Query 023493
Match_columns 281
No_of_seqs 232 out of 1398
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:27:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02199 shikimate kinase 100.0 2.4E-36 5.3E-41 275.9 23.3 204 69-274 79-296 (303)
2 COG0703 AroK Shikimate kinase 100.0 8.8E-34 1.9E-38 240.7 18.6 162 93-268 2-170 (172)
3 PRK13948 shikimate kinase; Pro 100.0 1.8E-30 4E-35 224.1 20.4 166 91-269 8-178 (182)
4 PRK13949 shikimate kinase; Pro 100.0 2E-28 4.4E-33 208.9 18.0 157 94-263 2-168 (169)
5 PRK00625 shikimate kinase; Pro 100.0 1.6E-27 3.5E-32 204.2 19.3 163 94-264 1-171 (173)
6 PRK05057 aroK shikimate kinase 100.0 6.3E-27 1.4E-31 200.1 19.5 162 92-266 3-171 (172)
7 PRK14021 bifunctional shikimat 100.0 4.1E-27 8.8E-32 233.5 19.6 162 92-266 5-176 (542)
8 PRK13946 shikimate kinase; Pro 100.0 1.3E-26 2.9E-31 199.8 20.1 169 89-270 6-180 (184)
9 PRK13947 shikimate kinase; Pro 99.9 4.9E-26 1.1E-30 192.7 19.2 157 94-263 2-164 (171)
10 PF01202 SKI: Shikimate kinase 99.9 8.1E-27 1.8E-31 196.5 14.0 151 102-265 1-158 (158)
11 PRK00131 aroK shikimate kinase 99.9 2.5E-24 5.4E-29 181.4 20.5 165 91-268 2-173 (175)
12 PRK03731 aroL shikimate kinase 99.9 1.6E-23 3.4E-28 177.6 18.5 158 94-266 3-170 (171)
13 PRK08154 anaerobic benzoate ca 99.9 3.6E-23 7.7E-28 192.3 19.7 168 91-271 131-306 (309)
14 PRK13951 bifunctional shikimat 99.9 5.9E-23 1.3E-27 201.3 18.8 154 94-261 1-156 (488)
15 cd00464 SK Shikimate kinase (S 99.9 5.3E-22 1.2E-26 164.4 15.6 142 95-237 1-148 (154)
16 PRK04182 cytidylate kinase; Pr 99.7 2.4E-16 5.1E-21 133.6 17.0 157 94-271 1-178 (180)
17 PRK03839 putative kinase; Prov 99.7 2.6E-16 5.6E-21 134.6 12.7 149 94-267 1-154 (180)
18 PRK14532 adenylate kinase; Pro 99.7 5.5E-16 1.2E-20 133.3 13.7 156 94-265 1-186 (188)
19 PRK05541 adenylylsulfate kinas 99.7 2.4E-16 5.2E-21 134.3 10.5 161 91-267 5-173 (176)
20 PRK09169 hypothetical protein; 99.7 8.3E-16 1.8E-20 166.4 15.3 144 89-236 2106-2263(2316)
21 COG1102 Cmk Cytidylate kinase 99.6 8.3E-15 1.8E-19 122.9 15.3 156 94-269 1-175 (179)
22 PRK05537 bifunctional sulfate 99.6 1.2E-15 2.5E-20 152.4 10.4 152 91-266 390-562 (568)
23 PRK10078 ribose 1,5-bisphospho 99.6 3.1E-15 6.8E-20 128.9 10.7 159 93-270 2-180 (186)
24 PRK06762 hypothetical protein; 99.6 2.3E-14 5E-19 120.8 14.2 151 93-265 2-163 (166)
25 PRK14530 adenylate kinase; Pro 99.6 5E-14 1.1E-18 124.1 16.9 110 92-205 2-126 (215)
26 PRK13975 thymidylate kinase; P 99.6 1.3E-14 2.8E-19 125.2 11.9 158 93-268 2-192 (196)
27 KOG3354 Gluconate kinase [Carb 99.6 7.9E-14 1.7E-18 116.2 14.6 153 95-267 14-189 (191)
28 COG3265 GntK Gluconate kinase 99.6 1.2E-13 2.7E-18 114.2 14.2 146 99-266 1-159 (161)
29 TIGR02173 cyt_kin_arch cytidyl 99.6 2.9E-13 6.3E-18 113.8 16.9 151 94-264 1-170 (171)
30 TIGR01313 therm_gnt_kin carboh 99.6 2.6E-13 5.7E-18 114.0 16.4 149 96-265 1-162 (163)
31 PRK01184 hypothetical protein; 99.5 4.7E-13 1E-17 114.7 16.9 159 94-269 2-181 (184)
32 COG0283 Cmk Cytidylate kinase 99.5 5.5E-13 1.2E-17 116.9 17.0 172 94-267 5-220 (222)
33 TIGR01360 aden_kin_iso1 adenyl 99.5 2.2E-13 4.8E-18 116.2 13.8 158 92-266 2-187 (188)
34 PRK00889 adenylylsulfate kinas 99.5 7E-14 1.5E-18 119.0 10.4 157 92-266 3-170 (175)
35 PRK13808 adenylate kinase; Pro 99.5 6.6E-13 1.4E-17 124.3 17.9 160 94-269 1-196 (333)
36 TIGR01359 UMP_CMP_kin_fam UMP- 99.5 7.2E-13 1.6E-17 113.1 16.6 152 95-264 1-182 (183)
37 PRK03846 adenylylsulfate kinas 99.5 9.5E-14 2.1E-18 120.9 10.9 159 91-266 22-192 (198)
38 PRK02496 adk adenylate kinase; 99.5 1.1E-12 2.4E-17 112.5 16.0 153 94-264 2-182 (184)
39 PRK13477 bifunctional pantoate 99.5 1.6E-12 3.4E-17 128.1 18.6 156 91-266 282-503 (512)
40 PLN02200 adenylate kinase fami 99.5 1.4E-12 3.1E-17 116.9 16.5 162 92-271 42-229 (234)
41 PRK14531 adenylate kinase; Pro 99.5 2.1E-12 4.5E-17 111.1 16.6 155 94-264 3-182 (183)
42 COG1936 Predicted nucleotide k 99.5 8.8E-13 1.9E-17 111.9 13.0 144 94-266 1-156 (180)
43 PRK00279 adk adenylate kinase; 99.5 2.9E-12 6.2E-17 112.9 15.8 108 94-205 1-127 (215)
44 PLN02674 adenylate kinase 99.4 3.4E-12 7.3E-17 115.0 16.1 109 92-205 30-158 (244)
45 TIGR03574 selen_PSTK L-seryl-t 99.4 2E-12 4.4E-17 116.4 14.2 152 95-266 1-169 (249)
46 COG0529 CysC Adenylylsulfate k 99.4 7.3E-13 1.6E-17 112.8 10.3 165 83-267 13-192 (197)
47 cd00227 CPT Chloramphenicol (C 99.4 5.5E-12 1.2E-16 107.6 15.8 154 92-264 1-174 (175)
48 PRK14733 coaE dephospho-CoA ki 99.4 3E-12 6.5E-17 112.5 13.6 161 92-267 5-199 (204)
49 PRK00081 coaE dephospho-CoA ki 99.4 2.6E-12 5.6E-17 111.8 12.6 155 94-266 3-193 (194)
50 PRK06217 hypothetical protein; 99.4 6.1E-12 1.3E-16 108.1 14.7 101 94-205 2-104 (183)
51 KOG3347 Predicted nucleotide k 99.4 1.7E-12 3.7E-17 107.7 9.7 142 91-260 5-160 (176)
52 PRK14734 coaE dephospho-CoA ki 99.4 7E-12 1.5E-16 109.8 14.2 158 94-269 2-197 (200)
53 TIGR01351 adk adenylate kinase 99.4 1.2E-11 2.5E-16 108.7 15.5 107 95-205 1-124 (210)
54 PRK14528 adenylate kinase; Pro 99.4 1.3E-11 2.8E-16 106.8 15.4 152 94-263 2-185 (186)
55 PRK14527 adenylate kinase; Pro 99.4 2.2E-11 4.8E-16 105.3 16.8 156 92-264 5-190 (191)
56 PRK03333 coaE dephospho-CoA ki 99.4 1.4E-12 3E-17 125.3 10.1 159 94-269 2-195 (395)
57 PRK08356 hypothetical protein; 99.4 2.6E-11 5.6E-16 105.3 16.8 155 93-267 5-193 (195)
58 TIGR02322 phosphon_PhnN phosph 99.4 4.3E-12 9.2E-17 108.2 11.6 154 93-265 1-177 (179)
59 PRK08233 hypothetical protein; 99.4 1.3E-11 2.7E-16 104.8 13.2 156 92-266 2-177 (182)
60 cd02020 CMPK Cytidine monophos 99.4 2.1E-11 4.5E-16 99.8 13.5 132 95-236 1-146 (147)
61 PRK14730 coaE dephospho-CoA ki 99.3 1.4E-11 3.1E-16 107.4 13.1 154 94-264 2-192 (195)
62 TIGR00455 apsK adenylylsulfate 99.3 6.3E-12 1.4E-16 107.9 10.0 156 91-264 16-184 (184)
63 PLN02422 dephospho-CoA kinase 99.3 3.4E-11 7.4E-16 107.8 14.7 157 94-268 2-196 (232)
64 PRK14526 adenylate kinase; Pro 99.3 5.5E-11 1.2E-15 105.0 15.8 108 94-205 1-122 (211)
65 cd02021 GntK Gluconate kinase 99.3 1.6E-11 3.5E-16 101.6 11.5 124 95-225 1-137 (150)
66 PRK00023 cmk cytidylate kinase 99.3 2E-10 4.3E-15 102.4 18.6 39 92-130 3-41 (225)
67 PLN02459 probable adenylate ki 99.3 6.7E-11 1.5E-15 107.4 15.6 106 93-202 29-149 (261)
68 TIGR00017 cmk cytidylate kinas 99.3 1.6E-10 3.4E-15 102.6 17.3 37 94-130 3-39 (217)
69 PRK04040 adenylate kinase; Pro 99.3 9.8E-11 2.1E-15 101.6 15.4 159 93-264 2-187 (188)
70 TIGR00152 dephospho-CoA kinase 99.3 4E-11 8.6E-16 103.4 12.8 149 95-261 1-187 (188)
71 PRK14529 adenylate kinase; Pro 99.3 1.1E-10 2.5E-15 103.9 15.6 105 94-202 1-122 (223)
72 cd01428 ADK Adenylate kinase ( 99.3 4.3E-11 9.3E-16 102.7 12.2 108 95-206 1-126 (194)
73 PTZ00451 dephospho-CoA kinase; 99.3 1.3E-10 2.8E-15 104.8 15.6 161 94-268 2-209 (244)
74 PRK14731 coaE dephospho-CoA ki 99.3 2.1E-10 4.5E-15 101.0 16.5 158 93-269 5-205 (208)
75 PTZ00088 adenylate kinase 1; P 99.3 1.6E-10 3.6E-15 103.3 15.0 107 92-202 5-126 (229)
76 PRK11545 gntK gluconate kinase 99.3 2.2E-10 4.7E-15 97.1 14.7 147 99-266 1-160 (163)
77 PRK09518 bifunctional cytidyla 99.2 1.5E-10 3.2E-15 118.9 16.1 37 94-130 2-38 (712)
78 PF01583 APS_kinase: Adenylyls 99.2 4E-12 8.6E-17 107.2 3.4 108 92-206 1-120 (156)
79 PF13671 AAA_33: AAA domain; P 99.2 4.5E-11 9.7E-16 97.5 9.5 124 95-223 1-140 (143)
80 PRK09825 idnK D-gluconate kina 99.2 9.3E-10 2E-14 94.5 17.6 156 91-269 1-171 (176)
81 cd01672 TMPK Thymidine monopho 99.2 3.8E-10 8.1E-15 96.5 14.9 157 94-265 1-199 (200)
82 PRK14732 coaE dephospho-CoA ki 99.2 2.9E-10 6.4E-15 99.3 14.2 157 95-269 1-193 (196)
83 PRK06547 hypothetical protein; 99.2 4.1E-11 8.9E-16 102.6 8.6 120 84-206 7-139 (172)
84 PRK11860 bifunctional 3-phosph 99.2 1.9E-11 4.1E-16 124.6 7.6 39 93-131 442-480 (661)
85 PRK05506 bifunctional sulfate 99.2 7.8E-11 1.7E-15 119.5 11.9 160 89-266 456-628 (632)
86 PLN02842 nucleotide kinase 99.2 2.5E-10 5.4E-15 112.0 14.7 160 97-274 1-210 (505)
87 PHA02530 pseT polynucleotide k 99.2 4.7E-10 1E-14 103.2 15.6 130 93-223 2-140 (300)
88 TIGR03575 selen_PSTK_euk L-ser 99.2 6E-11 1.3E-15 111.6 9.6 95 96-202 2-118 (340)
89 KOG3079 Uridylate kinase/adeny 99.2 7.4E-10 1.6E-14 94.9 15.3 159 91-266 6-193 (195)
90 COG0237 CoaE Dephospho-CoA kin 99.2 3.1E-10 6.7E-15 99.6 13.4 161 93-270 2-196 (201)
91 PRK05416 glmZ(sRNA)-inactivati 99.2 3.6E-10 7.8E-15 104.3 14.4 142 92-266 5-160 (288)
92 COG1428 Deoxynucleoside kinase 99.2 6.3E-10 1.4E-14 97.4 15.1 165 93-269 4-211 (216)
93 PRK13973 thymidylate kinase; P 99.2 1.5E-09 3.2E-14 95.7 17.4 162 91-269 1-209 (213)
94 PRK00698 tmk thymidylate kinas 99.2 1.6E-09 3.4E-14 93.8 17.2 70 186-268 128-204 (205)
95 PRK08118 topology modulation p 99.2 1.2E-10 2.5E-15 99.2 9.2 92 94-202 2-95 (167)
96 KOG3877 NADH:ubiquinone oxidor 99.2 6.2E-11 1.3E-15 107.3 7.7 188 65-263 44-294 (393)
97 cd02022 DPCK Dephospho-coenzym 99.1 3.1E-10 6.8E-15 97.3 10.6 138 95-237 1-174 (179)
98 PRK12269 bifunctional cytidyla 99.1 4E-10 8.7E-15 117.1 11.8 41 91-131 32-72 (863)
99 TIGR00041 DTMP_kinase thymidyl 99.1 1.8E-09 4E-14 93.0 13.7 28 92-119 2-29 (195)
100 PF01121 CoaE: Dephospho-CoA k 99.1 2.8E-10 6.1E-15 98.2 8.0 138 94-237 1-175 (180)
101 PF07931 CPT: Chloramphenicol 99.1 6.1E-10 1.3E-14 95.6 9.0 152 93-265 1-174 (174)
102 COG0563 Adk Adenylate kinase a 99.1 2.8E-09 6.1E-14 91.8 12.5 39 94-132 1-39 (178)
103 PLN02924 thymidylate kinase 99.0 2.2E-08 4.7E-13 89.1 18.0 165 91-280 14-213 (220)
104 PRK13976 thymidylate kinase; P 99.0 2.9E-08 6.4E-13 87.6 18.4 166 94-271 1-206 (209)
105 COG2019 AdkA Archaeal adenylat 99.0 2E-08 4.4E-13 85.1 16.2 159 94-265 5-187 (189)
106 KOG0635 Adenosine 5'-phosphosu 99.0 1.6E-09 3.4E-14 90.5 8.9 156 92-266 30-200 (207)
107 PRK05480 uridine/cytidine kina 99.0 5.3E-09 1.1E-13 91.5 12.7 38 92-129 5-45 (209)
108 KOG2004 Mitochondrial ATP-depe 99.0 2.1E-10 4.5E-15 114.7 3.9 77 47-123 371-468 (906)
109 PF03668 ATP_bind_2: P-loop AT 99.0 3.3E-09 7.2E-14 97.1 10.9 139 94-265 2-155 (284)
110 PTZ00322 6-phosphofructo-2-kin 99.0 1.8E-10 4E-15 117.4 2.4 144 91-235 213-381 (664)
111 cd02023 UMPK Uridine monophosp 99.0 7.2E-09 1.6E-13 89.8 12.1 35 95-129 1-38 (198)
112 PRK09183 transposase/IS protei 99.0 3.1E-10 6.6E-15 103.2 3.5 99 18-128 33-142 (259)
113 PRK13974 thymidylate kinase; P 99.0 4.6E-08 9.9E-13 86.2 17.1 27 92-118 2-28 (212)
114 cd02030 NDUO42 NADH:Ubiquinone 99.0 3E-08 6.4E-13 87.8 15.5 28 95-122 1-28 (219)
115 COG0125 Tmk Thymidylate kinase 98.9 3.9E-08 8.5E-13 86.8 15.5 162 91-269 1-206 (208)
116 COG4088 Predicted nucleotide k 98.9 1.2E-08 2.7E-13 89.2 11.0 138 94-236 2-156 (261)
117 PRK07261 topology modulation p 98.9 4.3E-09 9.2E-14 89.9 7.8 94 94-202 1-95 (171)
118 PF00406 ADK: Adenylate kinase 98.9 1.2E-08 2.7E-13 84.7 10.1 101 98-202 1-119 (151)
119 PRK06526 transposase; Provisio 98.9 9.2E-10 2E-14 99.9 3.0 88 18-117 29-122 (254)
120 COG0466 Lon ATP-dependent Lon 98.9 1.2E-09 2.7E-14 109.5 4.1 78 47-124 283-381 (782)
121 cd02027 APSK Adenosine 5'-phos 98.9 4.1E-09 8.8E-14 88.0 6.6 106 95-206 1-117 (149)
122 PLN02165 adenylate isopentenyl 98.8 1.2E-08 2.5E-13 95.8 9.4 132 89-221 39-213 (334)
123 PRK06696 uridine kinase; Valid 98.8 6.3E-08 1.4E-12 85.8 13.4 37 92-128 21-62 (223)
124 PRK00300 gmk guanylate kinase; 98.8 2.4E-08 5.2E-13 86.7 10.3 155 92-267 4-185 (205)
125 PRK08181 transposase; Validate 98.8 2E-09 4.3E-14 98.5 3.2 101 18-130 36-148 (269)
126 KOG3220 Similar to bacterial d 98.8 8E-08 1.7E-12 83.6 12.4 158 94-270 2-198 (225)
127 PRK07933 thymidylate kinase; V 98.8 1.9E-07 4.1E-12 82.6 15.0 25 94-118 1-25 (213)
128 PF13207 AAA_17: AAA domain; P 98.8 7.2E-09 1.6E-13 82.3 4.4 34 95-128 1-34 (121)
129 TIGR03263 guanyl_kin guanylate 98.7 7.5E-08 1.6E-12 81.8 10.4 27 93-119 1-27 (180)
130 PTZ00301 uridine kinase; Provi 98.7 1.5E-07 3.2E-12 83.2 12.4 38 92-129 2-46 (210)
131 PRK12339 2-phosphoglycerate ki 98.7 3E-07 6.4E-12 80.5 14.2 39 92-130 2-40 (197)
132 COG1660 Predicted P-loop-conta 98.7 1.5E-07 3.2E-12 84.9 12.4 140 94-266 2-157 (286)
133 cd01673 dNK Deoxyribonucleosid 98.7 2.2E-07 4.8E-12 80.0 12.9 29 95-123 1-29 (193)
134 COG0645 Predicted kinase [Gene 98.7 2.5E-07 5.4E-12 78.6 12.8 131 94-228 2-148 (170)
135 PRK09270 nucleoside triphospha 98.7 1.5E-07 3.2E-12 83.8 12.0 143 91-237 31-221 (229)
136 TIGR00235 udk uridine kinase. 98.7 2.4E-07 5.2E-12 81.1 13.1 37 92-128 5-44 (207)
137 PRK14737 gmk guanylate kinase; 98.7 1.2E-07 2.5E-12 82.3 11.0 63 188-265 118-183 (186)
138 PF00485 PRK: Phosphoribulokin 98.7 1.4E-07 3E-12 81.8 11.0 24 95-118 1-24 (194)
139 PF13189 Cytidylate_kin2: Cyti 98.7 7.8E-08 1.7E-12 82.6 8.8 134 95-236 1-177 (179)
140 PF08433 KTI12: Chromatin asso 98.7 4E-07 8.7E-12 83.4 13.2 135 94-235 2-154 (270)
141 COG0572 Udk Uridine kinase [Nu 98.7 2.1E-07 4.6E-12 82.3 10.8 37 93-129 8-47 (218)
142 PRK12338 hypothetical protein; 98.7 1E-06 2.2E-11 82.3 15.7 41 92-132 3-44 (319)
143 PF13238 AAA_18: AAA domain; P 98.6 1.9E-07 4.2E-12 74.1 9.0 23 96-118 1-23 (129)
144 PRK14738 gmk guanylate kinase; 98.6 2.9E-07 6.3E-12 80.8 10.9 28 89-116 9-36 (206)
145 PF02223 Thymidylate_kin: Thym 98.6 8.2E-07 1.8E-11 76.0 12.7 63 185-260 118-186 (186)
146 smart00072 GuKc Guanylate kina 98.6 7.3E-07 1.6E-11 76.7 11.4 65 187-266 115-182 (184)
147 PRK15453 phosphoribulokinase; 98.6 6.5E-07 1.4E-11 82.2 11.2 38 92-129 4-46 (290)
148 PRK07667 uridine kinase; Provi 98.5 8E-07 1.7E-11 77.2 11.0 39 92-130 16-59 (193)
149 PF00625 Guanylate_kin: Guanyl 98.5 2.6E-07 5.7E-12 79.2 7.6 27 92-118 1-27 (183)
150 COG0194 Gmk Guanylate kinase [ 98.5 1.1E-06 2.4E-11 75.8 11.1 28 92-119 3-30 (191)
151 PLN02348 phosphoribulokinase 98.5 4.6E-07 9.9E-12 86.7 8.8 27 92-118 48-74 (395)
152 COG3709 Uncharacterized compon 98.5 5.3E-06 1.1E-10 70.2 13.5 156 92-268 4-184 (192)
153 cd02026 PRK Phosphoribulokinas 98.5 6.9E-07 1.5E-11 82.0 8.9 34 95-128 1-37 (273)
154 TIGR01663 PNK-3'Pase polynucle 98.4 1.4E-06 3E-11 86.6 10.7 95 91-207 367-470 (526)
155 cd02024 NRK1 Nicotinamide ribo 98.4 7.8E-07 1.7E-11 77.3 7.7 35 95-129 1-36 (187)
156 PRK10787 DNA-binding ATP-depen 98.4 2.1E-07 4.5E-12 96.6 4.1 77 47-123 282-379 (784)
157 cd02029 PRK_like Phosphoribulo 98.4 2.3E-06 5E-11 78.1 10.0 35 95-129 1-40 (277)
158 PRK07429 phosphoribulokinase; 98.4 4.9E-06 1.1E-10 78.3 11.9 37 92-128 7-46 (327)
159 PRK04220 2-phosphoglycerate ki 98.3 2.5E-05 5.3E-10 72.6 15.9 44 86-129 85-129 (301)
160 cd02028 UMPK_like Uridine mono 98.3 1.5E-06 3.3E-11 74.7 6.0 35 95-129 1-40 (179)
161 PRK12337 2-phosphoglycerate ki 98.3 3.5E-05 7.6E-10 75.3 16.0 41 92-132 254-295 (475)
162 cd02025 PanK Pantothenate kina 98.2 7.5E-06 1.6E-10 72.7 9.3 34 95-128 1-41 (220)
163 TIGR00390 hslU ATP-dependent p 98.2 2.6E-06 5.7E-11 82.2 6.5 60 90-150 44-106 (441)
164 PHA00729 NTP-binding motif con 98.2 1E-05 2.2E-10 72.2 9.6 39 80-119 5-43 (226)
165 PHA03132 thymidine kinase; Pro 98.2 8.4E-06 1.8E-10 81.6 9.4 29 92-120 256-284 (580)
166 PF01695 IstB_IS21: IstB-like 98.2 2.2E-06 4.8E-11 73.7 4.7 80 52-132 1-91 (178)
167 PLN02318 phosphoribulokinase/u 98.2 1.5E-05 3.3E-10 79.8 11.2 55 73-127 43-100 (656)
168 TIGR00554 panK_bact pantothena 98.1 7.2E-06 1.6E-10 75.9 7.5 37 92-128 61-104 (290)
169 COG3896 Chloramphenicol 3-O-ph 98.1 7.9E-05 1.7E-09 63.0 12.3 167 80-265 10-204 (205)
170 PRK05439 pantothenate kinase; 98.1 9.4E-06 2E-10 75.8 7.0 37 92-128 85-128 (311)
171 TIGR00763 lon ATP-dependent pr 98.0 3.6E-06 7.7E-11 87.6 4.3 77 47-123 280-377 (775)
172 COG2074 2-phosphoglycerate kin 98.0 0.0002 4.4E-09 64.8 14.2 44 87-130 83-127 (299)
173 PF00004 AAA: ATPase family as 98.0 5.6E-06 1.2E-10 65.8 3.7 29 96-124 1-29 (132)
174 PF06414 Zeta_toxin: Zeta toxi 98.0 3E-05 6.5E-10 67.5 8.6 40 89-128 11-53 (199)
175 COG4639 Predicted kinase [Gene 98.0 7.5E-05 1.6E-09 62.8 9.9 107 94-207 3-119 (168)
176 KOG4238 Bifunctional ATP sulfu 97.9 1.3E-05 2.9E-10 75.4 4.7 161 88-266 45-220 (627)
177 KOG3327 Thymidylate kinase/ade 97.9 7.2E-05 1.6E-09 64.6 8.6 161 91-270 3-199 (208)
178 PRK00091 miaA tRNA delta(2)-is 97.9 6E-05 1.3E-09 70.4 8.4 36 92-127 3-38 (307)
179 PRK05201 hslU ATP-dependent pr 97.8 4.7E-05 1E-09 73.7 7.5 57 91-148 48-107 (443)
180 PF01591 6PF2K: 6-phosphofruct 97.8 0.0001 2.2E-09 65.7 8.9 56 92-147 11-71 (222)
181 cd02019 NK Nucleoside/nucleoti 97.8 2.3E-05 5E-10 56.8 3.3 23 95-117 1-23 (69)
182 PLN02772 guanylate kinase 97.8 0.00038 8.2E-09 66.9 12.5 26 92-117 134-159 (398)
183 COG1072 CoaA Panthothenate kin 97.7 3.6E-05 7.8E-10 70.3 4.4 28 91-118 80-107 (283)
184 PLN02840 tRNA dimethylallyltra 97.7 7.5E-05 1.6E-09 72.3 6.7 37 91-127 19-55 (421)
185 PHA02244 ATPase-like protein 97.7 6.9E-05 1.5E-09 71.5 6.1 59 67-127 87-153 (383)
186 TIGR00150 HI0065_YjeE ATPase, 97.7 7.8E-05 1.7E-09 61.3 5.6 41 80-120 8-49 (133)
187 KOG0730 AAA+-type ATPase [Post 97.7 0.00032 7E-09 70.6 10.7 53 91-144 466-523 (693)
188 KOG1384 tRNA delta(2)-isopente 97.7 0.00038 8.2E-09 65.0 10.4 130 92-222 6-177 (348)
189 KOG0739 AAA+-type ATPase [Post 97.7 0.00091 2E-08 62.1 12.7 66 68-133 132-208 (439)
190 PLN02748 tRNA dimethylallyltra 97.7 8E-05 1.7E-09 73.2 6.2 37 91-127 20-56 (468)
191 KOG0733 Nuclear AAA ATPase (VC 97.6 0.00029 6.4E-09 70.5 10.0 112 91-202 221-368 (802)
192 TIGR01650 PD_CobS cobaltochela 97.6 9.8E-05 2.1E-09 69.4 6.1 33 90-122 61-93 (327)
193 smart00382 AAA ATPases associa 97.6 5.9E-05 1.3E-09 59.0 3.8 28 93-120 2-29 (148)
194 PF07728 AAA_5: AAA domain (dy 97.6 7.7E-05 1.7E-09 60.6 4.1 28 95-122 1-28 (139)
195 TIGR00174 miaA tRNA isopenteny 97.6 0.00018 3.9E-09 66.6 6.8 33 95-127 1-33 (287)
196 PRK08099 bifunctional DNA-bind 97.6 0.0014 3.1E-08 63.4 13.3 33 91-123 217-249 (399)
197 TIGR02640 gas_vesic_GvpN gas v 97.6 0.00013 2.9E-09 66.3 5.8 42 79-122 9-50 (262)
198 PF05496 RuvB_N: Holliday junc 97.5 9.7E-05 2.1E-09 65.9 4.0 31 93-123 50-80 (233)
199 PRK06761 hypothetical protein; 97.5 0.0001 2.2E-09 68.0 4.1 31 93-123 3-33 (282)
200 cd00009 AAA The AAA+ (ATPases 97.5 0.00025 5.5E-09 56.0 6.0 31 92-122 18-51 (151)
201 TIGR02880 cbbX_cfxQ probable R 97.5 0.00015 3.3E-09 66.8 5.2 42 92-133 57-107 (284)
202 COG1484 DnaC DNA replication p 97.5 9E-05 2E-09 67.3 3.5 99 20-130 37-147 (254)
203 PF03215 Rad17: Rad17 cell cyc 97.4 0.00018 4E-09 71.6 5.6 31 92-122 44-74 (519)
204 TIGR02881 spore_V_K stage V sp 97.4 0.00016 3.5E-09 65.5 4.7 26 92-117 41-66 (261)
205 KOG0744 AAA+-type ATPase [Post 97.4 9.7E-05 2.1E-09 69.0 3.1 30 93-122 177-206 (423)
206 PF13521 AAA_28: AAA domain; P 97.4 0.00013 2.8E-09 61.2 3.1 27 95-122 1-27 (163)
207 KOG1970 Checkpoint RAD17-RFC c 97.4 0.0002 4.4E-09 70.8 4.7 37 86-122 103-139 (634)
208 KOG3078 Adenylate kinase [Nucl 97.3 0.00098 2.1E-08 59.7 8.4 41 92-132 14-54 (235)
209 PRK05342 clpX ATP-dependent pr 97.3 0.00021 4.6E-09 69.3 4.4 34 92-125 107-140 (412)
210 PF13173 AAA_14: AAA domain 97.3 0.00031 6.8E-09 56.7 4.4 38 92-129 1-42 (128)
211 CHL00181 cbbX CbbX; Provisiona 97.3 0.00029 6.3E-09 65.1 4.6 42 92-133 58-108 (287)
212 COG1618 Predicted nucleotide k 97.2 0.00026 5.7E-09 60.0 3.5 28 92-119 4-31 (179)
213 PRK14729 miaA tRNA delta(2)-is 97.2 0.00086 1.9E-08 62.4 7.1 34 93-127 4-37 (300)
214 CHL00195 ycf46 Ycf46; Provisio 97.2 0.00036 7.7E-09 69.1 4.4 35 91-125 257-291 (489)
215 PF02367 UPF0079: Uncharacteri 97.2 0.00048 1E-08 56.0 4.4 37 84-120 5-42 (123)
216 PRK05800 cobU adenosylcobinami 97.2 0.00037 8.1E-09 59.5 3.9 32 93-124 1-34 (170)
217 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00035 7.7E-09 66.4 4.1 28 92-119 77-104 (361)
218 TIGR00382 clpX endopeptidase C 97.2 0.0004 8.6E-09 67.4 4.4 32 93-124 116-147 (413)
219 PRK03992 proteasome-activating 97.2 0.00039 8.4E-09 66.9 4.1 33 92-124 164-196 (389)
220 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.0006 1.3E-08 59.7 5.0 44 84-127 29-77 (226)
221 TIGR01241 FtsH_fam ATP-depende 97.1 0.00069 1.5E-08 67.1 5.8 32 93-124 88-119 (495)
222 PRK10646 ADP-binding protein; 97.1 0.00089 1.9E-08 56.4 5.5 41 79-119 13-54 (153)
223 PRK09087 hypothetical protein; 97.1 0.00054 1.2E-08 61.1 4.1 35 93-127 44-78 (226)
224 TIGR01242 26Sp45 26S proteasom 97.0 0.00063 1.4E-08 64.6 4.4 33 92-124 155-187 (364)
225 PHA02575 1 deoxynucleoside mon 97.0 0.0008 1.7E-08 60.0 4.7 36 94-130 1-37 (227)
226 TIGR00635 ruvB Holliday juncti 97.0 0.0012 2.5E-08 60.9 5.9 29 93-121 30-58 (305)
227 PRK04195 replication factor C 97.0 0.0011 2.4E-08 65.4 5.9 32 93-124 39-70 (482)
228 PTZ00454 26S protease regulato 97.0 0.00072 1.6E-08 65.3 4.4 34 91-124 177-210 (398)
229 PRK08903 DnaA regulatory inact 97.0 0.00092 2E-08 59.0 4.7 38 91-128 40-82 (227)
230 PF03266 NTPase_1: NTPase; In 97.0 0.00075 1.6E-08 57.6 3.7 23 95-117 1-23 (168)
231 COG1223 Predicted ATPase (AAA+ 97.0 0.0032 7E-08 57.5 7.8 55 79-133 128-193 (368)
232 COG2256 MGS1 ATPase related to 96.9 0.00077 1.7E-08 64.6 3.9 33 94-126 49-81 (436)
233 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00087 1.9E-08 53.1 3.6 35 92-128 14-48 (107)
234 PF07726 AAA_3: ATPase family 96.9 0.00052 1.1E-08 56.2 2.4 28 96-123 2-29 (131)
235 PF07724 AAA_2: AAA domain (Cd 96.9 0.00084 1.8E-08 57.4 3.8 27 93-119 3-29 (171)
236 PRK08084 DNA replication initi 96.9 0.00099 2.1E-08 59.6 4.4 35 92-126 44-83 (235)
237 COG1220 HslU ATP-dependent pro 96.9 0.003 6.5E-08 59.6 7.6 36 87-122 44-79 (444)
238 COG5324 Uncharacterized conser 96.9 0.0086 1.9E-07 58.7 10.8 34 94-127 375-408 (758)
239 PRK00080 ruvB Holliday junctio 96.9 0.00093 2E-08 62.5 4.2 32 91-122 49-80 (328)
240 COG0324 MiaA tRNA delta(2)-iso 96.9 0.003 6.4E-08 59.0 7.4 36 92-127 2-37 (308)
241 cd00071 GMPK Guanosine monopho 96.9 0.00077 1.7E-08 55.4 3.1 25 95-119 1-25 (137)
242 PRK12377 putative replication 96.9 0.0023 4.9E-08 58.1 6.4 47 83-129 89-142 (248)
243 PRK08939 primosomal protein Dn 96.9 0.00087 1.9E-08 62.5 3.6 83 48-130 101-198 (306)
244 PTZ00361 26 proteosome regulat 96.9 0.0011 2.3E-08 64.9 4.3 33 91-123 215-247 (438)
245 PF06068 TIP49: TIP49 C-termin 96.9 0.0015 3.3E-08 62.3 5.1 34 90-123 47-82 (398)
246 PRK13342 recombination factor 96.9 0.0015 3.2E-08 63.3 5.2 33 92-124 35-67 (413)
247 COG1222 RPT1 ATP-dependent 26S 96.9 0.0021 4.6E-08 60.9 6.0 43 91-133 183-227 (406)
248 PLN03025 replication factor C 96.8 0.0016 3.5E-08 60.8 5.2 39 79-117 20-58 (319)
249 TIGR01526 nadR_NMN_Atrans nico 96.8 0.0012 2.5E-08 62.2 4.3 38 85-123 155-192 (325)
250 COG1219 ClpX ATP-dependent pro 96.8 0.0011 2.3E-08 62.0 3.9 35 91-125 95-129 (408)
251 PLN00020 ribulose bisphosphate 96.8 0.0014 3.1E-08 62.7 4.8 41 93-133 148-190 (413)
252 KOG3308 Uncharacterized protei 96.8 0.008 1.7E-07 52.8 9.1 35 94-128 5-40 (225)
253 PRK06620 hypothetical protein; 96.8 0.00098 2.1E-08 59.0 3.5 30 94-123 45-74 (214)
254 PF08303 tRNA_lig_kinase: tRNA 96.8 0.00085 1.9E-08 57.0 2.9 32 96-127 2-34 (168)
255 PF13401 AAA_22: AAA domain; P 96.8 0.0011 2.3E-08 52.8 3.3 26 92-117 3-28 (131)
256 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0035 7.7E-08 63.0 7.5 41 93-133 545-587 (802)
257 COG0714 MoxR-like ATPases [Gen 96.8 0.0011 2.4E-08 62.2 3.8 34 89-122 39-72 (329)
258 PRK11784 tRNA 2-selenouridine 96.8 0.013 2.8E-07 55.6 10.9 127 73-202 118-252 (345)
259 PF05729 NACHT: NACHT domain 96.8 0.0013 2.7E-08 54.0 3.6 25 94-118 1-25 (166)
260 PF00910 RNA_helicase: RNA hel 96.8 0.0011 2.3E-08 52.0 2.8 23 96-118 1-23 (107)
261 PRK06893 DNA replication initi 96.8 0.0026 5.6E-08 56.7 5.6 35 91-125 37-76 (229)
262 COG1124 DppF ABC-type dipeptid 96.7 0.0012 2.7E-08 59.3 3.4 26 90-115 30-55 (252)
263 PF01745 IPT: Isopentenyl tran 96.7 0.0013 2.8E-08 58.4 3.4 34 94-127 2-35 (233)
264 CHL00176 ftsH cell division pr 96.7 0.0016 3.4E-08 66.6 4.4 32 93-124 216-247 (638)
265 PRK15455 PrkA family serine pr 96.7 0.0014 3E-08 65.9 3.8 49 70-118 71-128 (644)
266 COG1126 GlnQ ABC-type polar am 96.7 0.0014 3.1E-08 58.2 3.3 24 91-114 26-49 (240)
267 COG0802 Predicted ATPase or ki 96.7 0.0032 7E-08 52.7 5.3 36 84-119 15-51 (149)
268 PF00308 Bac_DnaA: Bacterial d 96.7 0.04 8.7E-07 48.8 12.6 47 84-130 23-78 (219)
269 PHA03136 thymidine kinase; Pro 96.7 0.031 6.8E-07 53.5 12.4 25 186-210 192-217 (378)
