
..+...|..++..|+++.|+..|.+++.. .+....++..++.++.+.|++++|+..+..++...|.+. ..++
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 184 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYC 184 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 34555666666666666666666666665 566666777777777777777777777777776665542 2455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
.+|.++...|++.+|+..|+++++++|++..+...++.+....
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC
Confidence 6777777778888888888888877777776666666655543
No 78
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.92 E-value=9.9e-09 Score=84.54 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ 86 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~ 86 (281)
..+.+..|..++..|+|++|+..|..++...+.......+.+++|.+++.+|+|++|+..+..+ .-.+-.+.++..+|.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGD 126 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHH
Confidence 5666777888888888888888888888763222334567777888888888888888887552 223334556777788
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 023491 87 TLVTLKEYNSALFDVNRLI 105 (281)
Q Consensus 87 a~~~~g~~~eAl~~~ekAL 105 (281)
+|...|++++|+..|++||
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 8888888888888887764
No 79
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.91 E-value=3.3e-08 Score=102.19 Aligned_cols=112 Identities=13% Similarity=-0.020 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ 86 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~ 86 (281)
...+..+|..+...|++++|+.+|.+++.. .|.+..+++++|.++...|++++|+..|++++.++|++..+++.+|.
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~ 435 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 456778999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491 87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL 121 (281)
Q Consensus 87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l 121 (281)
++..+|+|+.|+..+++++...|+++.+..+....
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999887755443
No 80
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.91 E-value=4.7e-09 Score=74.75 Aligned_cols=67 Identities=28% Similarity=0.385 Sum_probs=51.1
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491 55 LKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL 121 (281)
Q Consensus 55 ~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l 121 (281)
++.|+|++|+..|.+++..+|++..+++.+|.+|+..|++++|...+++++..+|+++.++.+++.|
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5677788888888888888888888888888888888888888888888888888777777666543
No 81
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.88 E-value=2e-08 Score=95.04 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=82.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
+|.++..++.+|.+++..|+|.+|+..|.++|.+ +|..+.+|+++|.+|+.+|+|+.|+..|++++.++|++..+..
T Consensus 32 ~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 32 DPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6889999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 023491 83 LRAQTLVTLK 92 (281)
Q Consensus 83 ~lg~a~~~~g 92 (281)
.++.|..++.
T Consensus 109 ~l~~~~~kl~ 118 (356)
T PLN03088 109 LIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHH
Confidence 9988876663
No 82
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.88 E-value=4.9e-08 Score=78.60 Aligned_cols=99 Identities=20% Similarity=0.098 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN---HTGALMLR 84 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~---~~~a~~~l 84 (281)
.++++.|.++-..|+..+|+.+|.+++......+....++.++|.++..+|++++|+..++.++.-.|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999974445556789999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 023491 85 AQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekAL~ 106 (281)
+.+++.+|++++|+..+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 83
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=8.1e-09 Score=98.47 Aligned_cols=117 Identities=18% Similarity=0.141 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491 5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR 84 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l 84 (281)
-++.++.++|+..|.+|+|+.|+..|..+|.. +..+..++||+|..+-.+|++++|+.+|-++-.+--+++++++.+
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~n---dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi 564 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNN---DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI 564 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcC---chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 47788999999999999999999999999997 889999999999999999999999999999877777899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
+++|..+.+-..|+++|.++..+-|+++.+..-++.+...
T Consensus 565 aniye~led~aqaie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 9999999999999999999999999999988888777654
No 84
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.87 E-value=2.9e-08 Score=83.16 Aligned_cols=88 Identities=11% Similarity=0.028 Sum_probs=82.5
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491 41 QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR 120 (281)
Q Consensus 41 p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~ 120 (281)
+......|.+|..++..|++++|+..|+.++.++|.+...||+||.|+..+|+|.+|+..|.+|+.++|+++....+.+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 66778889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcC
Q 023491 121 LKTQLSLA 128 (281)
Q Consensus 121 l~~~l~~~ 128 (281)
+.-.++..
T Consensus 112 c~L~lG~~ 119 (157)
T PRK15363 112 CYLACDNV 119 (157)
T ss_pred HHHHcCCH
Confidence 88776544
No 85
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.87 E-value=1.2e-09 Score=100.88 Aligned_cols=110 Identities=19% Similarity=0.321 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT 87 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a 87 (281)
...+-.+..++..|.++.|+++|+.+|.+ +|..+.+|.+|+.+++++++...|+.+|..+|.++|+....|-.+|.+
T Consensus 115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~l---np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 115 NDKKVQASEALNDGEFDTAIELFTSAIEL---NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYA 191 (377)
T ss_pred HHHHHHHHHHhcCcchhhhhccccccccc---CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHH
Confidence 34566788999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491 88 LVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL 121 (281)
Q Consensus 88 ~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l 121 (281)
+..+|.|.+|..+|..+++++-+.. +-.++..+
T Consensus 192 ~rllg~~e~aa~dl~~a~kld~dE~-~~a~lKeV 224 (377)
T KOG1308|consen 192 ERLLGNWEEAAHDLALACKLDYDEA-NSATLKEV 224 (377)
T ss_pred HHHhhchHHHHHHHHHHHhccccHH-HHHHHHHh
Confidence 9999999999999999999985544 33333333
No 86
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.82 E-value=6.8e-08 Score=86.38 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=109.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL 81 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~ 81 (281)
.+|.+..+ ...+..++..|+-+.++....+++.. ++.+..+..-+|...++.|+|..|+..+.++.++.|+++++|
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~---~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~ 137 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA---YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAW 137 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc---CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhh
Confidence 36778888 88899999999999999888887776 888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
..+|.+|.+.|++..|...|.+++++.|+++.+..+++-.....
T Consensus 138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 138 NLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred hHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence 99999999999999999999999999999999999988766543
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.81 E-value=3.6e-08 Score=98.73 Aligned_cols=107 Identities=21% Similarity=0.177 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhcCCCHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAE--ECTSVLELDYNHTGAL 81 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~--~~~~al~i~p~~~~a~ 81 (281)
|..+..++..|..+...|.+.+|...|..|+.+ +|.+......+|.++++.|+-.-|.. .+..+++++|.++++|
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l---dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL---DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 567788999999999999999999999999999 99999999999999999998877777 9999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEV 113 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~ 113 (281)
|++|.++..+|+...|..+|..|+++.+.++.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999988764
No 88
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.81 E-value=2.2e-08 Score=96.19 Aligned_cols=69 Identities=23% Similarity=0.287 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIA---LHSNRAACYLKLHDFKKAAEECTSVLEL 73 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~---a~~nra~~~~klg~y~~Ai~~~~~al~i 73 (281)
++|.++..++++|..++..|+|++|+.+|+++|.+ +|.+.. +|+|+|.||.++|++++|+.+|.++|++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777777777777777777777777777777777 666653 4777777777777777777777777776
No 89
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.80 E-value=1.4e-07 Score=95.82 Aligned_cols=116 Identities=19% Similarity=0.122 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ 86 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~ 86 (281)
++.++..|+.+|..|++.+|...+..+|+. +|..+.+|+.+|.+|-++|+..+|+.....|-.++|.+...|..+|.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq---dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ---DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 567788899999999999999999999998 99999999999999999999999988888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
...++|.+..|.-+|.+||+++|.+-........|.+..
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~ 254 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT 254 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 888888899998899999988888776666655555543
No 90
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.4e-08 Score=95.83 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=106.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK---------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL 73 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i 73 (281)
++.++.+++.+|.+++-..+.+.|+.+|.++|.+.| ..+.....+..+|.-.++.|.|..|.+.|+.+|.+
T Consensus 199 d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 199 DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 466899999999999999999999999999999943 22234556778899999999999999999999999
Q ss_pred cCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 74 DYNHT----GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 74 ~p~~~----~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+|++. .+|+++|.++.++|+..+|+.+...|+.|+|.--.+....+.+...++
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 99764 689999999999999999999999999999876666666666555544
No 91
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.80 E-value=2e-08 Score=71.43 Aligned_cols=68 Identities=28% Similarity=0.383 Sum_probs=62.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491 17 LYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT 87 (281)
Q Consensus 17 ~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a 87 (281)
++..|+|.+|+.+|.+++.. +|.+..+++.+|.||++.|++++|...+.+++..+|+++..+..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 47889999999999999999 999999999999999999999999999999999999998888887764
No 92
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.77 E-value=1.7e-07 Score=97.27 Aligned_cols=113 Identities=11% Similarity=0.004 Sum_probs=80.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
.|..+...+..+...++.|+|..|+..|.+++.. +|....+.+.++.++...|++.+|+..|++++.-.+.....+.
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKA---GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 5778889999999999999999999999999998 7776433336666666667777777777777622333344444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l 118 (281)
.+|.++..+|+|..|+..|+++++++|+++.+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL 142 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM 142 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 446677777777777777777777777776665544
No 93
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.77 E-value=2.3e-07 Score=75.61 Aligned_cols=99 Identities=22% Similarity=0.234 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----HHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT----GALMLR 84 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~----~a~~~l 84 (281)
.+--+|..+-..|+.+.|++.|.++|.+ -|..+.+|+||+.++.-.|+-++|+.++.+++++..... .+|..+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 3445788888999999999999999999 899999999999999999999999999999999976544 479999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 85 AQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
|.+|..+|+-+.|..+|+.|-++...
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 99999999999999999999888654
No 94
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.76 E-value=2e-08 Score=73.53 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=48.2
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 41 QQKIALHSNRAACYLKLHDFKKAAEECTSVLELD----Y---NHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 41 p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~----p---~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
|..+.+++++|.+|+.+|+|++|+..|.+++.+. + ..+.+++++|.++..+|++++|+..|++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456677778888888888888888888777552 1 12457788888888888888888888887765
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=2.5e-07 Score=89.00 Aligned_cols=121 Identities=23% Similarity=0.198 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491 5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR 84 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l 84 (281)
.....++-.+...|..|.++.|...+...+.. .|.++.++..++.+++..++..+|++.+.+++.++|...-..+++
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 34556677777777777777777777777776 777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491 85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
|++|++.|++++|+..+.+.+.-+|+++..|.+++.....++..
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 77777777777777777777777777777777777776665543
No 96
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.76 E-value=8.5e-08 Score=80.68 Aligned_cols=112 Identities=12% Similarity=0.014 Sum_probs=93.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHH
Q 023491 14 AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALMLRAQTLVT 90 (281)
Q Consensus 14 G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~lg~a~~~ 90 (281)
.+.+|..+.|..+...+...+... .....+.+++++|.+++.+|+|++|+..|.+++.+.+++ +.+|+++|.++..
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTT-SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred ccccccccccccchhhhhHhccCC-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 456677778888888886665541 123347788999999999999999999999999997763 4589999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 91 LKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 91 ~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+|++++|+..|++++.++|........++.+...++
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999999999999999998888888887554
No 97
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.76 E-value=6e-08 Score=69.90 Aligned_cols=70 Identities=30% Similarity=0.425 Sum_probs=65.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491 14 AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ 86 (281)
Q Consensus 14 G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~ 86 (281)
...++..++|..|+.++++++.+ +|.++.+++.+|.|++++|+|.+|+.+|++++++.|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 46789999999999999999999 99999999999999999999999999999999999999988777664
No 98
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.76 E-value=1.2e-07 Score=67.95 Aligned_cols=81 Identities=27% Similarity=0.283 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 46 LHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 46 a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
+++++|.+++..|++.+|+..|..++...|.+..+++.+|.++...|+++.|+..|++++.+.|.+..+...++.+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999887777777665554
Q ss_pred h
Q 023491 126 S 126 (281)
Q Consensus 126 ~ 126 (281)
+
T Consensus 82 ~ 82 (100)
T cd00189 82 G 82 (100)
T ss_pred H
Confidence 3
No 99
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.2e-08 Score=94.16 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN---HTGA 80 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~---~~~a 80 (281)
|.+.++.-..|..||-.++.+-|+.+|.+.|.+ .-..+.+|+|+|.|.+-.++|+-++..|.+++..... -+.+
T Consensus 321 ~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm---G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 321 PINVEAIACIAVGYFYDNNPEMALRYYRRILQM---GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred CccceeeeeeeeccccCCChHHHHHHHHHHHHh---cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence 334444444455566666677777777777776 7788999999999999999999999999999987652 4568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
||++|.+....|++..|..+|+-||.-++++.++.++++.++..-
T Consensus 398 WYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred hhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 999999999999999999999999999999999999999887553
No 100
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=3.2e-07 Score=81.99 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
|.+..+.+..|..+-..|.|++|+++|+..|.- +|.+...|-..-.+..-+|+--.||+.+..-+...+.+.++|..
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~e 159 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHE 159 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHH
Confidence 567777888899999999999999999998886 77777777766666666777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
++.+|+.+|+|+.|..+|+.++-+.|.++.....++.++.-++
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 7777777777777777777777777777776666666655544
No 101
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=4.1e-07 Score=87.52 Aligned_cols=123 Identities=22% Similarity=0.119 Sum_probs=114.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL 81 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~ 81 (281)
+.|.|+..+-..+..++..++..+|++.|.+++.+ +|....+..++|.+|++.|++.+|+..+...+.-+|+++..|
T Consensus 335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w 411 (484)
T COG4783 335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGW 411 (484)
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHH
Confidence 35889988899999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL 127 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~ 127 (281)
..||.+|..+|+..+|...+-..+.+.-....+...+.+.++..+.
T Consensus 412 ~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 412 DLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999998888888877777776643
No 102
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.72 E-value=1.5e-07 Score=80.31 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 023491 23 YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD----------FKKAAEECTSVLELDYNHTGALMLRAQTLVTLK 92 (281)
Q Consensus 23 y~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~----------y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g 92 (281)
|+.|.+.|...+.. +|.++..+++-|.+++.+.+ +++|+.=|+.||.++|+...+++++|++|..++
T Consensus 7 FE~ark~aea~y~~---nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAK---NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 56788888888888 99999999999999988754 567888899999999999999999999999876
Q ss_pred C-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 93 E-----------YNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 93 ~-----------~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
. |+.|..+|++|+.++|+|..++..+....+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 5 8999999999999999999999988877654
No 103
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.71 E-value=2.1e-07 Score=89.56 Aligned_cols=69 Identities=16% Similarity=0.017 Sum_probs=66.6
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 39 IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA---LMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 39 ~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a---~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
.+|.++.+++|+|.+|+++|+|++|+..|+++|+++|++..+ ||++|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999999999865 999999999999999999999999997
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.71 E-value=2.4e-07 Score=86.06 Aligned_cols=104 Identities=16% Similarity=-0.009 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---- 78 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---- 78 (281)
+|.....+...|..+...|++.+|+..|.+++.+ .|.+..++..+|.+++..|++++|+..+.+++...|...
T Consensus 110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~ 186 (355)
T cd05804 110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL---NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRG 186 (355)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhH
Confidence 4566677778899999999999999999999999 888899999999999999999999999999999876432
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491 79 GALMLRAQTLVTLKEYNSALFDVNRLIELNP 109 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP 109 (281)
..|+.+|.++...|++++|+..|++++...|
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 3577899999999999999999999987776
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=1.1e-07 Score=92.76 Aligned_cols=120 Identities=15% Similarity=0.081 Sum_probs=98.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--------------------------------------cCc--c
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK--------------------------------------IKQ--Q 42 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--------------------------------------~~p--~ 42 (281)
+|.|..++..+|..|...|.-.+|+.++.+.|...+ ..+ .
T Consensus 349 dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~ 428 (579)
T KOG1125|consen 349 DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI 428 (579)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 466777777777777777777777777666654421 233 6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491 43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122 (281)
Q Consensus 43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~ 122 (281)
++.++..||.+|+-.|+|++|+.+|+.||..+|++...|-+||.++..-.+..+|+..|++||+|.|+.-.++.+++...
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 78889999999999999999999999999999999999999999999999999999999999999999766666655443
No 106
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.68 E-value=2.4e-07 Score=78.38 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=79.6
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023491 40 KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN 116 (281)
Q Consensus 40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~ 116 (281)
.+..+.+++++|.+++..|++++|+..|.+++.+.++. ..+++++|.++..+|+++.|+..|++++.+.|.+.....
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 45678889999999999999999999999999987754 468999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhcC
Q 023491 117 LQARLKTQLSLA 128 (281)
Q Consensus 117 ~l~~l~~~l~~~ 128 (281)
.++.+...++..
T Consensus 111 ~lg~~~~~~g~~ 122 (172)
T PRK02603 111 NIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHcCCh
Confidence 888887666543
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=5.1e-08 Score=97.24 Aligned_cols=118 Identities=11% Similarity=0.090 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
++.+.+..|...+.+++|.+|..+|+..+.+ +|.....||++|.|.++++++..|..+|.+.+.++|++..+|-+++
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~---nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls 560 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEI---NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLS 560 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhc---CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhh
Confidence 4556666777788889999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
.+|..+|+..+|...+.+|++.+-++-.++.+...+.....
T Consensus 561 ~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 561 TAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVG 601 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcc
Confidence 99999999999999999999999777777777666655443
No 108
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.66 E-value=4.3e-07 Score=70.42 Aligned_cols=82 Identities=15% Similarity=0.035 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 023491 44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS---EVYQNL 117 (281)
Q Consensus 44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~---~~a~~~ 117 (281)
+..++.+|..++..|++++|+..|..++..+|++ ..+++.+|.+++..|++..|+..|++++...|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3568899999999999999999999999999876 5799999999999999999999999999999986 456666
Q ss_pred HHHHHHHh
Q 023491 118 QARLKTQL 125 (281)
Q Consensus 118 l~~l~~~l 125 (281)
++.+...+
T Consensus 82 ~~~~~~~~ 89 (119)
T TIGR02795 82 LGMSLQEL 89 (119)
T ss_pred HHHHHHHh
Confidence 66665543
No 109
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.65 E-value=1.7e-07 Score=84.96 Aligned_cols=121 Identities=23% Similarity=0.253 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
++..+......++..+++.++...+..+.... ..+.++.+++.+|.++.+.|++++|+.+|.++++++|++..++..++
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34455566677788888888888888877541 13567888888999999999999999999999999999999888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491 86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL 127 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~ 127 (281)
.+++.+|++.++...+.......|.++.++..++.+...++.
T Consensus 188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-
T ss_pred HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc
Confidence 889888999888888888888877777777777777666543
No 110
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.64 E-value=1.3e-07 Score=96.72 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=108.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD--YNHTGA 80 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~--p~~~~a 80 (281)
+|.|.-+-.--|.++-..|++..|+..|.++... -...+.+|.|+|+||+.+|+|-.|++.|+.+++.. .++...
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa---~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA---TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHH---HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 4667767777888999999999999999999886 44578899999999999999999999999998765 367899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+..||.+++..|.|.+|..++.+|+.+.|.+..+..+++.+...+.
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888877654
No 111
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.63 E-value=8.6e-08 Score=70.16 Aligned_cols=71 Identities=27% Similarity=0.445 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD 74 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~ 74 (281)
|..+..+...|.+++..|+|++|+.+|.+++.+.. ..+..+.+++++|.|+..+|++++|+..+.+++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45577899999999999999999999999998853 234568899999999999999999999999998763
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.62 E-value=4.8e-07 Score=93.93 Aligned_cols=118 Identities=13% Similarity=-0.003 Sum_probs=106.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---- 78 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---- 78 (281)
+|.+..++..+...+...+++++|+.....++.. .|....+|+.+|.++++.+++..|.-. .++.+.+.+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 6788999999999999999999999999999998 999999999999999999998887666 6666665555
Q ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 79 ---------------GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 79 ---------------~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
.++|.+|.||-++|++.+|...|+++|+++|+|+.+.++++-.....
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999888776654
No 113
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=2e-07 Score=81.80 Aligned_cols=118 Identities=19% Similarity=0.109 Sum_probs=108.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
-+..++++|..|-..|-+..|.-.|++++.+ .|..+.+++.+|..+...|+|+.|.+.|..+++++|.+--++.++|
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai---~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhc---CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 3567888999888899999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
.+++--|+|.-|..++.+.-+-||+++--.-|+-.++..+.
T Consensus 141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~d 181 (297)
T COG4785 141 IALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLD 181 (297)
T ss_pred eeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCC
Confidence 99999999999999999999999999877777766665543
No 114
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.61 E-value=1.1e-06 Score=81.75 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT 87 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a 87 (281)
..+.++...++-.|++..|+...+..|.+ .|=++.+|-.|+.||...|+...||.++..+-++..++.+++|.++..
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L 232 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQL 232 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 34567778888899999999999999999 888999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491 88 LVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT 123 (281)
Q Consensus 88 ~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~ 123 (281)
++..|+.+.++...+.||+++|+..........+++
T Consensus 233 ~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 233 LYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence 999999999999999999999997654444444444
No 115
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.58 E-value=1.6e-06 Score=88.32 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=102.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL 81 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~ 81 (281)
++|.++.+++.+|.++-.+|+...|+..+..|..+ +|.+...|..++....++|++..|+-+|.+||+.+|.+.+..
T Consensus 168 qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL---~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~ 244 (895)
T KOG2076|consen 168 QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL---NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELI 244 (895)
T ss_pred hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHH
Confidence 57899999999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNP 109 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP 109 (281)
+.++.+|.++|++..|+..|.+++.++|
T Consensus 245 ~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 245 YERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999
No 116
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.56 E-value=2.2e-06 Score=74.68 Aligned_cols=122 Identities=23% Similarity=0.262 Sum_probs=100.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-----------DFKKAAEECTSVL 71 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg-----------~y~~Ai~~~~~al 71 (281)
+|....+.+..|.++|..|+|..|+..|.+.+...|.++....+++.+|.+++.+. ...+|+..|+.+|
T Consensus 38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999998888888899999999988754 3458999999999
Q ss_pred HhcCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 72 ELDYNHT-----------------GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 72 ~i~p~~~-----------------~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
...|++. .--+..|..|++.|.|..|+..|+.+++--|+...+...+..+...
T Consensus 118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 9999875 2356679999999999999999999999999987776665555443
No 117
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.54 E-value=2.1e-06 Score=89.30 Aligned_cols=121 Identities=14% Similarity=0.090 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
|.....+...|..+...|+|..|+.+|++++.. +|.++.+++.++.+|...+++.+|+..+.+++..+|.+... ..
T Consensus 99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~---dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~ 174 (822)
T PRK14574 99 NISSRGLASAARAYRNEKRWDQALALWQSSLKK---DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MT 174 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HH
Confidence 334555555678888899999999999999998 88888888888999999999999999999999999875444 55
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
++.++..++++.+|+..|++++.++|++..+...+..+...+...
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~ 219 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV 219 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 566666677777799999999999999998877776666655433
No 118
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=5.6e-07 Score=82.07 Aligned_cols=101 Identities=22% Similarity=0.174 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
+|.||--|-++|.+|.+.|.|..|++.-..+|.+ +|....+|..+|.+|+-+|+|.+|+..|.++|.++|++....-
T Consensus 111 ~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 111 DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHH
Confidence 5788888889999999999999999999999999 9999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHcCCHH---HHHHHHHHHHH
Q 023491 83 LRAQTLVTLKEYN---SALFDVNRLIE 106 (281)
Q Consensus 83 ~lg~a~~~~g~~~---eAl~~~ekAL~ 106 (281)
+|..+-..+++-. .+...++-+..
T Consensus 188 nL~~Ae~~l~e~~~~~~~~~~~d~~~~ 214 (304)
T KOG0553|consen 188 NLKIAEQKLNEPKSSAQASGSFDMAGL 214 (304)
T ss_pred HHHHHHHHhcCCCcccccccchhhhhh
Confidence 8888877776655 44444444333
No 119
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.52 E-value=1.6e-06 Score=86.03 Aligned_cols=110 Identities=10% Similarity=-0.014 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023491 3 SPAAPANKIERAHQLYRDG--------RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD 74 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~g--------dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~ 74 (281)
+|.++.++-.++.++.... +...|.....+++.+ +.++..+.+|.-+|..+...|++++|...|.+|+.++
T Consensus 372 dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al-~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 372 EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL-PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc-ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 6888888888887775542 234455555555543 2266778889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023491 75 YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVY 114 (281)
Q Consensus 75 p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a 114 (281)
| +..+|..+|.++...|++++|+..|++|+.++|..+..
T Consensus 451 p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 451 M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 9 58899999999999999999999999999999998753
No 120
>PRK11906 transcriptional regulator; Provisional
Probab=98.52 E-value=2.3e-06 Score=82.54 Aligned_cols=111 Identities=8% Similarity=-0.101 Sum_probs=99.5
Q ss_pred CCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 3 SPAAPANKIERAHQLYRD---------GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL 73 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~---------gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i 73 (281)
+|..+.++-.++.|++.. ..-.+|+.+-.+|+.+ ++.++.++..+|.++...++++.|+..|++|+.+
T Consensus 291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel---d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L 367 (458)
T PRK11906 291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI---TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH 367 (458)
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc
Confidence 577788888888888765 2446788889999998 9999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023491 74 DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN 116 (281)
Q Consensus 74 ~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~ 116 (281)
+|+.+.+||.+|.+++..|+.++|+..+++|++++|.-..+..
T Consensus 368 ~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 368 STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 9999999999999999999999999999999999997554433
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.49 E-value=6e-06 Score=67.86 Aligned_cols=119 Identities=14% Similarity=0.051 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALML 83 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~ 83 (281)
+...+......+..+++..+...+...+...+..+....+.+.+|.+++..|+|++|+..|..++...++. ..+.++
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 45667777888889999999999999999833333447888999999999999999999999999987654 358999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+|.+++..|+|++|+..++. +.-.+-.+.+..+++.|....+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC
Confidence 99999999999999999966 3333345566677777665544
No 122
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.48 E-value=1.2e-06 Score=86.57 Aligned_cols=115 Identities=14% Similarity=0.071 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL 88 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~ 88 (281)
.++.++...|..++|...+......|.. .|.+.......|..+..+|+-++|...+..+++.++.+.-||+-+|.++
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 5677888888889999999888888887 7888888888888888899999999999999998888888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 89 VTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 89 ~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
..-++|.+|+++|+.||.++|+|..++.-++.++.++.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR 123 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888887777665
No 123
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.46 E-value=3.9e-06 Score=77.94 Aligned_cols=106 Identities=15% Similarity=0.081 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----------------------------------cCcccHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAK----------------------------------IKQQKIALHSNRA 51 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~----------------------------------~~p~~~~a~~nra 51 (281)
..+....+|..++..|++..|+..+.+++...| .+|....++..+|
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 445666778888888888888888887776511 2233334455677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491 52 ACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS 111 (281)
Q Consensus 52 ~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~ 111 (281)
.+++.+|++.+|+..|++++.++|++..+++.+|.+++..|++++|+..|++++.+.|.+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 788888888888888888888888888888888888888888888888888888887653
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=6.4e-06 Score=73.83 Aligned_cols=121 Identities=21% Similarity=0.086 Sum_probs=104.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
+|.+...++.+-...-.+|+-.+||+.....+.. -+.+..+|..++.+|+..|+|.+|+-+++.++-+.|-++.++.
T Consensus 116 dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~ 192 (289)
T KOG3060|consen 116 DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ 192 (289)
T ss_pred CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 5778888887778888899999999999999998 7888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 83 LRAQTLVTLKE---YNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 83 ~lg~a~~~~g~---~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
++|.+++.+|. +..|..+|.++|+++|.+-.++..+-.+-..+.
T Consensus 193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 193 RLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 99999998874 788999999999999965555544444444443
No 125
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.41 E-value=3e-06 Score=81.25 Aligned_cols=91 Identities=21% Similarity=0.206 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL 88 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~ 88 (281)
.....+..++..++..+|+..+.++|.. .|.+..++...|..+++.++|+.|+..+.+++.+.|...++|+.||.+|
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~---~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Y 278 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALKE---NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECY 278 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3344555666666666666666666665 5556666666666666666666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHH
Q 023491 89 VTLKEYNSALFDVN 102 (281)
Q Consensus 89 ~~~g~~~eAl~~~e 102 (281)
..+|+|+.|+..+.
T Consensus 279 i~~~d~e~ALlaLN 292 (395)
T PF09295_consen 279 IQLGDFENALLALN 292 (395)
T ss_pred HhcCCHHHHHHHHh
Confidence 66666666665544
No 126
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.40 E-value=3.6e-06 Score=82.91 Aligned_cols=122 Identities=23% Similarity=0.234 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY------ 75 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p------ 75 (281)
+..+...|..|...++|.+|+.+|.+|+.+.. .+|..+.++.|+|.+|++.|+|.+|..+|++|++|-.
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~ 320 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS 320 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence 34455689999999999999999999998864 6788899999999999999999999999999998852
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhhcC
Q 023491 76 --NHTGALMLRAQTLVTLKEYNSALFDVNRLIELN-----PSS---EVYQNLQARLKTQLSLA 128 (281)
Q Consensus 76 --~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld-----P~~---~~a~~~l~~l~~~l~~~ 128 (281)
.-...+.+++.++..++++++|+..|++++++- +.+ +.+..+++.+....+..
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 223478889999999999999999999999973 233 45666677776666554
No 127
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.40 E-value=1.1e-05 Score=72.40 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG---ALM 82 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~---a~~ 82 (281)
.+..|++.|...+..|+|.+|+..|......-+..|....+.+.++.++++.++|+.|+..+++-+++.|.++. ++|
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 57889999999999999999999999999987777788999999999999999999999999999999998765 789
Q ss_pred HHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh
Q 023491 83 LRAQTLVTLKE--------YNSALFDVNRLIELNPSSEV---YQNLQARLKTQL 125 (281)
Q Consensus 83 ~lg~a~~~~g~--------~~eAl~~~ekAL~ldP~~~~---a~~~l~~l~~~l 125 (281)
.+|.+++..=+ ...|+..|+.++.--|+.+- +...+..+...|
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L 166 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL 166 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH
Confidence 99999876432 67899999999999998754 334444444443
No 128
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=1.1e-06 Score=81.28 Aligned_cols=114 Identities=18% Similarity=0.031 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491 5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR 84 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l 84 (281)
.+++.+.+.|.|++-.++|+-++..|.+|+.........+.+|||+|.+..-.|++.-|..+|+-++..++++.+++-+|
T Consensus 356 ~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNL 435 (478)
T KOG1129|consen 356 QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNL 435 (478)
T ss_pred CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhH
Confidence 36778889999999999999999999999998776677899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491 85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l 118 (281)
|..-.+.|+...|...|..|-.+.|.-.+...++
T Consensus 436 avL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 436 AVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred HHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 9999999999999999999999999765544443
No 129
>PRK11906 transcriptional regulator; Provisional
Probab=98.37 E-value=6.9e-06 Score=79.29 Aligned_cols=117 Identities=11% Similarity=0.002 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCC
Q 023491 9 NKIERAHQLYRDG---RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL---------HDFKKAAEECTSVLELDYN 76 (281)
Q Consensus 9 ~l~~~G~~~~~~g---dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl---------g~y~~Ai~~~~~al~i~p~ 76 (281)
.++.+|...+..+ ....|+.+|.+++...+.+|..+.+|..+|.|++.. ....+|+....+|+++++.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 5577888887765 457789999999933333999999999999999865 2456788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 77 HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 77 ~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
++.+++.+|.++...++++.|+..|++|+.++|+.+.++...+.+.-.-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~ 385 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHN 385 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998888766553
No 130
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.37 E-value=8.7e-06 Score=78.20 Aligned_cols=119 Identities=15% Similarity=-0.037 Sum_probs=99.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--HH
Q 023491 5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIAL--HSNRAACYLKLHDFKKAAEECTSVLELDYNHT--GA 80 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a--~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~--~a 80 (281)
.++..+...|..+...|++++|+..+.+++.. .|.+... ..-+....+..++...++..++++++..|+++ ..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~l 337 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCI 337 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHH
Confidence 58889999999999999999999999999998 6665532 13344444557889999999999999999999 88
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491 81 LMLRAQTLVTLKEYNSALFDVN--RLIELNPSSEVYQNLQARLKTQLSL 127 (281)
Q Consensus 81 ~~~lg~a~~~~g~~~eAl~~~e--kAL~ldP~~~~a~~~l~~l~~~l~~ 127 (281)
+..+|.+++++|+|.+|..+|+ .++.+.|+..... .++.+...++.
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~ 385 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGD 385 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCC
Confidence 8899999999999999999999 6888999887655 66767665543
No 131
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.37 E-value=6.3e-06 Score=82.98 Aligned_cols=118 Identities=17% Similarity=0.090 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL 88 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~ 88 (281)
.|...|..+.+.+.-++|..+..++-.+ .+..+..|+.+|.++...|.+.+|.+.|..++.++|+++.+.-.+|.++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~---~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI---DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc---chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3446677777888889999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491 89 VTLKEYNSALF--DVNRLIELNPSSEVYQNLQARLKTQLSLAP 129 (281)
Q Consensus 89 ~~~g~~~eAl~--~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~ 129 (281)
...|+-.-|.. .+..+++++|.|+.+|..++.+.++++...
