Query 023492
Match_columns 281
No_of_seqs 133 out of 1362
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:27:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0053 MMT1 Predicted Co/Zn/C 100.0 2.9E-54 6.2E-59 377.5 34.2 265 2-273 24-294 (304)
2 PRK09509 fieF ferrous iron eff 100.0 5.8E-52 1.3E-56 364.8 35.0 262 2-270 22-288 (299)
3 PRK03557 zinc transporter ZitB 100.0 7.1E-51 1.5E-55 359.2 32.9 262 2-273 30-296 (312)
4 TIGR01297 CDF cation diffusion 100.0 8.1E-50 1.8E-54 346.9 32.0 261 2-269 1-268 (268)
5 COG1230 CzcD Co/Zn/Cd efflux s 100.0 7.9E-47 1.7E-51 323.3 29.1 259 2-270 33-295 (296)
6 PF01545 Cation_efflux: Cation 100.0 2E-46 4.3E-51 328.3 18.5 264 1-271 9-283 (284)
7 KOG1485 Mitochondrial Fe2+ tra 100.0 1.4E-43 3E-48 310.8 27.9 278 1-278 125-409 (412)
8 KOG1484 Putative Zn2+ transpor 100.0 3.5E-34 7.7E-39 243.8 23.5 258 2-271 46-349 (354)
9 KOG1483 Zn2+ transporter ZNT1 100.0 5.8E-35 1.3E-39 253.0 14.1 261 1-272 19-373 (404)
10 KOG1482 Zn2+ transporter [Inor 100.0 1.3E-33 2.8E-38 243.8 19.0 262 2-273 84-370 (379)
11 COG3965 Predicted Co/Zn/Cd cat 100.0 1.1E-30 2.3E-35 214.4 19.9 260 2-269 31-309 (314)
12 KOG2802 Membrane protein HUEL 99.7 5.4E-17 1.2E-21 139.9 14.9 163 3-174 219-406 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.1 2E-05 4.2E-10 69.6 9.2 79 5-91 135-213 (304)
14 TIGR01297 CDF cation diffusion 97.8 9.7E-05 2.1E-09 64.0 8.5 72 11-90 118-189 (268)
15 PRK09509 fieF ferrous iron eff 97.8 0.00015 3.3E-09 64.0 9.8 73 10-90 138-210 (299)
16 PRK03557 zinc transporter ZitB 97.1 0.003 6.4E-08 56.1 8.9 70 14-90 148-217 (312)
17 KOG1485 Mitochondrial Fe2+ tra 95.4 0.046 9.9E-07 49.5 6.7 74 9-90 249-322 (412)
18 PF14535 AMP-binding_C_2: AMP- 95.1 0.29 6.2E-06 35.4 8.9 72 197-270 7-80 (96)
19 PF03780 Asp23: Asp23 family; 94.2 0.74 1.6E-05 33.8 9.5 53 215-267 49-105 (108)
20 COG1230 CzcD Co/Zn/Cd efflux s 93.2 2.3 4.9E-05 37.4 12.1 67 123-189 45-119 (296)
21 COG4858 Uncharacterized membra 92.3 5.3 0.00011 32.4 12.6 104 70-177 102-211 (226)
22 PF01545 Cation_efflux: Cation 91.8 0.081 1.8E-06 46.1 1.4 69 16-90 134-202 (284)
23 PRK14637 hypothetical protein; 90.4 3.1 6.6E-05 32.8 8.9 87 192-281 7-93 (151)
24 PRK14647 hypothetical protein; 89.6 5.3 0.00012 31.7 9.9 84 195-281 10-94 (159)
25 COG0779 Uncharacterized protei 89.5 4.6 9.9E-05 31.9 9.2 84 195-281 10-94 (153)
26 PRK14634 hypothetical protein; 88.9 5.5 0.00012 31.5 9.4 85 194-281 8-95 (155)
27 PRK00092 ribosome maturation p 88.9 6.3 0.00014 31.1 9.8 84 195-281 9-93 (154)
28 PRK14638 hypothetical protein; 88.7 6.6 0.00014 30.9 9.7 84 195-281 10-95 (150)
29 PRK14635 hypothetical protein; 88.3 5 0.00011 32.0 8.9 70 211-281 20-94 (162)
30 PRK14640 hypothetical protein; 88.2 7.2 0.00016 30.7 9.6 84 195-281 8-92 (152)
31 PF09580 Spore_YhcN_YlaJ: Spor 88.1 4.2 9.1E-05 32.7 8.6 70 192-269 73-143 (177)
32 TIGR02898 spore_YhcN_YlaJ spor 87.7 5 0.00011 31.9 8.4 71 194-270 54-125 (158)
33 PRK14630 hypothetical protein; 87.2 9.1 0.0002 29.8 9.5 84 193-281 8-92 (143)
34 PRK05783 hypothetical protein; 86.2 9.6 0.00021 26.8 8.4 62 197-268 21-83 (84)
35 PRK14633 hypothetical protein; 86.0 12 0.00026 29.4 9.7 84 194-281 5-89 (150)
36 KOG1484 Putative Zn2+ transpor 85.5 26 0.00056 31.3 12.3 87 102-188 37-131 (354)
37 PRK14639 hypothetical protein; 85.4 8.8 0.00019 29.8 8.6 73 208-281 10-83 (140)
38 PRK14646 hypothetical protein; 84.6 12 0.00026 29.6 9.1 83 196-281 10-95 (155)
39 PRK14641 hypothetical protein; 83.0 16 0.00035 29.5 9.4 71 211-281 24-99 (173)
40 COG1302 Uncharacterized protei 82.4 20 0.00044 27.5 9.4 71 195-269 40-114 (131)
41 PF07444 Ycf66_N: Ycf66 protei 80.8 17 0.00037 25.6 9.5 47 133-179 32-81 (84)
42 PRK14645 hypothetical protein; 79.9 28 0.0006 27.5 9.9 84 195-281 11-97 (154)
43 COG1183 PssA Phosphatidylserin 79.8 37 0.0008 28.8 11.0 84 101-186 37-120 (234)
44 PRK14632 hypothetical protein; 79.4 27 0.00058 28.1 9.5 83 195-281 10-93 (172)
45 PF01883 DUF59: Domain of unkn 79.2 14 0.0003 24.7 6.8 38 225-264 34-72 (72)
46 PF09877 DUF2104: Predicted me 78.3 4.2 9.1E-05 29.2 4.0 33 34-73 65-97 (99)
47 PRK14643 hypothetical protein; 77.9 33 0.00072 27.4 9.5 83 196-281 12-99 (164)
48 PRK15031 5-carboxymethyl-2-hyd 77.7 24 0.00051 26.9 8.2 80 191-272 17-113 (126)
49 TIGR03406 FeS_long_SufT probab 77.3 24 0.00052 28.5 8.6 76 193-271 72-158 (174)
50 PF02576 DUF150: Uncharacteris 77.2 12 0.00027 28.9 6.8 70 211-280 11-81 (141)
51 PRK14631 hypothetical protein; 76.2 39 0.00085 27.3 9.7 82 197-281 12-112 (174)
52 PRK14636 hypothetical protein; 75.1 43 0.00093 27.1 9.7 85 194-281 6-93 (176)
53 PF02700 PurS: Phosphoribosylf 74.5 26 0.00056 24.3 9.1 62 196-267 18-79 (80)
54 cd04870 ACT_PSP_1 CT domains f 74.0 24 0.00052 23.7 8.2 67 192-268 9-75 (75)
55 cd04900 ACT_UUR-like_1 ACT dom 70.1 26 0.00057 23.4 6.4 42 192-236 11-52 (73)
56 PF10934 DUF2634: Protein of u 69.8 36 0.00078 25.2 7.5 50 183-233 53-107 (112)
57 TIGR02945 SUF_assoc FeS assemb 66.1 46 0.00099 23.8 9.4 46 223-271 37-82 (99)
58 PF13291 ACT_4: ACT domain; PD 66.0 38 0.00083 22.9 8.9 60 193-262 17-78 (80)
59 COG4035 Predicted membrane pro 66.0 11 0.00025 26.7 3.8 41 25-72 62-103 (108)
60 PRK00907 hypothetical protein; 65.6 33 0.00072 24.5 6.2 62 191-260 26-89 (92)
61 cd02411 archeal_30S_S3_KH K ho 64.3 26 0.00056 24.5 5.5 71 196-268 12-82 (85)
62 COG1828 PurS Phosphoribosylfor 64.0 47 0.001 23.2 7.5 62 197-268 20-81 (83)
63 PF13710 ACT_5: ACT domain; PD 63.0 33 0.00072 22.4 5.5 61 193-262 3-63 (63)
64 PRK11589 gcvR glycine cleavage 62.4 71 0.0015 26.2 8.5 70 193-272 106-181 (190)
65 TIGR00439 ftsX putative protei 61.5 85 0.0019 27.8 9.5 71 188-262 73-161 (309)
66 PRK11023 outer membrane lipopr 60.6 23 0.00051 28.9 5.4 69 186-268 81-151 (191)
67 PF03755 YicC_N: YicC-like fam 59.4 15 0.00033 29.0 4.0 46 223-271 27-72 (159)
68 cd00491 4Oxalocrotonate_Tautom 57.4 40 0.00088 21.1 5.2 48 229-276 3-52 (58)
69 PRK02001 hypothetical protein; 56.5 86 0.0019 24.7 7.7 66 211-281 20-85 (152)
70 PRK10334 mechanosensitive chan 55.4 1.4E+02 0.0031 26.1 9.8 78 194-272 200-283 (286)
71 COG2098 Uncharacterized protei 55.4 25 0.00053 25.9 4.1 35 238-272 35-69 (116)
72 TIGR03319 YmdA_YtgF conserved 55.3 40 0.00087 32.2 6.7 62 196-264 439-503 (514)
73 cd02413 40S_S3_KH K homology R 54.4 33 0.00071 23.9 4.5 55 198-253 6-63 (81)
74 PF00873 ACR_tran: AcrB/AcrD/A 53.1 38 0.00082 35.3 6.7 44 225-268 559-602 (1021)
75 PTZ00397 macrophage migration 52.8 91 0.002 23.0 7.8 84 193-277 18-111 (116)
76 TIGR03341 YhgI_GntY IscR-regul 52.7 1.3E+02 0.0028 24.7 8.7 74 192-267 103-181 (190)
77 PRK00745 4-oxalocrotonate taut 52.4 40 0.00086 21.6 4.5 49 229-277 4-54 (62)
78 PF02790 COX2_TM: Cytochrome C 52.2 67 0.0015 21.9 6.0 63 15-77 11-81 (84)
79 PRK02220 4-oxalocrotonate taut 51.7 42 0.0009 21.4 4.5 49 229-277 4-54 (61)
80 TIGR00915 2A0602 The (Largely 50.9 1.6E+02 0.0034 31.0 10.7 65 192-257 54-119 (1044)
81 COG4669 EscJ Type III secretor 50.8 1.6E+02 0.0034 25.1 9.4 73 195-272 110-193 (246)
82 TIGR00268 conserved hypothetic 50.3 65 0.0014 27.5 6.8 53 211-269 197-249 (252)
83 PRK00106 hypothetical protein; 50.2 41 0.00089 32.3 5.9 66 195-269 459-527 (535)
84 PRK02047 hypothetical protein; 50.1 90 0.002 22.2 6.6 62 191-260 25-88 (91)
85 PRK04998 hypothetical protein; 50.0 87 0.0019 22.0 6.3 61 192-260 25-85 (88)
86 PF00873 ACR_tran: AcrB/AcrD/A 49.0 28 0.00062 36.2 5.1 71 194-266 635-709 (1021)
87 PF01390 SEA: SEA domain; Int 48.0 30 0.00066 24.8 3.8 59 195-255 36-95 (107)
88 TIGR00473 pssA CDP-diacylglyce 47.6 1.4E+02 0.003 23.5 11.6 81 101-184 22-102 (151)
89 TIGR00013 taut 4-oxalocrotonat 47.2 59 0.0013 20.8 4.8 48 227-275 3-52 (63)
90 COG0841 AcrB Cation/multidrug 46.8 2.1E+02 0.0046 30.0 10.8 65 192-257 55-119 (1009)
91 PRK11152 ilvM acetolactate syn 46.2 95 0.0021 21.3 7.3 64 191-264 12-75 (76)
92 PRK01964 4-oxalocrotonate taut 45.8 50 0.0011 21.4 4.3 47 229-275 4-52 (64)
93 PRK12704 phosphodiesterase; Pr 45.4 55 0.0012 31.4 6.0 62 195-264 444-509 (520)
94 KOG1483 Zn2+ transporter ZNT1 44.5 2.1E+02 0.0045 26.3 9.0 66 123-188 32-105 (404)
95 cd02412 30S_S3_KH K homology R 44.0 92 0.002 22.8 5.8 56 212-268 50-105 (109)
96 COG2151 PaaD Predicted metal-s 43.2 1.4E+02 0.003 22.2 6.8 76 192-270 10-93 (111)
97 PF04455 Saccharop_dh_N: LOR/S 42.7 1.3E+02 0.0029 22.0 7.8 75 191-269 13-88 (103)
98 PRK10503 multidrug efflux syst 42.5 2.4E+02 0.0052 29.7 10.5 66 191-257 64-129 (1040)
99 PRK00341 hypothetical protein; 41.9 1.3E+02 0.0027 21.5 6.1 61 191-260 26-88 (91)
100 PRK04191 rps3p 30S ribosomal p 41.6 93 0.002 25.9 6.1 73 195-269 13-85 (207)
101 PRK10555 aminoglycoside/multid 41.2 3E+02 0.0064 29.0 11.0 65 191-257 53-119 (1037)
102 PRK09577 multidrug efflux prot 40.9 3.2E+02 0.007 28.7 11.2 65 191-257 53-118 (1032)
103 PF11381 DUF3185: Protein of u 40.6 1E+02 0.0022 20.1 5.5 47 62-113 6-55 (59)
104 PRK02289 4-oxalocrotonate taut 40.5 94 0.002 19.9 4.9 47 229-275 4-52 (60)
105 PRK10614 multidrug efflux syst 40.1 2.6E+02 0.0057 29.3 10.4 65 191-257 55-120 (1025)
106 COG1279 Lysine efflux permease 39.6 2.2E+02 0.0048 23.6 9.8 61 125-185 34-94 (202)
107 PRK09579 multidrug efflux prot 38.9 3E+02 0.0064 28.9 10.5 65 191-257 55-120 (1017)
108 PF01037 AsnC_trans_reg: AsnC 38.7 1.1E+02 0.0024 19.9 6.4 60 194-266 10-70 (74)
109 PRK06937 type III secretion sy 38.1 2.3E+02 0.0049 23.3 10.1 38 238-275 138-175 (204)
110 PRK09579 multidrug efflux prot 38.0 84 0.0018 32.9 6.4 72 193-266 622-694 (1017)
111 TIGR00489 aEF-1_beta translati 37.9 1.5E+02 0.0032 21.0 6.9 65 195-265 18-83 (88)
112 COG3518 Predicted component of 37.6 37 0.0008 26.9 2.9 35 238-272 82-117 (157)
113 PRK10597 DNA damage-inducible 37.6 1.2E+02 0.0027 21.1 5.2 38 227-264 3-42 (81)
114 cd04887 ACT_MalLac-Enz ACT_Mal 37.4 1.2E+02 0.0026 19.8 7.2 59 192-260 9-68 (74)
115 PRK15127 multidrug efflux syst 37.3 3E+02 0.0066 29.0 10.3 66 190-257 52-119 (1049)
116 PHA02568 J baseplate assembly 36.6 1.4E+02 0.0031 26.4 6.8 47 190-238 180-228 (300)
117 cd04869 ACT_GcvR_2 ACT domains 36.1 1.3E+02 0.0029 20.0 8.0 58 192-255 9-72 (81)
118 KOG1482 Zn2+ transporter [Inor 35.8 1.3E+02 0.0028 27.4 6.4 68 17-90 224-291 (379)
119 COG0581 PstA ABC-type phosphat 35.3 3.2E+02 0.0068 24.1 11.1 74 112-185 90-169 (292)
120 PF00403 HMA: Heavy-metal-asso 35.1 66 0.0014 20.4 3.5 26 243-268 10-35 (62)
121 TIGR03221 muco_delta muconolac 34.2 1.3E+02 0.0027 21.5 4.9 27 225-251 2-28 (90)
122 PRK00435 ef1B elongation facto 34.0 1.7E+02 0.0037 20.7 6.3 63 196-265 19-83 (88)
123 cd04888 ACT_PheB-BS C-terminal 33.4 1.4E+02 0.003 19.5 7.6 63 193-264 11-74 (76)
124 PRK15082 glutathione ABC trans 33.3 3.4E+02 0.0073 23.8 12.0 54 132-187 134-189 (301)
125 COG4669 EscJ Type III secretor 32.1 98 0.0021 26.3 4.7 38 243-280 108-147 (246)
126 cd04927 ACT_ACR-like_2 Second 32.0 1.6E+02 0.0035 19.8 8.1 59 192-253 10-71 (76)
127 PF01106 NifU: NifU-like domai 31.6 1.6E+02 0.0034 19.6 6.0 60 194-262 3-65 (68)
128 TIGR02790 nickel_nikC nickel A 31.5 3.3E+02 0.0071 23.2 11.8 13 45-57 36-48 (258)
129 PF11654 DUF2665: Protein of u 31.2 54 0.0012 20.3 2.3 18 156-173 4-21 (47)
130 PRK15385 magnesium transport p 30.8 3.3E+02 0.0071 23.0 10.9 66 195-268 157-224 (225)
131 TIGR02155 PA_CoA_ligase phenyl 30.8 4.1E+02 0.0089 24.2 9.3 70 197-268 331-404 (422)
132 PRK10503 multidrug efflux syst 30.7 1.4E+02 0.003 31.4 6.6 44 224-267 567-610 (1040)
133 PF02426 MIase: Muconolactone 29.7 1.6E+02 0.0035 21.0 4.9 28 225-252 3-30 (91)
134 PF11023 DUF2614: Protein of u 29.3 2.4E+02 0.0052 21.0 5.8 46 67-120 15-60 (114)
135 TIGR00914 2A0601 heavy metal e 29.3 3.8E+02 0.0082 28.2 9.6 65 191-257 57-122 (1051)
136 PF12327 FtsZ_C: FtsZ family, 29.3 1.4E+02 0.0031 21.2 4.7 68 192-270 13-81 (95)
137 PF07876 Dabb: Stress responsi 29.3 2E+02 0.0043 19.9 6.5 43 229-271 5-47 (97)
138 PF04102 SlyX: SlyX; InterPro 29.2 60 0.0013 21.7 2.6 12 270-281 58-69 (69)
139 PRK14128 iraD DNA replication/ 29.0 1.3E+02 0.0028 20.2 4.1 31 240-270 7-38 (69)
140 PRK05974 phosphoribosylformylg 28.9 1.9E+02 0.0042 19.8 7.7 62 197-268 19-80 (80)
141 TIGR02544 III_secr_YscJ type I 28.8 3.3E+02 0.0071 22.3 8.3 73 195-270 108-189 (193)
142 PRK10555 aminoglycoside/multid 28.3 3.1E+02 0.0068 28.8 8.7 30 236-265 148-178 (1037)
143 PRK11895 ilvH acetolactate syn 28.0 3.1E+02 0.0067 21.8 7.4 64 192-264 12-75 (161)
144 TIGR00915 2A0602 The (Largely 28.0 3.4E+02 0.0073 28.6 8.9 45 220-264 131-177 (1044)
145 PF06635 NolV: Nodulation prot 27.7 3.6E+02 0.0078 22.4 8.1 77 177-275 97-174 (207)
146 PRK06737 acetolactate synthase 27.6 2.1E+02 0.0045 19.6 6.9 62 192-262 12-73 (76)
147 PF13193 AMP-binding_C: AMP-bi 27.6 1.8E+02 0.004 19.0 7.0 50 198-255 1-50 (73)
148 KOG3415 Putative Rab5-interact 27.5 2.6E+02 0.0057 20.8 7.2 43 5-47 51-93 (129)
149 cd04899 ACT_ACR-UUR-like_2 C-t 27.4 1.7E+02 0.0037 18.7 7.3 58 192-254 10-67 (70)
150 PF04972 BON: BON domain; Int 27.3 38 0.00081 21.8 1.3 29 186-215 30-58 (64)
151 PF14552 Tautomerase_2: Tautom 27.2 91 0.002 21.7 3.2 50 225-274 28-79 (82)
152 PRK11179 DNA-binding transcrip 27.1 3E+02 0.0065 21.3 6.8 62 194-268 81-143 (153)
153 PRK09881 D-ala-D-ala transport 26.6 4.4E+02 0.0095 23.1 11.7 11 46-56 69-79 (296)
154 cd04875 ACT_F4HF-DF N-terminal 26.5 1.9E+02 0.0042 19.0 7.4 55 192-249 9-66 (74)
155 cd04925 ACT_ACR_2 ACT domain-c 26.4 2E+02 0.0044 19.1 8.5 59 192-253 10-72 (74)
156 PF01361 Tautomerase: Tautomer 26.2 1.3E+02 0.0028 19.0 3.7 48 230-277 4-53 (60)
157 PRK09577 multidrug efflux prot 26.1 1.8E+02 0.0039 30.5 6.5 41 224-264 566-606 (1032)
158 PF04359 DUF493: Protein of un 26.1 35 0.00076 23.7 1.0 61 192-260 20-82 (85)
159 COG2921 Uncharacterized conser 25.9 2.5E+02 0.0053 20.0 6.6 61 191-259 24-86 (90)
160 COG0841 AcrB Cation/multidrug 25.8 4E+02 0.0088 28.0 8.8 68 195-265 107-176 (1009)
161 PF12984 DUF3868: Domain of un 25.7 1.6E+02 0.0035 21.8 4.6 28 208-235 27-54 (115)
162 TIGR01008 rpsC_E_A ribosomal p 25.5 2.1E+02 0.0046 23.5 5.6 57 196-253 12-71 (195)
163 PF10646 Germane: Sporulation 25.1 2.5E+02 0.0055 20.2 5.7 46 225-270 66-112 (117)
164 TIGR00119 acolac_sm acetolacta 24.7 3.5E+02 0.0077 21.3 7.6 64 192-264 11-74 (157)
165 PRK11190 Fe/S biogenesis prote 24.7 3.9E+02 0.0085 21.9 8.9 69 192-263 104-179 (192)
166 cd04872 ACT_1ZPV ACT domain pr 24.3 2.4E+02 0.0053 19.3 5.5 58 192-255 11-69 (88)
167 PF04219 DUF413: Protein of un 24.2 38 0.00083 24.3 0.9 12 47-58 4-15 (93)
168 COG3965 Predicted Co/Zn/Cd cat 23.9 4.9E+02 0.011 22.7 7.8 20 156-175 119-138 (314)
169 PF00408 PGM_PMM_IV: Phosphogl 23.9 2.3E+02 0.0049 18.8 5.5 35 217-254 39-73 (73)
170 PRK10913 dipeptide transporter 23.3 5.1E+02 0.011 22.7 12.5 55 132-187 133-188 (300)
171 cd04928 ACT_TyrKc Uncharacteri 23.3 2.4E+02 0.0051 18.8 7.0 57 192-253 11-67 (68)
172 PRK04439 S-adenosylmethionine 23.1 3.1E+02 0.0068 25.3 6.6 62 196-257 319-385 (399)
173 PRK02119 hypothetical protein; 23.0 1.8E+02 0.0038 19.7 4.0 10 272-281 64-73 (73)
174 MTH00140 COX2 cytochrome c oxi 22.4 4.7E+02 0.01 21.9 7.8 29 49-77 52-80 (228)
175 PRK02793 phi X174 lysis protei 22.4 1.9E+02 0.004 19.6 4.0 10 272-281 63-72 (72)
176 TIGR00255 conserved hypothetic 22.3 1.4E+02 0.0031 26.2 4.3 45 223-270 28-72 (291)
177 PRK09098 type III secretion sy 21.9 4.9E+02 0.011 22.0 8.8 79 177-275 117-195 (233)
178 PRK10245 adrA diguanylate cycl 21.6 6E+02 0.013 22.9 8.7 59 188-255 255-313 (366)
179 PF13740 ACT_6: ACT domain; PD 21.3 2.6E+02 0.0057 18.6 9.3 57 192-255 12-68 (76)
180 PRK00736 hypothetical protein; 21.1 1.1E+02 0.0024 20.4 2.7 10 272-281 59-68 (68)
181 cd00580 CHMI 5-carboxymethyl-2 21.1 3.4E+02 0.0073 19.8 9.8 76 192-269 17-109 (113)
182 PRK00194 hypothetical protein; 21.1 2.9E+02 0.0062 18.9 5.6 54 192-251 13-67 (90)
183 PF04965 GPW_gp25: Gene 25-lik 21.0 2E+02 0.0043 20.2 4.2 33 238-270 42-75 (99)
184 PF06570 DUF1129: Protein of u 20.8 4.8E+02 0.01 21.4 15.0 29 62-90 79-107 (206)
185 PF10777 YlaC: Inner membrane 20.7 3E+02 0.0065 21.6 5.2 40 180-221 112-152 (155)
186 COG2177 FtsX Cell division pro 20.5 1.8E+02 0.0039 25.7 4.6 34 225-264 59-92 (297)
187 PRK10568 periplasmic protein; 20.5 2.8E+02 0.006 22.9 5.5 73 185-268 90-165 (203)
188 PRK00295 hypothetical protein; 20.5 1.1E+02 0.0024 20.4 2.5 10 272-281 59-68 (68)
189 PRK04406 hypothetical protein; 20.3 1.3E+02 0.0027 20.6 2.8 10 272-281 66-75 (75)
190 COG3696 Putative silver efflux 20.2 1.2E+02 0.0026 31.2 3.6 77 193-271 633-713 (1027)
191 TIGR02610 PHA_gran_rgn putativ 20.2 1.9E+02 0.004 20.6 3.8 32 228-259 3-34 (91)
192 KOG3320 40S ribosomal protein 20.1 4.8E+02 0.01 21.2 7.3 73 190-265 14-96 (192)
193 PRK02935 hypothetical protein; 20.0 3.7E+02 0.0079 19.8 6.4 19 102-120 43-61 (110)
No 1
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-54 Score=377.48 Aligned_cols=265 Identities=25% Similarity=0.444 Sum_probs=248.7
Q ss_pred hhhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 023492 2 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILES 81 (281)
Q Consensus 2 ~~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~es 81 (281)
.+++.|+++|+++||.||+|||+||+.|++++++++++.++++||||++|||||+|+|++++++.+++++++|+.+++++
T Consensus 24 ~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~sl~~~~~i~~~g~~i~~~a 103 (304)
T COG0053 24 ALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLASLIVSILIFAAGFEILLEA 103 (304)
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH----HhCCHHHHHhHHhhhHHHHHHHHHHHHHHHHhhh-c
Q 023492 82 LRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR----AFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYI-D 156 (281)
Q Consensus 82 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~~-~ 156 (281)
+.++++|.+. ++.+++++++.++.++++++++|.+ |.+|+.++++++|+++|+++| ++++++++..++ |
T Consensus 104 ~~~~~~~~~~-----~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts-~~~lvgl~~~~~g~ 177 (304)
T COG0053 104 IKRLISPQPV-----EPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTS-LAVLVGLLGSLLGW 177 (304)
T ss_pred HHHHhCCCCC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHH-HHHHHHHHHHHhCc
Confidence 9999997762 4467889999999999999999975 479999999999999999997 777888776666 6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCC
Q 023492 157 DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS 236 (281)
Q Consensus 157 ~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~ 236 (281)
+|+||+++++|++++++++++++|++.+.|+|+.+|++..+++++.+.+ .|||.++|++|.|+.|+.+++++|++++++
T Consensus 178 ~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~-~~~V~~v~~lr~R~~G~~~~id~~i~v~~~ 256 (304)
T COG0053 178 PWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILS-VPGVKGVHDLRTRKSGSRIFIDVHIEVDPD 256 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhc-CCcceeeecceeeeeCCeEEEEEEEEECCC
Confidence 9999999999999999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCCceeEEEEeeccCCCC
Q 023492 237 MPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEYTHR 273 (281)
Q Consensus 237 ~~~~~~~~i~~~i~~~l~~-~~~i~~v~i~iep~~~~~ 273 (281)
++++|+|++.+++++.+++ .|.+.+++||+||.....