270 PF00005 ABC_tran: ABC transpo 96.6 0.0016 3.5E-08 52.4 3.1 27 91-117 9-35 (137)
271 cd03115 SRP The signal recogni 96.6 0.002 4.2E-08 54.4 3.8 33 95-127 2-39 (173)
272 COG4619 ABC-type uncharacteriz 96.6 0.0017 3.6E-08 55.9 3.3 25 91-115 27-51 (223)
273 KOG0734 AAA+-type ATPase conta 96.6 0.0039 8.6E-08 61.8 6.3 39 93-131 337-376 (752)
274 PF13191 AAA_16: AAA ATPase do 96.6 0.0017 3.6E-08 54.6 3.2 29 90-118 21-49 (185)
275 PF13245 AAA_19: Part of AAA d 96.6 0.0027 5.8E-08 47.1 3.7 26 92-117 9-35 (76)
276 PF02224 Cytidylate_kin: Cytid 96.6 0.0046 1E-07 52.2 5.6 70 186-262 80-157 (157)
277 PRK10536 hypothetical protein; 96.6 0.002 4.2E-08 58.8 3.5 57 59-116 37-97 (262)
278 TIGR03689 pup_AAA proteasome A 96.6 0.0019 4.1E-08 64.3 3.5 29 92-120 215-243 (512)
279 PRK12402 replication factor C 96.5 0.0039 8.5E-08 57.8 5.4 40 79-118 22-61 (337)
280 TIGR01243 CDC48 AAA family ATP 96.5 0.0025 5.4E-08 66.2 4.3 42 92-133 486-529 (733)
281 TIGR01166 cbiO cobalt transpor 96.5 0.0023 5.1E-08 54.8 3.5 25 91-115 16-40 (190)
282 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.5 0.0023 5E-08 55.9 3.5 26 92-117 29-54 (218)
283 PF03193 DUF258: Protein of un 96.5 0.0026 5.6E-08 54.0 3.6 33 84-116 26-58 (161)
284 cd01918 HprK_C HprK/P, the bif 96.5 0.003 6.6E-08 52.9 4.0 35 91-126 12-46 (149)
285 TIGR01243 CDC48 AAA family ATP 96.5 0.0024 5.3E-08 66.2 4.1 34 91-124 210-243 (733)
286 PF01078 Mg_chelatase: Magnesi 96.5 0.0027 5.8E-08 56.0 3.8 35 83-118 13-47 (206)
287 TIGR03015 pepcterm_ATPase puta 96.5 0.0026 5.7E-08 57.1 3.9 26 93-118 43-68 (269)
288 TIGR00960 3a0501s02 Type II (G 96.5 0.0024 5.1E-08 55.9 3.5 26 91-116 27-52 (216)
289 TIGR02673 FtsE cell division A 96.5 0.0024 5.3E-08 55.6 3.5 26 91-116 26-51 (214)
290 PRK14086 dnaA chromosomal repl 96.5 0.015 3.2E-07 59.1 9.4 48 84-131 303-359 (617)
291 PRK11331 5-methylcytosine-spec 96.5 0.0023 4.9E-08 62.7 3.5 28 91-118 192-219 (459)
292 cd03292 ABC_FtsE_transporter F 96.5 0.0025 5.4E-08 55.5 3.5 26 91-116 25-50 (214)
293 TIGR02639 ClpA ATP-dependent C 96.5 0.0035 7.6E-08 65.1 5.1 34 84-117 194-227 (731)
294 cd03269 ABC_putative_ATPase Th 96.5 0.0025 5.4E-08 55.5 3.5 26 91-116 24-49 (210)
295 COG0464 SpoVK ATPases of the A 96.5 0.0027 5.8E-08 62.7 4.1 42 92-133 275-318 (494)
296 PRK13695 putative NTPase; Prov 96.5 0.0028 6.1E-08 53.7 3.7 24 94-117 1-24 (174)
297 COG1116 TauB ABC-type nitrate/ 96.5 0.0025 5.5E-08 57.5 3.5 25 91-115 27-51 (248)
298 cd03261 ABC_Org_Solvent_Resist 96.5 0.0025 5.5E-08 56.5 3.5 27 91-117 24-50 (235)
299 cd03225 ABC_cobalt_CbiO_domain 96.5 0.0026 5.6E-08 55.3 3.4 25 92-116 26-50 (211)
300 KOG1969 DNA replication checkp 96.4 0.0025 5.4E-08 65.1 3.7 34 91-124 324-357 (877)
301 COG3839 MalK ABC-type sugar tr 96.4 0.0025 5.3E-08 60.3 3.5 24 91-114 27-50 (338)
302 cd03256 ABC_PhnC_transporter A 96.4 0.0027 5.8E-08 56.4 3.5 26 91-116 25-50 (241)
303 PHA02544 44 clamp loader, smal 96.4 0.0055 1.2E-07 56.6 5.6 44 79-122 28-72 (316)
304 cd03259 ABC_Carb_Solutes_like 96.4 0.0028 6.1E-08 55.3 3.5 25 92-116 25-49 (213)
305 TIGR03608 L_ocin_972_ABC putat 96.4 0.0029 6.3E-08 54.8 3.5 25 92-116 23-47 (206)
306 COG1855 ATPase (PilT family) [ 96.4 0.0034 7.3E-08 61.2 4.2 35 79-118 254-288 (604)
307 cd01130 VirB11-like_ATPase Typ 96.4 0.0033 7.1E-08 54.1 3.8 27 92-118 24-50 (186)
308 cd03262 ABC_HisP_GlnQ_permease 96.4 0.0029 6.4E-08 55.0 3.5 26 91-116 24-49 (213)
309 cd03293 ABC_NrtD_SsuB_transpor 96.4 0.0029 6.3E-08 55.5 3.5 25 92-116 29-53 (220)
310 cd03224 ABC_TM1139_LivF_branch 96.4 0.0027 5.9E-08 55.6 3.3 26 91-116 24-49 (222)
311 PRK10865 protein disaggregatio 96.4 0.004 8.7E-08 65.8 5.0 36 82-117 188-223 (857)
312 TIGR02315 ABC_phnC phosphonate 96.4 0.003 6.4E-08 56.2 3.5 26 91-116 26-51 (243)
313 cd03235 ABC_Metallic_Cations A 96.4 0.0027 5.9E-08 55.3 3.2 26 91-116 23-48 (213)
314 cd03226 ABC_cobalt_CbiO_domain 96.4 0.003 6.6E-08 54.8 3.4 25 92-116 25-49 (205)
315 cd03219 ABC_Mj1267_LivG_branch 96.4 0.0028 6E-08 56.1 3.2 25 92-116 25-49 (236)
316 cd03260 ABC_PstB_phosphate_tra 96.4 0.0031 6.8E-08 55.5 3.5 27 91-117 24-50 (227)
317 cd03258 ABC_MetN_methionine_tr 96.4 0.0031 6.7E-08 55.8 3.5 27 91-117 29-55 (233)
318 cd03263 ABC_subfamily_A The AB 96.4 0.0031 6.7E-08 55.2 3.5 26 91-116 26-51 (220)
319 PF00448 SRP54: SRP54-type pro 96.4 0.0034 7.3E-08 54.8 3.6 35 93-127 1-40 (196)
320 TIGR02211 LolD_lipo_ex lipopro 96.4 0.0032 6.9E-08 55.2 3.5 26 91-116 29-54 (221)
321 KOG0731 AAA+-type ATPase conta 96.4 0.0025 5.5E-08 65.6 3.2 41 93-133 344-386 (774)
322 PRK14962 DNA polymerase III su 96.4 0.0032 6.9E-08 62.2 3.8 27 93-119 36-62 (472)
323 cd03230 ABC_DR_subfamily_A Thi 96.4 0.0033 7.2E-08 53.2 3.5 26 91-116 24-49 (173)
324 cd03229 ABC_Class3 This class 96.4 0.0034 7.3E-08 53.4 3.5 26 91-116 24-49 (178)
325 cd03301 ABC_MalK_N The N-termi 96.4 0.0033 7.1E-08 54.8 3.5 27 91-117 24-50 (213)
326 PF10662 PduV-EutP: Ethanolami 96.3 0.003 6.4E-08 52.6 3.0 22 94-115 2-23 (143)
327 COG2255 RuvB Holliday junction 96.3 0.0033 7.1E-08 58.0 3.6 30 93-122 52-81 (332)
328 cd01394 radB RadB. The archaea 96.3 0.0039 8.5E-08 54.5 3.9 37 90-126 16-57 (218)
329 PRK11034 clpA ATP-dependent Cl 96.3 0.0034 7.3E-08 65.4 4.0 29 95-123 490-518 (758)
330 PRK14961 DNA polymerase III su 96.3 0.0036 7.9E-08 59.6 3.9 27 93-119 38-64 (363)
331 TIGR01978 sufC FeS assembly AT 96.3 0.0034 7.4E-08 55.7 3.4 25 92-116 25-49 (243)
332 cd01128 rho_factor Transcripti 96.3 0.0038 8.1E-08 56.7 3.7 34 86-119 9-42 (249)
333 PRK13541 cytochrome c biogenes 96.3 0.0036 7.9E-08 54.0 3.5 26 92-117 25-50 (195)
334 TIGR02237 recomb_radB DNA repa 96.3 0.0043 9.4E-08 53.8 4.0 36 91-126 10-50 (209)
335 TIGR03410 urea_trans_UrtE urea 96.3 0.0035 7.5E-08 55.3 3.4 26 92-117 25-50 (230)
336 cd03257 ABC_NikE_OppD_transpor 96.3 0.0035 7.6E-08 55.0 3.4 25 92-116 30-54 (228)
337 cd03265 ABC_DrrA DrrA is the A 96.3 0.0037 7.9E-08 54.9 3.5 25 92-116 25-49 (220)
338 PRK11629 lolD lipoprotein tran 96.3 0.0036 7.8E-08 55.5 3.5 25 92-116 34-58 (233)
339 TIGR03864 PQQ_ABC_ATP ABC tran 96.3 0.0036 7.8E-08 55.6 3.5 25 92-116 26-50 (236)
340 cd03232 ABC_PDR_domain2 The pl 96.3 0.0036 7.8E-08 54.0 3.4 24 92-115 32-55 (192)
341 PRK07952 DNA replication prote 96.3 0.0076 1.6E-07 54.5 5.6 46 84-129 88-140 (244)
342 PRK10584 putative ABC transpor 96.3 0.0038 8.2E-08 55.0 3.5 25 92-116 35-59 (228)
343 cd03296 ABC_CysA_sulfate_impor 96.3 0.0037 7.9E-08 55.6 3.5 25 92-116 27-51 (239)
344 PRK11124 artP arginine transpo 96.3 0.0037 8.1E-08 55.6 3.5 26 91-116 26-51 (242)
345 PRK15177 Vi polysaccharide exp 96.3 0.0038 8.2E-08 54.9 3.4 25 91-115 11-35 (213)
346 cd01120 RecA-like_NTPases RecA 96.3 0.0036 7.8E-08 50.9 3.1 22 96-117 2-23 (165)
347 PRK14956 DNA polymerase III su 96.3 0.0038 8.2E-08 61.6 3.7 28 93-120 40-67 (484)
348 cd03218 ABC_YhbG The ABC trans 96.3 0.0039 8.4E-08 55.0 3.5 25 92-116 25-49 (232)
349 PRK14250 phosphate ABC transpo 96.2 0.0039 8.5E-08 55.6 3.5 26 92-117 28-53 (241)
350 cd03247 ABCC_cytochrome_bd The 96.2 0.0042 9.1E-08 52.8 3.5 26 91-116 26-51 (178)
351 COG1136 SalX ABC-type antimicr 96.2 0.0041 8.9E-08 55.6 3.5 24 91-114 29-52 (226)
352 cd03222 ABC_RNaseL_inhibitor T 96.2 0.0039 8.5E-08 53.6 3.3 26 91-116 23-48 (177)
353 PRK10247 putative ABC transpor 96.2 0.0041 8.9E-08 54.9 3.5 26 91-116 31-56 (225)
354 KOG0736 Peroxisome assembly fa 96.2 0.011 2.3E-07 61.0 6.8 41 93-133 705-747 (953)
355 PRK11248 tauB taurine transpor 96.2 0.0041 8.8E-08 56.2 3.5 25 92-116 26-50 (255)
356 PRK14242 phosphate transporter 96.2 0.0042 9E-08 55.7 3.5 26 91-116 30-55 (253)
357 KOG4622 Predicted nucleotide k 96.2 0.066 1.4E-06 47.1 10.7 72 189-274 125-202 (291)
358 PRK11264 putative amino-acid A 96.2 0.0042 9.1E-08 55.5 3.5 26 92-117 28-53 (250)
359 cd03223 ABCD_peroxisomal_ALDP 96.2 0.0045 9.7E-08 52.2 3.5 27 91-117 25-51 (166)
360 PRK00440 rfc replication facto 96.2 0.0076 1.7E-07 55.3 5.3 39 80-118 25-63 (319)
361 cd03266 ABC_NatA_sodium_export 96.2 0.0042 9.2E-08 54.3 3.5 25 92-116 30-54 (218)
362 KOG3062 RNA polymerase II elon 96.2 0.05 1.1E-06 48.8 10.1 25 94-118 2-26 (281)
363 cd03264 ABC_drug_resistance_li 96.2 0.0038 8.2E-08 54.3 3.1 24 92-116 25-48 (211)
364 cd01131 PilT Pilus retraction 96.2 0.0045 9.7E-08 53.9 3.5 24 95-118 3-26 (198)
365 cd03268 ABC_BcrA_bacitracin_re 96.2 0.0044 9.6E-08 53.8 3.5 25 92-116 25-49 (208)
366 COG1120 FepC ABC-type cobalami 96.2 0.0043 9.3E-08 56.5 3.5 37 91-127 26-66 (258)
367 PRK13540 cytochrome c biogenes 96.2 0.0046 9.9E-08 53.6 3.5 25 92-116 26-50 (200)
368 PRK14247 phosphate ABC transpo 96.2 0.0044 9.4E-08 55.5 3.5 26 92-117 28-53 (250)
369 TIGR03771 anch_rpt_ABC anchore 96.2 0.0044 9.5E-08 54.7 3.4 25 92-116 5-29 (223)
370 PRK06835 DNA replication prote 96.2 0.005 1.1E-07 58.1 4.0 39 92-130 182-225 (329)
371 PRK10744 pstB phosphate transp 96.2 0.0044 9.5E-08 56.0 3.5 26 92-117 38-63 (260)
372 cd03234 ABCG_White The White s 96.2 0.0043 9.4E-08 54.7 3.4 27 91-117 31-57 (226)
373 KOG0743 AAA+-type ATPase [Post 96.2 0.0037 8.1E-08 60.7 3.1 31 94-124 236-266 (457)
374 PRK06645 DNA polymerase III su 96.2 0.0078 1.7E-07 60.0 5.4 28 93-120 43-70 (507)
375 PRK09493 glnQ glutamine ABC tr 96.2 0.0046 9.9E-08 55.0 3.5 27 91-117 25-51 (240)
376 cd03246 ABCC_Protease_Secretio 96.2 0.005 1.1E-07 52.1 3.6 26 91-116 26-51 (173)
377 TIGR01184 ntrCD nitrate transp 96.2 0.0047 1E-07 54.8 3.5 26 91-116 9-34 (230)
378 CHL00206 ycf2 Ycf2; Provisiona 96.2 0.0045 9.7E-08 69.2 4.0 39 91-129 1628-1668(2281)
379 KOG0991 Replication factor C, 96.2 0.0064 1.4E-07 54.8 4.3 35 83-117 38-72 (333)
380 TIGR02770 nickel_nikD nickel i 96.2 0.0046 9.9E-08 54.8 3.4 26 91-116 10-35 (230)
381 PRK10908 cell division protein 96.2 0.0048 1E-07 54.2 3.5 25 92-116 27-51 (222)
382 PLN02796 D-glycerate 3-kinase 96.1 0.0048 1E-07 58.5 3.7 27 92-118 99-125 (347)
383 cd03228 ABCC_MRP_Like The MRP 96.1 0.0051 1.1E-07 52.0 3.6 27 91-117 26-52 (171)
384 PRK13341 recombination factor 96.1 0.0074 1.6E-07 62.6 5.4 35 92-126 51-85 (725)
385 cd03216 ABC_Carb_Monos_I This 96.1 0.0051 1.1E-07 51.7 3.5 26 91-116 24-49 (163)
386 cd03215 ABC_Carb_Monos_II This 96.1 0.0048 1.1E-07 52.6 3.4 27 91-117 24-50 (182)
387 TIGR03005 ectoine_ehuA ectoine 96.1 0.0047 1E-07 55.4 3.4 25 92-116 25-49 (252)
388 PF00437 T2SE: Type II/IV secr 96.1 0.0074 1.6E-07 54.7 4.8 40 79-118 111-152 (270)
389 PRK10771 thiQ thiamine transpo 96.1 0.0047 1E-07 54.7 3.4 26 91-116 23-48 (232)
390 PRK14274 phosphate ABC transpo 96.1 0.0048 1E-07 55.6 3.5 27 91-117 36-62 (259)
391 TIGR02323 CP_lyasePhnK phospho 96.1 0.0047 1E-07 55.3 3.4 26 92-117 28-53 (253)
392 PRK10416 signal recognition pa 96.1 0.0051 1.1E-07 57.7 3.8 35 92-126 113-152 (318)
393 CHL00095 clpC Clp protease ATP 96.1 0.0066 1.4E-07 63.9 5.0 34 84-117 191-224 (821)
394 PRK14262 phosphate ABC transpo 96.1 0.0048 1E-07 55.2 3.5 25 92-116 28-52 (250)
395 cd03214 ABC_Iron-Siderophores_ 96.1 0.0052 1.1E-07 52.4 3.5 25 92-116 24-48 (180)
396 cd03254 ABCC_Glucan_exporter_l 96.1 0.005 1.1E-07 54.2 3.5 27 91-117 27-53 (229)
397 cd03233 ABC_PDR_domain1 The pl 96.1 0.0043 9.4E-08 54.0 3.1 27 91-117 31-57 (202)
398 PRK13539 cytochrome c biogenes 96.1 0.0051 1.1E-07 53.6 3.5 25 92-116 27-51 (207)
399 TIGR01189 ccmA heme ABC export 96.1 0.0051 1.1E-07 53.1 3.5 26 91-116 24-49 (198)
400 cd03238 ABC_UvrA The excision 96.1 0.005 1.1E-07 52.9 3.4 24 91-114 19-42 (176)
401 PRK10895 lipopolysaccharide AB 96.1 0.0049 1.1E-07 54.8 3.5 26 92-117 28-53 (241)
402 PF13086 AAA_11: AAA domain; P 96.1 0.0083 1.8E-07 51.8 4.8 29 89-117 12-41 (236)
403 cd03298 ABC_ThiQ_thiamine_tran 96.1 0.0051 1.1E-07 53.5 3.5 26 91-116 22-47 (211)
404 PRK13543 cytochrome c biogenes 96.1 0.0051 1.1E-07 53.9 3.5 26 91-116 35-60 (214)
405 COG3842 PotA ABC-type spermidi 96.1 0.0047 1E-07 58.7 3.4 23 92-114 30-52 (352)
406 PRK14267 phosphate ABC transpo 96.1 0.0049 1.1E-07 55.2 3.5 26 91-116 28-53 (253)
407 cd03251 ABCC_MsbA MsbA is an e 96.1 0.0051 1.1E-07 54.3 3.5 27 91-117 26-52 (234)
408 PRK06921 hypothetical protein; 96.1 0.0078 1.7E-07 55.0 4.8 68 50-117 60-141 (266)
409 PRK11701 phnK phosphonate C-P 96.1 0.005 1.1E-07 55.5 3.5 27 91-117 30-56 (258)
410 cd03295 ABC_OpuCA_Osmoprotecti 96.1 0.0052 1.1E-07 54.8 3.5 27 91-117 25-51 (242)
411 PRK12724 flagellar biosynthesi 96.1 0.0048 1E-07 60.0 3.5 37 92-128 222-264 (432)
412 PRK14255 phosphate ABC transpo 96.1 0.0051 1.1E-07 55.1 3.5 25 92-116 30-54 (252)
413 COG2884 FtsE Predicted ATPase 96.1 0.0049 1.1E-07 53.9 3.2 27 91-117 26-52 (223)
414 PRK04296 thymidine kinase; Pro 96.1 0.0051 1.1E-07 53.2 3.3 25 93-117 2-26 (190)
415 PRK14256 phosphate ABC transpo 96.1 0.0053 1.1E-07 55.1 3.5 26 92-117 29-54 (252)
416 cd03237 ABC_RNaseL_inhibitor_d 96.1 0.0052 1.1E-07 55.4 3.5 26 91-116 23-48 (246)
417 TIGR00972 3a0107s01c2 phosphat 96.1 0.0053 1.1E-07 54.9 3.5 26 91-116 25-50 (247)
418 PF03029 ATP_bind_1: Conserved 96.1 0.0042 9.1E-08 55.9 2.8 22 98-119 1-22 (238)
419 cd03245 ABCC_bacteriocin_expor 96.1 0.0054 1.2E-07 53.7 3.5 26 91-116 28-53 (220)
420 PRK11247 ssuB aliphatic sulfon 96.1 0.0053 1.1E-07 55.7 3.5 27 91-117 36-62 (257)
421 PRK11300 livG leucine/isoleuci 96.1 0.0049 1.1E-07 55.2 3.3 25 92-116 30-54 (255)
422 cd03250 ABCC_MRP_domain1 Domai 96.1 0.0055 1.2E-07 53.1 3.5 26 91-116 29-54 (204)
423 PRK13531 regulatory ATPase Rav 96.1 0.0048 1E-07 61.0 3.4 28 91-118 37-64 (498)
424 PRK00411 cdc6 cell division co 96.1 0.011 2.3E-07 56.4 5.7 27 91-117 53-79 (394)
425 TIGR01277 thiQ thiamine ABC tr 96.1 0.0055 1.2E-07 53.5 3.5 26 91-116 22-47 (213)
426 PRK10733 hflB ATP-dependent me 96.1 0.0056 1.2E-07 62.7 4.0 32 93-124 185-216 (644)
427 PRK14241 phosphate transporter 96.1 0.0054 1.2E-07 55.3 3.5 25 92-116 29-53 (258)
428 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.0056 1.2E-07 50.5 3.3 26 91-116 24-49 (144)
429 cd03252 ABCC_Hemolysin The ABC 96.1 0.0056 1.2E-07 54.3 3.5 27 91-117 26-52 (237)
430 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.1 0.0055 1.2E-07 54.2 3.4 26 91-116 46-71 (224)
431 TIGR02324 CP_lyasePhnL phospho 96.1 0.0057 1.2E-07 53.8 3.5 26 92-117 33-58 (224)
432 KOG0737 AAA+-type ATPase [Post 96.1 0.0048 1E-07 58.6 3.1 33 92-124 126-158 (386)
433 PRK10575 iron-hydroxamate tran 96.0 0.0051 1.1E-07 55.7 3.2 25 92-116 36-60 (265)
434 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.0 0.0057 1.2E-07 54.2 3.5 26 92-117 28-53 (238)
435 PRK05642 DNA replication initi 96.0 0.0058 1.3E-07 54.6 3.6 37 93-129 45-86 (234)
436 PRK14251 phosphate ABC transpo 96.0 0.0058 1.2E-07 54.7 3.5 25 92-116 29-53 (251)
437 TIGR02928 orc1/cdc6 family rep 96.0 0.0099 2.1E-07 55.9 5.3 27 91-117 38-64 (365)
438 PRK13538 cytochrome c biogenes 96.0 0.0058 1.3E-07 53.1 3.5 25 92-116 26-50 (204)
439 PRK14248 phosphate ABC transpo 96.0 0.0057 1.2E-07 55.5 3.5 26 91-116 45-70 (268)
440 cd03248 ABCC_TAP TAP, the Tran 96.0 0.0059 1.3E-07 53.7 3.5 27 91-117 38-64 (226)
441 COG4608 AppF ABC-type oligopep 96.0 0.0055 1.2E-07 56.0 3.4 36 91-126 37-76 (268)
442 PRK14722 flhF flagellar biosyn 96.0 0.0062 1.3E-07 58.4 3.9 37 91-127 135-178 (374)
443 PRK14261 phosphate ABC transpo 96.0 0.0058 1.3E-07 54.8 3.5 24 92-115 31-54 (253)
444 PRK14244 phosphate ABC transpo 96.0 0.006 1.3E-07 54.6 3.5 25 92-116 30-54 (251)
445 COG1224 TIP49 DNA helicase TIP 96.0 0.007 1.5E-07 57.5 4.0 34 89-122 61-96 (450)
446 PRK14269 phosphate ABC transpo 96.0 0.006 1.3E-07 54.5 3.5 25 92-116 27-51 (246)
447 PRK08116 hypothetical protein; 96.0 0.0079 1.7E-07 55.0 4.3 37 93-129 114-155 (268)
448 PRK11831 putative ABC transpor 96.0 0.0059 1.3E-07 55.5 3.4 27 91-117 31-57 (269)
449 PRK14239 phosphate transporter 96.0 0.0061 1.3E-07 54.5 3.4 24 92-115 30-53 (252)
450 PRK13648 cbiO cobalt transport 96.0 0.0061 1.3E-07 55.3 3.5 25 92-116 34-58 (269)
451 TIGR02639 ClpA ATP-dependent C 96.0 0.0061 1.3E-07 63.3 3.9 33 95-127 486-520 (731)
452 PRK15056 manganese/iron transp 96.0 0.006 1.3E-07 55.5 3.4 25 92-116 32-56 (272)
453 PRK14240 phosphate transporter 96.0 0.0062 1.4E-07 54.5 3.5 25 92-116 28-52 (250)
454 TIGR00064 ftsY signal recognit 96.0 0.0067 1.5E-07 55.7 3.7 36 92-127 71-111 (272)
455 PRK13638 cbiO cobalt transport 96.0 0.0058 1.3E-07 55.6 3.3 26 91-116 25-50 (271)
456 PRK14245 phosphate ABC transpo 96.0 0.0063 1.4E-07 54.5 3.5 24 92-115 28-51 (250)
457 cd03253 ABCC_ATM1_transporter 96.0 0.0064 1.4E-07 53.8 3.5 27 91-117 25-51 (236)
458 TIGR01618 phage_P_loop phage n 96.0 0.0051 1.1E-07 54.8 2.8 39 93-133 12-50 (220)
459 PF13555 AAA_29: P-loop contai 96.0 0.0082 1.8E-07 42.9 3.3 23 92-114 22-44 (62)
460 cd03244 ABCC_MRP_domain2 Domai 96.0 0.0066 1.4E-07 53.1 3.5 26 91-116 28-53 (221)
461 PRK14253 phosphate ABC transpo 96.0 0.0065 1.4E-07 54.3 3.5 26 92-117 28-53 (249)
462 PF08477 Miro: Miro-like prote 96.0 0.0075 1.6E-07 47.0 3.5 22 95-116 1-22 (119)
463 PRK13645 cbiO cobalt transport 96.0 0.0062 1.3E-07 55.9 3.5 26 92-117 36-61 (289)
464 PRK14235 phosphate transporter 96.0 0.0065 1.4E-07 55.1 3.6 27 91-117 43-69 (267)
465 CHL00131 ycf16 sulfate ABC tra 96.0 0.0058 1.3E-07 54.7 3.2 24 92-115 32-55 (252)
466 cd03290 ABCC_SUR1_N The SUR do 96.0 0.0067 1.5E-07 53.1 3.5 26 91-116 25-50 (218)
467 cd03369 ABCC_NFT1 Domain 2 of 96.0 0.0069 1.5E-07 52.6 3.5 26 91-116 32-57 (207)
468 cd03267 ABC_NatA_like Similar 96.0 0.0066 1.4E-07 54.0 3.5 26 91-116 45-70 (236)
469 PRK14490 putative bifunctional 95.9 0.0068 1.5E-07 57.9 3.8 29 91-119 3-31 (369)
470 cd03236 ABC_RNaseL_inhibitor_d 95.9 0.0067 1.4E-07 55.0 3.5 27 91-117 24-50 (255)
471 PRK14259 phosphate ABC transpo 95.9 0.0065 1.4E-07 55.3 3.5 25 92-116 38-62 (269)
472 cd03213 ABCG_EPDR ABCG transpo 95.9 0.0066 1.4E-07 52.5 3.4 26 92-117 34-59 (194)
473 PRK14273 phosphate ABC transpo 95.9 0.0067 1.5E-07 54.4 3.5 27 91-117 31-57 (254)
474 cd03294 ABC_Pro_Gly_Bertaine T 95.9 0.0066 1.4E-07 55.2 3.5 27 91-117 48-74 (269)
475 TIGR03499 FlhF flagellar biosy 95.9 0.0072 1.6E-07 55.6 3.8 36 92-127 193-235 (282)
476 PF14532 Sigma54_activ_2: Sigm 95.9 0.0076 1.7E-07 49.1 3.5 38 79-118 9-46 (138)
477 PRK13632 cbiO cobalt transport 95.9 0.0066 1.4E-07 55.2 3.5 27 91-117 33-59 (271)
478 PRK10751 molybdopterin-guanine 95.9 0.0075 1.6E-07 51.8 3.6 27 92-118 5-31 (173)
479 PRK09544 znuC high-affinity zi 95.9 0.0068 1.5E-07 54.7 3.5 26 91-116 28-53 (251)
480 PRK14237 phosphate transporter 95.9 0.0069 1.5E-07 55.0 3.6 26 92-117 45-70 (267)
481 PRK11614 livF leucine/isoleuci 95.9 0.0062 1.3E-07 54.1 3.2 25 92-116 30-54 (237)
482 TIGR03411 urea_trans_UrtD urea 95.9 0.0068 1.5E-07 53.9 3.4 25 92-116 27-51 (242)
483 PRK13649 cbiO cobalt transport 95.9 0.0065 1.4E-07 55.4 3.4 25 92-116 32-56 (280)
484 KOG0738 AAA+-type ATPase [Post 95.9 0.007 1.5E-07 58.0 3.6 31 94-124 246-276 (491)
485 PRK10619 histidine/lysine/argi 95.9 0.0069 1.5E-07 54.5 3.5 26 92-117 30-55 (257)
486 PRK10419 nikE nickel transport 95.9 0.0068 1.5E-07 55.1 3.4 26 91-116 36-61 (268)
487 PRK10418 nikD nickel transport 95.9 0.007 1.5E-07 54.4 3.5 26 91-116 27-52 (254)
488 TIGR02868 CydC thiol reductant 95.9 0.0063 1.4E-07 60.4 3.5 25 91-115 359-383 (529)
489 PF03205 MobB: Molybdopterin g 95.9 0.0084 1.8E-07 49.5 3.7 24 94-117 1-24 (140)
490 PRK14270 phosphate ABC transpo 95.9 0.0073 1.6E-07 54.1 3.5 25 92-116 29-53 (251)
491 PF00931 NB-ARC: NB-ARC domain 95.9 0.01 2.3E-07 53.6 4.6 26 91-116 17-42 (287)
492 PRK13768 GTPase; Provisional 95.9 0.0081 1.8E-07 54.4 3.8 33 94-126 3-40 (253)
493 PRK14272 phosphate ABC transpo 95.9 0.0073 1.6E-07 54.0 3.5 26 92-117 29-54 (252)
494 PRK14260 phosphate ABC transpo 95.9 0.0074 1.6E-07 54.5 3.5 26 92-117 32-57 (259)
495 COG3172 NadR Predicted ATPase/ 95.9 0.33 7.2E-06 41.5 13.1 28 94-121 9-36 (187)
496 PRK13547 hmuV hemin importer A 95.9 0.0071 1.5E-07 55.3 3.4 27 91-117 25-51 (272)
497 PRK09580 sufC cysteine desulfu 95.9 0.0067 1.4E-07 54.1 3.2 25 92-116 26-50 (248)
498 TIGR00968 3a0106s01 sulfate AB 95.9 0.0075 1.6E-07 53.7 3.5 26 91-116 24-49 (237)
499 cd03217 ABC_FeS_Assembly ABC-t 95.9 0.0075 1.6E-07 52.3 3.4 26 91-116 24-49 (200)
500 PRK09984 phosphonate/organopho 95.9 0.0072 1.6E-07 54.6 3.4 27 91-117 28-54 (262)
No 1
>PLN02199 shikimate kinase
Probab=100.00 E-value=2.4e-36 Score=275.95 Aligned_cols=204 Identities=32% Similarity=0.556 Sum_probs=183.6
Q ss_pred ccccCCCcchHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHH-hCCCChHHHHHhhhhh
Q 023493 69 TKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGGESAAKAFRESDEK 147 (281)
Q Consensus 69 ~~~~~~d~~~~~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~-~g~~~i~eif~~~ge~ 147 (281)
+.+.++|+. .||++++++.+.+++.+|+|+|++||||||+|+.||+.+|++|+|+|.++++. .| .++.++|..+|+.
T Consensus 79 ~~~~~~de~-~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G-~sI~eIf~~~GE~ 156 (303)
T PLN02199 79 GSVYPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNG-TSVAEIFVHHGEN 156 (303)
T ss_pred CCCCCCCHH-HHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcC-CCHHHHHHHhCHH
Confidence 344488888 59999999999999999999999999999999999999999999999999997 46 8999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-h---cCCCCC---cC------hHH
Q 023493 148 GYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-D---HSGFPE---SE------VLP 214 (281)
Q Consensus 148 ~fr~~e~~vl~~l~~~~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~---~R~r~~---~~------~~~ 214 (281)
.|++.|.+++.++....++||+||||++..+.||.+|+.+++|||++|++++.+| . ...||. ++ ..+
T Consensus 157 ~FR~~E~e~L~~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~ 236 (303)
T PLN02199 157 FFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFK 236 (303)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHH
Confidence 9999999999999877789999999999999999988889999999999999999 4 234552 11 246
Q ss_pred HHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhhchhh
Q 023493 215 QLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKKKMM 274 (281)
Q Consensus 215 ~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~~~~~ 274 (281)
.+..+|++|.|.|+.||++|+++++|.+|||+||++.+|++++.+|++.+..+++..+-|
T Consensus 237 ~L~~L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~~~~~ 296 (303)
T PLN02199 237 RLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKEETM 296 (303)
T ss_pred HHHHHHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 789999999999999999999999999999999999999999999999999999864433
No 2
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-34 Score=240.73 Aligned_cols=162 Identities=30% Similarity=0.457 Sum_probs=145.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~ 172 (281)
.++|+|+|+|||||||+|+.||+.|+++|+|+|.++++..| ++++++|..+||.+||+.|.+++..+....+.||+|||
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g-~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGG 80 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG-MSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGG 80 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC-cCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCC
Confidence 47899999999999999999999999999999999999999 99999999999999999999999999987789999999
Q ss_pred ceeechhhHHhcc-CCcEEEEEcCHHHHHhh-h-cCCCC---CcChHHHHHHHHHHhhccccC-CcEEEEcCcccccccc
Q 023493 173 GAVQSSANLALLR-HGISLWIDVPPGMVARM-D-HSGFP---ESEVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLGY 245 (281)
Q Consensus 173 g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~-~R~r~---~~~~~~~l~~~~~~r~~~y~~-ad~~Id~~~~a~~l~~ 245 (281)
|+|.++.|+.+|+ ++++|||++|++++.+| . .+.|| ..+..+.++.+|++|.++|+. ||++++.+
T Consensus 81 G~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~a~~~~~~~-------- 152 (172)
T COG0703 81 GAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREVADFIIDTD-------- 152 (172)
T ss_pred ccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHhCcEEecCC--------
Confidence 9999999999998 78999999999999999 4 45566 234446799999999999996 88999853
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q 023493 246 DDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 246 ~dts~~speeva~~Il~~i~~~~ 268 (281)
+.+ ++++.+|++.+....