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 99999888888 999999999999999999999998876553
No 132
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=9.9e-07 Score=85.68 Aligned_cols=116 Identities=24% Similarity=0.195 Sum_probs=101.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcCCCHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK---LHDFKKAAEECTSVLELDYNHTGA 80 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k---lg~y~~Ai~~~~~al~i~p~~~~a 80 (281)
|.+++..+..|+..|..+.+..|+.+|.+++.. .|....+|.|+|.++++ .|+--.|+.+|..+++++|...++
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~---~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQY---VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh---ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 446778889999999999999999999999998 89999999999999998 458889999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491 81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122 (281)
Q Consensus 81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~ 122 (281)
+|+|+.++..++++.+|+.+...+....|.+........-+.
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~ 489 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLP 489 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccc
Confidence 999999999999999999999887778886655444433333
No 133
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.35 E-value=3.7e-06 Score=82.84 Aligned_cols=107 Identities=20% Similarity=0.235 Sum_probs=95.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY- 75 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p- 75 (281)
-+|.-+..+.++|..|++.|+|.+|..++.+|+.+.. ..+.-+..+.+++.++..+++|++|+..+.+++++.-
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 3567788999999999999999999999999999875 4566788899999999999999999999999988742
Q ss_pred -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491 76 -------NHTGALMLRAQTLVTLKEYNSALFDVNRLIELN 108 (281)
Q Consensus 76 -------~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld 108 (281)
.-+..+-++|.+|+.+|+|.+|...|++|+.+.
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 335689999999999999999999999999975
No 134
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.2e-05 Score=76.43 Aligned_cols=121 Identities=16% Similarity=0.089 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHH----------------
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEE---------------- 66 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~---------------- 66 (281)
+|.+...++.+|+.+...|+..+|+-.|..|+.+ .|.+...|-.+-.||+..|.+.+|.-.
T Consensus 330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L---ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~Lt 406 (564)
T KOG1174|consen 330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQML---APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLT 406 (564)
T ss_pred CcccchHHHhccHHHHhccchHHHHHHHHHHHhc---chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhh
Confidence 5778899999999999999999999999999999 888899999999999888886655444
Q ss_pred --------------------HHHHHHhcCCCHHH---------------------------------HHHHHHHHHHcCC
Q 023491 67 --------------------CTSVLELDYNHTGA---------------------------------LMLRAQTLVTLKE 93 (281)
Q Consensus 67 --------------------~~~al~i~p~~~~a---------------------------------~~~lg~a~~~~g~ 93 (281)
++++++++|.+..+ +--||.++...+.
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNE 486 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhh
Confidence 44444444555433 3345556666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 94 YNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 94 ~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+++|+..|..||+++|.+......+.++++...
T Consensus 487 ~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 777777788888888888777777777766544
No 135
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.35 E-value=2.3e-05 Score=75.24 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 023491 12 ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT-GALMLRAQTLVT 90 (281)
Q Consensus 12 ~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~-~a~~~lg~a~~~ 90 (281)
..|...+..|+|..|.+.+.++... .|.....+...|.++.++|+++.|...+.++.+..|++. .+...++.++..
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 3444444445555555555444443 333334444444444444555555555544444444432 233333444444
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491 91 LKEYNSALFDVNRLIELNPSSEVYQNLQARL 121 (281)
Q Consensus 91 ~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l 121 (281)
.|+++.|+..++++++..|+++.+...+..+
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~ 196 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEA 196 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4555555555555555555444444443333
No 136
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.34 E-value=2e-05 Score=70.82 Aligned_cols=120 Identities=9% Similarity=0.074 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC------------------HHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD------------------FKKAAEEC 67 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~------------------y~~Ai~~~ 67 (281)
...+.+..|.++++.++|..|+..|++.+...|.+|....+++.+|.|++.++. ...|+..|
T Consensus 68 a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~ 147 (243)
T PRK10866 68 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF 147 (243)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH
Confidence 445568999999999999999999999999988888889999999999866651 35788999
Q ss_pred HHHHHhcCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 68 TSVLELDYNHTG-----------------ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 68 ~~al~i~p~~~~-----------------a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
+.+|+..|++.- --+..|..|++.|.|..|+.-++.+++--|+.+.....+..+....
T Consensus 148 ~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay 222 (243)
T PRK10866 148 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAY 222 (243)
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 999999998751 3456788899999999999999999999999777666666554443
No 137
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.32 E-value=7.3e-06 Score=81.48 Aligned_cols=121 Identities=14% Similarity=0.051 Sum_probs=108.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL 81 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~ 81 (281)
++|++-+.++..-...+.+.+|+.|..+|.++-.. .-...+|+.-+....-+++.++|+..|+.+|+..|.+.+.|
T Consensus 613 ~~pnseeiwlaavKle~en~e~eraR~llakar~~----sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~ 688 (913)
T KOG0495|consen 613 ANPNSEEIWLAAVKLEFENDELERARDLLAKARSI----SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLW 688 (913)
T ss_pred hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc----CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHH
Confidence 57888888888888889999999999999998774 34567888888888889999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+.+|+++.++++.+.|...|...++.-|.....+.++++|..+..
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999887764
No 138
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=1e-05 Score=74.71 Aligned_cols=121 Identities=16% Similarity=0.155 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAK--IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
...++..+-..|...++|.+||..-.+.+.+.+ ..-..+.+|.-+|..++...+++.|+..+.+|+..+|+..++-..
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~ 219 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII 219 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence 344556666777777777777777776666522 112347788999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhh
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSS-EVYQNLQARLKTQLS 126 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~-~~a~~~l~~l~~~l~ 126 (281)
+|.++...|+|+.|+..|+++++.||.. +++...+..+...++
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999974 455555555555554
No 139
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.5e-06 Score=78.40 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT 87 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a 87 (281)
..+.+.+.|+++.++|..|+..-.++|.+ +|.+..++|.+|.|++.+|+|+.|+.+|.++++++|.|-.+...+..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLEL---DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 35778999999999999999999999999 999999999999999999999999999999999999998888887777
Q ss_pred HHHcCCHHHH-HHHHHHHHH
Q 023491 88 LVTLKEYNSA-LFDVNRLIE 106 (281)
Q Consensus 88 ~~~~g~~~eA-l~~~ekAL~ 106 (281)
..+...+.+. .+.|.+.+.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 7666555544 445554443
No 140
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.29 E-value=1.8e-05 Score=78.59 Aligned_cols=119 Identities=15% Similarity=0.118 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh-
Q 023491 6 APANKIERAHQLYRDGR---YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH--------DFKKAAEECTSVLEL- 73 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gd---y~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg--------~y~~Ai~~~~~al~i- 73 (281)
++-.++.+|..++..+. +..|+.+|++|+.+ +|..+.++..++.||.... +...+.....+++.+
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 45567788988887765 88999999999999 9999999999998886643 244556666666554
Q ss_pred -cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491 74 -DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 74 -~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
++..+.+|.-+|.++...|++++|...|++|+.++|+ ..++.+++++....+..
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~ 469 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDN 469 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCH
Confidence 7778899999999999999999999999999999994 67888888887766543
No 141
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.26 E-value=2.3e-05 Score=75.06 Aligned_cols=117 Identities=13% Similarity=0.040 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
|.++......|..+...|++.+|...+.+++.. .+ +..+...++.+ ..+++.+++..++..++.+|+++..++.
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~ 333 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWST 333 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHH
Confidence 557888889999999999999999999999984 33 33333333333 4599999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL 127 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~ 127 (281)
+|.++...|+|.+|...|++++.+.|++... ..++.+...++.
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~ 376 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHK 376 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCC
Confidence 9999999999999999999999999998763 356666665543
No 142
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.1e-05 Score=71.99 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHH
Q 023491 22 RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLK---EYNSAL 98 (281)
Q Consensus 22 dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g---~~~eAl 98 (281)
..+..+.-++..|.. +|.++.-|..+|.+|+.+|++..|...|.+++++.|+++..+..+|.+++... ...+|.
T Consensus 137 ~~~~l~a~Le~~L~~---nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 137 EMEALIARLETHLQQ---NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred cHHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 355666677777887 99999999999999999999999999999999999999999999999987764 378899
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 99 FDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 99 ~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
..|+++|.++|.|..+..+++.-....
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~ 240 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQ 240 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence 999999999999999988887665443
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.24 E-value=2.3e-06 Score=63.73 Aligned_cols=61 Identities=25% Similarity=0.417 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a 70 (281)
+...++.+|.++|+.|+|.+|+..+.+ +.. ++....+++.+|.|++++|+|++|+..|.++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~---~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL---DPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH---HHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC---CCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 456777899999999999999999999 666 7777888888999999999999999999875
No 144
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.24 E-value=5.6e-05 Score=72.48 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=60.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHH
Q 023491 10 KIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNR-AACYLKLHDFKKAAEECTSVLELDYNHTG-ALMLRAQT 87 (281)
Q Consensus 10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nr-a~~~~klg~y~~Ai~~~~~al~i~p~~~~-a~~~lg~a 87 (281)
.+..|..++..|+|..|.++...+... ...+.+++.+ +.+..+.|+++.|...|.++.+.+|++.- .....+.+
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADH----AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 345555666666666666555544432 2223333333 33336666666666666666666665532 33334666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491 88 LVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122 (281)
Q Consensus 88 ~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~ 122 (281)
+...|+++.|+..++++++.+|+++.+...+..+.
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~ 197 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY 197 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 66666666666666666666666665555554444
No 145
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=4.7e-06 Score=83.53 Aligned_cols=121 Identities=16% Similarity=0.204 Sum_probs=106.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
+|.....|+..|.++++.+++..|+..|+.++.+ +|.++.+|+|++.+|+++++-.+|...+..|++-+-.++..|-
T Consensus 515 nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL---~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE 591 (777)
T KOG1128|consen 515 NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL---EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE 591 (777)
T ss_pred CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc---CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence 6889999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
|.-.+....|.++.|+..|.+.+.+.-....-......+...+.
T Consensus 592 Nymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred chhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 99999999999999999999999875443333333333444333
No 146
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1e-05 Score=79.13 Aligned_cols=118 Identities=9% Similarity=0.037 Sum_probs=107.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
-|..+-.|+..|.-|+.-|.+.+|..+|.++..+ ++....+|...|+.+.-.|+-++|+.+|..|-++-+.....++
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l---D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L 384 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL---DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL 384 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc---CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH
Confidence 3778888999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT 123 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~ 123 (281)
.+|.=|.+++++.-|-+.|..|+.+.|.++-+...++-|.-
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY 425 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence 99999999999999999999999999998887766665544
No 147
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=3.7e-05 Score=71.11 Aligned_cols=111 Identities=19% Similarity=0.125 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT-GALMLRA 85 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~-~a~~~lg 85 (281)
|+.+.++|..+....+.+.|+..+.+|+.. +|.+..+-..+|.+++..|+|.+|++.++.+++-+|.+. .++-.|.
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 456778899999999999999999999998 999999999999999999999999999999999999875 6888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491 86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR 120 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~ 120 (281)
.||.++|+.++.+..+.++.+..++......+...
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~l 291 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADL 291 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHH
Confidence 99999999999999999999999886655444333
No 148
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=1.7e-05 Score=82.64 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----------------CcccHHHHHHHHHHHHHcCCHHHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKI----------------KQQKIALHSNRAACYLKLHDFKKAAEE 66 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~----------------~p~~~~a~~nra~~~~klg~y~~Ai~~ 66 (281)
+|.....++..|..++..+++..|.-. .++...+. .+.+-.+++.+|.||-++|++++|...
T Consensus 61 ~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~ 138 (906)
T PRK14720 61 HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGV 138 (906)
T ss_pred CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHH
Confidence 678888899999999998888877766 55555221 223337899999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 67 CTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 67 ~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
|+++|+++|.++.++-++|-.|... +++.|+..+.+|+...=+
T Consensus 139 yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 139 WERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 999999999999887433
No 149
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=7.8e-05 Score=64.42 Aligned_cols=118 Identities=23% Similarity=0.275 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN--HTGALML 83 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~--~~~a~~~ 83 (281)
+.+..+.+|+.+...|+|.+|..+|.+++.- .-..++..++.++.+.+..+++..|...++.+++.+|. .+..++.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG--~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSG--IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc--ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4556778999999999999999999999984 23467889999999999999999999999999999984 5678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+|.+|...|.+..|...|+.++..-|+-. .+-..+.+...++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qg 207 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQG 207 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhc
Confidence 99999999999999999999999998754 4444444444433
No 150
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.11 E-value=6e-06 Score=50.80 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
.+|+++|.++..+|++.+|+.+|+++|+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666664
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.10 E-value=3.9e-05 Score=69.87 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA 80 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a 80 (281)
.+.+++-+|.+++..|+|..|+..|..++...+.++....+++.+|.++..+|++++|+..|..+++..|++..+
T Consensus 179 a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 179 QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 368999999999999999999999999999877777889999999999999999999999999999999988754
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.09 E-value=6.1e-05 Score=68.90 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------
Q 023491 7 PANKIERAHQLYRD-GRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN------ 76 (281)
Q Consensus 7 a~~l~~~G~~~~~~-gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~------ 76 (281)
+..+...|..+... |+++.|+.+|.+|+.+..... ....++.++|.++.++|+|.+|+..|++++...-.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 56677788888888 899999999999999876222 33667889999999999999999999999875321
Q ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491 77 HT-GALMLRAQTLVTLKEYNSALFDVNRLIELNPSS 111 (281)
Q Consensus 77 ~~-~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~ 111 (281)
+. ..++..+.|++.+|++..|...|++....+|..
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 12 356778889999999999999999999999864
No 153
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.09 E-value=2.5e-05 Score=77.52 Aligned_cols=121 Identities=16% Similarity=0.104 Sum_probs=107.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
-|...+.+-.+|..+...|+-++|..+-..++.. ++....+|--+|.++..-++|++||.+|+.|+.+.++|...|.
T Consensus 37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~---d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN---DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred CCccchhHHhccchhhcccchHHHHHHHHHHhcc---CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3566777888999999999999999999999997 8888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
-++....++++|+..+..-.+.|++.|.....|...+...-.++
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877766665554443
No 154
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.08 E-value=5.9e-05 Score=60.71 Aligned_cols=82 Identities=21% Similarity=0.097 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 023491 45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALMLRAQTLVTLKEYNSALFDVNRLIELNPS---SEVYQNLQ 118 (281)
Q Consensus 45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~---~~~a~~~l 118 (281)
.+.|++|.++-.+|+..+|+..|++++...... ..+++.+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467899999999999999999999999976443 579999999999999999999999999999898 77777666
Q ss_pred HHHHHHhh
Q 023491 119 ARLKTQLS 126 (281)
Q Consensus 119 ~~l~~~l~ 126 (281)
+.+...++
T Consensus 82 Al~L~~~g 89 (120)
T PF12688_consen 82 ALALYNLG 89 (120)
T ss_pred HHHHHHCC
Confidence 65554443
No 155
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.07 E-value=5.4e-05 Score=69.86 Aligned_cols=120 Identities=13% Similarity=-0.030 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH--DFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg--~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
+.+.....-.++++.++++.|.+.+...-.. +.....+.+.-|.+.+..| .+..|...|+.+....+.++..+..
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng 206 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQI---DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNG 206 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 4556666678889999999999998887766 5555555555555555666 5999999999987777788889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
+|.|++.+|+|++|...++.++..+|.++.+..++..+...++..
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999888887777666544
No 156
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3.1e-05 Score=73.65 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491 5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR 84 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l 84 (281)
..+..|+..|...|..++|..|+.+-.++|.. ++.+..++...|.++..+|+...|+-.|+.|+.+.|...++|-.|
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~---~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL 374 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDS---EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGL 374 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc---CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 35667888899999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491 85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~ 119 (281)
-.+|...|++.+|...-+.++...|.+.....+++
T Consensus 375 ~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 375 FHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 99999999999888888888887777777666653
No 157
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.05 E-value=1.3e-05 Score=49.02 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491 79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSS 111 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~ 111 (281)
.+|+.+|.+++.+|++++|+.+|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777654
No 158
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=5e-05 Score=71.18 Aligned_cols=109 Identities=22% Similarity=0.227 Sum_probs=72.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------HHhc----
Q 023491 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV--------------LELD---- 74 (281)
Q Consensus 13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a--------------l~i~---- 74 (281)
.|.|+|+.|+|++|+..|+-+... +.....++.|+|.|++-+|.|.+|...-.++ .+++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~---~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK---DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc---CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence 488999999999999999999886 7777888888999998888877776654433 1111
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 75 --------YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 75 --------p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
.+..+--+.||-+++..-.|++|+..|.++|.-+|+.-.+-..++.+..+
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK 197 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK 197 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh
Confidence 11112334455555555667777777777776666544444444444433
No 159
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.03 E-value=1.3e-05 Score=52.64 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491 80 ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118 (281)
Q Consensus 80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l 118 (281)
+++.+|.+|..+|++++|+..|+++++.+|++..++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 344445555555555555555555555555554444443
No 160
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.02 E-value=1.4e-05 Score=52.45 Aligned_cols=42 Identities=26% Similarity=0.154 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491 45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ 86 (281)
Q Consensus 45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~ 86 (281)
.+++.+|.+|..+|++++|+..|+++++.+|+++.+++.+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999999999885
No 161
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.01 E-value=0.00018 Score=58.75 Aligned_cols=99 Identities=22% Similarity=0.218 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-------------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAK-------------------IKQQKIALHSNRAACYLKLHDFKKAAEECTS 69 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-------------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~ 69 (281)
.+...|......++...++..+.+++.+.. .......+...++.++...|++..|+..|.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 345567777888999999999999998863 1123345566777888899999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 70 VLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 70 al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
++.++|-+-.+|..+-.+|..+|+...|+..|+++...
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887653
No 162
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.00 E-value=1.2e-05 Score=49.39 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491 44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYNH 77 (281)
Q Consensus 44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~ 77 (281)
+.+|+++|.+|+.+|+|++|+.+|+++|+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578999999999999999999999999999863
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.00 E-value=2.3e-05 Score=71.68 Aligned_cols=102 Identities=23% Similarity=0.256 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--cCc-ccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcC--CC---
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK--IKQ-QKIALHSNRAACYLKL-HDFKKAAEECTSVLELDY--NH--- 77 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--~~p-~~~~a~~nra~~~~kl-g~y~~Ai~~~~~al~i~p--~~--- 77 (281)
+...+..+..+++..++.+|+.+|.+++.+.. ..+ .-+.++.++|.+|... |+++.|+..|.+|+.+.. +.
T Consensus 74 Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~ 153 (282)
T PF14938_consen 74 AAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS 153 (282)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence 33444455555666699999999999998765 222 3477889999999888 999999999999987742 12
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491 78 -TGALMLRAQTLVTLKEYNSALFDVNRLIELN 108 (281)
Q Consensus 78 -~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld 108 (281)
..++..+|.++..+|+|.+|+..|+++....
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999998854
No 164
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.98 E-value=7.6e-06 Score=51.06 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 023491 67 CTSVLELDYNHTGALMLRAQTLVTLKEYNSAL 98 (281)
Q Consensus 67 ~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl 98 (281)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888888888888888888888888888876
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=97.96 E-value=5.6e-05 Score=63.86 Aligned_cols=88 Identities=10% Similarity=-0.066 Sum_probs=78.5
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491 40 KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119 (281)
Q Consensus 40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~ 119 (281)
.+......|..|.-++..|+|++|...|+.+..+++-+++.++.||.|+..+++|+.|+..|-.|..++++++......+
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 45567778899999999999999999999999999999999999999999999999999999999999998887777777
Q ss_pred HHHHHhhc
Q 023491 120 RLKTQLSL 127 (281)
Q Consensus 120 ~l~~~l~~ 127 (281)
.+.-.++.
T Consensus 113 qC~l~l~~ 120 (165)
T PRK15331 113 QCQLLMRK 120 (165)
T ss_pred HHHHHhCC
Confidence 66665543
No 166
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.94 E-value=5.4e-05 Score=52.15 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491 79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL 127 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~ 127 (281)
.++|.+|..++++|+|..|+.+.+.+|++.|+|..+..+...+...+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999887654
No 167
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.92 E-value=0.0003 Score=67.55 Aligned_cols=105 Identities=23% Similarity=0.191 Sum_probs=94.8
Q ss_pred HHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 023491 18 YRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSA 97 (281)
Q Consensus 18 ~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eA 97 (281)
...++|+.|+..|++.... +|. +...++.+++..++..+|+..+.++|...|.+...+...|..+...++++.|
T Consensus 180 ~~t~~~~~ai~lle~L~~~---~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRER---DPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred hhcccHHHHHHHHHHHHhc---CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3457999999999998886 654 5566899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491 98 LFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 98 l~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
+...++++.+.|.+-..|..++.+.-.++..
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999998877644
No 168
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.90 E-value=0.00013 Score=67.37 Aligned_cols=106 Identities=22% Similarity=0.251 Sum_probs=84.9
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 023491 12 ERAHQLYRDG--RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLV 89 (281)
Q Consensus 12 ~~G~~~~~~g--dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~ 89 (281)
..|-..+..| .+.+|...|...... .+..+.+++.+|.|++.+|+|++|...+..++..+|.++.++.+++.+..
T Consensus 170 a~awv~l~~g~e~~~~A~y~f~El~~~---~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 170 AEAWVNLATGGEKYQDAFYIFEELSDK---FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHCC---S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3344445555 699999999997665 56788899999999999999999999999999999999999999999999
Q ss_pred HcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491 90 TLKEY-NSALFDVNRLIELNPSSEVYQNLQAR 120 (281)
Q Consensus 90 ~~g~~-~eAl~~~ekAL~ldP~~~~a~~~l~~ 120 (281)
.+|+- +.+.+.+.++...+|.++-+..+..+
T Consensus 247 ~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred HhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 99998 55667788888899998877665543
No 169
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.86 E-value=4.3e-05 Score=46.59 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491 44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYNH 77 (281)
Q Consensus 44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~ 77 (281)
+.+++.+|.+++++|+|++|+.+|.++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578889999999999999999999999998875
No 170
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.84 E-value=1.5e-05 Score=74.24 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491 47 HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119 (281)
Q Consensus 47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~ 119 (281)
.-.+|+-||++|.|++||.+|.++|.++|.++..+.++|.+|++++.|..|..++..|+.|+-..-.++...+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRM 172 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999999999999865444433333
No 171
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.0017 Score=62.74 Aligned_cols=122 Identities=16% Similarity=0.061 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC--------------------------
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD-------------------------- 59 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~-------------------------- 59 (281)
+++++++.++.|-...+..+|+++|.++..+ -|.++..+..+|..|-+.|+
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl---ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL---IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc---CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 6677777777777777777777777777776 55555555555555555554
Q ss_pred --------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCC
Q 023491 60 --------FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPI 130 (281)
Q Consensus 60 --------y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~~ 130 (281)
.++||.+|+++--+.|+..+--+..+.|+.+.|+|+.|+..|+...+..|.+-.....+-++...++....
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~ 712 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDA 712 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhH
Confidence 67888888888888887777777889999999999999999999999999988888888888777766544
No 172
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.0004 Score=60.16 Aligned_cols=105 Identities=16% Similarity=0.090 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-HTGALMLRAQ 86 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-~~~a~~~lg~ 86 (281)
-...+.+..++..++++.|+..+..++...........+-.++|.+.+++|.+++|+..+..... +. .+.....+|.
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGD 167 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhh
Confidence 34567899999999999999999999975333334567789999999999999999998876632 11 2234677899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023491 87 TLVTLKEYNSALFDVNRLIELNPSSEVY 114 (281)
Q Consensus 87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a 114 (281)
++...|+-.+|+..|++++..++.....
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~~s~~~~ 195 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESDASPAAR 195 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHccCChHHH
Confidence 9999999999999999999998554433
No 173
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.83 E-value=0.00015 Score=59.86 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC---------------HHHHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD---------------FKKAAEEC 67 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~---------------y~~Ai~~~ 67 (281)
+|...++.+.+|-++|+.++|..|+..|.+.|++-|.+|.-.-+++.+|++++.+.. ...|...|
T Consensus 43 g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f 122 (142)
T PF13512_consen 43 GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDF 122 (142)
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHH
Confidence 466788899999999999999999999999999977778888999999999999987 89999999
Q ss_pred HHHHHhcCCCHHH
Q 023491 68 TSVLELDYNHTGA 80 (281)
Q Consensus 68 ~~al~i~p~~~~a 80 (281)
..+|+..|++.-+
T Consensus 123 ~~lv~~yP~S~ya 135 (142)
T PF13512_consen 123 EQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHCcCChhH
Confidence 9999999987643
No 174
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=2.2e-05 Score=73.27 Aligned_cols=121 Identities=22% Similarity=0.285 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAK----------------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~----------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al 71 (281)
+...+.|+..|+.++|..|+..|.+++.... ........+.|++.|-++++.+..|+..+..++
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence 3445678899999999999999999988743 122345667889999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491 72 ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 72 ~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
+.++....+||++|.++..+.++.+|++++..+....|++..+...+..++......
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999999999999999999999988888887766544
No 175
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.00031 Score=61.34 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=66.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491 49 NRAACYLKLHDFKKAAEECTSVLELDYNHT-----GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT 123 (281)
Q Consensus 49 nra~~~~klg~y~~Ai~~~~~al~i~p~~~-----~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~ 123 (281)
.-|.-+|+.|+|.+|..-|..||.+.|..+ -+|.++|.|+++++.++.|+..+.++|+|+|.+..+....+.+..
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 368899999999999999999999998754 379999999999999999999999999999987766665555544
Q ss_pred Hh
Q 023491 124 QL 125 (281)
Q Consensus 124 ~l 125 (281)
.+
T Consensus 180 k~ 181 (271)
T KOG4234|consen 180 KM 181 (271)
T ss_pred hh
Confidence 44
No 176
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.79 E-value=8.2e-05 Score=76.99 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 47 HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
|..||..|+..+++.+|+.+|+.+++++|.+..+|..+|.+|...|.|..|++.|.+|..++|.+--.+...+.++..++
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 34466666666666666666666666666666666666666666666666666666666666666555555555544443
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.79 E-value=0.0002 Score=68.38 Aligned_cols=121 Identities=16% Similarity=0.095 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY------NHT 78 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p------~~~ 78 (281)
.++-+.|+++.-.|.|..|+++|..++.++- .....+...|.+|.+|.-+++|.+||.++.+-|.|.. ...
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3556789999999999999999999887643 2345577789999999999999999999988776653 345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHhhcC
Q 023491 79 GALMLRAQTLVTLKEYNSALFDVNRLIELN-----PS-SEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld-----P~-~~~a~~~l~~l~~~l~~~ 128 (281)
++++.||+++-.+|..+.|+.+.+..+++. +. .-.++.++..+...+...
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 799999999999999999999988888763 32 445677777776666543
No 178
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.76 E-value=8.6e-05 Score=76.86 Aligned_cols=110 Identities=16% Similarity=0.052 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL 88 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~ 88 (281)
.|..+|-.+...+++..|+..|+-+++. +|.+..+|..+|.+|...|.|.-|++.|.+|..++|.+.-+-|..+.+.
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~---dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRT---DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME 640 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcC---CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence 4556888899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491 89 VTLKEYNSALFDVNRLIELNPSSEVYQNLQARL 121 (281)
Q Consensus 89 ~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l 121 (281)
+.+|+|.+|+..+...+.........+.-++.+
T Consensus 641 cd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999988766655555554443
No 179
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.74 E-value=0.00042 Score=69.31 Aligned_cols=114 Identities=17% Similarity=-0.005 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
+...++..++.....+..++|+.+++.+|.. -|....+|+.+|.++.++++.+.|...|...++..|.....|..|+
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 4566777778888889999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491 86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~ 122 (281)
.+-.+.|+.-.|...|.++...+|.+..++-..-++.
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRME 763 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 9999999999999999999999999987655443333
No 180
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.73 E-value=0.00018 Score=61.55 Aligned_cols=74 Identities=23% Similarity=0.235 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC-----------H
Q 023491 2 ASPAAPANKIERAHQLYRDG----------RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD-----------F 60 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~g----------dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~-----------y 60 (281)
.||.+++.|..-|.+++... .+.+|+..|+.||.+ +|....+++++|.+|+.++. |
T Consensus 20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I---~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F 96 (186)
T PF06552_consen 20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI---NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYF 96 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 37999999999999988763 456788888888898 99999999999999988764 6
Q ss_pred HHHHHHHHHHHHhcCCCH
Q 023491 61 KKAAEECTSVLELDYNHT 78 (281)
Q Consensus 61 ~~Ai~~~~~al~i~p~~~ 78 (281)
++|..+|.+|...+|.+.
T Consensus 97 ~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 97 EKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHhcCCCcH
Confidence 777777777777777654
No 181
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.73 E-value=0.0018 Score=52.15 Aligned_cols=99 Identities=28% Similarity=0.336 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhcC---CCHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAA-CYLKLHDFKKAAEECTSVLELDY---NHTGALMLR 84 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~-~~~klg~y~~Ai~~~~~al~i~p---~~~~a~~~l 84 (281)
.+...|......+.+..|+..+..++.. .+.........+. +++..|++..|+..|.+++...+ .....++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 173 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALAL---DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcC---CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence 3344444444444444444444444443 2222222222222 44444444444444444444333 233334444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 85 AQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
+..+...+++..|+..+.+++...+.
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 44444444444444444444444444
No 182
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00056 Score=67.58 Aligned_cols=109 Identities=19% Similarity=0.233 Sum_probs=82.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----------------
Q 023491 11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD---------------- 74 (281)
Q Consensus 11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~---------------- 74 (281)
++++-|+|+.+..++|+..++ .. ++.+..+.--+|.++|++|+|++|+..|..+++.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~---~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GL---DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA 156 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cc---cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 688999999999999999988 22 44555566669999999999999999999986554
Q ss_pred --------------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHh
Q 023491 75 --------------Y-NHTGALMLRAQTLVTLKEYNSALFDVNRLIEL--------NPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 75 --------------p-~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l--------dP~~~~a~~~l~~l~~~l 125 (281)
| ++...+||.|.++...|+|..|++.+++|+++ +-+...+...+..|+-++
T Consensus 157 a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 157 AALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred HhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 2 24467899999999999999999999999554 222344555555554443
No 183
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.00042 Score=68.43 Aligned_cols=111 Identities=23% Similarity=0.223 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
|.+..+++..-.++...+.|++|+.+-..-.. ......++|-.|.|+|+++..++|+.++. ..++.....+..
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~----~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L 115 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA----LLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLEL 115 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch----hhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHH
Confidence 66777777777788888888888744222111 12233444789999999999999999998 456677789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSS--EVYQNLQARL 121 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~--~~a~~~l~~l 121 (281)
+|++++++|+|++|+..|+.+++-+-++ ...+.++..+
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 9999999999999999999998866553 3344443333
No 184
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.69 E-value=0.00041 Score=61.36 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=93.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---- 78 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---- 78 (281)
+|.-+.++.-.|.-+...|+|+.|.+.|...+.+ +|..--++.|||.+++--|+|.-|..++.+-..-+|+++
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L 171 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSL 171 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHH
Confidence 5888999999999999999999999999999999 999999999999999999999999999988777765544
Q ss_pred ------------------------------------------------------------------HHHHHHHHHHHHcC
Q 023491 79 ------------------------------------------------------------------GALMLRAQTLVTLK 92 (281)
Q Consensus 79 ------------------------------------------------------------------~a~~~lg~a~~~~g 92 (281)
++||.+|..+...|
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 48999999999999
Q ss_pred CHHHHHHHHHHHHHhC
Q 023491 93 EYNSALFDVNRLIELN 108 (281)
Q Consensus 93 ~~~eAl~~~ekAL~ld 108 (281)
+..+|...|.-++.-+
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999998887654
No 185
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.69 E-value=3.9e-05 Score=73.10 Aligned_cols=99 Identities=22% Similarity=0.267 Sum_probs=81.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCC--CHHH
Q 023491 10 KIERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL----DYN--HTGA 80 (281)
Q Consensus 10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i----~p~--~~~a 80 (281)
+=++|+.||-.|+|+.||.....-|.++. .....-.++.|+|.||.-+|+|..|++.|...+.+ ... .+..