T Consensus 257 ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~ 294 (304)
T COG0053 257 LSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKE 294 (304)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 9999999999999999986 555999999999997543
No 2
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=5.8e-52 Score=364.84 Aligned_cols=262 Identities=19% Similarity=0.247 Sum_probs=238.4
Q ss_pred hhhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 023492 2 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILES 81 (281)
Q Consensus 2 ~~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~es 81 (281)
+++++|+++|+++||.|+++||+|++.|++++++++++.+.++||+|++|||||+|+|+++++++++++++.++++++||
T Consensus 22 ~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~es 101 (299)
T PRK09509 22 LLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSMFISGSALFLFLTG 101 (299)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH----HhCCHHHHHhHHhhhHHHHHHHHHHHHHHHHhhh-c
Q 023492 82 LRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCR----AFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYI-D 156 (281)
Q Consensus 82 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~~-~ 156 (281)
++++++|++. +....+++++.++.++|.+++++.+ +.+|+++++++.|+++|+++| +++++++++.++ |
T Consensus 102 i~~l~~~~~~-----~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s-~~vl~~~~~~~~g~ 175 (299)
T PRK09509 102 IQHLISPTPM-----NDPGVGIIVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMN-GAILLALGLSWYGW 175 (299)
T ss_pred HHHHcCCCCC-----CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCh
Confidence 9999998762 2234556677777888887766654 578999999999999999997 677777766655 7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCC
Q 023492 157 DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS 236 (281)
Q Consensus 157 ~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~ 236 (281)
+|+||++++++++++++.+++++|++.+.|+|+++|++..++|++.+++ .|||.++|++|+|+.|++.++++|++++++
T Consensus 176 ~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~-~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~ 254 (299)
T PRK09509 176 HRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTS-WPGVSGAHDLRTRQSGPTRFIQLHLEMEDN 254 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh-CCCCcCceeeeeEeeCCeEEEEEEEEECCC
Confidence 8999999999999999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccC
Q 023492 237 MPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 270 (281)
Q Consensus 237 ~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~ 270 (281)
++++|+|++++++++.+++..+..+++||+||+.
T Consensus 255 ~~~~e~h~i~~~ie~~l~~~~~~~~v~ihveP~~ 288 (299)
T PRK09509 255 LPLVQAHMIADQVEQALLRRFPGSDVIIHQDPCS 288 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 9999999999999999976433457999999975
No 3
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=7.1e-51 Score=359.20 Aligned_cols=262 Identities=17% Similarity=0.228 Sum_probs=230.5
Q ss_pred hhhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 023492 2 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILES 81 (281)
Q Consensus 2 ~~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~es 81 (281)
+++++|+++|+++||.|+++||+|++.|++++++++++.++++||+|++|||||+|+|++++++++++++++++++++||
T Consensus 30 ~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~l~~~~~~i~~ea 109 (312)
T PRK03557 30 GFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVITILIVWEA 109 (312)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHhHHhhhHHHHHHHHHHHHHH-HHhhh-c
Q 023492 82 LRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA---FTNEIVKAYAQDHFFDVITNIIGLVAVL-LANYI-D 156 (281)
Q Consensus 82 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~s~~l~a~~~~~~~D~~~s~~~v~~~~-~~~~~-~ 156 (281)
++++++|.+ + . ..+++++++.+.++|.+++++.++ .+|.+++++++|+++|+++| ++++++. +..++ |
T Consensus 110 i~~l~~~~~-~----~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s-~~vlv~~~~~~~~g~ 182 (312)
T PRK03557 110 IERFRTPRP-V----A-GGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGS-VGAIIAALIIIWTGW 182 (312)
T ss_pred HHHHcCCcc-c----c-chHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 999998765 1 1 245556667777888877776554 46889999999999999997 5555544 44443 6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCC
Q 023492 157 DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS 236 (281)
Q Consensus 157 ~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~ 236 (281)
+|+||++++++++++++.+++++|++++.|+|.+||++..+++++.+.+..|||+++|++|+|+.|+++++++|++++++
T Consensus 183 ~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~G~~~~v~~hv~v~~~ 262 (312)
T PRK03557 183 TPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPP 262 (312)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEeCCeEEEEEEEEECCC
Confidence 89999999999999999999999999999999988877788998877434899999999999999999999999999887
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCCC
Q 023492 237 MPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHR 273 (281)
Q Consensus 237 ~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~~~ 273 (281)
. +.+++++++++.+++.+++.++|||+||+.++.
T Consensus 263 ~---~~~~i~~~i~~~l~~~~~i~~vtIh~e~~~~~~ 296 (312)
T PRK03557 263 H---DHDALLDRIQDYLMHHYQIEHATIQMEYQPCHG 296 (312)
T ss_pred C---CHHHHHHHHHHHHHHhCCCCEEEEEeccCcCCC
Confidence 5 568999999999987678999999999986443
No 4
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=8.1e-50 Score=346.93 Aligned_cols=261 Identities=21% Similarity=0.376 Sum_probs=238.6
Q ss_pred hhhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 023492 2 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILES 81 (281)
Q Consensus 2 ~~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~es 81 (281)
+++++|+++|+++||.++++||+|++.|++++++++++.+.++||||++|||||+|+|+++++++++++++.++++++++
T Consensus 1 ~l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~s 80 (268)
T TIGR01297 1 LLMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEA 80 (268)
T ss_pred CEEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHhHHhhhHHHHHHHHHHHHHHHHhhh-c
Q 023492 82 LRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVITNIIGLVAVLLANYI-D 156 (281)
Q Consensus 82 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~~-~ 156 (281)
++++++|++. ....+++.++.++.++|.+++++.++ .+|+++++++.|+++|.++| ++++++..+..+ +
T Consensus 81 i~~l~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s-~~vli~~~~~~~~~ 154 (268)
T TIGR01297 81 IERLINPEPE-----IDGGTMLIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSS-VGVLIGALLIYFGW 154 (268)
T ss_pred HHHHhCCCCc-----ccchhHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 9999987642 23456677788888899998888765 67899999999999999997 566665555444 7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecC-eEEEEEEEEcCC
Q 023492 157 DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS-HYFVEVDIVLPA 235 (281)
Q Consensus 157 ~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~-~~~v~~~i~v~~ 235 (281)
+|+||++++++++++++.+++++|++...|+|.+||++..+++++.+++ .|||.++|++|+|+.|+ ++++++|+++++
T Consensus 155 ~~~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~ 233 (268)
T TIGR01297 155 HWADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILS-IPGVKGVHDLHIWRIGPGKLFLDVHVVVDP 233 (268)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhc-CCCcccceEeEEEEcCCCCEEEEEEEEECC
Confidence 8999999999999999999999999999999999889999999999986 89999999999999999 799999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-cCCCceeEEEEeecc
Q 023492 236 SMPLQEAHDIGESLQEKLE-LLPEIERAFVHLDYE 269 (281)
Q Consensus 236 ~~~~~~~~~i~~~i~~~l~-~~~~i~~v~i~iep~ 269 (281)
+++++|+|++.+++++.++ +.|++.+++||+||+
T Consensus 234 ~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 234 DLDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred CCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 9999999999999999996 569999999999994
No 5
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-47 Score=323.35 Aligned_cols=259 Identities=15% Similarity=0.223 Sum_probs=231.6
Q ss_pred hhhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 023492 2 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILES 81 (281)
Q Consensus 2 ~~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~es 81 (281)
+++++|+++|+++||+||+||++|+++|+++.++++++.+.++|+++++|||||+|+|.+++++++++++..++++++|+
T Consensus 33 ~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EA 112 (296)
T COG1230 33 AFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEA 112 (296)
T ss_pred HHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHHhHHhhhHHHHHHHHHHHHHHHHhhh-ccc
Q 023492 82 LRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAF--TNEIVKAYAQDHFFDVITNIIGLVAVLLANYI-DDW 158 (281)
Q Consensus 82 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~~-~~~ 158 (281)
++|+++|.+ .+...++.++++++++|....+..++. ++.++++...|.++|+++|..+++++++..++ |+|
T Consensus 113 i~R~~~P~~------i~~~~ml~va~~GL~vN~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~w~~ 186 (296)
T COG1230 113 IQRLLAPPP------IHYSGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYLHVLGDALGSVGVIIAAIVIRFTGWSW 186 (296)
T ss_pred HHHhcCCCC------CCccchHHHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999988 223678889999999999998888775 46899999999999999984444444555555 789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCCC
Q 023492 159 MDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASM 237 (281)
Q Consensus 159 ~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~~ 237 (281)
+||+++++++++++..+++++|++.+.|++..|+....+++++.+.+ .|||.++||+|+|+.+++ ...++|+++++..
T Consensus 187 ~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~-~~~v~~vhdlHvWsi~~~~~~~t~Hv~v~~~~ 265 (296)
T COG1230 187 LDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLR-IPGVASVHDLHVWSITGGEHALTLHVVVDEVA 265 (296)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhc-CCCccceeecccCCCCCCceeEEEEEEecCcc
Confidence 99999999999999999999999999999988877889999999985 899999999999999765 8999999999544
Q ss_pred CHHHHHHHHHHHHHHHhcCCCceeEEEEeeccC
Q 023492 238 PLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 270 (281)
Q Consensus 238 ~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~ 270 (281)
+.+ +..+++++.+.+.+++.++|+|+|+..
T Consensus 266 ~~~---~~~~~~~~~l~~~~~I~hvTiQ~e~~~ 295 (296)
T COG1230 266 DAD---AALDQIVRRLLEKYGIEHVTIQLETEG 295 (296)
T ss_pred chH---HHHHHHHHHHhhhcCcceEEEEecCCC
Confidence 332 388888888887789999999999874
No 6
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=2e-46 Score=328.27 Aligned_cols=264 Identities=27% Similarity=0.485 Sum_probs=228.3
Q ss_pred ChhhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 023492 1 MVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILE 80 (281)
Q Consensus 1 ~~~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~e 80 (281)
++++++|+++|+.+||.++++|++|++.|+++.++++++.+.++||+|++|||||+|+|++++++.++++++.++.++++
T Consensus 9 ~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~~~~~~~~~ 88 (284)
T PF01545_consen 9 LILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIFLGLFLIVE 88 (284)
T ss_dssp CCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhhhHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----hC--CHHHHHhHHhhhHHHHHHHHHHHHHHHHhh
Q 023492 81 SLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FT--NEIVKAYAQDHFFDVITNIIGLVAVLLANY 154 (281)
Q Consensus 81 si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~--s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~ 154 (281)
++++++++++. ....+.+.+++++.++|..++++.+| .+ |+.+++++.+++.|.+.| ++++++.++..
T Consensus 89 si~~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s-~~v~i~~~~~~ 162 (284)
T PF01545_consen 89 SIQRLISPHEP-----SPPGIVLIVALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSS-LAVLISLLLAY 162 (284)
T ss_dssp HTTTSSSSSSS-----STTTS-THHHHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-S-STS-SSSTSSS
T ss_pred Hhhcccccccc-----hhhhhhhhhhhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHH-HHHHHHHHHHH
Confidence 99999998652 22233444477788888888887765 45 999999999999999997 66666655544
Q ss_pred h--cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecC-eEEEEEE
Q 023492 155 I--DD-WMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGS-HYFVEVD 230 (281)
Q Consensus 155 ~--~~-~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~-~~~v~~~ 230 (281)
+ +. |+||++++++++++++.+++++|++...|+|.+||++..+++++.+++ .|++.+++++|+|+.|+ ++++++|
T Consensus 163 ~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~g~~~~~v~i~ 241 (284)
T PF01545_consen 163 LGPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIES-VPGVIEVHDLRVWQVGRNKYVVEIH 241 (284)
T ss_dssp TT-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHH-TSS-SEEEEEEEEEETT-EEEEEEE
T ss_pred HHhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhcc-CCceEeccceEEEEecCCcEEEEEE
Confidence 4 34 599999999999999999999999999999998899999999999987 89999999999999999 7999999
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHHhc-CCCceeEEEEeeccCC
Q 023492 231 IVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEYT 271 (281)
Q Consensus 231 i~v~~~~~~~~~~~i~~~i~~~l~~-~~~i~~v~i~iep~~~ 271 (281)
++++++++++|++++++++++.+++ ++++.+++||+||+.+
T Consensus 242 v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 242 VQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE 283 (284)
T ss_dssp EEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 9999999999999999999999975 7899999999999864
No 7
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=310.76 Aligned_cols=278 Identities=52% Similarity=0.817 Sum_probs=254.1
Q ss_pred ChhhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 023492 1 MVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILE 80 (281)
Q Consensus 1 ~~~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~e 80 (281)
++++++|+++|+.+||+|++||++|++.|.++.+++++..+.++++++.+||+|++|+|+++.+..+.+|.++|..++.+
T Consensus 125 igl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~iMa~agv~ii~s 204 (412)
T KOG1485|consen 125 IGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSVIMAMAGVQIIWS 204 (412)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccc-cccch-----hhHHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHhHHhhhHHHHHHHHHHHHHHHHh
Q 023492 81 SLRTLVSNEDQF-NLTKE-----QEQWVVGIMLSVTLVKLLLVVYCRAF-TNEIVKAYAQDHFFDVITNIIGLVAVLLAN 153 (281)
Q Consensus 81 si~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~-~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~ 153 (281)
|+.++.+|.... +.++. ..+|.+++++....+++.+++++++. +|..+++.|+|+++|+++|+++++++.+..
T Consensus 205 Sl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~ 284 (412)
T KOG1485|consen 205 SLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAY 284 (412)
T ss_pred hHHhhhcccccccccCchhhcccchhhhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999998843322 11111 12377778888888999999998765 559999999999999999999999999998
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEc
Q 023492 154 YIDDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVL 233 (281)
Q Consensus 154 ~~~~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v 233 (281)
++|+|+||++++++|.+++++|.+...+++++|.|++.|||.++++...+.++-+.++.++.++.+..|..+.+++|+++
T Consensus 285 ~~~~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~g~~~~Vev~ivl 364 (412)
T KOG1485|consen 285 YYNYWLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTFGSHYFVEVHIVL 364 (412)
T ss_pred hhhhcccchhhhhhheehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeecccceEEEEEeeec
Confidence 89999999999999999999999999999999999999999999999999886668899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCCCCcccc
Q 023492 234 PASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRPEHAQ 278 (281)
Q Consensus 234 ~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~~~~~~~~ 278 (281)
++++++.++|++.+-+++.|+..|.+.++.+|+|.+..+.|++..
T Consensus 365 ~~~~~l~~ah~i~E~lq~~ie~l~ever~fvh~d~e~~hr~~~~~ 409 (412)
T KOG1485|consen 365 DEDLSLSVAHDIGETLQKKIELLPEVERAFVHIDYEFLHRPHHEH 409 (412)
T ss_pred CCCCccHHHHHHHHHHHHHHhhcchheeeeeecCccccCCchHhh
Confidence 999999999999999999999999999999999999988888764
No 8
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-34 Score=243.77 Aligned_cols=258 Identities=14% Similarity=0.196 Sum_probs=213.7
Q ss_pred hhhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 023492 2 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILES 81 (281)
Q Consensus 2 ~~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~es 81 (281)
.++..+++.+..+||..+++|++|+++|+.+..+.+++..++++|++.+||||++|+|.++++.+++++.+.+++++.|+
T Consensus 46 ~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~a~fi~~Es 125 (354)
T KOG1484|consen 46 AFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLIAFFIFSES 125 (354)
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH-----h---------------------------------
Q 023492 82 LRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA-----F--------------------------------- 123 (281)
Q Consensus 82 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~--------------------------------- 123 (281)
++|+++|.. . ..+-...++..+.++|.+-.+..+. .
T Consensus 126 ~eRl~~ppe---i---~t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~~~~~~~~~~~~i 199 (354)
T KOG1484|consen 126 VERLFDPPE---I---HTNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLGVWDLHHHAHGHI 199 (354)
T ss_pred HHHhcCchh---c---CCceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhcccccccccccccccccccc
Confidence 999999854 2 1223334455555566553322211 0
Q ss_pred ---CCHHHHHhHHhhhHHHHHHHHHHHHHHHH-hhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Q 023492 124 ---TNEIVKAYAQDHFFDVITNIIGLVAVLLA-NYI-DDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQK 198 (281)
Q Consensus 124 ---~s~~l~a~~~~~~~D~~~s~~~v~~~~~~-~~~-~~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~ 198 (281)
.+..+.....|.++|.+.| ++++++.+. .++ |.++||+++++|+..++.+.++++|++.+.||++ .||+..++
T Consensus 200 ~g~~~~~m~gifLHVLaDtlgS-vGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~-tPp~~~~~ 277 (354)
T KOG1484|consen 200 HGHSHENMPGIFLHVLADTLGS-VGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQR-TPPHLENS 277 (354)
T ss_pred CCcccccccchhHHHHHHHhcc-hHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChhhhhH
Confidence 1122446678999999997 677766555 444 7899999999999999999999999999999996 56777777
Q ss_pred HHHHHhh--cCCCcceeeeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCC
Q 023492 199 LTYLCWN--HHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYT 271 (281)
Q Consensus 199 i~~~i~~--~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~ 271 (281)
+.+++++ ..+||.++.+-|+|+.+++ +...+|++|..|. +.+.+.+++.+++++. ++++.|+|+|.+..
T Consensus 278 l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~da---de~~vl~~V~~~~~~~-gV~~ltvQv~~~~~ 349 (354)
T KOG1484|consen 278 LKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDA---DEQSVLAHVTRKLEDA-GVKDLTVQVEKENS 349 (354)
T ss_pred HHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCc---chhHHHHHHHHHHHhc-ceeEEEEEEecccc
Confidence 7776655 3789999999999999987 9999999999886 3467888998888875 79999999888753
No 9
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-35 Score=252.97 Aligned_cols=261 Identities=16% Similarity=0.214 Sum_probs=215.3
Q ss_pred ChhhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 023492 1 MVLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILE 80 (281)
Q Consensus 1 ~~~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~e 80 (281)
++++++|++.|+.++|+||++|++|++.|+++.++++++.+.+++.+++++||||.|.|.++++++++|+....+.++.|
T Consensus 19 iiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~alc~~I~~E 98 (404)
T KOG1483|consen 19 IIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTALCVSILIE 98 (404)
T ss_pred HHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999977799999999999999999999999999999999
Q ss_pred HHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------
Q 023492 81 SLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA-------------------------------------- 122 (281)
Q Consensus 81 si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------------------- 122 (281)
+++|+++|... +.+...+.+++++.+.|.+-......
T Consensus 99 A~~R~I~p~~i-----~~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~~~~~G~~t~ 173 (404)
T KOG1483|consen 99 AIERIIEPHHI-----ENPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLHSHAIGCNTL 173 (404)
T ss_pred HHHhhcCCccc-----cCceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCCchhccCCcch
Confidence 99999998873 33344445555555555532211100
Q ss_pred --------------------------------------------------hCCHHHHHhHHhhhHHHHHHHHHHHHHHHH
Q 023492 123 --------------------------------------------------FTNEIVKAYAQDHFFDVITNIIGLVAVLLA 152 (281)
Q Consensus 123 --------------------------------------------------~~s~~l~a~~~~~~~D~~~s~~~v~~~~~~ 152 (281)
.++.+++....|.+.|++.+ +.++.+.+.
T Consensus 174 ~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~-I~Vi~~A~~ 252 (404)
T KOG1483|consen 174 AKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGS-IIVIVSALF 252 (404)
T ss_pred hhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccc-eEEEEEEEE
Confidence 01122344466788899987 555544444
Q ss_pred hhh----c-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEe-cCeEE
Q 023492 153 NYI----D-DWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYF 226 (281)
Q Consensus 153 ~~~----~-~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~-g~~~~ 226 (281)
.|+ | .|+||++|++++.+++.++|+++|++...|++..|..-..+++++.+.+ +|||.++||+++|++ |..+.
T Consensus 253 v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~-~~gv~~vh~lhvWqL~~~r~I 331 (404)
T KOG1483|consen 253 VYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLT-VPGVISVHDLHVWQLAGSRII 331 (404)
T ss_pred EEecceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhc-CcceeeeeeeeeeeeccceEE
Confidence 333 3 6899999999999999999999999999999988777789999999987 999999999999999 56699
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCC
Q 023492 227 VEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTH 272 (281)
Q Consensus 227 v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~~ 272 (281)
.++||+++ ...+..+++++||+.++++ |++.+|||+|.....
T Consensus 332 At~Hi~~~---~p~~~~~~a~~ir~~fh~~-GIhs~TiqPeF~~~~ 373 (404)
T KOG1483|consen 332 ATIHIQIQ---NPKEYMKIAEKIRSYFHDQ-GIHSTTIQPEFAPTC 373 (404)
T ss_pred EEEEEEec---CcHHHHHHHHHHHHHHHhc-CCcceeeccchhhhc
Confidence 99999997 3345669999999999985 999999999988743
No 10
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-33 Score=243.77 Aligned_cols=262 Identities=15% Similarity=0.204 Sum_probs=230.3
Q ss_pred hhhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 023492 2 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILES 81 (281)
Q Consensus 2 ~~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~es 81 (281)
.+.+.|++.|+..||+|+++||-|-+.|..+..+++++.+.+.+|+++|.+|||.|+|.+++++.-..+.+....+++++
T Consensus 84 ~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~A 163 (379)
T KOG1482|consen 84 VFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEA 163 (379)
T ss_pred HHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH------hC---------------CHHHHHhHHhhhHHHH
Q 023492 82 LRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA------FT---------------NEIVKAYAQDHFFDVI 140 (281)
Q Consensus 82 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~---------------s~~l~a~~~~~~~D~~ 140 (281)
++|++++..+.+ +..|++.+.++.++|..+...... .+ +.++++...|.+.|.+
T Consensus 164 i~Rl~s~~~ev~-----g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~n~nvraAyiHVlGDli 238 (379)
T KOG1482|consen 164 IQRLLSGDYEVN-----GGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEELNLNVRAAFVHVLGDLI 238 (379)
T ss_pred HhhhhcCceeec-----ceEEEEEeehhhhhhhhhhhhhcccCCCCCCCCCCCcCcccccccccchHHHHHHHHHHHHHH
Confidence 999999986433 344555666666777665544321 11 2789999999999999
Q ss_pred HHHHHHHHHHHHhhh---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEE
Q 023492 141 TNIIGLVAVLLANYI---DDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVR 217 (281)
Q Consensus 141 ~s~~~v~~~~~~~~~---~~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~ 217 (281)
.| +|++.+...++| |...||+++++.+..++.+..+++|+.+..||+..|..-...++++.+.+ .+||+.+|++|
T Consensus 239 QS-vGV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l~~-iegV~~VHdLh 316 (379)
T KOG1482|consen 239 QS-VGVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGLLS-IEGVKAVHDLH 316 (379)
T ss_pred HH-HHHHhhheeEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHhh-hcceeEEEEEE
Confidence 97 888888777776 57899999999999999999999999999999988877788999999987 89999999999
Q ss_pred EEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCCC
Q 023492 218 AYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHR 273 (281)
Q Consensus 218 ~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~~~ 273 (281)
+|..+-+ ....+|+..+++. +.+++.+++++.+++.+++.++|+|+||...+-
T Consensus 317 IWsiTv~k~~ls~Hv~i~~~a---d~~~vL~~~~~~i~~~~~~~~vTiQie~~~~~~ 370 (379)
T KOG1482|consen 317 IWSITVGKVALSVHLAIDSEA---DAEEVLDEARSLIKRRYGISHVTIQIEPYTEEM 370 (379)
T ss_pred EEEEecCceEEEEEEeecCCC---CHHHHHHHHHHHHHhhcceEEEEEEecCCccch
Confidence 9999865 7899999999664 567899999999998889999999999997653
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.1e-30 Score=214.40 Aligned_cols=260 Identities=16% Similarity=0.215 Sum_probs=219.3
Q ss_pred hhhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 023492 2 VLFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQ-TPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILE 80 (281)
Q Consensus 2 ~~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~-~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~e 80 (281)
+++...+++|+.+||.++.-||++|+.|+..+.+++...++.. +|.|.|||||++.+|++.-.+++.+++..+.+.++.
T Consensus 31 i~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ing~ll~ll~lyAlin 110 (314)
T COG3965 31 IFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAINGTLLALLCLYALIN 110 (314)
T ss_pred HHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhhccHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999998777 777889999999999999999999999999999999
Q ss_pred HHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHhHHhhhHHHHHHHHHHHHHHHHhhh-
Q 023492 81 SLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRA----FTNEIVKAYAQDHFFDVITNIIGLVAVLLANYI- 155 (281)
Q Consensus 81 si~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~~- 155 (281)
++..+++++++.+ +.+++..++++...|...++..+| .+|+.+.++...|++|...| .++.++++..+.
T Consensus 111 Al~~l~dGGR~v~-----~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS-~al~VaF~~a~~l 184 (314)
T COG3965 111 ALGSLLDGGREVE-----PGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLS-AALFVAFAAAWLL 184 (314)
T ss_pred HHHHHhcCCcccc-----ccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 9999999999654 366778888888888888777655 57899999999999999997 677777665542
Q ss_pred --------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCC--CcceeeeEEEEEecCeE
Q 023492 156 --------DDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHK--SIRHIDTVRAYTFGSHY 225 (281)
Q Consensus 156 --------~~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~--~v~~i~~~~~~~~g~~~ 225 (281)
.+|+||.+-.+++++++..+++.+|.++++++.-+|+ +..++++....+-++ +.-+ +..++-|.|+..
T Consensus 185 ~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~-el~q~ies~~~~~v~k~~f~~-~~~yvArVGr~l 262 (314)
T COG3965 185 AGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMTPN-ELQQSIESHAHEIVEKYGFPS-YHVYVARVGRGL 262 (314)
T ss_pred ccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhcCch-HHHHHHHhccce
Confidence 2799999999999999999999999999999987554 777777765543111 1111 234467889999
Q ss_pred EEEEEEEcCCCC---CHHHHHHHHHHHHHHHhcCCCceeEEEEeecc
Q 023492 226 FVEVDIVLPASM---PLQEAHDIGESLQEKLELLPEIERAFVHLDYE 269 (281)
Q Consensus 226 ~v~~~i~v~~~~---~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~ 269 (281)
++|+|..+|++. .+++.++|++++.+.|.+.+.-..+|+.+..+
T Consensus 263 ~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsfT~D 309 (314)
T COG3965 263 FIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSFTRD 309 (314)
T ss_pred EEEEEEEeCCccCCccchhHHHHHHHHHHHhhcCCcCceEEEEEecc
Confidence 999999998775 48899999999999998877666777766554
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.74 E-value=5.4e-17 Score=139.94 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=116.4
Q ss_pred hhhhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHH-HHHHH
Q 023492 3 LFAAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQ-IILES 81 (281)
Q Consensus 3 ~~i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~-~~~es 81 (281)
-+.+|+.+++.|||-+++|+++||+.|.+++.+..++.+.+.+.||..|||||.+.-++.+++.|+.++..|.. -++.+
T Consensus 219 ~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLISgvGIfc~G~GlSiyhG 298 (503)
T KOG2802|consen 219 NCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLISGVGIFCMGCGLSIYHG 298 (503)
T ss_pred HHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHhccceeeecccchhhhc
Confidence 35789999999999999999999999999999999999999999999999999999999999999976665554 67899
Q ss_pred HHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHH----HH---------------hCCHHHHHhHHhhhHHHHHH
Q 023492 82 LRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYC----RA---------------FTNEIVKAYAQDHFFDVITN 142 (281)
Q Consensus 82 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~---------------~~s~~l~a~~~~~~~D~~~s 142 (281)
++.+++|+|- ++..|.+.+...+++......... +| -++|..-+. ...|...-
T Consensus 299 v~gLlhpePi-----~~l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~DPs~nvV---l~EDtAAV 370 (503)
T KOG2802|consen 299 VMGLLHPEPI-----ESLLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRDPSTNVV---LLEDTAAV 370 (503)
T ss_pred cccccCCCCC-----cchHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHcCCCHHHHHhhcCCCcceEE---EecchHHH
Confidence 9999999983 455677666555544332211111 11 122222221 23344332
Q ss_pred HHHHHHHHH---H-hhh-ccchhHHHHHHHHHHHHHH
Q 023492 143 IIGLVAVLL---A-NYI-DDWMDPVGAIILALYTIRT 174 (281)
Q Consensus 143 ~~~v~~~~~---~-~~~-~~~~D~i~s~~i~~~i~~~ 174 (281)
.|++++.. . ..+ .|..|++++++++.++...
T Consensus 371 -tGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV 406 (503)
T KOG2802|consen 371 -TGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV 406 (503)
T ss_pred -HHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHH
Confidence 33333322 2 223 5999999999998765443
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.09 E-value=2e-05 Score=69.61 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=69.2
Q ss_pred hhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023492 5 AAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRT 84 (281)
Q Consensus 5 i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~esi~~ 84 (281)
-.+.-.|--+||++|.||+.|+.+|+++++..+.+.. +... |+..++++++++.+++++..++.+++|++..