T Consensus 153 ----~~~-~~v~~~i~~~l~~~~ 170 (172)
T COG0703 153 ----DRS-EEVVEEILEALEGSL 170 (172)
T ss_pred ----CCc-HHHHHHHHHHHHHhc
Confidence 444 999999999887653
No 3
>PRK13948 shikimate kinase; Provisional
Probab=99.97 E-value=1.8e-30 Score=224.08 Aligned_cols=166 Identities=23% Similarity=0.310 Sum_probs=149.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEe
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~ 170 (281)
..+.+|+|+|++||||||+|+.||+.+|++|+|+|.++++.+| ++++++|..+|+.+||+.|.+++..+....+.||++
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g-~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~ 86 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG-KSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISL 86 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence 4678999999999999999999999999999999999999999 999999999999999999999999998778899999
Q ss_pred CCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcCCCCC---cChHHHHHHHHHHhhccccCCcEEEEcCcccccccc
Q 023493 171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPE---SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGY 245 (281)
Q Consensus 171 G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R~r~~---~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~ 245 (281)
|+|++.++.|+..|+ .+.+|||++|++++.+| ..++||. .+....+.++|++|.+.|+.||++|++
T Consensus 87 GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~i~t--------- 157 (182)
T PRK13948 87 GGGTFMHEENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQATIHVST--------- 157 (182)
T ss_pred CCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEEC---------
Confidence 999999999998776 78999999999999999 5445552 234568899999999999889999985
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 246 DDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 246 ~dts~~speeva~~Il~~i~~~~~ 269 (281)
++.++++++++|.+.+..+++
T Consensus 158 ---~~~~~~ei~~~i~~~l~~~~~ 178 (182)
T PRK13948 158 ---DGRRSEEVVEEIVEKLWAWAE 178 (182)
T ss_pred ---CCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999988664
No 4
>PRK13949 shikimate kinase; Provisional
Probab=99.96 E-value=2e-28 Score=208.88 Aligned_cols=157 Identities=23% Similarity=0.360 Sum_probs=138.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCc
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g 173 (281)
+.|+|+|+|||||||+|+.||+.++++++|+|.++++.++ .++.++|.+.|+..|++.|..++.++....++||++|+|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~-~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg 80 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH-KTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG 80 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC-ccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 4799999999999999999999999999999999999998 899999999999999999999999987667899999999
Q ss_pred eeechhhHHhcc-CCcEEEEEcCHHHHHhh-h--cCCCCCc------ChHHHHHHHHHHhhccccCCcEEEEcCcccccc
Q 023493 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-D--HSGFPES------EVLPQLFALYKEMRDGYATADVTVSLQKVASQL 243 (281)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~--~R~r~~~------~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l 243 (281)
++....++.+|+ .+++|||++|++++.+| . .++||.. +....+..+|++|.++|+.||++|++
T Consensus 81 ~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~id~------- 153 (169)
T PRK13949 81 APCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIFNA------- 153 (169)
T ss_pred ccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEEEC-------
Confidence 999988998887 79999999999999999 4 3466631 12346778999999999999999985
Q ss_pred ccCCCCCCCHHHHHHHHHHH
Q 023493 244 GYDDLDAVTTEDMTLEVLKE 263 (281)
Q Consensus 244 ~~~dts~~speeva~~Il~~ 263 (281)
++.++++++.+|++.
T Consensus 154 -----~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 154 -----DKLEDESQIEQLVQR 168 (169)
T ss_pred -----CCCCHHHHHHHHHHh
Confidence 588999999999875
No 5
>PRK00625 shikimate kinase; Provisional
Probab=99.96 E-value=1.6e-27 Score=204.19 Aligned_cols=163 Identities=23% Similarity=0.352 Sum_probs=141.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCC----ChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEE
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE----SAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~----~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa 169 (281)
++|+|+|+|||||||+|+.||+.+|++|+|+|.++++.+| . +++++|..+|+..|++.|.+++..+.. .+.||+
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g-~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs 78 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYH-GALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVA 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhC-CCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEE
Confidence 4799999999999999999999999999999999999888 5 899999999999999999999988864 567999
Q ss_pred eCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcCCCCC-cChHHHHHHHHHHhhccccC-CcEEEEcCcccccccc
Q 023493 170 AGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLGY 245 (281)
Q Consensus 170 ~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R~r~~-~~~~~~l~~~~~~r~~~y~~-ad~~Id~~~~a~~l~~ 245 (281)
+|||.+..++++..|+ .+.+|||++|++++.+| ..|+.+. ......+.+++++|.+.|+. ||++|++++ .
T Consensus 79 ~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~ad~~i~~~~------~ 152 (173)
T PRK00625 79 LGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSIADYIFSLDH------V 152 (173)
T ss_pred CCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHHCCEEEeCCC------c
Confidence 9999999999998886 68999999999999999 7777652 12346788899999999986 999999863 3
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 023493 246 DDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 246 ~dts~~speeva~~Il~~i 264 (281)
.+|++.++.+++.+++..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 153 AETSSESLMRACQSFCTLL 171 (173)
T ss_pred ccCCCCCHHHHHHHHHHHh
Confidence 3578889888888887654
No 6
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.95 E-value=6.3e-27 Score=200.10 Aligned_cols=162 Identities=24% Similarity=0.379 Sum_probs=142.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G 171 (281)
+.++|+|+|++||||||+++.||+.+|++++|+|..+++..| .++.++|...|+..|++.|.+++..+.....+|+++|
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g-~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~g 81 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATG 81 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC-cCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 457899999999999999999999999999999999998888 8899999999999999999999999887778999999
Q ss_pred CceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hc-CCCCC---cChHHHHHHHHHHhhccccC-CcEEEEcCccccccc
Q 023493 172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM-DH-SGFPE---SEVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLG 244 (281)
Q Consensus 172 ~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~-R~r~~---~~~~~~l~~~~~~r~~~y~~-ad~~Id~~~~a~~l~ 244 (281)
+|++..+.++.+|+ .+.+|||++|++++.+| .. ..+|. .+..+.+..++++|.++|+. ||++||+
T Consensus 82 gg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad~~idt-------- 153 (172)
T PRK05057 82 GGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEEIADVTIRT-------- 153 (172)
T ss_pred CchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCEEEEC--------
Confidence 99999999998886 88999999999999999 32 34552 23345688899999999986 9999985
Q ss_pred cCCCCCCCHHHHHHHHHHHHHH
Q 023493 245 YDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 245 ~~dts~~speeva~~Il~~i~~ 266 (281)
++.++++++++|++++.+
T Consensus 154 ----~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 154 ----DDQSAKVVANQIIHMLES 171 (172)
T ss_pred ----CCCCHHHHHHHHHHHHhh
Confidence 589999999999998854
No 7
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.95 E-value=4.1e-27 Score=233.55 Aligned_cols=162 Identities=20% Similarity=0.309 Sum_probs=144.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G 171 (281)
+.+.|+|+|+|||||||+|+.||+.||++|+|+|.++++..| ++++++|.++||.+||+.|.+++.++....+.||+||
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g-~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~G 83 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIG-MSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLG 83 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHC-cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECC
Confidence 567899999999999999999999999999999999999999 9999999999999999999999999876678899999
Q ss_pred CceeechhhHHhc----c-CCcEEEEEcCHHHHHhh-h-cCCCCC--cChHHHHHHHHHHhhccccC-CcEEEEcCcccc
Q 023493 172 NGAVQSSANLALL----R-HGISLWIDVPPGMVARM-D-HSGFPE--SEVLPQLFALYKEMRDGYAT-ADVTVSLQKVAS 241 (281)
Q Consensus 172 ~g~v~~~~~~~~L----~-~~~vV~L~~s~e~l~~R-~-~R~r~~--~~~~~~l~~~~~~r~~~y~~-ad~~Id~~~~a~ 241 (281)
||+++++.|+.+| + .+++|||++|++++.+| . ..+||. .+..+.+.++|++|.+.|+. ||++|++
T Consensus 84 GG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~~Ad~~i~~----- 158 (542)
T PRK14021 84 GGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFRQVANVHVHT----- 158 (542)
T ss_pred CchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhhCCEEEEC-----
Confidence 9999999999865 4 67999999999999999 3 334552 23456889999999999986 9999985
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 242 QLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 242 ~l~~~dts~~speeva~~Il~~i~~ 266 (281)
++.+|++++++|++.+..
T Consensus 159 -------~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 159 -------RGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred -------CCCCHHHHHHHHHHHHHh
Confidence 589999999999999864
No 8
>PRK13946 shikimate kinase; Provisional
Probab=99.95 E-value=1.3e-26 Score=199.77 Aligned_cols=169 Identities=28% Similarity=0.384 Sum_probs=147.7
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEE
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VI 168 (281)
+.+..++|+|+|++||||||+|+.||+.||++|+|+|.++++..| .++.+++..+|+.+|++.|.+++..+....++||
T Consensus 6 ~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g-~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi 84 (184)
T PRK13946 6 AALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAAR-MTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVL 84 (184)
T ss_pred hccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 345778999999999999999999999999999999999998888 8899999999999999999999999987778999
Q ss_pred EeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC-CCC---CcChHHHHHHHHHHhhccccCCcEEEEcCccccc
Q 023493 169 CAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFP---ESEVLPQLFALYKEMRDGYATADVTVSLQKVASQ 242 (281)
Q Consensus 169 a~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R-~r~---~~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~ 242 (281)
++|+|.+..+.++.+|+ .+++|||++|++++.+| ..| ++| ..+..+.+..++++|.+.|..+|++|++
T Consensus 85 ~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i~~------ 158 (184)
T PRK13946 85 ATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEADLTVAS------ 158 (184)
T ss_pred ECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhCCEEEEC------
Confidence 99999888888888886 78999999999999999 443 444 2344567888999999999889999985
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHhh
Q 023493 243 LGYDDLDAVTTEDMTLEVLKEIEKLTRK 270 (281)
Q Consensus 243 l~~~dts~~speeva~~Il~~i~~~~~~ 270 (281)
++.+++++++.|+..+..++..
T Consensus 159 ------~~~~~~~~~~~i~~~i~~~~~~ 180 (184)
T PRK13946 159 ------RDVPKEVMADEVIEALAAYLEK 180 (184)
T ss_pred ------CCCCHHHHHHHHHHHHHHhhcc
Confidence 5899999999999999886543
No 9
>PRK13947 shikimate kinase; Provisional
Probab=99.95 E-value=4.9e-26 Score=192.66 Aligned_cols=157 Identities=25% Similarity=0.438 Sum_probs=137.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCc
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g 173 (281)
++|+|+|+|||||||+|+.||+.||++|+|.|.++++..| .++.++|...|+.+|++.|..+++.+....++||++|+|
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g 80 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTG-MTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGG 80 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcC-CcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCC
Confidence 4699999999999999999999999999999999999888 888899999999999999999999987777899999999
Q ss_pred eeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC-CCC---CcChHHHHHHHHHHhhccccCCcEEEEcCccccccccCC
Q 023493 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFP---ESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDD 247 (281)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R-~r~---~~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~d 247 (281)
++++..++..|+ .+++|||++|++.+.+| ..| ++| ..+....+...+++|.+.|+.+|++|++
T Consensus 81 ~vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt----------- 149 (171)
T PRK13947 81 VVLNPENVVQLRKNGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYDFADYTIDT----------- 149 (171)
T ss_pred CcCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCEEEEC-----------
Confidence 999888887776 78999999999999999 433 444 2345567888889999988888999985
Q ss_pred CCCCCHHHHHHHHHHH
Q 023493 248 LDAVTTEDMTLEVLKE 263 (281)
Q Consensus 248 ts~~speeva~~Il~~ 263 (281)
++.+++++++.|.+.
T Consensus 150 -~~~~~~~i~~~I~~~ 164 (171)
T PRK13947 150 -GDMTIDEVAEEIIKA 164 (171)
T ss_pred -CCCCHHHHHHHHHHH
Confidence 589999999999983
No 10
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.94 E-value=8.1e-27 Score=196.47 Aligned_cols=151 Identities=26% Similarity=0.432 Sum_probs=127.4
Q ss_pred CCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCceeechhhH
Q 023493 102 NNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANL 181 (281)
Q Consensus 102 ~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g~v~~~~~~ 181 (281)
|||||||+|+.||+.||++|+|+|.++++.+| ++++++|...|++.|++.|.+++.++....++||+||||++..+.++
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g-~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~~ 79 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG-MSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEENR 79 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC-CcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHHH
Confidence 79999999999999999999999999999999 99999999999999999999999999987799999999999999999
Q ss_pred Hhcc-CCcEEEEEcCHHHHHhh--hcCCCCC--cCh-HHHHHHHHHHhhccccC-CcEEEEcCccccccccCCCCCCCHH
Q 023493 182 ALLR-HGISLWIDVPPGMVARM--DHSGFPE--SEV-LPQLFALYKEMRDGYAT-ADVTVSLQKVASQLGYDDLDAVTTE 254 (281)
Q Consensus 182 ~~L~-~~~vV~L~~s~e~l~~R--~~R~r~~--~~~-~~~l~~~~~~r~~~y~~-ad~~Id~~~~a~~l~~~dts~~spe 254 (281)
++|+ .+.+|||++|++.+.+| ...+||. ... ...+...+.+|.+.|+. +++++++ ++.+|+
T Consensus 80 ~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a~~~v~~------------~~~~~~ 147 (158)
T PF01202_consen 80 ELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQAADIVVDT------------DGSPPE 147 (158)
T ss_dssp HHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHHHSSEEEET------------SSCHHH
T ss_pred HHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeEEEeC------------CCCCHH
Confidence 9998 89999999999999999 3334552 111 12445555588999985 7888885 467779
Q ss_pred HHHHHHHHHHH
Q 023493 255 DMTLEVLKEIE 265 (281)
Q Consensus 255 eva~~Il~~i~ 265 (281)
+++++|++.|+
T Consensus 148 ~i~~~i~~~l~ 158 (158)
T PF01202_consen 148 EIAEEILEFLK 158 (158)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 11
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.93 E-value=2.5e-24 Score=181.40 Aligned_cols=165 Identities=33% Similarity=0.515 Sum_probs=140.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEe
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~ 170 (281)
.++++|+|+|+|||||||+|+.||+.+|++++|.|.+++...| .++.+++...|+..|++.+..++..+....+.||++
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~ 80 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG-KSIPEIFEEEGEAAFRELEEEVLAELLARHNLVIST 80 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 4678999999999999999999999999999999999999888 888888888899999999988899888766679999
Q ss_pred CCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC-CCCC---cChHHHHHHHHHHhhccccC-CcEEEEcCcccccc
Q 023493 171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPE---SEVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQL 243 (281)
Q Consensus 171 G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R-~r~~---~~~~~~l~~~~~~r~~~y~~-ad~~Id~~~~a~~l 243 (281)
|++++....++..|+ .+++|||++|++.+.+| ..+ +++. ++..+.+...+.++.+.|.. +|++|++
T Consensus 81 g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~idt------- 153 (175)
T PRK00131 81 GGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVET------- 153 (175)
T ss_pred CCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEeC-------
Confidence 989998888888884 77999999999999999 432 3331 23456678888888887775 8999984
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 244 GYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 244 ~~~dts~~speeva~~Il~~i~~~~ 268 (281)
++.+|+++++.|.+.+..+-
T Consensus 154 -----~~~~~~e~~~~I~~~v~~~~ 173 (175)
T PRK00131 154 -----DGRSPEEVVNEILEKLEAAW 173 (175)
T ss_pred -----CCCCHHHHHHHHHHHHHhhc
Confidence 68999999999999998653
No 12
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.92 E-value=1.6e-23 Score=177.63 Aligned_cols=158 Identities=21% Similarity=0.378 Sum_probs=134.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCc
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g 173 (281)
+.|+|+|++||||||+|+.||+.+|++++|.|.+++...| .++.+++...|+..|++.|.+++..+. ....||++|+|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g-~~~~~~~~~~g~~~~~~~e~~~~~~~~-~~~~vi~~ggg 80 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN-MTVAEIVEREGWAGFRARESAALEAVT-APSTVIATGGG 80 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHhc-CCCeEEECCCC
Confidence 5799999999999999999999999999999999999988 889999999999999999988886653 46789999999
Q ss_pred eeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC----CCC---CcChHHHHHHHHHHhhccccC-CcEEEEcCcccccc
Q 023493 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS----GFP---ESEVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQL 243 (281)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R----~r~---~~~~~~~l~~~~~~r~~~y~~-ad~~Id~~~~a~~l 243 (281)
+++...++.+++ ++++|||++|++.+.+| ..| ++| ..+..+.+...+++|.+.|.. ++++||.
T Consensus 81 ~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a~~~Id~------- 153 (171)
T PRK03731 81 IILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVAHHIIDA------- 153 (171)
T ss_pred ccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhCCEEEcC-------
Confidence 999888888886 78999999999999999 433 233 223346677888888888875 7888885
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHH
Q 023493 244 GYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 244 ~~~dts~~speeva~~Il~~i~~ 266 (281)
+.++++++.+|...+.+
T Consensus 154 ------~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 154 ------TQPPSQVVSEILSALAQ 170 (171)
T ss_pred ------CCCHHHHHHHHHHHHhc
Confidence 47999999999988754
No 13
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.91 E-value=3.6e-23 Score=192.32 Aligned_cols=168 Identities=23% Similarity=0.357 Sum_probs=144.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhc-CCCeEEE
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSS-MGRLVVC 169 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~-~~~~VIa 169 (281)
-++.+|+|+|+|||||||+|+.||+.||++|+|.|..+++..| .++.+++...|+..|++.|.+++..+.. ....||+
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G-~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~ 209 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG-LSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLA 209 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 5688999999999999999999999999999999999999998 8999999999999999999998888764 4468999
Q ss_pred eCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcCC--CC---CcChHHHHHHHHHHhhccccCCcEEEEcCccccc
Q 023493 170 AGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSG--FP---ESEVLPQLFALYKEMRDGYATADVTVSLQKVASQ 242 (281)
Q Consensus 170 ~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R~--r~---~~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~ 242 (281)
+|+|++..+.++..+. .+++|||++|++++.+| .+|+ +| ..+..+.+..++..|.++|+.+|++|++
T Consensus 210 ~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~ad~~I~t------ 283 (309)
T PRK08154 210 TGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARADAVVDT------ 283 (309)
T ss_pred CCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEEC------
Confidence 9999888877776654 78999999999999999 4443 33 2334577888999999999999999985
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHhhc
Q 023493 243 LGYDDLDAVTTEDMTLEVLKEIEKLTRKK 271 (281)
Q Consensus 243 l~~~dts~~speeva~~Il~~i~~~~~~~ 271 (281)
++.+++++++.|.+.+..++..+
T Consensus 284 ------~~~s~ee~~~~I~~~l~~~~~~~ 306 (309)
T PRK08154 284 ------SGLTVAQSLARLRELVRPALGLP 306 (309)
T ss_pred ------CCCCHHHHHHHHHHHHHHHhccC
Confidence 58899999999999998877543
No 14
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.90 E-value=5.9e-23 Score=201.34 Aligned_cols=154 Identities=23% Similarity=0.384 Sum_probs=134.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCc
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g 173 (281)
++|+|+|+|||||||+|+.||+.+|++++|+|.++++..| +++.++|.++|+.+|++.|.++++++....+.||++|+|
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g-~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg 79 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREG-RSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG 79 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcC-CCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc
Confidence 4799999999999999999999999999999999999988 999999999999999999999999987667899999999
Q ss_pred eeechhhHHhccCCcEEEEEcCHHHHHhh-hcCCCCC-cChHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCC
Q 023493 174 AVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAV 251 (281)
Q Consensus 174 ~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R~r~~-~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~ 251 (281)
++++..++++++.+.+|||++|++++.+| ..++||. .+..+.+.++|++|.+.|+.. .+|| +++.
T Consensus 80 vv~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~~RPLl~~~~e~l~~L~~~R~~lY~~~-~~ID------------t~~~ 146 (488)
T PRK13951 80 VVIDPENRELLKKEKTLFLYAPPEVLMERVTTENRPLLREGKERIREIWERRKQFYTEF-RGID------------TSKL 146 (488)
T ss_pred cccChHHHHHHhcCeEEEEECCHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHhcc-cEEE------------CCCC
Confidence 99999999988866799999999999999 6667773 223467888999999999864 4676 4689
Q ss_pred CHHHHHHHHH
Q 023493 252 TTEDMTLEVL 261 (281)
Q Consensus 252 speeva~~Il 261 (281)
++++++.+|+
T Consensus 147 s~~e~~~~iv 156 (488)
T PRK13951 147 NEWETTALVV 156 (488)
T ss_pred CHHHHHHHHH
Confidence 9988887773
No 15
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.89 E-value=5.3e-22 Score=164.43 Aligned_cols=142 Identities=34% Similarity=0.491 Sum_probs=120.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCce
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g~ 174 (281)
+|+|+|+|||||||+|+.||+.+|++++|.|.+++...| .++.+++...|+..|+..|.+++..+....+.||++|+|+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~ 79 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAG-MSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA 79 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence 489999999999999999999999999999999999888 7888889888999999998888888887778999998888
Q ss_pred eechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC-CCCC--cChHHHHHHHHHHhhccccC-CcEEEEcC
Q 023493 175 VQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPE--SEVLPQLFALYKEMRDGYAT-ADVTVSLQ 237 (281)
Q Consensus 175 v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R-~r~~--~~~~~~l~~~~~~r~~~y~~-ad~~Id~~ 237 (281)
+....+++.+. .+++|||++|++.+.+| ..| ++|. ....+.+...+.+|.+.|.. +|++|+++
T Consensus 80 i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y~~~ad~~i~~~ 148 (154)
T cd00464 80 VLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLYREVADLTIDTD 148 (154)
T ss_pred cCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcEEEECC
Confidence 88776655544 78999999999999999 544 3442 12225788889999999986 99999864
No 16
>PRK04182 cytidylate kinase; Provisional
Probab=99.73 E-value=2.4e-16 Score=133.58 Aligned_cols=157 Identities=17% Similarity=0.235 Sum_probs=100.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHH---hCCCChHHHHHhhhhhhH---HHHHHHHHHHHh-cCCCe
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA---AGGESAAKAFRESDEKGY---QQAETEVLKQLS-SMGRL 166 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~---~g~~~i~eif~~~ge~~f---r~~e~~vl~~l~-~~~~~ 166 (281)
+.|+|+|++||||||+|+.||+.+|++++|+|+++++. .| .++.+++. .++..+ +..+. .+..+. ..+.+
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g-~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~ 77 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERG-MSLEEFNK-YAEEDPEIDKEIDR-RQLEIAEKEDNV 77 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcC-CCHHHHHH-HhhcCchHHHHHHH-HHHHHHhcCCCE
Confidence 47999999999999999999999999999988876553 34 56655543 333332 22222 233343 33455
Q ss_pred EEEeC-CceeechhhHHhccCCcEEEEEcCHHHHHhh-hcC-CCCCcChHHHHHH-----------HHHHhhccccCCcE
Q 023493 167 VVCAG-NGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLFA-----------LYKEMRDGYATADV 232 (281)
Q Consensus 167 VIa~G-~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l~~-----------~~~~r~~~y~~ad~ 232 (281)
|+... ++++... .++++|||++|++++.+| ..| +++..+....+.. .|..+.+.|..+|+
T Consensus 78 Vi~g~~~~~~~~~------~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~ 151 (180)
T PRK04182 78 VLEGRLAGWMAKD------YADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDL 151 (180)
T ss_pred EEEEeecceEecC------CCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccE
Confidence 55321 2222110 157899999999999999 444 3443222222222 22222233456899
Q ss_pred EEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhhc
Q 023493 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKK 271 (281)
Q Consensus 233 ~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~~ 271 (281)
+||+ ++.+++++++.|.+.+..+...+
T Consensus 152 ~idt------------~~~~~~~~~~~I~~~~~~~~~~~ 178 (180)
T PRK04182 152 VINT------------SRWDPEGVFDIILTAIDKLLKAK 178 (180)
T ss_pred EEEC------------CCCCHHHHHHHHHHHHHHHhccc
Confidence 9985 58999999999999998765543
No 17
>PRK03839 putative kinase; Provisional
Probab=99.69 E-value=2.6e-16 Score=134.61 Aligned_cols=149 Identities=17% Similarity=0.269 Sum_probs=95.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCc
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g 173 (281)
+.|+|+|+|||||||+|+.||+++|++|+|+|+++++. .+...+...++..|+..+..+.+.. .... +|.+|.
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-vIidG~- 73 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK----GIGEEKDDEMEIDFDKLAYFIEEEF-KEKN-VVLDGH- 73 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc----CCcccCChhhhcCHHHHHHHHHHhc-cCCC-EEEEec-
Confidence 46999999999999999999999999999999998653 2233444456666777776655432 2233 344442
Q ss_pred eeechhhHHhccCCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHh--hcccc-C-CcEEEEcCccccccccCCC
Q 023493 174 AVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEM--RDGYA-T-ADVTVSLQKVASQLGYDDL 248 (281)
Q Consensus 174 ~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r--~~~y~-~-ad~~Id~~~~a~~l~~~dt 248 (281)
. ..+...+++|||++|++++.+| ..|+.........+...+.+. ...|. . ..++||+
T Consensus 74 -~-----~~l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~------------ 135 (180)
T PRK03839 74 -L-----SHLLPVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDT------------ 135 (180)
T ss_pred -c-----ccccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC------------
Confidence 1 1122478999999999999999 656532111111111111110 01121 1 3356664
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 023493 249 DAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 249 s~~speeva~~Il~~i~~~ 267 (281)
++.++++++.+|.+.+...
T Consensus 136 ~~~s~eev~~~I~~~l~~~ 154 (180)
T PRK03839 136 TGKTPEEVVEEILELIKSG 154 (180)
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 5789999999999988754
No 18
>PRK14532 adenylate kinase; Provisional
Probab=99.68 E-value=5.5e-16 Score=133.34 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=99.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC-----CChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEE
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~-----~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VI 168 (281)
++|+|+|+|||||||+|+.||+.+|+.++++|+++++.... ..+.+++. .|+..+.+.-..++...... +
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~----~ 75 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLPE----A 75 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHhC----c
Confidence 46999999999999999999999999999999998875320 23444554 35555554433434333221 2
Q ss_pred EeCCceeec-----hhhHH----hcc-----CCcEEEEEcCHHHHHhh-hcC----CCCCcC---hHHHHHHHHHHhh--
Q 023493 169 CAGNGAVQS-----SANLA----LLR-----HGISLWIDVPPGMVARM-DHS----GFPESE---VLPQLFALYKEMR-- 224 (281)
Q Consensus 169 a~G~g~v~~-----~~~~~----~L~-----~~~vV~L~~s~e~l~~R-~~R----~r~~~~---~~~~l~~~~~~r~-- 224 (281)
.+++|++++ ..... ++. .+.+|||++|++++.+| .+| +++... ....+...++++.
T Consensus 76 ~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i 155 (188)
T PRK14532 76 EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPL 155 (188)
T ss_pred CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 234445443 11111 222 45899999999999999 544 344322 2344555555553
Q ss_pred -ccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHH
Q 023493 225 -DGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 225 -~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~ 265 (281)
+.|+..+..+..+ ++.+++++..+|...+.
T Consensus 156 ~~~y~~~~~~~~id-----------~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 156 LPYYAGQGKLTEVD-----------GMGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHHhcCCEEEEE-----------CCCCHHHHHHHHHHHHh
Confidence 3465444444432 35899999999998875
No 19
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.68 E-value=2.4e-16 Score=134.32 Aligned_cols=161 Identities=15% Similarity=0.183 Sum_probs=100.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~ 165 (281)
-+|..|+|+|+|||||||+++.|++.++ +.++|.|.+.+ .++ ... +..............+...+...+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~-~~~-~~~---~~~~~~~~~~~~~~~l~~~l~~~g~ 79 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE-ILG-HYG---YDKQSRIEMALKRAKLAKFLADQGM 79 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh-hcC-CCC---CCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4688999999999999999999999886 67888877644 222 110 0000100001111111222334456
Q ss_pred eEEEeCCcee--echhhHHhccCCcEEEEEcCHHHHHhhhcCCCCCcChHHHHHHHHHHhhcccc-CCcEEEEcCccccc
Q 023493 166 LVVCAGNGAV--QSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQ 242 (281)
Q Consensus 166 ~VIa~G~g~v--~~~~~~~~L~~~~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~~~r~~~y~-~ad~~Id~~~~a~~ 242 (281)
.||+++.+.. ....++..+...++|||++|++++.+|..++.......+.+..++..+.+.|. .||++|+++
T Consensus 80 ~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ad~vI~~~----- 154 (176)
T PRK05541 80 IVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPKADLVIDNS----- 154 (176)
T ss_pred EEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCCCCEEEeCC-----
Confidence 7888776543 22233334445688999999999999943331111112345666677777776 489999963
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 243 LGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 243 l~~~dts~~speeva~~Il~~i~~~ 267 (281)
+..++++++++|.+.+...
T Consensus 155 ------~~~~~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 155 ------CRTSLDEKVDLILNKLKLR 173 (176)
T ss_pred ------CCCCHHHHHHHHHHHHHHh
Confidence 2259999999999888643
No 20
>PRK09169 hypothetical protein; Validated
Probab=99.66 E-value=8.3e-16 Score=166.41 Aligned_cols=144 Identities=11% Similarity=-0.008 Sum_probs=125.2
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEE
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VI 168 (281)
..+.+..|+|+|++|+|||||++.|++.|++.|+|+|..+++..| ++|.++|..+| .|++.|...+..+.. ...||
T Consensus 2106 ~rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~G-rkI~rIFa~eG--~FRe~Eaa~V~Dllr-~~vVL 2181 (2316)
T PRK09169 2106 ERLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIG-KKIARIQALRG--LSPEQAAARVRDALR-WEVVL 2181 (2316)
T ss_pred HHHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhC-CCHHHHHHhcC--chHHHHHHHHHHHhc-CCeEE
Confidence 457788999999999999999999999999999999999999999 99999999999 899999999988876 68999
Q ss_pred EeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh--hcCCCC---CcCh-------HHHHHHHHHHhhccccC-CcEEE
Q 023493 169 CAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM--DHSGFP---ESEV-------LPQLFALYKEMRDGYAT-ADVTV 234 (281)
Q Consensus 169 a~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R--~~R~r~---~~~~-------~~~l~~~~~~r~~~y~~-ad~~I 234 (281)
++|||++..+.++..|+ +|++|||..+.+++.+| ...++| .++. ...+.+++.+|.+.|+. +|++|
T Consensus 2182 STGGGav~~~enr~~L~~~GlvV~L~an~~tl~~Rty~g~NRPLL~~~~~~FEiQFHT~esl~Lk~eRhpLYEqvADl~V 2261 (2316)
T PRK09169 2182 PAEGFGAAVEQARQALGAKGLRVMRINNGFAAPDTTYAGLNVNLRTAAGLDFEIQFHTADSLRTKNKTHKLYEKLQDLEV 2261 (2316)
T ss_pred eCCCCcccCHHHHHHHHHCCEEEEEECCHHHHHHHhccCCCCccccCCCCccchhccHHHHHHHHHHhHHHHHHhcCccc
Confidence 99999999999999887 89999999999999999 333444 2222 14566678889999974 89999
Q ss_pred Ec
Q 023493 235 SL 236 (281)
Q Consensus 235 d~ 236 (281)
++
T Consensus 2262 ~~ 2263 (2316)
T PRK09169 2262 AP 2263 (2316)
T ss_pred cc
Confidence 85
No 21
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.64 E-value=8.3e-15 Score=122.91 Aligned_cols=156 Identities=21% Similarity=0.297 Sum_probs=100.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhhhhhH-HHHHH-HHHHHHhcCCCeEEE
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGY-QQAET-EVLKQLSSMGRLVVC 169 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g--~~~i~eif~~~ge~~f-r~~e~-~vl~~l~~~~~~VIa 169 (281)
+.|.|.|+|||||||+++.||+.+|+++++++.++++.+. ++++.++ .+..+..+ .+.+. .-...++...++|+.
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef-~~~AE~~p~iD~~iD~rq~e~a~~~nvVle 79 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEF-SRYAEEDPEIDKEIDRRQKELAKEGNVVLE 79 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHH-HHHHhcCchhhHHHHHHHHHHHHcCCeEEh
Confidence 4689999999999999999999999999999999877542 2787764 33444332 12221 112233334455553
Q ss_pred eCCceeechhhHHhcc--CCcEEEEEcCHHHHHhh-hcC-CCCCcChHHHH-H---HHHHHhhcccc-------CCcEEE
Q 023493 170 AGNGAVQSSANLALLR--HGISLWIDVPPGMVARM-DHS-GFPESEVLPQL-F---ALYKEMRDGYA-------TADVTV 234 (281)
Q Consensus 170 ~G~g~v~~~~~~~~L~--~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l-~---~~~~~r~~~y~-------~ad~~I 234 (281)
| +-..| ..+ .++.|||.+|.+++++| .+| |.+.++.+... . .....+...|. ..|++|
T Consensus 80 -g-----rLA~W-i~k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVi 152 (179)
T COG1102 80 -G-----RLAGW-IVREYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLVI 152 (179)
T ss_pred -h-----hhHHH-HhccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEE
Confidence 2 11122 223 78999999999999999 554 55533332221 1 12223344554 256777
Q ss_pred EcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 235 SLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 235 d~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
| |+..+|++++.-|...+..+..
T Consensus 153 n------------Ts~~~~~~v~~il~~aid~~~~ 175 (179)
T COG1102 153 N------------TSKWDPEEVFLILLDAIDALSI 175 (179)
T ss_pred e------------cccCCHHHHHHHHHHHHHhhcc
Confidence 7 5799999999999888876644
No 22
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.62 E-value=1.2e-15 Score=152.40 Aligned_cols=152 Identities=16% Similarity=0.247 Sum_probs=102.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCC------ceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHH-HHHHhcC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY------YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEV-LKQLSSM 163 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~------~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~v-l~~l~~~ 163 (281)
-+|..|+|+|+|||||||+|+.|++.|+. .++|.|.+...+.| +..|++.+... +..+...
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~g------------e~~f~~~er~~~~~~l~~~ 457 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSS------------ELGFSKEDRDLNILRIGFV 457 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccC------------CCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999996 89999987554443 11222222111 1111100
Q ss_pred CCeEEEeCCceeec---------hhhHHhcc-CC--cEEEEEcCHHHHHhhhcCCCCCcChHHHHHHHHHHhhcccc--C
Q 023493 164 GRLVVCAGNGAVQS---------SANLALLR-HG--ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--T 229 (281)
Q Consensus 164 ~~~VIa~G~g~v~~---------~~~~~~L~-~~--~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~~~r~~~y~--~ 229 (281)
...++.+|+++++. ..++.+++ .+ ++|||++|++++.+|.+++.......+.+..++..|.++|. .
T Consensus 458 a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~p~~ 537 (568)
T PRK05537 458 ASEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEPPAN 537 (568)
T ss_pred HHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccCCCC
Confidence 11233344444433 34566665 34 58999999999999954443322223567788888999885 4
Q ss_pred CcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 230 ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 230 ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
||++||+ ++.++++++++|++.+..
T Consensus 538 Adl~IDt------------~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 538 PELVIDT------------TNVTPDECAHKILLYLEE 562 (568)
T ss_pred CcEEEEC------------CCCCHHHHHHHHHHHHHH
Confidence 8999985 578999999999998764
No 23
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.61 E-value=3.1e-15 Score=128.93 Aligned_cols=159 Identities=14% Similarity=0.162 Sum_probs=99.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHH----------------
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEV---------------- 156 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~v---------------- 156 (281)
|..|+|+|++||||||+++.|+..++..+++.|..+..... ....+.+...++..++..|...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~ 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPAS-AGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccc-hhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH
Confidence 57899999999999999999999888888887776543322 2222233222334444332221
Q ss_pred -HHHHhcCCCeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhccccCCc-E
Q 023493 157 -LKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATAD-V 232 (281)
Q Consensus 157 -l~~l~~~~~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~y~~ad-~ 232 (281)
+......+..||..|++.+. ......+. ...+|||++|.+++.+| .+|+++.. +.+...+ ++.+.|..+| +
T Consensus 81 ~~~~~l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~---~~i~~rl-~r~~~~~~ad~~ 155 (186)
T PRK10078 81 EIDLWLHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILRQRLENRGRENA---SEINARL-ARAARYQPQDCH 155 (186)
T ss_pred HHHHHHhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCH---HHHHHHH-HHhhhhccCCEE
Confidence 12222334567766553332 23333343 56789999999999999 66665532 2344333 2345566677 5
Q ss_pred EEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhh
Q 023493 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRK 270 (281)
Q Consensus 233 ~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~ 270 (281)
+|++ +.++++++++|.+.+..-...
T Consensus 156 vi~~-------------~~s~ee~~~~i~~~l~~~~~~ 180 (186)
T PRK10078 156 TLNN-------------DGSLRQSVDTLLTLLHLSQKE 180 (186)
T ss_pred EEeC-------------CCCHHHHHHHHHHHHhhcCcc
Confidence 6663 579999999999888654433
No 24
>PRK06762 hypothetical protein; Provisional
Probab=99.60 E-value=2.3e-14 Score=120.78 Aligned_cols=151 Identities=13% Similarity=0.098 Sum_probs=96.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh--CCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEe
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l--~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~ 170 (281)
++.|+|+|+|||||||+|+.|++.+ ++.+++.|.+.....+... ..+....... ..........+..||..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~------~~~~~~~~~~-~~~~~~~~~~g~~vild 74 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKD------GPGNLSIDLI-EQLVRYGLGHCEFVILE 74 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccC------CCCCcCHHHH-HHHHHHHHhCCCEEEEc
Confidence 4789999999999999999999999 5777898888765543110 0011111111 11222233334555544
Q ss_pred CCceeech---hhHHhc-c-C---CcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhccccCCcEEEEcCcccc
Q 023493 171 GNGAVQSS---ANLALL-R-H---GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVAS 241 (281)
Q Consensus 171 G~g~v~~~---~~~~~L-~-~---~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~ 241 (281)
+. .... ..+..+ . . ...|||++|++++.+| ..|++......+.+...|..+++.+ .++.+|++
T Consensus 75 ~~--~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~----- 146 (166)
T PRK06762 75 GI--LNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDTLG-VIGETIFT----- 146 (166)
T ss_pred hh--hccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCCcC-CCCeEEec-----
Confidence 32 1111 112222 2 2 3789999999999999 6676532233567888888887765 36777764
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHH
Q 023493 242 QLGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 242 ~l~~~dts~~speeva~~Il~~i~ 265 (281)
++.++++++++|+..+.