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44678899999999999999888887754 22334578999999999999999999999987544 333 3456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491 81 LMLRAQTLVTLKEYNSALFDVNRLIELN 108 (281)
Q Consensus 81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ld 108 (281)
.|.||++|.-++.++.||.++++-|.+.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999888764
No 186
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.66 E-value=0.0026 Score=57.30 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=104.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhc
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD--------FKKAAEECTSVLELD 74 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~--------y~~Ai~~~~~al~i~ 74 (281)
+|..-++.++.+-++++.++|++|+....+.|.+.|.+|+-.-+++.+|.+++..-+ ...|+..|..+|...
T Consensus 67 s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry 146 (254)
T COG4105 67 SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY 146 (254)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC
Confidence 567788999999999999999999999999999988889999999999999887443 567888899999998
Q ss_pred CCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491 75 YNHT-----------------GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL 127 (281)
Q Consensus 75 p~~~-----------------~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~ 127 (281)
|++. .-=+..|..|.+.|.|-.|+.-++.+++--|+...+...+..+......
T Consensus 147 PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~ 216 (254)
T COG4105 147 PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA 216 (254)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 8764 1234458889999999999999999999988877777777766665543
No 187
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.66 E-value=0.00057 Score=56.01 Aligned_cols=78 Identities=24% Similarity=0.132 Sum_probs=66.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHh
Q 023491 50 RAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSS----EVYQNLQARLKTQL 125 (281)
Q Consensus 50 ra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~----~~a~~~l~~l~~~l 125 (281)
.|.++...|+++.|++.|.++|.+.|.++.+|-++++++.-.|+-++|+.++.+|+++.-+. ..+....+.+.+.+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 77888899999999999999999999999999999999999999999999999999997542 23444455555555
Q ss_pred hc
Q 023491 126 SL 127 (281)
Q Consensus 126 ~~ 127 (281)
..
T Consensus 129 g~ 130 (175)
T KOG4555|consen 129 GN 130 (175)
T ss_pred Cc
Confidence 43
No 188
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.00032 Score=65.93 Aligned_cols=105 Identities=19% Similarity=0.233 Sum_probs=85.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 023491 15 HQLYRDGRYEEALGFYTEALSVAKIKQ-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKE 93 (281)
Q Consensus 15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~ 93 (281)
..++.+.+|..|+.+++-.+.. +. ....+-.-+|.|++++|+|++|+..|+.+...+....+.+.+||.|++-+|.
T Consensus 30 edfls~rDytGAislLefk~~~---~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNL---DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHhcccchhHHHHHHHhhcc---chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence 3567788999999998887765 33 2346677799999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 94 YNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 94 ~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
|.+|.....+| |.++--..++-.+.-++.
T Consensus 107 Y~eA~~~~~ka----~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 107 YIEAKSIAEKA----PKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence 99998776654 777766666666655543
No 189
>PRK10941 hypothetical protein; Provisional
Probab=97.64 E-value=0.00081 Score=61.43 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491 44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT 123 (281)
Q Consensus 44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~ 123 (281)
.....|+=.+|++.++|..|+.+++.++.+.|+++.-+.-+|.+|.++|.+..|+.+|+..++..|+++.+...+..+..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999988887777665
Q ss_pred Hh
Q 023491 124 QL 125 (281)
Q Consensus 124 ~l 125 (281)
.-
T Consensus 261 l~ 262 (269)
T PRK10941 261 IE 262 (269)
T ss_pred Hh
Confidence 53
No 190
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.64 E-value=0.00089 Score=53.78 Aligned_cols=97 Identities=21% Similarity=0.239 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhh---------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------
Q 023491 11 IERAHQLYRDGRYEEALGFYTEALSVAK---------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD------- 74 (281)
Q Consensus 11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~---------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~------- 74 (281)
...|...+..|.|.+|...|.+|+..+. .+-.++-++..++.++..+|+|++++.....+|...
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 3556777888999999999999999864 222457778889999999999999999999998663
Q ss_pred CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 75 YN----HTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 75 p~----~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
.+ +..+-|++|.++..+|..++|+..|+.+.+.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 22 2347899999999999999999999988764
No 191
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00018 Score=66.22 Aligned_cols=95 Identities=22% Similarity=0.293 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCC--
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD----YNH-- 77 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~----p~~-- 77 (281)
..++...++.|+..|+.|+|+.|++.|+.|+.. ....+.+-||+|.|+++.|+|..|+...+.+|+.. |..
T Consensus 141 en~Ad~~in~gCllykegqyEaAvqkFqaAlqv---sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 141 ENEADGQINLGCLLYKEGQYEAAVQKFQAALQV---SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred CCccchhccchheeeccccHHHHHHHHHHHHhh---cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 357888999999999999999999999999998 77788888999999999999999999998887653 211
Q ss_pred -----------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 023491 78 -----------------------TGALMLRAQTLVTLKEYNSALFDV 101 (281)
Q Consensus 78 -----------------------~~a~~~lg~a~~~~g~~~eAl~~~ 101 (281)
.+++-..+.++++.|+++.|...+
T Consensus 218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 136666688899999999887765
No 192
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.60 E-value=0.0052 Score=49.48 Aligned_cols=103 Identities=27% Similarity=0.314 Sum_probs=87.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc
Q 023491 16 QLYRDGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-HTGALMLRAQTLVTL 91 (281)
Q Consensus 16 ~~~~~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-~~~a~~~lg~a~~~~ 91 (281)
+++..|++..|+..|.+++.. .+ .....+..++..+...+++..|+..+..++...+. ....+..++.++...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL---DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 789999999999999999775 54 46677777888788999999999999999999999 799999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491 92 KEYNSALFDVNRLIELNPSSEVYQNLQARL 121 (281)
Q Consensus 92 g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l 121 (281)
+.+..|+..+..++...|........+..+
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence 999999999999999999844444444333
No 193
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.59 E-value=0.0013 Score=53.86 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=74.6
Q ss_pred cccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023491 41 QQKIALHSNRAACYLKLH---DFKKAAEECTSVLE-LDYN-HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ 115 (281)
Q Consensus 41 p~~~~a~~nra~~~~klg---~y~~Ai~~~~~al~-i~p~-~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~ 115 (281)
.......+++|.|+.+.. +..+.|..++.+++ -.|. .-.++|+||..++++|+|..|+.++..+|+..|+|.++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 445677889999988765 46778899999986 3443 457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 023491 116 NLQARLKTQLSLA 128 (281)
Q Consensus 116 ~~l~~l~~~l~~~ 128 (281)
.+...++.++...
T Consensus 109 ~Lk~~ied~itke 121 (149)
T KOG3364|consen 109 ELKETIEDKITKE 121 (149)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887543
No 194
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.55 E-value=0.00016 Score=44.14 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
++|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666666666666666666666666666663
No 195
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.53 E-value=0.0022 Score=63.74 Aligned_cols=104 Identities=20% Similarity=0.161 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ 86 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~ 86 (281)
.+.+.-+..++...|+|.+|+.++...... -.+...++-.+|.+++++|++++|...|..+|..+|++...|..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 456667788999999999999999988776 66778889999999999999999999999999999999999999998
Q ss_pred HHHHcC-----CHHHHHHHHHHHHHhCCCCHH
Q 023491 87 TLVTLK-----EYNSALFDVNRLIELNPSSEV 113 (281)
Q Consensus 87 a~~~~g-----~~~eAl~~~ekAL~ldP~~~~ 113 (281)
++.-.. ....-+..|.......|....
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~ 112 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDA 112 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccc
Confidence 883333 567778888877777765443
No 196
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.53 E-value=9.6e-05 Score=46.01 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=31.5
Q ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHH
Q 023491 29 FYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAE 65 (281)
Q Consensus 29 ~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~ 65 (281)
+|+++|.+ +|.++.+|+++|.+|+..|++++|++
T Consensus 1 ~y~kAie~---~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL---NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH---CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 48899999 99999999999999999999999963
No 197
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.00086 Score=61.87 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=94.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE--------- 72 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~--------- 72 (281)
++|.+...+--+|.|||...+|..|..+|.+.-.+ .|......+..|..+++.+.|..|+........
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~l 115 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVL 115 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHH
Confidence 46777788889999999999999999999999888 888888888899999999998888876543321
Q ss_pred -------hc--------------C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491 73 -------LD--------------Y--NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122 (281)
Q Consensus 73 -------i~--------------p--~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~ 122 (281)
.. | +.+....+.|.++++.|+|+.|++-|+.|++...-++-+..+++.+.
T Consensus 116 qLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH 188 (459)
T KOG4340|consen 116 QLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH 188 (459)
T ss_pred HHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH
Confidence 11 3 45567888899999999999999999999998776666555555443
No 198
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00019 Score=64.10 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491 49 NRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT 123 (281)
Q Consensus 49 nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~ 123 (281)
--|.+++.-..|..|+.+|.++|.++|..+..|-+++.||+++++|+.+..+.++|++++|+.......++...-
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 367888899999999999999999999999999999999999999999999999999999987766665554433
No 199
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.44 E-value=0.002 Score=64.04 Aligned_cols=97 Identities=21% Similarity=0.120 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT 87 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a 87 (281)
..++-+|..+-..|+|.+|+.+..+||.. .|..+.+|+..|.+|-+.|++.+|...+..|-.++..+--.--..+..
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 45677899999999999999999999998 899999999999999999999999999999999998776666666788
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 023491 88 LVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 88 ~~~~g~~~eAl~~~ekAL~l 107 (281)
+.+.|++++|...+....+-
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCC
Confidence 88899999998887655443
No 200
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.0015 Score=59.14 Aligned_cols=81 Identities=15% Similarity=0.120 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
++..+++++=+|.++|.+|+|..|...|..+++-.+..|.-+.+++.+|.|...+|+.++|-..|..+++-.|....+-.
T Consensus 174 s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 174 STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 46678889999999999999999999999999997877888999999999999999999999999999999998877644
Q ss_pred H
Q 023491 83 L 83 (281)
Q Consensus 83 ~ 83 (281)
.
T Consensus 254 A 254 (262)
T COG1729 254 A 254 (262)
T ss_pred H
Confidence 3
No 201
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.0004 Score=67.47 Aligned_cols=120 Identities=8% Similarity=-0.035 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhhhc---Cc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hc---
Q 023491 5 AAPANKIERAHQLYRDGRYEEALGFYTEA-LSVAKI---KQ--QKIALHSNRAACYLKLHDFKKAAEECTSVLE-LD--- 74 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~a-L~~~~~---~p--~~~~a~~nra~~~~klg~y~~Ai~~~~~al~-i~--- 74 (281)
.++..++-+++.+|.+|+|..|.+++... |...+. .| ....+++|+|.++|++|.|.-++.+|.+|++ ..
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 35667888999999999999999986543 211111 12 2466779999999999999999999999996 11
Q ss_pred --------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 75 --------------YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 75 --------------p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
......+|+.|..|...|+--.|.++|.++++..-.|+-+|-.++.+--.
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 23446899999999999999999999999999988899888887776533
No 202
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.34 E-value=0.00047 Score=42.00 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491 45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNH 77 (281)
Q Consensus 45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~ 77 (281)
.+|+.+|.+|.++|++++|+..|.++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 568889999999999999999999999988853
No 203
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.32 E-value=0.0023 Score=62.94 Aligned_cols=105 Identities=21% Similarity=0.132 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVA-KIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-HTGAL 81 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~-~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-~~~a~ 81 (281)
|..+-.++..|..+...|+.+.|+..|++++... ........+++.+|.|++-+++|.+|..+|..+++.+.= .+-..
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~ 343 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA 343 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence 7788888999999999999999999999988531 123455677899999999999999999999999886542 33345
Q ss_pred HHHHHHHHHcCCH-------HHHHHHHHHHHHhC
Q 023491 82 MLRAQTLVTLKEY-------NSALFDVNRLIELN 108 (281)
Q Consensus 82 ~~lg~a~~~~g~~-------~eAl~~~ekAL~ld 108 (281)
|..|.|+..+|+. ++|...|.++-.+-
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 6668899999999 77777777766553
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0037 Score=56.81 Aligned_cols=109 Identities=20% Similarity=0.198 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG 79 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~ 79 (281)
+|..+.....+|....+.||-..|-.+|++.-+... .-.....+..|.+.+|.-.++|..|...|.+++..++.++.
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 456676777778888888888888887775433211 12344566677777888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491 80 ALMLRAQTLVTLKEYNSALFDVNRLIELNPSS 111 (281)
Q Consensus 80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~ 111 (281)
+--+.|.|+.-+|+...|++.++.++...|..
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 88888888888888888888888888888863
No 205
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0012 Score=61.47 Aligned_cols=79 Identities=23% Similarity=0.205 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491 43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH----TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118 (281)
Q Consensus 43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~----~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l 118 (281)
.+.-|-.-|+-||+.++|..|+..|+.+|.....+ +..|.|||.|.+.+|+|..||.++.+++.++|.+..+...-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 35556778999999999999999999999987654 45899999999999999999999999999999976544433
Q ss_pred HHH
Q 023491 119 ARL 121 (281)
Q Consensus 119 ~~l 121 (281)
+.+
T Consensus 160 Akc 162 (390)
T KOG0551|consen 160 AKC 162 (390)
T ss_pred hHH
Confidence 333
No 206
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.19 E-value=0.0014 Score=66.76 Aligned_cols=122 Identities=27% Similarity=0.392 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLK--LHDFKKAAEECTSVLELDYNHTGALMLR 84 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~k--lg~y~~Ai~~~~~al~i~p~~~~a~~~l 84 (281)
..+...|+.+|..++|..|.-.|..++.+.+ .+...+.++.+++.||++ +|+|..++..|..++...|...++++.+
T Consensus 54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r 133 (748)
T KOG4151|consen 54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR 133 (748)
T ss_pred HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence 3456789999999999999888999988866 345667888999999986 5699999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491 85 AQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAP 129 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~ 129 (281)
+.+|...+.++-|++++.-....+|.+..+..-..+++..+....
T Consensus 134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d 178 (748)
T KOG4151|consen 134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKD 178 (748)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcC
Confidence 999999999999999999899999999777776667777665443
No 207
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.19 E-value=0.0012 Score=61.04 Aligned_cols=78 Identities=18% Similarity=0.031 Sum_probs=67.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491 43 KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR 120 (281)
Q Consensus 43 ~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~ 120 (281)
.+.+-.+.|.-.++.|+.++|...|..|+.++|.++.++..+|.....-++.-+|-++|-+||.++|.|..+..+.++
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 355556677777889999999999999999999999999999999998899999999999999999999888777554
No 208
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.15 E-value=0.0066 Score=55.61 Aligned_cols=101 Identities=18% Similarity=0.044 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK-LHDFKKAAEECTSVLELDYNHTGALMLRAQT 87 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k-lg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a 87 (281)
+|+...+...+.+....|...|.+|+.. ......+|...|..-++ .++...|...|+.+++..+.+...|......
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~---~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD---KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 5666777777777788999999999865 56677888888888777 5666669999999999999999988888889
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Q 023491 88 LVTLKEYNSALFDVNRLIELNPSSE 112 (281)
Q Consensus 88 ~~~~g~~~eAl~~~ekAL~ldP~~~ 112 (281)
+..+++...|...|++++..-|...
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999988776655
No 209
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.14 E-value=0.0026 Score=60.94 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cC---c--cc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023491 10 KIERAHQLYRDGRYEEALGFYTEALSVAK-----IK---Q--QK-----IALHSNRAACYLKLHDFKKAAEECTSVLELD 74 (281)
Q Consensus 10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~---p--~~-----~~a~~nra~~~~klg~y~~Ai~~~~~al~i~ 74 (281)
-...|..+|+++.|..|+.-|..+|.++. .. + .+ ...-..+..||+++++-+.|+....+.|-++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 34567889999999999999999999974 11 1 11 2234678999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 75 YNHTGALMLRAQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 75 p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ 106 (281)
|.++.-+++.|.|+..+.+|-+|...+..|.-
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887766554
No 210
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.13 E-value=0.0023 Score=63.51 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=92.6
Q ss_pred HHcCCHHHHHHHHHHHHHhhhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 023491 18 YRDGRYEEALGFYTEALSVAKIKQQ-KIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNS 96 (281)
Q Consensus 18 ~~~gdy~eAl~~y~~aL~~~~~~p~-~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~e 96 (281)
-..|....|+.++..|+.. .|. ......++|.++.+.|-...|-..+.+++.++...+-.+|.+|+++..+++...
T Consensus 618 r~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 3468999999999999987 554 345578899999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 97 ALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 97 Al~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
|++.|+.|+.++|++.....-+..|.-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRCM 722 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 9999999999999999999888877663
No 211
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.09 E-value=0.0026 Score=43.77 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491 46 LHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL 88 (281)
Q Consensus 46 a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~ 88 (281)
++|.+|..++++|+|.+|...+..+|++.|++..+.-....+-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 5678999999999999999999999999999999876665543
No 212
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.09 E-value=0.024 Score=53.91 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY-NHTGALMLRAQ 86 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p-~~~~a~~~lg~ 86 (281)
......|..-+-.|+|.+|..+..++-.. .+....+|..-+.+.-++|+++.|=.++.++-+..+ +...++..++.
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~---~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEH---GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhc---CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 34456777778889999999999998775 666677777777888899999999999999888844 46678888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
++...|++..|...+..+++..|.++.+..+...+.-.+
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~ 200 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRL 200 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHh
Confidence 999999999999999999999999988887766655543
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.0064 Score=55.30 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCHHHHH
Q 023491 10 KIERAHQLYRDGRYEEALGFYTEALSVAKIK-QQKIALHSNRAACYLKLHDFKKAAEECTSVLELD------YNHTGALM 82 (281)
Q Consensus 10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~-p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~------p~~~~a~~ 82 (281)
.+...+++.-.|.|.-.+..|...+.. + +..+.+...+|.+.|+.|+.+.|..+|+.+-+.+ ....-++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~---~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKY---YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHh---CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 345677888899999999999999997 6 7889999999999999999999999999654332 23445788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+.+.+|...++|.+|...|.+++..||.++.+-++++.|.--++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 88999999999999999999999999999998888887776554
No 214
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.07 E-value=0.0011 Score=39.74 Aligned_cols=31 Identities=32% Similarity=0.406 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 80 ALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
++|++|.++..+|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666655554
No 215
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.96 E-value=0.0018 Score=40.56 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 80 ALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 80 a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
+|.++|.+|..+|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788899999999999999999986654
No 216
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.94 E-value=0.008 Score=61.60 Aligned_cols=94 Identities=11% Similarity=0.036 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL 88 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~ 88 (281)
.+......+.+.|++++|..+|.+.- . .| +...|..+..++...|+++.|...+++++.+.|.+...|..++++|
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~~-~---~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRAP-F---KP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHCC-C---CC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 34455666777778888877766531 1 33 4556777888888888888888888888888888888888889999
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 023491 89 VTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 89 ~~~g~~~eAl~~~ekAL~l 107 (281)
.+.|++++|.+.++...+.
T Consensus 539 ~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HhCCCHHHHHHHHHHHHHc
Confidence 9999999999888877654
No 217
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.93 E-value=0.01 Score=62.09 Aligned_cols=100 Identities=15% Similarity=0.052 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc--C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------C
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKI--K-QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN--------H 77 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~--~-p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~--------~ 77 (281)
.+...|..++..|++..|...|.+++..... . .....++.++|.+++..|++..|...+.+++.+... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4456788888899999999999999876441 1 122456788899999999999999999998876322 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491 78 TGALMLRAQTLVTLKEYNSALFDVNRLIELN 108 (281)
Q Consensus 78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld 108 (281)
...+..+|.+++..|++++|...+.+++.+.
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 2345677888999999999999999988764
No 218
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.92 E-value=0.0019 Score=38.74 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491 46 LHSNRAACYLKLHDFKKAAEECTSVLELDYNH 77 (281)
Q Consensus 46 a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~ 77 (281)
+++++|.|++++|++++|+..|+.++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57888999999999999999999998888864
No 219
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.92 E-value=0.016 Score=60.81 Aligned_cols=102 Identities=18% Similarity=0.139 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC-----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----C
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIK-----QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-----H 77 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~-----p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-----~ 77 (281)
..+...|..++..|++..|..++.+++...... +....++..+|.+++..|+++.|...+..++.+... .
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 345677889999999999999999999875421 223445678899999999999999999999876432 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491 78 TGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109 (281)
Q Consensus 78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP 109 (281)
..++..+|.++...|++..|...+.+++.+..
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 45677789999999999999999999987643
No 220
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.88 E-value=0.008 Score=47.56 Aligned_cols=95 Identities=20% Similarity=0.260 Sum_probs=76.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhcCCCHHHH
Q 023491 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD-----------FKKAAEECTSVLELDYNHTGAL 81 (281)
Q Consensus 13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~-----------y~~Ai~~~~~al~i~p~~~~a~ 81 (281)
+|..+|.+|++-+|+++.++.+..-..+...+.++...|.+++++.. +-.|+++|+++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999998722222223667778888776543 5678999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
|.+|.-+-....|++++.-.+++|.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99998887778888888888888765
No 221
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.87 E-value=0.0016 Score=37.09 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491 80 ALMLRAQTLVTLKEYNSALFDVNRLIELNP 109 (281)
Q Consensus 80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP 109 (281)
+++++|.++..+|+++.|+..|++++.++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 445555555555555555555555555544
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.037 Score=50.95 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH------------------
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTS------------------ 69 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~------------------ 69 (281)
+..+..|..+...|++.+|...|..+++. .+....+...++.||...|+++.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ 211 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE 211 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34566788999999999999999999999 888899999999999999999776655543
Q ss_pred ----------------HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh
Q 023491 70 ----------------VLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS--SEVYQNLQARLKTQL 125 (281)
Q Consensus 70 ----------------al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~--~~~a~~~l~~l~~~l 125 (281)
.+..+|++..+-+.+|..+...|+++.|+..+-..|+.+-+ +..++..+-.+-..+
T Consensus 212 ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 212 LLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF 285 (304)
T ss_pred HHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence 11225889999999999999999999999999888888654 334444444444433
No 223
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.77 E-value=0.026 Score=49.88 Aligned_cols=90 Identities=27% Similarity=0.207 Sum_probs=70.6
Q ss_pred cCCHHHHHHHHHHHHHhhh----cCcccHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhcCC------CHHHHH
Q 023491 20 DGRYEEALGFYTEALSVAK----IKQQKIALHSNRAACYLKLHD-------FKKAAEECTSVLELDYN------HTGALM 82 (281)
Q Consensus 20 ~gdy~eAl~~y~~aL~~~~----~~p~~~~a~~nra~~~~klg~-------y~~Ai~~~~~al~i~p~------~~~a~~ 82 (281)
...+.+|+..|.-||-... .....+.+++.+|.+|..+|+ +..|+..|.+++..... ....+|
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 4578999999999887654 122447788999999999998 55677777777665432 246899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNP 109 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP 109 (281)
.+|.+++++|++++|+.+|.+++..--
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 999999999999999999999997643
No 224
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.75 E-value=0.0024 Score=36.38 Aligned_cols=32 Identities=41% Similarity=0.471 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 023491 45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76 (281)
Q Consensus 45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~ 76 (281)
.+++++|.+++.++++..|+..|..++.+.|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46788899999999999999999999888775
No 225
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.74 E-value=0.056 Score=58.26 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=38.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCC
Q 023491 15 HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD-YNHTGALMLRAQTLVTLKE 93 (281)
Q Consensus 15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-p~~~~a~~~lg~a~~~~g~ 93 (281)
..+.+.|++++|..+|...+.. .-..+...|..+..+|.+.|++++|+..|....... ..+...|-.+...|++.|+
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~--G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQ--GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 3344444444444444444332 112234444444555555555555555554443321 1233444444445555555
Q ss_pred HHHHHHHHHHHH
Q 023491 94 YNSALFDVNRLI 105 (281)
Q Consensus 94 ~~eAl~~~ekAL 105 (281)
+++|+..|.+..
T Consensus 735 ~eeAlelf~eM~ 746 (1060)
T PLN03218 735 LPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 226
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.017 Score=51.70 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=76.5
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------
Q 023491 10 KIERAHQLYRD-GRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT------- 78 (281)
Q Consensus 10 l~~~G~~~~~~-gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~------- 78 (281)
++..|..|-.. .++..||.+|+++-.....+. ..-.+++..|..--.+++|.+|+..|+++.+..-++.
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 33444444333 678889999998887654332 2344566666666789999999999999876654443
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023491 79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQ 115 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~ 115 (281)
..++.-|.|++...+.-.|...+++..+++|.....+
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 2456668899998999999999999999999865443
No 227
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.051 Score=49.45 Aligned_cols=120 Identities=15% Similarity=0.047 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh------------------------hcCcccHHHHHHHHHHHHH----cCCH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVA------------------------KIKQQKIALHSNRAACYLK----LHDF 60 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~------------------------~~~p~~~~a~~nra~~~~k----lg~y 60 (281)
.+..-|..+.+.|+|++|+........+- ..+-.+-..+..+|.+|.+ .+.+
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhh
Confidence 34455677777888888887766532210 0122223334445555554 2357
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491 61 KKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 61 ~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
..|.-.|+..-...+..+..+...+.|++.+|+|++|...++.+|.-++++++...++-.+...++..
T Consensus 190 qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 190 QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 77777777766656778888899999999999999999999999999999999999888777666544
No 228
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.70 E-value=0.017 Score=54.96 Aligned_cols=115 Identities=20% Similarity=0.101 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
++......+..+...|++++|.....+++.. .-+..++...+ ..+.+++..=++..++.++..|+++..++.||
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~----~~D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG 335 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKR----QWDPRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLG 335 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHh----ccChhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHH
Confidence 4566677788889999999999999999885 22333222222 23577778888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491 86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL 127 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~ 127 (281)
..+++.+.|.+|-.+|+.|+.+.|... -..+++.+...++.
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~ 376 (400)
T COG3071 336 RLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGE 376 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCC
Confidence 888888888888888888888776543 34555555555443
No 229
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.69 E-value=0.061 Score=58.03 Aligned_cols=61 Identities=8% Similarity=0.045 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 46 LHSNRAACYLKLHDFKKAAEECTSVLELD-YNHTGALMLRAQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 46 a~~nra~~~~klg~y~~Ai~~~~~al~i~-p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ 106 (281)
.|..+..+|.+.|++++|+..|..+.+.+ +.+...|-.+..+|++.|++++|+..|.....
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444433 22333444444444444444444444444443
No 230
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.69 E-value=0.0013 Score=63.68 Aligned_cols=83 Identities=20% Similarity=0.154 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
+|.++..+-+++.++++.++|..|+.-..+||+. +|....+|+.+|.+++.++.|.+|+.+|..+..+.|+.+.+..
T Consensus 34 dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 34 DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHH
Confidence 4667777778899999999999999999999999 9999999999999999999999999999999999999998877
Q ss_pred HHHHHH
Q 023491 83 LRAQTL 88 (281)
Q Consensus 83 ~lg~a~ 88 (281)
.+.-|-
T Consensus 111 ~~~Ec~ 116 (476)
T KOG0376|consen 111 KIDECN 116 (476)
T ss_pred HHHHHH
Confidence 775553
No 231
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.65 E-value=0.021 Score=59.07 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=47.7
Q ss_pred HcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 023491 19 RDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSAL 98 (281)
Q Consensus 19 ~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl 98 (281)
..++|..|+....+.++. .|+...+..--|..++++|.+++|..+++..-...+++-..+--+-+||..++++++|+
T Consensus 21 d~~qfkkal~~~~kllkk---~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK---HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 344555555555555555 55555555555555555555555554444433333444445555555555555555555
Q ss_pred HHHHHHHHhCCC
Q 023491 99 FDVNRLIELNPS 110 (281)
Q Consensus 99 ~~~ekAL~ldP~ 110 (281)
..|++++..+|+
T Consensus 98 ~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 98 HLYERANQKYPS 109 (932)
T ss_pred HHHHHHHhhCCc
Confidence 555555555555
No 232
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.017 Score=58.02 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491 10 KIERAHQLYRDGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ 86 (281)
Q Consensus 10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~ 86 (281)
+-+.|..+|+..+|..+++.|...+...+.+. ..+....+++.||+.+.+++.|++.+..|=+.+|.++-+-+..-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 44678899999999999999999998866332 236778899999999999999999999999999999999899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 023491 87 TLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 87 a~~~~g~~~eAl~~~ekAL~l 107 (281)
+....+.-.+|+.+..+....
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 999999999999998877664
No 233
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.017 Score=56.33 Aligned_cols=106 Identities=15% Similarity=0.049 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
-++...|+..|.--..++++..|...|.+||.. +..+..+|+..+-+-|+.+...-|...+.+|+.+-|.--..||.
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdv---d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK 146 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDV---DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH
Confidence 356778888888888999999999999999998 88999999999999999999999999999999999998899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSE 112 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~ 112 (281)
.-.+-..+|+...|.+.|++=+...|+..
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence 99999999999999999999999988743
No 234
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.55 E-value=0.0057 Score=38.17 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 46 LHSNRAACYLKLHDFKKAAEECTSVLEL 73 (281)
Q Consensus 46 a~~nra~~~~klg~y~~Ai~~~~~al~i 73 (281)
++.++|.+|.++|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777777777777777775443
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.55 E-value=0.025 Score=55.64 Aligned_cols=99 Identities=15% Similarity=0.026 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHH
Q 023491 20 DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH----TGALMLRAQTLVTLKEYN 95 (281)
Q Consensus 20 ~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~----~~a~~~lg~a~~~~g~~~ 95 (281)
......|..++...... .|+....++..|.++...|+.++|+..|.+++...... .-++|.+|.++..+++|+
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45667788888888887 89999999999999999999999999999988543322 348999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491 96 SALFDVNRLIELNPSSEVYQNLQARL 121 (281)
Q Consensus 96 eAl~~~ekAL~ldP~~~~a~~~l~~l 121 (281)
+|..+|.++++.+.-.......+..+
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999876555544444433
No 236
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.51 E-value=0.056 Score=56.04 Aligned_cols=110 Identities=19% Similarity=0.126 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
.|+..-+..-.|-.+++.|.+++|..+++..-.. .+.+-..+-.+-.||..++++++|...|++++..+|. -+-++
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~---~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~ 114 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL---KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLY 114 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC---CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHH
Confidence 5778888888999999999999999777766554 5567777778999999999999999999999999998 88888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN 116 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~ 116 (281)
.+-.+|.+.+.|..=.+.--+.-+..|.++-...
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfW 148 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFW 148 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHH
Confidence 9999999999987766666666667788774433
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.51 E-value=0.027 Score=45.77 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~ 72 (281)
..+...+..+...|++..|+..+.+++.. +|.+-.++..+-.+|..+|++..|+..|.+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~---dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL---DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH---STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45567778889999999999999999999 999999999999999999999999999988743
No 238
>PLN03077 Protein ECB2; Provisional
Probab=96.49 E-value=0.11 Score=54.62 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT 87 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a 87 (281)
..+......+.+.|++++|..++.+. .. .|. ...|..+-.++...|+.+.|....+++++++|++...|..++++
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~---~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM-PI---TPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNL 700 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC-CC---CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Confidence 34444555555556666665555542 11 222 33344444444555666666666666667777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 023491 88 LVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 88 ~~~~g~~~eAl~~~ekAL~ 106 (281)
|...|+|++|.+..+...+
T Consensus 701 ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 701 YADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHCCChHHHHHHHHHHHH
Confidence 7777777777666655443
No 239
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.41 E-value=0.036 Score=56.87 Aligned_cols=99 Identities=13% Similarity=-0.016 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD----------- 74 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~----------- 74 (281)
+...|......|.+.|++++|+.+|.+.... .-..+...|..+..++.++|.++.|...+..+++..
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 4455666667777777777777777665442 011123334444444444444444444444443332
Q ss_pred ---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 75 ---------------------YNHTGALMLRAQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 75 ---------------------p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ 106 (281)
..+...|..+...|.+.|+.++|+..|++.+.
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12444566666666666777777777766655
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.40 E-value=0.012 Score=55.68 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--cCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAK--IKQ-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH------- 77 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--~~p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~------- 77 (281)
+.+...|+++.-.+.|+++++.|+.|+.++. .++ ....++..+|..+-++++|++|+-+..+|..+-...
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 4556688899999999999999999999865 222 346778889999999999999999988887764221
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 78 ---TGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 78 ---~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
.-++|.++.+|..+|.+..|.++.+.+.++
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 236777788888888888888777777665
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.39 E-value=0.016 Score=54.86 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKI-------KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD------ 74 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~-------~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~------ 74 (281)
+++..+|..+-..+||++|+-+..+|+.+... .-....+.|.++.++..+|.+-.|.++|+.+.++.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 45667888889999999999999999888651 11346677889999999999999999999997764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491 75 YNHTGALMLRAQTLVTLKEYNSALFDVNRLIELN 108 (281)
Q Consensus 75 p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld 108 (281)
+-++.++.-+|.+|...|+.+.|..-|+.|....