T Consensus 135 ~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~-~~~~-------g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~ 206 (304)
T COG0053 135 RYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLL-GSLL-------GWPWLDPLAALLISLYILKTGFRLFKESVNE 206 (304)
T ss_pred HHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHH-HHHh-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567779999999999999999999999999987 4442 6888999999999999999999999999999
Q ss_pred hhcCCcc
Q 023492 85 LVSNEDQ 91 (281)
Q Consensus 85 l~~~~~~ 91 (281)
|++...+
T Consensus 207 L~d~~~~ 213 (304)
T COG0053 207 LMDAALD 213 (304)
T ss_pred HhCcCCC
Confidence 9995553
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=97.81 E-value=9.7e-05 Score=64.03 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=65.3
Q ss_pred HHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 023492 11 SVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNED 90 (281)
Q Consensus 11 ~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~esi~~l~~~~~ 90 (281)
|...+|.++.+|+.|++.|+++++..+.+...+. ||+..+|++++++.+++++..++.+++++...+++..+
T Consensus 118 ~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~ 189 (268)
T TIGR01297 118 GHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLLILYTAFRLLKESINVLLDAAP 189 (268)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3458899999999999999999999999887774 46778999999999999999999999999999999776
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=97.80 E-value=0.00015 Score=63.98 Aligned_cols=73 Identities=18% Similarity=0.089 Sum_probs=64.8
Q ss_pred HHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 023492 10 ASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNE 89 (281)
Q Consensus 10 ~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~esi~~l~~~~ 89 (281)
.+..++|.++.+|+.|+..|+++++..+.+...+. +|+..+|++++++.+++++..++.++++++..|++..
T Consensus 138 ~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~ 209 (299)
T PRK09509 138 VVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRA 209 (299)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34468999999999999999999998888877653 3777899999999999999999999999999999876
Q ss_pred c
Q 023492 90 D 90 (281)
Q Consensus 90 ~ 90 (281)
+
T Consensus 210 ~ 210 (299)
T PRK09509 210 L 210 (299)
T ss_pred C
Confidence 5
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.10 E-value=0.003 Score=56.15 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=60.8
Q ss_pred cchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 023492 14 SGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNED 90 (281)
Q Consensus 14 ~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~esi~~l~~~~~ 90 (281)
.+|.++.+|+.|...|+++++..+++...... .|+.-++++.+++.+++++..++.++++++..+++..+
T Consensus 148 ~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p 217 (312)
T PRK03557 148 EKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAP 217 (312)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 57899999999999999999988888765543 14445999999999999999999999999999998766
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=95.45 E-value=0.046 Score=49.53 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=66.0
Q ss_pred HHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023492 9 YASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSN 88 (281)
Q Consensus 9 ~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~esi~~l~~~ 88 (281)
..+..++|..++|-|+|-.+|+++..+++.+...+..-. .-+++++++++++.++..++.-..+++..|++.
T Consensus 249 ~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~~--------~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~ 320 (412)
T KOG1485|consen 249 YCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYYYN--------YWLDPIGAILVSTYIIYTGGRTGLENIKELVGR 320 (412)
T ss_pred HHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh--------hcccchhhhhhheehhhhhhHHHHHHHHHHhCC
Confidence 345668999999999999999999999999999887643 458999999999999999999999999999986
Q ss_pred Cc
Q 023492 89 ED 90 (281)
Q Consensus 89 ~~ 90 (281)
.-
T Consensus 321 ~a 322 (412)
T KOG1485|consen 321 SA 322 (412)
T ss_pred CC
Confidence 44
No 18
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=95.05 E-value=0.29 Score=35.36 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=56.3
Q ss_pred HHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCC--HHHHHHHHHHHHHHHhcCCCceeEEEEeeccC
Q 023492 197 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMP--LQEAHDIGESLQEKLELLPEIERAFVHLDYEY 270 (281)
Q Consensus 197 ~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~--~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~ 270 (281)
.+|++++.+ +|++..-..+.+.+.|..-.+.+.++..++.+ ..+..++++++++.+++.-++. +.|++-|.+
T Consensus 7 ~~Ie~vl~~-~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~-~~V~lv~~g 80 (96)
T PF14535_consen 7 SQIEEVLRE-FPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR-PEVELVPPG 80 (96)
T ss_dssp HHHHHHHCT-STTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-TT
T ss_pred HHHHHHHHh-CcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce-EEEEEECCC
Confidence 578888876 79988777888988888788889999988764 4678889999999998655764 677777764
No 19
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=94.17 E-value=0.74 Score=33.78 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=39.0
Q ss_pred eEEEEEe-cCeEEEEEEEEcCCCCCHHH-HHHHHHHHHHHHhcCC--CceeEEEEee
Q 023492 215 TVRAYTF-GSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP--EIERAFVHLD 267 (281)
Q Consensus 215 ~~~~~~~-g~~~~v~~~i~v~~~~~~~~-~~~i~~~i~~~l~~~~--~i~~v~i~ie 267 (281)
.+++... +....+++++.+..+.++.+ +.++++++++.+++.. .+.++.|+++
T Consensus 49 ~v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 49 GVKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred CeEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 3566655 66799999999988887554 7888888888887643 4556777665
No 20
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=93.23 E-value=2.3 Score=37.40 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=53.3
Q ss_pred hCCHHHHHhHHhhhHHHHHHHHHHHHHHHHhh-------h-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 023492 123 FTNEIVKAYAQDHFFDVITNIIGLVAVLLANY-------I-DDWMDPVGAIILALYTIRTWSMTVLENVNSLVGR 189 (281)
Q Consensus 123 ~~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~-------~-~~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~~ 189 (281)
.+|.++-+|+.|.++|++.-.++.++..+... | ++.+..+++++=+++++..+.-++.|++..+...
T Consensus 45 s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P 119 (296)
T COG1230 45 TGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAP 119 (296)
T ss_pred hccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 48999999999999999975444444433321 2 4678999999999999999999999999999853
No 21
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=92.27 E-value=5.3 Score=32.41 Aligned_cols=104 Identities=10% Similarity=0.148 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhHHhhhHHHHHHHHHHHH
Q 023492 70 MATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYCRAFT-NEIVKAYAQDHFFDVITNIIGLVA 148 (281)
Q Consensus 70 ll~~~~~~~~esi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-s~~l~a~~~~~~~D~~~s~~~v~~ 148 (281)
+++.|+..+.+++..++..... .. .....+..++++....+.+++|..|.+ +...+.-.+....-+..+...=++
T Consensus 102 Ll~lg~~aLlsgitaff~~nA~-~~---GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~ 177 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNAQ-VY---GLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIA 177 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc-ch---hHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHH
Confidence 4556666677777888876642 11 123345566677777778887765532 222333233333222222111111
Q ss_pred HHHHhhh-----ccchhHHHHHHHHHHHHHHHHH
Q 023492 149 VLLANYI-----DDWMDPVGAIILALYTIRTWSM 177 (281)
Q Consensus 149 ~~~~~~~-----~~~~D~i~s~~i~~~i~~~~~~ 177 (281)
.++...+ .+.+||+.-.+++..++..=+-
T Consensus 178 v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfy 211 (226)
T COG4858 178 VMIATVFLPTSLNPQLPPIALTIIGAVILALRFY 211 (226)
T ss_pred HHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHHH
Confidence 1111111 4789999999998887765553
No 22
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=91.79 E-value=0.081 Score=46.05 Aligned_cols=69 Identities=26% Similarity=0.317 Sum_probs=56.6
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 023492 16 SLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNED 90 (281)
Q Consensus 16 S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~esi~~l~~~~~ 90 (281)
|.++.+++.|++.|.+.++..+.+.......+.. + -+|++.+++.+++++..+..++.++...+++..+
T Consensus 134 s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~~~~--~----~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~ 202 (284)
T PF01545_consen 134 SPALRADALHSLIDVLSSLAVLISLLLAYLGPWF--W----YADPVASLLIALFILYSGYPLIKESIRILLDASP 202 (284)
T ss_dssp SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT-ST--S-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SH
T ss_pred cccchhhhhhcccchhHHHHHHHHHHHHHHHhcc--c----ccchhhhhHHHHHHhhhhhhchhhhhcccccccc
Confidence 9999999999999999998888887766654311 1 3899999999999999999999999999998765
No 23
>PRK14637 hypothetical protein; Provisional
Probab=90.42 E-value=3.1 Score=32.82 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCC
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYT 271 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~ 271 (281)
+-...+.++..+.+ -| .++.|+...+.|+...+.+.|.-+..+++++-.++.+.|...|.......+-++++-..+-
T Consensus 7 ~~~~~~~v~p~~~~--~g-~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGl 83 (151)
T PRK14637 7 DLGYFSECEPVVEG--LG-CKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGI 83 (151)
T ss_pred cccHHHHHHHHHHh--cC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCC
Confidence 33456677777765 45 4578999999998888888888888899999999999998888642223445777777776
Q ss_pred CCCcccccCC
Q 023492 272 HRPEHAQAHY 281 (281)
Q Consensus 272 ~~~~~~~~~~ 281 (281)
+.|=.++.||
T Consensus 84 dRpL~~~~~f 93 (151)
T PRK14637 84 ERVIKNAAEF 93 (151)
T ss_pred CCCCCCHHHH
Confidence 6666666554
No 24
>PRK14647 hypothetical protein; Provisional
Probab=89.64 E-value=5.3 Score=31.74 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCc-eeEEEEeeccCCCC
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEYTHR 273 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i-~~v~i~iep~~~~~ 273 (281)
+.+.++..+.+ .| ..+.++.+.+.|+...+.+.|.-+...++++-.++.+.|...|.....+ ..-++++-..+-+.
T Consensus 10 i~~~i~~~~~~--~G-~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~R 86 (159)
T PRK14647 10 VTELAEQVLSS--LG-LELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDR 86 (159)
T ss_pred HHHHHHHHHHH--CC-CEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCC
Confidence 33344444543 35 4577999998888888888888888899999999999999999632122 23467777766666
Q ss_pred CcccccCC
Q 023492 274 PEHAQAHY 281 (281)
Q Consensus 274 ~~~~~~~~ 281 (281)
|=.++.||
T Consensus 87 pL~~~~~f 94 (159)
T PRK14647 87 PLKKEADY 94 (159)
T ss_pred cCCCHHHH
Confidence 66666664
No 25
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.52 E-value=4.6 Score=31.86 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHh-cCCCceeEEEEeeccCCCC
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIERAFVHLDYEYTHR 273 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~-~~~~i~~v~i~iep~~~~~ 273 (281)
..+-++..+++ .| .++.++...+.|+...+.+.+.=+.++++++-.++.+++...|. +.|-...-++++...+-+.
T Consensus 10 v~~liep~~~~--lG-~ELv~ve~~~~~~~~~lrI~id~~g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGldR 86 (153)
T COG0779 10 VTELIEPVVES--LG-FELVDVEFVKEGRDSVLRIYIDKEGGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGLDR 86 (153)
T ss_pred HHHHHHHhHhh--cC-cEEEEEEEEEcCCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCCCC
Confidence 33444444433 44 55789999999999999999988899999999999999999996 3433335567777776666
Q ss_pred CcccccCC
Q 023492 274 PEHAQAHY 281 (281)
Q Consensus 274 ~~~~~~~~ 281 (281)
|=.+..||
T Consensus 87 pL~~~~~f 94 (153)
T COG0779 87 PLKTAEHF 94 (153)
T ss_pred CcCCHHHH
Confidence 65555554
No 26
>PRK14634 hypothetical protein; Provisional
Probab=88.93 E-value=5.5 Score=31.54 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCC--CCHHHHHHHHHHHHHHHhcCCCc-eeEEEEeeccC
Q 023492 194 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS--MPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEY 270 (281)
Q Consensus 194 ~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~--~~~~~~~~i~~~i~~~l~~~~~i-~~v~i~iep~~ 270 (281)
.+.+.++..+.+ .| .++.++.+.+.|+...+.+.|.-+.+ .++++-.++.+.+...|.....+ ..=++++...+
T Consensus 8 ~i~~l~~~~~~~--~G-~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 84 (155)
T PRK14634 8 DLETLASATAAD--KG-FELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLLTEAYVLEISSPG 84 (155)
T ss_pred HHHHHHHHHHHH--cC-CEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence 334444444443 45 44789999998888888999987777 99999999999999999632221 23467777776
Q ss_pred CCCCcccccCC
Q 023492 271 THRPEHAQAHY 281 (281)
Q Consensus 271 ~~~~~~~~~~~ 281 (281)
-+.|=.++.||
T Consensus 85 ldRpL~~~~~f 95 (155)
T PRK14634 85 IGDQLSSDRDF 95 (155)
T ss_pred CCCcCCCHHHH
Confidence 66666556554
No 27
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=88.88 E-value=6.3 Score=31.09 Aligned_cols=84 Identities=8% Similarity=0.079 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCC-ceeEEEEeeccCCCC
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPE-IERAFVHLDYEYTHR 273 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~-i~~v~i~iep~~~~~ 273 (281)
+.+.++..+.+ .| ..+.++.+.+.|+...+.+.|.-+.+.++++-.++.+.+...|..... -..-++++-..+-+.
T Consensus 9 i~~~~~~~~~~--~g-~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~R 85 (154)
T PRK00092 9 LTELIEPVVEA--LG-YELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDR 85 (154)
T ss_pred HHHHHHHHHHH--CC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCC
Confidence 34444555543 35 448899999988888888888887889999999999999999963221 124467777777676
Q ss_pred CcccccCC
Q 023492 274 PEHAQAHY 281 (281)
Q Consensus 274 ~~~~~~~~ 281 (281)
|=.++.||
T Consensus 86 pL~~~~~f 93 (154)
T PRK00092 86 PLKKARDF 93 (154)
T ss_pred cCCCHHHH
Confidence 66666664
No 28
>PRK14638 hypothetical protein; Provisional
Probab=88.73 E-value=6.6 Score=30.90 Aligned_cols=84 Identities=10% Similarity=0.070 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCC-CCHHHHHHHHHHHHHHHhcC-CCceeEEEEeeccCCC
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS-MPLQEAHDIGESLQEKLELL-PEIERAFVHLDYEYTH 272 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~-~~~~~~~~i~~~i~~~l~~~-~~i~~v~i~iep~~~~ 272 (281)
+.+.++..+.+ .| ..+.++...+.|+...+.+.|.-+.. +++++-.++.+.+...|... +--..=++++...+-+
T Consensus 10 i~~~~~~i~~~--~G-~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (150)
T PRK14638 10 VRKEAERIAEE--QG-LEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLD 86 (150)
T ss_pred HHHHHHHHHHH--cC-CEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccccccCCceEEEEeCCCCC
Confidence 34445555543 45 45779999988888888888887655 99999999999999999632 2112346777777766
Q ss_pred CCcccccCC
Q 023492 273 RPEHAQAHY 281 (281)
Q Consensus 273 ~~~~~~~~~ 281 (281)
.|=.++.||
T Consensus 87 RpL~~~~~f 95 (150)
T PRK14638 87 RPLRGPKDY 95 (150)
T ss_pred CCCCCHHHH
Confidence 666666664
No 29
>PRK14635 hypothetical protein; Provisional
Probab=88.35 E-value=5 Score=31.99 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=53.0
Q ss_pred ceeeeEEEEEecCeEEEEEEEEc----CCCCCHHHHHHHHHHHHHHHhc-CCCceeEEEEeeccCCCCCcccccCC
Q 023492 211 RHIDTVRAYTFGSHYFVEVDIVL----PASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEYTHRPEHAQAHY 281 (281)
Q Consensus 211 ~~i~~~~~~~~g~~~~v~~~i~v----~~~~~~~~~~~i~~~i~~~l~~-~~~i~~v~i~iep~~~~~~~~~~~~~ 281 (281)
.++.++.+.+.|+...+.+.|.- ++..++++-.++.+.+...|.. .+ ...-++++-..+-+.|=.++.||
T Consensus 20 ~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD~~d~-~~~Y~LEVSSPGldRpL~~~~~~ 94 (162)
T PRK14635 20 VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERISP-DLDFTLKVSSAGAERKLRLPEDL 94 (162)
T ss_pred CEEEEEEEEecCCCcEEEEEEecCCCCCCCcCHHHHHHHHHHHHHHhCCCCC-CCCeEEEEcCCCCCCcCCCHHHH
Confidence 45779999888888888888864 3458999999999999999964 33 35667777777766666666664
No 30
>PRK14640 hypothetical protein; Provisional
Probab=88.23 E-value=7.2 Score=30.74 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC-CCceeEEEEeeccCCCC
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL-PEIERAFVHLDYEYTHR 273 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~-~~i~~v~i~iep~~~~~ 273 (281)
+.+.++..+.+ .| .++.++...+.|+...+.+.|.-+...++++-.++.+.+...|... +--..=++++-..+-+.
T Consensus 8 i~~li~p~~~~--~G-~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~R 84 (152)
T PRK14640 8 LTDLLEAPVVA--LG-FELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDR 84 (152)
T ss_pred HHHHHHHHHHh--cC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 33444444443 35 4578999998888888888888777899999999999999999632 21123467777776666
Q ss_pred CcccccCC
Q 023492 274 PEHAQAHY 281 (281)
Q Consensus 274 ~~~~~~~~ 281 (281)
|=.++.||
T Consensus 85 pL~~~~~f 92 (152)
T PRK14640 85 PLFKVAQF 92 (152)
T ss_pred cCCCHHHH
Confidence 66666554
No 31
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=88.12 E-value=4.2 Score=32.70 Aligned_cols=70 Identities=11% Similarity=0.212 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc-CCCceeEEEEeecc
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYE 269 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~-~~~i~~v~i~iep~ 269 (281)
..+.-+++.+.+.+ ++| |.+..+.-.|...+|.+.+.-. . ....++.++|++.+++ .|++.+|.|.-+|.
T Consensus 73 ~~~~a~~i~~~v~~-~~~---V~~A~vvv~~~~a~Vav~~~~~-~---~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~ 143 (177)
T PF09580_consen 73 RQQLADRIANRVKK-VPG---VEDATVVVTDDNAYVAVDLDFN-R---FNTKKIKKKVEKAVKSADPRIYNVYVSTDPD 143 (177)
T ss_pred HHHHHHHHHHHHhc-CCC---ceEEEEEEECCEEEEEEEeccc-c---cchhHHHHHHHHHHHHhCCCccEEEEEcCHH
Confidence 34566777777765 666 5577888889999998888833 2 2357899999999986 78989999988875
No 32
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=87.71 E-value=5 Score=31.87 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc-CCCceeEEEEeeccC
Q 023492 194 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEY 270 (281)
Q Consensus 194 ~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~-~~~i~~v~i~iep~~ 270 (281)
+.-++|.+.+.+ +|+ +++..+.-.|...+|.+.+.-. ..-...+++.+++.+.+++ .|.+.+|.|.-+|+.
T Consensus 54 ~~A~~Ia~~v~~-v~~---V~dA~vvVtg~~A~Vgv~~~~~--~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd~ 125 (158)
T TIGR02898 54 DVADEIASEAAK-VKG---VKDATVVITGNYAYVGVDLTNG--LEGSVTDELKEKVAETVKSTDNRIANVYVSADPDT 125 (158)
T ss_pred HHHHHHHHHHhc-CCC---CceEEEEEECCEEEEEEEcCCC--cchhhHHHHHHHHHHHHHhhCCCcceEEEEcCHHH
Confidence 344555555544 555 6688888889988877765543 3334568899999999987 899999999988863
No 33
>PRK14630 hypothetical protein; Provisional
Probab=87.21 E-value=9.1 Score=29.83 Aligned_cols=84 Identities=8% Similarity=0.048 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC-CCceeEEEEeeccCC
Q 023492 193 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL-PEIERAFVHLDYEYT 271 (281)
Q Consensus 193 ~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~-~~i~~v~i~iep~~~ 271 (281)
++..+.++..+.+ -| .++.++...+.|+...+.+.|.-+..+++++-.++.+.+...+.+. ++ .=++++-..+-
T Consensus 8 ~~i~~li~~~~~~--~G-~eLvdve~~~~~~~~~lrV~Id~~~gV~idDC~~vSr~i~~~ld~~i~~--~Y~LEVSSPGl 82 (143)
T PRK14630 8 SEVYNLIKNVTDR--LG-IEIIEINTFRNRNEGKIQIVLYKKDSFGVDTLCDLHKMILLILEAVLKY--NFSLEISTPGI 82 (143)
T ss_pred HHHHHHHHHHHHH--cC-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccCCC--CeEEEEeCCCC
Confidence 3455556666654 45 4577999888787777888888888899999999999998888652 23 33566666666
Q ss_pred CCCcccccCC
Q 023492 272 HRPEHAQAHY 281 (281)
Q Consensus 272 ~~~~~~~~~~ 281 (281)
+.|=.++.||
T Consensus 83 dRpL~~~~df 92 (143)
T PRK14630 83 NRKIKSDREF 92 (143)
T ss_pred CCcCCCHHHH
Confidence 6665555554
No 34
>PRK05783 hypothetical protein; Provisional
Probab=86.18 E-value=9.6 Score=26.80 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=40.9
Q ss_pred HHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHH-hcCCCceeEEEEeec
Q 023492 197 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL-ELLPEIERAFVHLDY 268 (281)
Q Consensus 197 ~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l-~~~~~i~~v~i~iep 268 (281)
+.|++.+.+ -|...+.++|+ |. ++++.+.-+ +.+++.+..+++.+.| -..|-+.+.+|.+++
T Consensus 21 ~aI~~aL~~--lg~~~V~~VRv---GK--~iel~l~~~---~~e~a~~~v~~mc~~LrLaNpVIe~y~i~~~~ 83 (84)
T PRK05783 21 ETIQRYVIE--RYTGNIIEVRA---GK--YLVFKIEAN---SPEEAKELALKIAREGRLYNPIVHKIVVRVRR 83 (84)
T ss_pred HHHHHHHHH--cCCCCcceEEe---eE--EEEEEEcCC---CHHHHHHHHHHHHHhcCcCCceeEEEEEEEEe
Confidence 456777754 24445666665 43 344444333 5577888888998888 667899888887765
No 35
>PRK14633 hypothetical protein; Provisional
Probab=85.97 E-value=12 Score=29.39 Aligned_cols=84 Identities=5% Similarity=0.048 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc-CCCceeEEEEeeccCCC
Q 023492 194 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEYTH 272 (281)
Q Consensus 194 ~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~-~~~i~~v~i~iep~~~~ 272 (281)
++.+.++..+.+ .| .++.++.+.+.|. ..+.+.|.-+.++++++-.++.+.|...|.. .+--..=++++-..+-+
T Consensus 5 ~i~~lv~p~~~~--~G-~eL~dve~~~~~~-~~lrV~ID~~~Gv~lddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGld 80 (150)
T PRK14633 5 DLYEIVEPITAD--LG-YILWGIEVVGSGK-LTIRIFIDHENGVSVDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMN 80 (150)
T ss_pred HHHHHHHHHHHH--CC-CEEEEEEEEeCCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCC
Confidence 344555555544 45 4477888877666 5788888878889999999999999999963 22222446777776666
Q ss_pred CCcccccCC
Q 023492 273 RPEHAQAHY 281 (281)
Q Consensus 273 ~~~~~~~~~ 281 (281)
.|=.++.||
T Consensus 81 RpL~~~~~f 89 (150)
T PRK14633 81 RQIFNIIQA 89 (150)
T ss_pred CCCCCHHHH
Confidence 666555554
No 36
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=85.54 E-value=26 Score=31.29 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHhHHhhhHHHHHHHHHHHHHHHHhhh--------ccchhHHHHHHHHHHHHH
Q 023492 102 VVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYI--------DDWMDPVGAIILALYTIR 173 (281)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~~--------~~~~D~i~s~~i~~~i~~ 173 (281)
.+..........+...+|....+|..+.+++.|...|-....+++.+..+..+- ...+...+++.=+++...
T Consensus 37 if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl 116 (354)
T KOG1484|consen 37 IFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVL 116 (354)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHH
Confidence 334444555555566666777889999999999999998866666666555431 135677777777888999
Q ss_pred HHHHHHHHHHHHhhC
Q 023492 174 TWSMTVLENVNSLVG 188 (281)
Q Consensus 174 ~~~~~~~~~~~~Ll~ 188 (281)
.+.-+.+|++..|++
T Consensus 117 ~a~fi~~Es~eRl~~ 131 (354)
T KOG1484|consen 117 IAFFIFSESVERLFD 131 (354)
T ss_pred HHHHHhHHHHHHhcC
Confidence 999999999999986
No 37
>PRK14639 hypothetical protein; Provisional
Probab=85.36 E-value=8.8 Score=29.80 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=55.0
Q ss_pred CCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC-CCceeEEEEeeccCCCCCcccccCC
Q 023492 208 KSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL-PEIERAFVHLDYEYTHRPEHAQAHY 281 (281)
Q Consensus 208 ~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~-~~i~~v~i~iep~~~~~~~~~~~~~ 281 (281)
.| .++.|+...+.|....+.+.|.-+...++++-.++.+.|.+.|... +--..-++++...+-+.|=.++.||
T Consensus 10 ~G-~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~~~f 83 (140)
T PRK14639 10 CG-VSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSKIEHF 83 (140)
T ss_pred CC-CEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCCHHHH
Confidence 35 4577999888888888899998888899999999999999999632 2222447777777766666555554
No 38
>PRK14646 hypothetical protein; Provisional
Probab=84.59 E-value=12 Score=29.64 Aligned_cols=83 Identities=8% Similarity=0.025 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCC--CCCHHHHHHHHHHHHHHHhcCCCc-eeEEEEeeccCCC
Q 023492 196 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPA--SMPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEYTH 272 (281)
Q Consensus 196 ~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~--~~~~~~~~~i~~~i~~~l~~~~~i-~~v~i~iep~~~~ 272 (281)
.+.++..+.+ -| .++.++...+.|....+.+.|.-+. ++++++-.++.+.+...|.....+ ..=++++...+-+
T Consensus 10 ~~li~p~~~~--~G-~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGld 86 (155)
T PRK14646 10 EILLEKVANE--FD-LKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVS 86 (155)
T ss_pred HHHHHHHHHH--cC-CEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCC
Confidence 3334444433 34 5578999999988888888887753 489999999999999999532121 2346677766666
Q ss_pred CCcccccCC
Q 023492 273 RPEHAQAHY 281 (281)
Q Consensus 273 ~~~~~~~~~ 281 (281)
.|=.++.||
T Consensus 87 RpL~~~~df 95 (155)
T PRK14646 87 DELTSERDF 95 (155)
T ss_pred CcCCCHHHH
Confidence 665555554
No 39
>PRK14641 hypothetical protein; Provisional
Probab=83.03 E-value=16 Score=29.47 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=51.4
Q ss_pred ceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCc-----eeEEEEeeccCCCCCcccccCC
Q 023492 211 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI-----ERAFVHLDYEYTHRPEHAQAHY 281 (281)
Q Consensus 211 ~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i-----~~v~i~iep~~~~~~~~~~~~~ 281 (281)
..+.++.+.+.|+...+.+.|.-+.+.++++-.++.+.|...|.....+ ..=++++-..+-+.|=.++.||
T Consensus 24 ~eLvdve~~~~~~~~~lrV~ID~~~gv~lDdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGldRpL~~~~~f 99 (173)
T PRK14641 24 VYLVSMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGEPIILPRQY 99 (173)
T ss_pred eEEEEEEEEeCCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCCCCcCCCHHHH
Confidence 4577899888888888888888777899999999999999999632111 2345666666655555555554
No 40
>COG1302 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.38 E-value=20 Score=27.46 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEe-cCeEEEEEEEEcCCCCCHHH-HHHHHHHHHHHHhcCC--CceeEEEEeecc
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP--EIERAFVHLDYE 269 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~-g~~~~v~~~i~v~~~~~~~~-~~~i~~~i~~~l~~~~--~i~~v~i~iep~ 269 (281)
..+.+.+.+.. +++. +.+.+..- +....+++++.++-..++-+ ++++.+.++..+++.- .+..+.||+.--
T Consensus 40 ~~~~~~e~l~~--~n~~--kGV~Ve~~~~~~v~VDvyi~v~YGv~IpeVa~~Iq~~V~~~v~~mtgl~v~~VNV~V~gV 114 (131)
T COG1302 40 FKDGLTEKLGK--ENVT--KGVKVEVGEDQSVAVDVYIIVEYGVKIPEVAENIQERVKEEVENMTGLKVVEVNVHVVGV 114 (131)
T ss_pred hhhhHHHHhCc--cccC--CCeEEEecCCCcEEEEEEEEEecCCchHHHHHHHHHHHHHHHHHhhCCceEEEEEEEEEe
Confidence 55556665522 2322 35566663 44599999999998877544 7888888888887654 445677766544
No 41
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=80.81 E-value=17 Score=25.55 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=31.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhccchhHHH---HHHHHHHHHHHHHHHH
Q 023492 133 QDHFFDVITNIIGLVAVLLANYIDDWMDPVG---AIILALYTIRTWSMTV 179 (281)
Q Consensus 133 ~~~~~D~~~s~~~v~~~~~~~~~~~~~D~i~---s~~i~~~i~~~~~~~~ 179 (281)
.+-..|.+-++++.+.+.+.....+.+||+. -+..+...++-+++.+
T Consensus 32 v~Rd~D~~fs~vgLl~g~IL~~~gwRldp~ll~~Q~l~~~~~i~f~~e~i 81 (84)
T PF07444_consen 32 VSRDYDIFFSSVGLLYGLILWFQGWRLDPILLFGQMLLVGLLIFFGWETI 81 (84)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777788888877766678899994 4445555555555543
No 42
>PRK14645 hypothetical protein; Provisional
Probab=79.92 E-value=28 Score=27.51 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcC--CCCCHHHHHHHHHHHHHHHhcCCCc-eeEEEEeeccCC
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLP--ASMPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEYT 271 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~--~~~~~~~~~~i~~~i~~~l~~~~~i-~~v~i~iep~~~ 271 (281)
+.+.++..+.+ -| ..+.++.+.+.|+...+.+.|.-+ .++++++-.++.+.|...|.....+ ..=++++-..+-
T Consensus 11 i~~li~~~~~~--~G-~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl 87 (154)
T PRK14645 11 LQQLAEGALEP--LG-YEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVESPGP 87 (154)
T ss_pred HHHHHHHHHHH--cC-CEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccccCCCceEEEEeCCCC
Confidence 34444555543 35 457899998888887888888753 3499999999999999999632111 234677777666
Q ss_pred CCCcccccCC
Q 023492 272 HRPEHAQAHY 281 (281)
Q Consensus 272 ~~~~~~~~~~ 281 (281)
+.|=.++.||
T Consensus 88 dRpL~~~~df 97 (154)
T PRK14645 88 KRPLFTARHF 97 (154)
T ss_pred CCCCCCHHHH
Confidence 6665555554
No 43
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=79.77 E-value=37 Score=28.84 Aligned_cols=84 Identities=17% Similarity=0.123 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhHHhhhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 023492 101 WVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVL 180 (281)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~~~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~~~~~~D~i~s~~i~~~i~~~~~~~~~ 180 (281)
.+.+....+.+.+..-.+..|+.+.........|+++|.++ .|+.=+++...+...-.+.+.++-.++.+-.++|+.|
T Consensus 37 ~a~~~i~lA~i~DglDG~VAR~~~~~s~~G~~lDSLaD~Vs--FgVaPA~l~y~~~~~~~~~~~~~a~~~~~~~alRLAr 114 (234)
T COG1183 37 AALLLILLALILDGLDGRVARKLNAKSAFGAELDSLADLVS--FGVAPALLLYSSGLNTGPLGLLAALLYVLCGALRLAR 114 (234)
T ss_pred HHHHHHHHHHHHcccchHHHHhcCCcchHHHHHhHHHHHHH--hhHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 34455556677888888888888877777888999999996 6766555554442222777788888888899999988
Q ss_pred HHHHHh
Q 023492 181 ENVNSL 186 (281)
Q Consensus 181 ~~~~~L 186 (281)
=+.+.-
T Consensus 115 FN~~~~ 120 (234)
T COG1183 115 FNVKTN 120 (234)
T ss_pred ccCccc
Confidence 776543
No 44
>PRK14632 hypothetical protein; Provisional
Probab=79.43 E-value=27 Score=28.14 Aligned_cols=83 Identities=10% Similarity=0.059 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCc-eeEEEEeeccCCCC
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEYTHR 273 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i-~~v~i~iep~~~~~ 273 (281)
+.+.++..+.+ -| .++.++.+.. |+...+.+.|.=+.++++++-..+.+.|...|.....+ ..=++++-..+-+.