T Consensus 147 -------~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 147 -------DNLSLKDIFDAILTDIG 163 (166)
T ss_pred -------CCCCHHHHHHHHHHHhc
Confidence 57999999999998764
No 25
>PRK14530 adenylate kinase; Provisional
Probab=99.60 E-value=5e-14 Score=124.12 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=74.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhh---------hhhHHHHHHHHHHHHh-
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESD---------EKGYQQAETEVLKQLS- 161 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~g---------e~~fr~~e~~vl~~l~- 161 (281)
.++.|+|+|+|||||||+|+.||+.+|+.++++|+++++..+ .++.++....| .....+....++....
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~-~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQ-MDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhcc-CCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999988664 33333222222 1112223334444443
Q ss_pred cCCCeEEEeCCceeechhhHHhc----cCCcEEEEEcCHHHHHhh-hcC
Q 023493 162 SMGRLVVCAGNGAVQSSANLALL----RHGISLWIDVPPGMVARM-DHS 205 (281)
Q Consensus 162 ~~~~~VIa~G~g~v~~~~~~~~L----~~~~vV~L~~s~e~l~~R-~~R 205 (281)
....+|++ |++....+...| ..+.+|||++|.+++.+| .+|
T Consensus 81 ~~~~~Ild---G~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R 126 (215)
T PRK14530 81 DADGFVLD---GYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGR 126 (215)
T ss_pred cCCCEEEc---CCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCC
Confidence 23456664 455444444443 268999999999999999 444
No 26
>PRK13975 thymidylate kinase; Provisional
Probab=99.59 E-value=1.3e-14 Score=125.23 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=96.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC--CceecCchHH----HHHhCC-----CChHHHHHhhhhhhHHHHHHHHHHHHh
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLV----FEAAGG-----ESAAKAFRESDEKGYQQAETEVLKQLS 161 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~--~~~~d~D~li----~~~~g~-----~~i~eif~~~ge~~fr~~e~~vl~~l~ 161 (281)
++.|+|.|++||||||+++.|++.++ +.+.+.|..+ ++.+.+ ..+..+|...+++.|++++.. +.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~----~~ 77 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEED----LK 77 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH----Hc
Confidence 47899999999999999999999999 4445555433 222211 123335555555555543322 21
Q ss_pred cCCCeEEEe-----------CCceeec---hhhHHhccCCcEEEEEcCHHHHHhh-hcCCCCCc---ChHHHHHHHHHHh
Q 023493 162 SMGRLVVCA-----------GNGAVQS---SANLALLRHGISLWIDVPPGMVARM-DHSGFPES---EVLPQLFALYKEM 223 (281)
Q Consensus 162 ~~~~~VIa~-----------G~g~v~~---~~~~~~L~~~~vV~L~~s~e~l~~R-~~R~r~~~---~~~~~l~~~~~~r 223 (281)
. ..||.. ++|.... ..+...+.++++|||++|++++.+| ..|+++.- +....+...|.++
T Consensus 78 -~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~ 155 (196)
T PRK13975 78 -K-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLEL 155 (196)
T ss_pred -C-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 1 445543 2222110 1111123478999999999999999 66665421 2233455555554
Q ss_pred hc---ccc-CCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 224 RD---GYA-TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 224 ~~---~y~-~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
.. .+. .+.++||+ ++.++++++++|.+.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~Id~------------~~~~~eev~~~I~~~i~~~~ 192 (196)
T PRK13975 156 ANNEKFMPKYGFIVIDT------------TNKSIEEVFNEILNKIKDKI 192 (196)
T ss_pred HhhcccCCcCCEEEEEC------------CCCCHHHHHHHHHHHHHHhC
Confidence 33 122 24577774 47899999999999987653
No 27
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=7.9e-14 Score=116.24 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=102.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchHH-----HHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEE
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV-----FEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li-----~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa 169 (281)
.|+++|++||||||+|++|+++||+.|+|.|++. +++..|.++. +.+.+.+...+...+...+...+..|++
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLn---D~DR~pWL~~i~~~~~~~l~~~q~vVlA 90 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLN---DDDRWPWLKKIAVELRKALASGQGVVLA 90 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCC---cccccHHHHHHHHHHHHHhhcCCeEEEE
Confidence 6889999999999999999999999999999985 3333224332 2334455555555555666666678888
Q ss_pred eCCceeechhhHHhccC--------------CcEEEEEcCHHHHHhh-hcC-CCCCcChHHHHHHHHHHhhcccc-CCc-
Q 023493 170 AGNGAVQSSANLALLRH--------------GISLWIDVPPGMVARM-DHS-GFPESEVLPQLFALYKEMRDGYA-TAD- 231 (281)
Q Consensus 170 ~G~g~v~~~~~~~~L~~--------------~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l~~~~~~r~~~y~-~ad- 231 (281)
|.. +....++.|++ -.+|||.++.|++.+| .+| |.-- ....++++++..++.-. ..|
T Consensus 91 CSa---LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFM--p~~lleSQf~~LE~p~~~e~di 165 (191)
T KOG3354|consen 91 CSA---LKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFM--PADLLESQFATLEAPDADEEDI 165 (191)
T ss_pred hHH---HHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccC--CHHHHHHHHHhccCCCCCccce
Confidence 742 33334444421 1579999999999999 655 4221 12456777776554322 223
Q ss_pred EEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 232 VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 232 ~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
+.|+.+ +.++|++++.|.+.+...
T Consensus 166 v~isv~------------~~~~e~iv~tI~k~~~~~ 189 (191)
T KOG3354|consen 166 VTISVK------------TYSVEEIVDTIVKMVALN 189 (191)
T ss_pred EEEeec------------cCCHHHHHHHHHHHHHhh
Confidence 457753 589999999999877643
No 28
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.2e-13 Score=114.24 Aligned_cols=146 Identities=16% Similarity=0.234 Sum_probs=96.1
Q ss_pred EccCCCCHHHHHHHHHHHhCCceecCchHHH-----HHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCC-CeEEEeCC
Q 023493 99 VGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----EAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG-RLVVCAGN 172 (281)
Q Consensus 99 ~G~~GsGKstvak~La~~l~~~~~d~D~li~-----~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~-~~VIa~G~ 172 (281)
+|.+||||||+|+.||++||+.|+|.|++.. ++..|.++.+ ++.+.+...+. ..+.+..... ..||+|.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~D---dDR~pWL~~l~-~~~~~~~~~~~~~vi~CS- 75 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLND---DDRWPWLEALG-DAAASLAQKNKHVVIACS- 75 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCc---chhhHHHHHHH-HHHHHhhcCCCceEEecH-
Confidence 4999999999999999999999999999853 3333344321 22223222222 2333333322 3566653
Q ss_pred ceeechhhHHhcc---CC-cEEEEEcCHHHHHhh-hcC-CCCCcChHHHHHHHHHHhhccccCCc-EEEEcCcccccccc
Q 023493 173 GAVQSSANLALLR---HG-ISLWIDVPPGMVARM-DHS-GFPESEVLPQLFALYKEMRDGYATAD-VTVSLQKVASQLGY 245 (281)
Q Consensus 173 g~v~~~~~~~~L~---~~-~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l~~~~~~r~~~y~~ad-~~Id~~~~a~~l~~ 245 (281)
.+....++.|+ .+ ..|||+.+.+.+.+| ..| |.-- ....+.++|+..+++-...| ++||.
T Consensus 76 --ALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM--~~~ll~SQfa~LE~P~~de~vi~idi--------- 142 (161)
T COG3265 76 --ALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFM--PASLLDSQFATLEEPGADEDVLTIDI--------- 142 (161)
T ss_pred --HHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCC--CHHHHHHHHHHhcCCCCCCCEEEeeC---------
Confidence 24556677786 23 569999999999999 555 4321 12457778877766543334 56776
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q 023493 246 DDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 246 ~dts~~speeva~~Il~~i~~ 266 (281)
+.++++++.+++.+++.
T Consensus 143 ----~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 143 ----DQPPEEVVAQALAWLKE 159 (161)
T ss_pred ----CCCHHHHHHHHHHHHhc
Confidence 47999999999998874
No 29
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.55 E-value=2.9e-13 Score=113.82 Aligned_cols=151 Identities=15% Similarity=0.215 Sum_probs=90.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhhh-hhHHHHHHHHHHHHh-cCCCeEEE
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDE-KGYQQAETEVLKQLS-SMGRLVVC 169 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g--~~~i~eif~~~ge-~~fr~~e~~vl~~l~-~~~~~VIa 169 (281)
+.|+|+|++||||||+|+.|++.+|++++|.|+++++... +.+...+.....+ ......-...+..+. ....+||.
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi~ 80 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVLE 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEEE
Confidence 4799999999999999999999999999999887766432 1333322211110 011111111233333 33455553
Q ss_pred eCCceeechhhHHhcc--CCcEEEEEcCHHHHHhh-hcC-CCCCcChHHHHHHHHHHhhc----ccc-------CCcEEE
Q 023493 170 AGNGAVQSSANLALLR--HGISLWIDVPPGMVARM-DHS-GFPESEVLPQLFALYKEMRD----GYA-------TADVTV 234 (281)
Q Consensus 170 ~G~g~v~~~~~~~~L~--~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l~~~~~~r~~----~y~-------~ad~~I 234 (281)
|... .+ .+. .+++|||++|++.+.+| .+| +.+.++....+......+.. .|. ..|++|
T Consensus 81 -g~~~-----~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~i 153 (171)
T TIGR02173 81 -SRLA-----GW-IVREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLVI 153 (171)
T ss_pred -eccc-----ce-eecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEE
Confidence 3211 11 112 56899999999999999 444 45544444444332222211 121 357888
Q ss_pred EcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 235 SLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 235 d~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
| |+..++++ ++.|...+
T Consensus 154 ~------------t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 154 N------------TSNWDPNN-VDIILDAL 170 (171)
T ss_pred E------------CCCCCHHH-HHHHHHHh
Confidence 8 46999999 99988765
No 30
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.55 E-value=2.6e-13 Score=113.97 Aligned_cols=149 Identities=11% Similarity=0.082 Sum_probs=94.3
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCceecCchHHHH-----H-hCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEE
Q 023493 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----A-AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (281)
Q Consensus 96 i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~-----~-~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa 169 (281)
|+|+|++||||||+|+.|++.+++.++|.|++... . .| .... ....+.++...+..+...+......||+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~Vi~ 76 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAG-IPLN---DDDRWPWLQNLNDASTAAAAKNKVGIIT 76 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcC-CCCC---hhhHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 57999999999999999999999999999997422 1 22 2211 1223444555444444444434445776
Q ss_pred eCCceeechhhHHhcc-C---CcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhcc-ccCCc-EEEEcCccccc
Q 023493 170 AGNGAVQSSANLALLR-H---GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDG-YATAD-VTVSLQKVASQ 242 (281)
Q Consensus 170 ~G~g~v~~~~~~~~L~-~---~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~-y~~ad-~~Id~~~~a~~ 242 (281)
++. .....+..++ . ..+|||++|++++.+| ..|+... ...+.+..++.+.... +..++ .+||+
T Consensus 77 ~t~---~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~-~~~~~i~~~~~~~~~~~~~e~~~~~id~------ 146 (163)
T TIGR01313 77 CSA---LKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHF-MKADMLESQFAALEEPLADETDVLRVDI------ 146 (163)
T ss_pred ecc---cHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCC-CCHHHHHHHHHHhCCCCCCCCceEEEEC------
Confidence 652 3344444443 2 2569999999999999 6665211 1234566666544332 33334 56775
Q ss_pred cccCCCCCCCHHHHHHHHHHHHH
Q 023493 243 LGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 243 l~~~dts~~speeva~~Il~~i~ 265 (281)
..+++++.+.|.+.+-
T Consensus 147 -------~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 147 -------DQPLEGVEEDCIAVVL 162 (163)
T ss_pred -------CCCHHHHHHHHHHHHh
Confidence 4789999999888763
No 31
>PRK01184 hypothetical protein; Provisional
Probab=99.53 E-value=4.7e-13 Score=114.72 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=91.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHH---HH-----HHHHhc-CC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET---EV-----LKQLSS-MG 164 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~---~v-----l~~l~~-~~ 164 (281)
+.|+|+|+|||||||+++ +++.+|++++++|+++++......++.+....|+..+...+. .+ ...+.. ..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREKGD 80 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcCC
Confidence 579999999999999998 678999999999888766531011111222223222211111 11 112222 12
Q ss_pred CeEEEeCCceeechhhHH----hcc-CCcEEEEEcCHHHHHhh-hcCCCCCc-ChHHHHHHHHHHh-----hccccCCcE
Q 023493 165 RLVVCAGNGAVQSSANLA----LLR-HGISLWIDVPPGMVARM-DHSGFPES-EVLPQLFALYKEM-----RDGYATADV 232 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~----~L~-~~~vV~L~~s~e~l~~R-~~R~r~~~-~~~~~l~~~~~~r-----~~~y~~ad~ 232 (281)
..||..| + ....... .+. ...+||++||.+++.+| ..|+++.+ ...+.+.+..+.. .+.+..||+
T Consensus 81 ~~vvidg--~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ad~ 157 (184)
T PRK01184 81 EVVVIDG--V-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIALADY 157 (184)
T ss_pred CcEEEeC--C-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHhcCE
Confidence 3344333 1 1111122 233 34899999999999999 66766421 1122333222211 113446999
Q ss_pred EEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 233 ~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
+|++ +.+++++..+|.+.+..+..
T Consensus 158 vI~N-------------~~~~~~l~~~v~~~~~~~~~ 181 (184)
T PRK01184 158 MIVN-------------DSTLEEFRARVRKLLERILR 181 (184)
T ss_pred EEeC-------------CCCHHHHHHHHHHHHHHHhc
Confidence 9986 46899999999988876654
No 32
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.53 E-value=5.5e-13 Score=116.86 Aligned_cols=172 Identities=19% Similarity=0.255 Sum_probs=95.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh-----CCCC---hHH---HHHhh-------------hhhh-
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-----GGES---AAK---AFRES-------------DEKG- 148 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~-----g~~~---i~e---if~~~-------------ge~~- 148 (281)
..|.|-||.||||||+||.||++||+.|+|++.+++... .+.+ ... +..+. |+..
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedvs 84 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDVS 84 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchhh
Confidence 689999999999999999999999999999999876531 0011 111 11100 1110
Q ss_pred --HHHHHH-HHHHHHh----------cCCCeEEEeCCceeechhhHH--hcc-CCcEEEEEcCHHHHHhh--hcC-CCCC
Q 023493 149 --YQQAET-EVLKQLS----------SMGRLVVCAGNGAVQSSANLA--LLR-HGISLWIDVPPGMVARM--DHS-GFPE 209 (281)
Q Consensus 149 --fr~~e~-~vl~~l~----------~~~~~VIa~G~g~v~~~~~~~--~L~-~~~vV~L~~s~e~l~~R--~~R-~r~~ 209 (281)
.+..|. ...+.++ ...+.+...++|+|++.++.. .++ ..+.|||++|++++++| ... ....
T Consensus 85 ~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGTvV~PdA~lKiFLtAS~e~RA~RR~~q~~~~g~ 164 (222)
T COG0283 85 EEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGTVVFPDAELKIFLTASPEERAERRYKQLQAKGF 164 (222)
T ss_pred hhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcceECCCCCeEEEEeCCHHHHHHHHHHHHHhccC
Confidence 111110 0111111 000111112233444333332 234 57899999999999998 221 1121
Q ss_pred cChHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 210 SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 210 ~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
....+.+.+-..+|+..- ..-.++.=++|.+..+.||++++.||++++|++++.+.
T Consensus 165 ~~~~e~ll~eI~~RD~~D--~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~~~ 220 (222)
T COG0283 165 SEVFEELLAEIKERDERD--SNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIRQK 220 (222)
T ss_pred cchHHHHHHHHHHhhhcc--ccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHHHh
Confidence 122455555555554321 11122222345556666789999999999999999843
No 33
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.52 E-value=2.2e-13 Score=116.25 Aligned_cols=158 Identities=14% Similarity=0.193 Sum_probs=91.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh-CCCC----hHHHHHhhhhhh-----HHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGES----AAKAFRESDEKG-----YQQAETEVLKQLS 161 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~-g~~~----i~eif~~~ge~~-----fr~~e~~vl~~l~ 161 (281)
+.+.|+|+|+|||||||+++.|++.+|+.+++++++++... ++.. +..++.. |... +...+..+...+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~- 79 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMES-GDLVPLDTVLDLLKDAMVAAL- 79 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHccc-
Confidence 45689999999999999999999999999999998876643 2111 1222221 2110 111111111111
Q ss_pred cCCCeEEEeCCceeechhhHHhc-----cCCcEEEEEcCHHHHHhh-hcCCC----CCcC---hHHHHHHHHHHhhcc--
Q 023493 162 SMGRLVVCAGNGAVQSSANLALL-----RHGISLWIDVPPGMVARM-DHSGF----PESE---VLPQLFALYKEMRDG-- 226 (281)
Q Consensus 162 ~~~~~VIa~G~g~v~~~~~~~~L-----~~~~vV~L~~s~e~l~~R-~~R~r----~~~~---~~~~l~~~~~~r~~~-- 226 (281)
..+..+|..| ..........+ ..+.+|||++|++.+.+| .+|+. .... ....+...+++..+.
T Consensus 80 ~~~~~~i~dg--~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~ 157 (188)
T TIGR01360 80 GTSKGFLIDG--YPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIA 157 (188)
T ss_pred CcCCeEEEeC--CCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 1223334333 22111111122 257899999999999999 55542 2211 223444444444432
Q ss_pred -ccC-CcE-EEEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 227 -YAT-ADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 227 -y~~-ad~-~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
|.. +.+ +||. +.+++++..+|...+..
T Consensus 158 ~y~~~~~~~~id~-------------~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 158 YYETKGKLRKINA-------------EGTVDDVFLQVCTAIDK 187 (188)
T ss_pred HHHhCCCEEEEEC-------------CCCHHHHHHHHHHHHhc
Confidence 442 343 5553 68999999999998864
No 34
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.52 E-value=7e-14 Score=119.03 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=95.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCe
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (281)
+|.+|+|+|+|||||||+|+.|+..+. +.++|.|.+......+... ..+.....++... .+...+...+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~---~~~~r~~~~~~~~-~~a~~~~~~g~~ 78 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGF---SKEDRDTNIRRIG-FVANLLTRHGVI 78 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCC---ChhhHHHHHHHHH-HHHHHHHhCCCE
Confidence 578999999999999999999998873 6778999876554321111 0111222333322 111222223333
Q ss_pred EEEeCCceeechhhHHhcc----CCcEEEEEcCHHHHHhhhcCCCCCcChHHHHHHHHHHhhcccc--CCcEEEEcCccc
Q 023493 167 VVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQKVA 240 (281)
Q Consensus 167 VIa~G~g~v~~~~~~~~L~----~~~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~~~r~~~y~--~ad~~Id~~~~a 240 (281)
|+.. +... ....+..+. ...+|||++|++++.+|..++.......+.+..++.++.+.|. .+|++|++
T Consensus 79 vi~~-~~~~-~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~~---- 152 (175)
T PRK00889 79 VLVS-AISP-YRETREEVRANIGNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECRT---- 152 (175)
T ss_pred EEEe-cCCC-CHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEEC----
Confidence 4433 2222 233343332 3478999999999999943321100001224445567788885 38898875
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 241 SQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 241 ~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
++.++++++++|++.+..
T Consensus 153 --------~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 153 --------DLESLEESVDKVLQKLEE 170 (175)
T ss_pred --------CCCCHHHHHHHHHHHHHH
Confidence 478999999999999863
No 35
>PRK13808 adenylate kinase; Provisional
Probab=99.52 E-value=6.6e-13 Score=124.27 Aligned_cols=160 Identities=12% Similarity=0.157 Sum_probs=94.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC-----CChHHHHHhhhhhhHHHHHHHHHH-HHhc---CC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLK-QLSS---MG 164 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~-----~~i~eif~~~ge~~fr~~e~~vl~-~l~~---~~ 164 (281)
+.|+|+|+|||||||+++.|++.+|+.++++|+++++.... ..+.+++.. |.....+.-..++. .+.. ..
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~-G~lVPdeiv~~li~e~l~~~~~~~ 79 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMAS-GGLVPDEVVVGIISDRIEQPDAAN 79 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccccC
Confidence 46999999999999999999999999999999999765321 223333322 22111121112222 2211 22
Q ss_pred CeEEEeCCceeechhhHH----hc-----cCCcEEEEEcCHHHHHhh-hcC-------C---CCCcChHHHHHH---HHH
Q 023493 165 RLVVCAGNGAVQSSANLA----LL-----RHGISLWIDVPPGMVARM-DHS-------G---FPESEVLPQLFA---LYK 221 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~----~L-----~~~~vV~L~~s~e~l~~R-~~R-------~---r~~~~~~~~l~~---~~~ 221 (281)
.+||+ |++.+..... ++ ..+++|||++|++++.+| ..| + |..++ .+.+.. .|.
T Consensus 80 G~ILD---GFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~-~E~i~kRL~~Y~ 155 (333)
T PRK13808 80 GFILD---GFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDT-PEVLAKRLASYR 155 (333)
T ss_pred CEEEe---CCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCC-HHHHHHHHHHHH
Confidence 34553 3443322222 12 268999999999999999 544 2 22222 222222 222
Q ss_pred Hh----hccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 222 EM----RDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 222 ~r----~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
+. ..+|...+.++.+| ...++|+|.++|+..|..+..
T Consensus 156 ~~t~PLl~~Y~e~~~lv~ID-----------a~~siEEV~eeI~~~L~~~~~ 196 (333)
T PRK13808 156 AQTEPLVHYYSEKRKLLTVD-----------GMMTIDEVTREIGRVLAAVGA 196 (333)
T ss_pred HHhHHHHHHhhccCcEEEEE-----------CCCCHHHHHHHHHHHHHHHhC
Confidence 22 22455443333332 368999999999999997764
No 36
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.52 E-value=7.2e-13 Score=113.11 Aligned_cols=152 Identities=13% Similarity=0.222 Sum_probs=89.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC-CC----hHHHHHhhhhhhHHHHHHHHHHHHhcC--C-Ce
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES----AAKAFRESDEKGYQQAETEVLKQLSSM--G-RL 166 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~-~~----i~eif~~~ge~~fr~~e~~vl~~l~~~--~-~~ 166 (281)
.|+|+|+|||||||+|+.||+++|+.++++++++++.... .. +.+++ ..|.....+....++...... . .+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~~ 79 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADGSKKF 79 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccCCCcE
Confidence 4889999999999999999999999999998888765431 11 22222 223333333333444433221 1 23
Q ss_pred EEEeCCceeechhhHH----hc----cCCcEEEEEcCHHHHHhh-hcCCC----CCcChHHHHHHHHHHhh-------cc
Q 023493 167 VVCAGNGAVQSSANLA----LL----RHGISLWIDVPPGMVARM-DHSGF----PESEVLPQLFALYKEMR-------DG 226 (281)
Q Consensus 167 VIa~G~g~v~~~~~~~----~L----~~~~vV~L~~s~e~l~~R-~~R~r----~~~~~~~~l~~~~~~r~-------~~ 226 (281)
|+ . |++.+..+.. .+ ..+.+|||++|++++.+| .+|+. .. +..+.+.+.+..+. ..
T Consensus 80 vl-D--g~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~d-d~~e~~~~r~~~y~~~~~~i~~~ 155 (183)
T TIGR01359 80 LI-D--GFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVD-DNIESIKKRFRTYNEQTLPVIEH 155 (183)
T ss_pred EE-e--CCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 2 3333322221 22 256899999999999999 55542 32 22233333322221 12
Q ss_pred ccCCc--EEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 227 YATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 227 y~~ad--~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
|+..+ ++||. +.+++++.++|.+.+
T Consensus 156 ~~~~~~~~~Id~-------------~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 156 YENKGKVKEINA-------------EGSVEEVFEDVEKIF 182 (183)
T ss_pred HHhCCCEEEEEC-------------CCCHHHHHHHHHHHh
Confidence 33333 45764 579999999998765
No 37
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.51 E-value=9.5e-14 Score=120.93 Aligned_cols=159 Identities=14% Similarity=0.214 Sum_probs=94.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh-----CCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l-----~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~ 165 (281)
-++..|+|+|++||||||+++.|+..+ +..++|.|.+.....+... +........++.+. .+...+...+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~---~~~~~~~~~~~~l~-~~a~~~~~~G~ 97 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLG---FSDADRKENIRRVG-EVAKLMVDAGL 97 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCC---cCcccHHHHHHHHH-HHHHHHhhCCC
Confidence 478999999999999999999999876 4678899887654332110 00111122232221 12223333445
Q ss_pred eEEEeCCcee--echhhHHhcc-CCc-EEEEEcCHHHHHhhhcCCCCCcChHHHHHHHHHHhhcccc--C-CcEEEEcCc
Q 023493 166 LVVCAGNGAV--QSSANLALLR-HGI-SLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--T-ADVTVSLQK 238 (281)
Q Consensus 166 ~VIa~G~g~v--~~~~~~~~L~-~~~-vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~~~r~~~y~--~-ad~~Id~~~ 238 (281)
.||++..+.- .....+.+++ .++ +|||++|++++.+|..|+.......+.+..++..+.+ |+ . ||++|++
T Consensus 98 ~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~-Y~~p~~ad~~Idt-- 174 (198)
T PRK03846 98 VVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSV-YEAPESPEIHLDT-- 174 (198)
T ss_pred EEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCccccccc-CCCCCCCCEEEEC--
Confidence 5554321110 0111233444 455 7999999999999932321110001223344556666 76 4 7899985
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 239 VASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 239 ~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
++.++++++++|++.+.+
T Consensus 175 ----------~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 175 ----------GEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred ----------CCCCHHHHHHHHHHHHHH
Confidence 578999999999998864
No 38
>PRK02496 adk adenylate kinase; Provisional
Probab=99.50 E-value=1.1e-12 Score=112.52 Aligned_cols=153 Identities=17% Similarity=0.167 Sum_probs=91.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCC-C----hHHHHHhhhhhhHHHHHHHHHHHHhc----CC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-S----AAKAFRESDEKGYQQAETEVLKQLSS----MG 164 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~-~----i~eif~~~ge~~fr~~e~~vl~~l~~----~~ 164 (281)
+.|+|+|+|||||||+++.||+.+|+++++.|+++++..... . +..++ ..|.....+....++..... ..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~g~~~~~~~~~~~l~~~l~~~~~~~ 80 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYM-DKGELVPDQLVLDLVQERLQQPDAAN 80 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHH-HCCCccCHHHHHHHHHHHHhCcCccC
Confidence 569999999999999999999999999999999887754211 1 11122 12322222222233332221 12
Q ss_pred CeEEEeCCceeechhhHH----hc-----cCCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhc-------cc
Q 023493 165 RLVVCAGNGAVQSSANLA----LL-----RHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRD-------GY 227 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~----~L-----~~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~-------~y 227 (281)
.+|+. | ++....... .+ ..+.+|||++|.+++.+| ..|+++. +..+.+.+.+..+.. .|
T Consensus 81 g~vld-G--fPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~d-d~~~~~~~r~~~y~~~~~~v~~~~ 156 (184)
T PRK02496 81 GWILD-G--FPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKD-DTEEVIRRRLEVYREQTAPLIDYY 156 (184)
T ss_pred CEEEe-C--CCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 3 332211111 11 257899999999999999 7777653 222333333333322 34
Q ss_pred cCCc--EEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 228 ATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 228 ~~ad--~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
+... ..||. +.+++++.++|...+
T Consensus 157 ~~~~~~~~Ida-------------~~~~~~V~~~i~~~l 182 (184)
T PRK02496 157 RDRQKLLTIDG-------------NQSVEAVTTELKAAL 182 (184)
T ss_pred HhcCCEEEEEC-------------CCCHHHHHHHHHHHh
Confidence 3222 45664 579999999998776
No 39
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.49 E-value=1.6e-12 Score=128.05 Aligned_cols=156 Identities=17% Similarity=0.186 Sum_probs=98.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh----C-CCCh------HHHHH----------hhh----
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA----G-GESA------AKAFR----------ESD---- 145 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~----g-~~~i------~eif~----------~~g---- 145 (281)
.+++.|.|.|++||||||+++.||+.||+.++|+|.+++... . +.+. ..+.. ..+
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~ 361 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVW 361 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEE
Confidence 377899999999999999999999999999999999876631 0 0111 00000 000
Q ss_pred ---hh---------------------hHHHHHHHHHHHHhcCCCeEEEeCC--ceeechhhHHhcc-CCcEEEEEcCHHH
Q 023493 146 ---EK---------------------GYQQAETEVLKQLSSMGRLVVCAGN--GAVQSSANLALLR-HGISLWIDVPPGM 198 (281)
Q Consensus 146 ---e~---------------------~fr~~e~~vl~~l~~~~~~VIa~G~--g~v~~~~~~~~L~-~~~vV~L~~s~e~ 198 (281)
+. .+|+.-.....++....+ +|..|- |++ .++ .++.|||++|+++
T Consensus 362 ~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~-iV~eGRDigtv-------V~P~AdlKIfL~As~ev 433 (512)
T PRK13477 362 INGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGG-LVAEGRDIGTH-------VFPDAELKIFLTASVEE 433 (512)
T ss_pred eCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCC-EEEEcccceeE-------EcCCCCEEEEEECCHHH
Confidence 00 001000001111111222 222331 222 233 5799999999999
Q ss_pred HHhh--hc-CCCCC-cChHHHHHHHHHHhh---------ccccC-CcEEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 199 VARM--DH-SGFPE-SEVLPQLFALYKEMR---------DGYAT-ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 199 l~~R--~~-R~r~~-~~~~~~l~~~~~~r~---------~~y~~-ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
+++| .. ..++. ....+.+...+.+|. |+|.. ++++||+ +++++++++++|++.+
T Consensus 434 Ra~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDT------------s~lsieeVv~~Il~~i 501 (512)
T PRK13477 434 RARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELIT------------DGLSIEEVVDKIIDLY 501 (512)
T ss_pred HHHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEEC------------CCCCHHHHHHHHHHHH
Confidence 9998 22 23332 222567788888888 88875 5688874 6899999999999998
Q ss_pred HH
Q 023493 265 EK 266 (281)
Q Consensus 265 ~~ 266 (281)
.+
T Consensus 502 ~~ 503 (512)
T PRK13477 502 RD 503 (512)
T ss_pred HH
Confidence 64
No 40
>PLN02200 adenylate kinase family protein
Probab=99.48 E-value=1.4e-12 Score=116.89 Aligned_cols=162 Identities=11% Similarity=0.183 Sum_probs=95.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhhhhhHHHHHHHHHH-HHhc--C
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLK-QLSS--M 163 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~-----i~eif~~~ge~~fr~~e~~vl~-~l~~--~ 163 (281)
.+.+|+|+|+|||||||+|+.||+.+|+.++++++++++.....+ +.+.. ..|...-.+.....+. .+.. .
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~-~~G~~vp~e~~~~~l~~~l~~~~~ 120 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTI-KEGKIVPSEVTVKLIQKEMESSDN 120 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHH-HcCCCCcHHHHHHHHHHHHhcCCC
Confidence 356889999999999999999999999999999998876543111 11111 1122211222122222 2221 1
Q ss_pred CCeEEEeCCceeechhhHHhc------cCCcEEEEEcCHHHHHhh-hcC--CCCCcChHHHHHH---HHHHh----hccc
Q 023493 164 GRLVVCAGNGAVQSSANLALL------RHGISLWIDVPPGMVARM-DHS--GFPESEVLPQLFA---LYKEM----RDGY 227 (281)
Q Consensus 164 ~~~VIa~G~g~v~~~~~~~~L------~~~~vV~L~~s~e~l~~R-~~R--~r~~~~~~~~l~~---~~~~r----~~~y 227 (281)
..+||+ |.+....+...+ ..+.+|||++|++++.+| .+| ++..+ ..+.+.+ .|.+. ...|
T Consensus 121 ~~~ILD---G~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd-~~e~~~~Rl~~y~~~~~pv~~~y 196 (234)
T PLN02200 121 NKFLID---GFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDD-NIDTIKKRLKVFNALNLPVIDYY 196 (234)
T ss_pred CeEEec---CCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 233442 343333332222 267899999999999999 655 34432 2222222 22222 1234
Q ss_pred cCCc--EEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhhc
Q 023493 228 ATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKK 271 (281)
Q Consensus 228 ~~ad--~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~~ 271 (281)
+..+ +.||. +.+++++.+.|.+.+....+.|
T Consensus 197 ~~~~~~~~IDa-------------~~~~eeV~~~v~~~l~~~~~~~ 229 (234)
T PLN02200 197 SKKGKLYTINA-------------VGTVDEIFEQVRPIFAACEAMK 229 (234)
T ss_pred HhcCCEEEEEC-------------CCCHHHHHHHHHHHHHHcCCcc
Confidence 3322 45664 5799999999999998887765
No 41
>PRK14531 adenylate kinase; Provisional
Probab=99.48 E-value=2.1e-12 Score=111.15 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=89.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh-CCCChHHHHH---hhhhhhHHHHHHHHHH-HHhc--CCCe
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFR---ESDEKGYQQAETEVLK-QLSS--MGRL 166 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~-g~~~i~eif~---~~ge~~fr~~e~~vl~-~l~~--~~~~ 166 (281)
+.|+|+|+|||||||+++.||+.+|+.++++++++++.. ++........ ..|...-.+.-..++. .+.. ...+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g~ 82 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGGW 82 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCcE
Confidence 579999999999999999999999999999988886643 2122211111 2232111111111121 2221 2345
Q ss_pred EEEeCCceeechhhHH----hcc-----CCcEEEEEcCHHHHHhh-hcCCCCCcChH---HHHHHHHHHhhc---cccCC
Q 023493 167 VVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHSGFPESEVL---PQLFALYKEMRD---GYATA 230 (281)
Q Consensus 167 VIa~G~g~v~~~~~~~----~L~-----~~~vV~L~~s~e~l~~R-~~R~r~~~~~~---~~l~~~~~~r~~---~y~~a 230 (281)
||+ |++.+..... ++. .+.+|||++|++++.+| ..|+++.+... ..+....+...| .|..-
T Consensus 83 ilD---Gfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~ 159 (183)
T PRK14531 83 LLD---GFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQR 159 (183)
T ss_pred EEe---CCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 552 3443322222 121 36799999999999999 77887643221 222221122222 33322
Q ss_pred c--EEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 231 D--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 231 d--~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
+ .+|| .+.+++++..+|...+
T Consensus 160 ~~~~~id-------------~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 160 GLLQSVE-------------AQGSIEAITERIEKVL 182 (183)
T ss_pred CCEEEEE-------------CCCCHHHHHHHHHHHh
Confidence 2 3455 3579999999998765
No 42
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.47 E-value=8.8e-13 Score=111.94 Aligned_cols=144 Identities=22% Similarity=0.298 Sum_probs=91.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhh--hhH-HHHH--HHHHHHHhcCCCeEE
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE--KGY-QQAE--TEVLKQLSSMGRLVV 168 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge--~~f-r~~e--~~vl~~l~~~~~~VI 168 (281)
|+|.|+|.||+||||+++.|+ .+|+.+++..+++.+ .| . +....+ ..+ .+.+ ...+..+......||
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e-~~-~-----~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Iv 72 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKE-NG-L-----YTEYDELRKSVIVDVDKLRKRLEELLREGSGIV 72 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHh-cC-C-----eeccCCccceEEeeHHHHHHHHHHHhccCCeEe
Confidence 579999999999999999999 899999999887765 22 1 111111 000 1110 111222222233344
Q ss_pred EeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcCCCCCcChH----HHH-HHHHHHhhccccCCcEEEEcCcccc
Q 023493 169 CAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPESEVL----PQL-FALYKEMRDGYATADVTVSLQKVAS 241 (281)
Q Consensus 169 a~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R~r~~~~~~----~~l-~~~~~~r~~~y~~ad~~Id~~~~a~ 241 (281)
. .+...+++ .+++|.|.++++.+.+| ..||++.+... +++ .-.+.+-...+ .+-+.|+
T Consensus 73 d--------~H~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~-~~v~evd------ 137 (180)
T COG1936 73 D--------SHLSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERF-EAVIEVD------ 137 (180)
T ss_pred e--------chhhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc-CceEEEE------
Confidence 3 22233556 79999999999999999 89999854332 222 22233322222 2334555
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 242 QLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 242 ~l~~~dts~~speeva~~Il~~i~~ 266 (281)
|++.+|++++++|.+.+..