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 3456788999999999999999999999998764
No 242
>PRK10941 hypothetical protein; Provisional
Probab=96.36 E-value=0.052 Score=49.66 Aligned_cols=76 Identities=18% Similarity=0.063 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491 10 KIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL 88 (281)
Q Consensus 10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~ 88 (281)
+.+.-..+.+.++|..|+.+.+..+.+ .|.++.-+.-||.+|.++|.+..|+.+++.-++..|+.+.+...+.++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l---~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF---DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 345667889999999999999999999 9999999999999999999999999999999999999998876665544
No 243
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.029 Score=51.10 Aligned_cols=81 Identities=21% Similarity=0.233 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491 44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKT 123 (281)
Q Consensus 44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~ 123 (281)
.....|+=.++++.+++..|..+..+.+.++|.++.-+--+|.+|.++|.+.-|+.++...++.-|+.+.+......+.+
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~ 260 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE 260 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44556677889999999999999999999999999999999999999999999999999999999999887776665544
Q ss_pred H
Q 023491 124 Q 124 (281)
Q Consensus 124 ~ 124 (281)
.
T Consensus 261 l 261 (269)
T COG2912 261 L 261 (269)
T ss_pred H
Confidence 3
No 244
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.062 Score=48.20 Aligned_cols=108 Identities=20% Similarity=0.197 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc---CcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcC------
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKI---KQQKIALHSNRAACYLK-LHDFKKAAEECTSVLELDY------ 75 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~---~p~~~~a~~nra~~~~k-lg~y~~Ai~~~~~al~i~p------ 75 (281)
++..-+..+.-+|+..+..+|+.++..+|.+... -..-+..+..+|-+|-. +.++++||.+|+.+-....
T Consensus 72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 4445555566667777999999999999988541 11223334556666643 5889999999999865532
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023491 76 NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEV 113 (281)
Q Consensus 76 ~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~ 113 (281)
.--+|+...|..-..+++|..|+..|+++....-+|.-
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 22368888898889999999999999998877655543
No 245
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.26 E-value=0.41 Score=40.42 Aligned_cols=113 Identities=15% Similarity=0.044 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ 86 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~ 86 (281)
...+++........++...+..++...--+ .|....+-..-|..+...|+|.+|+..++.+..-.|.++-+--.++.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVL---RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 456788889999999999999988887777 89999999999999999999999999999999989999988889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
|++.+|+..-=... ..+++.. .++.+..+...+...
T Consensus 87 CL~~~~D~~Wr~~A-~evle~~-~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 87 CLYALGDPSWRRYA-DEVLESG-ADPDARALVRALLAR 122 (160)
T ss_pred HHHHcCChHHHHHH-HHHHhcC-CChHHHHHHHHHHHh
Confidence 99999986543332 2344444 466666666555444
No 246
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.25 E-value=0.00095 Score=62.31 Aligned_cols=75 Identities=28% Similarity=0.266 Sum_probs=65.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 52 ACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 52 ~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
.-.+..|.++.||..|..+|.++|.....|-.+|.+++.+++...|+.+|..|++++|+...-..+.+...+.+.
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 344568889999999999999999999999999999999999999999999999999997766666665555554
No 247
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.21 E-value=0.13 Score=46.97 Aligned_cols=114 Identities=12% Similarity=0.021 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HH
Q 023491 5 AAPANKIERAHQLYR-DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT---GA 80 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~-~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~---~a 80 (281)
.+-..+...|..-+. .++...|...|+.++.. -+.+..++......+.++++...|...|++++..-+... ..
T Consensus 33 ~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~i 109 (280)
T PF05843_consen 33 CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKI 109 (280)
T ss_dssp S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHH
Confidence 345677777877666 67878899999999998 777788888888888999999999999999998766544 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491 81 LMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL 121 (281)
Q Consensus 81 ~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l 121 (281)
|-.....-...|++......+.++.++-|....+.....+.
T Consensus 110 w~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 110 WKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 66667788889999999999999999999977666554443
No 248
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.21 E-value=0.055 Score=46.32 Aligned_cols=99 Identities=14% Similarity=0.078 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CH----HHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN--HT----GAL 81 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~--~~----~a~ 81 (281)
..+..+|.-|++.|++..|++.|.++...+.........++++..+.+..+++..+...+.++-.+-.. ++ +.-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 467789999999999999999999998876655566888899999999999999999999888554322 22 234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ 106 (281)
...|..+...++|..|...|-.++.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 4457777888999999988866553
No 249
>PLN03077 Protein ECB2; Provisional
Probab=96.15 E-value=0.11 Score=54.64 Aligned_cols=111 Identities=10% Similarity=0.022 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD--YNHTGALML 83 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~--p~~~~a~~~ 83 (281)
+...|......+.+.|+.++|+.+|.+.+.. ...| +...|..+-.++.+.|.+++|...|....... ..+...|..
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVES-GVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 5556777888889999999999999987764 1133 34445556677888999999999999887433 235678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQA 119 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~ 119 (281)
+..+|.+.|++++|...+++. .+.|+......++.
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ 665 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLN 665 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHH
Confidence 999999999999999888764 35555443333333
No 250
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.12 E-value=0.12 Score=45.11 Aligned_cols=98 Identities=10% Similarity=-0.018 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491 5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR 84 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l 84 (281)
.++..+..+++..|..+++..|...+++.....+ .-..+...+-.|.+|.-+|.+..|...|+.++...| .+.+-.+.
T Consensus 122 ~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p-a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y 199 (251)
T COG4700 122 HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP-AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYY 199 (251)
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC-ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHH
Confidence 3678889999999999999999999999998732 223455566678888899999999999999999987 45556667
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 023491 85 AQTLVTLKEYNSALFDVNRL 104 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekA 104 (281)
+..+.++|+..+|...|...
T Consensus 200 ~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 200 AEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcchhHHHHHHHHH
Confidence 88899999888886665443
No 251
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.11 E-value=0.0081 Score=53.57 Aligned_cols=61 Identities=20% Similarity=0.185 Sum_probs=43.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023491 54 YLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVY 114 (281)
Q Consensus 54 ~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a 114 (281)
..+.++...|.+.|.+++.+.|.+...||++|....+.|++..|.+.|++.|+++|.+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 3456677777777777777777777777777777777777777777777777777765543
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.04 Score=49.71 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=75.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hcC
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLE----LDY 75 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~----i~p 75 (281)
+|..+..-..++...+...+.+.|+.+|++++.+...+. .-..++-..+..+.++..|.+|...+.+-.. .+.
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 577788888888888999999999999999988876333 3355566677788888899888877766432 222
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491 76 --NHTGALMLRAQTLVTLKEYNSALFDVNRLIELN 108 (281)
Q Consensus 76 --~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld 108 (281)
.-.+++...-.+|....+|..|..+|+.+.++.
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 222344444445555669999999998877763
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.06 E-value=0.078 Score=52.06 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQ--KIALHSNRAACYLKLHDFKKAAEECTSVLEL-DYNHTGALMLRA 85 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~--~~~a~~nra~~~~klg~y~~Ai~~~~~al~i-~p~~~~a~~~lg 85 (281)
+.+..|+|+.+.|+.++|++.|.+.++. .|. ...+++|+..|++.++.|.++...+.+-=.+ -|+.+...|..|
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke---~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA 337 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKE---FPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA 337 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhh---CCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 4457899999999999999999999987 443 5678999999999999999998777664222 244566666665
Q ss_pred HHHHH-cCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 023491 86 QTLVT-LKE---------------YNSALFDVNRLIELNPSSEVYQN 116 (281)
Q Consensus 86 ~a~~~-~g~---------------~~eAl~~~ekAL~ldP~~~~a~~ 116 (281)
...++ .++ -..|++.+.+|++.+|..+.+.-
T Consensus 338 LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 338 LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 54433 111 24578899999999998886643
No 254
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.97 E-value=0.11 Score=51.08 Aligned_cols=91 Identities=15% Similarity=0.072 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 023491 25 EALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKE-YNSALFDVNR 103 (281)
Q Consensus 25 eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~-~~eAl~~~ek 103 (281)
.-+.+|..|+.. -+.+..+|++......+.+.+.+....|.+++..+|+++..|..-|.-.+..+. .+.|.+.|.+
T Consensus 89 rIv~lyr~at~r---f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATNR---FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHh---cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 345668888887 566888888888777778889999999999999999999999999999888877 9999999999
Q ss_pred HHHhCCCCHHHHHHH
Q 023491 104 LIELNPSSEVYQNLQ 118 (281)
Q Consensus 104 AL~ldP~~~~a~~~l 118 (281)
+|+.+|+++.++...
T Consensus 166 gLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEY 180 (568)
T ss_pred HhhcCCCChHHHHHH
Confidence 999999998876543
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.97 E-value=0.27 Score=45.23 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cC--------
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL-DY-------- 75 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i-~p-------- 75 (281)
.+..+...+..+.+.|.+..|...+.++..... .....+.+.+..+..+...|+..+|+..+...+.. ..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 456788899999999999999999999887621 11226778888899999999999999999888771 11
Q ss_pred -------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 76 -------------------------NHTGALMLRAQTLVTL------KEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 76 -------------------------~~~~a~~~lg~a~~~~------g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
..+++++.+|...... +.+..++..|..++.++|.+..++...+.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 1125788888888888 889999999999999999998888887777666
Q ss_pred hhc
Q 023491 125 LSL 127 (281)
Q Consensus 125 l~~ 127 (281)
+-.
T Consensus 305 ~~~ 307 (352)
T PF02259_consen 305 LLE 307 (352)
T ss_pred HHH
Confidence 543
No 256
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.96 E-value=0.021 Score=56.99 Aligned_cols=99 Identities=17% Similarity=0.080 Sum_probs=84.5
Q ss_pred HHHHHH-HcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 023491 13 RAHQLY-RDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTL 91 (281)
Q Consensus 13 ~G~~~~-~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~ 91 (281)
.+..|. .+|...+|+.+|..++.+++.. ..-.+++.+|.+++++|...+|--.+..|+.-.+....-+|-+|+++.++
T Consensus 218 ~as~YWR~~G~~~~A~~Ca~~a~hf~~~h-~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml 296 (886)
T KOG4507|consen 218 MASFYWRIKGEPYQAVECAMRALHFSSRH-NKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAML 296 (886)
T ss_pred HHHHHHHHcCChhhhhHHHHHHhhhCCcc-cccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHH
Confidence 344443 4699999999999999985532 33456778999999999999999999999998888888899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 023491 92 KEYNSALFDVNRLIELNPSSE 112 (281)
Q Consensus 92 g~~~eAl~~~ekAL~ldP~~~ 112 (281)
|.|...+.+|..+++.+|...
T Consensus 297 ~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 297 GEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred hhhhhhhhhhhhhhccCcchh
Confidence 999999999999999999754
No 257
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=0.24 Score=45.26 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=83.1
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491 9 NKIERAHQLYR----DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR 84 (281)
Q Consensus 9 ~l~~~G~~~~~----~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l 84 (281)
.+.++|..+.+ .+.+..|.-.|+..-.. -+.++.+.+..|.|++.+|+|++|...+..+|..+++.+.++.|+
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 34445555544 24688888888887775 677888999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHH-HHHHHhCCCCHHHHH
Q 023491 85 AQTLVTLKEYNSALFDV-NRLIELNPSSEVYQN 116 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~-ekAL~ldP~~~~a~~ 116 (281)
-.+-...|.-.++...+ .+....+|..+-+..
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~ 280 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPFVKH 280 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchHHHH
Confidence 99988999887765544 555556777665443
No 258
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.76 E-value=0.06 Score=40.97 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 65 EECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 65 ~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
..++..+..+|++..+.|.+|.++...|+++.|+..+-.+++.+++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 3444445555555555555555555555555555555555554443
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.74 E-value=0.2 Score=46.14 Aligned_cols=105 Identities=21% Similarity=0.103 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hhh------------------------------cCcccHHHHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALS-VAK------------------------------IKQQKIALHSNRAACY 54 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~-~~~------------------------------~~p~~~~a~~nra~~~ 54 (281)
.+...++.+..+...|+..+|+..+...+. ... .....+.+++.+|.-.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 577888999999999999999999988887 211 0123356667777666
Q ss_pred HHc------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhCCC
Q 023491 55 LKL------HDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKE-----------------YNSALFDVNRLIELNPS 110 (281)
Q Consensus 55 ~kl------g~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~-----------------~~eAl~~~ekAL~ldP~ 110 (281)
..+ +.++.++..|..++.++|...++|+.+|..+..+=. ...|+..|-+|+.+.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 667 888999999999999999999999999998766522 24589999999999887
No 260
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.68 E-value=0.017 Score=56.47 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hhh--------------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023491 10 KIERAHQLYRDGRYEEALGFYTEALS-VAK--------------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD 74 (281)
Q Consensus 10 l~~~G~~~~~~gdy~eAl~~y~~aL~-~~~--------------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~ 74 (281)
+.++|..+|+.|.|..++-+|.+||+ .+. .......+.||.|..|+..|+.-.|.++|.++....
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 35789999999999999999999996 221 222456788999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc
Q 023491 75 YNHTGALMLRAQTLVTL 91 (281)
Q Consensus 75 p~~~~a~~~lg~a~~~~ 91 (281)
..+++.|+++|.|.+..
T Consensus 366 h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 366 HRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcCcHHHHHHHHHHHHH
Confidence 99999999999987654
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.58 E-value=0.23 Score=48.82 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 023491 44 IALHSNRAACYLKLHDFKKAAEECTSVLELDYN--HTGALMLRAQTLVTLKEYNSALFDVNRLIEL-NPSSEVYQNLQAR 120 (281)
Q Consensus 44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~--~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l-dP~~~~a~~~l~~ 120 (281)
..+...+|.|..++|+.++|++.+..+++..|. +..++++|-.++..++.|.++...+.+.=.+ -|..+.+-...+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 445678999999999999999999999988774 6679999999999999999999998886443 2455554444444
Q ss_pred H
Q 023491 121 L 121 (281)
Q Consensus 121 l 121 (281)
+
T Consensus 339 L 339 (539)
T PF04184_consen 339 L 339 (539)
T ss_pred H
Confidence 4
No 262
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.54 E-value=0.035 Score=34.72 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 45 ALHSNRAACYLKLHDFKKAAEECTSVLEL 73 (281)
Q Consensus 45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i 73 (281)
.++.++|.+|+.+|+|.+|+..+.+++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 44566666666666666666666666554
No 263
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.50 E-value=0.093 Score=39.04 Aligned_cols=61 Identities=13% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECT 68 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~ 68 (281)
...++.|..+|...+..+|+..++.+|......+..+.++-.+..+|+..|+|.+++.+.-
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555533333334444444445555555555444443
No 264
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.45 E-value=0.19 Score=49.28 Aligned_cols=107 Identities=13% Similarity=0.079 Sum_probs=58.7
Q ss_pred HcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 023491 19 RDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSA 97 (281)
Q Consensus 19 ~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eA 97 (281)
...+.+.+...|..+|.++| ..-..+.+|+..|....++.+...|...+..||-..|.+ +.+-..-.+-.++++++..
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC 456 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence 34566666666666666654 122334555555555556666666666666666655532 2222222333455566666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 98 LFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 98 l~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
...|++.|+..|.+..++...+.+...|+
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLG 485 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhh
Confidence 66666666666666666665555555544
No 265
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.44 E-value=0.05 Score=50.66 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491 11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT 87 (281)
Q Consensus 11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a 87 (281)
...|....+.|..+.|..+|.-|+.+ .|.++.++..+|...-..++.-+|-.+|.+|+.+.|.+.+++.+++..
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlal---aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALAL---APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhc---CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34566778899999999999999999 999999999999998888999999999999999999999999998754
No 266
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.061 Score=48.63 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGA 80 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a 80 (281)
.-.+.+.+.|++..|+|-+++++-...|.. +|.+..+||.||.++...-+..+|..+|.++|+++|.-..+
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~---~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRH---HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 345678899999999999999999999998 99999999999999999999999999999999999965443
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.34 E-value=0.31 Score=41.18 Aligned_cols=82 Identities=16% Similarity=0.039 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
..+..+..+-++.++.+.+...+..+--+.|..+..-+.-|.+++..|+|.+|+..|+.+..-.|..+-...+++.+...
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34555677777889999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hh
Q 023491 125 LS 126 (281)
Q Consensus 125 l~ 126 (281)
++
T Consensus 91 ~~ 92 (160)
T PF09613_consen 91 LG 92 (160)
T ss_pred cC
Confidence 54
No 268
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.31 E-value=0.047 Score=34.08 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 78 TGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
..++.++|.+|..+|++.+|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457899999999999999999999999876
No 269
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.29 E-value=0.14 Score=38.93 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 80 ALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 80 a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
+++++|.++...|++++|+..+++|+.+
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554
No 270
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.28 E-value=0.22 Score=37.90 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491 27 LGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH 77 (281)
Q Consensus 27 l~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~ 77 (281)
+..+.+.+.. +|.+..+.+.+|.+++..|+++.|+..+-.+++.++.+
T Consensus 8 ~~al~~~~a~---~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAA---NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHH---STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4567778887 99999999999999999999999999999999998876
No 271
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.24 E-value=0.17 Score=41.66 Aligned_cols=83 Identities=17% Similarity=0.183 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 023491 6 APANKIERAHQLYRDG---RYEEALGFYTEALSVAKIKQ-QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGAL 81 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~g---dy~eAl~~y~~aL~~~~~~p-~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~ 81 (281)
+.+..++.+-++.+.. +-.+-+.+++..+.. . +| ..-.+.|.+|..++++++|+.++.++...|+..|+|.++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-A-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-c-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4566777787777765 456788889988862 1 33 3456677799999999999999999999999999999886
Q ss_pred HHHHHHHHH
Q 023491 82 MLRAQTLVT 90 (281)
Q Consensus 82 ~~lg~a~~~ 90 (281)
-+.-.+.-+
T Consensus 109 ~Lk~~ied~ 117 (149)
T KOG3364|consen 109 ELKETIEDK 117 (149)
T ss_pred HHHHHHHHH
Confidence 665544433
No 272
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.20 E-value=0.12 Score=39.35 Aligned_cols=60 Identities=20% Similarity=0.191 Sum_probs=49.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQ------QKIALHSNRAACYLKLHDFKKAAEECTSVLE 72 (281)
Q Consensus 13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p------~~~~a~~nra~~~~klg~y~~Ai~~~~~al~ 72 (281)
.-...++.|+|..|++.+.+......... ....+.+++|.++...|++++|+..++.+++
T Consensus 4 ~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 4 RYLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34467889999999999999998865222 2356788999999999999999999999965
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.31 Score=46.00 Aligned_cols=109 Identities=12% Similarity=0.031 Sum_probs=74.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCC---HHHHHHHHHHH
Q 023491 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL-DYNH---TGALMLRAQTL 88 (281)
Q Consensus 13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i-~p~~---~~a~~~lg~a~ 88 (281)
.+...+-+|.+.+|...+.+.|.- .|.+..++..--.+++-+|+.......++++|-. +++- .-..-.++..+
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d---~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDD---YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHh---CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 455567778888888888888876 6766666666666777777777777777777655 4333 22333445666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 89 VTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 89 ~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
...|-|.+|.+.-.+++++++.+.=+...++.+...
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem 221 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM 221 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh
Confidence 777777777777777777777766665555555544
No 274
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.92 E-value=0.21 Score=53.07 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=86.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL----H---DFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl----g---~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
...+++..+.|++|+..|.+....+|....--.+.+..|.+++.. | .|.+|+..|+++ ...+.-+--|+..|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 456788899999999999999888775556677888888877652 2 477788777765 22334455677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
.+|.++|+|.+-+++|.-|++.-|..+.+-.+...+-..+
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL 599 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 8999999999999999999999999888777766655443
No 275
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.54 Score=47.10 Aligned_cols=110 Identities=16% Similarity=-0.016 Sum_probs=84.7
Q ss_pred CCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhcCCCHHH
Q 023491 4 PAAPANKIER--AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTS-VLELDYNHTGA 80 (281)
Q Consensus 4 P~~a~~l~~~--G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~-al~i~p~~~~a 80 (281)
+.+...+... .......++...|+-.+..++.. ++..+.++.++|.++...|....++..+.. +....|.+...
T Consensus 62 ~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~ 138 (620)
T COG3914 62 DVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV---NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEF 138 (620)
T ss_pred CCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc---CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHH
Confidence 3444443333 34444556777778888888888 999999999999999888877777766665 78888888876
Q ss_pred HHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023491 81 LMLR------AQTLVTLKEYNSALFDVNRLIELNPSSEVYQN 116 (281)
Q Consensus 81 ~~~l------g~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~ 116 (281)
...+ |..+..+|+..++...+++++.+.|.++.+..
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 139 LGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred HhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 5555 99999999999999999999999998854433
No 276
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=0.2 Score=47.30 Aligned_cols=95 Identities=8% Similarity=-0.071 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-hhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSV-AKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQT 87 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~-~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a 87 (281)
+++-.-..+|-+|....-...+.+.|-. .+.-|...-+.-.++.++...|-|++|.+...+++++++.+.-+...++.+
T Consensus 139 a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHV 218 (491)
T KOG2610|consen 139 AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHV 218 (491)
T ss_pred hhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHH
Confidence 3333445566667666666666666554 112233344445566677777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHH
Q 023491 88 LVTLKEYNSALFDVNR 103 (281)
Q Consensus 88 ~~~~g~~~eAl~~~ek 103 (281)
+...|++.++++.+.+
T Consensus 219 lem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 219 LEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHhcchhhhHHHHHHh
Confidence 7777776666666543
No 277
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.85 E-value=1.2 Score=40.28 Aligned_cols=110 Identities=15% Similarity=0.038 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhcCccc-HHHHHHHHHHHHHcC-------CHHHHHHHHHHH
Q 023491 3 SPAAPANKIERAHQLYR----DGRYEEALGFYTEALSVAKIKQQK-IALHSNRAACYLKLH-------DFKKAAEECTSV 70 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~----~gdy~eAl~~y~~aL~~~~~~p~~-~~a~~nra~~~~klg-------~y~~Ai~~~~~a 70 (281)
....+...+.+|..++. ..++.+|...|.++... .... ..+.+++|.+|..-. +...|+..|.++
T Consensus 105 ~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~---g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 105 ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL---GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA 181 (292)
T ss_pred hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence 34566677888888877 45999999999999987 4333 355788888887642 334788888888
Q ss_pred HHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491 71 LELDYNHTGALMLRAQTLVT----LKEYNSALFDVNRLIELNPSSEVYQNLQA 119 (281)
Q Consensus 71 l~i~p~~~~a~~~lg~a~~~----~g~~~eAl~~~ekAL~ldP~~~~a~~~l~ 119 (281)
-... +..+.+++|.+|.. ..++..|+.+|.++-+... .....++.
T Consensus 182 a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 182 AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 6655 88899999988755 3489999999999999876 55666665
No 278
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.64 E-value=0.066 Score=47.90 Aligned_cols=61 Identities=28% Similarity=0.248 Sum_probs=55.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 023491 15 HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT 78 (281)
Q Consensus 15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~ 78 (281)
......++...|.++|.+++.+ .|.....|+.+|....+.|+++.|...|+.+++++|...
T Consensus 3 ~~~~~~~D~~aaaely~qal~l---ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL---APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc---CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456789999999999999999 899999999999999999999999999999999998643
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.54 E-value=1.7 Score=39.53 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhc-----------CcccHHHHHHHHHHHHHcCCHHHHHH---HHHHHH
Q 023491 7 PANKIERAHQLYRDG-RYEEALGFYTEALSVAKI-----------KQQKIALHSNRAACYLKLHDFKKAAE---ECTSVL 71 (281)
Q Consensus 7 a~~l~~~G~~~~~~g-dy~eAl~~y~~aL~~~~~-----------~p~~~~a~~nra~~~~klg~y~~Ai~---~~~~al 71 (281)
+..+++-|...+..+ +|..|+..+++++.+++. ......++..++.+|+..+.++...+ ....+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 456789999999999 999999999999998531 12446677889999999888764433 333344
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhh
Q 023491 72 ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP-SSEVYQNLQARLKTQLS 126 (281)
Q Consensus 72 ~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP-~~~~a~~~l~~l~~~l~ 126 (281)
.-.|+.+..++..=.++.+.++.+.+...+.+++.--+ ........+..++....
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~ 170 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE 170 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh
Confidence 44577788776666666668888888888888888655 33444444444444433
No 280
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.52 E-value=0.55 Score=51.25 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHH
Q 023491 11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN--HTGALMLRAQTL 88 (281)
Q Consensus 11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~--~~~a~~~lg~a~ 88 (281)
..+...|-+.+.+++|.++|+..+.. -.+....|..+|..+++..+-+.|...+.+||.--|. |.+..-..|+.-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK---F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK---FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH---hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 34444455555566666666655554 2244555555666666666656666666666655554 555555555666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 023491 89 VTLKEYNSALFDVNRLIELNPSSEVYQNL 117 (281)
Q Consensus 89 ~~~g~~~eAl~~~ekAL~ldP~~~~a~~~ 117 (281)
++.|+-+.+...|+-.|.-.|.--.+|..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~V 1639 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSV 1639 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHH
Confidence 66666666666666666655554444443
No 281
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.41 E-value=1.9 Score=41.34 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHH
Q 023491 5 AAPANKIERAHQLYR---DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK---------LHDFKKAAEECTSVLE 72 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~---~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k---------lg~y~~Ai~~~~~al~ 72 (281)
....+.+..|.++.+ .|+.+.|+..+..++.. .....+..+.-+|.+|-. ...+++|+..|.++++
T Consensus 177 ~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~--~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 177 NQHNIKFQYAFALNRRNKPGDREKALQILLPVLES--DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 356677788989988 89999999999996554 255677778878877743 2248899999999999
Q ss_pred hcCCCHH---------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 73 LDYNHTG---------------------------------------------ALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 73 i~p~~~~---------------------------------------------a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
++++.-. .+-.++.+.+-.|+++.|++++++++.+
T Consensus 255 ~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 255 IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 8854220 1122233445568899999999999999
Q ss_pred CCCCHHHHHHHH
Q 023491 108 NPSSEVYQNLQA 119 (281)
Q Consensus 108 dP~~~~a~~~l~ 119 (281)
.|..=.....+.
T Consensus 335 ~~~~W~l~St~~ 346 (374)
T PF13281_consen 335 KPPAWELESTLE 346 (374)
T ss_pred CCcchhHHHHHH
Confidence 876433333333
No 282
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.32 E-value=0.23 Score=47.23 Aligned_cols=106 Identities=14% Similarity=0.110 Sum_probs=75.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--------------------------cCcccHHHHHHHHHHHH
Q 023491 2 ASPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK--------------------------IKQQKIALHSNRAACYL 55 (281)
Q Consensus 2 a~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--------------------------~~p~~~~a~~nra~~~~ 55 (281)
.+|-.+..+.+.+..+..+|++..|..+.++||-... -+.....+.+.....+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 3677888888888888888888888888888875532 11122344455666677
Q ss_pred HcCCHHHHHHHHHHHHHhcCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 56 KLHDFKKAAEECTSVLELDYN-HT-GALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 56 klg~y~~Ai~~~~~al~i~p~-~~-~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
+.|.+..|+++|+-++.++|. ++ .+++.+-....+.++|+--+..++.....
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Confidence 788888888888888888886 54 45666666667778888777777765543
No 283
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.29 E-value=0.21 Score=44.07 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=49.1
Q ss_pred HHcCCHHHHHHHHHHHHHhhhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 023491 18 YRDGRYEEALGFYTEALSVAKI---KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT-GALMLRAQ 86 (281)
Q Consensus 18 ~~~gdy~eAl~~y~~aL~~~~~---~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~-~a~~~lg~ 86 (281)
....-+..|+..|.+++..... .-....+.|.+|.+++++|++++|+.+|.++|.....+. ..+..+|.
T Consensus 136 ~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 136 NEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 3334456777778877765331 223477889999999999999999999999998765443 35555554
No 284
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.19 E-value=1 Score=49.25 Aligned_cols=114 Identities=18% Similarity=0.078 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
....|+..|..++++.+-+.|-.++.+||...|. ..+..+...-|..-|+.|+-+.+...|+..+..+|.....|.-..
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 4568999999999999999999999999999552 447888899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491 86 QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQAR 120 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~ 120 (281)
..-.+.|+..-+...|+|++.+.=.-..+.....+
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 99999999999999999999986544444444433
No 285
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.01 E-value=0.36 Score=47.09 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=58.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHh
Q 023491 50 RAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS----SEVYQNLQARLKTQL 125 (281)
Q Consensus 50 ra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~----~~~a~~~l~~l~~~l 125 (281)
=|..+|..|+|.+|.-....+.+++| ++.+|..+|.|++..++|.+|..++.. +-|+ +..++..+..+.+.+
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh~ 543 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKHL 543 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhh
Confidence 34556789999999999999999999 999999999999999999999988754 3333 334556666666655
Q ss_pred h
Q 023491 126 S 126 (281)
Q Consensus 126 ~ 126 (281)
.
T Consensus 544 ~ 544 (549)
T PF07079_consen 544 P 544 (549)
T ss_pred h
Confidence 4
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.98 E-value=1.9 Score=39.14 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CC
Q 023491 6 APANKIERAHQLYR-DGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLELD-----YN 76 (281)
Q Consensus 6 ~a~~l~~~G~~~~~-~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-----p~ 76 (281)
.+...+.++...|+ .++|++|..++.+|+...+.+. .-+.+|-..|.....+..+.++...|+++..+. |+
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 34455555555554 5899999999999986533222 224556677777778899999999999998764 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Q 023491 77 HTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS---SEVYQNLQARLKT 123 (281)
Q Consensus 77 ~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~---~~~a~~~l~~l~~ 123 (281)
.+..-...|.-.....+-+.|++.|++++.+--. ...+..+++.+-+
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 3333344444455667889999999998886433 3344444444443
No 287
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.91 E-value=0.35 Score=44.75 Aligned_cols=61 Identities=23% Similarity=0.116 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491 45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLI 105 (281)
Q Consensus 45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL 105 (281)
.++...|..|...|.+.+|++.+++++.++|-+-..++.+-++|..+|+--+|+..|++.-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444578889999999999999999999999999999999999999999999999887653
No 288
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=0.44 Score=43.52 Aligned_cols=74 Identities=24% Similarity=0.223 Sum_probs=65.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491 12 ERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL 88 (281)
Q Consensus 12 ~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~ 88 (281)
..=..+...+++..|+.+-.+.|.+ +|.++.-..-+|.+|.++|.+..|+.+++..++..|+.+.+-+.++...
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l---~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDL---NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhh---CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3445677889999999999999999 9999999999999999999999999999999999999998877766543
No 289
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.74 E-value=0.95 Score=37.85 Aligned_cols=110 Identities=12% Similarity=-0.009 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ 86 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~ 86 (281)
...+++.....+...+..++..++...--+ .|....+-..-|..+...|+|.+|+..++.+..-.+..+-+--.++.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVL---RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 345667777788889999988877766555 88888898999999999999999999999998888888888889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491 87 TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL 121 (281)
Q Consensus 87 a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l 121 (281)
|++.+|+-.-=.... .++..+ .++.+..+...+
T Consensus 87 CL~al~Dp~Wr~~A~-~~le~~-~~~~a~~Lv~al 119 (153)
T TIGR02561 87 CLNAKGDAEWHVHAD-EVLARD-ADADAVALVRAL 119 (153)
T ss_pred HHHhcCChHHHHHHH-HHHHhC-CCHhHHHHHHHH
Confidence 999999855433222 234443 445555544444
No 290
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.40 E-value=1.1 Score=42.92 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHhcCCCHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLK---LHDFKKAAEECTSV-LELDYNHTGA 80 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~k---lg~y~~Ai~~~~~a-l~i~p~~~~a 80 (281)
++....+.=..|-..++|+.-+.+.+..-.+.. .-+......+.+|.++-+ .|+.++|+..+..+ ..-.+.++..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 445555555667777888888888777555311 123456677888999988 99999999999995 4555678899
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCC
Q 023491 81 LMLRAQTLVTL---------KEYNSALFDVNRLIELNPSS 111 (281)
Q Consensus 81 ~~~lg~a~~~~---------g~~~eAl~~~ekAL~ldP~~ 111 (281)
|..+|.+|-.+ ..+..|+.+|.++.+++|+.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 99999988553 24789999999999999753
No 291
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.35 E-value=1.6 Score=43.14 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--------
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH-------- 77 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~-------- 77 (281)
.+..+.-+|.....-+.|+.|..+|..|+++.......+-+..|+|..|++.|+-+.--+.++. +.|.+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQR 442 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHH
Confidence 5667778888888889999999999999998543444566678899999998775543333333 34432
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491 78 --TGALMLRAQTLVTLKEYNSALFDVNRLIELN 108 (281)
Q Consensus 78 --~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld 108 (281)
..++|..|...+..+++.+|...+.+.|+..