T Consensus 10 i~~li~pv~~~--~G-~eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 85 (172)
T PRK14632 10 IADMAGPFLAS--LG-LELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER 85 (172)
T ss_pred HHHHHHHHHHH--CC-CEEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 33444444443 35 4467888664 66678888888778899999999999999999632122 23356666666666
Q ss_pred CcccccCC
Q 023492 274 PEHAQAHY 281 (281)
Q Consensus 274 ~~~~~~~~ 281 (281)
|=.++.||
T Consensus 86 pL~~~~~f 93 (172)
T PRK14632 86 PFFRAEQM 93 (172)
T ss_pred cCCCHHHH
Confidence 65555554
No 45
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=79.23 E-value=14 Score=24.72 Aligned_cols=38 Identities=32% Similarity=0.484 Sum_probs=24.7
Q ss_pred EEEEEEEEcC-CCCCHHHHHHHHHHHHHHHhcCCCceeEEE
Q 023492 225 YFVEVDIVLP-ASMPLQEAHDIGESLQEKLELLPEIERAFV 264 (281)
Q Consensus 225 ~~v~~~i~v~-~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i 264 (281)
-.+.+.+.++ +.++ ....+++++++.++..+++.+|.|
T Consensus 34 ~~V~v~l~l~~~~~~--~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACP--AAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHT--THHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCch--HHHHHHHHHHHHHHhCCCCceEeC
Confidence 3344445554 3333 467899999999999999887764
No 46
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=78.26 E-value=4.2 Score=29.21 Aligned_cols=33 Identities=18% Similarity=0.086 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHH
Q 023492 34 FILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATL 73 (281)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~ 73 (281)
...+.+.....|| ||+|.|...+++.++++.+.
T Consensus 65 g~~li~~~~GmRP-------GYGr~E~~iG~iiA~l~~~l 97 (99)
T PF09877_consen 65 GAFLIGFPLGMRP-------GYGRIETVIGLIIALLIYLL 97 (99)
T ss_pred HHHHHhhhccCCC-------CCCeehhhhhHHHHHHHHHH
Confidence 3345556666676 99999999999998876553
No 47
>PRK14643 hypothetical protein; Provisional
Probab=77.94 E-value=33 Score=27.40 Aligned_cols=83 Identities=4% Similarity=-0.005 Sum_probs=55.3
Q ss_pred HHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEc----CCCCCHHHHHHHHHHHHHHHhc-CCCceeEEEEeeccC
Q 023492 196 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVL----PASMPLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEY 270 (281)
Q Consensus 196 ~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v----~~~~~~~~~~~i~~~i~~~l~~-~~~i~~v~i~iep~~ 270 (281)
.+.++..+.+ -| .++.++...+.|+...+.+.|.= ++++++++-.++.+.+...|.. .|--..=++++...+
T Consensus 12 ~~l~~p~~~~--~G-~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 88 (164)
T PRK14643 12 NELVNKELEV--LN-LKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKIDQFIKTSEKYLLEISSSG 88 (164)
T ss_pred HHHHHHHHHh--cC-CEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhCccCCCCCCeEEEecCCC
Confidence 3334444433 34 55789999998888888888852 3469999999999999999963 222223456666666
Q ss_pred CCCCcccccCC
Q 023492 271 THRPEHAQAHY 281 (281)
Q Consensus 271 ~~~~~~~~~~~ 281 (281)
-+.|=.++.||
T Consensus 89 leRpL~~~~df 99 (164)
T PRK14643 89 IEKQIRSQEEL 99 (164)
T ss_pred CCCCCCCHHHH
Confidence 66655555543
No 48
>PRK15031 5-carboxymethyl-2-hydroxymuconate delta-isomerase; Provisional
Probab=77.69 E-value=24 Score=26.90 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEE-------Eec--Ce--EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc-CCC
Q 023492 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAY-------TFG--SH--YFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPE 258 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~-------~~g--~~--~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~-~~~ 258 (281)
..+++.+++.+.+.+ .|+....++|+| ..| .. -++.+.+.+-++-+.++-.++.+.+-+.+++ .+.
T Consensus 17 d~~~Ll~~l~~~l~~--sglF~~~~IK~Ra~~~~~y~vgdg~~~~~Fihv~l~i~~GRs~e~k~~l~~~l~~~l~~~~~~ 94 (126)
T PRK15031 17 DLPGLFAKVNQALAA--TGIFPLGGIRSRAHWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEVGEMLFALIKAHFAA 94 (126)
T ss_pred CHHHHHHHHHHHHHh--CCCCCccccEeeeeecCcEEEcCCCCCCcEEEEEeeecCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 355788999998876 566666666664 343 22 5777888887777888878888888888864 455
Q ss_pred c-----eeEEEEeeccCCC
Q 023492 259 I-----ERAFVHLDYEYTH 272 (281)
Q Consensus 259 i-----~~v~i~iep~~~~ 272 (281)
+ ..+++++..-.++
T Consensus 95 ~~~~~~~~LS~Ei~d~d~~ 113 (126)
T PRK15031 95 LMESRYLALSFEIEELHPT 113 (126)
T ss_pred hhcccceEEEEEEEEcCCc
Confidence 5 5677777666544
No 49
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=77.31 E-value=24 Score=28.51 Aligned_cols=76 Identities=13% Similarity=0.161 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhc-CCCc-------ceeeeEEEEEe--c-CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCcee
Q 023492 193 PEYLQKLTYLCWNH-HKSI-------RHIDTVRAYTF--G-SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIER 261 (281)
Q Consensus 193 ~~~~~~i~~~i~~~-~~~v-------~~i~~~~~~~~--g-~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~ 261 (281)
+...++|.+.+++. .|+. .-++++.+... | +...+.+.+..+. +. ....+++.+++.++..+++.+
T Consensus 72 ~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~-c~--~~~~L~~dV~~aL~~l~gV~~ 148 (174)
T TIGR03406 72 EDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPG-CG--MGPVLVEDVEDKVLAVPNVDE 148 (174)
T ss_pred cccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCC-Cc--HHHHHHHHHHHHHHhCCCcee
Confidence 44567788888662 2331 12344555431 1 1344444443332 33 357889999999998889998
Q ss_pred EEEEeeccCC
Q 023492 262 AFVHLDYEYT 271 (281)
Q Consensus 262 v~i~iep~~~ 271 (281)
+.+++..+.+
T Consensus 149 V~V~l~~dp~ 158 (174)
T TIGR03406 149 VEVELVFDPP 158 (174)
T ss_pred EEEEEEecCC
Confidence 8888777654
No 50
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=77.15 E-value=12 Score=28.88 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=45.2
Q ss_pred ceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC-CCceeEEEEeeccCCCCCcccccC
Q 023492 211 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL-PEIERAFVHLDYEYTHRPEHAQAH 280 (281)
Q Consensus 211 ~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~-~~i~~v~i~iep~~~~~~~~~~~~ 280 (281)
..+.++...+.|....+.+.|.-+.+.++++-.++.+.|...|... +--.+-++++-..+-+.+=.++.|
T Consensus 11 ~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~~~~~ 81 (141)
T PF02576_consen 11 LELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLKSPRD 81 (141)
T ss_dssp SEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--SSHHH
T ss_pred CEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCCCHHH
Confidence 5578999999999988888887788899999999999999999642 112355677776665555444443
No 51
>PRK14631 hypothetical protein; Provisional
Probab=76.21 E-value=39 Score=27.25 Aligned_cols=82 Identities=7% Similarity=0.025 Sum_probs=54.9
Q ss_pred HHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcC------------------CCCCHHHHHHHHHHHHHHHhc-CC
Q 023492 197 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLP------------------ASMPLQEAHDIGESLQEKLEL-LP 257 (281)
Q Consensus 197 ~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~------------------~~~~~~~~~~i~~~i~~~l~~-~~ 257 (281)
+.+...+.+ -| .++.++.+.+.|+...+.+.|.-+ ...++++-.++.+.|...|.. .+
T Consensus 12 ~li~p~~~~--~G-~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~~d~ 88 (174)
T PRK14631 12 DIIAPAVAA--CG-VDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVHDP 88 (174)
T ss_pred HHHHHHHHH--cC-CEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhccccc
Confidence 334444433 35 457799988888777778887653 458999999999999999953 22
Q ss_pred CceeEEEEeeccCCCCCcccccCC
Q 023492 258 EIERAFVHLDYEYTHRPEHAQAHY 281 (281)
Q Consensus 258 ~i~~v~i~iep~~~~~~~~~~~~~ 281 (281)
--..=++++...+-+.|=.+..||
T Consensus 89 i~~~Y~LEVSSPGldRpL~~~~df 112 (174)
T PRK14631 89 ISGEYALEVSSPGWDRPFFQLEQL 112 (174)
T ss_pred CCCCeEEEEeCCCCCCcCCCHHHH
Confidence 112346777777666666555554
No 52
>PRK14636 hypothetical protein; Provisional
Probab=75.06 E-value=43 Score=27.10 Aligned_cols=85 Identities=9% Similarity=0.090 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCC--CCCHHHHHHHHHHHHHHHhcCCCc-eeEEEEeeccC
Q 023492 194 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPA--SMPLQEAHDIGESLQEKLELLPEI-ERAFVHLDYEY 270 (281)
Q Consensus 194 ~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~--~~~~~~~~~i~~~i~~~l~~~~~i-~~v~i~iep~~ 270 (281)
++.+.++..+.+ -| .++.++.+.+.|+...+.+.|.-++ .+++++-.++.+.|...|.....+ ..=++++-..+
T Consensus 6 ~i~~lvep~~~~--~G-leLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPG 82 (176)
T PRK14636 6 ALTALIEPEAKA--LG-LDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDELDPIEDAYRLEVSSPG 82 (176)
T ss_pred HHHHHHHHHHHH--cC-CEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCC
Confidence 344555555544 45 4477888888888888888887553 489999999999999999632222 23356666666
Q ss_pred CCCCcccccCC
Q 023492 271 THRPEHAQAHY 281 (281)
Q Consensus 271 ~~~~~~~~~~~ 281 (281)
-+.|=.++.||
T Consensus 83 ldRpL~~~~df 93 (176)
T PRK14636 83 IDRPLTRPKDF 93 (176)
T ss_pred CCCCCCCHHHH
Confidence 66665555554
No 53
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=74.45 E-value=26 Score=24.33 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=40.7
Q ss_pred HHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEee
Q 023492 196 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 267 (281)
Q Consensus 196 ~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~ie 267 (281)
=+.|++.+.+ -|..++.++|+ |.. +++.+.-+ +.+++.+..+++.+.+-..|-+.+-++.++
T Consensus 18 G~ai~~al~~--lG~~~v~~Vr~---GK~--~~l~~~~~---~~e~a~~~v~~i~~~LLaNpvie~y~i~~~ 79 (80)
T PF02700_consen 18 GEAIKRALHR--LGYDGVKDVRV---GKY--IELELEAD---DEEEAEEQVEEICEKLLANPVIEDYEIEVE 79 (80)
T ss_dssp HHHHHHHHHH--TT-TTEEEEEE---EEE--EEEEEE-S---SHHHHHHHHHHHHHHTTS-TTTEEEEEEEE
T ss_pred HHHHHHHHHH--cCCcccCcEEE---EEE--EEEEEeCC---CHHHHHHHHHHHHHHhcCCCceEEEEEEEE
Confidence 3556666754 36666777766 433 34444444 667888888999888876688888888775
No 54
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.96 E-value=24 Score=23.73 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
.|...+++.+.+.+ .+ .++.+++....+..+...+.+.+|++.+.+ ++.+.+++..++. + +.++++|
T Consensus 9 rpGiv~~vt~~la~--~~-~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~---~l~~~l~~l~~~l-~---l~i~~~~ 75 (75)
T cd04870 9 RPGLTSALTEVLAA--HG-VRILDVGQAVIHGRLSLGILVQIPDSADSE---ALLKDLLFKAHEL-G---LQVRFEP 75 (75)
T ss_pred CCCHHHHHHHHHHH--CC-CCEEecccEEEcCeeEEEEEEEcCCCCCHH---HHHHHHHHHHHHc-C---ceEEEeC
Confidence 45788999999976 34 457788777777777778888888776544 4555555544442 4 3445444
No 55
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.08 E-value=26 Score=23.39 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCC
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPAS 236 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~ 236 (281)
-|....++...+.+ -| .++++.++...+....++.....+++
T Consensus 11 r~gLl~~i~~~l~~--~~-l~I~~A~i~T~~~~~v~D~F~v~~~~ 52 (73)
T cd04900 11 RPGLFARIAGALDQ--LG-LNILDARIFTTRDGYALDTFVVLDPD 52 (73)
T ss_pred CCCHHHHHHHHHHH--CC-CCeEEeEEEEeCCCeEEEEEEEECCC
Confidence 35678889998875 44 66889999888766666666555544
No 56
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=69.83 E-value=36 Score=25.24 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=38.0
Q ss_pred HHHhhCCCCCH-----HHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEc
Q 023492 183 VNSLVGRSAAP-----EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVL 233 (281)
Q Consensus 183 ~~~Ll~~~~~~-----~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v 233 (281)
+..|++...|+ +....|++++.. .|.+.++.++.+.+.|..+.+.+.+..
T Consensus 53 le~lig~~~~~~~~~sEi~r~I~EaL~~-d~rI~~V~~f~f~~~~~~l~v~f~V~t 107 (112)
T PF10934_consen 53 LEDLIGKNYPREYVESEIEREIEEALLQ-DPRITSVENFSFEWEGDSLYVSFTVTT 107 (112)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhc-CCCcceEEEEEEEEECCEEEEEEEEEE
Confidence 45566653332 456778888876 799999999999999999998888864
No 57
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=66.08 E-value=46 Score=23.77 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=31.1
Q ss_pred CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCC
Q 023492 223 SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYT 271 (281)
Q Consensus 223 ~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~ 271 (281)
....+.+.+..+.. + ...++.+.+++.+.+.+++.++.+.++....
T Consensus 37 ~~v~i~l~l~~p~~-~--~~~~l~~~i~~al~~l~gv~~v~v~i~~~~~ 82 (99)
T TIGR02945 37 GHVDIQMTLTAPNC-P--VAGSMPGEVENAVRAVPGVGSVTVELVWDPP 82 (99)
T ss_pred CeEEEEEEECCCCC-C--hHHHHHHHHHHHHHhCCCCceEEEEEEeeCC
Confidence 34455555544432 3 3467889999999888898888888876544
No 58
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=66.04 E-value=38 Score=22.89 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhcCCCcceeeeEEEEEe--cCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeE
Q 023492 193 PEYLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERA 262 (281)
Q Consensus 193 ~~~~~~i~~~i~~~~~~v~~i~~~~~~~~--g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v 262 (281)
+..+.+|.+.+.+ .+ .++.++++... +....+.+.++++ +.++.++ +-+.|++.|+|.+|
T Consensus 17 ~GlL~dI~~~i~~--~~-~nI~~i~~~~~~~~~~~~~~l~v~V~---d~~~L~~----ii~~L~~i~~V~~V 78 (80)
T PF13291_consen 17 PGLLADITSVISE--NG-VNIRSINARTNKDDGTARITLTVEVK---DLEHLNQ----IIRKLRQIPGVISV 78 (80)
T ss_dssp TTHHHHHHHHHHC--SS-SEEEEEEEEE--ETTEEEEEEEEEES---SHHHHHH----HHHHHCTSTTEEEE
T ss_pred CCHHHHHHHHHHH--CC-CCeEEEEeEEeccCCEEEEEEEEEEC---CHHHHHH----HHHHHHCCCCeeEE
Confidence 4678999999976 34 55778888775 4568899999987 4444444 45667777888765
No 59
>COG4035 Predicted membrane protein [Function unknown]
Probab=65.96 E-value=11 Score=26.66 Aligned_cols=41 Identities=15% Similarity=-0.009 Sum_probs=26.9
Q ss_pred HHHHHHHHHH-HHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHH
Q 023492 25 DSLLDLLSGF-ILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMAT 72 (281)
Q Consensus 25 ~~~~d~~~~~-~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~ 72 (281)
.+..|.+=.. ..++++....|| ||+|.|.+.+-+.++.+..
T Consensus 62 ~~v~~~~~~ag~flig~v~gMRP-------GYGR~Etv~Gt~LA~l~wL 103 (108)
T COG4035 62 RSVPVPLYMAGCFLIGFVLGMRP-------GYGRVETVVGTFLAVLLWL 103 (108)
T ss_pred cCCchHHHHHHHHHHHHhhccCC-------CCceeehhHHHHHHHHHHH
Confidence 3444444333 455666677777 9999999999666665544
No 60
>PRK00907 hypothetical protein; Provisional
Probab=65.56 E-value=33 Score=24.55 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEe--cCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCce
Q 023492 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 260 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~--g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~ 260 (281)
..++..+.|.++++++.|+.. -..+..+.. |+...+++.|.+. +.++. +.+-+.|.+.|.|.
T Consensus 26 a~~~l~~~V~~vv~~h~p~~~-~~~i~~r~Ss~GkY~Svtv~i~at---s~eQl----d~iY~~L~~~~~Vk 89 (92)
T PRK00907 26 AERGLETELPRLLAATGVELL-QERISWKHSSSGKYVSVRIGFRAE---SREQY----DAAHQALRDHPEVK 89 (92)
T ss_pred CchhHHHHHHHHHHHhCCCCC-cCcEEeccCCCCEEEEEEEEEEEC---CHHHH----HHHHHHHhhCCCEE
Confidence 467889999999988666643 335544544 5556677777766 44444 44566676666653
No 61
>cd02411 archeal_30S_S3_KH K homology RNA-binding domain (KH) of the archaeal 30S small ribosomal subunit S3 protein. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=64.33 E-value=26 Score=24.48 Aligned_cols=71 Identities=8% Similarity=-0.038 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023492 196 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 196 ~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
...+++.+.+.+.. ..+.++.+.+......+.+|..-|+-. +..--+-.+++++.|++..+..++.+++.+
T Consensus 12 ~~~Ir~fl~~~~~~-agIs~IeI~r~~~~i~V~I~t~~pg~i-IGk~G~~I~~l~~~l~k~~~~~~v~I~v~e 82 (85)
T cd02411 12 RTMIDEYLEKELER-AGYGGMEILRTPLGTQITIYAERPGMV-IGRGGKNIRELTEILETKFGLENPQIDVQE 82 (85)
T ss_pred HHHHHHHHHhhhhh-CcccEEEEEEcCCcEEEEEEECCCCce-ECCCchhHHHHHHHHHHHhCCCCceEEEEE
Confidence 44555555442222 357788887766668888888544432 222222224444444433333345555543
No 62
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=64.03 E-value=47 Score=23.25 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=39.9
Q ss_pred HHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023492 197 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 197 ~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
+.|++.+.. -|..++.++|+ |. ++++.+.-+ +-+.+++..+++.+.|-..|-|++-.+.++.
T Consensus 20 ~ti~~aL~~--lg~~~V~~vR~---gK--~~el~ld~~---~~e~a~~~v~~mcekLLaNpVIe~y~v~~~~ 81 (83)
T COG1828 20 ETIEKALHR--LGYNEVSDVRV---GK--VIELELDAE---SEEKAEEEVKEMCEKLLANPVIEDYEVEVEE 81 (83)
T ss_pred HHHHHHHHH--cCCcccceeee---ee--EEEEEecCc---chhHHHHHHHHHHHHHhCCCceeEEEEEEEe
Confidence 456666654 45566667766 33 333333332 3456778888888888777899888887764
No 63
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=63.01 E-value=33 Score=22.43 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeE
Q 023492 193 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERA 262 (281)
Q Consensus 193 ~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v 262 (281)
|+.+++|...... .| .++..+.+...+..-...+.+.++.+- +..+.+.+.|+|.+.+.+|
T Consensus 3 ~GvL~Ri~~vf~r--Rg-~nI~sl~v~~~~~~~~~riti~v~~~~------~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 3 PGVLNRITGVFRR--RG-FNIESLSVGPTEDPGISRITIVVSGDD------REIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp TTHHHHHHHHHHT--TT--EECEEEEEE-SSTTEEEEEEEEES-C------CHHHHHHHHHHCSTTEEEE
T ss_pred cHHHHHHHHHHhc--CC-eEEeeEEeeecCCCCEEEEEEEEeeCc------hhHHHHHHHHhccCCeEeC
Confidence 4567888888864 66 568888888754444445555555421 1334466777777776543
No 64
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=62.36 E-value=71 Score=26.17 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhcCCCcceeeeEEEEEec-----C-eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEe
Q 023492 193 PEYLQKLTYLCWNHHKSIRHIDTVRAYTFG-----S-HYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 266 (281)
Q Consensus 193 ~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g-----~-~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~i 266 (281)
|....++.+.+.+ .+ .++.+++....+ . -+...+.+.+|+++.+++ +++++++...+. + +.+.+
T Consensus 106 PGIV~~vT~~la~--~~-iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~---L~~~l~~l~~eL-~---vd~~l 175 (190)
T PRK11589 106 PHLIERFTALFDS--HH-MNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAAN---IEQAFKALCTEL-N---AQGSI 175 (190)
T ss_pred CCHHHHHHHHHHH--cC-CChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHH---HHHHHHHHHHHh-C---ceEEE
Confidence 5689999999976 44 457788777654 2 377999999999987654 444454433332 3 45555
Q ss_pred eccCCC
Q 023492 267 DYEYTH 272 (281)
Q Consensus 267 ep~~~~ 272 (281)
||....
T Consensus 176 ~~~~~~ 181 (190)
T PRK11589 176 NVVNYS 181 (190)
T ss_pred EEeecc
Confidence 665443
No 65
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=61.54 E-value=85 Score=27.80 Aligned_cols=71 Identities=11% Similarity=0.184 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCcceeeeE-------EEEE-ecC---------e-EEEEEEEEcCCCCCHHHHHHHHHHH
Q 023492 188 GRSAAPEYLQKLTYLCWNHHKSIRHIDTV-------RAYT-FGS---------H-YFVEVDIVLPASMPLQEAHDIGESL 249 (281)
Q Consensus 188 ~~~~~~~~~~~i~~~i~~~~~~v~~i~~~-------~~~~-~g~---------~-~~v~~~i~v~~~~~~~~~~~i~~~i 249 (281)
+...+++..+++++.+++ .|+|.+++-+ +.++ .|. + +--.+.+.++++.+ ..+..+++
T Consensus 73 ~~~~~~~~~~~l~~~l~~-~~~V~~v~~iskeeAl~~l~~~~g~~~~l~~l~~nPLP~si~V~l~~~~~---~~~~~~~l 148 (309)
T TIGR00439 73 EKALAQSDADTVVSLLTR-DKGVENINYISREDGLAEFQSWSGFGNLLSMLDGNPLPAVFIVTPDPAFT---PAEMQAIL 148 (309)
T ss_pred CCCCCHHHHHHHHHHHhC-CCCccEEEEECHHHHHHHHHHhcCCchhhhhcccCCCCCeEEEEeCCCCC---hHHHHHHH
Confidence 444567778889998986 8998877533 1111 121 1 12223444443322 23466777
Q ss_pred HHHHhcCCCceeE
Q 023492 250 QEKLELLPEIERA 262 (281)
Q Consensus 250 ~~~l~~~~~i~~v 262 (281)
++.+++.|++.++
T Consensus 149 ~~~l~~~~gV~~v 161 (309)
T TIGR00439 149 RDNITKIPGVEEV 161 (309)
T ss_pred HHHHhcCCCCCcc
Confidence 7888888888766
No 66
>PRK11023 outer membrane lipoprotein; Provisional
Probab=60.59 E-value=23 Score=28.94 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=42.0
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCCcceee-eEEEEEecCeEEEEEEEEcCCCC-CHHHHHHHHHHHHHHHhcCCCceeEE
Q 023492 186 LVGRSAAPEYLQKLTYLCWNHHKSIRHID-TVRAYTFGSHYFVEVDIVLPASM-PLQEAHDIGESLQEKLELLPEIERAF 263 (281)
Q Consensus 186 Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~-~~~~~~~g~~~~v~~~i~v~~~~-~~~~~~~i~~~i~~~l~~~~~i~~v~ 263 (281)
|.|..++++..++..+..++ ++||++++ ++++.. +.+. +..+-..+..+++..|...+.+....