T Consensus 138 ------tt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 138 ------TTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred ------CCCCCHHHHHHHHHHHHcc
Confidence 6899999999999999984
No 43
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.45 E-value=2.9e-12 Score=112.91 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=66.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCC-----ChHHHHHhhhhhhHHHHHHHHHH-HHhc---CC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-----SAAKAFRESDEKGYQQAETEVLK-QLSS---MG 164 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~-----~i~eif~~~ge~~fr~~e~~vl~-~l~~---~~ 164 (281)
+.|+|+|+|||||||+|+.||+.+|+.++++++++++..... .+.+++. .|.....+....++. .+.. ..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~-~g~~~p~~~~~~~i~~~l~~~~~~~ 79 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMD-AGELVPDEIVIGLVKERLAQPDCKN 79 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccCccC
Confidence 469999999999999999999999999999998887653311 1222222 232222222233333 2222 12
Q ss_pred CeEEEeCCceeechhhHHhc----c-----CCcEEEEEcCHHHHHhh-hcC
Q 023493 165 RLVVCAGNGAVQSSANLALL----R-----HGISLWIDVPPGMVARM-DHS 205 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~~L----~-----~~~vV~L~~s~e~l~~R-~~R 205 (281)
.+||. |++........+ . .+.+|+|++|.+++.+| ..|
T Consensus 80 g~VlD---GfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R 127 (215)
T PRK00279 80 GFLLD---GFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGR 127 (215)
T ss_pred CEEEe---cCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCC
Confidence 34553 343332222222 1 35899999999999999 544
No 44
>PLN02674 adenylate kinase
Probab=99.45 E-value=3.4e-12 Score=115.01 Aligned_cols=109 Identities=11% Similarity=0.137 Sum_probs=75.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh------CCCChHHHHHhhhhhhHHHHHHHHHHHHhcCC-
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAAKAFRESDEKGYQQAETEVLKQLSSMG- 164 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~------g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~- 164 (281)
..+.|+|+|+|||||+|+|+.||+++|+.++++++++++.. | ..+.+++. .|+..+.+....++.......
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g-~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~~ 107 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG-IKAKEAMD-KGELVSDDLVVGIIDEAMKKPS 107 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhh-HHHHHHHH-cCCccCHHHHHHHHHHHHhCcC
Confidence 35789999999999999999999999999999999998763 3 34555554 577766666655555544321
Q ss_pred ---CeEEEeCCceeechhhHH----hc-----cCCcEEEEEcCHHHHHhh-hcC
Q 023493 165 ---RLVVCAGNGAVQSSANLA----LL-----RHGISLWIDVPPGMVARM-DHS 205 (281)
Q Consensus 165 ---~~VIa~G~g~v~~~~~~~----~L-----~~~~vV~L~~s~e~l~~R-~~R 205 (281)
.+|++ |++....... .+ ..+.+|+|++|.+++.+| ..|
T Consensus 108 ~~~g~ilD---GfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR 158 (244)
T PLN02674 108 CQKGFILD---GFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGR 158 (244)
T ss_pred cCCcEEEe---CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcc
Confidence 23332 3333222222 22 146899999999999999 443
No 45
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.44 E-value=2e-12 Score=116.35 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=94.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEE
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa 169 (281)
.|+|+|+|||||||+|+.|++.++ +.+++.|.+.+.. . .+...++..+++.....+......+..||.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~-~------~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~ 73 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESF-P------VWKEKYEEFIRDSTLYLIKTALKNKYSVIV 73 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHh-H------HhhHHhHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 489999999999999999998873 3456666654332 1 112234445555555556666555566776
Q ss_pred eCCceeech--hhHHhcc----CCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhc---cc--cCCcEEEEcC
Q 023493 170 AGNGAVQSS--ANLALLR----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRD---GY--ATADVTVSLQ 237 (281)
Q Consensus 170 ~G~g~v~~~--~~~~~L~----~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~---~y--~~ad~~Id~~ 237 (281)
.++...... ..+...+ ...+||+++|.+.+.+| ..|+.+.. .+.+..++..+.+ .| +.++++|+.+
T Consensus 74 D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~--~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~ 151 (249)
T TIGR03574 74 DDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIP--NEVIKDMYEKFDEPGTKYSWDLPDLTIDTT 151 (249)
T ss_pred eccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCC--HHHHHHHHHhhCCCCCCCCccCceEEecCC
Confidence 654322111 1112222 23789999999999999 66665421 2345555554432 22 2477888752
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 238 KVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 238 ~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
...+++++++.|++.+..
T Consensus 152 -----------~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 152 -----------KKIDYNEILEEILEISEN 169 (249)
T ss_pred -----------CCCCHHHHHHHHHHHhhc
Confidence 345789999999987754
No 46
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.44 E-value=7.3e-13 Score=112.79 Aligned_cols=165 Identities=16% Similarity=0.293 Sum_probs=97.3
Q ss_pred HHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCchHHHHHhCCCChHHHHH-hhhhhhHHHHHHHH
Q 023493 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFR-ESDEKGYQQAETEV 156 (281)
Q Consensus 83 ~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~li~~~~g~~~i~eif~-~~ge~~fr~~e~~v 156 (281)
...+-...-++..|+|+|.+||||||+|.+|.++| | ..++|.|.+..-+..+.. |. ++..++.|++. +
T Consensus 13 ~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLg----Fs~edR~eniRRva-e- 86 (197)
T COG0529 13 QEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLG----FSREDRIENIRRVA-E- 86 (197)
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCC----CChHHHHHHHHHHH-H-
Confidence 33443344578899999999999999999999877 3 456799998765442121 22 22334455432 2
Q ss_pred HHHHhcCCCeEEEeCCceeechhhH----HhccC--CcEEEEEcCHHHHHhhhcCCCCCcChHHHHHHHHHHhhcccc--
Q 023493 157 LKQLSSMGRLVVCAGNGAVQSSANL----ALLRH--GISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA-- 228 (281)
Q Consensus 157 l~~l~~~~~~VIa~G~g~v~~~~~~----~~L~~--~~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~~~r~~~y~-- 228 (281)
+.+++...+.|+.+.- +......+ ..+.. -+-||++||.+++.+|+.+|........++.. |.--...|+
T Consensus 87 vAkll~daG~iviva~-ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~-fTGid~pYE~P 164 (197)
T COG0529 87 VAKLLADAGLIVIVAF-ISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKN-FTGIDSPYEAP 164 (197)
T ss_pred HHHHHHHCCeEEEEEe-eCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCC-CcCCCCCCCCC
Confidence 3344444444443321 11122223 33442 36699999999999995444331110011111 111123454
Q ss_pred -CCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 229 -TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 229 -~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
++++++++ +..++++.+..|++.+...
T Consensus 165 ~~Pel~l~t------------~~~~vee~v~~i~~~l~~~ 192 (197)
T COG0529 165 ENPELHLDT------------DRNSVEECVEQILDLLKER 192 (197)
T ss_pred CCCeeEecc------------ccCCHHHHHHHHHHHHHhc
Confidence 47888874 5899999999999988653
No 47
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.43 E-value=5.5e-12 Score=107.62 Aligned_cols=154 Identities=13% Similarity=0.063 Sum_probs=86.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcee--cCchHHHHHhCCCChH--HH--HHh--------hhhhhHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAGGESAA--KA--FRE--------SDEKGYQQAETEVL 157 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~--d~D~li~~~~g~~~i~--ei--f~~--------~ge~~fr~~e~~vl 157 (281)
+++.|+|+|+|||||||+|+.|++.++..++ +.|.++....+ .... +- +.. .....|.. -...+
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~~~~ 78 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPL-KCQDAEGGIEFDGDGGVSPGPEFRLLEGA-WYEAV 78 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcCh-hhcccccccccCccCCcccchHHHHHHHH-HHHHH
Confidence 4789999999999999999999999876554 77877654321 0000 00 000 00011211 12234
Q ss_pred HHHhcCCCeEEEeCCceeechhhHH---hcc--CCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhccccCCc
Q 023493 158 KQLSSMGRLVVCAGNGAVQSSANLA---LLR--HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATAD 231 (281)
Q Consensus 158 ~~l~~~~~~VIa~G~g~v~~~~~~~---~L~--~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~y~~ad 231 (281)
..++..+..||.... +......+. .+. .-..|||+||.+++.+| .+|+.... .....+++...+ ....|
T Consensus 79 ~~~l~~G~~VIvD~~-~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~~---~~~~~~~~~~~~-~~~~d 153 (175)
T cd00227 79 AAMARAGANVIADDV-FLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVP---GQARKQARVVHA-GVEYD 153 (175)
T ss_pred HHHHhCCCcEEEeee-ccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCccc---hHHHHHHHHhcC-CCcce
Confidence 444444444444321 111122222 222 23679999999999999 66663321 112222222222 12357
Q ss_pred EEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 232 VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 232 ~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
++||+ +..++++++++|++.+
T Consensus 154 l~iDt------------s~~s~~e~a~~i~~~l 174 (175)
T cd00227 154 LEVDT------------THKTPIECARAIAARV 174 (175)
T ss_pred EEEEC------------CCCCHHHHHHHHHHhc
Confidence 88874 6889999999999875
No 48
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.42 E-value=3e-12 Score=112.55 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=99.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCC-ChHHHHHhhhhhhH---------------HHHH-H
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-SAAKAFRESDEKGY---------------QQAE-T 154 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~-~i~eif~~~ge~~f---------------r~~e-~ 154 (281)
.+..|.|+|.+||||||+++.|++.+|++++|+|.+.++.+... ...++...+|+..+ .+.+ .
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~ 84 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK 84 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence 34689999999999999999999999999999999988876521 23455555555432 1100 0
Q ss_pred HHHHHH-------------hcC-CCeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-h-cCCCCCcChHHHHH
Q 023493 155 EVLKQL-------------SSM-GRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-D-HSGFPESEVLPQLF 217 (281)
Q Consensus 155 ~vl~~l-------------~~~-~~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~-~R~r~~~~~~~~l~ 217 (281)
+.|+.+ ... ...|+... ..+.+.++..-. .+.+|++.||.++..+| . +++.+.++....+.
T Consensus 85 ~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei--pLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~ri~ 162 (204)
T PRK14733 85 KWLEDYLHPVINKEIKKQVKESDTVMTIVDI--PLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAVAFIN 162 (204)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe--chhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 111111 111 11222211 011122211111 57899999999999999 4 44666555555565
Q ss_pred HHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 218 ALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 218 ~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
.++.... .-+.||++|+++ +.+.+++-.++.+.+...
T Consensus 163 ~Q~~~ee-k~~~aD~VI~N~------------g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 163 LQISDKE-REKIADFVIDNT------------ELTDQELESKLITTINEI 199 (204)
T ss_pred hCCCHHH-HHHhCCEEEECc------------CCCHHHHHHHHHHHHHHH
Confidence 5543221 123599999973 338888888888777665
No 49
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.41 E-value=2.6e-12 Score=111.79 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=91.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhhhhhHH----------------HHH-H
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGYQ----------------QAE-T 154 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g--~~~i~eif~~~ge~~fr----------------~~e-~ 154 (281)
..|+|+|++||||||+++.|++ +|++++|+|.+.++.+. +....+++..+|+..+. +.+ .
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 4799999999999999999998 99999999999887653 12223444444432221 000 0
Q ss_pred HHHHHH-------------hcC--CCeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-hcC-CCCCcChHHHHH
Q 023493 155 EVLKQL-------------SSM--GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLF 217 (281)
Q Consensus 155 ~vl~~l-------------~~~--~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l~ 217 (281)
..++++ ... ...|+... ..+.+..+.. ..+.+|++++|++++.+| ..| +.+.++....+.
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~--pll~e~~~~~-~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~ri~ 158 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDI--PLLFENGLEK-LVDRVLVVDAPPETQLERLMARDGLSEEEAEAIIA 158 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe--hHhhcCCchh-hCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 111111 111 12333221 1111111110 158999999999999999 555 444333334444
Q ss_pred HHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 218 ALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 218 ~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
.+.... ..-..+|++|++ +.+++++..++...+.+
T Consensus 159 ~Q~~~~-~~~~~ad~vI~N-------------~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 159 SQMPRE-EKLARADDVIDN-------------NGDLEELRKQVERLLQE 193 (194)
T ss_pred HhCCHH-HHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHh
Confidence 433221 111248999986 46899999888877654
No 50
>PRK06217 hypothetical protein; Validated
Probab=99.41 E-value=6.1e-12 Score=108.14 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=66.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCc
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g 173 (281)
+.|+|+|+|||||||+|+.|++.+|++++|+|++++...+ .+. ...+...++ +..++..+.....+||+ |.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~-~~~----~~~~~~~~~--~~~~~~~~~~~~~~vi~-G~- 72 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTD-PPF----TTKRPPEER--LRLLLEDLRPREGWVLS-GS- 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCC-CCc----cccCCHHHH--HHHHHHHHhcCCCEEEE-cc-
Confidence 5799999999999999999999999999999999875443 211 011111111 22334444444566776 32
Q ss_pred eeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC
Q 023493 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS 205 (281)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R 205 (281)
.... ....+. .+.+|||++|.+++.+| .+|
T Consensus 73 ~~~~--~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R 104 (183)
T PRK06217 73 ALGW--GDPLEPLFDLVVFLTIPPELRLERLRLR 104 (183)
T ss_pred HHHH--HHHHHhhCCEEEEEECCHHHHHHHHHcC
Confidence 2111 111223 78999999999999999 444
No 51
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.40 E-value=1.7e-12 Score=107.73 Aligned_cols=142 Identities=20% Similarity=0.303 Sum_probs=92.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhH--HHHHHHHHHHH---hcCCC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGY--QQAETEVLKQL---SSMGR 165 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~f--r~~e~~vl~~l---~~~~~ 165 (281)
...++|+++|.||+||||+|..||+.+|++|++..+++++. .++..+++++- ---|..++..| +..++
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn-------~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg 77 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKEN-------NLYEGYDEEYKCHILDEDKVLDELEPLMIEGG 77 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhh-------cchhcccccccCccccHHHHHHHHHHHHhcCC
Confidence 34688999999999999999999999999999999988762 22332222211 00133444444 22344
Q ss_pred eEEEeCCceeechhhHHhcc---CCcEEEEEcCHHHHHhh-hcCCCCCc----ChH-HHHHHHHHHhhccccCCcEEEEc
Q 023493 166 LVVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGFPES----EVL-PQLFALYKEMRDGYATADVTVSL 236 (281)
Q Consensus 166 ~VIa~G~g~v~~~~~~~~L~---~~~vV~L~~s~e~l~~R-~~R~r~~~----~~~-~~l~~~~~~r~~~y~~ad~~Id~ 236 (281)
+||.. +.+++++ .++||.|.+|.+++.+| ..||.... +.. +.+.-.+++....|. ++++...
T Consensus 78 ~IVDy--------HgCd~FperwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~-~~iV~eL 148 (176)
T KOG3347|consen 78 NIVDY--------HGCDFFPERWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYS-PKIVVEL 148 (176)
T ss_pred cEEee--------cccCccchhheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcC-Ccceeec
Confidence 44432 2333443 58999999999999999 88887632 222 334455566666665 6678776
Q ss_pred CccccccccCCCCCCCHHHHHHHH
Q 023493 237 QKVASQLGYDDLDAVTTEDMTLEV 260 (281)
Q Consensus 237 ~~~a~~l~~~dts~~speeva~~I 260 (281)
+ ..++|++...|
T Consensus 149 ~------------s~~~Eem~~ni 160 (176)
T KOG3347|consen 149 Q------------SETKEEMESNI 160 (176)
T ss_pred C------------cCCHHHHHHHH
Confidence 4 45667666553
No 52
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.40 E-value=7e-12 Score=109.76 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=94.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhhhh----------------hHHHHH-H
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEK----------------GYQQAE-T 154 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g--~~~i~eif~~~ge~----------------~fr~~e-~ 154 (281)
+.|.|+|.+||||||+++.|++ +|++++|+|.+..+.+. .....++...+|.. .|.+.+ .
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4699999999999999999987 89999999988766543 11123333333331 221111 1
Q ss_pred HHHHHHh----------------cCC-CeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-h-cCCCCCcChHHH
Q 023493 155 EVLKQLS----------------SMG-RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-D-HSGFPESEVLPQ 215 (281)
Q Consensus 155 ~vl~~l~----------------~~~-~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~-~R~r~~~~~~~~ 215 (281)
..++.+. ..+ ..++... .. +.+.++. -..+.+||+++|.+++.+| . ++|++.++....
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~-pl-L~e~g~~-~~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~r 157 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDM-PL-LVEKGLD-RKMDLVVVVDVDVEERVRRLVEKRGLDEDDARRR 157 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEe-ec-eeEcCcc-ccCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 1111111 011 1222111 00 1111110 0157899999999999999 4 446665454455
Q ss_pred HHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 216 LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 216 l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
+..++... .....||++|++ +.+++++..++...++++++
T Consensus 158 i~~Q~~~~-~k~~~ad~vI~N-------------~g~~e~l~~~v~~~~~~~~~ 197 (200)
T PRK14734 158 IAAQIPDD-VRLKAADIVVDN-------------NGTREQLLAQVDGLIAEILS 197 (200)
T ss_pred HHhcCCHH-HHHHhCCEEEEC-------------cCCHHHHHHHHHHHHHHHHh
Confidence 55443321 112359999996 47899999999988877754
No 53
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.39 E-value=1.2e-11 Score=108.67 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=64.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhhhhhHHHHHHHHHH-HHhc----CC
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLK-QLSS----MG 164 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~-----i~eif~~~ge~~fr~~e~~vl~-~l~~----~~ 164 (281)
.|+|+|+|||||||+|+.||+.+|+.++++++++++.....+ +.++.. .|...-.+.-..++. .+.. ..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~-~g~~vp~~~~~~l~~~~i~~~~~~~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYME-KGELVPDEIVNQLVKERLTQNQDNEN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCcccCC
Confidence 389999999999999999999999999999999877543111 122221 222111111122222 2222 12
Q ss_pred CeEEEeCCceeechhhHHhc------cCCcEEEEEcCHHHHHhh-hcC
Q 023493 165 RLVVCAGNGAVQSSANLALL------RHGISLWIDVPPGMVARM-DHS 205 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~~L------~~~~vV~L~~s~e~l~~R-~~R 205 (281)
.+||. |++........+ ..+.+|||++|.+++.+| ..|
T Consensus 80 ~~ilD---GfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R 124 (210)
T TIGR01351 80 GFILD---GFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGR 124 (210)
T ss_pred cEEEe---CCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCC
Confidence 34443 333332222222 257899999999999999 544
No 54
>PRK14528 adenylate kinase; Provisional
Probab=99.39 E-value=1.3e-11 Score=106.75 Aligned_cols=152 Identities=16% Similarity=0.216 Sum_probs=87.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC-CC----hHHHHHhhhhhhHHHHHHHHH-HHHhc---CC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES----AAKAFRESDEKGYQQAETEVL-KQLSS---MG 164 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~-~~----i~eif~~~ge~~fr~~e~~vl-~~l~~---~~ 164 (281)
+.|+|+|+|||||||+++.|++.+|++++++|++++..... .. +..++ ..|...-...-..++ ..+.. ..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~-~~g~lvp~~~~~~~~~~~l~~~~~~~ 80 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYM-DAGDLVPDSVVIGIIKDRIREADCKN 80 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHH-hCCCccCHHHHHHHHHHHHhCcCccC
Confidence 57999999999999999999999999999999998775431 11 11111 112211111111112 22221 12
Q ss_pred CeEEEeCCceeechhhHH----hc-----cCCcEEEEEcCHHHHHhh-hcC----CCCCcChHHHHHHH---H-HHhhc-
Q 023493 165 RLVVCAGNGAVQSSANLA----LL-----RHGISLWIDVPPGMVARM-DHS----GFPESEVLPQLFAL---Y-KEMRD- 225 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~----~L-----~~~~vV~L~~s~e~l~~R-~~R----~r~~~~~~~~l~~~---~-~~r~~- 225 (281)
.+||. |++....... ++ ..+.+|||++|.+++.+| ..| +++.++ .+.+.+- | +...|
T Consensus 81 g~viD---G~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~-~e~i~~Rl~~y~~~~~pv 156 (186)
T PRK14528 81 GFLLD---GFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDN-EATIKNRLDNYNKKTLPL 156 (186)
T ss_pred cEEEe---CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCC-HHHHHHHHHHHHHHhHHH
Confidence 34443 3333222221 22 257999999999999999 544 555432 2222222 2 22222
Q ss_pred --cccCCc--EEEEcCccccccccCCCCCCCHHHHHHHHHHH
Q 023493 226 --GYATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKE 263 (281)
Q Consensus 226 --~y~~ad--~~Id~~~~a~~l~~~dts~~speeva~~Il~~ 263 (281)
.|+.-. .+|| .+.+++++..+|.+.
T Consensus 157 ~~~y~~~~~~~~i~-------------~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 157 LDFYAAQKKLSQVN-------------GVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHHhCCCEEEEE-------------CCCCHHHHHHHHHHh
Confidence 344333 3454 468999999988764
No 55
>PRK14527 adenylate kinase; Provisional
Probab=99.39 E-value=2.2e-11 Score=105.29 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=89.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC-CChHHHHHh---hhhhhHHHHHHHHHHH-Hhc--CC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ESAAKAFRE---SDEKGYQQAETEVLKQ-LSS--MG 164 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~-~~i~eif~~---~ge~~fr~~e~~vl~~-l~~--~~ 164 (281)
+++.|+++|+|||||||+|+.|++++|+.+++.|+++...... ......... .|...-.+.-..++.. +.. ..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~ 84 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPV 84 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCC
Confidence 5789999999999999999999999999999999988765431 122111111 1211111111222222 222 12
Q ss_pred CeEEEeCCceeechhhHH----hcc-----CCcEEEEEcCHHHHHhh-hcCC----CCCcChHHHHHHHHHHh----hc-
Q 023493 165 RLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHSG----FPESEVLPQLFALYKEM----RD- 225 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~----~L~-----~~~vV~L~~s~e~l~~R-~~R~----r~~~~~~~~l~~~~~~r----~~- 225 (281)
.+|++ |++....... .+. .+.+|||++|.+++.+| .+|+ +..+ ..+.+.+-++.+ .+
T Consensus 85 ~~VlD---Gfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd-~~~~~~~R~~~y~~~~~~v 160 (191)
T PRK14527 85 RVIFD---GFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDD-NEETVRRRQQVYREQTQPL 160 (191)
T ss_pred cEEEc---CCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCC-CHHHHHHHHHHHHHHhHHH
Confidence 34443 3443322222 111 35789999999999999 5553 4332 222222222222 22
Q ss_pred --cccCCc--EEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 226 --GYATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 226 --~y~~ad--~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
.|+.-. .+|| .+.+++++..+|...+
T Consensus 161 ~~~y~~~~~~~~id-------------~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 161 VDYYEARGHLKRVD-------------GLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHHhcCCEEEEE-------------CCCCHHHHHHHHHHhh
Confidence 343222 3565 3689999999998765
No 56
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.39 E-value=1.4e-12 Score=125.26 Aligned_cols=159 Identities=19% Similarity=0.152 Sum_probs=96.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHhhhhh----------------hHHHHHH-
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESDEK----------------GYQQAET- 154 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~--~~i~eif~~~ge~----------------~fr~~e~- 154 (281)
..|.|+|++||||||+++.|++ +|++++|+|.+.++.+.. ..+.+++..+|+. .|.+.+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4699999999999999999987 899999999999886641 1234555555544 3332221
Q ss_pred HHHHHHh------------c--CCCeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-h-cCCCCCcChHHHHHH
Q 023493 155 EVLKQLS------------S--MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-D-HSGFPESEVLPQLFA 218 (281)
Q Consensus 155 ~vl~~l~------------~--~~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~-~R~r~~~~~~~~l~~ 218 (281)
..++.+. . ....++..+.. .+.+..+. -..+.+|||++|.+++.+| . .||...++....+..
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eip-LL~E~~~~-~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~ri~~ 158 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIP-LLVESGMA-PLFHLVVVVDADVEVRVRRLVEQRGMAEADARARIAA 158 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEee-eeecCCch-hhCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 1222221 0 11112211111 11111110 0157999999999999999 4 467664333333433
Q ss_pred HHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 219 LYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 219 ~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
++.. .+.-+.||++|++ +.+++++..+|.+.++.++.
T Consensus 159 Q~~~-e~k~~~AD~vIdN-------------~~s~e~l~~~v~~~l~~~~~ 195 (395)
T PRK03333 159 QASD-EQRRAVADVWLDN-------------SGTPDELVEAVRALWADRLL 195 (395)
T ss_pred cCCh-HHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHHHHh
Confidence 2211 1112258999996 57899999999988877654
No 57
>PRK08356 hypothetical protein; Provisional
Probab=99.38 E-value=2.6e-11 Score=105.35 Aligned_cols=155 Identities=14% Similarity=0.205 Sum_probs=90.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC--C--------------ChHHHHHhhhhhhHHH---HH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--E--------------SAAKAFRESDEKGYQQ---AE 153 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~--~--------------~i~eif~~~ge~~fr~---~e 153 (281)
.+.|+|+|+|||||||+|+.|++ +|+.++.+++.+.+.... . ...+ +-+.|.. ++. .+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~e~g~~-~~~~yG~~ 81 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTREN-LIELGRY-LKEKYGED 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhcccccc-HHHHHHH-HHHhcCcH
Confidence 46799999999999999999964 899998887643221100 0 0001 1111111 110 01
Q ss_pred ---HHHHHHHhcCCCeEEEeCCceeechhhHHhcc--CCcEEEEEcCHHHHHhh-hcCCCCCc---ChHHHHHHHHHHhh
Q 023493 154 ---TEVLKQLSSMGRLVVCAGNGAVQSSANLALLR--HGISLWIDVPPGMVARM-DHSGFPES---EVLPQLFALYKEMR 224 (281)
Q Consensus 154 ---~~vl~~l~~~~~~VIa~G~g~v~~~~~~~~L~--~~~vV~L~~s~e~l~~R-~~R~r~~~---~~~~~l~~~~~~r~ 224 (281)
..++..+..... ++-. |+ ....++..++ .+.+|||++|++++.+| ..|+...+ ...+.+.+.+..+.
T Consensus 82 ~~~~~~~~~~~~~~~-ivid--G~-r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~ 157 (195)
T PRK08356 82 ILIRLAVDKKRNCKN-IAID--GV-RSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEE 157 (195)
T ss_pred HHHHHHHHHhccCCe-EEEc--Cc-CCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 122333322222 3333 34 3344554454 46899999999999999 66654311 12344444444333
Q ss_pred ccc------cCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 225 DGY------ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 225 ~~y------~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
..| +.||++|++ +.+.++++.+|.+.+..+
T Consensus 158 ~l~~~~~~~~~aD~vI~N-------------~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 158 KLYHTTKLKDKADFVIVN-------------EGTLEELRKKVEEILREL 193 (195)
T ss_pred HhhhhhhHHHhCcEEEEC-------------CCCHHHHHHHHHHHHHHh
Confidence 222 249999975 479999999999888764
No 58
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.38 E-value=4.3e-12 Score=108.19 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=86.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc----eecCchHH------HHHhCCCChHHHHHhhhhhhH----------HHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYY----YFDSDSLV------FEAAGGESAAKAFRESDEKGY----------QQA 152 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~----~~d~D~li------~~~~g~~~i~eif~~~ge~~f----------r~~ 152 (281)
|..|+|+|++||||||+++.|+..++.. +...+--. +.... .+..+++...+...| ...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIA-LSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccc-cCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 4679999999999999999999987642 21110000 00001 122222221111101 000
Q ss_pred HHHHHHHHhcCCCeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhcccc--C
Q 023493 153 ETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA--T 229 (281)
Q Consensus 153 e~~vl~~l~~~~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~y~--~ 229 (281)
...+......+..||.+|++.+. ...+..+....+|||++|.+++.+| ..|+++.. +.+...+. +.+.|. .
T Consensus 80 -~~~i~~~~~~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~---~~~~~rl~-~~~~~~~~~ 153 (179)
T TIGR02322 80 -PAEIDQWLEAGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAARGRESR---EEIEERLA-RSARFAAAP 153 (179)
T ss_pred -hHHHHHHHhcCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHcCCCCH---HHHHHHHH-HHhhccccc
Confidence 11233333445667777765432 2223333456899999999999999 77776532 23333332 334443 4
Q ss_pred CcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHH
Q 023493 230 ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 230 ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~ 265 (281)
+++++.. ++.++++++.+|.+.+.
T Consensus 154 ~~~~vi~------------~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 154 ADVTTID------------NSGSLEVAGETLLRLLR 177 (179)
T ss_pred CCEEEEe------------CCCCHHHHHHHHHHHHc
Confidence 7776332 25799999999998875
No 59
>PRK08233 hypothetical protein; Provisional
Probab=99.36 E-value=1.3e-11 Score=104.84 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=83.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-CceecCchHHHHHhCCCChHHHHHhhhhh----hHHHHHHHHHHHHhcCC--
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSLVFEAAGGESAAKAFRESDEK----GYQQAETEVLKQLSSMG-- 164 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~-~~~~d~D~li~~~~g~~~i~eif~~~ge~----~fr~~e~~vl~~l~~~~-- 164 (281)
++..|+|.|+|||||||+|+.|++.++ ...+..|.+...... ..+..+... +.. ..... ...+..+....
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~~~~~ 78 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCP-EDICKWIDK-GANYSEWVLTPL-IKDIQELIAKSNV 78 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCc-hhhhhhhhc-cCChhhhhhHHH-HHHHHHHHcCCCc
Confidence 568899999999999999999999996 333322322111000 011111110 110 01111 11233333333
Q ss_pred CeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcCCCC---CcChHHHHHHHHHHhhcccc--------CCc
Q 023493 165 RLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFP---ESEVLPQLFALYKEMRDGYA--------TAD 231 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R~r~---~~~~~~~l~~~~~~r~~~y~--------~ad 231 (281)
..||..+.-....+. .-. .+.+|||++|.+++.+| .+|... .++....+...+....+.|. .++
T Consensus 79 ~~vivd~~~~~~~~~---~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 155 (182)
T PRK08233 79 DYIIVDYPFAYLNSE---MRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNAD 155 (182)
T ss_pred eEEEEeeehhhccHH---HHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCe
Confidence 445543321111111 112 68999999999998877 444321 12233334444444444332 367
Q ss_pred EEEEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 232 VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 232 ~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
++|+. +.+++++.++|.+.+..
T Consensus 156 ~vId~-------------~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 156 IVLDG-------------ALSVEEIINQIEEELYR 177 (182)
T ss_pred EEEcC-------------CCCHHHHHHHHHHHHHh
Confidence 77764 58999999999998764
No 60
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.35 E-value=2.1e-11 Score=99.75 Aligned_cols=132 Identities=16% Similarity=0.244 Sum_probs=74.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCce
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g~ 174 (281)
.|+|+|+|||||||+|+.||+.+|++++|.|.+..+..+ ....+.. ....+++...+.+..+.....+|+. |...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~-~~~~~~~---~~~~i~~~l~~~~~~~~~~~~~Vid-g~~~ 75 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG-KLASEVA---AIPEVRKALDERQRELAKKPGIVLE-GRDI 75 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH-HHHHHhc---ccHhHHHHHHHHHHHHhhCCCEEEE-eeee
Confidence 488999999999999999999999999999855433221 0000000 0112222222334445444456664 3211
Q ss_pred eechhhHHhcc-CCcEEEEEcCHHHHHhh--h-----cCCCCCcChHHHHHHHHHHh----hcccc--CCcEEEEc
Q 023493 175 VQSSANLALLR-HGISLWIDVPPGMVARM--D-----HSGFPESEVLPQLFALYKEM----RDGYA--TADVTVSL 236 (281)
Q Consensus 175 v~~~~~~~~L~-~~~vV~L~~s~e~l~~R--~-----~R~r~~~~~~~~l~~~~~~r----~~~y~--~ad~~Id~ 236 (281)
.+..+. .+++|||++|++.+.+| . .++.+.++....+...-+.+ ...|. ..|++||+
T Consensus 76 -----~~~~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 76 -----GTVVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVIDT 146 (147)
T ss_pred -----eeEEcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcEEEeC
Confidence 111123 57999999999999988 3 22444444444443332222 12233 35788874
No 61
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.35 E-value=1.4e-11 Score=107.38 Aligned_cols=154 Identities=19% Similarity=0.164 Sum_probs=87.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC-CC-hHHHHHhhhhh-----------------hHHHH-H
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES-AAKAFRESDEK-----------------GYQQA-E 153 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~-~~-i~eif~~~ge~-----------------~fr~~-e 153 (281)
+.|+|+|++||||||+++.|++.+|++++|+|.+.++.+.. .. ...+...+|.. .|.+. .
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 47999999999999999999998899999999998776531 11 11222222211 11110 0
Q ss_pred HHHHHH-------------Hhc--CCCeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-hcC-CCCCcChHHHH
Q 023493 154 TEVLKQ-------------LSS--MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQL 216 (281)
Q Consensus 154 ~~vl~~-------------l~~--~~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l 216 (281)
...+++ +.. ....|+... ..+.+..+.. ..|.+||++||.+++.+| ..| |.+.++....+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~--pll~E~~~~~-~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~ri 158 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI--PLLFEAKLTD-LCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEARI 158 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe--HHhcCcchHh-CCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 111111 111 112222210 0111111110 157899999999999999 544 55543333334
Q ss_pred HHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 217 FALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 217 ~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
..++.. ...-..+|++|++ +.+.+++..++.+.+
T Consensus 159 ~~Q~~~-~~k~~~aD~vI~N-------------~g~~e~l~~qv~~~l 192 (195)
T PRK14730 159 NAQWPL-EEKVKLADVVLDN-------------SGDLEKLYQQVDQLL 192 (195)
T ss_pred HhCCCH-HHHHhhCCEEEEC-------------CCCHHHHHHHHHHHH
Confidence 333211 1111259999986 468888888887654
No 62
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.34 E-value=6.3e-12 Score=107.90 Aligned_cols=156 Identities=16% Similarity=0.234 Sum_probs=90.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~ 165 (281)
-+|..|+|+|++||||||+++.|+..+ | ..+++.|.+...+.++.... .+.....++... .+...+...+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~G~ 91 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFS---EEDRKENIRRIG-EVAKLFVRNGI 91 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCC---HHHHHHHHHHHH-HHHHHHHcCCC
Confidence 468999999999999999999999887 2 56788888765543311100 111122232221 12233444455
Q ss_pred eEEEeCCceeechhhHHhc----cC--CcEEEEEcCHHHHHhhhcCCCCCcChHHHHHHHHHHhhcccc--CCcEEEEcC
Q 023493 166 LVVCAGNGAVQSSANLALL----RH--GISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQ 237 (281)
Q Consensus 166 ~VIa~G~g~v~~~~~~~~L----~~--~~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~~~r~~~y~--~ad~~Id~~ 237 (281)
.||.+.. ......+..+ +. -++|||++|.+.+.+|..++.......+.+..+...+.++|. .||++|++
T Consensus 92 ~VI~d~~--~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~y~~p~~adl~Idt- 168 (184)
T TIGR00455 92 IVITSFI--SPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEVVLDT- 168 (184)
T ss_pred EEEEecC--CCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCCCCCCCCCcEEEEC-
Confidence 5665431 1222223322 21 367999999999999932321110001112222233444443 48999985
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 238 KVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 238 ~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
++.++++++++|++.+
T Consensus 169 -----------~~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 169 -----------DQNDREECVGQIIEKL 184 (184)
T ss_pred -----------CCCCHHHHHHHHHHhC
Confidence 4789999999998753
No 63
>PLN02422 dephospho-CoA kinase
Probab=99.33 E-value=3.4e-11 Score=107.75 Aligned_cols=157 Identities=14% Similarity=0.091 Sum_probs=92.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHhhhhhhH----------------HHH-HH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESDEKGY----------------QQA-ET 154 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~--~~i~eif~~~ge~~f----------------r~~-e~ 154 (281)
+.|.|+|.+||||||+++.|+ .+|++++|+|.+..+.+.. ....++...+|+..+ .+. ..
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 369999999999999999998 5899999999998776531 112333334443221 100 00
Q ss_pred HHHHHHh-----------------cCCCeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-hcC-CCCCcChHHH
Q 023493 155 EVLKQLS-----------------SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQ 215 (281)
Q Consensus 155 ~vl~~l~-----------------~~~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~ 215 (281)
+.|+++. .....|+... ..+.+.++.. ..|.+|+++||.+++.+| .+| |.+.++....
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei--pLL~E~~~~~-~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~R 157 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI--PLLFETKMDK-WTKPVVVVWVDPETQLERLMARDGLSEEQARNR 157 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe--hhhhhcchhh-hCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 1111110 1112222211 0111111110 168999999999999999 555 4554444444
Q ss_pred HHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 216 LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 216 l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
+..++... ..-..||++|++ +.+.+++..++.+.++.+.
T Consensus 158 i~~Q~~~e-ek~~~AD~VI~N-------------~gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 158 INAQMPLD-WKRSKADIVIDN-------------SGSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred HHHcCChh-HHHhhCCEEEEC-------------CCCHHHHHHHHHHHHHHHh
Confidence 44332211 111259999997 4699999998888887663
No 64
>PRK14526 adenylate kinase; Provisional
Probab=99.33 E-value=5.5e-11 Score=105.05 Aligned_cols=108 Identities=10% Similarity=0.161 Sum_probs=66.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC-----CChHHHHHhhhhhhHHHHHHHHHHH-Hhc---CC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLKQ-LSS---MG 164 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~-----~~i~eif~~~ge~~fr~~e~~vl~~-l~~---~~ 164 (281)
+.|+|+|+|||||||+++.||+.+++.++++++++++.... ..+.+++.. |.....+.-..++.. +.. ..