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 2478889999999999999999999999986
No 292
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.22 E-value=0.15 Score=32.50 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 79 GALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
.+|..||.+.+..++|..|+.+|++||.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788888888899999999999888876
No 293
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.00 E-value=0.98 Score=33.65 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 47 HSNRAACYLKLHDFKKAAEECTSVLELDYNHTG---ALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~---a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
....|.-+|...+..+|+..+.++++.-++... ++-.+..+|+.+|+|++++++--+-+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888999999999999999999877665 4555667899999999999886655544
No 294
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.95 E-value=0.37 Score=43.04 Aligned_cols=62 Identities=10% Similarity=-0.054 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 63 AAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 63 Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
|+.+|..|+.+.|.+...|..+|.++...|+.-.|+-+|-|++-..-..+.+..++..+-..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777777777765544445555555555444
No 295
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.87 E-value=0.65 Score=36.83 Aligned_cols=70 Identities=19% Similarity=0.112 Sum_probs=56.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 023491 50 RAACYLKLHDFKKAAEECTSVLELDYNHT---GALMLRAQTLVTLKE-----------YNSALFDVNRLIELNPSSEVYQ 115 (281)
Q Consensus 50 ra~~~~klg~y~~Ai~~~~~al~i~p~~~---~a~~~lg~a~~~~g~-----------~~eAl~~~ekAL~ldP~~~~a~ 115 (281)
+|..++..|++-+|++..+.++..+.++. -.+..-|.+++.+.. +..|+.+|.++..+.|..+...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57788999999999999999999988765 455666888877643 6789999999999999875554
Q ss_pred HHHH
Q 023491 116 NLQA 119 (281)
Q Consensus 116 ~~l~ 119 (281)
..++
T Consensus 82 ~~la 85 (111)
T PF04781_consen 82 FELA 85 (111)
T ss_pred HHHH
Confidence 4443
No 296
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=1.4 Score=42.54 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc--C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhcCCCHHHHH
Q 023491 10 KIERAHQLYRDGRYEEALGFYTEALSVAKI--K-QQKIALHSNRAACYLKLHDFKKAAEECTSVL----ELDYNHTGALM 82 (281)
Q Consensus 10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~--~-p~~~~a~~nra~~~~klg~y~~Ai~~~~~al----~i~p~~~~a~~ 82 (281)
++-....+-..|+...-...+...+..... + ...+.+.+.+-.+|+..+.|+.|-....++. ..+...++.+|
T Consensus 172 ~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~y 251 (493)
T KOG2581|consen 172 YFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLY 251 (493)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHH
Confidence 333444444455555555555555554331 2 2335566677788999999999988887764 11224567899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023491 83 LRAQTLVTLKEYNSALFDVNRLIELNPSSE 112 (281)
Q Consensus 83 ~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~ 112 (281)
++|.+..-.++|..|..+|-.|+...|...
T Consensus 252 Y~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 252 YLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 999999999999999999999999999744
No 297
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.64 E-value=1.8 Score=43.50 Aligned_cols=105 Identities=16% Similarity=0.094 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCHHH
Q 023491 9 NKIERAHQLYRDG-----RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH---DFKKAAEECTSVLELDYNHTGA 80 (281)
Q Consensus 9 ~l~~~G~~~~~~g-----dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg---~y~~Ai~~~~~al~i~p~~~~a 80 (281)
+....|.+|++.. ++..|+.+|.++... ....+.+.+|.|++.-. ++..|..+|..|.. ..+..+
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-----g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A 362 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-----GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILA 362 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-----CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHH
Confidence 3456777787743 788899999999886 34566777888888755 67899999988854 358889
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023491 81 LMLRAQTLVT----LKEYNSALFDVNRLIELNPSSEVYQNLQARLK 122 (281)
Q Consensus 81 ~~~lg~a~~~----~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~ 122 (281)
++++|.||.. ..+...|..+|.++-+.+ +..+...+..+.
T Consensus 363 ~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 363 IYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY 406 (552)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence 9999998864 357899999999999887 334334443333
No 298
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.51 E-value=2.1 Score=43.10 Aligned_cols=116 Identities=16% Similarity=0.020 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHh
Q 023491 6 APANKIERAHQLYRD-----GRYEEALGFYTEALSVAK--IKQQKIALHSNRAACYLKLH-----DFKKAAEECTSVLEL 73 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~-----gdy~eAl~~y~~aL~~~~--~~p~~~~a~~nra~~~~klg-----~y~~Ai~~~~~al~i 73 (281)
++......|.+++.- ++...|+.+|..++.... ..-....+.+.+|.||++.. ++..|+..|.++-..
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 455556667777654 699999999999987100 01114557888999999854 788899999888654
Q ss_pred cCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 74 DYNHTGALMLRAQTLVTLK---EYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 74 ~p~~~~a~~~lg~a~~~~g---~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
.++.+.|++|.++..-. ++..|..+|..|... ++..+...++.|...-
T Consensus 323 --g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 323 --GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred --CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 47788899999987765 678999999988765 5566666666665543
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.49 E-value=3.2 Score=37.74 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=72.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhh-hcCc----ccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----cC---CC------
Q 023491 17 LYRDGRYEEALGFYTEALSVA-KIKQ----QKIALHSNRAACYLKLH-DFKKAAEECTSVLEL----DY---NH------ 77 (281)
Q Consensus 17 ~~~~gdy~eAl~~y~~aL~~~-~~~p----~~~~a~~nra~~~~klg-~y~~Ai~~~~~al~i----~p---~~------ 77 (281)
+.+.|+++.|..+|.++-.+. ...| ..+..+|+.|...+..+ +|..|+.++++++.+ .. .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999987764 2233 34677899999999999 999999999999888 21 11
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCCHHHH
Q 023491 78 -TGALMLRAQTLVTLKEYNSALF---DVNRLIELNPSSEVYQ 115 (281)
Q Consensus 78 -~~a~~~lg~a~~~~g~~~eAl~---~~ekAL~ldP~~~~a~ 115 (281)
..++..++.+|...+.++...+ .++.+-.-.|+.+.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 2478889999999888655444 4444444456655555
No 300
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.45 E-value=0.49 Score=29.73 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 023491 79 GALMLRAQTLVTLKEYNSALFD--VNRLIELNPS 110 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~--~ekAL~ldP~ 110 (281)
+.++.+|..++.+|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3456666666666666666666 3355555554
No 301
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.43 E-value=2.5 Score=40.77 Aligned_cols=96 Identities=16% Similarity=0.071 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIAL-HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a-~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
+-++.-.++..+..|+|+.|...|+-.+. +|..-.+ +..+-..-.++|.++.|+.+...+-...|.-.-++...-
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 44566778899999999999999998877 5543322 222223345799999999999999999998888887777
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 023491 86 QTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 86 ~a~~~~g~~~eAl~~~ekAL~ 106 (281)
...+..|+|+.|++.+.....
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHH
Confidence 788999999999999865443
No 302
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.42 E-value=3.6 Score=37.92 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=61.6
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 41 QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 41 p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
.....++..++..+...|+++.++..+.+.+..+|-+-..|..+-.+|+..|+...|+..|+++-.+
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3567788889999999999999999999999999999999999999999999999999999887664
No 303
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.38 E-value=0.82 Score=46.40 Aligned_cols=72 Identities=14% Similarity=0.031 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491 47 HSNRAACYLKLHDFKKAAEECTSVLELDY------NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118 (281)
Q Consensus 47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p------~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l 118 (281)
+-|-|.-+|+..+|..+++.|...++.-+ .+++....++.||..+.+++.|++.++.|-+.+|.+.-.+...
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34578889999999999999999987654 4567888999999999999999999999999999887655544
No 304
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.30 E-value=1.9 Score=36.05 Aligned_cols=80 Identities=15% Similarity=0.003 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 47 HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+.....+-+...+.+++...+..+--+.|+.+..-..-|.+++..|+|.+|+..|+.+..-.+..+-...+++.+...++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444555568999999999988888899999999999999999999999999999999888888988899988887764
No 305
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.71 E-value=1.1 Score=43.26 Aligned_cols=97 Identities=12% Similarity=0.046 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----C----CCHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD----Y----NHTG 79 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~----p----~~~~ 79 (281)
.++.+.|.-|...|+++.|+.+|.++-.+++..-..+..+.|+-.+-.-+|+|-.......+|...- . -.++
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3566788889999999999999999888877667778888888888888999999888888886651 0 1234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491 80 ALMLRAQTLVTLKEYNSALFDVNRL 104 (281)
Q Consensus 80 a~~~lg~a~~~~g~~~eAl~~~ekA 104 (281)
....-|.+++.+++|..|.+.|-.+
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5566677778888999999988544
No 306
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.34 E-value=4 Score=38.10 Aligned_cols=101 Identities=13% Similarity=-0.063 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGR------------YEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gd------------y~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a 70 (281)
+|.+.+.|+......-..-. .+..+..|++||.. +|.+..++..+-.+..+..+-+....-++++
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~---np~~~~L~l~~l~~~~~~~~~~~l~~~we~~ 91 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH---NPDSERLLLGYLEEGEKVWDSEKLAKKWEEL 91 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 56666666655533332211 23445556666665 6666666555555555666666666666666
Q ss_pred HHhcCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHH
Q 023491 71 LELDYNHTGALMLRAQTL---VTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 71 l~i~p~~~~a~~~lg~a~---~~~g~~~eAl~~~ekAL~ 106 (281)
+..+|.+...|...-... +..-.+...+..|.+||.
T Consensus 92 l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 92 LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 666666555443332211 122235555555555553
No 307
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.30 E-value=1.6 Score=35.39 Aligned_cols=67 Identities=25% Similarity=0.153 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----cCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK----IKQ----QKIALHSNRAACYLKLHDFKKAAEECTSVLEL 73 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~----~~p----~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i 73 (281)
+-.+--++..+...|+|++++..-..+|.+++ .+. .=+.+.+++|.++--+|..++|+..|+.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44555677788899999999999999998875 222 23667799999999999999999999988553
No 308
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.17 E-value=9.1 Score=35.66 Aligned_cols=58 Identities=10% Similarity=-0.035 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 023491 60 FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL 117 (281)
Q Consensus 60 y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~ 117 (281)
.+..+..|++||+.+|++...+..+-.+..+...-.....-+++++..+|++..++..
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~ 104 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWRE 104 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 5667788888888888888877777777778888888888888888888887665544
No 309
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.96 E-value=0.48 Score=44.30 Aligned_cols=82 Identities=13% Similarity=0.006 Sum_probs=70.1
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491 40 KQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML-RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118 (281)
Q Consensus 40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~-lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l 118 (281)
-+.+..+|...+....+.|.|.+.-..|..++..+|.++..|.. -+.-+.-.+++..+.+.|.++|+++|.++.+|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 56778888888888888999999999999999999999998877 35557788999999999999999999999877654
Q ss_pred HHH
Q 023491 119 ARL 121 (281)
Q Consensus 119 ~~l 121 (281)
=++
T Consensus 183 fr~ 185 (435)
T COG5191 183 FRM 185 (435)
T ss_pred HHH
Confidence 433
No 310
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.85 E-value=0.31 Score=27.98 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 023491 80 ALMLRAQTLVTLKEYNSALFDVN 102 (281)
Q Consensus 80 a~~~lg~a~~~~g~~~eAl~~~e 102 (281)
+++.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666665543
No 311
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.70 E-value=0.4 Score=46.32 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=45.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH-H-------HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 49 NRAACYLKLHDFKKAAEECTSV-L-------ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 49 nra~~~~klg~y~~Ai~~~~~a-l-------~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
.+..++.-+|+|..|++.++.+ + ++-+.+...+|..|.+|..+++|..|++.|..+|-.
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666799999999987664 1 112345678999999999999999999999887753
No 312
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.57 E-value=2.6 Score=44.25 Aligned_cols=99 Identities=15% Similarity=0.022 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------h---h-------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSV-------A---K-------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~-------~---~-------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al 71 (281)
.+++.|..+-..++...|+++|+++--- . + ..-.+..+|.-.|..+-..|+.+.|+..|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 4667777777888999999999875211 0 0 233455777778888888999999999998873
Q ss_pred Hhc---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 72 ELD---------------------YNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 72 ~i~---------------------p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
... ..+..+-|.+|..|...|++.+|+..|.+|..+
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 321 344568899999999999999999998776544
No 313
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=90.12 E-value=7.1 Score=37.43 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHH--HHcCCHHHHHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACY--LKLHDFKKAAEECTSVLE 72 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~--~klg~y~~Ai~~~~~al~ 72 (281)
....++..+|..++|..|...|...+...+.... ...+..++.+| ...-+|.+|...++.++.
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4457889999999999999999999885221111 45566666555 457789999999987664
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.10 E-value=8 Score=33.54 Aligned_cols=98 Identities=8% Similarity=0.023 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhcCCCHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVL-ELDYNHTGALMLRAQ 86 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al-~i~p~~~~a~~~lg~ 86 (281)
+.+..|......|+-..|+..|..+-.-.+ .....-.+++.-|.+++..|.|+....-.+.+- ..+|-...+--.||.
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALgl 175 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGL 175 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhH
Confidence 345566677777788888888777655321 111223455666667777777777665554431 112223346667889
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 023491 87 TLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 87 a~~~~g~~~eAl~~~ekAL~ 106 (281)
+-++.|++..|...|.....
T Consensus 176 Aa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccchHHHHHHHHHHHc
Confidence 99999999999999988776
No 315
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=5.6 Score=36.51 Aligned_cols=104 Identities=12% Similarity=0.082 Sum_probs=86.9
Q ss_pred cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH-HH
Q 023491 20 DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLH-DFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYN-SA 97 (281)
Q Consensus 20 ~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg-~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~-eA 97 (281)
...-..|+.+-..+|.+ +|.+-.+|..|-.|+..++ ++.+-+.+++.++.-+|.+-.+|.-+-.+....|+.. .-
T Consensus 56 ~E~S~RAl~LT~d~i~l---NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRL---NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred cccCHHHHHHHHHHHHh---CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 45668899999999999 8888888877777776654 6888899999999999999999999999999999888 88
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 98 LFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 98 l~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
+.....+|..+..|=.++....-+.+.++
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~ 161 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFK 161 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHh
Confidence 89999999988887777766665555544
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.05 E-value=1.4 Score=38.54 Aligned_cols=72 Identities=24% Similarity=0.208 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHH
Q 023491 24 EEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN----HTGALMLRAQTLVTLKEYNSAL 98 (281)
Q Consensus 24 ~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~----~~~a~~~lg~a~~~~g~~~eAl 98 (281)
..|...|-++-.. ..-.++.+.+.+|..|. ..+-.+|+..+-++|++... ++..+..|+.+++++|+++.|-
T Consensus 123 ~~A~~~fL~~E~~--~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGT--PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCC--CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566666554332 12245777777776654 67899999999999988643 5789999999999999998884
No 317
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.85 E-value=1.4 Score=39.29 Aligned_cols=62 Identities=13% Similarity=-0.048 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 023491 26 ALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVT 90 (281)
Q Consensus 26 Al~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~ 90 (281)
|..+|.+|+.+ .|.....|+.+|.++...|+.-.|+-+|-+++-..-.++.+.-++...+.+
T Consensus 1 A~~~Y~~A~~l---~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL---LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH----TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh---CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999 999999999999999999999999999999998877788888898888887
No 318
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.71 E-value=1 Score=48.87 Aligned_cols=105 Identities=16% Similarity=0.116 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL----- 73 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i----- 73 (281)
|..+..+..++..+.+.+++++|+..-.++..+.. ..+.+...|.+++...+..++...|+..+.++..+
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 55678889999999999999999998877776654 56788899999999999999999999999888765
Q ss_pred ---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491 74 ---DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELN 108 (281)
Q Consensus 74 ---~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld 108 (281)
.|.-+...-+++.++..++.++.|+.+++.|+.+.
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 35555667888999999999999999999999864
No 319
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.69 E-value=7.9 Score=35.92 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=66.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HHHhh----------------hcCcccHHHHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTE---------------ALSVA----------------KIKQQKIALHSNRA 51 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~---------------aL~~~----------------~~~p~~~~a~~nra 51 (281)
.|.+..+....+.+++..|+.+.|...|.. .|.+. ..+|.+..+.+.+|
T Consensus 164 ~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA 243 (304)
T COG3118 164 APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALA 243 (304)
T ss_pred CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 466778888899999999999887777655 12221 16889999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCC
Q 023491 52 ACYLKLHDFKKAAEECTSVLELDYNH--TGALMLRAQTLVTLKE 93 (281)
Q Consensus 52 ~~~~klg~y~~Ai~~~~~al~i~p~~--~~a~~~lg~a~~~~g~ 93 (281)
..|...|+++.|+..+-..++.+... ..+--.+-.++..+|.
T Consensus 244 ~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 244 DQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 99999999999999998888876543 2333333334444443
No 320
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.27 E-value=0.92 Score=49.15 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHH------HHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----
Q 023491 5 AAPANKIERAHQLYRDGRYEEALG------FYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD---- 74 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~------~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~---- 74 (281)
..+....+.|......+.+.+|.+ ++.+.... .+|..+.+|..++..+.++|++++|+..+.++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~--~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~ 1007 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGV--LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL 1007 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhh--cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc
Confidence 356667788999999999998888 44443332 578889999999999999999999999998886543
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 75 ----YNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 75 ----p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
++....|.+++...+..++...|+..+.+++.+
T Consensus 1008 g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 345568999999999999999999999999887
No 321
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.20 E-value=4.3 Score=34.61 Aligned_cols=68 Identities=9% Similarity=0.063 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491 41 QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH---TGALMLRAQTLVTLKEYNSALFDVNRLIELN 108 (281)
Q Consensus 41 p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~---~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld 108 (281)
...-.++..+|..|++.|++..|++.|.++....... ...++++-.+.+..++|......+.++-.+-
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3446778899999999999999999999987765432 3467888888999999999999999988764
No 322
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=89.20 E-value=4.9 Score=35.97 Aligned_cols=83 Identities=17% Similarity=0.081 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcC
Q 023491 22 RYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN------HTGALMLRAQTLVTLK 92 (281)
Q Consensus 22 dy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~------~~~a~~~lg~a~~~~g 92 (281)
.-...|.++.+|+..+. .......+...+|.-|++.|+|++|+..|+.+...... ...++..+..|+..+|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 34456777777777654 12233555678999999999999999999999655432 1247778888999999
Q ss_pred CHHHHHHHHHHH
Q 023491 93 EYNSALFDVNRL 104 (281)
Q Consensus 93 ~~~eAl~~~ekA 104 (281)
+.+..+...-++
T Consensus 233 ~~~~~l~~~leL 244 (247)
T PF11817_consen 233 DVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHH
Confidence 988887765443
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.06 E-value=2.8 Score=37.55 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=27.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 54 YLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 54 ~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
+++.+.+.+||.....-++..|.+..+...+-+.|+-.|+|+.|+..++-+-++.|+
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 334444445555544444445544444444444444555555555555544444444
No 324
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.04 E-value=4.7 Score=40.61 Aligned_cols=90 Identities=16% Similarity=-0.004 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhhcCcccHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023491 26 ALGFYTEALSVAKIKQQKIALHSN--RAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNR 103 (281)
Q Consensus 26 Al~~y~~aL~~~~~~p~~~~a~~n--ra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ek 103 (281)
|+..|...+.+ ++.+..+++. ++..+..++....++-.+..++..+|.++.++.++|.++...|..-.++..+..
T Consensus 50 ~~~a~~~~~~~---~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 50 AIYALLLGIAI---NDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred HHHHHHccCcc---CCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55555555555 5555544322 688888899999999999999999999999999999999888887777666655
Q ss_pred -HHHhCCCCHHHHHHH
Q 023491 104 -LIELNPSSEVYQNLQ 118 (281)
Q Consensus 104 -AL~ldP~~~~a~~~l 118 (281)
++.+.|.+..+...+
T Consensus 127 ~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 127 IAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHHhcCcchHHHHhhH
Confidence 999999998877776
No 325
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.93 E-value=0.75 Score=29.31 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 46 LHSNRAACYLKLHDFKKAAEECTSVLEL 73 (281)
Q Consensus 46 a~~nra~~~~klg~y~~Ai~~~~~al~i 73 (281)
+|..+|-+.+..++|..|+.+|.+++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556777777777777777777777665
No 326
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.73 E-value=4.7 Score=41.21 Aligned_cols=104 Identities=15% Similarity=0.034 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQ---KIALHSNRAACYLKLHDFKKAAEECTSVLELDYN-HTGAL 81 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~---~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-~~~a~ 81 (281)
+++.-.+.|+.+-.+.-+.+|.+.|++.|.+++ -|. ....|+-....-+.....+.|...|++||...|. +++.+
T Consensus 510 TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKti 588 (835)
T KOG2047|consen 510 TPQIIINYAMFLEEHKYFEESFKAYERGISLFK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTI 588 (835)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 567778888888888899999999999998865 222 2344555555555666899999999999998874 45554
Q ss_pred HHH-HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 82 MLR-AQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 82 ~~l-g~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
|.+ |..-..-|--..|+..|++|...-+.
T Consensus 589 yLlYA~lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 589 YLLYAKLEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence 444 66667778888888888887665443
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.72 E-value=1.8 Score=28.50 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ 106 (281)
+.+|.+|+.+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5667777777777777777777773
No 328
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.62 E-value=4.1 Score=33.61 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCC
Q 023491 76 NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAP 129 (281)
Q Consensus 76 ~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~ 129 (281)
.-....+.++...+..|+|+.|+.....++..+|+|..++.+++.+.+.+....
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 455677888888888888888888888888888888888888888888776553
No 329
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.59 E-value=15 Score=37.34 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----C
Q 023491 6 APANKIERAHQLY-RDGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN----H 77 (281)
Q Consensus 6 ~a~~l~~~G~~~~-~~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~----~ 77 (281)
.+...+..|..++ ...+++.|..++.+++.++..+. ....+.+-++.++++.+... |+..+.++|+.... .
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4567788898888 67899999999999998865311 22455566788888888777 99999999987655 3
Q ss_pred HHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhcCC
Q 023491 78 TGALMLRA--QTLVTLKEYNSALFDVNRLIELN--PSSEVYQNLQARLKTQLSLAP 129 (281)
Q Consensus 78 ~~a~~~lg--~a~~~~g~~~eAl~~~ekAL~ld--P~~~~a~~~l~~l~~~l~~~~ 129 (281)
+...|++- ..+...+++..|+..++....+. .++..+......+...+....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~ 192 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR 192 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC
Confidence 33333333 22223379999999999999886 577777777776766665543
No 330
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.45 E-value=18 Score=32.45 Aligned_cols=95 Identities=17% Similarity=0.026 Sum_probs=72.7
Q ss_pred HHHHHHHHHHc-----C--CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCH
Q 023491 10 KIERAHQLYRD-----G--RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLK----LHDFKKAAEECTSVLELDYNHT 78 (281)
Q Consensus 10 l~~~G~~~~~~-----g--dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~k----lg~y~~Ai~~~~~al~i~p~~~ 78 (281)
.+..|..+..- - +...|+..|.++... . +..+.+++|.+|.. ..++.+|+.+|.++-+... .
T Consensus 151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~---~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~ 223 (292)
T COG0790 151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL---G--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--G 223 (292)
T ss_pred HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh---c--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--H
Confidence 45555555543 1 334788889888876 3 77888999988876 3489999999999988776 8
Q ss_pred HHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhCCCCH
Q 023491 79 GALMLRAQTLVTLK---------------EYNSALFDVNRLIELNPSSE 112 (281)
Q Consensus 79 ~a~~~lg~a~~~~g---------------~~~eAl~~~ekAL~ldP~~~ 112 (281)
.++++++ +++..| +...|+..+..+....+...
T Consensus 224 ~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 224 AACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred HHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 8999999 777666 88889999988888766543
No 331
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.36 E-value=1.8 Score=27.13 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhcCC
Q 023491 46 LHSNRAACYLKLHDFKKAAEE--CTSVLELDYN 76 (281)
Q Consensus 46 a~~nra~~~~klg~y~~Ai~~--~~~al~i~p~ 76 (281)
.++.+|..++..|+|++|+.. |.-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 355677777777777777777 3366555543
No 332
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.25 E-value=2.8 Score=38.64 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~ 72 (281)
.++..++..+...|+++.++..+++.+.. +|.+-.+|..+-.+|++.|+...|+..|.++-.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~---dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL---DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45677888889999999999999999999 999999999999999999999999999988744
No 333
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.19 E-value=2.3 Score=41.16 Aligned_cols=99 Identities=16% Similarity=0.120 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhh------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 023491 11 IERAHQLYRDGRYEEALGFYTEALSVAK------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLR 84 (281)
Q Consensus 11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~l 84 (281)
+-+...+.-.|||..|++..... .+.. --+....++|..|.||+-+++|.+|+..|..++-.-...-..++.+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~ 204 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR 204 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 34456667789999999885542 1110 1345678899999999999999999999999864321111111111
Q ss_pred HHHH-HHcCCHHHHHHHHHHHHHhCCC
Q 023491 85 AQTL-VTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 85 g~a~-~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
..-+ .-.+..+.....+--|+.+.|.
T Consensus 205 ~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 205 SYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred cchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 1111 1124455555666666666774
No 334
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=88.02 E-value=3.1 Score=44.49 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHH
Q 023491 22 RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLK-----EYNS 96 (281)
Q Consensus 22 dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g-----~~~e 96 (281)
.+.+|+.-|...-. .+-.+-=|+..|.+|.++|+|++-+++|..|++..|.++..-..+-.+-+++. .-..
T Consensus 534 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (932)
T PRK13184 534 DFTQALSEFSYLHG----GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRRE 609 (932)
T ss_pred HHHHHHHHHHHhcC----CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665555433 45556668999999999999999999999999999999976665555544443 3567
Q ss_pred HHHHHHHHHHhCCCCHH---HHHHHHHHHHHhh
Q 023491 97 ALFDVNRLIELNPSSEV---YQNLQARLKTQLS 126 (281)
Q Consensus 97 Al~~~ekAL~ldP~~~~---a~~~l~~l~~~l~ 126 (281)
|+..+--++...|.... -...+..++.+..
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (932)
T PRK13184 610 ALVFMLLALWIAPEKISSREEEKFLEILYHKQQ 642 (932)
T ss_pred HHHHHHHHHHhCcccccchHHHHHHHHHHhhcc
Confidence 78888889999997544 3444555554443
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.73 E-value=0.73 Score=26.37 Aligned_cols=24 Identities=17% Similarity=-0.025 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 023491 45 ALHSNRAACYLKLHDFKKAAEECT 68 (281)
Q Consensus 45 ~a~~nra~~~~klg~y~~Ai~~~~ 68 (281)
.+++++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777777766654
No 336
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.70 E-value=9.6 Score=33.39 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491 46 LHSNRAACYLKLHDFKKAAEECTSVLELDYN-HT--GALMLRAQTLVTLKEYNSALFDVNRL 104 (281)
Q Consensus 46 a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-~~--~a~~~lg~a~~~~g~~~eAl~~~ekA 104 (281)
+-+.+|..+...|++++|+..+..++..-.+ +. -+-+++|.++++.|++++|+..+...
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 3467888889999999999999999854433 22 35678899999999999999988643
No 337
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.60 E-value=2.5 Score=37.86 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al 71 (281)
.....+.|..++..|+|..|+.+|..+..... .......+...+..|++++|+.+..+..+-+++
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34556899999999999999999999976543 233556677888999999999999998887664
No 338
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.19 E-value=19 Score=36.41 Aligned_cols=102 Identities=20% Similarity=0.134 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh------------------cCcccHHHH---HHHHHHHHHcCCHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK------------------IKQQKIALH---SNRAACYLKLHDFK 61 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~------------------~~p~~~~a~---~nra~~~~klg~y~ 61 (281)
+|.....+++.+..+-.+|+...|..+..++|.... ..+.+-.+| +..-..+-+.|-+.
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence 688899999999999999999999999999987753 222222222 22223344689999
Q ss_pred HHHHHHHHHHHhcCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Q 023491 62 KAAEECTSVLELDYN-HTGA-LMLRAQTLVTLKEYNSALFDVNRL 104 (281)
Q Consensus 62 ~Ai~~~~~al~i~p~-~~~a-~~~lg~a~~~~g~~~eAl~~~ekA 104 (281)
.|.++|.-++.++|. ++-+ ++.+-....+..+|+--+..++..
T Consensus 360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999997 6643 333333445556666666555544
No 339
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.61 E-value=7.5 Score=38.59 Aligned_cols=95 Identities=22% Similarity=0.133 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhcC----cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCH--
Q 023491 7 PANKIERAHQLYR-DGRYEEALGFYTEALSVAKIK----QQKIALHSNRAACYLKLH-DFKKAAEECTSVLELDYNHT-- 78 (281)
Q Consensus 7 a~~l~~~G~~~~~-~gdy~eAl~~y~~aL~~~~~~----p~~~~a~~nra~~~~klg-~y~~Ai~~~~~al~i~p~~~-- 78 (281)
+..+.+.|..++. .++.+.|..++++|..+...- .....++..++.+|.+.. .+..|...++++|++...++
T Consensus 46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w 125 (629)
T KOG2300|consen 46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW 125 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh
Confidence 4455677766654 578999999999998876422 344677888999998887 89999999999999987654
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHH
Q 023491 79 --GALMLRAQTLVTLKEYNSALFDV 101 (281)
Q Consensus 79 --~a~~~lg~a~~~~g~~~eAl~~~ 101 (281)
+.+|.+++++.-.+++..|+..+
T Consensus 126 sckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 126 SCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred hHHHHHHHHHHHhhhccchhHHHHH
Confidence 57888999999999999999875
No 340
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.95 E-value=13 Score=38.21 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---------cCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK---------IKQ------QKIALHSNRAACYLKLHDFKKAAEECTSVL 71 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~---------~~p------~~~~a~~nra~~~~klg~y~~Ai~~~~~al 71 (281)
+..|.+-|..-++..+++.|+.+..+|...-. ..| ....+|...+...-.+|-|+.....|.++|
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34555556556666666666666666655311 011 112233344444444566666666666666
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491 72 ELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109 (281)
Q Consensus 72 ~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP 109 (281)
.+.=-.+..-.|.|..+....-+++|.+.|++.+.|.+
T Consensus 505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 66655666666666666665566666666666555543
No 341
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=85.58 E-value=19 Score=34.94 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=67.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491 14 AHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL 88 (281)
Q Consensus 14 G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~ 88 (281)
-......|+|+.|+++........- .+...+.++.-.+... -.-+...|..+...++++.|+...+-..-+.+|
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAral 273 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARAL 273 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 3455678999999999877654311 1112223333233222 233577788888888999999888888888899
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCH
Q 023491 89 VTLKEYNSALFDVNRLIELNPSSE 112 (281)
Q Consensus 89 ~~~g~~~eAl~~~ekAL~ldP~~~ 112 (281)
++.|+..++-..++.+-+..|.-.
T Consensus 274 f~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 274 FRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HhccchhhhhhHHHHHHhcCCChH
Confidence 999999998888888888877533
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.48 E-value=7.1 Score=34.24 Aligned_cols=67 Identities=12% Similarity=-0.005 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhhcC
Q 023491 60 FKKAAEECTSVLELDY--NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS----SEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 60 y~~Ai~~~~~al~i~p--~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~----~~~a~~~l~~l~~~l~~~ 128 (281)
-..|...|-.+ +..+ +.+...+.+|..|. ..+-..|+..|.++|++... |+.+...++.+-..++..
T Consensus 122 d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 122 DQEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred cHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34566655443 2222 46777888887666 56889999999999998654 467777777776666544
No 343
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.18 E-value=5.9 Score=37.54 Aligned_cols=99 Identities=16% Similarity=0.061 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHH
Q 023491 22 RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL--DYNHTGALMLRAQTLVTLKEYNSALF 99 (281)
Q Consensus 22 dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i--~p~~~~a~~~lg~a~~~~g~~~eAl~ 99 (281)
+|..-..+|.-...+ .| .+.+-.|++.+.-+.--...++...+.+..- -..+.-.+-.+|..+.++|+..+|..