T Consensus 81 L~G~V~~~~~k~~A~~ia~~-v~GV~~V~N~l~V~~-------------~~~~~~~~~D~~It~kik~~L~~~~~v~~~~ 146 (191)
T PRK11023 81 LTGQSPNAELSERAKQIAMG-VEGVNEVYNEIRQGQ-------------PIGLGTASKDTWITTKVRSQLLTSDSVKSSN 146 (191)
T ss_pred EEEEeCCHHHHHHHHHHHhc-CCCceeecceeeecc-------------ccccccccCcHHHHHHHHHHHhcCCCCCcce
Confidence 44656677788888888886 89999887 344321 1111 11122458888998886545555444
Q ss_pred EEeec
Q 023492 264 VHLDY 268 (281)
Q Consensus 264 i~iep 268 (281)
|+++-
T Consensus 147 I~V~t 151 (191)
T PRK11023 147 VKVTT 151 (191)
T ss_pred EEEEE
Confidence 55443
No 67
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=59.42 E-value=15 Score=29.04 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=33.8
Q ss_pred CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCC
Q 023492 223 SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYT 271 (281)
Q Consensus 223 ~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~ 271 (281)
++.+.++.+.+|+.+..-| .++++.|++.+++ |-.+++|++++...
T Consensus 27 N~R~Ldi~~rlP~~l~~lE-~~ir~~i~~~l~R--GkV~v~i~~~~~~~ 72 (159)
T PF03755_consen 27 NHRFLDISIRLPRELSSLE-PEIRKLIRKKLSR--GKVEVSIRVERSSE 72 (159)
T ss_pred ccCceeeEEeCCHHHHHHH-HHHHHHHHHhccc--ceEEEEEEEEECcc
Confidence 3467888999998775444 6777778777765 55678888888863
No 68
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=57.35 E-value=40 Score=21.08 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=33.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCCcc
Q 023492 229 VDIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRPEH 276 (281)
Q Consensus 229 ~~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~~~ 276 (281)
++|.+.++.+.++-.++.+.+.+.+.+. ....++++.++....++...
T Consensus 3 i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~~~~~ 52 (58)
T cd00491 3 VQIYILEGRTDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPKENWGI 52 (58)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCchhceE
Confidence 3455555557888899999998888642 23457888888776665543
No 69
>PRK02001 hypothetical protein; Validated
Probab=56.54 E-value=86 Score=24.70 Aligned_cols=66 Identities=9% Similarity=0.077 Sum_probs=45.8
Q ss_pred ceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCCCCcccccCC
Q 023492 211 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRPEHAQAHY 281 (281)
Q Consensus 211 ~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~~~~~~~~~~~ 281 (281)
..+.|+.+.+. ..+.+.|.-+...++++-.++.+.+...|...++ +=++++-..+-+.|=.++.||
T Consensus 20 ~eLvdv~~~~~---~~lrV~ID~~~Gv~lddC~~vSr~is~~LD~~d~--~Y~LEVSSPGldRpL~~~~~f 85 (152)
T PRK02001 20 LFLVDLTISPD---NKIVVEIDGDEGVWIEDCVELSRAIEHNLDREEE--DFELEVGSAGLTSPLKVPRQY 85 (152)
T ss_pred cEEEEEEEEcC---CEEEEEEECCCCCCHHHHHHHHHHHHHHhcCCCC--CeEEEEeCCCCCCcCCCHHHH
Confidence 34667776532 2255666656779999999999999999964333 446777777777776667665
No 70
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=55.39 E-value=1.4e+02 Score=26.05 Aligned_cols=78 Identities=15% Similarity=0.048 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhcCCCccee--eeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC---CCceeEEEEee
Q 023492 194 EYLQKLTYLCWNHHKSIRHI--DTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELL---PEIERAFVHLD 267 (281)
Q Consensus 194 ~~~~~i~~~i~~~~~~v~~i--~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~---~~i~~v~i~ie 267 (281)
+..+.+++.+++ .|++..- ..+.+...|.. ...++...++..--.+--.++.+++++.+++. .+.-+-+++++
T Consensus 200 ~~~~il~~~~~~-~~~vl~~p~p~v~~~~~~dssi~~~v~~wv~~~~~~~~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~ 278 (286)
T PRK10334 200 QVKQILTNIIQS-EDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFK 278 (286)
T ss_pred HHHHHHHHHHHh-CCceecCCCCEEEEEeeeCceEEEEEEEEEecchhHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEec
Confidence 445556666665 6887532 25777777765 55565555543311222356777788877531 12224566666
Q ss_pred ccCCC
Q 023492 268 YEYTH 272 (281)
Q Consensus 268 p~~~~ 272 (281)
+....
T Consensus 279 ~~~~~ 283 (286)
T PRK10334 279 RVKED 283 (286)
T ss_pred cCCcc
Confidence 55433
No 71
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.36 E-value=25 Score=25.88 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCC
Q 023492 238 PLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTH 272 (281)
Q Consensus 238 ~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~~ 272 (281)
+...+..+.+.|++.++.+|-+.++.++++++...
T Consensus 35 s~~~a~~le~aI~esi~~QP~v~daeV~Id~~~~K 69 (116)
T COG2098 35 SPGTAESLEKAIEESIKVQPFVEDAEVKIDRDKEK 69 (116)
T ss_pred CccchHHHHHHHHHHHhcCCceeeEEEEecccccc
Confidence 44557788889999999999999999999998543
No 72
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=55.26 E-value=40 Score=32.23 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHh-c--CCCceeEEE
Q 023492 196 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE-L--LPEIERAFV 264 (281)
Q Consensus 196 ~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~-~--~~~i~~v~i 264 (281)
++++.++... ++||. .....+.|+.+.|-+. |...+-.++..++.+|.+.++ + +||-..|||
T Consensus 439 l~~le~i~~~-~~gv~---~~~aiqaGreirv~v~---~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtv 503 (514)
T TIGR03319 439 LEKLEEIANS-FEGVE---KSYAIQAGREIRVMVK---PEKISDDQAVVLARDIAKKIEEELEYPGQIKVTV 503 (514)
T ss_pred HHHHHHHHHh-CCCch---hhhhhhcCcEEEEEec---CCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEE
Confidence 3456666655 67755 5556678998765433 445788889999999999996 3 677544544
No 73
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=54.35 E-value=33 Score=23.86 Aligned_cols=55 Identities=5% Similarity=0.017 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCC---CHHHHHHHHHHHHHHH
Q 023492 198 KLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASM---PLQEAHDIGESLQEKL 253 (281)
Q Consensus 198 ~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~---~~~~~~~i~~~i~~~l 253 (281)
.|++.+.+.+.. ..+.++.+.+......+.+|..-|+-+ .-++.+++++.+++.+
T Consensus 6 ~Ire~l~k~~~~-agis~IeI~Rt~~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~ 63 (81)
T cd02413 6 ELNEFLTRELAE-DGYSGVEVRVTPTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRF 63 (81)
T ss_pred HHHHHHHHHHHh-CCeeeEEEEEcCCeEEEEEEeCCCceEECCCchhHHHHHHHHHHHh
Confidence 445555442222 457888888877778888888777654 2345666766666666
No 74
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=53.11 E-value=38 Score=35.32 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=38.7
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023492 225 YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
-.+.++++.|++.++++.+++.+++++.+++.|++.+++..+-.
T Consensus 559 ~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~~p~V~~v~s~vG~ 602 (1021)
T PF00873_consen 559 GEFYVSVELPPGTSLEETDAIVKQVEDILKEDPEVKSVSSRVGR 602 (1021)
T ss_dssp SEEEEEEEESTTC-HHHHHHHHHHHHHHHHTTTTEEEEEEEESE
T ss_pred CceEEEEeeccCchHHHHHHHHHHHHHHHHhhhhhhccceEecc
Confidence 56899999999999999999999999999988999988877654
No 75
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=52.83 E-value=91 Score=22.96 Aligned_cols=84 Identities=12% Similarity=0.055 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhcCCCc------ceee-eEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCc--eeE
Q 023492 193 PEYLQKLTYLCWNHHKSI------RHID-TVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI--ERA 262 (281)
Q Consensus 193 ~~~~~~i~~~i~~~~~~v------~~i~-~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i--~~v 262 (281)
....+++.+.+.+ ..|+ ..++ +.+.+--|+. -.+.++|..-+..+.++-.++.++|.+.+++..++ .++
T Consensus 18 ~~~~~~~~~~l~~-~lgkPe~~~~v~~~~~~~m~f~g~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv 96 (116)
T PTZ00397 18 DAALSDIENAIAD-VLGKPLSYIMSGYDYQKHMRFGGSHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERV 96 (116)
T ss_pred HHHHHHHHHHHHH-HhCCChHHEEEEEeCCceEEECCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 4556666666655 2232 1222 3345555665 67777777666678787788888888888653333 478
Q ss_pred EEEeeccCCCCCccc
Q 023492 263 FVHLDYEYTHRPEHA 277 (281)
Q Consensus 263 ~i~iep~~~~~~~~~ 277 (281)
.|.+..-.++++...
T Consensus 97 ~I~f~~~~~~~w~~~ 111 (116)
T PTZ00397 97 YIEFKDCSAQNWAFN 111 (116)
T ss_pred EEEEEECChhheeEc
Confidence 888877766665543
No 76
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=52.73 E-value=1.3e+02 Score=24.66 Aligned_cols=74 Identities=8% Similarity=0.052 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHhhcCCCcceee--eEEEEEecCeEEEEEEEEcCCCCC--HHHHHHHHHHHHHHHhc-CCCceeEEEEe
Q 023492 192 APEYLQKLTYLCWNHHKSIRHID--TVRAYTFGSHYFVEVDIVLPASMP--LQEAHDIGESLQEKLEL-LPEIERAFVHL 266 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~--~~~~~~~g~~~~v~~~i~v~~~~~--~~~~~~i~~~i~~~l~~-~~~i~~v~i~i 266 (281)
++++.++|++++...+.-...-| |+.+.....+- .+++.+.+.+. ......+.+-|++.|++ .|.+.+|.-..
T Consensus 103 ~~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~~~--~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~~~ 180 (190)
T TIGR03341 103 DAPLEERINYVLQSEINPQLASHGGKVTLVEITDDG--VAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGVRDAT 180 (190)
T ss_pred chHHHHHHHHHHHhccCHHHHhcCCceEEEEEcCCC--EEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceEEEec
Confidence 44477778877753231112222 55555543221 24555544432 23356778899999974 78887664433
Q ss_pred e
Q 023492 267 D 267 (281)
Q Consensus 267 e 267 (281)
+
T Consensus 181 ~ 181 (190)
T TIGR03341 181 D 181 (190)
T ss_pred C
Confidence 3
No 77
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=52.45 E-value=40 Score=21.58 Aligned_cols=49 Identities=8% Similarity=-0.057 Sum_probs=33.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHhcCC--CceeEEEEeeccCCCCCccc
Q 023492 229 VDIVLPASMPLQEAHDIGESLQEKLELLP--EIERAFVHLDYEYTHRPEHA 277 (281)
Q Consensus 229 ~~i~v~~~~~~~~~~~i~~~i~~~l~~~~--~i~~v~i~iep~~~~~~~~~ 277 (281)
++|.+.++.|.++-.++.+.+.+.+.+.. +..++++.++....++....
T Consensus 4 i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~~w~~g 54 (62)
T PRK00745 4 FHIELFEGRTVEQKRKLVEEITRVTVETLGCPPESVDIIITDVKRENWATG 54 (62)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCChhHEEEEEEEcChHHeeEC
Confidence 34555555688888999999999886432 33577888877766655443
No 78
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=52.18 E-value=67 Score=21.91 Aligned_cols=63 Identities=10% Similarity=0.205 Sum_probs=35.0
Q ss_pred chHHHHHhhHHHHHHHHHHHHHHHH-------HH-HhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 023492 15 GSLAIIASTLDSLLDLLSGFILWFT-------AF-SMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQI 77 (281)
Q Consensus 15 ~S~al~ada~~~~~d~~~~~~~l~~-------~~-~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~ 77 (281)
++.+-.++.++.+-|....+...+. .+ ..+++...++..+..++|..-..+-.+++++.++--
T Consensus 11 d~~S~~~~~~~~l~~~~~~i~~~I~~~V~~~l~~~~~~~~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~pS 81 (84)
T PF02790_consen 11 DPASPMMEEMDWLHDFVMIIMIFIFVFVFYFLIYFLFNSKFPNKFFNHNNKLEIIWTIIPAIILLFLAFPS 81 (84)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS--S---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHhHHHHHHHHHHHHhheeeeEeeecccccccccccccccccchhhhhhhhHHHHHHHHHHHhhh
Confidence 3445556666666665544332222 12 222244456777888899999999999988887654
No 79
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=51.67 E-value=42 Score=21.38 Aligned_cols=49 Identities=10% Similarity=0.031 Sum_probs=34.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHhcCCC--ceeEEEEeeccCCCCCccc
Q 023492 229 VDIVLPASMPLQEAHDIGESLQEKLELLPE--IERAFVHLDYEYTHRPEHA 277 (281)
Q Consensus 229 ~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~--i~~v~i~iep~~~~~~~~~ 277 (281)
++|.+.++.|.++-.++.+.+.+.+.+..+ ..++++.++...+++....
T Consensus 4 i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~~~~~g 54 (61)
T PRK02220 4 VHIKLIEGRTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINEMSKNHYAVG 54 (61)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEeChhHeEEC
Confidence 455555566888889999999998865323 3478888877766655443
No 80
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=50.92 E-value=1.6e+02 Score=31.03 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHH-HHHHHHHHHHHHhcCC
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP 257 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~-~~~i~~~i~~~l~~~~ 257 (281)
++++.+++.+-+++...++.++++++.+...+. ...+.++++++.+.++ ..++++++.+...+.|
T Consensus 54 ~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g-~s~i~v~f~~~~d~~~a~~~v~~~l~~~~~~LP 119 (1044)
T TIGR00915 54 AQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDG-SMTITLTFEQGTDPDIAQVQVQNKLQLATPLLP 119 (1044)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCC-eEEEEEEEECCCChHHHHHHHHHHHHHHHhhCC
Confidence 456666677766655666666777776653222 3345555555555443 3556666655444566
No 81
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=50.78 E-value=1.6e+02 Score=25.12 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEE-----EecCe---EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc-CCCce--eEE
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAY-----TFGSH---YFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIE--RAF 263 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~-----~~g~~---~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~-~~~i~--~v~ 263 (281)
..+++.+.+.. ++||.+. ++|+- ..|++ ..+.+.|.-+++.+.+ ....+|++.+.+ .||+. ++.
T Consensus 110 ~eQ~le~tLs~-mDGVi~A-rV~I~lp~~~~~g~~~~P~saSVfIky~~~~nl~---~~v~~IK~LV~nSv~gL~YenIS 184 (246)
T COG4669 110 KEQQLEQTLSK-MDGVISA-RVHISLPEDDDEGKNALPSSASVFIKYSPDVNLS---IYVSQIKRLVANSVPGLQYENIS 184 (246)
T ss_pred HHHHHHHHHHh-cCceEEE-EEEEEcCCCCccCCCCCCceeEEEEEecCCCChh---HhHHHHHHHHHhccCCCchhceE
Confidence 46778888876 8998754 55554 33443 5788888888877654 345666666653 56655 677
Q ss_pred EEeeccCCC
Q 023492 264 VHLDYEYTH 272 (281)
Q Consensus 264 i~iep~~~~ 272 (281)
|...|....
T Consensus 185 VVl~~~~~~ 193 (246)
T COG4669 185 VVLVPASDS 193 (246)
T ss_pred EEEeecccc
Confidence 777777543
No 82
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=50.31 E-value=65 Score=27.48 Aligned_cols=53 Identities=15% Similarity=0.303 Sum_probs=31.7
Q ss_pred ceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeecc
Q 023492 211 RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 269 (281)
Q Consensus 211 ~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~ 269 (281)
.++.++|+|..|.-.. |+++++ .....-+-++.|.+.+++. |..+||+.++..
T Consensus 197 ~g~~~~rvr~~~~~a~----ie~~~~-~~~~~~~~~~~i~~~~~~~-gf~~v~ldl~g~ 249 (252)
T TIGR00268 197 AGVGQVRVRNYDNLAV----IEVPED-ELSKLLNEAEEVRDKFKDI-GFRKVLIDLEGY 249 (252)
T ss_pred cCCCeEEEEecCCeEE----EEECHH-HHHHHHhhHHHHHHHHHHc-CCCeEEEccCCc
Confidence 3467899998876444 455443 1122222256677777764 778888866544
No 83
>PRK00106 hypothetical protein; Provisional
Probab=50.19 E-value=41 Score=32.30 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHh-c--CCCceeEEEEeecc
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE-L--LPEIERAFVHLDYE 269 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~-~--~~~i~~v~i~iep~ 269 (281)
-+++++++..+ +|||. .....+.|+.+.|-+ -|...+-.++..++.+|.+.++ + +||- +.|++-.+
T Consensus 459 rl~~lE~ia~~-~~gV~---~~yaiqaGREiRviV---~p~~v~D~~~~~la~~ia~~Ie~~~~yPG~--ikvtviRe 527 (535)
T PRK00106 459 RLRDLEEIANS-FDGVQ---NSFALQAGREIRIMV---QPEKISDDQVTILAHKVREKIENNLDYPGN--IKVTVIRE 527 (535)
T ss_pred HHHHHHHHHhc-CCcHH---HHHHHhcCCeEEEEe---cCCcCChHHHHHHHHHHHHHHHHhCcCCCc--eEEEEEee
Confidence 35666677765 78865 455666799866433 2444677889999999999996 3 6774 44444444
No 84
>PRK02047 hypothetical protein; Provisional
Probab=50.13 E-value=90 Score=22.16 Aligned_cols=62 Identities=11% Similarity=0.196 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEe--cCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCce
Q 023492 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 260 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~--g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~ 260 (281)
..++..++|.+++..+.|+.. -..++.+.. |+...+++.+.+. +.++ ++.+-+.|++.+.+.
T Consensus 25 ~~~~~~~~v~~iv~~~~~~~~-~~~i~~k~Ss~GkY~Svtv~v~v~---s~eq----~~~iY~~L~~~~~Vk 88 (91)
T PRK02047 25 AHPEFADTIFKVVSVHDPEFD-LEKIEERPSSGGNYTGLTITVRAT---SREQ----LDNIYRALTGHPMVK 88 (91)
T ss_pred CcHhHHHHHHHHHHHhCCCCc-cCceEEccCCCCeEEEEEEEEEEC---CHHH----HHHHHHHHhhCCCEE
Confidence 356788889999977555532 234555544 5555666666666 4343 455566677666763
No 85
>PRK04998 hypothetical protein; Provisional
Probab=50.00 E-value=87 Score=22.02 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCce
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 260 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~ 260 (281)
.++..+.|.+++.++.|+...+ ..|-.+-|+...+++.+.+. +-+ -++.+-+.|++.+++.
T Consensus 25 ~~~~~~~v~~v~~~~~~~~~~~-~~r~S~~GkY~Svtv~v~v~---s~e----q~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 25 RPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITITAT---SIE----QVETLYEELAKIEGVR 85 (88)
T ss_pred cHhHHHHHHHHHHHhCCCCCCc-eEccCCCCEEEEEEEEEEEC---CHH----HHHHHHHHHhcCCCEE
Confidence 5688899999997765553211 22333445555666666666 333 3456677787777764
No 86
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=49.02 E-value=28 Score=36.23 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhcCCCccee----eeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEe
Q 023492 194 EYLQKLTYLCWNHHKSIRHI----DTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 266 (281)
Q Consensus 194 ~~~~~i~~~i~~~~~~v~~i----~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~i 266 (281)
+..+++++.+.+ .++.... .+.+....|+....++.+++.++ +.++..+.++++++.+++.|++.++....
T Consensus 635 ~l~~~lr~~l~~-~~~~~~~~~~~~~~~~~~~~~g~~~~i~v~i~G~-d~~~L~~~a~~v~~~l~~~pgv~dv~~~~ 709 (1021)
T PF00873_consen 635 ELIDELRQKLKQ-LPGARVFVFSPPDLRGLGSGPGSSAPIQVEIYGD-DLEELRKAAEKVKAKLAEIPGVTDVRDDW 709 (1021)
T ss_dssp HHHHHHHHHCCT-STSSEEEEEEHCSSCCCCSSSSEEEEEEEECSSS-CHHHHHHHHHHHHHHHHHSTTEEEEEESS
T ss_pred HHHHHHHHhhhh-CCCcceeccccccccccccccccceeeeeccCCC-CHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 566667776654 5664311 11222233455667777777665 67899999999999999999987765543
No 87
>PF01390 SEA: SEA domain; InterPro: IPR000082 SEA is an extracellular domain associated with O-glycosylation []. Proteins found to contain SEA-modules include, agrin, enterokinase, 63 kDa Strongylocentrotus purpuratus (Purple sea urchin) sperm protein, perlecan (heparan sulphate proteoglycan core, mucin 1 and the cell surface antigen, 114/A10, and two functionally uncharacterised, probably extracellular, Caenorhabditis elegans proteins. Despite the functional diversity of these adhesive proteins, a common denominator seems to be their existence in heavily glycosylated environments. In addition, the better characterised proteins all contain O-glycosidic-linked carbohydrates such as heparan sulphate that contribute considerably to their molecular masses. The common module might regulate or assist binding to neighbouring carbohydrate moieties. Enterokinase, the initiator of intestinal digestion, is a mosaic protease composed of a distinctive assortment of domains []. ; PDB: 2ACM_B 1IVZ_A 2E7V_A.
Probab=48.05 E-value=30 Score=24.79 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEecC-eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFGS-HYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 255 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g~-~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~ 255 (281)
..+.+.+...+ .+.-..+..+++++..+ .+.+++.+.+.++.+ .....+.+.+++.+.+
T Consensus 36 i~~~i~~~~~~-~~~~~~~~~~~I~~f~~gsViv~~~~~f~~~~~-~~~~~~~~~l~~~l~~ 95 (107)
T PF01390_consen 36 IEDQINSVFRN-SSLSPGFVGVTITSFRPGSVIVDFDVIFDPPSS-APPADIEEALQNALQQ 95 (107)
T ss_dssp HHHHHHHHHHT-STTTTTEEEEEEEEEEETEEEEEEEEEEETTT--S-HHHHHHHHHHHHCC
T ss_pred HHHHHHHhhcc-CccCCCcceEEEEEEECCCEEEEEEEEEeCCCC-CCHHHHHHHHHHHHHh
Confidence 34444554443 21114566777777754 488888888854432 3345666777777755
No 88
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase. This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein.
Probab=47.62 E-value=1.4e+02 Score=23.49 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhHHhhhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 023492 101 WVVGIMLSVTLVKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVL 180 (281)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~~~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~~~~~~D~i~s~~i~~~i~~~~~~~~~ 180 (281)
+..+....+.+.+..-....||.+...-.....+.+.|.++ .++.-+.+..... ...+...++..++++-.++|+.|
T Consensus 22 ~a~~~l~~a~~~D~~DG~vAR~~~~~s~~G~~lDsl~D~vs--fgvaPa~l~~~~~-~~~~~~~~~~~~~~l~~a~RLAr 98 (151)
T TIGR00473 22 RACFLILLSMFFDFLDGRVARKTNRVSDFGKELDSLADVVS--FGVAPAALAYSIG-NFQTIGILVAALFFLCGILRLAR 98 (151)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHcCCCChHHHHHHHHHHHHH--HHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHH
Confidence 34444456667777777788887766667778899999996 4555554443221 12233334445677889999988
Q ss_pred HHHH
Q 023492 181 ENVN 184 (281)
Q Consensus 181 ~~~~ 184 (281)
-+.+
T Consensus 99 FN~~ 102 (151)
T TIGR00473 99 FNVL 102 (151)
T ss_pred hccc
Confidence 7754
No 89
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=47.23 E-value=59 Score=20.78 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHhc-C-CCceeEEEEeeccCCCCCc
Q 023492 227 VEVDIVLPASMPLQEAHDIGESLQEKLEL-L-PEIERAFVHLDYEYTHRPE 275 (281)
Q Consensus 227 v~~~i~v~~~~~~~~~~~i~~~i~~~l~~-~-~~i~~v~i~iep~~~~~~~ 275 (281)
+.+++. +++.+.++-.++.+.+.+.+.+ . ....+++|.++....++..
T Consensus 3 i~i~i~-~~grt~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~e~~~~~w~ 52 (63)
T TIGR00013 3 VNIYIL-KEGRTDEQKRQLIEGVTEAMAETLGANLESIVVIIDEMPKNNYG 52 (63)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHee
Confidence 334444 3567889989999999998864 2 2344788888877666554
No 90
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=46.84 E-value=2.1e+02 Score=29.96 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCC
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLP 257 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~ 257 (281)
++++.++|.+-+++++.++.+++.+..........+.++....-+.+.. ..++++++.+.-.+.|
T Consensus 55 ae~ve~~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~d~d~A-~~~V~~kv~~~~~~LP 119 (1009)
T COG0841 55 AETVEDSVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGTDPDTA-AVQVQNKIQQAESRLP 119 (1009)
T ss_pred HHHHHHHHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCCChHHH-HHHHHHHHHHHHhcCC
Confidence 4577888888888777888888888777665444444444433332211 2355555554444444
No 91
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=46.20 E-value=95 Score=21.28 Aligned_cols=64 Identities=9% Similarity=0.180 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEE
Q 023492 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 264 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i 264 (281)
..|+.++++...... .| ..+..+.+-.....-.-.+.+.+.+ ++..+++.+.|+|.+.+.+|.+
T Consensus 12 n~pGVL~Ri~~lf~r--RG-fnI~sl~v~~t~~~~~sriti~v~~-------~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 12 FRPEVLERVLRVVRH--RG-FQVCSMNMTQNTDAQNINIELTVAS-------ERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CCccHHHHHHHHHhc--CC-eeeeeEEeeecCCCCEEEEEEEECC-------CchHHHHHHHHhcCcCeEEEEE
Confidence 356788999988864 66 4466666655433334455555542 3455667788888888877765
No 92
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=45.80 E-value=50 Score=21.35 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=32.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCCc
Q 023492 229 VDIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRPE 275 (281)
Q Consensus 229 ~~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~~ 275 (281)
++|.+.+..|.++-.++.+.+.+.+.+. ....++.+.++....++..
T Consensus 4 v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~ 52 (64)
T PRK01964 4 VQIQLLEGRPEEKIKNLIREVTEAISATLDVPKERVRVIVNEVPSSHWG 52 (64)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEcChHHee
Confidence 3455545568888899999999888642 2334778888777665544
No 93
>PRK12704 phosphodiesterase; Provisional
Probab=45.39 E-value=55 Score=31.35 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCC-CCCHHHHHHHHHHHHHHHh-c--CCCceeEEE
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPA-SMPLQEAHDIGESLQEKLE-L--LPEIERAFV 264 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~-~~~~~~~~~i~~~i~~~l~-~--~~~i~~v~i 264 (281)
.+++++++..+ ++||... ...+.|+.+.| .|+| ..+-.++..++++|.+.++ + +||-..|||
T Consensus 444 rl~~le~i~~~-~~gv~~~---yaiqaGreirv----~v~~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtv 509 (520)
T PRK12704 444 RLEKLEEIANS-FEGVEKA---YAIQAGREIRV----IVKPDKVDDLQAVRLARDIAKKIEEELQYPGQIKVTV 509 (520)
T ss_pred HHHHHHHHHHh-CCcHHHH---HHHhcCceEEE----EeCCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEE
Confidence 35566666665 7887644 44567987654 3434 4677889999999999996 3 677544544
No 94
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=44.53 E-value=2.1e+02 Score=26.33 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=49.8
Q ss_pred hCCHHHHHhHHhhhHHHHHHHHHHHHHHHHhh--------hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 023492 123 FTNEIVKAYAQDHFFDVITNIIGLVAVLLANY--------IDDWMDPVGAIILALYTIRTWSMTVLENVNSLVG 188 (281)
Q Consensus 123 ~~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~--------~~~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll~ 188 (281)
.+|..+.+++.|.++|++.=.+++.+.-.... .|...|..++++=+++.......+..|+...+..