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~-g~lvpd~~~~~lv~~~l~~~~~~~ 79 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVEN-GQLVPDSITIKIVEDKINTIKNND 79 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHc-CccCChHHHHHHHHHHHhcccccC
Confidence 36899999999999999999999999999999998764321 223444432 332222221222222 211 12
Q ss_pred CeEEEeCCceeechhhHHhcc----CCcEEEEEcCHHHHHhh-hcC
Q 023493 165 RLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHS 205 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~~L~----~~~vV~L~~s~e~l~~R-~~R 205 (281)
.+|++ |++-.......+. ...+|+|++|.+++.+| ..|
T Consensus 80 g~ilD---GfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R 122 (211)
T PRK14526 80 NFILD---GFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGR 122 (211)
T ss_pred cEEEE---CCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCC
Confidence 34442 4443333333332 24678899999999999 443
No 65
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.33 E-value=1.6e-11 Score=101.59 Aligned_cols=124 Identities=19% Similarity=0.179 Sum_probs=75.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHH-----HhCCCChHHHHHhhhhhhHHHHHHHHHHHHh-cCCCeEE
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----AAGGESAAKAFRESDEKGYQQAETEVLKQLS-SMGRLVV 168 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~-----~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~-~~~~~VI 168 (281)
+|+|+|+|||||||+|+.|++.+++.++|.|.+... ...+.... ....+.+++.........+. ....+|+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~vVi 77 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLN---DEDRWPWLQALTDALLAKLASAGEGVVV 77 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCC---ccchhhHHHHHHHHHHHHHHhCCCCEEE
Confidence 478999999999999999999999999999998753 11112111 11123344444333333333 3445666
Q ss_pred EeCCceeechhhHHhcc------CCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhc
Q 023493 169 CAGNGAVQSSANLALLR------HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRD 225 (281)
Q Consensus 169 a~G~g~v~~~~~~~~L~------~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~ 225 (281)
+++. .....+..+. ...+|||++|.+++.+| ..|...... ...+..++...++
T Consensus 78 d~~~---~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~-~~~~~~~~~~~~~ 137 (150)
T cd02021 78 ACSA---LKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKGHFMP-ADLLDSQFETLEP 137 (150)
T ss_pred Eecc---ccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcccCCCC-HHHHHHHHHHhcC
Confidence 6442 2233333222 23689999999999999 655322111 3456666655443
No 66
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.31 E-value=2e-10 Score=102.37 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=35.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~ 130 (281)
..+.|.|.|++||||||+|+.||+.+|++++|+|.+++.
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 457899999999999999999999999999999997654
No 67
>PLN02459 probable adenylate kinase
Probab=99.31 E-value=6.7e-11 Score=107.40 Aligned_cols=106 Identities=10% Similarity=0.113 Sum_probs=66.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC-----CChHHHHHhhhhhhHHHHHHHHHH-HHhc----
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLK-QLSS---- 162 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~-----~~i~eif~~~ge~~fr~~e~~vl~-~l~~---- 162 (281)
++.|+|+|+|||||||+|+.||+.+|+.++++++++++.... ..+.++.. .|...-.++-..++. .+..
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~-~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVN-QGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHH-cCCccCHHHHHHHHHHHHhccccc
Confidence 367999999999999999999999999999999998775431 11222222 233222222122222 2221
Q ss_pred -CCCeEEEeCCceeechhhHHhcc----CCcEEEEEcCHHHHHhh
Q 023493 163 -MGRLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM 202 (281)
Q Consensus 163 -~~~~VIa~G~g~v~~~~~~~~L~----~~~vV~L~~s~e~l~~R 202 (281)
...+|+ +|++-+......|. .+.+|+|++|.+++.+|
T Consensus 108 ~~~g~iL---DGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~R 149 (261)
T PLN02459 108 GESGFIL---DGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEK 149 (261)
T ss_pred CCceEEE---eCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 122333 24444333333332 47899999999999999
No 68
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.30 E-value=1.6e-10 Score=102.59 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=34.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~ 130 (281)
+.|.|.|++||||||+++.||+++|+.++|+|.+++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~ 39 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRA 39 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHH
Confidence 5799999999999999999999999999999987644
No 69
>PRK04040 adenylate kinase; Provisional
Probab=99.30 E-value=9.8e-11 Score=101.63 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=88.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh--CCceecCchHHHHHhC--CC-ChHHHHHhhhh---hhHHHHHHHHHHHHhcCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAG--GE-SAAKAFRESDE---KGYQQAETEVLKQLSSMG 164 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l--~~~~~d~D~li~~~~g--~~-~i~eif~~~ge---~~fr~~e~~vl~~l~~~~ 164 (281)
++.|+|+|+|||||||+++.|++.+ ++.+++.++++.+... +. .-.+-+..... ..+.....+.+..+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~ 81 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEG 81 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCC
Confidence 4689999999999999999999999 8999999998754332 01 00111111111 112222222333333223
Q ss_pred CeEEEeCCceeechh---------hHHhccCCcEEEEEcCHHHHHhh-h---cCCCCCcCh--HHHHHHHHHHhhcccc-
Q 023493 165 RLVVCAGNGAVQSSA---------NLALLRHGISLWIDVPPGMVARM-D---HSGFPESEV--LPQLFALYKEMRDGYA- 228 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~---------~~~~L~~~~vV~L~~s~e~l~~R-~---~R~r~~~~~--~~~l~~~~~~r~~~y~- 228 (281)
..|++ |..++.... ....+.++.+|||.+|++.+.+| . .|+|+.+.. .......-......|.
T Consensus 82 ~~~~~-~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~ 160 (188)
T PRK04040 82 PVIVD-THATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAV 160 (188)
T ss_pred CEEEe-eeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34553 332222111 11223478999999999999888 3 466664332 1222221111111222
Q ss_pred ---CCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 229 ---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 229 ---~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
..+++|.++ +..+|+.+++|.+.+
T Consensus 161 ~~g~~~~iI~N~------------d~~~e~a~~~i~~ii 187 (188)
T PRK04040 161 LTGATVKIVENR------------EGLLEEAAEEIVEVL 187 (188)
T ss_pred hcCCeEEEEECC------------CCCHHHHHHHHHHHh
Confidence 356777753 233999999988765
No 70
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.30 E-value=4e-11 Score=103.45 Aligned_cols=149 Identities=18% Similarity=0.172 Sum_probs=85.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCC--ChHHHHHhhhhhh----------------HHHHH---
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE--SAAKAFRESDEKG----------------YQQAE--- 153 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~--~i~eif~~~ge~~----------------fr~~e--- 153 (281)
.|+|+|.+||||||+++.|++..|++++|+|.+..+.+... ...++...+|... |.+.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 38999999999999999999987799999999987766411 1222333333221 11111
Q ss_pred -----------HHHHHHHh---cCCCeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC-CCCCcChHHHH
Q 023493 154 -----------TEVLKQLS---SMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESEVLPQL 216 (281)
Q Consensus 154 -----------~~vl~~l~---~~~~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l 216 (281)
.++.+.+. ..+..|+... ...... .+.. .+.+||+++|.+++.+| ..| +.+.++....+
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~--pll~e~--~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~ 156 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDV--PLLFEN--KLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRL 156 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEc--hHhhhC--CcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 01111111 1112333211 011011 1112 68999999999999999 555 45543333334
Q ss_pred HHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHH
Q 023493 217 FALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVL 261 (281)
Q Consensus 217 ~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il 261 (281)
..+.... .....+|++|++ +.++++...++.
T Consensus 157 ~~q~~~~-~~~~~ad~vI~N-------------~~~~e~l~~~~~ 187 (188)
T TIGR00152 157 ASQMDIE-ERLARADDVIDN-------------SATLADLVKQLE 187 (188)
T ss_pred HhcCCHH-HHHHhCCEEEEC-------------CCCHHHHHHHHh
Confidence 3332111 111249999986 478998887764
No 71
>PRK14529 adenylate kinase; Provisional
Probab=99.29 E-value=1.1e-10 Score=103.87 Aligned_cols=105 Identities=13% Similarity=0.177 Sum_probs=66.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC-C----ChHHHHHhhhhhhHHHHHHHHHH-HHhc--CCC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-E----SAAKAFRESDEKGYQQAETEVLK-QLSS--MGR 165 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~-~----~i~eif~~~ge~~fr~~e~~vl~-~l~~--~~~ 165 (281)
+.|+|+|+|||||||+++.|++.+++.++++++++++.... . .+.++. ..|.....+.-..++. .+.. ..+
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~~~g 79 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDGKNG 79 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccCCCc
Confidence 46999999999999999999999999999999988775431 1 122222 2243333332222222 2222 123
Q ss_pred eEEEeCCceeechhhHHh----c-----cCCcEEEEEcCHHHHHhh
Q 023493 166 LVVCAGNGAVQSSANLAL----L-----RHGISLWIDVPPGMVARM 202 (281)
Q Consensus 166 ~VIa~G~g~v~~~~~~~~----L-----~~~~vV~L~~s~e~l~~R 202 (281)
+|++ |++-....... + ..+.+|+|++|.+++.+|
T Consensus 80 ~iLD---GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~R 122 (223)
T PRK14529 80 WLLD---GFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNR 122 (223)
T ss_pred EEEe---CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 4442 44443332221 2 257899999999999999
No 72
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.28 E-value=4.3e-11 Score=102.70 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=65.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhhhhhHHHHHHHHHHH-Hhc---CCC
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLKQ-LSS---MGR 165 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~-----i~eif~~~ge~~fr~~e~~vl~~-l~~---~~~ 165 (281)
+|+|+|+|||||||+|+.||+.+|+.+++.|+++++.....+ +...+.. |.....+....++.. +.. ...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~l~~~~~~~~ 79 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDS-GKLVPDEIVIKLLKERLKKPDCKKG 79 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHc-CCccCHHHHHHHHHHHHhcccccCC
Confidence 489999999999999999999999999999999877543111 1122221 211111111222222 222 234
Q ss_pred eEEEeCCceeechhhHHhc--------cCCcEEEEEcCHHHHHhh-hcCC
Q 023493 166 LVVCAGNGAVQSSANLALL--------RHGISLWIDVPPGMVARM-DHSG 206 (281)
Q Consensus 166 ~VIa~G~g~v~~~~~~~~L--------~~~~vV~L~~s~e~l~~R-~~R~ 206 (281)
+|+. |++........+ ..+++|||++|.+++.+| .+|+
T Consensus 80 ~vld---g~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 80 FILD---GFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred EEEe---CCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 4553 333322222222 246899999999999999 5443
No 73
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.28 E-value=1.3e-10 Score=104.83 Aligned_cols=161 Identities=14% Similarity=0.074 Sum_probs=94.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC-C-ChHHHHHhhhhh----------------hHHHHH-H
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-E-SAAKAFRESDEK----------------GYQQAE-T 154 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~-~-~i~eif~~~ge~----------------~fr~~e-~ 154 (281)
..|.|+|.+||||||+++.|++.+|++.+|+|.+.++.+.. . ....+.+.+|.. .|.+.+ .
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 46999999999999999999998999999999998776541 1 012222222211 121100 0
Q ss_pred HHHHH-------------Hh------------cC-CCeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-hcC-C
Q 023493 155 EVLKQ-------------LS------------SM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-G 206 (281)
Q Consensus 155 ~vl~~-------------l~------------~~-~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R-~ 206 (281)
+.|++ +. .. ...|+... ..+.+.++...-.|.+|++.+|.+++.+| ..| +
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev--PLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g 159 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA--PTLFETKTFTYFVSASVVVSCSEERQIERLRKRNG 159 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe--chhhccCchhhcCCeEEEEECCHHHHHHHHHHcCC
Confidence 11111 11 00 11233211 11122221111258999999999999999 544 5
Q ss_pred CCCcChHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 207 FPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 207 r~~~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
.+.++....+..++.... .-..+|++|+++ +-.+++++..+|.+.++.+.
T Consensus 160 ~s~eea~~Ri~~Q~~~~e-k~~~aD~VI~N~-----------~~g~~~~L~~~v~~~~~~~~ 209 (244)
T PTZ00451 160 FSKEEALQRIGSQMPLEE-KRRLADYIIEND-----------SADDLDELRGSVCDCVAWMS 209 (244)
T ss_pred CCHHHHHHHHHhCCCHHH-HHHhCCEEEECC-----------CCCCHHHHHHHHHHHHHHHH
Confidence 565455555554433211 112599999861 11799999999998886644
No 74
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.28 E-value=2.1e-10 Score=100.96 Aligned_cols=158 Identities=14% Similarity=0.121 Sum_probs=91.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCC---hHHHHHhhhhh--------------------hH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES---AAKAFRESDEK--------------------GY 149 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~---i~eif~~~ge~--------------------~f 149 (281)
...|.|+|.+||||||+++.|++ +|++.+|+|.+..+.+. .. ...+...+|.. .|
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~-~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQV-TDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcC-CcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 36789999999999999999986 89999999988766543 11 01111111111 11
Q ss_pred HHHH-HHHHH----------------HHhcCC-CeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-hcCCCCC-
Q 023493 150 QQAE-TEVLK----------------QLSSMG-RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPE- 209 (281)
Q Consensus 150 r~~e-~~vl~----------------~l~~~~-~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R~r~~- 209 (281)
.+.+ ...++ ...... .+|+..+ ..+.+..+. -..+.+|++++|.+++.+| .+|+...
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~--pLL~e~~~~-~~~d~ii~V~a~~e~~~~Rl~~R~~~s~ 159 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEA--AILFESGGD-AGLDFIVVVAADTELRLERAVQRGMGSR 159 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEe--eeeeecCch-hcCCeEEEEECCHHHHHHHHHHcCCCCH
Confidence 0000 00111 111111 3344211 122222221 0158999999999999999 6676542
Q ss_pred cChHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 210 SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 210 ~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
++....+..++...... +.+|++|++ +.+++++..+|.+.++.+++
T Consensus 160 e~~~~Ri~~q~~~~~~~-~~ad~vI~N-------------~g~~e~l~~~i~~~~~~~~~ 205 (208)
T PRK14731 160 EEIRRRIAAQWPQEKLI-ERADYVIYN-------------NGTLDELKAQTEQLYQVLLQ 205 (208)
T ss_pred HHHHHHHHHcCChHHHH-HhCCEEEEC-------------CCCHHHHHHHHHHHHHHHHH
Confidence 23333444333222221 248999986 47999999999988877653
No 75
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.26 E-value=1.6e-10 Score=103.27 Aligned_cols=107 Identities=9% Similarity=0.120 Sum_probs=65.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCC-Ch----HHHHHhhhh----hhHHHHHHHHHHHHhc
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-SA----AKAFRESDE----KGYQQAETEVLKQLSS 162 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~-~i----~eif~~~ge----~~fr~~e~~vl~~l~~ 162 (281)
.++.|+|+|+|||||||+|+.||+.+|++++++|+++++..... .+ .++... |. +.+...-.+.+.++..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~-G~lvpd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTS-GNLVPDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHhhcc
Confidence 45679999999999999999999999999999999998765411 22 222221 31 1111111122323211
Q ss_pred --CCCeEEEeCCceeechhhHHhc----cCCcEEEEEcCHHHHHhh
Q 023493 163 --MGRLVVCAGNGAVQSSANLALL----RHGISLWIDVPPGMVARM 202 (281)
Q Consensus 163 --~~~~VIa~G~g~v~~~~~~~~L----~~~~vV~L~~s~e~l~~R 202 (281)
...+|+. |++-.......+ +.+.+|+|++|.+++.+|
T Consensus 84 ~~~~g~iLD---GfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~R 126 (229)
T PTZ00088 84 DCFKGFILD---GFPRNLKQCKELGKITNIDLFVNIYLPRNILIKK 126 (229)
T ss_pred ccCceEEEe---cCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHH
Confidence 1223442 333322222222 257899999999999999
No 76
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.25 E-value=2.2e-10 Score=97.10 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=85.3
Q ss_pred EccCCCCHHHHHHHHHHHhCCceecCchHHH-----H-HhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCC
Q 023493 99 VGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----E-AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (281)
Q Consensus 99 ~G~~GsGKstvak~La~~l~~~~~d~D~li~-----~-~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~ 172 (281)
+|++||||||+++.|++.+|..++|.|.+.. . ..| ....+ .....+....+..+..........||.+.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~viv~s- 75 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EPLND---DDRKPWLQALNDAAFAMQRTNKVSLIVCS- 75 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCC-CCCCh---hhHHHHHHHHHHHHHHHHHcCCceEEEEe-
Confidence 5999999999999999999999999987531 1 112 22111 11112222222222222222233334332
Q ss_pred ceeechhhHHhcc----CCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhcccc-CCc-EEEEcCcccccccc
Q 023493 173 GAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TAD-VTVSLQKVASQLGY 245 (281)
Q Consensus 173 g~v~~~~~~~~L~----~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~y~-~ad-~~Id~~~~a~~l~~ 245 (281)
+ .....++.++ .-..|||++|++++.+| ..|.... ...+.+..++...+++.. ..+ ++||+
T Consensus 76 -~-~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~-a~~~vl~~Q~~~~ep~~~~e~~~~~id~--------- 143 (163)
T PRK11545 76 -A-LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHF-FKTQMLVTQFETLQEPGADETDVLVVDI--------- 143 (163)
T ss_pred -c-chHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCCC-CCHHHHHHHHHHcCCCCCCCCCEEEEeC---------
Confidence 1 1233344443 23679999999999999 5554222 233456666665555432 123 44553
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q 023493 246 DDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 246 ~dts~~speeva~~Il~~i~~ 266 (281)
..++++++..++..+.+
T Consensus 144 ----~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 144 ----DQPLEGVVASTIEVIKK 160 (163)
T ss_pred ----CCCHHHHHHHHHHHHHH
Confidence 46889999999998854
No 77
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.25 E-value=1.5e-10 Score=118.95 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=34.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~ 130 (281)
..|.|.|+|||||||+++.||+.||+.|+|++.+++.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~ 38 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRA 38 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHH
Confidence 3789999999999999999999999999999988755
No 78
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.24 E-value=4e-12 Score=107.16 Aligned_cols=108 Identities=26% Similarity=0.417 Sum_probs=63.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-----CCceecCchHHHHHhCCCChHHHHHh-hhhhhHHHHHHHHHHHHhcCCC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRE-SDEKGYQQAETEVLKQLSSMGR 165 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l-----~~~~~d~D~li~~~~g~~~i~eif~~-~ge~~fr~~e~~vl~~l~~~~~ 165 (281)
+|..|+|+|.|||||||+|+.|.++| ...++|.|.+...+.. .+ -|.. +.++..+.. .++...+...+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~--dl--~fs~~dR~e~~rr~-~~~A~ll~~~G~ 75 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA--DL--GFSKEDREENIRRI-AEVAKLLADQGI 75 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT--T----SSHHHHHHHHHHH-HHHHHHHHHTTS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC--CC--CCCHHHHHHHHHHH-HHHHHHHHhCCC
Confidence 47899999999999999999999887 3567898887644322 11 1222 223333332 222333444455
Q ss_pred eEEEeCCceeechhhHH----hccC--CcEEEEEcCHHHHHhhhcCC
Q 023493 166 LVVCAGNGAVQSSANLA----LLRH--GISLWIDVPPGMVARMDHSG 206 (281)
Q Consensus 166 ~VIa~G~g~v~~~~~~~----~L~~--~~vV~L~~s~e~l~~R~~R~ 206 (281)
.||++. +....+.++ .+.. -+.|||+||.+++.+|+.+|
T Consensus 76 ivIva~--isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~Kg 120 (156)
T PF01583_consen 76 IVIVAF--ISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPKG 120 (156)
T ss_dssp EEEEE------SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTTS
T ss_pred eEEEee--ccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCchh
Confidence 566542 222233333 3333 36799999999999995444
No 79
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.24 E-value=4.5e-11 Score=97.54 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=70.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHH--HHhhhhhhHHHHHHHHHHHHhc-CCCeEEEeC
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKA--FRESDEKGYQQAETEVLKQLSS-MGRLVVCAG 171 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~ei--f~~~ge~~fr~~e~~vl~~l~~-~~~~VIa~G 171 (281)
+|+++|+|||||||+++.|++.+++.+++.|.+.....+ ...... ..... ..+...-...+..... ...+|+..+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~g~~~vvd~~ 78 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAG-EDPPSPSDYIEAE-ERAYQILNAAIRKALRNGNSVVVDNT 78 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCC-SSSGCCCCCHHHH-HHHHHHHHHHHHHHHHTT-EEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcc-cccccchhHHHHH-HHHHHHHHHHHHHHHHcCCCceeccC
Confidence 589999999999999999999999999999998887765 211100 00000 1111111122333333 334555422
Q ss_pred CceeechhhHH----hcc-CC---cEEEEEcCHHHHHhh-hcCCCCCc----ChHHHHHHHHHHh
Q 023493 172 NGAVQSSANLA----LLR-HG---ISLWIDVPPGMVARM-DHSGFPES----EVLPQLFALYKEM 223 (281)
Q Consensus 172 ~g~v~~~~~~~----~L~-~~---~vV~L~~s~e~l~~R-~~R~r~~~----~~~~~l~~~~~~r 223 (281)
......+. .++ .+ .+|||++|.+++.+| ..|++... ...+.+.++++..
T Consensus 79 ---~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 140 (143)
T PF13671_consen 79 ---NLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRFEVPEEVFDRMLARF 140 (143)
T ss_dssp -----SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS----HHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccccCcHHHHHHHHHhh
Confidence 12223322 222 34 689999999999999 66644321 2234455555443
No 80
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.23 E-value=9.3e-10 Score=94.48 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=93.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHH------HhCCCChHHHHHhhhhhhHHH-HHHHHHHHHhc-
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDEKGYQQ-AETEVLKQLSS- 162 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~------~~g~~~i~eif~~~ge~~fr~-~e~~vl~~l~~- 162 (281)
+.|..++|+|++||||||+++.|+..++..++|.|.+... ..| .... ......|.. ....+...+..
T Consensus 1 ~~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g-~~~~----~~~~~~~~~~~~~~~~~~~~~~ 75 (176)
T PRK09825 1 MAGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQG-IPLT----DEDRLPWLERLNDASYSLYKKN 75 (176)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcC-CCCC----cccchHHHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999999999999885321 112 2111 111111222 11111111111
Q ss_pred CCCeEEEeCCceeechhhHHhcc----CCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhcccc-CCc-EEEE
Q 023493 163 MGRLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TAD-VTVS 235 (281)
Q Consensus 163 ~~~~VIa~G~g~v~~~~~~~~L~----~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~y~-~ad-~~Id 235 (281)
....|+ +. + .....++.++ .-..|||++|++++.+| .+|.... ...+.+..++....+... ..+ ++||
T Consensus 76 ~~g~iv-~s--~-~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~-~~~~vl~~Q~~~~e~~~~~e~~~~~~d 150 (176)
T PRK09825 76 ETGFIV-CS--S-LKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHF-MPPDLLQSQFDALERPCADEHDIARID 150 (176)
T ss_pred CCEEEE-EE--e-cCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCC-CCHHHHHHHHHHcCCCCCCcCCeEEEE
Confidence 223333 22 1 2333444444 22679999999999999 6664332 234556666665554432 234 4566
Q ss_pred cCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 236 LQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 236 ~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
+ ..++++++..+.+.+..+..
T Consensus 151 ~-------------~~~~~~~~~~~~~~~~~~~~ 171 (176)
T PRK09825 151 V-------------NHDIENVTEQCRQAVQAFRQ 171 (176)
T ss_pred C-------------CCCHHHHHHHHHHHHHHHHh
Confidence 4 46889999999998876543
No 81
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.22 E-value=3.8e-10 Score=96.51 Aligned_cols=157 Identities=20% Similarity=0.176 Sum_probs=80.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh---CCceecCc--------hHHHHHhCCCC---hHHHHHhhhhhhHHH---HHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSD--------SLVFEAAGGES---AAKAFRESDEKGYQQ---AETEV 156 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l---~~~~~d~D--------~li~~~~g~~~---i~eif~~~ge~~fr~---~e~~v 156 (281)
+.|+|.|++||||||+++.|++.+ |+.++... ..++..+.... ....... ...+.. ...+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~~ 78 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAEL--LLFAADRAQHVEEV 78 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHH--HHHHHHHHHHHHHH
Confidence 479999999999999999999988 65544321 23333322100 0000000 000011 01112
Q ss_pred HHHHhcCCCeEEEeCC--------cee--echhhHHh--------ccCCcEEEEEcCHHHHHhh-hcCCCCCc---ChHH
Q 023493 157 LKQLSSMGRLVVCAGN--------GAV--QSSANLAL--------LRHGISLWIDVPPGMVARM-DHSGFPES---EVLP 214 (281)
Q Consensus 157 l~~l~~~~~~VIa~G~--------g~v--~~~~~~~~--------L~~~~vV~L~~s~e~l~~R-~~R~r~~~---~~~~ 214 (281)
+......+..||+... +.. ........ +.++.+|||++|++++.+| .+|+.... ....
T Consensus 79 ~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~ 158 (200)
T cd01672 79 IKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLE 158 (200)
T ss_pred HHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHH
Confidence 2222234556665411 000 01111111 1257999999999999999 66654321 1122
Q ss_pred HH---HHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHH
Q 023493 215 QL---FALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 215 ~l---~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~ 265 (281)
.+ ...|......+....++||. +.+++++.++|.+.|.
T Consensus 159 ~~~~~~~~y~~~~~~~~~~~~~id~-------------~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 159 FHERVREGYLELAAQEPERIIVIDA-------------SQPLEEVLAEILKAIL 199 (200)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeC-------------CCCHHHHHHHHHHHHh
Confidence 22 22233222222112255663 5789999999998875
No 82
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.22 E-value=2.9e-10 Score=99.29 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=90.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC-CC-ChHHHHHhhhhhh----------------HHHH-HHH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GE-SAAKAFRESDEKG----------------YQQA-ETE 155 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g-~~-~i~eif~~~ge~~----------------fr~~-e~~ 155 (281)
.|.|+|++||||||+++.|++ +|+.++|+|.+..+.+. +. ....+...+|... |.+. ...
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 378999999999999999976 79999999999877653 11 1122333333221 1100 001
Q ss_pred HHHHHh---------------cCCCeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-hcC-CCCCcChHHHHHH
Q 023493 156 VLKQLS---------------SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLFA 218 (281)
Q Consensus 156 vl~~l~---------------~~~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l~~ 218 (281)
.++++. .....|+... ..+.+.++. -..|.+||+++|++++.+| ..| |.+.++....+..
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~--pLL~E~~~~-~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~ 156 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEV--PLLFETDAY-TLCDATVTVDSDPEESILRTISRDGMKKEDVLARIAS 156 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEe--eeeeEcCch-hhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 111110 1122333211 111122211 0168999999999999999 554 5554444444443
Q ss_pred HHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 219 LYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 219 ~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
++.. .+.-..||++|++ +.+.+++..++.+.++.++.
T Consensus 157 Q~~~-~~k~~~aD~vI~N-------------~~~~~~l~~~v~~l~~~~~~ 193 (196)
T PRK14732 157 QLPI-TEKLKRADYIVRN-------------DGNREGLKEECKILYSTLLK 193 (196)
T ss_pred cCCH-HHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHHHHH
Confidence 3211 1111259999986 46899999999988776543
No 83
>PRK06547 hypothetical protein; Provisional
Probab=99.22 E-value=4.1e-11 Score=102.63 Aligned_cols=120 Identities=23% Similarity=0.262 Sum_probs=73.3
Q ss_pred HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhhhhhHHHH--HHHH
Q 023493 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQA--ETEV 156 (281)
Q Consensus 84 ~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~-----i~eif~~~ge~~fr~~--e~~v 156 (281)
+.++.+ .....|.|.|++||||||+++.|++.+++.+++.|+++....+ .. +.+.+...|+..+... ....
T Consensus 7 ~~~~~~-~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~ 84 (172)
T PRK06547 7 AARLCG-GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNR 84 (172)
T ss_pred HHHhhc-CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCC
Confidence 444443 4567788889999999999999999999999999998754322 22 1122222222211110 0000
Q ss_pred HHH--HhcCCCeEEEeCCceeechhhHHhcc-CC--cEEEEEcCHHHHHhh-hcCC
Q 023493 157 LKQ--LSSMGRLVVCAGNGAVQSSANLALLR-HG--ISLWIDVPPGMVARM-DHSG 206 (281)
Q Consensus 157 l~~--l~~~~~~VIa~G~g~v~~~~~~~~L~-~~--~vV~L~~s~e~l~~R-~~R~ 206 (281)
... .......||..|.+.. ....+..+. ++ +.|||++|.+++.+| ..|.
T Consensus 85 ~~~~~~l~~~~vVIvEG~~al-~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 85 PGDWVSVEPGRRLIIEGVGSL-TAANVALASLLGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred CCCcEEeCCCCeEEEEehhhc-cHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcC
Confidence 000 0112346767776665 445555553 33 789999999999999 5553
No 84
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.22 E-value=1.9e-11 Score=124.56 Aligned_cols=39 Identities=26% Similarity=0.282 Sum_probs=36.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~ 131 (281)
.+.|.|.||+||||||+|+.||++||++|+|+|.+++..
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 568999999999999999999999999999999988664
No 85
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.21 E-value=7.8e-11 Score=119.48 Aligned_cols=160 Identities=13% Similarity=0.200 Sum_probs=97.8
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcC
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSM 163 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l-----~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~ 163 (281)
...++..|+++|+|||||||+|+.|++.| ++.++|.|.+.....++.. +-.+.....++..- .+...+...
T Consensus 456 ~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~---~~~~~r~~~~~~l~-~~a~~~~~~ 531 (632)
T PRK05506 456 KGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLG---FSDADRVENIRRVA-EVARLMADA 531 (632)
T ss_pred hCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCC---CCHHHHHHHHHHHH-HHHHHHHhC
Confidence 33468999999999999999999999987 3578999998764433111 01111222333321 112222233
Q ss_pred CCeEEEeCCceeechhhHHh----cc-CC-cEEEEEcCHHHHHhhhcCCCCCcChHHHHHHHHHHhhcccc--CCcEEEE
Q 023493 164 GRLVVCAGNGAVQSSANLAL----LR-HG-ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVS 235 (281)
Q Consensus 164 ~~~VIa~G~g~v~~~~~~~~----L~-~~-~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~~~r~~~y~--~ad~~Id 235 (281)
+..||... .......++. +. .. .+|||++|.+.+.+|..|+.........+..++..+.+++. .++++|+
T Consensus 532 G~~Vivda--~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~y~~P~~a~~~Id 609 (632)
T PRK05506 532 GLIVLVSF--ISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAPENPELRLD 609 (632)
T ss_pred CCEEEEEC--CCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccccccccCCCCCCCCeEEEe
Confidence 44444432 1122233332 22 23 78999999999999954554321112344555566666442 4789998
Q ss_pred cCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 236 LQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 236 ~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
+ ++.++++++++|++++..
T Consensus 610 ~------------~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 610 T------------TGRSPEELAEQVLELLRR 628 (632)
T ss_pred C------------CCCCHHHHHHHHHHHHHH
Confidence 5 478999999999999864
No 86
>PLN02842 nucleotide kinase
Probab=99.21 E-value=2.5e-10 Score=112.04 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=93.2
Q ss_pred EEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC-C----CChHHHHHhhhhhhHHHHHHHHHH-HHhc----CCCe
Q 023493 97 FLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLK-QLSS----MGRL 166 (281)
Q Consensus 97 ~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g-~----~~i~eif~~~ge~~fr~~e~~vl~-~l~~----~~~~ 166 (281)
+|+|+|||||||+|+.|++.+++.++++++++..... + ..+.+++.. |.....+.-..++. .+.. ...+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~-G~lvPdeiv~~ll~drl~~~~~~~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNS-GRLVPDEIVIAMVTGRLSREDAKEKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHhCccccCCcE
Confidence 4799999999999999999999999999998865422 1 123333321 22111111111121 2211 1234
Q ss_pred EEEeCCceeechhhHHhc-----cCCcEEEEEcCHHHHHhh-hcCC---------------------------CCCcChH
Q 023493 167 VVCAGNGAVQSSANLALL-----RHGISLWIDVPPGMVARM-DHSG---------------------------FPESEVL 213 (281)
Q Consensus 167 VIa~G~g~v~~~~~~~~L-----~~~~vV~L~~s~e~l~~R-~~R~---------------------------r~~~~~~ 213 (281)
|+ . |++........| ..+++|||++|.+++.+| .+|. |+ ++..
T Consensus 80 IL-D--GfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~-DD~e 155 (505)
T PLN02842 80 LL-D--GYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRP-DDTE 155 (505)
T ss_pred EE-e--CCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCC-CCCH
Confidence 55 2 343332222223 268999999999999998 4431 11 1222
Q ss_pred HHHHHH---HHHh-hc---cccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhhchhh
Q 023493 214 PQLFAL---YKEM-RD---GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKKKMM 274 (281)
Q Consensus 214 ~~l~~~---~~~r-~~---~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~~~~~ 274 (281)
+.+.+- |.+. .+ .|..--..|| ++.++++|..+|...+.+.+..+++|
T Consensus 156 E~IkkRL~~Y~~~t~pIl~~Y~~rl~~ID-------------Asqs~EeVfeeI~~iL~~~L~~~~~~ 210 (505)
T PLN02842 156 EKVKARLQIYKKNAEAILSTYSDIMVKID-------------GNRPKEVVFEEISSLLSQIQKDATKM 210 (505)
T ss_pred HHHHHHHHHHHHHhhhHHHhcCcEEEEEE-------------CCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 333332 2222 12 2221112344 35799999999999999998887776
No 87
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.21 E-value=4.7e-10 Score=103.16 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=73.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh-CCceecCchHHHHHhCCCChHH-HHHhhhhhhHHHHHHHHHHHHhcC-CCeEEE
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAAK-AFRESDEKGYQQAETEVLKQLSSM-GRLVVC 169 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l-~~~~~d~D~li~~~~g~~~i~e-if~~~ge~~fr~~e~~vl~~l~~~-~~~VIa 169 (281)
+++|+++|+|||||||+|+.|++.+ ++.+++.|.+.....+...... .+...++..........+...... ..+|++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid 81 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIIS 81 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 3678999999999999999999999 8999999998766554111000 111112222222223333333333 334554
Q ss_pred eCCceeechhhHH-hcc-CC---cEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHh
Q 023493 170 AGNGAVQSSANLA-LLR-HG---ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEM 223 (281)
Q Consensus 170 ~G~g~v~~~~~~~-~L~-~~---~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r 223 (281)
+..........+. +.+ .+ .+|||++|.+++.+| .+|+... ...+.+.++++..
T Consensus 82 ~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~-~~~~~i~~~~~~~ 140 (300)
T PHA02530 82 DTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERA-VPEDVLRSMFKQM 140 (300)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCC-CCHHHHHHHHHHH
Confidence 3321111122222 222 22 369999999999999 6675321 1233445444433
No 88
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.20 E-value=6e-11 Score=111.63 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=71.9
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCC------ceecCchHH-----HHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCC
Q 023493 96 VFLVGMNNAIKTHLGKFLADALRY------YYFDSDSLV-----FEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (281)
Q Consensus 96 i~l~G~~GsGKstvak~La~~l~~------~~~d~D~li-----~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~ 164 (281)
++|+|+|||||||+++.|++.|+. .++|.|+++ +...| .+++++|+ .||. ++.+++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~-~~~~~~~k-----~~R~----~i~~~le-- 69 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQS-REIPSQWK-----QFRQ----ELLKYLE-- 69 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcC-CCcHHHHH-----HHHH----HHHHHHH--
Confidence 689999999999999999987763 389999998 55556 78888773 4553 3333332
Q ss_pred CeEEEeCCceeech----------hhHHhcc-CCcEEEEEcCHHHHHhh
Q 023493 165 RLVVCAGNGAVQSS----------ANLALLR-HGISLWIDVPPGMVARM 202 (281)
Q Consensus 165 ~~VIa~G~g~v~~~----------~~~~~L~-~~~vV~L~~s~e~l~~R 202 (281)
..|+++|+|+.+.+ +++..|+ +|++|||+++.+....|
T Consensus 70 ~~v~a~~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~r 118 (340)
T TIGR03575 70 HFLVAVINGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHS 118 (340)
T ss_pred HHHHHhcCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHH
Confidence 34667888887643 3446665 89999999999999988
No 89
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.20 E-value=7.4e-10 Score=94.95 Aligned_cols=159 Identities=13% Similarity=0.199 Sum_probs=96.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC------CChHHHHHhhhhhhHHHHHHHHHHHHh-c-
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG------ESAAKAFRESDEKGYQQAETEVLKQLS-S- 162 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~------~~i~eif~~~ge~~fr~~e~~vl~~l~-~- 162 (281)
-+.+.||+.|.|||||-|++..+++.+||.++++++++++.... .-+.++.. .|.....++-..+|+.-+ +
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~-~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIK-NGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHH-cCCcCcHHHHHHHHHHHHHhc
Confidence 35688999999999999999999999999999999999876541 11222222 132222222222222221 1
Q ss_pred -CCC-eEEEeCCceeechhhHHhc----c--CCcEEEEEcCHHHHHhh-hcCCCC----CcC---hHHHHHHHHHHhhc-
Q 023493 163 -MGR-LVVCAGNGAVQSSANLALL----R--HGISLWIDVPPGMVARM-DHSGFP----ESE---VLPQLFALYKEMRD- 225 (281)
Q Consensus 163 -~~~-~VIa~G~g~v~~~~~~~~L----~--~~~vV~L~~s~e~l~~R-~~R~r~----~~~---~~~~l~~~~~~r~~- 225 (281)
..+ .+| +|++-..+++..+ . .++++|++|+.|++.+| ..|+.. .++ ...++...+....|
T Consensus 85 ~~~~~fLI---DGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pv 161 (195)
T KOG3079|consen 85 GDSNGFLI---DGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPV 161 (195)
T ss_pred CCCCeEEe---cCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHH
Confidence 112 344 3566555555433 2 47999999999999999 555433 222 12223322233333
Q ss_pred --cccCCc--EEEEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 226 --GYATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 226 --~y~~ad--~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
+|+..+ ..|+ .+.++++|..++...+..