T Consensus 311 DW~~I~aLYdaL~~~---ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ 386 (415)
T COG4941 311 DWPAIDALYDALEQA---AP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARA 386 (415)
T ss_pred ChHHHHHHHHHHHHh---CC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHH
Confidence 555555566555554 22 3455677888877666667777776665443 12455577788999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 100 DVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 100 ~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
.|.+++.+.++..+...++.++-..
T Consensus 387 aydrAi~La~~~aer~~l~~r~~~l 411 (415)
T COG4941 387 AYDRAIALARNAAERAFLRQRLDRL 411 (415)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHh
Confidence 9999999998888877776665443
No 344
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.68 E-value=25 Score=35.70 Aligned_cols=94 Identities=15% Similarity=0.066 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC-----------------------cccHHHHHHHHHHHHHcCCHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIK-----------------------QQKIALHSNRAACYLKLHDFKKAAE 65 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~-----------------------p~~~~a~~nra~~~~klg~y~~Ai~ 65 (281)
.+.--|..+...+..+.|..++.++++..... -....+.+.++.+.+-++++..|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 34455777777777778888888887765310 1134456778888888999999999
Q ss_pred HHHHHHHhcC---------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023491 66 ECTSVLELDY---------NHTGALMLRAQTLVTLKEYNSALFDVN 102 (281)
Q Consensus 66 ~~~~al~i~p---------~~~~a~~~lg~a~~~~g~~~eAl~~~e 102 (281)
.+..+..... -.+..+|..|..+...|+.+.|+..|.
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 9988876532 136689999999999999999999998
No 345
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=84.66 E-value=13 Score=35.41 Aligned_cols=98 Identities=17% Similarity=0.098 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcc-c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----CHHHHH
Q 023491 10 KIERAHQLYRDGRYEEALGFYTEALSVAKIKQQ-K-IALHSNRAACYLKLHDFKKAAEECTSVLELDYN-----HTGALM 82 (281)
Q Consensus 10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~-~-~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~-----~~~a~~ 82 (281)
++.....+.++|.|..|++.-.-.+.+ +|. + ..+++.+=...++.++|+=-+..+......... -+...|
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsL---dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSL---DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhc---CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 445667788899999999999999998 655 4 334455556667889998888888776552211 335778
Q ss_pred HHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 023491 83 LRAQTLVTLKEY---------------NSALFDVNRLIELNPS 110 (281)
Q Consensus 83 ~lg~a~~~~g~~---------------~eAl~~~ekAL~ldP~ 110 (281)
.++.+++.+++- +.|...+.+|+...|.
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 899999999998 8999999999999884
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.59 E-value=3 Score=40.94 Aligned_cols=46 Identities=11% Similarity=0.006 Sum_probs=34.2
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491 55 LKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLI 105 (281)
Q Consensus 55 ~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL 105 (281)
+++|+++.|.+.+... ++...|-.||.+....|+++-|..+|+++-
T Consensus 329 l~lg~L~~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHCT-HHHHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 4566666666555444 577889999999999999999999887753
No 347
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=84.58 E-value=6.3 Score=38.77 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a 70 (281)
......|.-+|.+|+|.++.-+-.-..+. .| .+.+|.-+|.|++..++|.+|..++..+
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~i---aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKI---AP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh---CC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34456677889999999988766666666 77 7889999999999999999999998765
No 348
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.19 E-value=4 Score=33.73 Aligned_cols=51 Identities=25% Similarity=0.173 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 023491 45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYN 95 (281)
Q Consensus 45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~ 95 (281)
.....++...+..|+|.-|+..+..++..+|++..+...++.+|.++|.-.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 344567788888999999999999999999999999999999988887543
No 349
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=84.11 E-value=1.9 Score=40.45 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSN-RAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~n-ra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
|.++..|.+.++-..+.|.|..--..|.+++.. +|.+..+|.. -+.-++-.+++..|...|.++|+++++++..|+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k---hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK---HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 567888888888888999999999999999999 9999998865 445667889999999999999999999998665
Q ss_pred H
Q 023491 83 L 83 (281)
Q Consensus 83 ~ 83 (281)
.
T Consensus 181 e 181 (435)
T COG5191 181 E 181 (435)
T ss_pred H
Confidence 3
No 350
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=84.06 E-value=7.3 Score=28.68 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSV 36 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~ 36 (281)
+..+..+|..+=+.|+|.+|+.+|+.+|..
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445556666666667777776666666654
No 351
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.52 E-value=13 Score=37.00 Aligned_cols=74 Identities=9% Similarity=0.020 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCHHHH
Q 023491 5 AAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD-FKKAAEECTSVLELDYNHTGAL 81 (281)
Q Consensus 5 ~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~-y~~Ai~~~~~al~i~p~~~~a~ 81 (281)
.+...|.....-.-+.+.|.+-...|.+++.. +|.++.+|..-|.-.|..+. .+.|...+.++|+.+|+++..|
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~---Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK---HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 46667777776666777799999999999999 99999999988877777765 9999999999999999998754
No 352
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.49 E-value=7 Score=36.73 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=38.9
Q ss_pred CccCCCCCCCCCCCCccccccCCCcccccccccccccCCCCCCCCCCCCCccC--CCCCCC
Q 023491 183 EVKAPKTPGINGNSEPGIKQRAEPKRTNINEATALDHTSKKPTVQDSKGWQAI--PKPKGH 241 (281)
Q Consensus 183 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 241 (281)
..||...||+.-..+.++.-.++- .-++|-||-.+|-.-.-+-+-|-.| .-|+|-
T Consensus 121 sAIv~EKPNVkWsDVAGLE~AKeA----LKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGT 177 (439)
T KOG0739|consen 121 SAIVREKPNVKWSDVAGLEGAKEA----LKEAVILPIKFPQLFTGKRKPWRGILLYGPPGT 177 (439)
T ss_pred hhhhccCCCCchhhhccchhHHHH----HHhheeecccchhhhcCCCCcceeEEEeCCCCC
Confidence 578899999987777765544433 3457788888888777777778876 456653
No 353
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.44 E-value=3.5 Score=40.88 Aligned_cols=84 Identities=21% Similarity=0.196 Sum_probs=54.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 023491 15 HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEY 94 (281)
Q Consensus 15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~ 94 (281)
...+..|+...|......+|+. .|..+....-++.+...+|.|+.|..++..+=.+-.....+..-+-..++.+|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~---~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRN---QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHh---CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH
Confidence 3456678888888888888887 6666667777788888899999988888766443333333333333344445555
Q ss_pred HHHHHHH
Q 023491 95 NSALFDV 101 (281)
Q Consensus 95 ~eAl~~~ 101 (281)
+.|+..-
T Consensus 374 ~~a~s~a 380 (831)
T PRK15180 374 REALSTA 380 (831)
T ss_pred HHHHHHH
Confidence 5444433
No 354
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.81 E-value=9.3 Score=40.09 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVA 37 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~ 37 (281)
++.++..|.-+|..|+|++|...|-++|...
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 4566788999999999999999999998764
No 355
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.43 E-value=20 Score=34.75 Aligned_cols=108 Identities=18% Similarity=0.132 Sum_probs=87.3
Q ss_pred cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCC---
Q 023491 20 DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHD--FKKAAEECTSVLELDYNHTGALMLRAQTLVT-LKE--- 93 (281)
Q Consensus 20 ~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~--y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~-~g~--- 93 (281)
..-++.-+.+...+|.. +|..-.+|+.|..++.+.+. +..-+..|.++++++|.+..+|..+-.+... ...
T Consensus 88 ~~~ld~eL~~~~~~L~~---npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~ 164 (421)
T KOG0529|consen 88 QALLDEELKYVESALKV---NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL 164 (421)
T ss_pred HHhhHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence 33567777888888888 99999999999999988774 7889999999999999999988777555433 333
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcCCC
Q 023491 94 YNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLAPI 130 (281)
Q Consensus 94 ~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~~~ 130 (281)
..+-+.+..+++.-++.|=.++.....+...+-..+.
T Consensus 165 ~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~ 201 (421)
T KOG0529|consen 165 EKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEA 201 (421)
T ss_pred chhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccc
Confidence 6777888999999999998899988888776655544
No 356
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=81.90 E-value=0.91 Score=42.95 Aligned_cols=80 Identities=18% Similarity=0.040 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 023491 11 IERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVT 90 (281)
Q Consensus 11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~ 90 (281)
.+.+.+.++.+.|..|+..-..++.. ++....+++.++..++.+.+++.|++++..+....|++....-.+..+-..
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~~~~~~~---~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRTNEALRD---ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred cchHHhcccccCCCcceecccccccc---ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 45677788888888888887777776 888899999999999999999999999999999999988776666555444
Q ss_pred cCC
Q 023491 91 LKE 93 (281)
Q Consensus 91 ~g~ 93 (281)
..+
T Consensus 356 ~~~ 358 (372)
T KOG0546|consen 356 KKQ 358 (372)
T ss_pred HHH
Confidence 433
No 357
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.85 E-value=3.6 Score=39.20 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKA 63 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~A 63 (281)
+..++..|+.++.+++|..|...|..|..++. .+-.++.++|..|.++++++++..+
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~ 102 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQ 102 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999988743 2223445555555555555554443
No 358
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=81.19 E-value=12 Score=36.60 Aligned_cols=114 Identities=20% Similarity=0.285 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----C-cccHH--------HHHHHHHHH-HHcCC-----HHHHHHHHH
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKI----K-QQKIA--------LHSNRAACY-LKLHD-----FKKAAEECT 68 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~----~-p~~~~--------a~~nra~~~-~klg~-----y~~Ai~~~~ 68 (281)
...+..|-.++..|+|.+|+..|...|..++. + ..... --|.+|... +..+. .+.....++
T Consensus 205 ~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lE 284 (422)
T PF06957_consen 205 EERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLE 284 (422)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 34456889999999999999999999988651 1 10111 123333222 11222 112212222
Q ss_pred HH-----HHhcCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491 69 SV-----LELDYNHTGALMLRAQ-TLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL 121 (281)
Q Consensus 69 ~a-----l~i~p~~~~a~~~lg~-a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l 121 (281)
-+ ..+.|.|...-++.|. ..++.++|..|....+++|++.|....+......+
T Consensus 285 LAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil 343 (422)
T PF06957_consen 285 LAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKIL 343 (422)
T ss_dssp HHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22 1222333332233333 45778999999999999999999887665544433
No 359
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.16 E-value=10 Score=37.81 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
|..+....-.+...-..|+|+.|+.....+-.. -.....+.-.+-...+++|+++.|.....-.+.-.=..++.+--
T Consensus 320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~---~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~i 396 (831)
T PRK15180 320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI---IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTV 396 (831)
T ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh---hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheee
Confidence 334444445677777889999999888776665 22333444455667788999999999888887766667777666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSS 111 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~ 111 (281)
.|....++|-+++|+-.+.+++.++|..
T Consensus 397 aa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 397 AAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred ecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 6777788899999999999999998753
No 360
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.02 E-value=4.1 Score=40.76 Aligned_cols=71 Identities=20% Similarity=0.022 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491 4 PAAPANKIERAHQLYRD---GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH 77 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~---gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~ 77 (281)
|.....+-+++.++.++ |+--.|+.--..|+++ +|....+++.++.|+..++.+.+|+.+...+....|.+
T Consensus 405 ~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl---n~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 405 PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL---NPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC---ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 55666677788777775 4666777777788888 99999999999999999999999999998888877743
No 361
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.44 E-value=12 Score=36.69 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--------cCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAK--------IKQQKIALHSNRAACYLKLHDF----------KKAAEECTSV 70 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--------~~p~~~~a~~nra~~~~klg~y----------~~Ai~~~~~a 70 (281)
.+..+|..+++...|.+|+.++-.|-..+- .-.+.+.+-..+-.|||++++. ..|...|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 456889999999999999998877755431 2334455556677899988763 2233333222
Q ss_pred --------HHhc-CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 71 --------LELD-YNHT------GALMLRAQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 71 --------l~i~-p~~~------~a~~~lg~a~~~~g~~~eAl~~~ekAL~ 106 (281)
..+. +..+ +.++.-|.+.+..|+-.+|..+|+.+..
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1111 2222 2344559999999999999999987765
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.28 E-value=3.3 Score=27.20 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 47 HSNRAACYLKLHDFKKAAEECTSVLE 72 (281)
Q Consensus 47 ~~nra~~~~klg~y~~Ai~~~~~al~ 72 (281)
.+++|.+|..+|+++.|...+..++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36799999999999999999999985
No 363
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=80.22 E-value=11 Score=30.67 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIK------------QQKIALHSNRAACYLKLHDFKKAAEECTSV 70 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~------------p~~~~a~~nra~~~~klg~y~~Ai~~~~~a 70 (281)
.+...|..+++.+++-.++-+|++|+.++..- .......-|+|..|..+|+-+-.++++.-|
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 45678999999999999999999999885410 011233456777777788877777777544
No 364
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.95 E-value=13 Score=32.36 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=57.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 023491 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVT 90 (281)
Q Consensus 13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~ 90 (281)
.|-.+.-.|-|+......+..-. +.+|....+.--||.+-++.|+|.+|.+.|..+.. +...++...+++++...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~--d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAG--DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccC--CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 34556667888877665544322 24677888899999999999999999999998766 66778888888887664
No 365
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=79.64 E-value=18 Score=30.04 Aligned_cols=52 Identities=12% Similarity=-0.066 Sum_probs=34.4
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 56 KLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 56 klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
+.|+-+.--..+..+++-+..++..++.+|.+|.++|...+|-..+.+|.+-
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3444444444444555445678899999999999999999999999999875
No 366
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=79.19 E-value=12 Score=36.72 Aligned_cols=81 Identities=21% Similarity=0.125 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcC--------CCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 49 NRAACYLKLHDFKKAAEECTSVLELDY--------NHT----------GALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 49 nra~~~~klg~y~~Ai~~~~~al~i~p--------~~~----------~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
.=|..+|+++.|..|+.-|..+|++.. ..+ -.--.+..||.++++-..|+....+.+-++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 345566667777666666666665531 111 12346788999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCC
Q 023491 111 SEVYQNLQARLKTQLSLAP 129 (281)
Q Consensus 111 ~~~a~~~l~~l~~~l~~~~ 129 (281)
...-.-+.+.+-+.|.+..
T Consensus 261 ~frnHLrqAavfR~LeRy~ 279 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYS 279 (569)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 8777777777777776554
No 367
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.18 E-value=27 Score=35.40 Aligned_cols=94 Identities=21% Similarity=0.124 Sum_probs=72.6
Q ss_pred cCCHHHHHHHHHHHHHhhh---------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cC----------
Q 023491 20 DGRYEEALGFYTEALSVAK---------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL-----DY---------- 75 (281)
Q Consensus 20 ~gdy~eAl~~y~~aL~~~~---------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i-----~p---------- 75 (281)
...|.+|-..|.-++...+ ..|.+...++.+|.+...+|+.+.|.....++|=. .|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3567888888887776543 56888999999999999999999999888887632 11
Q ss_pred ------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Q 023491 76 ------NH---TGALMLRAQTLVTLKEYNSALFDVNRLIELNPS-SEV 113 (281)
Q Consensus 76 ------~~---~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~-~~~ 113 (281)
.| ..++|+.-.-+.+.|.+..|++++.-.+.++|. ++-
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl 378 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPL 378 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCch
Confidence 11 125555566777899999999999999999998 553
No 368
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=78.66 E-value=10 Score=27.87 Aligned_cols=31 Identities=35% Similarity=0.632 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSV 36 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~ 36 (281)
.+..++.+|..+=..|+|.+|+.+|..+|..
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556778888888899999999999998886
No 369
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=78.09 E-value=14 Score=26.12 Aligned_cols=30 Identities=37% Similarity=0.553 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSV 36 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~ 36 (281)
+-.+...|..+=..|+|.+|+.+|..++..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456677888888899999999999999886
No 370
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.86 E-value=36 Score=31.39 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023491 22 RYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFK-KAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFD 100 (281)
Q Consensus 22 dy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~-~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~ 100 (281)
+..+-+..+++.+.- .|.+-++|-.|-.+.-.+|+.. .-++.+..+|..+..+-.+|..+--++...+.|+.-+.+
T Consensus 93 dL~~El~~l~eI~e~---npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y 169 (318)
T KOG0530|consen 93 DLNKELEYLDEIIED---NPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAY 169 (318)
T ss_pred HHHHHHHHHHHHHHh---CccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 455566666666665 7777777777777777777777 777788888888777777777777777777777777777
Q ss_pred HHHHHHhC
Q 023491 101 VNRLIELN 108 (281)
Q Consensus 101 ~ekAL~ld 108 (281)
....|+.+
T Consensus 170 ~~~Lle~D 177 (318)
T KOG0530|consen 170 ADELLEED 177 (318)
T ss_pred HHHHHHHh
Confidence 76666665
No 371
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=77.70 E-value=13 Score=39.42 Aligned_cols=64 Identities=17% Similarity=0.014 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----HH------hcC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023491 44 IALHSNRAACYLKLHDFKKAAEECTSV----LE------LDY----------NHTGALMLRAQTLVTLKEYNSALFDVNR 103 (281)
Q Consensus 44 ~~a~~nra~~~~klg~y~~Ai~~~~~a----l~------i~p----------~~~~a~~~lg~a~~~~g~~~eAl~~~ek 103 (281)
-..|++.|.-+...++...|+++|+++ ++ -+| .....|-..|+.+...|+++.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 456788888888889999999999874 11 122 2234677789999999999999999987
Q ss_pred HHHh
Q 023491 104 LIEL 107 (281)
Q Consensus 104 AL~l 107 (281)
|-..
T Consensus 938 A~D~ 941 (1416)
T KOG3617|consen 938 AKDY 941 (1416)
T ss_pred hhhh
Confidence 7543
No 372
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=77.64 E-value=34 Score=32.91 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=46.9
Q ss_pred CCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHH--HcCCHHHHHHHHH
Q 023491 3 SPAAPANKIE--RAHQLYRDGRYEEALGFYTEALSVAK--IKQQKIALHSNRAACYL--KLHDFKKAAEECT 68 (281)
Q Consensus 3 ~P~~a~~l~~--~G~~~~~~gdy~eAl~~y~~aL~~~~--~~p~~~~a~~nra~~~~--klg~y~~Ai~~~~ 68 (281)
+|..+....+ ++..+|..++|..|...|..++.... .......++..++.+|. ..-++.+|...++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 4444444444 56689999999999999999998621 11233556666666665 5778999999998
No 373
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=77.44 E-value=10 Score=39.29 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTL 88 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~ 88 (281)
++.+.|..+..+..|..|.++|...-.. -++..||+++..|.+- +.+.+.-|.+.+.+-.+|.++
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~~-----------e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGDT-----------ENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccch-----------HhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHH
Confidence 4556666666666777777776654332 2355666666666543 233333466777777777777
Q ss_pred HHcCCHHHHHHHH
Q 023491 89 VTLKEYNSALFDV 101 (281)
Q Consensus 89 ~~~g~~~eAl~~~ 101 (281)
...|--++|+++|
T Consensus 863 ~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAY 875 (1189)
T ss_pred HhhchHHHHHHHH
Confidence 7777777777766
No 374
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.11 E-value=8.3 Score=41.56 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALML 83 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~ 83 (281)
|+.| .....|..+|..|.|+.|--+|...-. |..+|..+..+|+|..|....++| ++.+.|-.
T Consensus 1192 pN~A-~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~ 1254 (1666)
T KOG0985|consen 1192 PNVA-NIQQVGDRCFEEKMYEAAKLLYSNVSN-----------FAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKE 1254 (1666)
T ss_pred CCch-hHHHHhHHHhhhhhhHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHH
Confidence 4444 456789999999999999888876544 566999999999999999999888 44443333
Q ss_pred ------------------------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023491 84 ------------------------------RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARL 121 (281)
Q Consensus 84 ------------------------------lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l 121 (281)
+-..|...|-|++-+..++.+|-+...+--+...++.+
T Consensus 1255 VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1255 VCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAIL 1322 (1666)
T ss_pred HHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 33344556667777777776666554433333333333
No 375
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=76.99 E-value=4.7 Score=36.06 Aligned_cols=109 Identities=15% Similarity=0.056 Sum_probs=64.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhcCcc---------cHHHHHHHHHHHHHcCC-HHHHH-HHHHHHHHh--cCCC--HHHH
Q 023491 17 LYRDGRYEEALGFYTEALSVAKIKQQ---------KIALHSNRAACYLKLHD-FKKAA-EECTSVLEL--DYNH--TGAL 81 (281)
Q Consensus 17 ~~~~gdy~eAl~~y~~aL~~~~~~p~---------~~~a~~nra~~~~klg~-y~~Ai-~~~~~al~i--~p~~--~~a~ 81 (281)
+|-.|+|+.|+....-||...-.-|. .+.-.+.-+...+..|. ++-.. ..+..+..- -|+- ++.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 35579999999999999987321111 12223445555556665 22221 112222111 1222 2345
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 82 MLRAQTLV---------TLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 82 ~~lg~a~~---------~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
-.+|.++. ..+....|+..|++|+.++|.-- +...+.+|.+.+.
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G-VK~~i~~l~~~lr 225 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG-VKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHh
Confidence 55577673 45688999999999999997643 5566666766665
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.58 E-value=11 Score=35.07 Aligned_cols=58 Identities=17% Similarity=0.089 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491 10 KIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70 (281)
Q Consensus 10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a 70 (281)
+...+..|...|.+.+|+++-++++.+ +|.+...+..+-..+..+|+--.|++.|.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl---dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL---DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc---ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 445678889999999999999999999 9999999999999999999988888888764
No 377
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.54 E-value=76 Score=30.89 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=80.0
Q ss_pred HcCCHH-HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc-C-----------CHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 19 RDGRYE-EALGFYTEALSVAKIKQQKIALHSNRAACYLKL-H-----------DFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 19 ~~gdy~-eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl-g-----------~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
+.|.|+ +++++-...+.. +|....+|+.+=.++... - -++.-+.....+++++|+.-.+|+-|.
T Consensus 40 ~~~~yd~e~l~lt~~ll~~---npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~ 116 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEK---NPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK 116 (421)
T ss_pred hccccchHHHHHHHHHHhh---CchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 345554 355665666665 787777776665554332 2 356667777889999999999999999
Q ss_pred HHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491 86 QTLVTLKE--YNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 86 ~a~~~~g~--~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
-++.+.+. +..-++.++++|++||.|-..+....-|....+..
T Consensus 117 w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 117 WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 99987764 78899999999999999988888877776665544
No 378
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.50 E-value=18 Score=26.55 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=10.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Q 023491 101 VNRLIELNPSSEVYQNLQARLKT 123 (281)
Q Consensus 101 ~ekAL~ldP~~~~a~~~l~~l~~ 123 (281)
+.+++.+-|++........++..
T Consensus 36 L~q~~~~~pD~~~k~~yr~ki~e 58 (75)
T cd02682 36 LSQIVKNYPDSPTRLIYEQMINE 58 (75)
T ss_pred HHHHHHhCCChHHHHHHHHHHHH
Confidence 33444445555544444444433
No 379
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=75.15 E-value=17 Score=35.63 Aligned_cols=76 Identities=14% Similarity=0.024 Sum_probs=38.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHhcCCCHHHHHHHHH
Q 023491 15 HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV--------LELDYNHTGALMLRAQ 86 (281)
Q Consensus 15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a--------l~i~p~~~~a~~~lg~ 86 (281)
..+++.|+++.|++.-. .-.+...|..+|...+..|+++-|..+|.++ |-.-..+...+-.++.
T Consensus 326 eLAl~lg~L~~A~~~a~--------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAK--------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHCT-HHHHHHHCC--------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHH--------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHH
Confidence 34455566555554311 2234556777777777777777777777664 1112233444444444
Q ss_pred HHHHcCCHHHHH
Q 023491 87 TLVTLKEYNSAL 98 (281)
Q Consensus 87 a~~~~g~~~eAl 98 (281)
.....|++.-|.
T Consensus 398 ~a~~~~~~n~af 409 (443)
T PF04053_consen 398 IAEERGDINIAF 409 (443)
T ss_dssp HHHHTT-HHHHH
T ss_pred HHHHccCHHHHH
Confidence 444455544443
No 380
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=74.63 E-value=52 Score=31.82 Aligned_cols=102 Identities=18% Similarity=0.065 Sum_probs=67.3
Q ss_pred CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCC--------------HHHHHHHH
Q 023491 6 APANK-IERAHQLYRDGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHD--------------FKKAAEEC 67 (281)
Q Consensus 6 ~a~~l-~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~--------------y~~Ai~~~ 67 (281)
+++.. +.+|..+|..|+|+.|+..|..+..-...+. ..+.+.-..|.|++..+. ++.|...|
T Consensus 206 S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 206 SPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred ChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 34433 4689999999999999999999887532111 224455566677776663 34444445
Q ss_pred HHH----HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 68 TSV----LELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 68 ~~a----l~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
..+ .....--.++.+..+.++..++.+.+|...+-++...
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 442 1111234467888888899999988888777766655
No 381
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=74.41 E-value=85 Score=31.87 Aligned_cols=114 Identities=9% Similarity=-0.049 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHH
Q 023491 10 KIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDY-NHTGALMLRAQTL 88 (281)
Q Consensus 10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p-~~~~a~~~lg~a~ 88 (281)
|.....--...|++....-+|.+++-- -.....+|.+.+.-.-..|+..-|-..+..+.++.. ..+..+..-+..-
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~---cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIP---CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhH---HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 334444455678888888888887764 455566777777777677777777777777766654 3444555556666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 89 VTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 89 ~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
-..|++..|...|+++..--|+...+......+.+.+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 66678888888888877766776555444444444433
No 382
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=73.66 E-value=6.6 Score=36.11 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=68.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhcCcccHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH------
Q 023491 16 QLYRDGRYEEALGFYTEALSVAKIKQQKIAL-----------HSNRAACYLKLHDFKKAAEECTSVLELDYNHT------ 78 (281)
Q Consensus 16 ~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a-----------~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~------ 78 (281)
.++..++.-.|+.+|...+.. .|.+..+ |+....|+ .--....|.+.+.+||-......
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~---~~~NL~~l~~~a~~lEk~~~~Fs~~~-s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG 79 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKG---SPTNLTALIFKAACLEKLYFGFSDWH-SDATMENAKELLDKALMTAEGRGDRSKIG 79 (368)
T ss_pred chhcccchHHHhhhhhhhhcc---CCcceeEEeehhhhHHHHHhhhhhhh-cccChhhHHHHHHHHHHhhhccCCcceee
Confidence 455666777788888887765 3333222 22222222 22346678888888876653222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 79 GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 79 ~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
-+-|+++.+|+...+|+.|.-+|..|+.+-- ...+-.|..++...|.
T Consensus 80 ~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~-~d~L~~We~rLet~L~ 126 (368)
T COG5091 80 LVNFRYFVHFFNIKDYELAQSYFKKAKNLYV-DDTLPLWEDRLETKLN 126 (368)
T ss_pred eehhhhHHHhhhHHHHHHHHHHHHHHHHHhh-cccchHHHHHHHHHHh
Confidence 3778899999999999999999999999843 2334445555555554
No 383
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=73.14 E-value=19 Score=26.04 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSV 36 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~ 36 (281)
+..++.+|...=..|+|.+|+.+|..++..
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677788888889999999999988886
No 384
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=72.82 E-value=20 Score=25.76 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSV 36 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~ 36 (281)
+..++.+|..+=..|+|.+|+.+|..++..
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666777777788888888888888775
No 385
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.99 E-value=31 Score=41.70 Aligned_cols=93 Identities=17% Similarity=0.084 Sum_probs=73.3
Q ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHHhCCC
Q 023491 39 IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTL----KE----YNSALFDVNRLIELNPS 110 (281)
Q Consensus 39 ~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~----g~----~~eAl~~~ekAL~ldP~ 110 (281)
.+...+.++..+|..+.++|++++|-..|..|++++-.-+++|+..|..+... +. -..|+.+|-+|.... .
T Consensus 2807 ~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~ 2885 (3550)
T KOG0889|consen 2807 SDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-N 2885 (3550)
T ss_pred hhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-c
Confidence 35567888999999999999999999999999999999999999999876543 22 346777777777664 4
Q ss_pred CHHHHHHHHHHHHHhhcCCCCC
Q 023491 111 SEVYQNLQARLKTQLSLAPIPE 132 (281)
Q Consensus 111 ~~~a~~~l~~l~~~l~~~~~~~ 132 (281)
+..++..++++.-.+.......
T Consensus 2886 ~skaRk~iakvLwLls~dda~~ 2907 (3550)
T KOG0889|consen 2886 SSKARKLIAKVLWLLSFDDSLG 2907 (3550)
T ss_pred chhhHHHHHHHHHHHHhccccc
Confidence 5678888888888777655433
No 386
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.80 E-value=57 Score=34.66 Aligned_cols=102 Identities=18% Similarity=0.051 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK------IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH--- 77 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~------~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~--- 77 (281)
+..-+..|-.+....+|.+|-.+..++....+ .....+.+-.-+|.+....|++++|+..++.++..-|.+
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 33445566677788899999888888766533 112234555667788888999999999999998876643
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491 78 --TGALMLRAQTLVTLKEYNSALFDVNRLIELN 108 (281)
Q Consensus 78 --~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld 108 (281)
..++..+|.+..-.|++..|+.....+.++.
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999998874
No 387
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=71.61 E-value=68 Score=29.52 Aligned_cols=113 Identities=9% Similarity=0.008 Sum_probs=74.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhc-CcccHHHHHHHHHH--HHHcCCHH----HHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 13 RAHQLYRDGRYEEALGFYTEALSVAKI-KQQKIALHSNRAAC--YLKLHDFK----KAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~-~p~~~~a~~nra~~--~~klg~y~----~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
....++..++|++--..|.+....... .+.... |+..... .+.+.... .-...++.=+...|++.-+++.+|
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g 84 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMG 84 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHH
Confidence 456788999999999999888754221 111111 2211111 22222211 245555566788999999999998
Q ss_pred HHHHHcC----------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 86 QTLVTLK----------------------EYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 86 ~a~~~~g----------------------~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
..+.... -.+.|+.++.+|+.++|....+...+-.+-..++
T Consensus 85 ~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 85 MYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 8877642 1578899999999999998888877777766554
No 388
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=70.41 E-value=26 Score=28.09 Aligned_cols=83 Identities=12% Similarity=-0.041 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHhhhcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHH
Q 023491 21 GRYEEALGFYTEALSVAKIKQQ--KIALHSNRAACYLKLHDFKKAAEECTSVLE--LDYNHTGALMLRAQTLVTLKEYNS 96 (281)
Q Consensus 21 gdy~eAl~~y~~aL~~~~~~p~--~~~a~~nra~~~~klg~y~~Ai~~~~~al~--i~p~~~~a~~~lg~a~~~~g~~~e 96 (281)
+.-..-..++++++..+..++. +-.=|+.+-..|..+-. .+...|..+.. +....+..|-..|..+...|++..
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~ 117 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKK 117 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHH
Confidence 3445556777777777642211 11122333333333333 77888877754 556788888889999999999999
Q ss_pred HHHHHHHHH
Q 023491 97 ALFDVNRLI 105 (281)
Q Consensus 97 Al~~~ekAL 105 (281)
|.+.|+.+|
T Consensus 118 A~~I~~~Gi 126 (126)
T PF08311_consen 118 ADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 999998875
No 389
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=70.25 E-value=24 Score=25.23 Aligned_cols=30 Identities=43% Similarity=0.596 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSV 36 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~ 36 (281)
+..+...|..+=..|+|.+|+.+|..++..
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445667777777889999999999888886
No 390
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.18 E-value=1e+02 Score=33.19 Aligned_cols=111 Identities=19% Similarity=0.233 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----c--CcccHHHHHHHHHHHH------------HcCCHHHH--HH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK-----I--KQQKIALHSNRAACYL------------KLHDFKKA--AE 65 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~--~p~~~~a~~nra~~~~------------klg~y~~A--i~ 65 (281)
....++.|-.+...|.|.+|+++|...|-.++ . ....+.-+...+.-|. .......+ +.
T Consensus 991 l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElA 1070 (1202)
T KOG0292|consen 991 LNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELA 1070 (1202)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHH
Confidence 34556788888999999999999999987755 1 1111222222222221 11223333 22
Q ss_pred HHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 023491 66 ECTSVLELDYNHTG-ALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNL 117 (281)
Q Consensus 66 ~~~~al~i~p~~~~-a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~ 117 (281)
.|-.-..+.|-+.. ++...-++++++++|..|-....++|++.|..+.+...