T Consensus 32 ~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~alc~~I~~EA~~R~I~ 105 (404)
T KOG1483|consen 32 TNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTALCVSILIEAIERIIE 105 (404)
T ss_pred cchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcC
Confidence 37889999999999999863222222222211 1567899999999999999999999999998875
No 95
>cd02412 30S_S3_KH K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=44.02 E-value=92 Score=22.85 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=31.7
Q ss_pred eeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023492 212 HIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 212 ~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
.+.++.+.+......+.+|..-|+-.- ..--+..+++++.+++..+..++.|++.+
T Consensus 50 gis~I~I~R~~~~i~I~I~t~rPg~vI-G~~G~~i~~L~~~l~~~~~~~~~~I~V~e 105 (109)
T cd02412 50 GISRIEIERKADRVEVTIHTARPGIII-GKKGAGIEKLRKELQKLLGNKKVRINIVE 105 (109)
T ss_pred CccEEEEEEcCCCEEEEEEeCCCCccc-CCchHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 466888888666688888887765542 22223334445555443232245555543
No 96
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=43.24 E-value=1.4e+02 Score=22.23 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHhhcC-CCc-ceeeeEEEEE---e-c-C-eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEE
Q 023492 192 APEYLQKLTYLCWNHH-KSI-RHIDTVRAYT---F-G-S-HYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAF 263 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~-~~v-~~i~~~~~~~---~-g-~-~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~ 263 (281)
..+..++|.+.+++.. |++ .++.|+-..+ . + . ...+.+...- +.++.. ..+.+++++.+++.+++.++.
T Consensus 10 ~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~-~gCP~~--~~i~~~v~~al~~~~~v~~v~ 86 (111)
T COG2151 10 IKVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTS-PGCPLA--EVIADQVEAALEEIPGVEDVE 86 (111)
T ss_pred hhhhHHHHHHHhhcCCCcccceeeEeeccEEEEEEecCCceEEEEEecCC-CCCCcc--HHHHHHHHHHHHhcCCcceEE
Confidence 4456777777776621 332 2233332211 1 1 1 2333333333 567654 688999999999988888777
Q ss_pred EEeeccC
Q 023492 264 VHLDYEY 270 (281)
Q Consensus 264 i~iep~~ 270 (281)
+++.-+.
T Consensus 87 V~l~~~p 93 (111)
T COG2151 87 VELTLSP 93 (111)
T ss_pred EEEEEcC
Confidence 7766654
No 97
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=42.69 E-value=1.3e+02 Score=21.96 Aligned_cols=75 Identities=9% Similarity=0.023 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeecc
Q 023492 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 269 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~ 269 (281)
.|...++++-..+.+ ..|=.++.++++-+.-.. -++.+.|.-+ +.+..++|.+++++.-...+...++....-|.
T Consensus 13 iDSgil~~vLD~I~d-~GG~F~i~~~~vG~~~~d~S~a~l~V~a~---d~~~L~~Il~~L~~lga~~~~~~d~~l~~a~~ 88 (103)
T PF04455_consen 13 IDSGILNRVLDIIMD-MGGDFEILEFDVGKSKDDTSYARLQVSAP---DEEHLDEILDELHQLGAVPVEPQDAELEPAPK 88 (103)
T ss_dssp TTSSHHHHHHHHHHH-TT-EEEEEEEE--SSTTS-EEEEEEEEES---SHHHHHHHHHHHHHHHHHSCCCCEEEECESSC
T ss_pred echhhHHHHHHHHHh-cCCCEEEEEEEeCCCCCCceeEEEEEecC---CHHHHHHHHHHHHHHcCCCCCCcccEEEEcCC
Confidence 455678888888877 688778888888655443 4666666666 55677888888877666655666665544333
No 98
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=42.47 E-value=2.4e+02 Score=29.68 Aligned_cols=66 Identities=9% Similarity=0.191 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCC
Q 023492 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLP 257 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~ 257 (281)
.++++.+.|.+-+++.+.++.++++++....+..-.+.+......++.. ..+++++++.+.-.+.|
T Consensus 64 s~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g~d~~~-a~~ev~~~i~~~~~~LP 129 (1040)
T PRK10503 64 SPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDV-AEQEVQAAINAATNLLP 129 (1040)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECCCChHH-HHHHHHHHHHHHHHhCC
Confidence 3456666676666666667777778777665544445555544333321 13445555544322355
No 99
>PRK00341 hypothetical protein; Provisional
Probab=41.95 E-value=1.3e+02 Score=21.46 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEe--cCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCce
Q 023492 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 260 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~--g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~ 260 (281)
..++..+.|.+++.++. .. +...+..+.. |+...+++.+.+. +.++ ++.+-+.|++.+.|.
T Consensus 26 ~~~~~~~~V~~iv~~~~-~~-~~~~~~~k~Ss~GkY~S~tv~i~~~---s~~q----~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 26 TGVGFKDLVIEILQKHA-DV-DLSTLAERQSSNGKYTTVQLHIVAT---DEDQ----LQDINSALRATGRVH 88 (91)
T ss_pred CchhHHHHHHHHHHHhC-CC-cccceeeccCCCCEEEEEEEEEEEC---CHHH----HHHHHHHHhhCCCEE
Confidence 46788899999997643 22 2344444444 4445566666665 3333 455567777767764
No 100
>PRK04191 rps3p 30S ribosomal protein S3P; Reviewed
Probab=41.57 E-value=93 Score=25.87 Aligned_cols=73 Identities=10% Similarity=-0.079 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeecc
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYE 269 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~ 269 (281)
...++++.+.+.+.. .++.++.+.+......+.+|..-|+ .-+..-.+-.+++++.+++..+..++.+++.+-
T Consensus 13 ~~~~irefi~~~~~~-AgIs~IeI~Rt~~~i~I~I~ta~PG-ivIGk~G~~I~klk~~Lkk~~~~~~v~I~v~ev 85 (207)
T PRK04191 13 KKVMIDEYLAKELYR-AGYGGMEIKKTPLGTRITIYAERPG-MVIGRGGKNIRELTEILEKKFGLENPQIDVKEV 85 (207)
T ss_pred HHHHHHHHHHhhhhh-cceeEEEEEEcCCcEEEEEEECCCC-eEECCCchhHHHHHHHHHHHhCCCceeEEEEEE
Confidence 345566666553322 4577888877666678888874443 222222222344444444333433455555443
No 101
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=41.20 E-value=3e+02 Score=28.99 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEe-cCeEEEEEEEEcCCCCCHHH-HHHHHHHHHHHHhcCC
Q 023492 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP 257 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~-g~~~~v~~~i~v~~~~~~~~-~~~i~~~i~~~l~~~~ 257 (281)
.|+++.++|.+-+++.+.++.++++++.... ...-.+.+ +++++.+.++ .+++++++.+.-.+.|
T Consensus 53 sp~~vE~~Vt~plE~~l~~v~gv~~i~S~S~~~G~s~i~v--~f~~g~d~~~a~~~V~~~v~~~~~~LP 119 (1037)
T PRK10555 53 SAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTL--SFKAGTDPDEAVQQVQNQLQSAMRKLP 119 (1037)
T ss_pred CHHHHHHHHhHHHHHHhcCCCCceEEEEEecCCCeEEEEE--EEECCCCHHHHHHHHHHHHHHHHHhCC
Confidence 3567777777777766677777777777653 22233333 3344444332 4455555544333455
No 102
>PRK09577 multidrug efflux protein; Reviewed
Probab=40.93 E-value=3.2e+02 Score=28.73 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHH-HHHHHHHHHHHHhcCC
Q 023492 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP 257 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~-~~~i~~~i~~~l~~~~ 257 (281)
.|+++.++|.+-+++.+.++.++++++...... ...+.++++++.+.+. ..++++++.+.-.+.|
T Consensus 53 sp~~VE~~Vt~plE~~L~~v~gv~~i~S~S~~G--~s~I~v~f~~g~d~~~a~~~V~~~v~~~~~~LP 118 (1032)
T PRK09577 53 SAQVVEESVTALIEREMNGAPGLLYTSATSSAG--QASLSLTFKQGVNADLAAVEVQNRLKTVEARLP 118 (1032)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCceEEEEEecCC--eEEEEEEEECCCChHHHHHHHHHHHHHHHHhCC
Confidence 455667777777766666666666666554433 3455555555555443 2445555544323455
No 103
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=40.60 E-value=1e+02 Score=20.06 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHH
Q 023492 62 GILVFASVMATLGLQI---ILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVK 113 (281)
Q Consensus 62 ~~li~~~~ll~~~~~~---~~esi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (281)
+-++.++.+++.|... +.+.+.+.+.++++ ...+|.++-+.++.++.
T Consensus 6 ~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t-----~~t~~~ligG~va~ivG 55 (59)
T PF11381_consen 6 ALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPT-----DKTIWYLIGGAVAVIVG 55 (59)
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCC-----chhHHHHHhHHHHHHHH
Confidence 4456666666666543 33456677777773 33566666666655544
No 104
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=40.46 E-value=94 Score=19.86 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=32.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHhcCCC--ceeEEEEeeccCCCCCc
Q 023492 229 VDIVLPASMPLQEAHDIGESLQEKLELLPE--IERAFVHLDYEYTHRPE 275 (281)
Q Consensus 229 ~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~--i~~v~i~iep~~~~~~~ 275 (281)
+++.+.++.+.++-.++.+.+.+.+.+..+ ...++|.++.-..++..
T Consensus 4 i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~~~~ 52 (60)
T PRK02289 4 VRIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEGTYY 52 (60)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChhheE
Confidence 456666677999999999999999965323 34677777766554433
No 105
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=40.10 E-value=2.6e+02 Score=29.30 Aligned_cols=65 Identities=9% Similarity=0.075 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHH-HHHHHHHHHHHHhcCC
Q 023492 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP 257 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~-~~~i~~~i~~~l~~~~ 257 (281)
.++++.++|.+-+++.+.++.++++++.......-.+.+... ++.+.++ ..++++++.+...+.|
T Consensus 55 s~~~ve~~vt~piE~~l~~i~gv~~i~S~s~~G~s~i~l~f~--~~~d~~~a~~~v~~~v~~~~~~LP 120 (1025)
T PRK10614 55 SPETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILQFD--FDRDINGAARDVQAAINAAQSLLP 120 (1025)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEE--CCCChHHHHHHHHHHHHHHHhhCC
Confidence 355666666655555555556666666554433344444443 4333332 3455555544333455
No 106
>COG1279 Lysine efflux permease [General function prediction only]
Probab=39.57 E-value=2.2e+02 Score=23.59 Aligned_cols=61 Identities=8% Similarity=-0.038 Sum_probs=47.0
Q ss_pred CHHHHHhHHhhhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023492 125 NEIVKAYAQDHFFDVITNIIGLVAVLLANYIDDWMDPVGAIILALYTIRTWSMTVLENVNS 185 (281)
Q Consensus 125 s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~~~~~~D~i~s~~i~~~i~~~~~~~~~~~~~~ 185 (281)
+-.+...+.+...|...-..++.+.-....-.+++.++.-..=+.++++.++...|++.+.
T Consensus 34 ~~~l~~~~~c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~yg~~a~~~a~~~ 94 (202)
T COG1279 34 EYVLPIALLCAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLYYGLLALKSAPRG 94 (202)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5567777888888988744444443343444789999999999999999999999999883
No 107
>PRK09579 multidrug efflux protein; Reviewed
Probab=38.91 E-value=3e+02 Score=28.94 Aligned_cols=65 Identities=14% Similarity=0.023 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHH-HHHHHHHHHHHHhcCC
Q 023492 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP 257 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~-~~~i~~~i~~~l~~~~ 257 (281)
.++++.+.|.+-+++.+.++.++++++.......- .+.++++++.+.++ ..++++++.+.-.+.|
T Consensus 55 spe~vE~~Vt~plE~~L~~v~gi~~i~S~S~~G~s--~I~v~f~~g~d~~~a~~~v~~~v~~v~~~LP 120 (1017)
T PRK09579 55 NAETIQGYITQPLQQSLASAEGIDYMTSVSRQNFS--IISIYARIGADSDRLFTELLAKANEVKNQLP 120 (1017)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeE--EEEEEEECCCCHHHHHHHHHHHHHHHHHhCC
Confidence 35566777777776666677777777766543333 34444555544433 4455555543322355
No 108
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=38.72 E-value=1.1e+02 Score=19.89 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEe
Q 023492 194 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 266 (281)
Q Consensus 194 ~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~i 266 (281)
+..+++.+.+.+ .|+|.+++.+ .|+. +.+.+.. + +.++ +.+-+.+.+.+.|++.++...+
T Consensus 10 ~~~~~~~~~l~~-~p~V~~~~~v----tG~~d~~~~v~~--~---d~~~---l~~~i~~~l~~~~gV~~~~t~i 70 (74)
T PF01037_consen 10 DAYDEFAEALAE-IPEVVECYSV----TGEYDLILKVRA--R---DMEE---LEEFIREKLRSIPGVRRTETSI 70 (74)
T ss_dssp THHHHHHHHHHT-STTEEEEEEE----SSSSSEEEEEEE--S---SHHH---HHHHHHHTHHTSTTEEEEEEEE
T ss_pred chHHHHHHHHHc-CCCEEEEEEE----eCCCCEEEEEEE--C---CHHH---HHHHHHHHhhcCCCEEEEEEEE
Confidence 357888888876 8997766432 2433 5544444 4 4444 4444555588889998776554
No 109
>PRK06937 type III secretion system protein; Reviewed
Probab=38.08 E-value=2.3e+02 Score=23.30 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCCCCc
Q 023492 238 PLQEAHDIGESLQEKLELLPEIERAFVHLDYEYTHRPE 275 (281)
Q Consensus 238 ~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~~~~~ 275 (281)
++++.+.+++.+.+.+++.++...+.|..||.-....|
T Consensus 138 ~P~D~~~v~~~~~~~~~~~~~~~~l~i~~D~~L~~Ggc 175 (204)
T PRK06937 138 NPDQAAAVREQIAKVLKDFPEVGYLEVVADARLDQGGC 175 (204)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCccEEEEeCCCCCCCCe
Confidence 34567778888877777777777888888887654443
No 110
>PRK09579 multidrug efflux protein; Reviewed
Probab=38.02 E-value=84 Score=32.88 Aligned_cols=72 Identities=7% Similarity=0.040 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhcCCCcceeeeEEEEEe-cCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEe
Q 023492 193 PEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHL 266 (281)
Q Consensus 193 ~~~~~~i~~~i~~~~~~v~~i~~~~~~~~-g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~i 266 (281)
++..+++++.+.+ .||+..+ ....... |..-...+.+++..+-+.++..+.++++++.+++.+++.++....
T Consensus 622 ~~~~~~l~~~l~~-~p~~~~~-~~~~~~~~g~g~~~~v~i~i~gg~d~~~L~~~a~~l~~~l~~~~g~~~v~~~~ 694 (1017)
T PRK09579 622 MELLPLVQAKLEE-IPGLQIF-GFNLPSLPGTGEGLPFQFVINTANDYESLLQVAQRVKQRAQESGKFAFLDIDL 694 (1017)
T ss_pred HHHHHHHHHHHhc-CCCcEEE-eecCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHcCCCcEEeeccc
Confidence 3567777777755 7775422 1111011 211111244444332367889999999999999989987765443
No 111
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=37.86 E-value=1.5e+02 Score=21.05 Aligned_cols=65 Identities=15% Similarity=0.044 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEE
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 265 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~ 265 (281)
.++++.+.+++..++-..+++.+..-.+=. ..+.+.+.++++- . -.+.+++.+++..++.++.|.
T Consensus 18 Dle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~--g----~td~lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 18 DLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAE--G----GTEAAEESLSGIEGVESVEVT 83 (88)
T ss_pred CHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCC--c----ChHHHHHHHhcCCCccEEEEE
Confidence 355555555554454455666666666655 5677888776552 1 125567788888888877653
No 112
>COG3518 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.64 E-value=37 Score=26.90 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHhcC-CCceeEEEEeeccCCC
Q 023492 238 PLQEAHDIGESLQEKLELL-PEIERAFVHLDYEYTH 272 (281)
Q Consensus 238 ~~~~~~~i~~~i~~~l~~~-~~i~~v~i~iep~~~~ 272 (281)
+..+.+++++.|++.|.++ |.+.+|.++++|...+
T Consensus 82 ~~~~~~~i~r~I~~~Ie~fEPRL~~V~v~~~~~~~~ 117 (157)
T COG3518 82 LFRDSHQIARAIRAAIERFEPRLSRVEVQLLPGRGD 117 (157)
T ss_pred ccccHHHHHHHHHHHHHHhCchhhheeeeeccCCCC
Confidence 3456789999999999874 8999999999998654
No 113
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=37.59 E-value=1.2e+02 Score=21.08 Aligned_cols=38 Identities=21% Similarity=0.441 Sum_probs=25.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHHhc-CCCce-eEEE
Q 023492 227 VEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEIE-RAFV 264 (281)
Q Consensus 227 v~~~i~v~~~~~~~~~~~i~~~i~~~l~~-~~~i~-~v~i 264 (281)
|++.+.-...++..-.+.+.+++.++|++ +|... ++.|
T Consensus 3 VEi~~dK~~~lp~ga~~AL~~EL~kRl~~~fPd~~~~v~V 42 (81)
T PRK10597 3 IEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSV 42 (81)
T ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCccEEE
Confidence 44444444556766778899999999975 66643 3444
No 114
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.40 E-value=1.2e+02 Score=19.82 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEec-CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCce
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFG-SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 260 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g-~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~ 260 (281)
.+..+.+|.+.+.+ .| .++.++...+.. ....+.+.++++ +.++.++ +.+.|++.|++.
T Consensus 9 ~~g~L~~i~~~i~~--~~-~nI~~v~~~~~~~~~~~~~~~vev~---~~~~l~~----i~~~L~~i~gV~ 68 (74)
T cd04887 9 RPGMLGRVTTAIGE--AG-GDIGAIDLVEQGRDYTVRDITVDAP---SEEHAET----IVAAVRALPEVK 68 (74)
T ss_pred CCchHHHHHHHHHH--cC-CcEEEEEEEEecCCEEEEEEEEEcC---CHHHHHH----HHHHHhcCCCeE
Confidence 34578889999976 33 335566665553 346677777776 3333333 556677777753
No 115
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=37.34 E-value=3e+02 Score=28.98 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCcceeeeEEEEEe-cCeEEEEEEEEcCCCCCHHH-HHHHHHHHHHHHhcCC
Q 023492 190 SAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP 257 (281)
Q Consensus 190 ~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~-g~~~~v~~~i~v~~~~~~~~-~~~i~~~i~~~l~~~~ 257 (281)
..|+++.+.|.+-+++.+.++.++++++.... ...-.+.+. ++++.+.++ ..++++++.+.-.+.|
T Consensus 52 asp~~vE~~Vt~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~--f~~g~d~~~a~~~V~~~i~~~~~~LP 119 (1049)
T PRK15127 52 ADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLT--FESGTDADIAQVQVQNKLQLAMPLLP 119 (1049)
T ss_pred CCHHHHHHHhhHHHHHHhcCCCCceEEEEEecCCceEEEEEE--EECCCChHHHHHHHHHHHHHHHhhCC
Confidence 34667778888877776777777778777653 222233333 333433333 3455555544333466
No 116
>PHA02568 J baseplate assembly protein; Provisional
Probab=36.62 E-value=1.4e+02 Score=26.36 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCcceee-eEEEEEecCe-EEEEEEEEcCCCCC
Q 023492 190 SAAPEYLQKLTYLCWNHHKSIRHID-TVRAYTFGSH-YFVEVDIVLPASMP 238 (281)
Q Consensus 190 ~~~~~~~~~i~~~i~~~~~~v~~i~-~~~~~~~g~~-~~v~~~i~v~~~~~ 238 (281)
.|+++++++|++.+.. ++++.+- .+.+...... +.+++++.+.++.+
T Consensus 180 ~ps~~Ll~~V~~~l~~--e~vrPl~d~VtV~sa~~v~~~I~a~l~l~~g~~ 228 (300)
T PHA02568 180 TASEDLLAAVRAALNR--EDVRPVTDRVTVQSATIVPYQIRATLYLYPGPD 228 (300)
T ss_pred CCCHHHHHHHHHHhcc--cccCCCCCEEEEECCEEEEEEEEEEEEEcCCCC
Confidence 5788999999999953 5666554 4444444433 77888888876654
No 117
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=36.09 E-value=1.3e+02 Score=20.03 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEec------CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFG------SHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 255 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g------~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~ 255 (281)
.|....+|.+.+.+ .| .++.+++....+ ......+.+.+|++.+. .++.+.+++.-++
T Consensus 9 ~~Giv~~it~~l~~--~~-~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~---~~l~~~l~~l~~~ 72 (81)
T cd04869 9 RPGIVHEVTQFLAQ--RN-INIEDLSTETYSAPMSGTPLFKAQATLALPAGTDL---DALREELEELCDD 72 (81)
T ss_pred CCCHHHHHHHHHHH--cC-CCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCH---HHHHHHHHHHHHH
Confidence 45688899999976 34 346666666555 34667777777766554 4555556554443
No 118
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=35.79 E-value=1.3e+02 Score=27.36 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=60.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 023492 17 LAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTLVSNED 90 (281)
Q Consensus 17 ~al~ada~~~~~d~~~~~~~l~~~~~~~~~~~~~~p~G~~r~e~l~~li~~~~ll~~~~~~~~esi~~l~~~~~ 90 (281)
..+-+.=+|-+.|++=++..+.+..+..-.| +|.-.+++=.++.+++.+.....++...+..|+++.|
T Consensus 224 ~nvraAyiHVlGDliQSvGV~iaa~Ii~f~P------~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P 291 (379)
T KOG1482|consen 224 LNVRAAFVHVLGDLIQSVGVLIAALIIYFKP------EYKIADPICTFVFSIIVLGTTITILRDILGILMEGTP 291 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhheeEEecc------cceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCC
Confidence 5566777899999999999988888777666 6778999999999999999999999999999999887
No 119
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=35.26 E-value=3.2e+02 Score=24.13 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCHHHHHhHHhhhHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023492 112 VKLLLVVYCRAFTNEIVKAYAQDHFFDVITNIIGLVAVLLANYI------DDWMDPVGAIILALYTIRTWSMTVLENVNS 185 (281)
Q Consensus 112 ~~~~l~~~~~~~~s~~l~a~~~~~~~D~~~s~~~v~~~~~~~~~------~~~~D~i~s~~i~~~i~~~~~~~~~~~~~~ 185 (281)
+......|...+....--++......|.+.+.=.++.++.+..+ +.+-=-.+++.++++++....+...|+++.
T Consensus 90 iGv~aaIYL~EYa~~~~~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g~~~S~laGaLaLall~LP~iirtteeaL~~ 169 (292)
T COG0581 90 LGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFFVVTLGFGFSALAGALALALLMLPVVIRTTEEALRA 169 (292)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445566666554445555666777777765455555544322 245555678888888988888888888773
No 120
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=35.08 E-value=66 Score=20.40 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCCceeEEEEeec
Q 023492 243 HDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 243 ~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
....+++++.|++.||+.++.+.++.
T Consensus 10 ~~C~~~v~~~l~~~~GV~~v~vd~~~ 35 (62)
T PF00403_consen 10 EGCAKKVEKALSKLPGVKSVKVDLET 35 (62)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEETTT
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 45778899999999999877665443
No 121
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=34.21 E-value=1.3e+02 Score=21.50 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=21.5
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHH
Q 023492 225 YFVEVDIVLPASMPLQEAHDIGESLQE 251 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~ 251 (281)
+.+++++.+|++++.++++++..+=++
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~a~Eka 28 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIKAREKA 28 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999988887664333
No 122
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=33.97 E-value=1.7e+02 Score=20.69 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCC-CCHHHHHHHHHHHHHHHhcCCCceeEEEE
Q 023492 196 LQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPAS-MPLQEAHDIGESLQEKLELLPEIERAFVH 265 (281)
Q Consensus 196 ~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~-~~~~~~~~i~~~i~~~l~~~~~i~~v~i~ 265 (281)
++++.+.+++..+.-....+.+..-.+=. ..+.+.+.++.+ -. .+.+++.+++.++++++.|.
T Consensus 19 l~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~~~~-------td~lee~i~~~e~Vqsvei~ 83 (88)
T PRK00435 19 LDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDEEGG-------TEPVEEAFANVEGVESVEVE 83 (88)
T ss_pred HHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcCCcC-------cHHHHHHHhccCCCcEEEEE
Confidence 44444444443344344666666666655 566777777554 22 25567777777888877653
No 123
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.45 E-value=1.4e+02 Score=19.50 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhcCCCcceeeeEEEEEe-cCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEE
Q 023492 193 PEYLQKLTYLCWNHHKSIRHIDTVRAYTF-GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 264 (281)
Q Consensus 193 ~~~~~~i~~~i~~~~~~v~~i~~~~~~~~-g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i 264 (281)
+....++-+.+.+ .+ .++..+..... +....+.+.+++.+ .+.-.+++.+.|++.|++.+|.+
T Consensus 11 ~g~l~~I~~~la~--~~-inI~~i~~~~~~~~~~~i~~~v~v~~------~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 11 PGVLSKVLNTIAQ--VR-GNVLTINQNIPIHGRANVTISIDTST------MNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred CchHHHHHHHHHH--cC-CCEEEEEeCCCCCCeEEEEEEEEcCc------hHHHHHHHHHHHhcCCCeEEEEE
Confidence 5678888888876 23 23444433221 22345666666542 23344666777888899988764
No 124
>PRK15082 glutathione ABC transporter permease GsiD; Provisional
Probab=33.27 E-value=3.4e+02 Score=23.85 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=24.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhh-c-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023492 132 AQDHFFDVITNIIGLVAVLLANYI-D-DWMDPVGAIILALYTIRTWSMTVLENVNSLV 187 (281)
Q Consensus 132 ~~~~~~D~~~s~~~v~~~~~~~~~-~-~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll 187 (281)
......|.+.+.=.++.+.+...+ . .... ..+++++.......+.+|.....+.
T Consensus 134 ~l~~l~~~~~aiP~~~l~ill~~~~g~g~~~--~ilal~l~~~~~~~r~vR~~~~~~~ 189 (301)
T PRK15082 134 IIMRICDVLFAFPGILLAIAVVAILGSGMAN--VIIAVAIFSIPAFARLVRGNTLVLK 189 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566766653333333332222 1 1111 2334444445556666666666554
No 125
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=32.07 E-value=98 Score=26.33 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCCceeEEEEeeccC--CCCCcccccC
Q 023492 243 HDIGESLQEKLELLPEIERAFVHLDYEY--THRPEHAQAH 280 (281)
Q Consensus 243 ~~i~~~i~~~l~~~~~i~~v~i~iep~~--~~~~~~~~~~ 280 (281)
..+.+++++.|.+.+||.++.+|+--+. .+.+...|.|
T Consensus 108 ~~~eQ~le~tLs~mDGVi~ArV~I~lp~~~~~g~~~~P~s 147 (246)
T COG4669 108 YAKEQQLEQTLSKMDGVISARVHISLPEDDDEGKNALPSS 147 (246)
T ss_pred HHHHHHHHHHHHhcCceEEEEEEEEcCCCCccCCCCCCce
Confidence 3456788888888999999999998653 3344444443
No 126
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.95 E-value=1.6e+02 Score=19.79 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCC---CHHHHHHHHHHHHHHH
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASM---PLQEAHDIGESLQEKL 253 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~---~~~~~~~i~~~i~~~l 253 (281)
-|....++.+.+.+ .| .++++.|+........++.....+++- +.+..+++.+.+++.+
T Consensus 10 r~gLfa~i~~~l~~--~~-l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L 71 (76)
T cd04927 10 RKGLLHDVTEVLYE--LE-LTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVL 71 (76)
T ss_pred CCCHHHHHHHHHHH--CC-CeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 35678888888875 44 668898998644445555555555442 2233444444444444
No 127
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=31.63 E-value=1.6e+02 Score=19.57 Aligned_cols=60 Identities=15% Similarity=0.245 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCC--HHHHHHHHHHHHHHHh-cCCCceeE
Q 023492 194 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMP--LQEAHDIGESLQEKLE-LLPEIERA 262 (281)
Q Consensus 194 ~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~--~~~~~~i~~~i~~~l~-~~~~i~~v 262 (281)
+.+++|+-.+.. +| -|+.+.....+ .+++.+.+.+. ......+.+.|++.|+ +.|.+.+|
T Consensus 3 ~~l~~IrP~L~~--dG----Gdv~lv~v~~~---~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V 65 (68)
T PF01106_consen 3 EVLEEIRPYLQS--DG----GDVELVDVDDG---VVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRV 65 (68)
T ss_dssp HHHHHCHHHHHH--TT----EEEEEEEEETT---EEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEE
T ss_pred HHHHHhChHHHh--cC----CcEEEEEecCC---EEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceE
Confidence 345567777765 33 26666666555 55666655543 2234667788999896 57776554
No 128
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC. This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=31.49 E-value=3.3e+02 Score=23.18 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=9.3
Q ss_pred CCCCCCCCCccch
Q 023492 45 TPNPYQYPIGKKR 57 (281)
Q Consensus 45 ~~~~~~~p~G~~r 57 (281)
.||+.+||+|-.+
T Consensus 36 ~~P~~~~~lGTd~ 48 (258)
T TIGR02790 36 LGPSMEYWLGTDH 48 (258)
T ss_pred CCCCCCCCCCCCC
Confidence 4667889998643
No 129
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=31.24 E-value=54 Score=20.28 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=14.0
Q ss_pred ccchhHHHHHHHHHHHHH
Q 023492 156 DDWMDPVGAIILALYTIR 173 (281)
Q Consensus 156 ~~~~D~i~s~~i~~~i~~ 173 (281)
+.++||+.+++++..-.+
T Consensus 4 sr~lDP~~av~iG~~ayy 21 (47)
T PF11654_consen 4 SRFLDPLFAVFIGTSAYY 21 (47)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 468999999988875444
No 130
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=30.83 E-value=3.3e+02 Score=23.01 Aligned_cols=66 Identities=11% Similarity=0.011 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEec--CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTFG--SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~g--~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
..+.+.+.+.+ .+ ..+.+++....+ .+..+++++..+..- ++..+++-.++...|++.++.=++++
T Consensus 157 vr~~L~~~l~~--~~-~~~~~l~~~~~~~~~~~ei~a~l~~~~~~-----~~~le~iv~~L~~~pgV~~v~W~~~~ 224 (225)
T PRK15385 157 VRQWLLNIVKE--AA-ICLQGLGSVPAQEQGYKEIRAELVGHADY-----RKTRELIISRIGDNDNITAIHWSIDS 224 (225)
T ss_pred HHHHHHHHHHh--CC-CceEEeEeeecCCCCeEEEEEEEEecCCc-----hhhHHHHHHHHhCCCCeEEEEEEecC
Confidence 35555555543 33 457788887654 346666666665431 33556666778778999988776554
No 131
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=30.77 E-value=4.1e+02 Score=24.15 Aligned_cols=70 Identities=11% Similarity=0.048 Sum_probs=39.6
Q ss_pred HHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCC----HHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023492 197 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMP----LQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 197 ~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~----~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
.+|++.+.+ .|+|..-..+.....|..-.+.+.++++++.. .++...+.++|++.+++..+.. ..|++.+
T Consensus 331 ~eie~~l~~-~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~v~~~~ 404 (422)
T TIGR02155 331 TQLEEVILK-MDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVS-MDVHLVE 404 (422)
T ss_pred HHHHHHHHh-CcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhccCcE-EEEEEEC
Confidence 577777776 68876444555545553334556666654321 2334455677777776543443 4566654
No 132
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=30.68 E-value=1.4e+02 Score=31.40 Aligned_cols=44 Identities=7% Similarity=0.111 Sum_probs=37.5
Q ss_pred eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEee
Q 023492 224 HYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLD 267 (281)
Q Consensus 224 ~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~ie 267 (281)
.-.+.++++.+++.++++.++..+++++.+++.|++.+++..+.
