BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023493
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 113/216 (52%), Gaps = 18/216 (8%)
Query: 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
+KKKA ++ L G S++LVGM + KT +GK +A +L Y +FD D+L+ +A G S A+
Sbjct: 35 LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAE 94
Query: 140 AFRESDEKGYQQAETEVLKQLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGM 198
F E +++ ETE LK+LS M ++VV G GAV N + GIS+W+DVP
Sbjct: 95 IFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEA 154
Query: 199 VARM--------------DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLG 244
+A D SG + L +L ++ + Y A VSL+ + +LG
Sbjct: 155 LAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLG 214
Query: 245 YDDLDAVTTEDMTLEVLKEIEKLTRKKKMMEEAARP 280
Y + +T ++ +E ++++ K+ M ARP
Sbjct: 215 YRSVSDLTPAEIAIEAFEQVQSYLEKEDGM---ARP 247
>pdb|2PT5|A Chain A, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|B Chain B, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|C Chain C, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|D Chain D, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
Length = 168
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 9/149 (6%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
++L+G + K+ +G L+ +L ++D D V + G S + F + E +++ E E
Sbjct: 3 IYLIGFXCSGKSTVGSLLSRSLNIPFYDVDEEV-QKREGLSIPQIFEKKGEAYFRKLEFE 61
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVP-PGMVARMDHSGFPESEVL 213
VLK LS +V+ G G + L + G +++ID+P + R S E +L
Sbjct: 62 VLKDLSEKENVVISTGGGLGANEEALNFXKSRGTTVFIDIPFEVFLERCKDS--KERPLL 119
Query: 214 P----QLFALYKEMRDGYATADVTVSLQK 238
++ L++E R Y+ AD+ V +K
Sbjct: 120 KRPLDEIKNLFEERRKIYSKADIKVKGEK 148
>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
pdb|1SHK|B Chain B, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+F+VG KT +G+ LA AL Y + D+D + + G + A G+++ E+E
Sbjct: 5 IFMVGARGCGKTTVGRELARALGYEFVDTD-IFMQHTSGMTVADVVAAEGWPGFRRRESE 63
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVP 195
L+ +++ R VV G G V N +R HG +++ P
Sbjct: 64 ALQAVATPNR-VVATGGGMVLLEQNRQFMRAHGTVVYLFAP 103
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 26/168 (15%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++FLVG A K+ +G+ LA L ++DSD + E G F E+G++ E
Sbjct: 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI-EKRTGADVGWVFDLEGEEGFRDREE 64
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVP-PGMVARMD--------H 204
+V+ +L+ +V+ G G+V+S L G+ ++++ +AR H
Sbjct: 65 KVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLH 124
Query: 205 SGFPESEVLPQLFA----LYKEMRDGYATADVTV-----SLQKVASQL 243
P EVL L LY+E+ ADVT+ S + VA+Q+
Sbjct: 125 VETPPREVLEALANERNPLYEEI------ADVTIRTDDQSAKVVANQI 166
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+FL G A KT LGK A L + D D + E ++ + F E E G+++ E
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYI-EERFHKTVGELFTERGEAGFRELERN 86
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALL-RHGISLWIDVPPGMVAR 201
+L +++ +V+ G GA N+ + R G +++++V P ++ R
Sbjct: 87 MLHEVAEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFR 133
>pdb|3TRF|A Chain A, Structure Of A Shikimate Kinase (Arok) From Coxiella
Burnetii
pdb|3TRF|B Chain B, Structure Of A Shikimate Kinase (Arok) From Coxiella
Burnetii
Length = 185
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAE 153
T+++L+G+ A KT +G LA + +DSD + E G A F E G+++ E
Sbjct: 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEI-EKRTGADIAWIFEMEGEAGFRRRE 64
Query: 154 TEVLKQLSSMGRLVVCAGNGAVQSSAN 180
E+++ L + +++ G G V N
Sbjct: 65 REMIEALCKLDNIILATGGGVVLDEKN 91
>pdb|1E6C|A Chain A, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi
pdb|1E6C|B Chain B, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi
Length = 173
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+F+VG T +G+ LA AL Y + D+D + + G + A G+++ E+E
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFVDTD-IFMQHTSGMTVADVVAAEGWPGFRRRESE 63
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVP 195
L+ +++ R VV G G V N +R HG +++ P
Sbjct: 64 ALQAVATPNR-VVATGGGMVLLEQNRQFMRAHGTVVYLFAP 103
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Adp At 2.15
Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Amppcp At 2.85
Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate At 1.75 Angstrom
Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 97 FLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEV 156
LVG+ + K+ +G+ LA AL D+D + E G S A F E+ +++ E +V
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGVGLLDTD-VAIEQRTGRSIADIFATDGEQEFRRIEEDV 64
Query: 157 LKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDV 194
++ + V+ G GAV S A L +++++
Sbjct: 65 VRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEI 102
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 97 FLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEV 156
LVG+ + K+ +G+ LA AL D+D + E G S A F E+ +++ E +V
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGVGLLDTD-VAIEQRTGRSIADIFATDGEQEFRRIEEDV 64
Query: 157 LKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDV 194
++ + V+ G GAV S A L +++++
Sbjct: 65 VRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEI 102
>pdb|3N2E|A Chain A, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
pdb|3N2E|B Chain B, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
pdb|3N2E|C Chain C, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
Length = 168
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+ L+G + K+ L + L AL+ D+D ++ E G S + F E E ++ E
Sbjct: 4 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFEKN 62
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDH 204
++ +L ++ V + G + NL L L +D ++ R++
Sbjct: 63 LIDELKTLKTPHVISTGGGIVMHENLKGLGTTFYLKMDFET-LIKRLNQ 110
>pdb|1ZUH|A Chain A, Structural Basis For Shikimate-Binding Specificity Of
Helicobacter Pylori Shikimate Kinase
pdb|1ZUI|A Chain A, Structural Basis For Shikimate-binding Specificity Of
Helicobacter Pylori Shikimate Kinase
pdb|3HR7|A Chain A, Crystal Structure Of The Shikimate Kinase-Sulfate Complex
From Helicobacter Pylori
pdb|3HR7|B Chain B, Crystal Structure Of The Shikimate Kinase-Sulfate Complex
From Helicobacter Pylori
pdb|3MUF|A Chain A, Shikimate Kinase From Helicobacter Pylori In Complex With
Shikimate-3- Phosphate And Adp
Length = 168
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 98 LVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVL 157
L+G + K+ L + L AL+ D+D ++ E G S + F E E ++ E ++
Sbjct: 12 LIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFEKNLI 70
Query: 158 KQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDH 204
+L ++ V + G + NL L L +D ++ R++
Sbjct: 71 DELKTLKTPHVISTGGGIVMHENLKGLGTTFYLKMDFET-LIKRLNQ 116
>pdb|3MRS|A Chain A, Crystal Structure Of Shikimate Kinase Mutant (R57a) From
Helicobacter Pylori
Length = 168
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+ L+G + K+ L + L AL+ D+D ++ E G S + F E E + E
Sbjct: 10 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFAMFEKN 68
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDH 204
++ +L ++ V + G + NL L L +D ++ R++
Sbjct: 69 LIDELKTLKTPHVISTGGGIVMHENLKGLGTTFYLKMDFET-LIKRLNQ 116
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 31 LHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTE 90
L Q++ P+ TS S+ S ITTR+ DTT + P+F T
Sbjct: 319 LDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVI-----HIPNF---------DTT 364
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128
LK T L + +++ T L + R+Y+ +D L+
Sbjct: 365 LKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLL 402
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 31 LHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTE 90
L Q++ P+ TS S+ S ITTR+ DTT + P+F T
Sbjct: 100 LDIQNFLPLETSKFKSLTSEYKMITTRAFQLDTTIEVI-----HIPNF---------DTT 145
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128
LK T L + +++ T L + R+Y+ +D L+
Sbjct: 146 LKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLL 183
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
Length = 832
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 208 PESEVLPQLFALYKEMRD----------GYATADVTVSLQKVASQLGYD 246
P E P+ AL KE+ D GY DV SL K A + GY+
Sbjct: 87 PTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYE 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,967,092
Number of Sequences: 62578
Number of extensions: 256704
Number of successful extensions: 815
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 29
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)