T Consensus 162 i~~~e~kg~l~~i~-------------a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 162 IEYYEKKGKLLKIN-------------AERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHccCcEEEec-------------CCCCHHHHHHHHHHHhhc
Confidence 344333 3454 468999999999888754
No 90
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.20 E-value=3.1e-10 Score=99.57 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=93.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHhhh----------------hhhHHHH-H
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESD----------------EKGYQQA-E 153 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~--~~i~eif~~~g----------------e~~fr~~-e 153 (281)
.+.|.|+|.+||||||+++.+++ +|++.+|+|..+++.+.. .....+...+| +..|.+. +
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 46799999999999999999999 999999999998854320 11112222222 2222221 1
Q ss_pred HHHHHHHhcC---CCe-EEEe--CCceeechhhHHhc-c------CCcEEEEEcCHHHHHhh-hcCC-CCCcChHHHHHH
Q 023493 154 TEVLKQLSSM---GRL-VVCA--GNGAVQSSANLALL-R------HGISLWIDVPPGMVARM-DHSG-FPESEVLPQLFA 218 (281)
Q Consensus 154 ~~vl~~l~~~---~~~-VIa~--G~g~v~~~~~~~~L-~------~~~vV~L~~s~e~l~~R-~~R~-r~~~~~~~~l~~ 218 (281)
...++++.+. ... ++.. ..+++.. ...+| + .+.+|+++||+++..+| .+|+ .+.+.....+..
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~--eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~~~~ 158 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVL--EIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEARLAS 158 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEE--EchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 2223332210 000 0000 0111110 01111 1 36899999999999999 6666 222233333444
Q ss_pred HHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhh
Q 023493 219 LYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRK 270 (281)
Q Consensus 219 ~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~ 270 (281)
+...+. .+..||+++++ +.++++...++.+.+..+...
T Consensus 159 Q~~~~e-k~~~ad~vi~n-------------~~~i~~l~~~i~~~~~~~~~~ 196 (201)
T COG0237 159 QRDLEE-KLALADVVIDN-------------DGSIENLLEQIEKLLKELLGL 196 (201)
T ss_pred cCCHHH-HHhhcCChhhc-------------CCCHHHHHHHHHHHHHHHHhh
Confidence 333322 24569999986 588999999998888877654
No 91
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.20 E-value=3.6e-10 Score=104.31 Aligned_cols=142 Identities=17% Similarity=0.211 Sum_probs=83.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCe--EEE
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL--VVC 169 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~--VIa 169 (281)
....|+|+|++||||||+++.|+ .+|+.++|.-.. .++.. |.+ .+..-...... +++
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~~-----------~L~~~-----l~~----~~~~~~~~~~~av~iD 63 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNLPP-----------SLLPK-----LVE----LLAQSGGIRKVAVVID 63 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECCcCH-----------HHHHH-----HHH----HHHhcCCCCCeEEEEc
Confidence 45689999999999999999996 579988865221 11111 110 01110001122 222
Q ss_pred eCC-cee-echhhHHhcc-CC---cEEEEEcCHHHHHhh-h--cCCCCCc---ChHHHHHHHHHHhhccccCCcEEEEcC
Q 023493 170 AGN-GAV-QSSANLALLR-HG---ISLWIDVPPGMVARM-D--HSGFPES---EVLPQLFALYKEMRDGYATADVTVSLQ 237 (281)
Q Consensus 170 ~G~-g~v-~~~~~~~~L~-~~---~vV~L~~s~e~l~~R-~--~R~r~~~---~~~~~l~~~~~~r~~~y~~ad~~Id~~ 237 (281)
.-. +.. ....++..|+ .+ .+|||+++++++.+| . ++.+|.. ...+.+....+.+.+.|+.||++||+
T Consensus 64 ~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDT- 142 (288)
T PRK05416 64 VRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDT- 142 (288)
T ss_pred cCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEEC-
Confidence 111 110 0123334444 33 579999999999999 3 2356632 12223333333335556679999985
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 238 KVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 238 ~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
++.++++++++|.+.+..
T Consensus 143 -----------s~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 143 -----------SELSVHQLRERIRERFGG 160 (288)
T ss_pred -----------CCCCHHHHHHHHHHHHhc
Confidence 689999999999998854
No 92
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.20 E-value=6.3e-10 Score=97.43 Aligned_cols=165 Identities=18% Similarity=0.205 Sum_probs=89.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcee----cCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCC---
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF----DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR--- 165 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~----d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~--- 165 (281)
.+.|+|.||.|+||||+|+.||+++|...+ +-+.++...+. ..-.+.|.- +.+|-....+-.++..+..+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~-d~~~yaf~~--QiyFL~~Rfk~~k~~~~~~~~i~ 80 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYE-DPERYAFLL--QIYFLLNRFKKIKKALSDKNNIL 80 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHH-hHHHhhHHH--HHHHHHHHHHHHHHHhccccccc
Confidence 578999999999999999999999996543 44455544443 111111110 11221111111111111111
Q ss_pred --eEEEeC---------Cceee------chhhHH----hc---c--CCcEEEEEcCHHHHHhh-hcCCCCCc-----C--
Q 023493 166 --LVVCAG---------NGAVQ------SSANLA----LL---R--HGISLWIDVPPGMVARM-DHSGFPES-----E-- 211 (281)
Q Consensus 166 --~VIa~G---------~g~v~------~~~~~~----~L---~--~~~vV~L~~s~e~l~~R-~~R~r~~~-----~-- 211 (281)
.|+..- .|.+. ..+-++ .+ + +++.|||+|+.+++.+| .+|||+.+ .
T Consensus 81 drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~~ 160 (216)
T COG1428 81 DRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEIDNFDENK 160 (216)
T ss_pred CcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcccccccchH
Confidence 111110 01100 001112 22 1 58999999999999999 88998843 1
Q ss_pred -hHHHHHHHHHHhhccccC-CcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 212 -VLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 212 -~~~~l~~~~~~r~~~y~~-ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
..+.+.+.|..+...|.. .++.|+.+ .++-...++-...++..|.+++.
T Consensus 161 ~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~---------~~D~~~~~~d~~~v~~~I~~~~~ 211 (216)
T COG1428 161 DYLKDLHRRYDDWFENYDACPVLGIDGD---------SIDFVNNEQDLEKVLDQILAKLK 211 (216)
T ss_pred HHHHHHHHHHHHHHHhcccCCeeeeccc---------eecccCCHHHHHHHHHHHHHHHh
Confidence 233444445544444432 45677653 44556667777777777776653
No 93
>PRK13973 thymidylate kinase; Provisional
Probab=99.19 E-value=1.5e-09 Score=95.74 Aligned_cols=162 Identities=15% Similarity=0.193 Sum_probs=88.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh---CCceecC--------chHHHHHhCCC---Ch-----HHHHHhhhhhhHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS--------DSLVFEAAGGE---SA-----AKAFRESDEKGYQQ 151 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l---~~~~~d~--------D~li~~~~g~~---~i-----~eif~~~ge~~fr~ 151 (281)
++|+.|+|.|++||||||+++.|++.| |+.++.+ ...+++...+. .. .-+|... .+..
T Consensus 1 m~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~---r~~~ 77 (213)
T PRK13973 1 MRGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAA---RDDH 77 (213)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHH---HHHH
Confidence 368899999999999999999999999 7777643 34444432200 00 0011110 0111
Q ss_pred HHHHHHHHHhcCCCeEEEeCC--------cee--echhh---HH-h----ccCCcEEEEEcCHHHHHhh-hcCCCC----
Q 023493 152 AETEVLKQLSSMGRLVVCAGN--------GAV--QSSAN---LA-L----LRHGISLWIDVPPGMVARM-DHSGFP---- 208 (281)
Q Consensus 152 ~e~~vl~~l~~~~~~VIa~G~--------g~v--~~~~~---~~-~----L~~~~vV~L~~s~e~l~~R-~~R~r~---- 208 (281)
.+.. +......+..||+..- |+. ..... +. . ..++++|||++|++++.+| .+|+..
T Consensus 78 ~~~~-i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~ 156 (213)
T PRK13973 78 VEEV-IRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPD 156 (213)
T ss_pred HHHH-HHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccC
Confidence 1112 2222334566776431 110 00001 11 1 1378999999999999999 555421
Q ss_pred --CcCh---HHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 209 --ESEV---LPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 209 --~~~~---~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
..+. ...+...|.+....|..--.+||. +.++|++..+|.+.+.+++.
T Consensus 157 ~~e~~~~~~~~~~~~~y~~l~~~~~~~~~~Ida-------------~~~~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 157 RFEKEDLAFHEKRREAFLQIAAQEPERCVVIDA-------------TASPEAVAAEIWAAVDQRLL 209 (213)
T ss_pred chhhchHHHHHHHHHHHHHHHHhCCCcEEEEcC-------------CCCHHHHHHHHHHHHHHHHh
Confidence 1111 122333333332222211145653 58999999999999987655
No 94
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.19 E-value=1.6e-09 Score=93.76 Aligned_cols=70 Identities=20% Similarity=0.261 Sum_probs=44.7
Q ss_pred CCcEEEEEcCHHHHHhh-hcCCCCC---cChHHHHHH---HHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHH
Q 023493 186 HGISLWIDVPPGMVARM-DHSGFPE---SEVLPQLFA---LYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTL 258 (281)
Q Consensus 186 ~~~vV~L~~s~e~l~~R-~~R~r~~---~~~~~~l~~---~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~ 258 (281)
++++|||++|++++.+| ..|+... ....+.+.+ .|......+....++||+ +.+++++..
T Consensus 128 pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~Id~-------------~~~~e~v~~ 194 (205)
T PRK00698 128 PDLTLYLDVPPEVGLARIRARGELDRIEQEGLDFFERVREGYLELAEKEPERIVVIDA-------------SQSLEEVHE 194 (205)
T ss_pred CCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeC-------------CCCHHHHHH
Confidence 68999999999999999 6665321 111122232 233222111123456764 479999999
Q ss_pred HHHHHHHHHH
Q 023493 259 EVLKEIEKLT 268 (281)
Q Consensus 259 ~Il~~i~~~~ 268 (281)
+|.+.+.+++
T Consensus 195 ~i~~~i~~~~ 204 (205)
T PRK00698 195 DILAVIKAWL 204 (205)
T ss_pred HHHHHHHHHh
Confidence 9999998775
No 95
>PRK08118 topology modulation protein; Reviewed
Probab=99.17 E-value=1.2e-10 Score=99.23 Aligned_cols=92 Identities=17% Similarity=0.291 Sum_probs=61.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCc
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g 173 (281)
+.|+|+|+|||||||+|+.|++.+++++++.|.+++..-. ... ..+.+ ..+++.+.....+|+. |.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w-~~~-------~~~~~----~~~~~~~~~~~~wVid-G~- 67 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNW-EGV-------PKEEQ----ITVQNELVKEDEWIID-GN- 67 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCC-cCC-------CHHHH----HHHHHHHhcCCCEEEe-CC-
Confidence 5799999999999999999999999999999998754211 100 00111 2234455545566664 32
Q ss_pred eeechhhH-Hhcc-CCcEEEEEcCHHHHHhh
Q 023493 174 AVQSSANL-ALLR-HGISLWIDVPPGMVARM 202 (281)
Q Consensus 174 ~v~~~~~~-~~L~-~~~vV~L~~s~e~l~~R 202 (281)
. .... ..+. .+.+|||++|.+.+..|
T Consensus 68 ~---~~~~~~~l~~~d~vi~Ld~p~~~~~~R 95 (167)
T PRK08118 68 Y---GGTMDIRLNAADTIIFLDIPRTICLYR 95 (167)
T ss_pred c---chHHHHHHHhCCEEEEEeCCHHHHHHH
Confidence 1 1111 1233 79999999999988877
No 96
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.17 E-value=6.2e-11 Score=107.29 Aligned_cols=188 Identities=17% Similarity=0.221 Sum_probs=109.6
Q ss_pred CcccccccCCCcchHHHHH-HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcee---cCchHHHHHhCC------
Q 023493 65 SNTVTKVAAEDPSFAVKKK-AADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF---DSDSLVFEAAGG------ 134 (281)
Q Consensus 65 ~~~~~~~~~~d~~~~~~~~-~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~---d~D~li~~~~g~------ 134 (281)
+.||..-.-+.|...++.+ ..-++. +.+.|++.|+.|||||++||.||++||+.++ ++|.+....+|+
T Consensus 44 p~p~~~k~y~~~~~~l~Dktskrf~e--nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~ 121 (393)
T KOG3877|consen 44 PEPWDYKHYFNYIDGLKDKTSKRFHE--NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLY 121 (393)
T ss_pred CCCcccccccchhhhhcchhhhhhcc--cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhcc
Confidence 3445444466666677766 555554 7789999999999999999999999997664 677776555551
Q ss_pred ------CC---hHHHHHh-hhhhhHHHHHHHH----HHHHhcCCCeEEEeCCceeechh---------------------
Q 023493 135 ------ES---AAKAFRE-SDEKGYQQAETEV----LKQLSSMGRLVVCAGNGAVQSSA--------------------- 179 (281)
Q Consensus 135 ------~~---i~eif~~-~ge~~fr~~e~~v----l~~l~~~~~~VIa~G~g~v~~~~--------------------- 179 (281)
.. +..++.. .++...+ +...+ +.+.+..-..|+.||.|+|+...
T Consensus 122 ~~~p~~cr~~di~~Fy~dPS~dlsa~-~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~ 200 (393)
T KOG3877|consen 122 NKFPARCRLPDISMFYKDPSGDLSAA-MQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEY 200 (393)
T ss_pred ccCCcccCchhHHHhccCCCccHHHH-HHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHH
Confidence 01 1111111 1111110 01000 00000011234555656554210
Q ss_pred -----------hHHhccCCcEEEEEcCHHHHHhh-hcCCCCCc------ChHHHHHHHHHHhhccccCCcEEEEcCcccc
Q 023493 180 -----------NLALLRHGISLWIDVPPGMVARM-DHSGFPES------EVLPQLFALYKEMRDGYATADVTVSLQKVAS 241 (281)
Q Consensus 180 -----------~~~~L~~~~vV~L~~s~e~l~~R-~~R~r~~~------~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~ 241 (281)
..++|.+++||||++|.+.+.++ ++||-+.+ ..+..+++.|++- |- .+ ++ ++++
T Consensus 201 ~~hYnevr~nti~~ll~PHLViYld~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~---fL-~e--~s--~h~e 272 (393)
T KOG3877|consen 201 FKHYNEVRKNTIPQLLWPHLVIYLDTPVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDS---FL-RE--YS--NHSE 272 (393)
T ss_pred HHHHHHHHhhhhhhhcCccEEEEEcCCcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHH---HH-HH--Hh--hhhh
Confidence 01234467999999999999999 77776632 2234444444432 10 11 11 3556
Q ss_pred ccccCCCCCCCHHHHHHHHHHH
Q 023493 242 QLGYDDLDAVTTEDMTLEVLKE 263 (281)
Q Consensus 242 ~l~~~dts~~speeva~~Il~~ 263 (281)
-|.|++|.....+.|++.|...
T Consensus 273 iL~Ydwt~~gdt~~VVEDIErl 294 (393)
T KOG3877|consen 273 ILAYDWTKPGDTDAVVEDIERL 294 (393)
T ss_pred eeeeecccCCCchhHHHhhhhh
Confidence 6778899999999999988764
No 97
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.15 E-value=3.1e-10 Score=97.30 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=77.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHhhhhhh----------------HHHHH-HH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESDEKG----------------YQQAE-TE 155 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~--~~i~eif~~~ge~~----------------fr~~e-~~ 155 (281)
.|+|+|++||||||+++.|++ +|++++|+|.+.++.+.. ....++...+|+.. |.+.+ ..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 389999999999999999999 999999999998876541 11233333333211 11100 01
Q ss_pred HHHH-------------HhcC--CCeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-hcC-CCCCcChHHHHHH
Q 023493 156 VLKQ-------------LSSM--GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLFA 218 (281)
Q Consensus 156 vl~~-------------l~~~--~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l~~ 218 (281)
.+.+ +... ...++..+ ..+.+..+. -..+.+||+++|.+++.+| ..| +.+.++....+..
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~--plL~e~~~~-~~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~~~~~r~~~ 156 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDI--PLLFETGLE-KLVDRVIVVDAPPEIQIERLMKRDGLSEEEAEARIAS 156 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEEe--hHhhcCCcH-HhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 1111 1111 12333221 111111110 0158999999999999999 544 5554344444444
Q ss_pred HHHHhhccccCCcEEEEcC
Q 023493 219 LYKEMRDGYATADVTVSLQ 237 (281)
Q Consensus 219 ~~~~r~~~y~~ad~~Id~~ 237 (281)
++.... .-..||++|+++
T Consensus 157 Q~~~~~-~~~~aD~vI~N~ 174 (179)
T cd02022 157 QMPLEE-KRARADFVIDNS 174 (179)
T ss_pred cCCHHH-HHHhCCEEEECc
Confidence 332211 112599999974
No 98
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.12 E-value=4e-10 Score=117.13 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=37.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~ 131 (281)
+++..|.|.|++||||||+|+.||++||+.|+|++.+++..
T Consensus 32 m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 32 MGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 55679999999999999999999999999999999988653
No 99
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.11 E-value=1.8e-09 Score=92.96 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=25.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
+|+.|+|.|++||||||+++.|++.++.
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999999853
No 100
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.09 E-value=2.8e-10 Score=98.21 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=77.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC-CC-hHHHHHhhhhhh----------------HHHHH-H
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES-AAKAFRESDEKG----------------YQQAE-T 154 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~-~~-i~eif~~~ge~~----------------fr~~e-~ 154 (281)
+.|.|+|..||||||+++.|++ +|++.+|+|.+..+.+.. .. ...+...+|... |.+.+ .
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4689999999999999999988 999999999998887641 11 223333333221 11111 1
Q ss_pred HHHHHH-------------hc--CCCeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh--hcCCCCCcChHHHH
Q 023493 155 EVLKQL-------------SS--MGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM--DHSGFPESEVLPQL 216 (281)
Q Consensus 155 ~vl~~l-------------~~--~~~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R--~~R~r~~~~~~~~l 216 (281)
+.|.++ .. ....++.... .+.+.++ .. .+.+|++.||.++..+| .++|++.++....+
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~p--LL~E~~~--~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri 155 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEIP--LLFESGL--EKLCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARI 155 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-T--TTTTTTG--GGGSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcc--hhhhhhH--hhhhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHH
Confidence 111111 11 1133333211 1122222 12 68999999999999999 45577765555555
Q ss_pred HHHHHHhhccccCCcEEEEcC
Q 023493 217 FALYKEMRDGYATADVTVSLQ 237 (281)
Q Consensus 217 ~~~~~~r~~~y~~ad~~Id~~ 237 (281)
..++.... ..+.||++|+++
T Consensus 156 ~~Q~~~~~-k~~~ad~vI~N~ 175 (180)
T PF01121_consen 156 ASQMPDEE-KRKRADFVIDNN 175 (180)
T ss_dssp HTS--HHH-HHHH-SEEEE-S
T ss_pred HhCCCHHH-HHHhCCEEEECC
Confidence 55543321 113599999974
No 101
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.07 E-value=6.1e-10 Score=95.60 Aligned_cols=152 Identities=16% Similarity=0.204 Sum_probs=79.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCce--ecCchHHHHHhCCCCh-HHHHH--hh---hhhhHHHHH---HHHHHHHh
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVFEAAGGESA-AKAFR--ES---DEKGYQQAE---TEVLKQLS 161 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~--~d~D~li~~~~g~~~i-~eif~--~~---ge~~fr~~e---~~vl~~l~ 161 (281)
|+.|+|.|+|.|||||+|+.|.+.+.-+| +..|.++..+-.+... ..-+. .. +...++... ...+..++
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a 80 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA 80 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998665 4567777642110000 00000 00 011222221 23445555
Q ss_pred cCCCeEEEeCCceeechh----hH-Hhcc-C-CcEEEEEcCHHHHHhh-hcCC-CCCcChHHHHHHHHHHhhcccc--CC
Q 023493 162 SMGRLVVCAGNGAVQSSA----NL-ALLR-H-GISLWIDVPPGMVARM-DHSG-FPESEVLPQLFALYKEMRDGYA--TA 230 (281)
Q Consensus 162 ~~~~~VIa~G~g~v~~~~----~~-~~L~-~-~~vV~L~~s~e~l~~R-~~R~-r~~~~~~~~l~~~~~~r~~~y~--~a 230 (281)
..+..||.. .++.... .+ .+|. . -+.|-+.||++++.+| ..|| |+... -+.+++ ..++ ..
T Consensus 81 ~aG~~VIvD--~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G~----a~~q~~---~Vh~~~~Y 151 (174)
T PF07931_consen 81 RAGNNVIVD--DVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIGL----AAWQAE---HVHEGGRY 151 (174)
T ss_dssp HTT-EEEEE--E--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTTH----HHHHTT---GGGTT---
T ss_pred hCCCCEEEe--cCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchHH----HHHHHh---hcccCCCC
Confidence 555555543 2222222 12 3444 2 3679999999999999 4444 44321 122222 2333 47
Q ss_pred cEEEEcCccccccccCCCCCCCHHHHHHHHHHHHH
Q 023493 231 DVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 231 d~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~ 265 (281)
|+.|| |+..+|++++++|++.++
T Consensus 152 DleVD------------Ts~~sp~ecA~~I~~~~~ 174 (174)
T PF07931_consen 152 DLEVD------------TSATSPEECAREILARLE 174 (174)
T ss_dssp SEEEE------------TTSS-HHHHHHHHHTT--
T ss_pred CEEEE------------CCCCCHHHHHHHHHHHhC
Confidence 88887 578999999999998763
No 102
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.05 E-value=2.8e-09 Score=91.84 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=35.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~ 132 (281)
+.|+|+|+|||||||+|+.||+.++++++|+|++.+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~ 39 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI 39 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh
Confidence 479999999999999999999999999999999887644
No 103
>PLN02924 thymidylate kinase
Probab=99.04 E-value=2.2e-08 Score=89.10 Aligned_cols=165 Identities=13% Similarity=0.179 Sum_probs=88.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCc--------h----HHHHHh-CCCCh-----HHHHHhhhhhhHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--------S----LVFEAA-GGESA-----AKAFRESDEKGYQQA 152 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D--------~----li~~~~-g~~~i-----~eif~~~ge~~fr~~ 152 (281)
-+|+.|+|.|++||||||+++.|++.|....+... . .+++.. ++..+ .-+|.....+ .
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~---~- 89 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWE---K- 89 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH---H-
Confidence 56889999999999999999999999864433221 1 122211 10000 0011111100 1
Q ss_pred HHHHHHHHhcCCCeEEEeCC---ceeec-----hhhH-H-----hccCCcEEEEEcCHHHHHhh-hcCCCCCc--ChHHH
Q 023493 153 ETEVLKQLSSMGRLVVCAGN---GAVQS-----SANL-A-----LLRHGISLWIDVPPGMVARM-DHSGFPES--EVLPQ 215 (281)
Q Consensus 153 e~~vl~~l~~~~~~VIa~G~---g~v~~-----~~~~-~-----~L~~~~vV~L~~s~e~l~~R-~~R~r~~~--~~~~~ 215 (281)
...+......+..||+... +.+.. ...| . ...++++|||++|+++..+| ..++...+ +....
T Consensus 90 -~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~~E~~~~~~r 168 (220)
T PLN02924 90 -RSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKK 168 (220)
T ss_pred -HHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccccHHHHHH
Confidence 1123333345566776421 00000 0111 1 11379999999999999999 33221121 12223
Q ss_pred HHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhhchhhHHhcCC
Q 023493 216 LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKKKMMEEAARP 280 (281)
Q Consensus 216 l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~~~~~~~~~~~ 280 (281)
++..|.+.. ...-.+||. +.+++++..+|.+.+.+.+. .=+|++|
T Consensus 169 v~~~Y~~la---~~~~~vIDa-------------~~sieeV~~~I~~~I~~~l~----~~~~~~~ 213 (220)
T PLN02924 169 VAKRFQTLR---DSSWKIIDA-------------SQSIEEVEKKIREVVLDTVQ----RCLAGKP 213 (220)
T ss_pred HHHHHHHHh---hcCEEEECC-------------CCCHHHHHHHHHHHHHHHHH----hccccCc
Confidence 333333322 112234553 58999999999999988765 2255555
No 104
>PRK13976 thymidylate kinase; Provisional
Probab=99.03 E-value=2.9e-08 Score=87.56 Aligned_cols=166 Identities=16% Similarity=0.181 Sum_probs=85.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCC-----cee----cC----chHHHHHhCCC-Ch---HH--HHHhhhhhhHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRY-----YYF----DS----DSLVFEAAGGE-SA---AK--AFRESDEKGYQQAET 154 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~-----~~~----d~----D~li~~~~g~~-~i---~e--if~~~ge~~fr~~e~ 154 (281)
+.|+|.|+.||||||+++.|++.|.- ..+ .. ...+++...+. .+ .+ +|.....+. . .
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~---~-~ 76 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH---F-V 76 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH---H-H
Confidence 46899999999999999999988743 221 11 12222222100 00 00 111111111 1 1
Q ss_pred HHHHHHhcCCCeEEEeCC--------cee--echhhHH----h---ccCCcEEEEEcCHHHHHhh-hcCCCCC--cChHH
Q 023493 155 EVLKQLSSMGRLVVCAGN--------GAV--QSSANLA----L---LRHGISLWIDVPPGMVARM-DHSGFPE--SEVLP 214 (281)
Q Consensus 155 ~vl~~l~~~~~~VIa~G~--------g~v--~~~~~~~----~---L~~~~vV~L~~s~e~l~~R-~~R~r~~--~~~~~ 214 (281)
+++......+..||+..- |.. ....... . ..+|++|||++|+++..+| ..++... .+...
T Consensus 77 ~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e~~~~~~l~ 156 (209)
T PRK13976 77 KVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYEFMDLEFYD 156 (209)
T ss_pred HHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchhcccHHHHH
Confidence 223333345667776421 100 0001111 1 1379999999999999999 5443321 12334
Q ss_pred HHHHHHHHhhccccCCcEEEEcCccccccccCC-CCCCCHHHHHHHHHHHHHHHHhhc
Q 023493 215 QLFALYKEMRDGYATADVTVSLQKVASQLGYDD-LDAVTTEDMTLEVLKEIEKLTRKK 271 (281)
Q Consensus 215 ~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~d-ts~~speeva~~Il~~i~~~~~~~ 271 (281)
.+...|.+....+...-.+|+.. ++ .+-.++|++.++|++.+.+.+..|
T Consensus 157 ~v~~~Y~~l~~~~~~~~~~id~~--------~~~~~~~~~e~v~~~i~~~i~~~~~~~ 206 (209)
T PRK13976 157 KVRKGFREIVIKNPHRCHVITCI--------DAKDNIEDINSVHLEIVKLLHAVTKDK 206 (209)
T ss_pred HHHHHHHHHHHhCCCCeEEEECC--------CCccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 45555555433332223456531 00 011249999999999999887443
No 105
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.03 E-value=2e-08 Score=85.06 Aligned_cols=159 Identities=16% Similarity=0.211 Sum_probs=91.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh-CCceecCchHHHHHhCCCC---hHHHHHhhhhhhHHHHHHHHHHHHhcCCC-eEE
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGES---AAKAFRESDEKGYQQAETEVLKQLSSMGR-LVV 168 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l-~~~~~d~D~li~~~~g~~~---i~eif~~~ge~~fr~~e~~vl~~l~~~~~-~VI 168 (281)
+.++++|.||+||||+.+.+.+.+ ++.+++-+++.-+...... ..+-....-.+..++....+.+++..+.. .++
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~iiv 84 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEIIV 84 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceEE
Confidence 789999999999999999999999 7778887777544322111 11111111122334444444445544433 444
Q ss_pred Ee------CCceeec-hh-hHHhccCCcEEEEEcCHHHHHhh---h-cCCCCCcChHHHHHHHH-HHhhcc--cc---CC
Q 023493 169 CA------GNGAVQS-SA-NLALLRHGISLWIDVPPGMVARM---D-HSGFPESEVLPQLFALY-KEMRDG--YA---TA 230 (281)
Q Consensus 169 a~------G~g~v~~-~~-~~~~L~~~~vV~L~~s~e~l~~R---~-~R~r~~~~~~~~l~~~~-~~r~~~--y~---~a 230 (281)
++ ..|.+.- +. -.+.|.++++|.|.++++.+..| + .|.|+.+. .+.+.... ..|... |. .+
T Consensus 85 DtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es-~e~i~eHqe~nR~aA~a~A~~~ga 163 (189)
T COG2019 85 DTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVES-VEEIREHQEMNRAAAMAYAILLGA 163 (189)
T ss_pred eccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhccccccccccc-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 43 3333322 21 23455689999999999998877 2 34455433 23333322 122111 22 24
Q ss_pred cE-EEEcCccccccccCCCCCCCHHHHHHHHHHHHH
Q 023493 231 DV-TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 231 d~-~Id~~~~a~~l~~~dts~~speeva~~Il~~i~ 265 (281)
.+ +|.+ .+..||+.+.+|.+.+.
T Consensus 164 tVkIV~n------------~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 164 TVKIVEN------------HEGDPEEAAEEIVELLD 187 (189)
T ss_pred eEEEEeC------------CCCCHHHHHHHHHHHHh
Confidence 43 4443 26799999999998875
No 106
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=99.01 E-value=1.6e-09 Score=90.47 Aligned_cols=156 Identities=19% Similarity=0.333 Sum_probs=88.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHh-hhhhhHHHHHHHHHHHHhcCCC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRE-SDEKGYQQAETEVLKQLSSMGR 165 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~li~~~~g~~~i~eif~~-~ge~~fr~~e~~vl~~l~~~~~ 165 (281)
+|..|+++|.+||||||+|.+|.+.|- ...+|.|++..-+.. ++ -|.+ +..++.|++- + +.++..+ .
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~--DL--~F~a~dR~ENIRRig-e-VaKLFAD-a 102 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK--DL--GFKAEDRNENIRRIG-E-VAKLFAD-A 102 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc--cc--CcchhhhhhhHHHHH-H-HHHHHhc-c
Confidence 799999999999999999999998773 345788887532221 11 1322 2334455432 2 3444443 2
Q ss_pred eEEEeCCceeec----hhhHHhcc-CC-cEEEEEcCHHHHHhhhcCCCCCcChHHHHHHHHHHhhcccc---CCcEEEEc
Q 023493 166 LVVCAGNGAVQS----SANLALLR-HG-ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA---TADVTVSL 236 (281)
Q Consensus 166 ~VIa~G~g~v~~----~~~~~~L~-~~-~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~~~r~~~y~---~ad~~Id~ 236 (281)
+||+-..-+..+ ...+++++ .+ +-||+++|.+++.+|+..|.........+.. |.--...|+ ++.+++..
T Consensus 103 g~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKg-FTGIddPYEaP~~cEi~l~~ 181 (207)
T KOG0635|consen 103 GVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKG-FTGIDDPYEAPLNCEIVLKS 181 (207)
T ss_pred ceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhcccccc-cccCCCcccCCCCcEEEEcc
Confidence 344432111111 12234555 34 5599999999999995444321000011111 122234555 35566664
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 237 QKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 237 ~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
+ +.-+|+++++.|...+.+
T Consensus 182 ~-----------~~~sp~~mae~iv~YL~~ 200 (207)
T KOG0635|consen 182 H-----------ESSSPEEMAEIIVSYLDN 200 (207)
T ss_pred C-----------CCCCHHHHHHHHHHHHhh
Confidence 2 556788899888877653
No 107
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.01 E-value=5.3e-09 Score=91.48 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=32.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC---CceecCchHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVF 129 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~---~~~~d~D~li~ 129 (281)
++..|.|+|++||||||+++.|++.++ +.+++.|.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 577899999999999999999999983 45678877653
No 108
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.1e-10 Score=114.70 Aligned_cols=77 Identities=26% Similarity=0.213 Sum_probs=68.7
Q ss_pred hhccCCccccccccccccCccccccc-----------CCCcch----HHHHHHHHHh------cccCCcEEEEEccCCCC
Q 023493 47 IISRKPRITTRSIADDTTSNTVTKVA-----------AEDPSF----AVKKKAADIS------TELKGTSVFLVGMNNAI 105 (281)
Q Consensus 47 ~~~r~~~~~~~~~~~~~~~~~~~~~~-----------~~d~~~----~~~~~~~e~~------~~~~~~~i~l~G~~GsG 105 (281)
....+++.+||||.+|-++.||++.+ .+|+++ +||+++.|+. +..+|+++.|+||||.|
T Consensus 371 e~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVG 450 (906)
T KOG2004|consen 371 EPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVG 450 (906)
T ss_pred CccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCC
Confidence 56688999999999999999998887 677764 9999998865 45889999999999999
Q ss_pred HHHHHHHHHHHhCCceec
Q 023493 106 KTHLGKFLADALRYYYFD 123 (281)
Q Consensus 106 Kstvak~La~~l~~~~~d 123 (281)
||++||.+|..||..|+.
T Consensus 451 KTSI~kSIA~ALnRkFfR 468 (906)
T KOG2004|consen 451 KTSIAKSIARALNRKFFR 468 (906)
T ss_pred cccHHHHHHHHhCCceEE
Confidence 999999999999999875
No 109
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.99 E-value=3.3e-09 Score=97.05 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=81.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHh-cCC--CeEEEe
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLS-SMG--RLVVCA 170 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~-~~~--~~VIa~ 170 (281)
..|+|+|++||||||..+.| |.+||.++|. +-..+ +.. |.+ .+.+-. ... ..+|+.
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN--lP~~L---------l~~-----l~~----~~~~~~~~~~~~Ai~iD~ 60 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN--LPPSL---------LPQ-----LIE----LLAQSNSKIEKVAIVIDI 60 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC--CcHHH---------HHH-----HHH----HHHhcCCCCceEEEEEeC
Confidence 47899999999999999999 7799999985 32211 111 110 011000 011 123332
Q ss_pred CCceeec--hhhHHhcc-C---CcEEEEEcCHHHHHhh---hcCCCCCc---ChHHHHHHHHHHhhccccCCcEEEEcCc
Q 023493 171 GNGAVQS--SANLALLR-H---GISLWIDVPPGMVARM---DHSGFPES---EVLPQLFALYKEMRDGYATADVTVSLQK 238 (281)
Q Consensus 171 G~g~v~~--~~~~~~L~-~---~~vV~L~~s~e~l~~R---~~R~r~~~---~~~~~l~~~~~~r~~~y~~ad~~Id~~~ 238 (281)
-++.... ......++ . -.+|||+|+.+++.+| .+|..|.. ...+.++.-.+...+..+.||++||
T Consensus 61 R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vID--- 137 (284)
T PF03668_consen 61 RSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVID--- 137 (284)
T ss_pred CChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEEE---
Confidence 2211110 11112222 2 3689999999999999 34555522 2233343332333445457999998
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHH
Q 023493 239 VASQLGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 239 ~a~~l~~~dts~~speeva~~Il~~i~ 265 (281)
|+++++.+....|.+.+.