T Consensus 567 ~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~~~~v~~~~~~~G 610 (1040)
T PRK10503 567 NGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVG 610 (1040)
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHHHHHHHhhCCCeEEEEEEec
Confidence 45678899999999999999999999999987788877766554
No 133
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=29.67 E-value=1.6e+02 Score=20.96 Aligned_cols=28 Identities=18% Similarity=0.496 Sum_probs=22.2
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 023492 225 YFVEVDIVLPASMPLQEAHDIGESLQEK 252 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~~ 252 (281)
+.|++++.+|++++.++.++++.+=++.
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~a~E~~~ 30 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLKAREKAR 30 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999888777654444
No 134
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=29.35 E-value=2.4e+02 Score=20.97 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 023492 67 ASVMATLGLQIILESLRTLVSNEDQFNLTKEQEQWVVGIMLSVTLVKLLLVVYC 120 (281)
Q Consensus 67 ~~~ll~~~~~~~~esi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (281)
++.+.++|+.+++-++ ++.+.+ ......+++++++.+....+|+|.
T Consensus 15 al~lif~g~~vmy~gi--~f~~~~------~im~ifmllG~L~~l~S~~VYfwI 60 (114)
T PF11023_consen 15 ALSLIFIGMIVMYIGI--FFKASP------IIMVIFMLLGLLAILASTAVYFWI 60 (114)
T ss_pred HHHHHHHHHHHHhhhh--hhcccH------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555432 333332 122333444445555555555543
No 135
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=29.33 E-value=3.8e+02 Score=28.24 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHH-HHHHHHHHHHHHhcCC
Q 023492 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQE-AHDIGESLQEKLELLP 257 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~-~~~i~~~i~~~l~~~~ 257 (281)
.++++.+++.+-+++.+.++.++++++.... .-...+.++++++.+.++ ..++++++.+.-.+.|
T Consensus 57 s~~~ve~~vt~piE~~l~~v~gv~~v~S~s~--~g~s~i~v~f~~~~d~~~a~~~v~~~v~~~~~~LP 122 (1051)
T TIGR00914 57 SPLEVEQRVTYPIETAMAGLPGLETTRSLSR--YGLSQVTVIFKDGTDLYFARQLVNERLQQARDNLP 122 (1051)
T ss_pred CHHHHHHHcCHHHHHHhcCCCCeeEEEEEcc--CceEEEEEEEeCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 3455555555555554455555556554432 223444555555554443 2455555544323455
No 136
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=29.33 E-value=1.4e+02 Score=21.24 Aligned_cols=68 Identities=18% Similarity=0.051 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHhhcCCCc-ceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccC
Q 023492 192 APEYLQKLTYLCWNHHKSI-RHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 270 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v-~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~ 270 (281)
+....+.+++++.+ |-. .++.+ -.-+=+++.-.+++++.|.+++.+.+++.+.+..++. .-..++|..
T Consensus 13 ~~r~~~Av~~Al~s--pLl~~~i~~--------A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii-~G~~id~~l 81 (95)
T PF12327_consen 13 ENRAEEAVEQALNS--PLLDVDIKG--------AKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANII-WGASIDEEL 81 (95)
T ss_dssp TTHHHHHHHHHHTS--TTSTS-GGG---------SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEE-EEEEE-TTG
T ss_pred ccHHHHHHHHHHhC--ccccCChHH--------hceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEE-EEEEECCCC
Confidence 44567788888864 432 22221 2345567778888999999999999999996433332 223345543
No 137
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=29.31 E-value=2e+02 Score=19.93 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=32.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCC
Q 023492 229 VDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYT 271 (281)
Q Consensus 229 ~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~~ 271 (281)
+-+.++++.+.++.+++.+.+++.-.+.|++..+++...-..+
T Consensus 5 vlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~ 47 (97)
T PF07876_consen 5 VLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPE 47 (97)
T ss_dssp EEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTS
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcc
Confidence 3456788899999989888888766788999877765554443
No 138
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.23 E-value=60 Score=21.69 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=0.0
Q ss_pred CCCCCcccccCC
Q 023492 270 YTHRPEHAQAHY 281 (281)
Q Consensus 270 ~~~~~~~~~~~~ 281 (281)
.....+.+|+||
T Consensus 58 ~~~~~~~~PPHY 69 (69)
T PF04102_consen 58 ADPPEEEPPPHY 69 (69)
T ss_dssp ------------
T ss_pred CCCCCCCCcCCC
Confidence 345677889999
No 139
>PRK14128 iraD DNA replication/recombination/repair protein; Provisional
Probab=28.98 E-value=1.3e+02 Score=20.16 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhcC-CCceeEEEEeeccC
Q 023492 240 QEAHDIGESLQEKLELL-PEIERAFVHLDYEY 270 (281)
Q Consensus 240 ~~~~~i~~~i~~~l~~~-~~i~~v~i~iep~~ 270 (281)
++-..+.+.|++.|.++ |.+..+.|++.+..
T Consensus 7 ~~r~~i~~~I~~aI~~fEPRL~~v~V~~~~~~ 38 (69)
T PRK14128 7 RLQSWYCRQLRSALLFHEPRIAALQVNLKEAY 38 (69)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEEecCC
Confidence 45678899999999874 88888888887544
No 140
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=28.91 E-value=1.9e+02 Score=19.76 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=32.1
Q ss_pred HHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023492 197 QKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 197 ~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
+.+++.+.+ . |..++.++|+ |+.+.+++ +.+ +.+.+.+..+.+.+.+-..|-+++..+.++|
T Consensus 19 ~ai~~~l~~-l-g~~~v~~Vr~---~k~~~l~~----~~~-~~~~a~~~v~~i~~~lL~Npvie~~~i~~~~ 80 (80)
T PRK05974 19 QAIKGALGS-L-GYDGVEDVRQ---GKYFELEL----EGE-SEEKAEADLKEMCEKLLANPVIEDYRIEIEE 80 (80)
T ss_pred HHHHHHHHH-c-CCCCcceEEE---EEEEEEEE----cCC-chhhhHHHHHHHHHHhcCCceeeEEEEEEeC
Confidence 455566654 2 4333444443 44444433 221 2233344466666656544788888877764
No 141
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=28.76 E-value=3.3e+02 Score=22.31 Aligned_cols=73 Identities=14% Similarity=-0.021 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEE--------EEecCeEEEEEEEEcCCCCCHH-HHHHHHHHHHHHHhcCCCceeEEEE
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRA--------YTFGSHYFVEVDIVLPASMPLQ-EAHDIGESLQEKLELLPEIERAFVH 265 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~--------~~~g~~~~v~~~i~v~~~~~~~-~~~~i~~~i~~~l~~~~~i~~v~i~ 265 (281)
...++.+.++. ++||++. ++|+ ++..+.-.+.+.+.+.++.+.. +...|++-+...+.+. ...+|||.
T Consensus 108 le~EL~rtI~~-i~~V~~A-rVhl~~P~~~~f~~~~~~~sASV~l~~~~g~~l~~qv~~I~~LVa~SV~~L-~~enVtVv 184 (193)
T TIGR02544 108 IEQRLEQTLSQ-IDGVISA-RVHVVLPENDNNGRPKKPSSASVFIKYRPGLNLDALIPKIKRLVANSIPGL-DYDNVSVV 184 (193)
T ss_pred HHHHHHHHHHh-cCCeeee-EEEEECCCCCcccccCCCCcEEEEEEeCCCCCcHHHHHHHHHHHHHhcCCC-CccceEEE
Confidence 45667788876 7887643 2222 1222335778888888776654 4555555555555443 22378887
Q ss_pred eeccC
Q 023492 266 LDYEY 270 (281)
Q Consensus 266 iep~~ 270 (281)
..|..
T Consensus 185 ~~~~~ 189 (193)
T TIGR02544 185 LVPAE 189 (193)
T ss_pred Eeccc
Confidence 77754
No 142
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=28.29 E-value=3.1e+02 Score=28.81 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=23.5
Q ss_pred CCCHHHHHH-HHHHHHHHHhcCCCceeEEEE
Q 023492 236 SMPLQEAHD-IGESLQEKLELLPEIERAFVH 265 (281)
Q Consensus 236 ~~~~~~~~~-i~~~i~~~l~~~~~i~~v~i~ 265 (281)
..+..+..+ ..++++..|++.+|+.+|.+.
T Consensus 148 ~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~ 178 (1037)
T PRK10555 148 SMDKQDIADYVASNIQDPLSRVNGVGDIDAY 178 (1037)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCeEEEEEc
Confidence 467777777 568899999999999987653
No 143
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=28.03 E-value=3.1e+02 Score=21.79 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEE
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 264 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i 264 (281)
.|..+.+|...+.. .| .++..+.+-..+..-...+.+.++.+ ++..+++.+.|+|..++.+|.-
T Consensus 12 ~pGvL~rI~~lf~r--rg-~NI~Sl~v~~te~~~~sriti~V~~~------~~~i~qi~kQl~KLidV~~V~~ 75 (161)
T PRK11895 12 EPGVLSRVAGLFSR--RG-YNIESLTVGPTEDPGLSRMTIVTSGD------EQVIEQITKQLNKLIDVLKVVD 75 (161)
T ss_pred CCcHHHHHHHHHHh--CC-CcEEEEEeeecCCCCEEEEEEEEECC------HHHHHHHHHHHhccccEEEEEe
Confidence 45788999998875 45 44556655554422223344454432 3455667777877777766643
No 144
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=27.98 E-value=3.4e+02 Score=28.63 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=28.4
Q ss_pred EecCeEEEEEEEEcC-CCCCHHHHHH-HHHHHHHHHhcCCCceeEEE
Q 023492 220 TFGSHYFVEVDIVLP-ASMPLQEAHD-IGESLQEKLELLPEIERAFV 264 (281)
Q Consensus 220 ~~g~~~~v~~~i~v~-~~~~~~~~~~-i~~~i~~~l~~~~~i~~v~i 264 (281)
..+......+.+.-+ +..+.++..+ ..++++..|++.||+.+|.+
T Consensus 131 ~~~~~~~~~i~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~ 177 (1044)
T TIGR00915 131 KASSNFLMVIGLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQL 177 (1044)
T ss_pred CCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEe
Confidence 333333334444333 2356677766 44679999999999998765
No 145
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=27.67 E-value=3.6e+02 Score=22.44 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhCCCCCHH-HHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc
Q 023492 177 MTVLENVNSLVGRSAAPE-YLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 255 (281)
Q Consensus 177 ~~~~~~~~~Ll~~~~~~~-~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~ 255 (281)
.+..+++..+++.-.+.+ ..+.+++.+.. +. +...+.+|| ++.+.+.+++++.. +..
T Consensus 97 ~LVl~~Vr~ILg~fd~~ell~r~vr~Al~~-~~--------------~~~~v~l~V------~P~~vd~l~~~la~-~~~ 154 (207)
T PF06635_consen 97 ELVLEIVRKILGEFDPDELLVRAVRQALSQ-IR--------------QGAEVTLRV------APADVDMLRRELAA-LEG 154 (207)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHH-Hh--------------cCCeEEEEE------CHHHHHHHHHHHHh-hhc
Confidence 456677778887643434 45556677754 11 112233443 33567888888844 465
Q ss_pred CCCceeEEEEeeccCCCCCc
Q 023492 256 LPEIERAFVHLDYEYTHRPE 275 (281)
Q Consensus 256 ~~~i~~v~i~iep~~~~~~~ 275 (281)
.++...+.|..||......|
T Consensus 155 ~~g~~~i~I~aDp~La~~~C 174 (207)
T PF06635_consen 155 RPGRPKIRIVADPRLAAGQC 174 (207)
T ss_pred cCCCCceeeecCCCCCCCCe
Confidence 56777888888888765554
No 146
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=27.62 E-value=2.1e+02 Score=19.63 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeE
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERA 262 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v 262 (281)
.|+.++++...... .| ..+..+.+-.....-.-.+.+.+.++ ++..+++.+.|+|...+.+|
T Consensus 12 ~pGVL~Ri~~lf~r--Rg-fNI~Sl~vg~te~~~~sriti~~~~~------~~~i~qi~kQL~KLidV~~V 73 (76)
T PRK06737 12 DPSVLLRISGIFAR--RG-YYISSLNLNERDTSGVSEMKLTAVCT------ENEATLLVSQLKKLINVLQV 73 (76)
T ss_pred CCCHHHHHHHHHhc--cC-cceEEEEecccCCCCeeEEEEEEECC------HHHHHHHHHHHhCCcCEEEE
Confidence 56788899888854 55 44556665444333334444544332 23455667777777776655
No 147
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=27.58 E-value=1.8e+02 Score=19.01 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc
Q 023492 198 KLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 255 (281)
Q Consensus 198 ~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~ 255 (281)
+|++.+.+ .|+|.++-=+-...-...-.+-+.+.. +..++++.+++.|..
T Consensus 1 EIE~~l~~-~~~V~~~~V~~~~d~~~g~~l~a~vv~-------~~~~i~~~~~~~l~~ 50 (73)
T PF13193_consen 1 EIESVLRQ-HPGVAEAAVVGVPDEDWGERLVAFVVL-------DEEEIRDHLRDKLPP 50 (73)
T ss_dssp HHHHHHHT-STTEEEEEEEEEEETTTEEEEEEEEEE-------HHHHHHHHHHHHS-G
T ss_pred CHHHHHhc-CCCccEEEEEEEEcccccccceeEEEe-------eecccccchhhhCCC
Confidence 46777876 799876654444433233334444443 338888899888854
No 148
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.49 E-value=2.6e+02 Score=20.81 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=22.7
Q ss_pred hhHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 023492 5 AAKVYASVKSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPN 47 (281)
Q Consensus 5 i~~~~~~~~~~S~al~ada~~~~~d~~~~~~~l~~~~~~~~~~ 47 (281)
++.++.|++-|+..|..--.--++-.+++.+...-...-.+.+
T Consensus 51 Vi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~VD 93 (129)
T KOG3415|consen 51 VIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLKVD 93 (129)
T ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 3455666666666666555555555555554444433334433
No 149
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.42 E-value=1.7e+02 Score=18.68 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHh
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE 254 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~ 254 (281)
.+....++.+.+.+ .+ .++.+.++...+....-.+++.-+.+.+.. .+..+++++.|+
T Consensus 10 ~~gll~~i~~~l~~--~~-~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~--~~~~~~i~~~l~ 67 (70)
T cd04899 10 RPGLLADVTRVLAE--LG-LNIHSAKIATLGERAEDVFYVTDADGQPLD--PERQEALRAALG 67 (70)
T ss_pred CccHHHHHHHHHHH--CC-CeEEEEEEEecCCEEEEEEEEECCCCCcCC--HHHHHHHHHHHH
Confidence 34678889998876 34 457788887766544445555544433311 234455666664
No 150
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=27.33 E-value=38 Score=21.79 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=21.7
Q ss_pred hhCCCCCHHHHHHHHHHHhhcCCCcceeee
Q 023492 186 LVGRSAAPEYLQKLTYLCWNHHKSIRHIDT 215 (281)
Q Consensus 186 Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~ 215 (281)
|.|..+.++..+++.+.+.+ ++|+.++.|
T Consensus 30 L~G~v~s~~~~~~a~~~a~~-v~gv~~V~n 58 (64)
T PF04972_consen 30 LSGEVPSQEQRDAAERLARS-VAGVREVVN 58 (64)
T ss_dssp EEEEESSCHHHHHHHHHHHC-C-STSEEEE
T ss_pred EEeeCcHHHHHHhHHhhhcc-CCCcCEEEE
Confidence 34555677889999999986 899988874
No 151
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=27.18 E-value=91 Score=21.68 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=29.5
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCce--eEEEEeeccCCCCC
Q 023492 225 YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE--RAFVHLDYEYTHRP 274 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~--~v~i~iep~~~~~~ 274 (281)
-++-++|...+.-|.++=.++-+.+.+.|++.+|+. ++.|.+.....+++
T Consensus 28 ~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~gi~p~Dv~I~l~e~~~edW 79 (82)
T PF14552_consen 28 DFVIIQITSGAGRSTEQKKALYRALAERLAEKLGIRPEDVMIVLVENPREDW 79 (82)
T ss_dssp T-EEEEEEECS---HHHHHHHHHHHHHHHHHHH---GGGEEEEEEEE-GGGE
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEECCcccC
Confidence 456677777766677776777788888886534443 78887776665554
No 152
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=27.08 E-value=3e+02 Score=21.30 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcCCCcceeeeEEEEEecCe-EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023492 194 EYLQKLTYLCWNHHKSIRHIDTVRAYTFGSH-YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 194 ~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~-~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
+..+++.+.+.+ .|+|..++... |+. +.+.+ ..+ +.++ +.+-+.+.+.+.|+|.++..++.-
T Consensus 81 ~~~~~~~~~l~~-~p~V~~~~~~t----G~~dl~~~v--~~~---d~~~---l~~~~~~~l~~~~gV~~~~t~ivl 143 (153)
T PRK11179 81 KDYPSALAKLES-LDEVVEAYYTT----GHYSIFIKV--MCR---SIDA---LQHVLINKIQTIDEIQSTETLISL 143 (153)
T ss_pred ccHHHHHHHHhC-CCCEEEEEEcc----cCCCEEEEE--EEC---CHHH---HHHHHHHHhhcCCCeeeEEEEEEE
Confidence 345667777766 79977665432 432 44444 444 4343 444455677778899866555443
No 153
>PRK09881 D-ala-D-ala transporter subunit; Provisional
Probab=26.60 E-value=4.4e+02 Score=23.08 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=7.4
Q ss_pred CCCCCCCCccc
Q 023492 46 PNPYQYPIGKK 56 (281)
Q Consensus 46 ~~~~~~p~G~~ 56 (281)
||+.+||+|-.
T Consensus 69 ~Ps~~h~lGTD 79 (296)
T PRK09881 69 PPSAAHWFGTD 79 (296)
T ss_pred CCCCCCCCCCC
Confidence 45567888864
No 154
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.46 E-value=1.9e+02 Score=18.96 Aligned_cols=55 Identities=9% Similarity=0.153 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEE--EecCeEEEEEEEEcCCC-CCHHHHHHHHHHH
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAY--TFGSHYFVEVDIVLPAS-MPLQEAHDIGESL 249 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~--~~g~~~~v~~~i~v~~~-~~~~~~~~i~~~i 249 (281)
.|....+|.+.+.+ .| ..+.+++.. ..+......+.+..|+. .+.++..+-.+.+
T Consensus 9 ~~Giv~~it~~l~~--~g-~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 9 RPGIVAAVSGFLAE--HG-GNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred CCCHHHHHHHHHHH--cC-CCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45789999999976 34 335555555 34445777777777764 5555433333333
No 155
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.41 E-value=2e+02 Score=19.10 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCC-CC---CHHHHHHHHHHHHHHH
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPA-SM---PLQEAHDIGESLQEKL 253 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~-~~---~~~~~~~i~~~i~~~l 253 (281)
.|....++.+.+.+ .| .++++.|+...|....-.+++.-++ +. +.++..++++.+++.+
T Consensus 10 r~gLl~~i~~~l~~--~~-lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 10 RPGLLSEVFAVLAD--LH-CNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred CCCHHHHHHHHHHH--CC-CcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 45788999999975 44 5688889888866655555554322 22 3344555555555544
No 156
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=26.16 E-value=1.3e+02 Score=18.95 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=29.1
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHHhcC--CCceeEEEEeeccCCCCCccc
Q 023492 230 DIVLPASMPLQEAHDIGESLQEKLELL--PEIERAFVHLDYEYTHRPEHA 277 (281)
Q Consensus 230 ~i~v~~~~~~~~~~~i~~~i~~~l~~~--~~i~~v~i~iep~~~~~~~~~ 277 (281)
+|.+.++.+.++-.++.+.+.+.+.+. ..-..+++.++....++....
T Consensus 4 ~i~~~~g~~~e~K~~l~~~it~~~~~~lg~~~~~i~V~i~E~~~~~w~~g 53 (60)
T PF01361_consen 4 TIKIPEGRTAEQKRELAEAITDAVVEVLGIPPERISVVIEEVPPENWGIG 53 (60)
T ss_dssp EEEEESTS-HHHHHHHHHHHHHHHHHHHTS-GGGEEEEEEEE-CCCEEET
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHhCcCCCeEEEEEEEEChhheEEC
Confidence 444445558788888888888887542 233467777777766665544
No 157
>PRK09577 multidrug efflux protein; Reviewed
Probab=26.07 E-value=1.8e+02 Score=30.53 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=34.8
Q ss_pred eEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEE
Q 023492 224 HYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 264 (281)
Q Consensus 224 ~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i 264 (281)
.-.+.++++.|++.++++.++..+++++.+++.|++.++..
T Consensus 566 ~~~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~~~~v~~~~~ 606 (1032)
T PRK09577 566 QGNFMVMVIRPQGTPLAETMQSVREVESYLRRHEPVAYTFA 606 (1032)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 35678899999999999999999999999987777766643
No 158
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=26.06 E-value=35 Score=23.74 Aligned_cols=61 Identities=11% Similarity=0.248 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEE--EecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCce
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAY--TFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIE 260 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~--~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~ 260 (281)
.++..+.|.+++.++.|++. -..+..+ +-|+...+.+.+.+. +.++ .+.+-+.|++.+++.
T Consensus 20 ~~~~~~~v~~iv~~~~~~~~-~~~~~~k~S~~GkY~Svtv~v~v~---s~eq----~~~iy~~L~~~~~Vk 82 (85)
T PF04359_consen 20 EEDFVEAVKEIVEKHAPEFD-DEKVSSKPSSKGKYVSVTVSVTVE---SAEQ----VDAIYRELKAHPGVK 82 (85)
T ss_dssp STTHHHHHCCCCCCHSS--S-SEEEEECCSTTSSEEEEEEEEEES---SHHH----HHHHHHHHTTSSSEE
T ss_pred cHhHHHHHHHHHHHhCCcCc-cCceEEecCCCCeEEEEEEEEEEC---CHHH----HHHHHHHhccCCCEE
Confidence 45577778777766555442 2233333 335556677777776 4444 345566677667764
No 159
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=25.91 E-value=2.5e+02 Score=19.95 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHhhcCCCcceeeeEEEEEe--cCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 023492 191 AAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI 259 (281)
Q Consensus 191 ~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~--g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i 259 (281)
..|+..+++-+.+..+-||-. ...+-.+.. |+..-+++.|... +.++.+.+- +.|.+.+.+
T Consensus 24 a~~~l~~~vv~vvqr~ap~~~-~~~~~~k~SSkGnY~svsI~i~A~---~~EQ~e~ly----~eL~~~~~V 86 (90)
T COG2921 24 AGPELEDQVVEVVQRHAPGDY-TPRVSWKPSSKGNYLSVSITIRAT---NIEQVEALY----RELRKHEIV 86 (90)
T ss_pred cchhHHHHHHHHHHHHCCccc-CceeeeccCCCCceEEEEEEEEEC---CHHHHHHHH----HHHhhCCce
Confidence 467788888888877666622 334422333 3334555555554 566665554 444444444
No 160
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=25.78 E-value=4e+02 Score=27.99 Aligned_cols=68 Identities=7% Similarity=0.023 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCCCcceeeeEEEEEe--cCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEE
Q 023492 195 YLQKLTYLCWNHHKSIRHIDTVRAYTF--GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVH 265 (281)
Q Consensus 195 ~~~~i~~~i~~~~~~v~~i~~~~~~~~--g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~ 265 (281)
..++|.+.-.+ .|.- +..-.+.+. +......+.+.=+.+-..+..+...+.+++.|++.+|+.++.+.
T Consensus 107 V~~kv~~~~~~-LP~~--~~~p~v~~~~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~ 176 (1009)
T COG0841 107 VQNKIQQAESR-LPSG--VQQPGVTVEKSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLF 176 (1009)
T ss_pred HHHHHHHHHhc-CCCc--cCCCceEeccCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 44455544443 5543 333333333 44455555555544434566777778899999999999888664
No 161
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=25.74 E-value=1.6e+02 Score=21.84 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.0
Q ss_pred CCcceeeeEEEEEecCeEEEEEEEEcCC
Q 023492 208 KSIRHIDTVRAYTFGSHYFVEVDIVLPA 235 (281)
Q Consensus 208 ~~v~~i~~~~~~~~g~~~~v~~~i~v~~ 235 (281)
.|-..+.+.++++.|..+.+++++.+++
T Consensus 27 ~g~i~v~~~~~~~~gd~L~V~m~idl~~ 54 (115)
T PF12984_consen 27 TGQIKVTNVSVEKQGDSLHVDMDIDLSG 54 (115)
T ss_pred CCcEEEEeeEEEEECCEEEEEEEEEecc
Confidence 5556788999999999999999998864
No 162
>TIGR01008 rpsC_E_A ribosomal protein S3, eukaryotic/archaeal type. This model describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea. TIGRFAMs model TIGR01009 describes the bacterial/organellar type, although the organellar types have a different architecture with long insertions and may score poorly.
Probab=25.54 E-value=2.1e+02 Score=23.53 Aligned_cols=57 Identities=12% Similarity=-0.000 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCC---CHHHHHHHHHHHHHHH
Q 023492 196 LQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASM---PLQEAHDIGESLQEKL 253 (281)
Q Consensus 196 ~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~---~~~~~~~i~~~i~~~l 253 (281)
..++++.+...+.. ..+.++.+.+......+.+|..-|.-+ .-.+.+++.+.+++.+
T Consensus 12 ~~~ire~l~k~~~~-agis~ieI~r~~~~~~I~I~~~rPg~vIG~~g~~i~~l~~~l~k~~ 71 (195)
T TIGR01008 12 RTLIDEFLKKELRE-AGYSGVDVRVTPLGTKVIIFAERPGLVIGRGGRRIRELTEKLQKKF 71 (195)
T ss_pred HHHHHHHHHHHHHh-CCeeEEEEEEcCCcEEEEEEECCCceEECCCchHHHHHHHHHHHHh
Confidence 44555555443222 357788888877778888888776543 2334556666665554
No 163
>PF10646 Germane: Sporulation and spore germination; InterPro: IPR019606 The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. It is also found in lipoprotein LpqB. The domain is present in a number of different bacterial species both alone and in association with other domains such as Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.