T Consensus 1071 aYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~ 1123 (1202)
T KOG0292|consen 1071 AYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQA 1123 (1202)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHH
Confidence 22122244444433 44444568899999999999999999999988776553
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.01 E-value=37 Score=28.79 Aligned_cols=52 Identities=19% Similarity=0.095 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023491 60 FKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSE 112 (281)
Q Consensus 60 y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~ 112 (281)
....++...+.++..| ++..+.+++.++...|+.++|...+.++..+-|.+.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 3444555566666666 888999999999999999999999999999999433
No 392
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=68.95 E-value=17 Score=20.47 Aligned_cols=26 Identities=19% Similarity=-0.037 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491 93 EYNSALFDVNRLIELNPSSEVYQNLQ 118 (281)
Q Consensus 93 ~~~eAl~~~ekAL~ldP~~~~a~~~l 118 (281)
+++.|...|++++...|.+..++...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 44555555666665555555554443
No 393
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.62 E-value=33 Score=34.39 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALM 82 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~ 82 (281)
|.++--++..|..+...|+-+.|+..++..+. ..........++-+|.++.-+.+|..|...+..+.... ++..|+|
T Consensus 264 p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dWS~a~Y 340 (546)
T KOG3783|consen 264 PKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DWSHAFY 340 (546)
T ss_pred CCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hhhHHHH
Confidence 55666677778888888887778888888777 22244566778889999999999999999998876655 3444433
No 394
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=68.48 E-value=27 Score=35.19 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~ 72 (281)
||.+...|..+-..+..+ -++++...|++.+.. -|..+.+|.-.....+..++|+.....|.++|.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~---FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV---FPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc---CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 677777777666555554 777777777777776 666666666666666777777777777777653
No 395
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=68.17 E-value=17 Score=32.38 Aligned_cols=49 Identities=35% Similarity=0.477 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 023491 24 EEALGFYTEALSVAK-----IKQQKIALHSNRAACYLK-LHDFKKAAEECTSVLE 72 (281)
Q Consensus 24 ~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~k-lg~y~~Ai~~~~~al~ 72 (281)
..|...|++|+.++. .+|....+.+|.+..|+. +|+..+|+.....++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 567778888877653 566677777888877765 8888888888888753
No 396
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.99 E-value=57 Score=30.60 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHH
Q 023491 11 IERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKK 62 (281)
Q Consensus 11 ~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~ 62 (281)
.+.|+-+.+.+++.+|+..|.+.+...- .....-....+++..|...|++..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 6789999999999999999999987511 112234566788888888887654
No 397
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.45 E-value=32 Score=35.17 Aligned_cols=52 Identities=17% Similarity=-0.005 Sum_probs=41.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 51 AACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 51 a~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
-.+.+++|+++.|.....++ ++..-|-.||.+....+++..|.++|.++..+
T Consensus 644 Felal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 644 FELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34556788888887777666 77888899999999999999999999887654
No 398
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=67.16 E-value=1e+02 Score=29.62 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=49.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------------------
Q 023491 15 HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD-------------------- 74 (281)
Q Consensus 15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-------------------- 74 (281)
..+.+..+..+-|..-..|+.+ ++..+.+|.-+|.- ..--..+|...+.++++..
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeI---N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~ 266 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEI---NNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQ 266 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhc---CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhh
Confidence 3445555566666666666776 66666666555422 1122333444444443321
Q ss_pred ---CCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491 75 ---YNHTGALM--LRAQTLVTLKEYNSALFDVNRLIELNP 109 (281)
Q Consensus 75 ---p~~~~a~~--~lg~a~~~~g~~~eAl~~~ekAL~ldP 109 (281)
..+...|. ++|.|-.++|+..+|++.|+-..+-.|
T Consensus 267 ~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 267 LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 11222333 446677778888888888877666555
No 399
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=66.90 E-value=29 Score=25.26 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSV 36 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~ 36 (281)
+-.++.+|...=..|+|++|+.+|..+|..
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445677788888889999999999888886
No 400
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=66.74 E-value=91 Score=33.23 Aligned_cols=94 Identities=15% Similarity=0.051 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHH--
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAK--IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN----HTG-- 79 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~----~~~-- 79 (281)
+..--+|.++...|+++.|+.+-+.++...+ ..-..+.++...|.+.+-.|+|.+|+.....+.++... +..
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~ 538 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW 538 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3444578888999999999999999999865 33456888999999999999999999999998877433 222
Q ss_pred HHHHHHHHHHHcCC--HHHHHHHH
Q 023491 80 ALMLRAQTLVTLKE--YNSALFDV 101 (281)
Q Consensus 80 a~~~lg~a~~~~g~--~~eAl~~~ 101 (281)
+.+..+.++...|+ +......|
T Consensus 539 ~~~~~s~il~~qGq~~~a~~~~~~ 562 (894)
T COG2909 539 SLLQQSEILEAQGQVARAEQEKAF 562 (894)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34445777888884 33334444
No 401
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.64 E-value=1e+02 Score=27.89 Aligned_cols=96 Identities=10% Similarity=-0.007 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhc------CCC
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK--IKQQKIALHSNRAACYLKLHDFK-KAAEECTSVLELD------YNH 77 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~--~~p~~~~a~~nra~~~~klg~y~-~Ai~~~~~al~i~------p~~ 77 (281)
.+.++.-+..+++.|++.-|..+-.-.|.... ..+.+....-+++.++.....-. .-....+++|+-- -.+
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 45666777888899999888877555444432 23344444566666666554322 2233333444332 246
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 023491 78 TGALMLRAQTLVTLKEYNSALFDVN 102 (281)
Q Consensus 78 ~~a~~~lg~a~~~~g~~~eAl~~~e 102 (281)
+..+..+|..+.+.|++..|..+|-
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHH
Confidence 7889999999999999999988873
No 402
>PF15469 Sec5: Exocyst complex component Sec5
Probab=66.51 E-value=57 Score=27.49 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=12.1
Q ss_pred HHcCCHHHHHHHHHHHHHhc
Q 023491 55 LKLHDFKKAAEECTSVLELD 74 (281)
Q Consensus 55 ~klg~y~~Ai~~~~~al~i~ 74 (281)
.+.|+|+.++.+|.++..+.
T Consensus 97 i~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HHcCcHHHHHHHHHHHHHHH
Confidence 35566666666666665443
No 403
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=65.64 E-value=31 Score=33.91 Aligned_cols=119 Identities=14% Similarity=0.159 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHH--------------------HHcCC---HHH
Q 023491 6 APANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACY--------------------LKLHD---FKK 62 (281)
Q Consensus 6 ~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~--------------------~klg~---y~~ 62 (281)
-....+..|...+..++|..++..+.+||+..-.-. +.. .+.+..|- ..-|. ...
T Consensus 30 p~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~-~~~-~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~ 107 (471)
T KOG4459|consen 30 PHELAYSHGLESYEEENWPEAVRFLERALRLFRALR-DSE-AFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAA 107 (471)
T ss_pred CHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHh-hhH-HHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHH
Confidence 345667889999999999999999999998732000 000 00111111 01111 222
Q ss_pred HHHHHHHHHHhcCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 023491 63 AAEECTSVLELDYNH----------TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLS 126 (281)
Q Consensus 63 Ai~~~~~al~i~p~~----------~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~ 126 (281)
++..|...+-..+.. -..|-.|-.+|++.|.+..|++.-...|-.+|++..+..++.--+..+.
T Consensus 108 Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~ 181 (471)
T KOG4459|consen 108 CLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLG 181 (471)
T ss_pred HHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccC
Confidence 223333222222222 1468888899999999999999999999999999999999888776654
No 404
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.93 E-value=49 Score=33.21 Aligned_cols=82 Identities=17% Similarity=0.000 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHH
Q 023491 44 IALHSNRAACYLKLHDFKKAAEECTSVLELD----Y---NHTGALMLRAQTLVTLKE-YNSALFDVNRLIELNPSSEVYQ 115 (281)
Q Consensus 44 ~~a~~nra~~~~klg~y~~Ai~~~~~al~i~----p---~~~~a~~~lg~a~~~~g~-~~eAl~~~ekAL~ldP~~~~a~ 115 (281)
..-++-+|.++..+|+-..|..+|..++... . -.+-++|-||..+..+|. ..+|.+++.+|-....+..---
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~len 528 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELEN 528 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhh
Confidence 3446778999999999999999998887331 1 124699999999999999 9999999999999876654433
Q ss_pred HHHHHHHHHh
Q 023491 116 NLQARLKTQL 125 (281)
Q Consensus 116 ~~l~~l~~~l 125 (281)
++--+|+..+
T Consensus 529 RLh~rIqAAl 538 (546)
T KOG3783|consen 529 RLHMRIQAAL 538 (546)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 405
>PF12854 PPR_1: PPR repeat
Probab=64.74 E-value=16 Score=22.08 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023491 43 KIALHSNRAACYLKLHDFKKAAEECTS 69 (281)
Q Consensus 43 ~~~a~~nra~~~~klg~y~~Ai~~~~~ 69 (281)
+...|..+-.+|.+.|++++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445566677777777777777777654
No 406
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.69 E-value=15 Score=26.95 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSV 36 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~ 36 (281)
+-.+..+|..+=..|+|.+|+.+|..+|..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445667778888888999999888888886
No 407
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.24 E-value=1.1e+02 Score=27.60 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=54.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 023491 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG 79 (281)
Q Consensus 13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~ 79 (281)
-...+++.+...+||.....-++. .|.+...+-.+-..|.-.|+|.+|...|.-+-++.|.+..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 345778889999999999999998 8888777777777788899999999999999999987653
No 408
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.89 E-value=24 Score=19.80 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 023491 59 DFKKAAEECTSVLELDYNHTGALMLRA 85 (281)
Q Consensus 59 ~y~~Ai~~~~~al~i~p~~~~a~~~lg 85 (281)
+++.|...|++++...|.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 455556666666666665555554443
No 409
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.81 E-value=13 Score=27.35 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSV 36 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~ 36 (281)
-.++.+|...=..|+|++|+.+|..+|.+
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 34556666667778888888888888886
No 410
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.63 E-value=98 Score=36.48 Aligned_cols=112 Identities=13% Similarity=0.023 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----
Q 023491 3 SPAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH----- 77 (281)
Q Consensus 3 ~P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~----- 77 (281)
+.+-++.|.+.|..+-..|+++.|-...-.|... . -+.++.-+|-.+.+.|+-..|+..++..+..+-.+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~---r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~ 1740 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKES---R--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPY 1740 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc---c--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCc
Confidence 3456788999999999999999999988888775 3 67889999999999999999999999999775222
Q ss_pred ------------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHH
Q 023491 78 ------------TGALMLRAQTLVTLKEY--NSALFDVNRLIELNPSSEVYQNLQA 119 (281)
Q Consensus 78 ------------~~a~~~lg~a~~~~g~~--~eAl~~~ekAL~ldP~~~~a~~~l~ 119 (281)
.++.+..+.-....+++ ..-++.|..+..+.|.+..-...++
T Consensus 1741 ~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1741 TDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 12445555555555553 3457888999999996554444444
No 411
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=62.85 E-value=79 Score=26.32 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=40.6
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 9 NKIERAHQL-YRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL 73 (281)
Q Consensus 9 ~l~~~G~~~-~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i 73 (281)
.++..|..+ ..+|.-++--..+...... ....+.+++.+|.+|-++|+..+|-..+.+|.+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn---~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN---EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc---cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 455566444 4555555555666666643 6678999999999999999999999988888653
No 412
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=62.52 E-value=42 Score=25.97 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 023491 47 HSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKE 93 (281)
Q Consensus 47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~ 93 (281)
.+..|...+-.|+|..|.+...++-+..+...-.|+.-+.+-..+|+
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 44566777778888888888888866655555556655666666654
No 413
>PF13041 PPR_2: PPR repeat family
Probab=62.35 E-value=39 Score=21.75 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 45 ALHSNRAACYLKLHDFKKAAEECTSVLEL 73 (281)
Q Consensus 45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i 73 (281)
..|..+-.+|.+.|++++|.+.|.+..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34455555666666666666666665544
No 414
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.07 E-value=58 Score=35.55 Aligned_cols=62 Identities=13% Similarity=0.000 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491 42 QKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELN 108 (281)
Q Consensus 42 ~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ld 108 (281)
..+.+|..+|.+.++.|...+|+..|-+| +++..|...-.+..+.|.|++-+.++..|.+..
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 45788999999999999999999999888 889999999999999999999999998887754
No 415
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=61.53 E-value=15 Score=25.88 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=11.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 023491 50 RAACYLKLHDFKKAAEECTSVL 71 (281)
Q Consensus 50 ra~~~~klg~y~~Ai~~~~~al 71 (281)
.|.-+=..|+|.+|+..|..++
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3333444566666666555553
No 416
>PF12854 PPR_1: PPR repeat
Probab=59.50 E-value=26 Score=21.12 Aligned_cols=28 Identities=4% Similarity=-0.130 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023491 76 NHTGALMLRAQTLVTLKEYNSALFDVNR 103 (281)
Q Consensus 76 ~~~~a~~~lg~a~~~~g~~~eAl~~~ek 103 (281)
.+...|-.+-..|++.|++++|++.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3566778888999999999999998864
No 417
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=58.78 E-value=2.1e+02 Score=29.08 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHhcCCC---
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAA---EECTSVLELDYNH--- 77 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai---~~~~~al~i~p~~--- 77 (281)
|..+..++..+..--..|++..|..+|+..... -|....+-+..+...+++|+++.+- ..+........++
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e---~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~ 439 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESE---YPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGIL 439 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh---CCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchh
Confidence 345555666666666778999999999998887 5777777777888888889888888 4443333222211
Q ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 78 TGALMLRAQT-LVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 78 ~~a~~~lg~a-~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
...+...+.. +.-.++...|...+.+++...|.+......+..+....
T Consensus 440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 440 EKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 2234444443 34467889999999999999999988877776665543
No 418
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=57.83 E-value=17 Score=20.37 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491 47 HSNRAACYLKLHDFKKAAEECTSVL 71 (281)
Q Consensus 47 ~~nra~~~~klg~y~~Ai~~~~~al 71 (281)
|..+-.+|.+.|++++|...|.+..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444455555666666666555543
No 419
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=57.02 E-value=59 Score=23.78 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=10.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491 99 FDVNRLIELNPSSEVYQNLQARLKT 123 (281)
Q Consensus 99 ~~~ekAL~ldP~~~~a~~~l~~l~~ 123 (281)
..|..+++..|+...-.....++..
T Consensus 34 e~l~~~lk~e~d~~~k~~~r~ki~e 58 (77)
T cd02683 34 DLLMQVLKGTKDEAKKKNLRQKISE 58 (77)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3333444445544333333333333
No 420
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=56.99 E-value=74 Score=23.18 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSV 36 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~ 36 (281)
+..++.+|...=..|+|.+|+.+|..+|..
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445667777777788888888888888876
No 421
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=56.61 E-value=1.2e+02 Score=25.33 Aligned_cols=98 Identities=20% Similarity=0.173 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh------------------------------------cCcccHHHHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAK------------------------------------IKQQKIALHSNRAA 52 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~------------------------------------~~p~~~~a~~nra~ 52 (281)
.....+..++..|+.++|+.++.++..... ............+.
T Consensus 4 ~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 4 RDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHH
Confidence 456788899999999999999999876642 01233556678889
Q ss_pred HHHHcCCHHHHHHHHHHH-HHhc------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 53 CYLKLHDFKKAAEECTSV-LELD------Y-NHTGALMLRAQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 53 ~~~klg~y~~Ai~~~~~a-l~i~------p-~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ 106 (281)
-+++.|+...|...+.-+ ..+. | .........+..+...|++.+|...+..++.
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999999999998888765 1111 1 1234667889999999999999999988874
No 422
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=56.34 E-value=1.4e+02 Score=29.25 Aligned_cols=62 Identities=10% Similarity=0.011 Sum_probs=29.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 023491 15 HQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYN 76 (281)
Q Consensus 15 ~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~ 76 (281)
..|+..+.|+.|-.+-.+...--. .+..-+..+|.+|.+..-+++|..|.+++..|++..|.
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 445555555555555444432100 01122444455555555555555555555555555553
No 423
>PRK11619 lytic murein transglycosylase; Provisional
Probab=56.33 E-value=1.1e+02 Score=31.56 Aligned_cols=56 Identities=11% Similarity=-0.072 Sum_probs=43.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 51 AACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 51 a~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ 106 (281)
....+..+++..+...+...-.......+..|.+|.++..+|+.++|...|+++..
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44445788888777777765443446778999999999999999999999998754
No 424
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.94 E-value=1.9e+02 Score=27.56 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhcCCCHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAK-----IKQQKIALHSNRAACYLKLHDFKKAAEECTSV--LELDYNHTGAL 81 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-----~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a--l~i~p~~~~a~ 81 (281)
....+|..|-+.++|..|...+.-. .+-. ........+..+|.+|+..++-.+|..+..++ +..+..|....
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 4567889999999999998875432 1100 12234667888999999999999999888776 33344555433
Q ss_pred HHH----HHHHHHcCCHHHHHHHHHHHHH
Q 023491 82 MLR----AQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 82 ~~l----g~a~~~~g~~~eAl~~~ekAL~ 106 (281)
... |.++-..++|-+|.+.|-+...
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 3344445677777766655544
No 425
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=55.92 E-value=27 Score=25.03 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=9.0
Q ss_pred HHcCCHHHHHHHHHHHH
Q 023491 55 LKLHDFKKAAEECTSVL 71 (281)
Q Consensus 55 ~klg~y~~Ai~~~~~al 71 (281)
=..|++++|+..|..++
T Consensus 19 d~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 19 DEAGDYEEALELYKKAI 35 (77)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34555555555555543
No 426
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=55.70 E-value=1.8e+02 Score=29.60 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=63.6
Q ss_pred HHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 31 TEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 31 ~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
++-|.. +|.++.+|+.+-.-+. ..-++++...|+..+...|..+.+|.......++.++|+.-...|.+||.-
T Consensus 10 ~~rie~---nP~di~sw~~lire~q-t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEE---NPYDIDSWSQLIREAQ-TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhc---CCccHHHHHHHHHHHc-cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 445565 9999999998876654 449999999999999999999999999999999999999999999999864
No 427
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.54 E-value=23 Score=33.88 Aligned_cols=55 Identities=22% Similarity=0.229 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023491 47 HSNRAACYLKLHDFKKAAEECTSVLELD--------YNHTGALMLRAQTLVTLKEYNSALFDV 101 (281)
Q Consensus 47 ~~nra~~~~klg~y~~Ai~~~~~al~i~--------p~~~~a~~~lg~a~~~~g~~~eAl~~~ 101 (281)
+...|.-++.+++|++|...|..|..+. -.+..++|..|.+++.++++..++-.+
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5567888899999999999999987663 245678999999999999988887554
No 428
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=54.75 E-value=39 Score=34.17 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491 24 EEALGFYTEALSVAK--IKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70 (281)
Q Consensus 24 ~eAl~~y~~aL~~~~--~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a 70 (281)
..++.+|.+||.... -+..+.--|..+|-+|++.++|.+|+..+..+
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 345566666665543 12233344556666677777777777666554
No 429
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=54.67 E-value=30 Score=19.61 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491 47 HSNRAACYLKLHDFKKAAEECTSVL 71 (281)
Q Consensus 47 ~~nra~~~~klg~y~~Ai~~~~~al 71 (281)
|..+-.+|.+.|++++|+..|....
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344455666666666666666554
No 430
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=54.56 E-value=2.1e+02 Score=29.22 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=57.0
Q ss_pred HcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 023491 19 RDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSAL 98 (281)
Q Consensus 19 ~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl 98 (281)
+.+..+.+..+.+.-+.- ....+...+..|..+-..+..+.|-.+|+.++..+++ .+++..|.-+++.|-...|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 20 QEKKLAQAVALIDSELPT---EALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHhhHHHHHHHHHHhCCc---cchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 344555555555444333 5666777788888888888999999999999888887 66777777777777777776
Q ss_pred HHHH
Q 023491 99 FDVN 102 (281)
Q Consensus 99 ~~~e 102 (281)
..++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 6655
No 431
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=54.53 E-value=36 Score=39.76 Aligned_cols=95 Identities=20% Similarity=0.171 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 023491 12 ERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVT 90 (281)
Q Consensus 12 ~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~ 90 (281)
..|..-|+.+.|..|+.++++- ...+ ........++.+=.+|..+++++.........+ ..| -++..-..+..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a~~----sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-ADP----SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-cCc----cHHHHHHHHHh
Confidence 5677889999999999999884 2111 122345566777779999999998776665321 111 23444455677
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH
Q 023491 91 LKEYNSALFDVNRLIELNPSSE 112 (281)
Q Consensus 91 ~g~~~eAl~~~ekAL~ldP~~~ 112 (281)
.|+|+.|..+|++++..+|+..
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~ 1483 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKE 1483 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccc
Confidence 8999999999999999999854
No 432
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=54.48 E-value=26 Score=25.76 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=14.3
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 023491 56 KLHDFKKAAEECTSVLEL 73 (281)
Q Consensus 56 klg~y~~Ai~~~~~al~i 73 (281)
..|+|++|+..|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 478888888888888764
No 433
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.32 E-value=1e+02 Score=28.99 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCHHHH--
Q 023491 12 ERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD-----YNHTGAL-- 81 (281)
Q Consensus 12 ~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-----p~~~~a~-- 81 (281)
.+...+++.|.|.+|+.+....+.... ..+....++..-+-+|+...+..++..-++.|-... |....+-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 456678999999999999877765543 446667788888899999999999988888875443 3333333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELN 108 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ld 108 (281)
+.-|..++.-.+|.-|-.+|-.+++-.
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhcc
Confidence 333777888889999999998888743
No 434
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=51.74 E-value=40 Score=32.19 Aligned_cols=96 Identities=21% Similarity=0.164 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCCHHHH--
Q 023491 12 ERAHQLYRDGRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD-----YNHTGAL-- 81 (281)
Q Consensus 12 ~~G~~~~~~gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~-----p~~~~a~-- 81 (281)
.+...|+..++|.+|+.+-...++... .......++..=+-+|+.+.+..+|...++.|-... |....+-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 345678889999999999888776543 334556677778889999999999999998875432 3222332
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
+.-|..|+...+|.-|..+|-.|++-
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred HhccceeecccccchHHHHHHHHHcc
Confidence 33377888889999999999988884
No 435
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=51.52 E-value=45 Score=19.06 Aligned_cols=26 Identities=15% Similarity=-0.031 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 47 HSNRAACYLKLHDFKKAAEECTSVLE 72 (281)
Q Consensus 47 ~~nra~~~~klg~y~~Ai~~~~~al~ 72 (281)
|..+-.++.+.|+++.|...|....+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455566666666666666655443
No 436
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=51.50 E-value=4.9 Score=40.35 Aligned_cols=119 Identities=18% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhcC-CCHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV--LELDY-NHTGALML 83 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a--l~i~p-~~~~a~~~ 83 (281)
..-++..+..++..|++..|...+.......-.........+..|.+.+..|++..|+..+... ..+.+ .....|..
T Consensus 24 ~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l 103 (536)
T PF04348_consen 24 AQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQL 103 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHH
Confidence 3445567788899999999999988766221113445666777888999999999999998742 12222 23346667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 023491 84 RAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQL 125 (281)
Q Consensus 84 lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l 125 (281)
+|.++...|++-.|+..+-.+-.+-++......+...|=..+
T Consensus 104 ~A~a~~~~~~~l~Aa~~~i~l~~lL~d~~~~~~N~~~iW~~L 145 (536)
T PF04348_consen 104 RAQAYEQQGDPLAAARERIALDPLLPDPQERQENQDQIWQAL 145 (536)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHH
Confidence 799999999999998887666555543233333333333333
No 437
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=51.33 E-value=38 Score=24.20 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=8.6
Q ss_pred HcCCHHHHHHHHHHHH
Q 023491 56 KLHDFKKAAEECTSVL 71 (281)
Q Consensus 56 klg~y~~Ai~~~~~al 71 (281)
..|+|++|+..|..++
T Consensus 18 ~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 18 EDGNYEEALELYKEAL 33 (75)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3455555555555543
No 438
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=50.66 E-value=40 Score=20.10 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHh
Q 023491 94 YNSALFDVNRLIEL 107 (281)
Q Consensus 94 ~~eAl~~~ekAL~l 107 (281)
+..|+.+|+++.+.
T Consensus 24 ~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 24 YEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHc
Confidence 56666666665543
No 439
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=50.51 E-value=75 Score=32.26 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 61 KKAAEECTSVLEL-----DYNHTGALMLRAQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 61 ~~Ai~~~~~al~i-----~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ 106 (281)
..++..|.+||.. +..+.-.|..+|..|++.++|.+|+..|-.|-.
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666544 234667899999999999999999999876654
No 440
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.01 E-value=2.4e+02 Score=27.10 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHHHHHH
Q 023491 10 KIERAHQLYRDGRYEEALGFYTEALSVAKIKQQK--IALHSNRAACYLKLHDFKKAAEECTSVLEL-DYNHTGALMLRAQ 86 (281)
Q Consensus 10 l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~--~~a~~nra~~~~klg~y~~Ai~~~~~al~i-~p~~~~a~~~lg~ 86 (281)
.+.++.|+.+.|+..+|++.|.+..+- -|.. ...+-|+-.+++.+.-|...-..+-+-=.+ -|.++...|.-|.
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke---~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKE---FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
Confidence 346789999999999999999998876 3322 233455555555555444332222111111 1223222221111
Q ss_pred HH-------------HHcC---CHHHHHHHHHHHHHhCCCCHHHHHH
Q 023491 87 TL-------------VTLK---EYNSALFDVNRLIELNPSSEVYQNL 117 (281)
Q Consensus 87 a~-------------~~~g---~~~eAl~~~ekAL~ldP~~~~a~~~ 117 (281)
.- .+.| --..|++.+.+|++.+|.-+.+.-.
T Consensus 355 LK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 355 LKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred HHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHH
Confidence 11 1111 1356889999999999988766443
No 441
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=47.91 E-value=1.1e+02 Score=29.00 Aligned_cols=19 Identities=42% Similarity=0.580 Sum_probs=12.3
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 023491 18 YRDGRYEEALGFYTEALSV 36 (281)
Q Consensus 18 ~~~gdy~eAl~~y~~aL~~ 36 (281)
-..++|.+|+.+|..++.+
T Consensus 21 D~a~nY~eA~~lY~~aleY 39 (439)
T KOG0739|consen 21 DNAKNYEEALRLYQNALEY 39 (439)
T ss_pred cchhchHHHHHHHHHHHHH
Confidence 3456777777777776664
No 442
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=47.50 E-value=1.4e+02 Score=28.62 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc---ccHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHhcCCCHHHHHH
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ---QKIALHSNRAACYLKLHDFKKAAEEC--TSVLELDYNHTGALML 83 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p---~~~~a~~nra~~~~klg~y~~Ai~~~--~~al~i~p~~~~a~~~ 83 (281)
.-.+-|..+...++|..|..+|-.|...+..-. .-...+-.+-.|-.-++..++..... ..+++.......++..
T Consensus 211 lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amka 290 (411)
T KOG1463|consen 211 LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKA 290 (411)
T ss_pred HHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHH
Confidence 334556666677899999999999988755222 22333333445555566666654444 5567778888899988
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023491 84 RAQTLVT--LKEYNSALFDVNRLIELNPSSEVYQNLQARLKT 123 (281)
Q Consensus 84 lg~a~~~--~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~ 123 (281)
.|.++.. +.+|..|+..|..=|.-|| .++..+..+..
T Consensus 291 vAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd 329 (411)
T KOG1463|consen 291 VAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYD 329 (411)
T ss_pred HHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHH
Confidence 8888754 5689999999988777665 44444444443
No 443
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.34 E-value=46 Score=24.40 Aligned_cols=24 Identities=8% Similarity=-0.100 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 023491 47 HSNRAACYLKLHDFKKAAEECTSV 70 (281)
Q Consensus 47 ~~nra~~~~klg~y~~Ai~~~~~a 70 (281)
+..+|.-+=+.|+|.+|+.+|..+
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~a 32 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEA 32 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 333444444444444444444444
No 444
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.17 E-value=96 Score=31.93 Aligned_cols=81 Identities=16% Similarity=0.080 Sum_probs=43.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCHHHH------
Q 023491 16 QLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD--------YNHTGAL------ 81 (281)
Q Consensus 16 ~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~--------p~~~~a~------ 81 (281)
.+++.|+++.|..+..++ ....=|..||.+.+..+++..|.+++.++..+. ..+...+
T Consensus 646 lal~lgrl~iA~~la~e~--------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--------NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--------cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHH
Confidence 445556666665543332 223445666667777777777777666652221 1222222
Q ss_pred ------HHHH-HHHHHcCCHHHHHHHHHHH
Q 023491 82 ------MLRA-QTLVTLKEYNSALFDVNRL 104 (281)
Q Consensus 82 ------~~lg-~a~~~~g~~~eAl~~~ekA 104 (281)
+++| .+|+..|++++++..+...
T Consensus 718 ~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 718 AKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 2222 3566677777777666543
No 445
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=47.12 E-value=45 Score=34.88 Aligned_cols=71 Identities=21% Similarity=0.142 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHH
Q 023491 20 DGRYEEALGFYTEALSVAKIKQQKIALHSNRA-ACYLKLHDFKKAAEECTSVLELDYN--HTGALMLRAQTLVTLKEYNS 96 (281)
Q Consensus 20 ~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra-~~~~klg~y~~Ai~~~~~al~i~p~--~~~a~~~lg~a~~~~g~~~e 96 (281)
-|+|++|..+|-.+-+. + +| -.++++|+|-...+.++..=.-+.+ --.++.++|..++.+..|++
T Consensus 747 ~g~feeaek~yld~drr---D---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~ 814 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR---D---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEE 814 (1189)
T ss_pred hcchhHhhhhhhccchh---h---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666554332 1 11 2234455555444443332111111 11355666666666666666
Q ss_pred HHHHHH
Q 023491 97 ALFDVN 102 (281)
Q Consensus 97 Al~~~e 102 (281)
|.++|.
T Consensus 815 A~~yY~ 820 (1189)
T KOG2041|consen 815 AAKYYS 820 (1189)
T ss_pred HHHHHH
Confidence 666654
No 446
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=47.00 E-value=38 Score=19.73 Aligned_cols=27 Identities=22% Similarity=0.007 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 023491 80 ALMLRAQTLVTL----KEYNSALFDVNRLIE 106 (281)
Q Consensus 80 a~~~lg~a~~~~----g~~~eAl~~~ekAL~ 106 (281)
+.+.+|.+|..- .+...|+.+|+++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 344555544321 255555555555543
No 447
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=46.98 E-value=1.1e+02 Score=23.66 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023491 78 TGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVY 114 (281)
Q Consensus 78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a 114 (281)
.......|.+.+..|+|..|.+.+.++-+.. +++..
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~-~~~~l 94 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLS-DNPLL 94 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHH
Confidence 3445667888888999999999999997664 34433
No 448
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=46.82 E-value=2.5e+02 Score=26.33 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 80 ALMLRAQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 80 a~~~lg~a~~~~g~~~eAl~~~ekAL~ 106 (281)
++|..|..+...+++.+|+..++.|..
T Consensus 241 A~y~~A~~~~~~~~~G~aia~L~~A~~ 267 (377)
T PF03097_consen 241 AHYHQALAAEEAKKYGEAIARLRRAEE 267 (377)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 677777778888888888888876654
No 449
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=46.40 E-value=40 Score=25.01 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 11 IERAHQLYRDGRYEEALGFYTEALSV 36 (281)
Q Consensus 11 ~~~G~~~~~~gdy~eAl~~y~~aL~~ 36 (281)
+++|..+=..|+.++|+.+|.+++..
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 450
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=45.67 E-value=1.2e+02 Score=28.96 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=47.8
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 40 KQQKIALHSNRAACYLKLHDFKKAAEECTSV--LELDY--NHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a--l~i~p--~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
.|......|..|...|..|+|..|..++=.. +-.++ ++..+++..-..-.-+.+|+.|++.+.+.-+.
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6677888888999999999999887765333 32222 34556555544556667899998888877765
No 451
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=45.35 E-value=1.1e+02 Score=28.42 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=24.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491 13 RAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70 (281)
Q Consensus 13 ~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a 70 (281)
.+..++..+....|+..+...+.........+...+.++.++...|.+..|...|..+
T Consensus 219 eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L 276 (301)
T TIGR03362 219 EARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAAL 276 (301)
T ss_pred HHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444433321112222333344444444444444444444444
No 452
>KOG2330 consensus Splicing factor 3b, subunit 2 [RNA processing and modification]
Probab=44.79 E-value=19 Score=35.04 Aligned_cols=29 Identities=14% Similarity=0.401 Sum_probs=23.5
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCcc
Q 023491 235 IPKPKGHSTLDYARWDRVEDDSSEDDDDD 263 (281)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (281)
++-+-+||.+++.-|+.|+.+.+++.|+.