Probab=25.06 E-value=2.5e+02 Score=20.20 Aligned_cols=46 Identities=9% Similarity=0.088 Sum_probs=30.3
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHh-cCCCceeEEEEeeccC
Q 023492 225 YFVEVDIVLPASMPLQEAHDIGESLQEKLE-LLPEIERAFVHLDYEY 270 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~-~~~~i~~v~i~iep~~ 270 (281)
..+++.=.+.......+...+.+.|...+. .++++.+|.+.++=..
T Consensus 66 ~~Vd~s~~~~~~~~~~~~~~~~~~i~~Tl~~~~~~v~~V~i~vdG~~ 112 (117)
T PF10646_consen 66 LTVDFSSEFLNFLGSSQEALLLAQIVNTLTEQFPGVKKVQILVDGKP 112 (117)
T ss_pred EEEECCHHHhhcCChHHHHHHHHHHHHHHHHhcCCccEEEEEECCEE
Confidence 444433333322345556778888989897 7888999999887543
No 164
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=24.71 E-value=3.5e+02 Score=21.35 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEE
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 264 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i 264 (281)
.|..+.+|...+.+ .| .++..+.+-..+..-...+.+.++.+ ++..+++.+.|++..++.+|.-
T Consensus 11 ~pGvL~rI~~lf~r--rg-~NI~Sl~v~~t~~~~~sriti~V~~d------~~~i~qi~kQl~Kli~V~~V~~ 74 (157)
T TIGR00119 11 EPGVLSRVAGLFTR--RG-FNIESLTVGPTEDPDLSRMTIVVVGD------DKVLEQITKQLNKLVDVIKVSD 74 (157)
T ss_pred CCcHHHHHHHHHHh--CC-ceEEEEEEeecCCCCEEEEEEEEECC------HHHHHHHHHHHhcCccEEEEEe
Confidence 45788999998875 45 44666666555523233345555432 3456677788887777766643
No 165
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=24.65 E-value=3.9e+02 Score=21.87 Aligned_cols=69 Identities=9% Similarity=0.102 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHhhcC-CCcceee--eEEEEEecCeEEEEEEEEcCCCCC--HHHHHHHHHHHHHHHhc-CC-CceeEE
Q 023492 192 APEYLQKLTYLCWNHH-KSIRHID--TVRAYTFGSHYFVEVDIVLPASMP--LQEAHDIGESLQEKLEL-LP-EIERAF 263 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~-~~v~~i~--~~~~~~~g~~~~v~~~i~v~~~~~--~~~~~~i~~~i~~~l~~-~~-~i~~v~ 263 (281)
+++..++|++.+.+.+ |... -| |+.+.....+- .+++.+.+.+. ......+.+-|++.|++ .| .+.+|.
T Consensus 104 ~~~~~~~i~~~l~~~irP~l~-~dGGdielv~v~~~~--~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~ 179 (192)
T PRK11190 104 DAPLMERVEYVLQSQINPQLA-GHGGRVSLMEITEDG--YAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVR 179 (192)
T ss_pred cHHHHHHHHHHHHhccChhHH-hcCCcEEEEEEcCCC--EEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEE
Confidence 4457888888886323 3322 22 55555543221 24455544432 23346777789998964 67 676553
No 166
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.26 E-value=2.4e+02 Score=19.31 Aligned_cols=58 Identities=7% Similarity=0.043 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCC-CCCHHHHHHHHHHHHHHHhc
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPA-SMPLQEAHDIGESLQEKLEL 255 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~-~~~~~~~~~i~~~i~~~l~~ 255 (281)
.|....+|.+.+.+ .| .++.+++....+......+.+..++ +.+.+ ++.+.+++.-++
T Consensus 11 ~pGiva~vt~~la~--~g-~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~---~L~~~l~~l~~~ 69 (88)
T cd04872 11 RVGIVAGVSTKLAE--LN-VNILDISQTIMDGYFTMIMIVDISESNLDFA---ELQEELEELGKE 69 (88)
T ss_pred CCCHHHHHHHHHHH--cC-CCEEechhHhhCCccEEEEEEEeCCCCCCHH---HHHHHHHHHHHH
Confidence 46789999999976 33 2344554444566677777777775 45543 455666553333
No 167
>PF04219 DUF413: Protein of unknown function, DUF; InterPro: IPR007335 This is a family of uncharacterised proteins.
Probab=24.17 E-value=38 Score=24.27 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=10.1
Q ss_pred CCCCCCCccchh
Q 023492 47 NPYQYPIGKKRM 58 (281)
Q Consensus 47 ~~~~~p~G~~r~ 58 (281)
++++||+|+.|-
T Consensus 4 D~~~fPrGF~Rs 15 (93)
T PF04219_consen 4 DDKNFPRGFSRS 15 (93)
T ss_pred cCCCCCCccccC
Confidence 578999999994
No 168
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=23.94 E-value=4.9e+02 Score=22.70 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=12.1
Q ss_pred ccchhHHHHHHHHHHHHHHH
Q 023492 156 DDWMDPVGAIILALYTIRTW 175 (281)
Q Consensus 156 ~~~~D~i~s~~i~~~i~~~~ 175 (281)
+..+||.-+++.+++-....
T Consensus 119 GR~v~~~~ai~yt~~s~~~C 138 (314)
T COG3965 119 GREVEPGHAIAYTLVSVTGC 138 (314)
T ss_pred CccccccHHHHHHHHHHHHH
Confidence 46777777776665544433
No 169
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=23.86 E-value=2.3e+02 Score=18.79 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=27.6
Q ss_pred EEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHh
Q 023492 217 RAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLE 254 (281)
Q Consensus 217 ~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~ 254 (281)
.+|..|..-.+.++++.+ +.++++++.+++.+.|+
T Consensus 39 ~vR~SgTEP~iRv~~Ea~---~~~~~~~~~~~i~~~ik 73 (73)
T PF00408_consen 39 LVRPSGTEPKIRVYVEAP---DEEELEEIAEEIAEAIK 73 (73)
T ss_dssp EEEEESSSSEEEEEEEES---SHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCceEEEEEEeC---CHHHHHHHHHHHHHhhC
Confidence 467788887788888877 67788899998888764
No 170
>PRK10913 dipeptide transporter; Provisional
Probab=23.31 E-value=5.1e+02 Score=22.68 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=25.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023492 132 AQDHFFDVITNIIGLVAVLLANYI-DDWMDPVGAIILALYTIRTWSMTVLENVNSLV 187 (281)
Q Consensus 132 ~~~~~~D~~~s~~~v~~~~~~~~~-~~~~D~i~s~~i~~~i~~~~~~~~~~~~~~Ll 187 (281)
......|.+.+.=.++.+++.... .+. .....+++++.....-.+..|.......
T Consensus 133 ~l~~i~dv~~siP~~~l~lll~~~~g~~-~~~~ilal~l~~~p~~ar~~r~~~l~~~ 188 (300)
T PRK10913 133 IIMRVVDIMLALPSLLLALVLVAIFGPS-IVNAALALTFVALPHYVRLTRAAVLVEV 188 (300)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777764334444433322 221 1122333334444445566666655443
No 171
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.26 E-value=2.4e+02 Score=18.84 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHH
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKL 253 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l 253 (281)
-|.+..++...+.. .+ .+|++.++......+.++.....+++- ++...+.+.+++.+
T Consensus 11 r~gLFa~iag~L~~--~~-LnI~~A~i~tt~dG~~LDtF~V~d~~~--~~~~~~~~~~~~~~ 67 (68)
T cd04928 11 KPKLLSQLSSLLGD--LG-LNIAEAHAFSTDDGLALDIFVVTGWKR--GETAALGHALQKEI 67 (68)
T ss_pred CcchHHHHHHHHHH--CC-CceEEEEEEEcCCCeEEEEEEEecCCc--cchHHHHHHHHHhh
Confidence 34677888888865 44 668899998888888888888877653 45566666666654
No 172
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=23.08 E-value=3.1e+02 Score=25.26 Aligned_cols=62 Identities=6% Similarity=0.217 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCCcceeeeEEEEEecCe----EEEEEEEEcCCCCCHHHHHH-HHHHHHHHHhcCC
Q 023492 196 LQKLTYLCWNHHKSIRHIDTVRAYTFGSH----YFVEVDIVLPASMPLQEAHD-IGESLQEKLELLP 257 (281)
Q Consensus 196 ~~~i~~~i~~~~~~v~~i~~~~~~~~g~~----~~v~~~i~v~~~~~~~~~~~-i~~~i~~~l~~~~ 257 (281)
-.++.+.+.+.++||++++=.-+.+.|+- ..+++.+..+++.+.++..+ +.+-+.+.|.+.+
T Consensus 319 A~~iA~~i~~~v~gv~ev~V~llSqIG~PId~P~~a~v~v~~~~g~~~~~~~~~v~~I~~~~L~~i~ 385 (399)
T PRK04439 319 ANRIAREIYEEVEGVKEVYVRLLSQIGKPIDEPLVASIQVIPEDGVLISDVEKEVEEIVDEELANIT 385 (399)
T ss_pred HHHHHHHHHHhcCCceEEEEEEeccCCCcCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHhchH
Confidence 34455555445778777665555677753 67899998888766554333 3334444444433
No 173
>PRK02119 hypothetical protein; Provisional
Probab=23.04 E-value=1.8e+02 Score=19.74 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=7.6
Q ss_pred CCCcccccCC
Q 023492 272 HRPEHAQAHY 281 (281)
Q Consensus 272 ~~~~~~~~~~ 281 (281)
...+.+|+||
T Consensus 64 ~~~e~~PPHY 73 (73)
T PRK02119 64 QAEETPPPHY 73 (73)
T ss_pred CCCCCCcCCC
Confidence 3457789999
No 174
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.40 E-value=4.7e+02 Score=21.95 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=20.7
Q ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 023492 49 YQYPIGKKRMQPLGILVFASVMATLGLQI 77 (281)
Q Consensus 49 ~~~p~G~~r~e~l~~li~~~~ll~~~~~~ 77 (281)
.++..+..++|.+..++-+++++++++..
T Consensus 52 ~~~~~~~~~lE~~WtviP~iil~~l~~~s 80 (228)
T MTH00140 52 CRTILEAQKLETIWTIVPALILVFLALPS 80 (228)
T ss_pred CccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 45666788899888888777766665543
No 175
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.36 E-value=1.9e+02 Score=19.56 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=7.5
Q ss_pred CCCcccccCC
Q 023492 272 HRPEHAQAHY 281 (281)
Q Consensus 272 ~~~~~~~~~~ 281 (281)
...+.+|+||
T Consensus 63 ~~~e~~PPHY 72 (72)
T PRK02793 63 QAEETPPPHY 72 (72)
T ss_pred CCCCCCcCCC
Confidence 3457789999
No 176
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=22.32 E-value=1.4e+02 Score=26.23 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=31.7
Q ss_pred CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeeccC
Q 023492 223 SHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEY 270 (281)
Q Consensus 223 ~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep~~ 270 (281)
++.+.++.+.+|+.+..-| ..+++.+++.+++ |-.++++++++..
T Consensus 28 N~R~Ldi~~rlP~~l~~lE-~~ir~~i~~~l~R--GkV~v~i~~~~~~ 72 (291)
T TIGR00255 28 NQRFLEFKFRLPEQFRGLE-LDLRELIRQYITR--GKIECFLRVEYKE 72 (291)
T ss_pred ccCceeeeeeCCHHHHHHH-HHHHHHHHHhccC--ceEEEEEEEEEcC
Confidence 3467888999998776444 6677777777765 5557888877653
No 177
>PRK09098 type III secretion system protein HrpB; Validated
Probab=21.86 E-value=4.9e+02 Score=21.98 Aligned_cols=79 Identities=6% Similarity=-0.076 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcC
Q 023492 177 MTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELL 256 (281)
Q Consensus 177 ~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~ 256 (281)
.+...+...+++...|..+...+++.+.....+ -. . +.|.| ++++...+++...+.+...
T Consensus 117 ~lv~~~v~kiv~~~d~~~ll~~v~~al~~~~~~---~~-----------~--v~IrV----~P~D~~~v~~~~~~~~~~~ 176 (233)
T PRK09098 117 EIVAAAVEQIVLGEDRAALFARAAQTLERVVDG---AS-----------Y--LTVRV----HPADLDAARAAFGAAAAAG 176 (233)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc---CC-----------c--EEEEE----CHHHHHHHHHHHHHHHHhc
Confidence 444445555555444556667777777542111 11 1 12223 3445667777776666655
Q ss_pred CCceeEEEEeeccCCCCCc
Q 023492 257 PEIERAFVHLDYEYTHRPE 275 (281)
Q Consensus 257 ~~i~~v~i~iep~~~~~~~ 275 (281)
+....+.|..||.-....|
T Consensus 177 g~~~~l~Iv~Dp~L~~GgC 195 (233)
T PRK09098 177 GRNVPVEVVGDPRLAPGAC 195 (233)
T ss_pred CCCcceEEEeCCCCCCCCe
Confidence 5555677888887654433
No 178
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=21.56 E-value=6e+02 Score=22.89 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc
Q 023492 188 GRSAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 255 (281)
Q Consensus 188 ~~~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~ 255 (281)
|....++.+.++.+.+++..+. .+ .+-+.|.+-++ +.++ +.+.+++.++.+++++.+++
T Consensus 255 Gh~~GD~lL~~vA~~L~~~l~~----~d-~laRlggdeFa---vll~-~~~~~~a~~~~~rl~~~l~~ 313 (366)
T PRK10245 255 GHDVGDEAIVALTRQLQITLRG----SD-VIGRFGGDEFA---VIMS-GTPAESAITAMSRVHEGLNT 313 (366)
T ss_pred CchHHHHHHHHHHHHHHHhCCC----CC-EEEEEcCcEEE---EEeC-CCCHHHHHHHHHHHHHHHhh
Confidence 3344456777777777664333 23 34455554222 1222 34667788888888888865
No 179
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=21.29 E-value=2.6e+02 Score=18.61 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL 255 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~ 255 (281)
.|....++.+.+.+ .| -++.|.+....|......+.++.+++ ...++.+.+++.-++
T Consensus 12 rpGiv~~v~~~l~~--~g-~ni~d~~~~~~~~~f~~~~~v~~~~~----~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 12 RPGIVAAVTGVLAE--HG-CNIEDSRQAVLGGRFTLIMLVSIPED----SLERLESALEELAEE 68 (76)
T ss_dssp -TTHHHHHHHHHHC--TT--EEEEEEEEEETTEEEEEEEEEESHH----HHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH--CC-CcEEEEEEEEEcCeEEEEEEEEeCcc----cHHHHHHHHHHHHHH
Confidence 45688899999975 34 56789999999999888899988832 345666666555444
No 180
>PRK00736 hypothetical protein; Provisional
Probab=21.12 E-value=1.1e+02 Score=20.37 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=7.5
Q ss_pred CCCcccccCC
Q 023492 272 HRPEHAQAHY 281 (281)
Q Consensus 272 ~~~~~~~~~~ 281 (281)
...+.+|+||
T Consensus 59 ~~~~~~PPHY 68 (68)
T PRK00736 59 DVPVTKPPHW 68 (68)
T ss_pred CCCCCCcCCC
Confidence 3357789999
No 181
>cd00580 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.
Probab=21.10 E-value=3.4e+02 Score=19.79 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEE-------Eec----CeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhc-CCCc
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAY-------TFG----SHYFVEVDIVLPASMPLQEAHDIGESLQEKLEL-LPEI 259 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~-------~~g----~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~-~~~i 259 (281)
.+.+.+.+.+.+.+ . +...-.|++.+ ..| .+-++.++|.+-++-|.++-.++.+.+.+.+++ .+..
T Consensus 17 ~~~l~~~v~~al~~-~-~~~p~~dik~r~~~~~~y~~~~~~~~~~fi~i~i~l~~GRs~eqK~~l~~~i~~~l~~~~~~~ 94 (113)
T cd00580 17 IPELLRALHDALVA-S-GLFPLGGIKVRAIRADHYRVGDGDEDDAFIHVTLRILAGRSEEQKQELSEALLAALRAHLAPV 94 (113)
T ss_pred HHHHHHHHHHHHHh-c-CCCChhccEEeeEEcceEEECCCCCCCcEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 44677778888766 2 22223344332 222 236777788776677888888888888888864 3333
Q ss_pred -----eeEEEEeecc
Q 023492 260 -----ERAFVHLDYE 269 (281)
Q Consensus 260 -----~~v~i~iep~ 269 (281)
..+++++..-
T Consensus 95 ~~~~~~~~svei~e~ 109 (113)
T cd00580 95 FAKRYLSLSVEIREL 109 (113)
T ss_pred hhccceEEEEEEEec
Confidence 2566666543
No 182
>PRK00194 hypothetical protein; Validated
Probab=21.07 E-value=2.9e+02 Score=18.94 Aligned_cols=54 Identities=7% Similarity=0.091 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHhhcCCCcceeeeEEEEEecCeEEEEEEEEcCC-CCCHHHHHHHHHHHHH
Q 023492 192 APEYLQKLTYLCWNHHKSIRHIDTVRAYTFGSHYFVEVDIVLPA-SMPLQEAHDIGESLQE 251 (281)
Q Consensus 192 ~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~g~~~~v~~~i~v~~-~~~~~~~~~i~~~i~~ 251 (281)
.|....++.+.+.+ .| .++.+++....+...+..+.+.+++ +.+. .++.+++++
T Consensus 13 rpGiva~vt~~la~--~g-~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~l~~ 67 (90)
T PRK00194 13 KVGIIAGVSTVLAE--LN-VNILDISQTIMDGYFTMIMLVDISESKKDF---AELKEELEE 67 (90)
T ss_pred CCCHHHHHHHHHHH--cC-CCEEehhhHhhCCeeEEEEEEEecCCCCCH---HHHHHHHHH
Confidence 46789999999976 34 2344554444555566666666664 3333 345555554
No 183
>PF04965 GPW_gp25: Gene 25-like lysozyme; InterPro: IPR007048 The family of sequences represented by this entry include proteins from Bacteriophage T4 and related phage, which may be structural components of the outer wedge of the baseplate that has acidic lysozyme activity [, ]. They also include anti-adapter protein IraD, from bacteria, that inhibit RpoS proteolysis by regulating RssB activity [].; PDB: 2IA7_A.
Probab=20.96 E-value=2e+02 Score=20.21 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHHHhc-CCCceeEEEEeeccC
Q 023492 238 PLQEAHDIGESLQEKLEL-LPEIERAFVHLDYEY 270 (281)
Q Consensus 238 ~~~~~~~i~~~i~~~l~~-~~~i~~v~i~iep~~ 270 (281)
+......+..+|++.|.+ -|.+..+.|++++..
T Consensus 42 ~~~~~~~i~~~I~~aI~~~EPRl~~~~V~~~~~~ 75 (99)
T PF04965_consen 42 SPDTRQAIRREIREAIQRFEPRLKVVSVEVEEDD 75 (99)
T ss_dssp -HHHHHHHHHHHHHHHHHH-TTEEEEEEEEE-TT
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecC
Confidence 566788999999999987 489998888888865
No 184
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.78 E-value=4.8e+02 Score=21.39 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 023492 62 GILVFASVMATLGLQIILESLRTLVSNED 90 (281)
Q Consensus 62 ~~li~~~~ll~~~~~~~~esi~~l~~~~~ 90 (281)
.....-..+++.+++.+..++..++++..
T Consensus 79 ~~~~ld~~L~~~~if~~~~gi~~~f~~~~ 107 (206)
T PF06570_consen 79 WLMALDNSLLFFGIFSLLFGIMGFFSPKN 107 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444444555667777788888888754
No 185
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=20.70 E-value=3e+02 Score=21.60 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=28.8
Q ss_pred HHHHHHhhCC-CCCHHHHHHHHHHHhhcCCCcceeeeEEEEEe
Q 023492 180 LENVNSLVGR-SAAPEYLQKLTYLCWNHHKSIRHIDTVRAYTF 221 (281)
Q Consensus 180 ~~~~~~Ll~~-~~~~~~~~~i~~~i~~~~~~v~~i~~~~~~~~ 221 (281)
.+++..+++. ..+++..+++++.+.. .|-.++.|+..-..
T Consensus 112 ~~ai~~iL~~p~V~~~~K~~i~~i~~~--Kgei~FYDVy~la~ 152 (155)
T PF10777_consen 112 DQAIDKILQSPQVPDEIKQGIQRIIST--KGEISFYDVYSLAY 152 (155)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh--CCceeEEEeEEeec
Confidence 4566677764 3478899999999975 77777888765443
No 186
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=20.53 E-value=1.8e+02 Score=25.65 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=20.5
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEE
Q 023492 225 YFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFV 264 (281)
Q Consensus 225 ~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i 264 (281)
..++++++.+.+ ++.++.+++.+++.|++..+++
T Consensus 59 v~i~vyL~~~~~------~~~~~~v~~~i~~~~gV~~v~~ 92 (297)
T COG2177 59 VEITVYLQIDAD------QDDAALVREKIEGIPGVKSVRF 92 (297)
T ss_pred ceEEEEEecCCC------hHHHHHHHHHHhcCCCcceEEE
Confidence 344555555544 2333447888888888877765
No 187
>PRK10568 periplasmic protein; Provisional
Probab=20.52 E-value=2.8e+02 Score=22.85 Aligned_cols=73 Identities=7% Similarity=0.020 Sum_probs=41.3
Q ss_pred HhhCCCCCHHHHHHHHHHHhhcCCCcceeee-EEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCC--Ccee
Q 023492 185 SLVGRSAAPEYLQKLTYLCWNHHKSIRHIDT-VRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLP--EIER 261 (281)
Q Consensus 185 ~Ll~~~~~~~~~~~i~~~i~~~~~~v~~i~~-~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~--~i~~ 261 (281)
.|+|..+.++..++..+.+++ ++||+++.+ +++..-... .+. ...+-..+..+++..|.+.+ .-.+
T Consensus 90 ~L~G~V~s~~~~~~a~~ia~~-v~GV~~V~n~l~v~~~~~~-------~~~---~~~~D~~It~~vk~~L~~~~~v~~~~ 158 (203)
T PRK10568 90 TLSGFVESQAQAEEAVKVAKG-VEGVTSVSDKLHVRDAKEQ-------SVK---GYAGDTATTSEIKAKLLADDIVPSRK 158 (203)
T ss_pred EEEEEeCCHHHHHHHHHHHHh-CCCceEEEeeEEeeccccc-------ccc---ccCCcHHHHHHHHHHHhhCCCCCcce
Confidence 345655567888889999987 899998874 333221100 011 11112456777877775322 3345
Q ss_pred EEEEeec
Q 023492 262 AFVHLDY 268 (281)
Q Consensus 262 v~i~iep 268 (281)
+.+.++.
T Consensus 159 I~V~v~~ 165 (203)
T PRK10568 159 VKVETTD 165 (203)
T ss_pred eEEEEeC
Confidence 6665553
No 188
>PRK00295 hypothetical protein; Provisional
Probab=20.47 E-value=1.1e+02 Score=20.40 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=7.7
Q ss_pred CCCcccccCC
Q 023492 272 HRPEHAQAHY 281 (281)
Q Consensus 272 ~~~~~~~~~~ 281 (281)
...+.+|+||
T Consensus 59 ~~~e~~PPHY 68 (68)
T PRK00295 59 FEEEAPPPHY 68 (68)
T ss_pred CCCCCCcCCC
Confidence 4456789999
No 189
>PRK04406 hypothetical protein; Provisional
Probab=20.28 E-value=1.3e+02 Score=20.61 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=7.4
Q ss_pred CCCcccccCC
Q 023492 272 HRPEHAQAHY 281 (281)
Q Consensus 272 ~~~~~~~~~~ 281 (281)
...+.+|+||
T Consensus 66 ~~~e~pPPHY 75 (75)
T PRK04406 66 PAEETPPPHY 75 (75)
T ss_pred CCCCCCccCC
Confidence 3456789999
No 190
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=20.22 E-value=1.2e+02 Score=31.18 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCCcceee----eEEEEEecCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCceeEEEEeec
Q 023492 193 PEYLQKLTYLCWNHHKSIRHID----TVRAYTFGSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEIERAFVHLDY 268 (281)
Q Consensus 193 ~~~~~~i~~~i~~~~~~v~~i~----~~~~~~~g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i~~v~i~iep 268 (281)
++..+++++.+++ +||...-- ..|+-..=....-++-|-+-++ ++++.+++++++++.++..||..++.++...
T Consensus 633 ~~lie~l~~~~~~-lpG~~~~~tqPI~~R~delltGVrsdvaIKvfG~-Dl~~L~~la~qI~~~lk~v~Ga~dv~~E~~~ 710 (1027)
T COG3696 633 DELIEELRKTLEQ-LPGLANSFTQPIRMRIDELLTGVRSDLAIKVFGD-DLAELNELAEQIEEVLKTVPGAVDVLAERQE 710 (1027)
T ss_pred HHHHHHHHHHHHh-CCCcccccccchhHHHHHHHhccccceEEEEeCC-CHHHHHHHHHHHHHHHhcCcchhhheeeecC
Q ss_pred cCC
Q 023492 269 EYT 271 (281)
Q Consensus 269 ~~~ 271 (281)
..+
T Consensus 711 g~~ 713 (1027)
T COG3696 711 GGP 713 (1027)
T ss_pred Cce
No 191
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=20.17 E-value=1.9e+02 Score=20.62 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 023492 228 EVDIVLPASMPLQEAHDIGESLQEKLELLPEI 259 (281)
Q Consensus 228 ~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i 259 (281)
+++|..|..+..+++.+.++++-+.+.+.+++
T Consensus 3 ~I~I~r~H~Lg~~eAr~~~e~~a~~l~~~~~~ 34 (91)
T TIGR02610 3 SISVERDHSLGPAAARAKAEDLARKLTDRYGL 34 (91)
T ss_pred ceEEEecCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 57889999999999999999998888766664
No 192
>KOG3320 consensus 40S ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
Probab=20.08 E-value=4.8e+02 Score=21.16 Aligned_cols=73 Identities=12% Similarity=0.161 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHhhc---CCCc-ceeeeEEE-----EEe-cCeEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCCc
Q 023492 190 SAAPEYLQKLTYLCWNH---HKSI-RHIDTVRA-----YTF-GSHYFVEVDIVLPASMPLQEAHDIGESLQEKLELLPEI 259 (281)
Q Consensus 190 ~~~~~~~~~i~~~i~~~---~~~v-~~i~~~~~-----~~~-g~~~~v~~~i~v~~~~~~~~~~~i~~~i~~~l~~~~~i 259 (281)
+.|.|...+|.+++.+. .+.. ....++.+ ..+ |....+-+.+-++ -....+++.-++-+.+++.+.-
T Consensus 14 ~~ptE~E~~iaqal~~le~~n~~lk~~lr~L~I~~a~eiev~Gg~Kaivi~VP~p---~lk~fqki~~~LvreleKKF~g 90 (192)
T KOG3320|consen 14 SKPTEFEMQIAQALLDLEMDNSDLKAQLRELNITSAKEIEVGGGRKAIVIFVPVP---QLKAFQKIQVRLVRELEKKFSG 90 (192)
T ss_pred CCchHHHHHHHHHHHHHHhcchhhHHHhhhheeeeeEEEEecCCcEEEEEEechH---HHHHHHHHHHHHHHHHHHhcCC
Confidence 45667777777777551 1111 12233333 334 4456666666665 4556788888888888754444
Q ss_pred eeEEEE
Q 023492 260 ERAFVH 265 (281)
Q Consensus 260 ~~v~i~ 265 (281)
.+|.+-
T Consensus 91 k~Vifi 96 (192)
T KOG3320|consen 91 KHVIFI 96 (192)
T ss_pred ceEEEE
Confidence 556554
No 193
>PRK02935 hypothetical protein; Provisional
Probab=20.04 E-value=3.7e+02 Score=19.79 Aligned_cols=19 Identities=0% Similarity=0.071 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023492 102 VVGIMLSVTLVKLLLVVYC 120 (281)
Q Consensus 102 ~~~~~~~~~~~~~~l~~~~ 120 (281)
.+++++++......+|+|.
T Consensus 43 fm~~G~l~~l~S~vvYFwi 61 (110)
T PRK02935 43 FMLLGFLAVIASTVVYFWI 61 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666654
Done!