T Consensus 354 ~~~~t~es~~~rn~wgel~~e~~E~~EEr 382 (500)
T KOG2330|consen 354 HHNGTKESEIERNHWGELESEEEESSEER 382 (500)
T ss_pred ccccccccccccccccccccccchhhhhh
Confidence 34478899999999999999877776663
No 453
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=43.67 E-value=1.5e+02 Score=27.82 Aligned_cols=46 Identities=13% Similarity=-0.043 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023491 57 LHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVN 102 (281)
Q Consensus 57 lg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~e 102 (281)
...+-+|+..++.++...|.+....+.+..+|..+|-...|...|.
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456678888888888888888888888888888888888888774
No 454
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=43.29 E-value=2.3e+02 Score=24.95 Aligned_cols=112 Identities=14% Similarity=-0.012 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHhcC
Q 023491 8 ANKIERAHQLYR-----DGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL-----H--DFKKAAEECTSVLELDY 75 (281)
Q Consensus 8 ~~l~~~G~~~~~-----~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl-----g--~y~~Ai~~~~~al~i~p 75 (281)
...+..|+-++. .+++..|++.|..+-.. +.+.+..++|+++..- + +..+|..+++++..++
T Consensus 69 kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-----n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~- 142 (248)
T KOG4014|consen 69 KSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-----NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE- 142 (248)
T ss_pred HHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-----CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC-
Confidence 344444544443 24667778877776553 5566777777766532 2 3788999999987664
Q ss_pred CCHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcC
Q 023491 76 NHTGALMLRAQTLVTL------------------------KEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSLA 128 (281)
Q Consensus 76 ~~~~a~~~lg~a~~~~------------------------g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~~ 128 (281)
+..+-|+|...|+.- ++++.|+++-.+|.+++ +..+=.++.++.+.-...
T Consensus 143 -~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv 216 (248)
T KOG4014|consen 143 -DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGV 216 (248)
T ss_pred -CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCC
Confidence 455556666555543 56788888888888884 455556666666554433
No 455
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.70 E-value=76 Score=29.61 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 20 DGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLE 72 (281)
Q Consensus 20 ~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~ 72 (281)
..+..+|+..|.+++.+.. ...--+.++-.+-.++|++++|.+....|...+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3478888899999888822 1112255667777888888999888888888764
No 456
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=41.15 E-value=73 Score=18.51 Aligned_cols=26 Identities=27% Similarity=0.102 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 023491 64 AEECTSVLELDYNHTGALMLRAQTLV 89 (281)
Q Consensus 64 i~~~~~al~i~p~~~~a~~~lg~a~~ 89 (281)
+..+..+|..+|.+-.+|..|-.++.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 45556666666666666666554443
No 457
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.95 E-value=1.2e+02 Score=21.01 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=20.1
Q ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491 40 KQQKIALHSNRAACYLKLHDFKKAAEECTSVL 71 (281)
Q Consensus 40 ~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al 71 (281)
...+..-+...-.-|.++|++++|.+++..+.
T Consensus 19 ~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 19 QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555556666777788888877777664
No 458
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=40.91 E-value=1.3e+02 Score=21.48 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=5.1
Q ss_pred cCCHHHHHHHHHH
Q 023491 91 LKEYNSALFDVNR 103 (281)
Q Consensus 91 ~g~~~eAl~~~ek 103 (281)
.|+|.+|+..|..
T Consensus 19 ~g~y~eA~~~Y~~ 31 (75)
T cd02678 19 AGNYEEALRLYQH 31 (75)
T ss_pred cCCHHHHHHHHHH
Confidence 3444444333333
No 459
>PF13041 PPR_2: PPR repeat family
Probab=40.82 E-value=96 Score=19.82 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Q 023491 78 TGALMLRAQTLVTLKEYNSALFDVNRLIEL--NPSSEVYQN 116 (281)
Q Consensus 78 ~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l--dP~~~~a~~ 116 (281)
...|-.+=..+.+.|++++|++.|++..+. .|+......
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~ 43 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNI 43 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 445666777899999999999999998875 354444433
No 460
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.51 E-value=1.1e+02 Score=21.27 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 11 IERAHQLYRDGRYEEALGFYTEALS 35 (281)
Q Consensus 11 ~~~G~~~~~~gdy~eAl~~y~~aL~ 35 (281)
+..|..+|..|+|-+|-+.++.+-.
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHH
Confidence 3456667777777777776666543
No 461
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=40.33 E-value=1.4e+02 Score=28.51 Aligned_cols=51 Identities=4% Similarity=-0.128 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 60 FKKAAEECTSVLELDY---NHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 60 y~~Ai~~~~~al~i~p---~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
-++.+..+..+|..-| ..++.|.-+|.++...|.++..+..|++|+.....
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 3456666676666655 36678999999999999999999999999988654
No 462
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=40.20 E-value=68 Score=25.76 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=16.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 023491 50 RAACYLKLHDFKKAAEECTSVLELDYNH 77 (281)
Q Consensus 50 ra~~~~klg~y~~Ai~~~~~al~i~p~~ 77 (281)
+|-.++..|++.+|+.+|-+||.+.|.-
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 5555566666666666666666666543
No 463
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.14 E-value=72 Score=27.81 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=27.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023491 52 ACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDV 101 (281)
Q Consensus 52 ~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ 101 (281)
.++++.|.|++|++.+.+.+. ++++...-..|..+-.....|..-++.|
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnF 167 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNF 167 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhc
Confidence 455666666666666666666 5555555445555544444444444433
No 464
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.81 E-value=95 Score=28.99 Aligned_cols=49 Identities=22% Similarity=0.219 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023491 57 LHDFKKAAEECTSVLELDYNHT----GALMLRAQTLVTLKEYNSALFDVNRLI 105 (281)
Q Consensus 57 lg~y~~Ai~~~~~al~i~p~~~----~a~~~lg~a~~~~g~~~eAl~~~ekAL 105 (281)
..+.++|+.-|.+++++.+.-. +++-.+-.+++++++|.+-+..|.+.|
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3355555555555555554322 344444555555555555555554444
No 465
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=39.47 E-value=7.9 Score=32.13 Aligned_cols=17 Identities=35% Similarity=0.792 Sum_probs=13.5
Q ss_pred hhhccCCcceeeecccC
Q 023491 264 DEEESQPQYRFRVRTVG 280 (281)
Q Consensus 264 ~~~~~~~~~~~~~~~~~ 280 (281)
|.||-.|--|-|.|.||
T Consensus 103 e~eEmP~eakmRMrNiG 119 (150)
T PF15473_consen 103 EPEEMPPEAKMRMRNIG 119 (150)
T ss_pred ChhhCCHHHHHHHHhcC
Confidence 33446799999999998
No 466
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=39.30 E-value=9.9 Score=28.41 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=0.0
Q ss_pred CCccCCCCC
Q 023491 231 GWQAIPKPK 239 (281)
Q Consensus 231 ~~~~~~~~~ 239 (281)
|=++.|+|+
T Consensus 13 gk~~~~~~~ 21 (81)
T PF14812_consen 13 GKKSRPKRK 21 (81)
T ss_dssp ---------
T ss_pred CCCCCCCCC
Confidence 333344444
No 467
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.19 E-value=73 Score=31.89 Aligned_cols=50 Identities=22% Similarity=0.108 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 023491 48 SNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSA 97 (281)
Q Consensus 48 ~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eA 97 (281)
..+|.--+..|+|.=|.+.+.+++-.+|.+..+-.+.|.++.++|--.++
T Consensus 456 l~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 456 LELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc
Confidence 34777777888888888888888888888888888888888888865444
No 468
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=38.92 E-value=1e+02 Score=27.85 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhh-----hcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 023491 24 EEALGFYTEALSVA-----KIKQQKIALHSNRAACYLK-LHDFKKAAEECTSVL 71 (281)
Q Consensus 24 ~eAl~~y~~aL~~~-----~~~p~~~~a~~nra~~~~k-lg~y~~Ai~~~~~al 71 (281)
+.|...|+.|+.++ +.+|....+.+|.+..|+. +++..+|+.....++
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777777777653 3566666667777766664 577777776666663
No 469
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=38.71 E-value=32 Score=33.60 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 52 ACYLKLHDFKKAAEECTSVLELDYNHT-------GALMLRAQTLVTLKEYNSALFDVNRLIE 106 (281)
Q Consensus 52 ~~~~klg~y~~Ai~~~~~al~i~p~~~-------~a~~~lg~a~~~~g~~~eAl~~~ekAL~ 106 (281)
..+.-+|++ .| -...+.++|... .+-|..|.+|..+++|.+|+..|-.+|-
T Consensus 243 R~H~lLgDh-Qa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 243 RMHILLGDH-QA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHhhhh-Hh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 334447884 44 445566766443 2458899999999999999999977664
No 470
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=37.03 E-value=1.6e+02 Score=24.47 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----cCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAK----IKQQ-KIALHSNRAACYLKLHDFKKAAEECTSVLE 72 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~----~~p~-~~~a~~nra~~~~klg~y~~Ai~~~~~al~ 72 (281)
....+..++.+++.|+...|...+..+-.-.. .-|. ......+++..++..|+|.+|...+..++.
T Consensus 75 ~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 75 KKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 45667889999999999999998877633211 1121 234456799999999999999999988864
No 471
>PF14851 FAM176: FAM176 family
Probab=36.92 E-value=26 Score=29.36 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=6.7
Q ss_pred cCCCCCCCCCCccc
Q 023491 234 AIPKPKGHSTLDYA 247 (281)
Q Consensus 234 ~~~~~~~~~~~~~~ 247 (281)
..+.|++|.--+..
T Consensus 55 ~~~~~~~~~~~~~~ 68 (153)
T PF14851_consen 55 ELPSPKKKQLKESS 68 (153)
T ss_pred ccCCcccccccccc
Confidence 34555555544443
No 472
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=36.70 E-value=1e+02 Score=29.73 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-cCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023491 49 NRAACYLKLHDFKKAAEECTSVLEL-DYNHT--------GALMLRAQTLVTLKEYNSALFDVNRLIELNPS 110 (281)
Q Consensus 49 nra~~~~klg~y~~Ai~~~~~al~i-~p~~~--------~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~ 110 (281)
.+..+|+++++++.+...++..-.. .|+.. ..+|+||.+|.-..++.+|-..+..|+..-|.
T Consensus 182 lL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 3457788999998876655443221 12222 47899999999999999999999999998876
No 473
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=36.65 E-value=1.3e+02 Score=28.74 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 4 PAAPANKIERAHQLYRDGRYEEALGFYTEALSVAK-IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLEL 73 (281)
Q Consensus 4 P~~a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i 73 (281)
|.-.+.++..|...|..|.|..|..++--...++. .+++...+....-..-.-+.+++.|++++.++-++
T Consensus 126 ~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 126 PERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44567889999999999999999887443333322 34434444333333444577899999999887543
No 474
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.57 E-value=1.5e+02 Score=24.98 Aligned_cols=34 Identities=15% Similarity=-0.051 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 023491 42 QKIALHSNRAACYLKLHDFKKAAEECTSVLELDY 75 (281)
Q Consensus 42 ~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p 75 (281)
.++.++.+++.++..+|+.++|.....++..+.|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3788899999999999999999999999999998
No 475
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=36.33 E-value=2.9e+02 Score=24.84 Aligned_cols=65 Identities=14% Similarity=0.012 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH----------------HHHhcCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q 023491 43 KIALHSNRAACYLKLHDFKKAAEECTS----------------VLELDYNHTGALMLRAQT-LVTLKEYNSALFDVNRLI 105 (281)
Q Consensus 43 ~~~a~~nra~~~~klg~y~~Ai~~~~~----------------al~i~p~~~~a~~~lg~a-~~~~g~~~eAl~~~ekAL 105 (281)
++.++..+|..|++.|+|..|..+|-. .....+.....+..+|.. |..+++...|...+...+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 455566666666666666666555421 112345566777777764 677899999998887777
Q ss_pred Hh
Q 023491 106 EL 107 (281)
Q Consensus 106 ~l 107 (281)
+.
T Consensus 169 ~~ 170 (260)
T PF04190_consen 169 SK 170 (260)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 476
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=35.80 E-value=1.2e+02 Score=22.13 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHHHH
Q 023491 58 HDFKKAAEECTSVL 71 (281)
Q Consensus 58 g~y~~Ai~~~~~al 71 (281)
|+|.+|+.+|..+|
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555554443
No 477
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=34.77 E-value=3.2e+02 Score=24.10 Aligned_cols=94 Identities=15% Similarity=0.010 Sum_probs=60.4
Q ss_pred HHcCCHHHHHHH-HHHHHHhhh---cCcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 023491 18 YRDGRYEEALGF-YTEALSVAK---IKQQKIALHSNRAACYLK-----LHDFKKAAEECTSVLELDYNHTGALMLRAQTL 88 (281)
Q Consensus 18 ~~~gdy~eAl~~-y~~aL~~~~---~~p~~~~a~~nra~~~~k-----lg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~ 88 (281)
+..|+|-++|.. |+.|..... .+...+...|.+|..++- .++...|++.+..+.. .+.+.+-.++|.++
T Consensus 38 ~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~ 115 (248)
T KOG4014|consen 38 QLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLH 115 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhh
Confidence 334555555533 555555432 133445556667765553 3468899999988866 45677778888777
Q ss_pred HHc-----C--CHHHHHHHHHHHHHhCCCCHH
Q 023491 89 VTL-----K--EYNSALFDVNRLIELNPSSEV 113 (281)
Q Consensus 89 ~~~-----g--~~~eAl~~~ekAL~ldP~~~~ 113 (281)
..- + +...|+.++.++..+.-....
T Consensus 116 ~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aC 147 (248)
T KOG4014|consen 116 WNGEKDRKADPDSEKAERYMTRACDLEDGEAC 147 (248)
T ss_pred ccCcCCccCCCCcHHHHHHHHHhccCCCchHH
Confidence 542 2 378999999999988655443
No 478
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=34.18 E-value=4.2e+02 Score=27.90 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHhCCCCHHHH
Q 023491 75 YNHTGALMLRAQTLVTLKEYNSALFDVNR---LIELNPSSEVYQ 115 (281)
Q Consensus 75 p~~~~a~~~lg~a~~~~g~~~eAl~~~ek---AL~ldP~~~~a~ 115 (281)
|.+.+-|...|.-.+..|+|+.+..++.. .-.|.|+-..++
T Consensus 650 PEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~ 693 (843)
T KOG1076|consen 650 PENTREHVVAASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVL 693 (843)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHH
Confidence 56777777777777888999999886644 444566544333
No 479
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=34.12 E-value=2.1e+02 Score=29.30 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023491 49 NRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVY 114 (281)
Q Consensus 49 nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a 114 (281)
..+..+-+.+..+.+....+.-+......+..++..|..+-..+..+.|-++|++++..+|+|.-+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (578)
T PRK15490 13 KTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEARY 78 (578)
T ss_pred hHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchHH
Confidence 345556667778888777777766666778889999999999999999999999999999986543
No 480
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=33.64 E-value=1.6e+02 Score=27.33 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCC--------------------------HHHHHHHHHHHHHhcC-----------------CCHHH
Q 023491 44 IALHSNRAACYLKLHD--------------------------FKKAAEECTSVLELDY-----------------NHTGA 80 (281)
Q Consensus 44 ~~a~~nra~~~~klg~--------------------------y~~Ai~~~~~al~i~p-----------------~~~~a 80 (281)
..+++.||.+|+.+-+ |+..+.++..|+..-| ...-+
T Consensus 99 aeA~~lRA~~y~~L~~~fG~vP~~~~~~~~~~~~~~~s~~evy~~i~~dL~~A~~~L~~~~~~~~~~~~~~~~r~~k~aA 178 (359)
T cd08977 99 GEAKFIRALAYFYLTRLFGGVPLSTAADQGTETPPRDSQEEVYTQILADLDEAIALLPEASSAQDFYIYFGDGRAWKKAA 178 (359)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceecCcCccccCCCCCCHHHHHHHHHHHHHHHHHhccccccccccccccCcchhhHHHH
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 023491 81 LMLRAQTLVTLK-----EYNSALFDVNRLIE 106 (281)
Q Consensus 81 ~~~lg~a~~~~g-----~~~eAl~~~ekAL~ 106 (281)
+..+|.+++.++ +|++|+..+..++.
T Consensus 179 ~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 179 RALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
No 481
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.62 E-value=3.1e+02 Score=26.17 Aligned_cols=62 Identities=15% Similarity=-0.000 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH--HHHHHHHHH--HHHcCCHHHHHHHHHHHHHh
Q 023491 46 LHSNRAACYLKLHDFKKAAEECTSVLELDYNHT--GALMLRAQT--LVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 46 a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~--~a~~~lg~a--~~~~g~~~eAl~~~ekAL~l 107 (281)
....++..++..++|..|...|..++..-+... ..+..++.+ +-..-++.+|...++.++..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 446788888999999999999999987523333 355555444 45577899999999988875
No 482
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=33.61 E-value=2.3e+02 Score=22.14 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 023491 14 AHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKE 93 (281)
Q Consensus 14 G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~ 93 (281)
+..+.+.+.|.+|+.+|.+.=.. .-.+-.+..++++++.|++++.+. .+++.|..++..+.....
T Consensus 76 ~~~c~~~~l~~~~~~l~~k~~~~----------~~Al~~~l~~~~d~~~a~~~~~~~-----~~~~lw~~~~~~~l~~~~ 140 (140)
T smart00299 76 GKLCEKAKLYEEAVELYKKDGNF----------KDAIVTLIEHLGNYEKAIEYFVKQ-----NNPELWAEVLKALLDKPR 140 (140)
T ss_pred HHHHHHcCcHHHHHHHHHhhcCH----------HHHHHHHHHcccCHHHHHHHHHhC-----CCHHHHHHHHHHHHccCC
No 483
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=33.19 E-value=2e+02 Score=22.13 Aligned_cols=77 Identities=8% Similarity=-0.024 Sum_probs=42.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhh
Q 023491 50 RAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNPS--SEVYQNLQARLKTQLS 126 (281)
Q Consensus 50 ra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~--~~~a~~~l~~l~~~l~ 126 (281)
.+..|+..++++..+..+..+..+-..-+.+..-.+.+..--.++.+|..++++.....-. -..++.....|.+.+.
T Consensus 20 As~~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~~L~~A~~~~~~y~~t~~~~~l~~aW~~y~~v~~~i~ 98 (100)
T PF08771_consen 20 ASRLYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGRDLQEAREWLKRYERTGDETDLNQAWDIYYQVYRRIK 98 (100)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHhhHHHHHHHHHHHHHHHh
Confidence 4455667888888888887775553333333444444444445677777777777665422 1245555555555443
No 484
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=33.11 E-value=6.4e+02 Score=27.01 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHc---CCHHHHHHH----HHHHHHhcCCCHH--
Q 023491 9 NKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKL---HDFKKAAEE----CTSVLELDYNHTG-- 79 (281)
Q Consensus 9 ~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~kl---g~y~~Ai~~----~~~al~i~p~~~~-- 79 (281)
...+.|..+-..|.|+.|+.+|..|=.. +..-..+...++.+.... +...+.+.. ...++..++..+.
T Consensus 624 i~~~vA~~a~~~G~~~~sI~LY~lag~y---d~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~ 700 (835)
T KOG2168|consen 624 IILEVASEADEDGLFEDAILLYHLAGDY---DKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKV 700 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhh
Confidence 4456788888899999999998877554 322222333344333332 111112222 2223333443332
Q ss_pred ------HHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023491 80 ------ALMLR--AQTLVTLKEYNSALFDVNRLIELNPSSE 112 (281)
Q Consensus 80 ------a~~~l--g~a~~~~g~~~eAl~~~ekAL~ldP~~~ 112 (281)
.+..+ ..=++..|+|+.|+..++. +.+-|.++
T Consensus 701 ~~~t~~lLl~~~~~f~~y~~~~~e~aL~~le~-l~LiP~~~ 740 (835)
T KOG2168|consen 701 VVKTLSLLLDLVSFFDLYHNGEWEEALSILEH-LDLIPLDP 740 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HhccCCCh
Confidence 12222 3335778999999998874 55556543
No 485
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=32.98 E-value=4e+02 Score=25.62 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=21.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Q 023491 85 AQTLVTLKEYNSALFDVNRLIELN 108 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ekAL~ld 108 (281)
|..+...|+...|+.+|.+|+..-
T Consensus 377 g~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 377 GHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHh
Confidence 788999999999999999998764
No 486
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=32.93 E-value=2.3e+02 Score=23.21 Aligned_cols=64 Identities=16% Similarity=0.018 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHh
Q 023491 47 HSNRAACYLKLHDFKKAAEECTSVLELDYN---------------HTGALMLRAQTLVTLKEYNSALFDVNRL----IEL 107 (281)
Q Consensus 47 ~~nra~~~~klg~y~~Ai~~~~~al~i~p~---------------~~~a~~~lg~a~~~~g~~~eAl~~~ekA----L~l 107 (281)
+..+|...++.+++-.++-.|..|+.+--+ ..-...+||..+..+|+-+=.+++++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777777654211 1125689999999999999999988644 445
Q ss_pred CCC
Q 023491 108 NPS 110 (281)
Q Consensus 108 dP~ 110 (281)
-|.
T Consensus 84 iPQ 86 (140)
T PF10952_consen 84 IPQ 86 (140)
T ss_pred ccC
Confidence 554
No 487
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=32.31 E-value=5.6e+02 Score=26.16 Aligned_cols=106 Identities=12% Similarity=0.076 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELD------------- 74 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~------------- 74 (281)
-+++.++.+|..+ ..++-..++++.+++ +-++...-..++..|-+ ++-..++..|.+++..-
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~---dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evW 174 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEY---DFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVW 174 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHh---cchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHH
Confidence 4567778887777 666777778887777 66666666666666655 77778888887775331
Q ss_pred -------CCCHHHHHH------------HH--------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023491 75 -------YNHTGALML------------RA--------QTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQ 118 (281)
Q Consensus 75 -------p~~~~a~~~------------lg--------~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l 118 (281)
++....++. +| .-|....+|.+|+..+.-.|+++-.+.-++..+
T Consensus 175 eKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~ 245 (711)
T COG1747 175 EKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEI 245 (711)
T ss_pred HHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHH
Confidence 222221111 11 223334678999999999999887666555443
No 488
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=32.17 E-value=1.8e+02 Score=31.00 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHh-----------------cCCC-HHHHHHHHHHHHHcCCHHHH
Q 023491 42 QKIALHSNRAACYLKLHDFKKAAEEC------TSVLEL-----------------DYNH-TGALMLRAQTLVTLKEYNSA 97 (281)
Q Consensus 42 ~~~~a~~nra~~~~klg~y~~Ai~~~------~~al~i-----------------~p~~-~~a~~~lg~a~~~~g~~~eA 97 (281)
..+.+|...+.-+-+.|+|.+|.+.| .++|.+ .+++ ...+..+|.-|...|++..|
T Consensus 822 ~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 822 ATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred hHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHH
Confidence 44566666666666777776655444 122222 2222 24667778888888998888
Q ss_pred HHHHHHHHH
Q 023491 98 LFDVNRLIE 106 (281)
Q Consensus 98 l~~~ekAL~ 106 (281)
...|-+|-.
T Consensus 902 e~~flea~d 910 (1636)
T KOG3616|consen 902 EEHFLEAGD 910 (1636)
T ss_pred HHHHHhhhh
Confidence 887766543
No 489
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=31.95 E-value=1.6e+02 Score=27.62 Aligned_cols=47 Identities=19% Similarity=0.092 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023491 21 GRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSV 70 (281)
Q Consensus 21 gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~a 70 (281)
+..-+|+.+++.++.. .|.+..+.+-+..+|..+|-...|...|..+
T Consensus 197 ~~l~~Ai~lLE~~l~~---s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKK---SPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4557788888888887 9999999999999999999999999999765
No 490
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=31.94 E-value=2.4e+02 Score=29.26 Aligned_cols=53 Identities=13% Similarity=0.200 Sum_probs=42.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023491 54 YLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIELNP 109 (281)
Q Consensus 54 ~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP 109 (281)
+.....|..|+..|.+. .-+...+|...|.++.++++|..|..-|.+++++..
T Consensus 566 Lie~ErYqlaV~mckKc---~iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkg 618 (1141)
T KOG1811|consen 566 LIEAERYQLAVEMCKKC---GIDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKG 618 (1141)
T ss_pred HHHHHHHHHHHHHHhhc---CCCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC
Confidence 34455677788877765 225677999999999999999999999999998853
No 491
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=31.84 E-value=1.6e+02 Score=24.15 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=23.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 023491 53 CYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQTLV 89 (281)
Q Consensus 53 ~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~ 89 (281)
.++-.-+.+.|...|..++...|++..++..+-..+-
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 3444446677888888888888888877766655543
No 492
>PF12455 Dynactin: Dynein associated protein ; InterPro: IPR022157 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF01302 from PFAM. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures.
Probab=31.61 E-value=4e+02 Score=24.26 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---------
Q 023491 8 ANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHT--------- 78 (281)
Q Consensus 8 ~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~--------- 78 (281)
+.+.......+....+......|..+|.. .....|...|.+|..+.-.++++..|-.+++.+.-+-
T Consensus 116 e~~~~~~~~~~~L~~l~~~~~rf~~~l~~-----Cs~E~f~k~g~~~~Em~~~Er~lD~~IdlLk~d~LdE~~~~~~L~r 190 (274)
T PF12455_consen 116 EQLSFACRLIYKLSWLQALCHRFESALSR-----CSVEQFLKMGGLYPEMEPVERALDSWIDLLKKDQLDENTCADELER 190 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 33443444444445555555556666553 5677888888998888888888888888887764211
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Q 023491 79 --GALMLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQLSL 127 (281)
Q Consensus 79 --~a~~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~l~~ 127 (281)
..+-.++.+++...-+..+-..+..+..+.-.-..+....+.++..+..
T Consensus 191 ~i~~~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~ld~~~~~~~~l~~~lq~ 241 (274)
T PF12455_consen 191 SIAYFSHLAEVHLPEELEDCADELLDRASLLQSALDSMAANLARLKTLLQS 241 (274)
T ss_pred HHHHHHHHHHHHcCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1233445555554445555555555555554445556666666655543
No 493
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.46 E-value=3.6e+02 Score=23.68 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhh-cC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH------HHH
Q 023491 12 ERAHQLYRDGRYEEALGFYTEALSVAK-IK--QQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTG------ALM 82 (281)
Q Consensus 12 ~~G~~~~~~gdy~eAl~~y~~aL~~~~-~~--p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~------a~~ 82 (281)
..+..+.+.|++++|...+.++..... .. -....-.++-|.|-..+..|.+|...|.-...-.-..+. ..|
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~Y 113 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAY 113 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHH
Confidence 445667888999999999988876643 01 112333455677777788999999988877655433332 223
Q ss_pred HHH------------HHHHHcCCHHHHHHHHH
Q 023491 83 LRA------------QTLVTLKEYNSALFDVN 102 (281)
Q Consensus 83 ~lg------------~a~~~~g~~~eAl~~~e 102 (281)
.+| ......|+++.|...|.
T Consensus 114 ilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~ 145 (204)
T COG2178 114 ILGLADAVGELRRHVLELLRKGSFEEAERFLK 145 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 333 34556788888876653
No 494
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=31.38 E-value=1.4e+02 Score=23.92 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQN 116 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~ 116 (281)
..+|..++..|++.+|+.+|-+||..-|.-..+..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~ 101 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQ 101 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 45799999999999999999999999887554433
No 495
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.36 E-value=4.6e+02 Score=24.82 Aligned_cols=92 Identities=14% Similarity=0.054 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHhhh---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc
Q 023491 21 GRYEEALGFYTEALSVAK---IKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH------TGALMLRAQTLVTL 91 (281)
Q Consensus 21 gdy~eAl~~y~~aL~~~~---~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~------~~a~~~lg~a~~~~ 91 (281)
+.-.+-++-+.+.|+... .......++.|+|..|.+.++.+.+.+++.+.++-+-.. .-+-.++|.+|..+
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence 334455555666665433 123457889999999999999999999999887655321 12445667777777
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 023491 92 KEYNSALFDVNRLIELNPSSE 112 (281)
Q Consensus 92 g~~~eAl~~~ekAL~ldP~~~ 112 (281)
.-..+.++...-.++...++.
T Consensus 169 ~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 169 KVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHHHhCCCHH
Confidence 667777777777777766654
No 496
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.03 E-value=3.8e+02 Score=33.31 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHcC-CHHHHHHHHHHH-HHhcCC--CHHHH
Q 023491 7 PANKIERAHQLYRDGRYEEALGFYTEALSVAKIKQ-QKIALHSNRAACYLKLH-DFKKAAEECTSV-LELDYN--HTGAL 81 (281)
Q Consensus 7 a~~l~~~G~~~~~~gdy~eAl~~y~~aL~~~~~~p-~~~~a~~nra~~~~klg-~y~~Ai~~~~~a-l~i~p~--~~~a~ 81 (281)
|.+....|..+-+.|-+..++..+.+.-.+..-.- ....=+..-+.||+... .+..+++.+... +..-++ .+..+
T Consensus 2736 A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff 2815 (3550)
T KOG0889|consen 2736 AWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFF 2815 (3550)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHH
Confidence 45566678888889999999988888766421110 11222344567777665 666676666554 222222 34567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023491 82 MLRAQTLVTLKEYNSALFDVNRLIELNPSSEVYQNLQARLKTQ 124 (281)
Q Consensus 82 ~~lg~a~~~~g~~~eAl~~~ekAL~ldP~~~~a~~~l~~l~~~ 124 (281)
...|..+.++|++++|-+.|..|++++-.-..+|..-+.-...
T Consensus 2816 ~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2816 TLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred HhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7779999999999999999999999987776666655554433
No 497
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=30.87 E-value=1.5e+02 Score=31.60 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=8.3
Q ss_pred HHHHHHcCCHHHHHHHH
Q 023491 85 AQTLVTLKEYNSALFDV 101 (281)
Q Consensus 85 g~a~~~~g~~~eAl~~~ 101 (281)
+..|...|+|+-|...|
T Consensus 772 adhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELF 788 (1636)
T ss_pred HHHhccchhHHHHHHHH
Confidence 44444555555444444
No 498
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.73 E-value=1e+02 Score=22.80 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023491 59 DFKKAAEECTSVLELDYNHTGALMLRAQTLVTLKEYNSALFDVNRLIEL 107 (281)
Q Consensus 59 ~y~~Ai~~~~~al~i~p~~~~a~~~lg~a~~~~g~~~eAl~~~ekAL~l 107 (281)
.|+.|.....++|+.+ ..|+.+.|+.+|+++++.
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHH
Confidence 3556666666665544 346666666666666653
No 499
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.66 E-value=2.2e+02 Score=24.96 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC
Q 023491 45 ALHSNRAACYLKLHDFKKAAEECTSVLELDYNHTGALMLRAQ-TLVTLKEYNSALFDVNRLIELNP 109 (281)
Q Consensus 45 ~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~~~a~~~lg~-a~~~~g~~~eAl~~~ekAL~ldP 109 (281)
...+.+-......|+++.|-.+|.-+|+..+-+.+.+..+|. ++.+.+.-....+.|+.....-|
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 334445555566888888888888888887777777777766 55555555555466666555544
No 500
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=30.31 E-value=5.8e+02 Score=25.68 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcC
Q 023491 15 HQLYRDGRYEEALGFYTEALSVAKIKQQKIALHSNRAACYLKLHDFKKAAEECTSVLELDYNH--TGALMLRAQTLVTLK 92 (281)
Q Consensus 15 ~~~~~~gdy~eAl~~y~~aL~~~~~~p~~~~a~~nra~~~~klg~y~~Ai~~~~~al~i~p~~--~~a~~~lg~a~~~~g 92 (281)
..++..|++..|...|+-.+.. .++....-+..-..+...++-..|...|+.++..-... -..|-.+-..-...|
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G 516 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVG 516 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhc
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023491 93 EYNSALFDVNRLIELNPSSEVYQNLQAR 120 (281)
Q Consensus 93 ~~~eAl~~~ekAL~ldP~~~~a~~~l~~ 120 (281)
++..++..-++..++-|....+.....+
T Consensus 517 ~lN~v~sLe~rf~e~~pQen~~evF~Sr 544 (660)
T COG5107 517 SLNNVYSLEERFRELVPQENLIEVFTSR 544 (660)
T ss_pred chHHHHhHHHHHHHHcCcHhHHHHHHHH
Done!