T Consensus 138 ---------Ts~l~~~~Lr~~i~~~~~ 155 (284)
T PF03668_consen 138 ---------TSNLSVHQLRERIRERFG 155 (284)
T ss_pred ---------CCCCCHHHHHHHHHHHhc
Confidence 579999999999998876
No 110
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.97 E-value=1.8e-10 Score=117.40 Aligned_cols=144 Identities=15% Similarity=0.258 Sum_probs=92.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChH-HHHHhhhhhhHHHHHHHHHHHHhc-CCCeEE
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRESDEKGYQQAETEVLKQLSS-MGRLVV 168 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~-eif~~~ge~~fr~~e~~vl~~l~~-~~~~VI 168 (281)
.....|+++|.||+||||+|+.|++.|+|.++++|.+....++ +.+. ..+...++..|+..|.++...+.. ..+.++
T Consensus 213 ~~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~r-r~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~ 291 (664)
T PTZ00322 213 MGSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYR-RRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFIC 291 (664)
T ss_pred ccceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhH-hhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4467899999999999999999999999999988877655554 3222 234444666777777766666553 234566
Q ss_pred EeCCceeechhhHH---------hcc-CC-----cEEEEEc--CHHHHHhh-hcCC---CC--CcChHHHHHHHHHHhhc
Q 023493 169 CAGNGAVQSSANLA---------LLR-HG-----ISLWIDV--PPGMVARM-DHSG---FP--ESEVLPQLFALYKEMRD 225 (281)
Q Consensus 169 a~G~g~v~~~~~~~---------~L~-~~-----~vV~L~~--s~e~l~~R-~~R~---r~--~~~~~~~l~~~~~~r~~ 225 (281)
.+|+++|.+..|.. .++ .+ .+|||++ +...+.+| ..|+ .+ .++....+.+.+++|.+
T Consensus 292 ~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~~~~~ 371 (664)
T PTZ00322 292 KTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIEQLEA 371 (664)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 66776776653321 122 22 4777776 44444444 2222 11 12344667778888999
Q ss_pred cccCCcEEEE
Q 023493 226 GYATADVTVS 235 (281)
Q Consensus 226 ~y~~ad~~Id 235 (281)
.|+.++..++
T Consensus 372 ~Ye~~~~~~d 381 (664)
T PTZ00322 372 VYKSLNPVTD 381 (664)
T ss_pred hcccCCcccc
Confidence 9987664444
No 111
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.97 E-value=7.2e-09 Score=89.83 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=29.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh---CCceecCchHHH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVF 129 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l---~~~~~d~D~li~ 129 (281)
.|.|+|++||||||+++.|+..+ +..+++.|++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 47899999999999999999987 366788887664
No 112
>PRK09183 transposase/IS protein; Provisional
Probab=98.97 E-value=3.1e-10 Score=103.24 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=80.9
Q ss_pred CCCCCCCChhhhhhhhcccCcccccchhhhhccCCccccccccccccCcccccccCCCcch--HHHHH-HHHHhcc---c
Q 023493 18 TPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSF--AVKKK-AADISTE---L 91 (281)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~e~~~~---~ 91 (281)
...+++|.++|..|++. |...|+.+.+.|+++.+.++. ..+++.||+++ .+++. +.++..+ .
T Consensus 33 ~~~~~~~~e~l~~ll~~-----------E~~~R~~~~~~~~~k~a~~p~-~~~l~~fd~~~~~~~~~~~i~~L~~~~~i~ 100 (259)
T PRK09183 33 VDQEWSYMDFLEHLLHE-----------EKLARHQRKQAMYTRMAAFPA-VKTFEEYDFTFATGAPQKQLQSLRSLSFIE 100 (259)
T ss_pred hhcCCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhCCCCC-CCcHhhcccccCCCCCHHHHHHHhcCCchh
Confidence 45789999999999999 999999999999999999988 58999999997 55544 6777654 5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCchHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLV 128 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~li 128 (281)
++.+++|+|++|+||||++..|+..+ | +.|++..+++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 68899999999999999999997543 3 3345544444
No 113
>PRK13974 thymidylate kinase; Provisional
Probab=98.97 E-value=4.6e-08 Score=86.19 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=25.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
+|..|+|.|++||||||+++.|++.+.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999998875
No 114
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.96 E-value=3e-08 Score=87.83 Aligned_cols=28 Identities=32% Similarity=0.328 Sum_probs=25.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
.|+|.|+.||||||+++.|++.+++.++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 4889999999999999999999987554
No 115
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.94 E-value=3.9e-08 Score=86.75 Aligned_cols=162 Identities=20% Similarity=0.277 Sum_probs=87.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCce---e----cC----chHHHHHhCCC-----Ch--HHHHHhhhhhhHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYY---F----DS----DSLVFEAAGGE-----SA--AKAFRESDEKGYQQA 152 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~---~----d~----D~li~~~~g~~-----~i--~eif~~~ge~~fr~~ 152 (281)
.+|+.|+|.|+.||||||+++.|++.|.-.. + .+ +..+++..-.. +. .-+|..... ...
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~---~h~ 77 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRA---QHL 77 (208)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHH---HHH
Confidence 3689999999999999999999998874332 2 11 22233221100 00 001111100 011
Q ss_pred HHHHHHHHhcCCCeEEEeCC---ceee-------chhhHH-----hc---cCCcEEEEEcCHHHHHhh-hcCCCC----C
Q 023493 153 ETEVLKQLSSMGRLVVCAGN---GAVQ-------SSANLA-----LL---RHGISLWIDVPPGMVARM-DHSGFP----E 209 (281)
Q Consensus 153 e~~vl~~l~~~~~~VIa~G~---g~v~-------~~~~~~-----~L---~~~~vV~L~~s~e~l~~R-~~R~r~----~ 209 (281)
+. .+......+.+||+..- +.+. ..+... .. .+++++||++|+++..+| .+|+.. .
T Consensus 78 ~~-~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E 156 (208)
T COG0125 78 EE-VIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFE 156 (208)
T ss_pred HH-HHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhh
Confidence 11 22222234567776420 0000 011111 12 368999999999999999 555332 1
Q ss_pred -cC--hHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 210 -SE--VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 210 -~~--~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
.+ ..+.++..|.+....+...-++||. +.+++++.++|.+.+...+.
T Consensus 157 ~~~~~f~~kvr~~Y~~la~~~~~r~~vIda-------------~~~~e~v~~~i~~~l~~~l~ 206 (208)
T COG0125 157 KEDDEFLEKVREGYLELAAKFPERIIVIDA-------------SRPLEEVHEEILKILKERLG 206 (208)
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCeEEEEEC-------------CCCHHHHHHHHHHHHHHhhc
Confidence 11 1233344444433322222367875 57899999999999998765
No 116
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.91 E-value=1.2e-08 Score=89.25 Aligned_cols=138 Identities=19% Similarity=0.200 Sum_probs=71.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC---CceecC--chHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEE
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALR---YYYFDS--DSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~---~~~~d~--D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VI 168 (281)
+.|+|+|+|||||||+|+.||+.|. +..++. |..+-=... .+.+ +.++.-.+.|.+.....+-.... ...||
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~D-Eslp-i~ke~yres~~ks~~rlldSalk-n~~VI 78 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWD-ESLP-ILKEVYRESFLKSVERLLDSALK-NYLVI 78 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecc-cccc-hHHHHHHHHHHHHHHHHHHHHhc-ceEEE
Confidence 5799999999999999999998884 433333 222100001 1111 22222223333222222322222 34566
Q ss_pred EeCCceeec-hhh--HHhc--c-CCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhcc---cc--CCcEEEEc
Q 023493 169 CAGNGAVQS-SAN--LALL--R-HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDG---YA--TADVTVSL 236 (281)
Q Consensus 169 a~G~g~v~~-~~~--~~~L--~-~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~---y~--~ad~~Id~ 236 (281)
+..-+..-. ... +... . ...+||+.+|+|++.+| ..||-|..+ +-++++|.++++. +. .+-++|+.
T Consensus 79 vDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~--Evl~qly~RfEePn~~~rWDspll~id~ 156 (261)
T COG4088 79 VDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPE--EVLRQLYDRFEEPNPDRRWDSPLLVIDD 156 (261)
T ss_pred EecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCH--HHHHHHHHhhcCCCCCccccCceEEEec
Confidence 542111100 011 1111 1 35789999999999999 666666322 3456666655442 22 25577773
No 117
>PRK07261 topology modulation protein; Provisional
Probab=98.90 E-value=4.3e-09 Score=89.85 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=59.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCc
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g 173 (281)
+.|+|+|+|||||||+|+.|++.+++++++.|.+.... + . .....+.+.. .+..+.....+||. |.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-~------~-~~~~~~~~~~----~~~~~~~~~~wIid-g~- 66 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-N------W-QERDDDDMIA----DISNFLLKHDWIID-GN- 66 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-c------c-ccCCHHHHHH----HHHHHHhCCCEEEc-Cc-
Confidence 46999999999999999999999999999999875421 1 0 0111111221 12333334455553 32
Q ss_pred eeechhhHHhcc-CCcEEEEEcCHHHHHhh
Q 023493 174 AVQSSANLALLR-HGISLWIDVPPGMVARM 202 (281)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R 202 (281)
.........+. .+.+|||++|...+..|
T Consensus 67 -~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R 95 (171)
T PRK07261 67 -YSWCLYEERMQEADQIIFLNFSRFNCLYR 95 (171)
T ss_pred -chhhhHHHHHHHCCEEEEEcCCHHHHHHH
Confidence 11111112233 78999999999998877
No 118
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.89 E-value=1.2e-08 Score=84.70 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=59.2
Q ss_pred EEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhhhhhHHHHHHHHHH-HHhc---CCCeEE
Q 023493 98 LVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLK-QLSS---MGRLVV 168 (281)
Q Consensus 98 l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~-----i~eif~~~ge~~fr~~e~~vl~-~l~~---~~~~VI 168 (281)
|+|+|||||||+|+.||+++|+.+++.++++++.....+ +.+... .|...-.+.-..++. .+.. ...+|+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~-~g~~vp~~~v~~ll~~~l~~~~~~~g~il 79 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLD-NGELVPDELVIELLKERLEQPPCNRGFIL 79 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHH-TTSS--HHHHHHHHHHHHHSGGTTTEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHH-hhccchHHHHHHHHHHHHhhhcccceeee
Confidence 689999999999999999999999999999887643121 122222 132211222222222 2221 223444
Q ss_pred EeCCceeechhhHHh----c-----cCCcEEEEEcCHHHHHhh
Q 023493 169 CAGNGAVQSSANLAL----L-----RHGISLWIDVPPGMVARM 202 (281)
Q Consensus 169 a~G~g~v~~~~~~~~----L-----~~~~vV~L~~s~e~l~~R 202 (281)
. |++........ + ..+.+|+|++|.+.+.+|
T Consensus 80 d---GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R 119 (151)
T PF00406_consen 80 D---GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIER 119 (151)
T ss_dssp E---SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHH
T ss_pred e---eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhh
Confidence 3 45544332221 1 146899999999999999
No 119
>PRK06526 transposase; Provisional
Probab=98.88 E-value=9.2e-10 Score=99.92 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=74.7
Q ss_pred CCCCCCCChhhhhhhhcccCcccccchhhhhccCCccccccccccccCcccccccCCCcch--HHHHH-HHHHhcc---c
Q 023493 18 TPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSF--AVKKK-AADISTE---L 91 (281)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~e~~~~---~ 91 (281)
...+++|.++|..|++. |...|..+.+.++++++.++. ..+++.||++. .+++. +.+++.+ -
T Consensus 29 ~~~~~~~~e~l~~ll~~-----------E~~~R~~~~~~~~lk~a~~p~-~~~le~fd~~~~~~~~~~~~~~l~~~~fi~ 96 (254)
T PRK06526 29 RAESWSHEEFLAACLQR-----------EVAARESHGGEGRIRAARFPA-RKSLEEFDFDHQRSLKRDTIAHLGTLDFVT 96 (254)
T ss_pred hhcCCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhCCCCC-CCChhhccCccCCCcchHHHHHHhcCchhh
Confidence 34679999999999999 999999999999999999987 48999999986 55544 6666554 4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+.+++|+|+||+|||+++..|+..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 57889999999999999999998643
No 120
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.2e-09 Score=109.48 Aligned_cols=78 Identities=26% Similarity=0.194 Sum_probs=67.6
Q ss_pred hhccCCccccccccccccCccccccc-----------CCCcch----HHHHHHHHHh------cccCCcEEEEEccCCCC
Q 023493 47 IISRKPRITTRSIADDTTSNTVTKVA-----------AEDPSF----AVKKKAADIS------TELKGTSVFLVGMNNAI 105 (281)
Q Consensus 47 ~~~r~~~~~~~~~~~~~~~~~~~~~~-----------~~d~~~----~~~~~~~e~~------~~~~~~~i~l~G~~GsG 105 (281)
...+++..+.|||.+|-++.||...+ .+|.++ ++|+|+.|.. +.++|..+.|+||||+|
T Consensus 283 ~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVG 362 (782)
T COG0466 283 SPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVG 362 (782)
T ss_pred CCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCC
Confidence 34578889999999999999997776 677764 8999988754 56999999999999999
Q ss_pred HHHHHHHHHHHhCCceecC
Q 023493 106 KTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 106 Kstvak~La~~l~~~~~d~ 124 (281)
||++|+.+|+.+|..|+..
T Consensus 363 KTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 363 KTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred chhHHHHHHHHhCCCEEEE
Confidence 9999999999999999753
No 121
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.87 E-value=4.1e-09 Score=87.95 Aligned_cols=106 Identities=21% Similarity=0.343 Sum_probs=59.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh---C--CceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEE
Q 023493 95 SVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa 169 (281)
.|+|+|.|||||||+++.|++.+ | +.+++.|.+.....+.... ......+.++... .....+...+..||.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~---~~~~~~~~~~~~~-~~a~~l~~~G~~VIi 76 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGF---SREDREENIRRIA-EVAKLLADAGLIVIA 76 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCC---CcchHHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 37899999999999999999988 5 3567888776543321110 0111122232221 122233334444444
Q ss_pred eCCceeechhhHH----hcc--CCcEEEEEcCHHHHHhhhcCC
Q 023493 170 AGNGAVQSSANLA----LLR--HGISLWIDVPPGMVARMDHSG 206 (281)
Q Consensus 170 ~G~g~v~~~~~~~----~L~--~~~vV~L~~s~e~l~~R~~R~ 206 (281)
... . .....+. +++ .-.+|||++|.+++.+|..+|
T Consensus 77 d~~-~-~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~~ 117 (149)
T cd02027 77 AFI-S-PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKG 117 (149)
T ss_pred ccC-C-CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCchh
Confidence 322 1 1222222 222 236799999999999994444
No 122
>PLN02165 adenylate isopentenyltransferase
Probab=98.85 E-value=1.2e-08 Score=95.76 Aligned_cols=132 Identities=17% Similarity=0.292 Sum_probs=84.3
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH--------------HHHHhCCCC---hHHHHHhhhh---hh
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGES---AAKAFRESDE---KG 148 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l--------------i~~~~g~~~---i~eif~~~ge---~~ 148 (281)
...++.+|+|+|++|||||+++..||+.+++.++++|.+ .++..| .. +..+....+. ..
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~g-v~Hhli~~~~~~~~~~sv~~ 117 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRG-VPHHLLGELNPDDGELTASE 117 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcC-CChhhhheeccccceeeHHH
Confidence 335788999999999999999999999999999999987 344444 22 2112222222 45
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCceee-----c----hhh---------H-Hhcc-CCcEEEEEcCHHHHHhh-hcC--
Q 023493 149 YQQAETEVLKQLSSMGRLVVCAGNGAVQ-----S----SAN---------L-ALLR-HGISLWIDVPPGMVARM-DHS-- 205 (281)
Q Consensus 149 fr~~e~~vl~~l~~~~~~VIa~G~g~v~-----~----~~~---------~-~~L~-~~~vV~L~~s~e~l~~R-~~R-- 205 (281)
|++....++..+...+...|.+||.... . +.. . ..++ ..+++||+.+.+.+.+| +.|
T Consensus 118 F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rvd 197 (334)
T PLN02165 118 FRSLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRVD 197 (334)
T ss_pred HHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHHH
Confidence 6666667777777667777777764311 1 000 0 0012 23578999999999999 554
Q ss_pred CCCCcChHHHHHHHHH
Q 023493 206 GFPESEVLPQLFALYK 221 (281)
Q Consensus 206 ~r~~~~~~~~l~~~~~ 221 (281)
.+-.....+++..+++
T Consensus 198 ~Ml~~GlldEv~~L~~ 213 (334)
T PLN02165 198 EMMDSGMFEELAEFYD 213 (334)
T ss_pred HHHHCCHHHHHHHHHH
Confidence 2222334456666654
No 123
>PRK06696 uridine kinase; Validated
Probab=98.84 E-value=6.3e-08 Score=85.83 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=30.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---CCcee--cCchHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF--DSDSLV 128 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~~~~~--d~D~li 128 (281)
+...|.|.|++||||||+|+.|++.| |...+ .+|+++
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 46789999999999999999999998 55543 477765
No 124
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.83 E-value=2.4e-08 Score=86.74 Aligned_cols=155 Identities=15% Similarity=0.103 Sum_probs=79.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHH-HHHhC---CC-----ChHHHHHh--hh---------hhhHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV-FEAAG---GE-----SAAKAFRE--SD---------EKGYQQ 151 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li-~~~~g---~~-----~i~eif~~--~g---------e~~fr~ 151 (281)
+|..|+|+|++||||||+++.|+..++..++.....- .-..| +. +..++-.. .+ ...|..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 6889999999999999999999998752111110000 00000 00 00000000 00 000100
Q ss_pred HHHHHHHHHhcCCCeEEEeCCceeechhhHHhc----cCCcEEEE-EcCHHHHHhh-hcCCCCCcC-hHHHHHHHHHHhh
Q 023493 152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLALL----RHGISLWI-DVPPGMVARM-DHSGFPESE-VLPQLFALYKEMR 224 (281)
Q Consensus 152 ~e~~vl~~l~~~~~~VIa~G~g~v~~~~~~~~L----~~~~vV~L-~~s~e~l~~R-~~R~r~~~~-~~~~l~~~~~~r~ 224 (281)
....+......+..||... +......+ ...++||+ .++.+.+.+| ..|+...++ ....+.....+.
T Consensus 84 -~~~~i~~~l~~g~~vi~dl-----~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~- 156 (205)
T PRK00300 84 -PRSPVEEALAAGKDVLLEI-----DWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEI- 156 (205)
T ss_pred -cHHHHHHHHHcCCeEEEeC-----CHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-
Confidence 1122344434444444332 11222222 23455666 4567888888 777754322 333344433332
Q ss_pred ccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 225 DGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 225 ~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
..+..+|.+|.+ .+++++..++.+.+...
T Consensus 157 ~~~~~~d~vi~n--------------~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 157 AHASEYDYVIVN--------------DDLDTALEELKAIIRAE 185 (205)
T ss_pred HhHHhCCEEEEC--------------CCHHHHHHHHHHHHHHH
Confidence 234458888863 37999999999999876
No 125
>PRK08181 transposase; Validated
Probab=98.82 E-value=2e-09 Score=98.52 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=80.1
Q ss_pred CCCCCCCChhhhhhhhcccCcccccchhhhhccCCccccccccccccCcccccccCCCcch--HHHHH-HHHHhcc----
Q 023493 18 TPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSF--AVKKK-AADISTE---- 90 (281)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~e~~~~---- 90 (281)
...+++|.++|..|++. |...|..+.+.|.++.+.++. ..++..||++. .+.+. ...++.+
T Consensus 36 ~~~~~~~~e~L~~ll~~-----------E~~~R~~~~~~r~lk~A~~p~-~~tle~fd~~~~~~~~~~~~~~L~~~~~~~ 103 (269)
T PRK08181 36 DKEGWPAARFLAAIAEH-----------ELAERARRRIERHLAEAHLPP-GKTLDSFDFEAVPMVSKAQVMAIAAGDSWL 103 (269)
T ss_pred hhcCCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCCCCC-CCCHhhCCccCCCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999 999999999999999999986 58899999885 33333 4444322
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCchHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFE 130 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~li~~ 130 (281)
-++.+++|+|++|+|||+++..++..+ | +.|+++.+++..
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 267889999999999999999998543 4 556777666654
No 126
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.81 E-value=8e-08 Score=83.62 Aligned_cols=158 Identities=18% Similarity=0.130 Sum_probs=93.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhhhh----------------hHHHHH--
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEK----------------GYQQAE-- 153 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g--~~~i~eif~~~ge~----------------~fr~~e-- 153 (281)
..|.|+|..||||||+++.+- ++|++.+|+|.+.++... ...-..+.+.+|.+ .|.+.+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 368899999999999999995 899999999999877543 11112222222211 121111
Q ss_pred ----------------HHHHHHHhcCCCeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC-CCCCcChHH
Q 023493 154 ----------------TEVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESEVLP 214 (281)
Q Consensus 154 ----------------~~vl~~l~~~~~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~ 214 (281)
.+.+..+....+++|-.- .++.+. .+++ .+.+|.+.||.+...+| -.| +.+.++...
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDi--PLLFE~--~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~ 156 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDI--PLLFEA--KLLKICHKTVVVTCDEELQLERLVERDELSEEDAEN 156 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEec--hHHHHH--hHHhheeeEEEEEECcHHHHHHHHHhccccHHHHHH
Confidence 111222223333333210 111122 1223 46788899999999999 444 444444555
Q ss_pred HHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhh
Q 023493 215 QLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRK 270 (281)
Q Consensus 215 ~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~ 270 (281)
.+.+++.-- ...+.|+++|++ +.++++..++|...+...-+.
T Consensus 157 Rl~sQmp~~-~k~~~a~~Vi~N-------------ng~~~~l~~qv~~v~~~~~~s 198 (225)
T KOG3220|consen 157 RLQSQMPLE-KKCELADVVIDN-------------NGSLEDLYEQVEKVLALLQKS 198 (225)
T ss_pred HHHhcCCHH-HHHHhhheeecC-------------CCChHHHHHHHHHHHHHhcch
Confidence 565554221 122359999996 689999888888877655444
No 127
>PRK07933 thymidylate kinase; Validated
Probab=98.80 E-value=1.9e-07 Score=82.57 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=23.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
+.|+|.|+.||||||+++.|++.|.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999884
No 128
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.76 E-value=7.2e-09 Score=82.26 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=31.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchHH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li 128 (281)
.|+|+|+|||||||+|+.||+.+|+++++.|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 5899999999999999999999999999999954
No 129
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.75 E-value=7.5e-08 Score=81.81 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=24.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
|+.|+|+|++||||||+++.|++.++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 578999999999999999999987654
No 130
>PTZ00301 uridine kinase; Provisional
Probab=98.74 E-value=1.5e-07 Score=83.23 Aligned_cols=38 Identities=16% Similarity=0.042 Sum_probs=29.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----C---CceecCchHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R---YYYFDSDSLVF 129 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l----~---~~~~d~D~li~ 129 (281)
+-..|.|.|+|||||||+|+.|++.+ | ...+..|.++.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 44789999999999999999998776 2 23556676653
No 131
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.74 E-value=3e-07 Score=80.50 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=32.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~ 130 (281)
.++.|+++|+|||||||+|+.|++.+|+.++...+++++
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~ 40 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLRE 40 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHH
Confidence 567899999999999999999999999987655555444
No 132
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.74 E-value=1.5e-07 Score=84.85 Aligned_cols=140 Identities=15% Similarity=0.208 Sum_probs=83.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHh---cCCCeEEEe
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLS---SMGRLVVCA 170 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~---~~~~~VIa~ 170 (281)
..|+|+|++|||||+..+.| |.+||.++|. +-.+ +..+ |.+ ++.... ..-..+|+.
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN--LPp~---------Llp~-----~~~----~~~~~~~~~~kvAv~iDi 60 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN--LPPQ---------LLPK-----LAD----LMLTLESRITKVAVVIDV 60 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeeecC--CCHH---------HHHH-----HHH----HHhhcccCCceEEEEEec
Confidence 46899999999999999999 6799998874 3211 1111 111 011000 011233333
Q ss_pred CCceeec--hhhHHhcc-C----CcEEEEEcCHHHHHhh--h-cCCCCCc--C-hHHHHHHHHHHhhccccCCcEEEEcC
Q 023493 171 GNGAVQS--SANLALLR-H----GISLWIDVPPGMVARM--D-HSGFPES--E-VLPQLFALYKEMRDGYATADVTVSLQ 237 (281)
Q Consensus 171 G~g~v~~--~~~~~~L~-~----~~vV~L~~s~e~l~~R--~-~R~r~~~--~-~~~~l~~~~~~r~~~y~~ad~~Id~~ 237 (281)
.++.... ......++ . -.++||+++.+++.+| + +|..|.. . ..+.+..-.+-..|+.+.||++||
T Consensus 61 Rs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vID-- 138 (286)
T COG1660 61 RSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVID-- 138 (286)
T ss_pred ccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEee--
Confidence 2221110 11122343 3 2579999999999999 3 4555532 1 233333322223455567999998
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 238 KVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 238 ~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
|+++++-+..+.|.+.+..
T Consensus 139 ----------Ts~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 139 ----------TSELSVHELRERIRTRFLG 157 (286)
T ss_pred ----------cccCCHHHHHHHHHHHHcc
Confidence 5799999999999998875
No 133
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.73 E-value=2.2e-07 Score=79.99 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=25.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
.|+|.|++||||||+++.|++.+|+.++.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~ 29 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVP 29 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcccc
Confidence 38899999999999999999998876653
No 134
>COG0645 Predicted kinase [General function prediction only]
Probab=98.73 E-value=2.5e-07 Score=78.56 Aligned_cols=131 Identities=18% Similarity=0.136 Sum_probs=77.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChH-----HHHHhh-hhhhHHHHHHHHHHHHhcCCCeE
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-----KAFRES-DEKGYQQAETEVLKQLSSMGRLV 167 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~-----eif~~~-ge~~fr~~e~~vl~~l~~~~~~V 167 (281)
+.+++.|.||+||||+|+.|++.+|...+.+|.+.+.+.| .+.. +++... ....|..+......-+ ..+..|
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g-~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l-~~G~~V 79 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG-VPEETRGPAGLYSPAATAAVYDELLGRAELLL-SSGHSV 79 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC-CcccccCCCCCCcHHHHHHHHHHHHHHHHHHH-hCCCcE
Confidence 5688899999999999999999999999999998888777 3211 011100 1112222221111222 223333
Q ss_pred EEeCCceeechhhHHhc----c-C---CcEEEEEcCHHHHHhh-hcC-CCCCcChHHHHHHHHHHhhcccc
Q 023493 168 VCAGNGAVQSSANLALL----R-H---GISLWIDVPPGMVARM-DHS-GFPESEVLPQLFALYKEMRDGYA 228 (281)
Q Consensus 168 Ia~G~g~v~~~~~~~~L----~-~---~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l~~~~~~r~~~y~ 228 (281)
|..+ ....+..++.. + . -..|++.+|.+++.+| ..| +-+.+.....+..+..+..++.+
T Consensus 80 VlDa--~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~~il~~q~~~~~~~~~ 148 (170)
T COG0645 80 VLDA--TFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDASDATFDILRVQLAEDEPWTE 148 (170)
T ss_pred EEec--ccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcccchHHHHHHHHhhhCCccc
Confidence 3321 22233333322 2 2 2569999999999999 444 42333445666777677666554
No 135
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.73 E-value=1.5e-07 Score=83.84 Aligned_cols=143 Identities=20% Similarity=0.248 Sum_probs=76.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCc-----e-ecCchHH-----HHHhCCCChHHHHHhhhhhhHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY-----Y-FDSDSLV-----FEAAGGESAAKAFRESDEKGYQQAETEVLKQ 159 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~-----~-~d~D~li-----~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~ 159 (281)
-++..|.|+|++||||||+++.|+..+... . +..|++. ....|...............+. +++..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~----~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLA----ALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHH----HHHHH
Confidence 567899999999999999999999877531 1 4444322 1111200000000000000111 11111
Q ss_pred Hh--------------------------cCCCeEEEeCCceeechhhHHhcc--CCcEEEEEcCHHHHHhh-hcC----C
Q 023493 160 LS--------------------------SMGRLVVCAGNGAVQSSANLALLR--HGISLWIDVPPGMVARM-DHS----G 206 (281)
Q Consensus 160 l~--------------------------~~~~~VIa~G~g~v~~~~~~~~L~--~~~vV~L~~s~e~l~~R-~~R----~ 206 (281)
+. .....||..|.+.......|..+. .+.+|||++|.+.+.+| ..| |
T Consensus 107 l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~~~~g 186 (229)
T PRK09270 107 LRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKLAGG 186 (229)
T ss_pred HHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhcC
Confidence 11 023456666766655545565454 68999999999999999 444 5
Q ss_pred CCCcChHHHHHH-HHHH---hhccccCCcEEEEcC
Q 023493 207 FPESEVLPQLFA-LYKE---MRDGYATADVTVSLQ 237 (281)
Q Consensus 207 r~~~~~~~~l~~-~~~~---r~~~y~~ad~~Id~~ 237 (281)
+..++....+.. ++.. ..+.-..||++|+++
T Consensus 187 ~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~ 221 (229)
T PRK09270 187 LSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMT 221 (229)
T ss_pred CCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEec
Confidence 554333333332 1111 112222599999974
No 136
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.72 E-value=2.4e-07 Score=81.10 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC---CceecCchHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLV 128 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~---~~~~d~D~li 128 (281)
+|..|.|+|++||||||+++.|+..++ +.++..|.++
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 578899999999999999999998875 4566776653
No 137
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.72 E-value=1.2e-07 Score=82.25 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=40.5
Q ss_pred cEEEEEcC-HHHHHhh-hcCCCC-CcChHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 188 ISLWIDVP-PGMVARM-DHSGFP-ESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 188 ~vV~L~~s-~e~l~~R-~~R~r~-~~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
++||+.+| .+.+.+| .+|+.. .++....+.++..+.. ....+|++|.+ + +.++...++.+.+
T Consensus 118 ~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~-~~~~~D~vI~N-------------~-dle~a~~ql~~ii 182 (186)
T PRK14737 118 VTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELD-EANEFDYKIIN-------------D-DLEDAIADLEAII 182 (186)
T ss_pred EEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-hhccCCEEEEC-------------c-CHHHHHHHHHHHH
Confidence 68999985 6888888 666653 3344455555443322 12358999985 2 7788877776655
Q ss_pred H
Q 023493 265 E 265 (281)
Q Consensus 265 ~ 265 (281)
.
T Consensus 183 ~ 183 (186)
T PRK14737 183 C 183 (186)
T ss_pred h
Confidence 4
No 138
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.71 E-value=1.4e-07 Score=81.81 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=22.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhC
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.|.|.|++||||||+|+.|+..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999997
No 139
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.69 E-value=7.8e-08 Score=82.65 Aligned_cols=134 Identities=23% Similarity=0.351 Sum_probs=70.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChH-HHHHhhh--------------------------hh
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRESD--------------------------EK 147 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~-eif~~~g--------------------------e~ 147 (281)
.|.|.+..|||++++|+.||+.||++++|- +++.+......+. +.+...+ ..
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 478999999999999999999999999997 5665533211110 0111111 11
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEeCCceeechhhHHhcc---CCcEEEEEcCHHHHHhh-h-cCCCCCcChHHHHHHHHHH
Q 023493 148 GYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-D-HSGFPESEVLPQLFALYKE 222 (281)
Q Consensus 148 ~fr~~e~~vl~~l~~~~~~VIa~G~g~v~~~~~~~~L~---~~~vV~L~~s~e~l~~R-~-~R~r~~~~~~~~l~~~~~~ 222 (281)
.+.....+++..++..+++||. |-+ .++ .|+ +.+.|||.+|.+.+.+| . ..+.+.+++...+...-..
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~-GR~-----a~~-il~~~~~~l~V~i~A~~~~Rv~ri~~~~~~s~~~A~~~i~~~D~~ 152 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIV-GRC-----ANY-ILRDIPNVLHVFIYAPLEFRVERIMEREGISEEEAEKLIKKEDKR 152 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEE-STT-----HHH-HTTT-TTEEEEEEEE-HHHHHHHHHHHHT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEE-ecC-----Hhh-hhCCCCCeEEEEEECCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1223344567777766677764 321 222 343 35889999999999999 3 3355544444444444333
Q ss_pred hhcccc-----------CCcEEEEc
Q 023493 223 MRDGYA-----------TADVTVSL 236 (281)
Q Consensus 223 r~~~y~-----------~ad~~Id~ 236 (281)
|..+|. ..|++||+
T Consensus 153 R~~~~~~~~~~~~~d~~~YDLvint 177 (179)
T PF13189_consen 153 RRAYYKYYTGIDWGDPSNYDLVINT 177 (179)
T ss_dssp HHHHHHHH-SS-TTBGGG-SEEEEE
T ss_pred HHHHHHHHhCCCCCCchhceEEEeC
Confidence 332221 36789885
No 140
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.66 E-value=4e-07 Score=83.41 Aligned_cols=135 Identities=17% Similarity=0.183 Sum_probs=62.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEE
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VI 168 (281)
.+|+|+|.|||||||+|+.|++.+. +.+++.|.+. .. ... +.....|...|..-...+.+......+||
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~-~~~--y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI 75 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---ID-RND--YADSKKEKEARGSLKSAVERALSKDTIVI 75 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----T-TSS--S--GGGHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cc-hhh--hhchhhhHHHHHHHHHHHHHhhccCeEEE
Confidence 4799999999999999999998652 3456655544 11 111 11222333333322222333444456777
Q ss_pred EeCCceeechhhHHhc---c----CCcEEEEEcCHHHHHhh-hcCCCC---CcChHHHHHHHHHHhhccc--cCCcEEEE
Q 023493 169 CAGNGAVQSSANLALL---R----HGISLWIDVPPGMVARM-DHSGFP---ESEVLPQLFALYKEMRDGY--ATADVTVS 235 (281)
Q Consensus 169 a~G~g~v~~~~~~~~L---~----~~~vV~L~~s~e~l~~R-~~R~r~---~~~~~~~l~~~~~~r~~~y--~~ad~~Id 235 (281)
..+....- .-..++. + ...+||+++|.|.+.+| ..|+.+ .++....+...|+.-.+.. +..-++|+
T Consensus 76 ~Dd~nYiK-g~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~ 154 (270)
T PF08433_consen 76 LDDNNYIK-GMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRWDSPLFTID 154 (270)
T ss_dssp E-S---SH-HHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GGGS-SEEEE
T ss_pred EeCCchHH-HHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCccCCeEEEe
Confidence 65432221 1111111 2 23789999999999999 666543 2233333333333322211 12457777
No 141
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.66 E-value=2.1e-07 Score=82.32 Aligned_cols=37 Identities=19% Similarity=0.083 Sum_probs=31.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc---eecCchHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYY---YFDSDSLVF 129 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~---~~d~D~li~ 129 (281)
...|.|.|.+||||||+++.|++.++.. .++.|+++.
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk 47 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYK 47 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccccc
Confidence 4688999999999999999999999955 667777764
No 142
>PRK12338 hypothetical protein; Provisional
Probab=98.65 E-value=1e-06 Score=82.33 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=33.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcee-cCchHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEAA 132 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~-d~D~li~~~~ 132 (281)
++..|+|.|+|||||||+|+.||+++|+.++ ++|.+.+.+.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~ 44 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVR 44 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHc
Confidence 4578999999999999999999999999988 5555444333
No 143
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.63 E-value=1.9e-07 Score=74.06 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHhC
Q 023493 96 VFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 96 i~l~G~~GsGKstvak~La~~l~ 118 (281)
|+|.|+|||||||+|+.|++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~ 23 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG 23 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999983
No 144
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.63 E-value=2.9e-07 Score=80.79 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=24.5
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
...++..|+|+|++||||||+++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4457899999999999999999999864
No 145
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.60 E-value=8.2e-07 Score=76.05 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=36.5
Q ss_pred cCCcEEEEEcCHHHHHhh-hcCCC-C--CcChHHHHHHHHHHhhcccc-CCc-EEEEcCccccccccCCCCCCCHHHHHH
Q 023493 185 RHGISLWIDVPPGMVARM-DHSGF-P--ESEVLPQLFALYKEMRDGYA-TAD-VTVSLQKVASQLGYDDLDAVTTEDMTL 258 (281)
Q Consensus 185 ~~~~vV~L~~s~e~l~~R-~~R~r-~--~~~~~~~l~~~~~~r~~~y~-~ad-~~Id~~~~a~~l~~~dts~~speeva~ 258 (281)
+++++|||++|+++..+| ..|+. . ..+....+.+..+.+....+ ... .+||. +.++|++.+
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~iid~-------------~~~~e~v~~ 184 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREAYLELAKDPNNWVIIDA-------------SRSIEEVHE 184 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHHHHHHHHTTTTEEEEET-------------TS-HHHHHH
T ss_pred CCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC-------------CCCHHHHHh
Confidence 579999999999999999 55544 2 11222233332222222221 233 56774 578999988
Q ss_pred HH
Q 023493 259 EV 260 (281)
Q Consensus 259 ~I 260 (281)
+|
T Consensus 185 ~I 186 (186)
T PF02223_consen 185 QI 186 (186)
T ss_dssp HH
T ss_pred hC
Confidence 76
No 146
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.57 E-value=7.3e-07 Score=76.68 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=40.6
Q ss_pred CcEEEEE-cCHHHHHhh-hcCCCCC-cChHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHH
Q 023493 187 GISLWID-VPPGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKE 263 (281)
Q Consensus 187 ~~vV~L~-~s~e~l~~R-~~R~r~~-~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~ 263 (281)
.++|||. .+.+.+.+| .+|+... ++....+.....+. ..|...|.+|.+ .+.++...++.+.
T Consensus 115 ~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~-~~~~~fd~~I~n--------------~~l~~~~~~l~~~ 179 (184)
T smart00072 115 PIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEA-QEYHLFDYVIVN--------------DDLEDAYEELKEI 179 (184)
T ss_pred cEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-hhhccCCEEEEC--------------cCHHHHHHHHHHH
Confidence 4899998 566678888 6676543 22333443322221 123457899885 3788888888877
Q ss_pred HHH
Q 023493 264 IEK 266 (281)
Q Consensus 264 i~~ 266 (281)
+.+
T Consensus 180 i~~ 182 (184)
T smart00072 180 LEA 182 (184)
T ss_pred HHh
Confidence 764
No 147
>PRK15453 phosphoribulokinase; Provisional
Probab=98.55 E-value=6.5e-07 Score=82.25 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=32.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~li~ 129 (281)
++.+|.|+|.|||||||+++.|++.++ ..+++.|++.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 568899999999999999999998774 45788888764
No 148
>PRK07667 uridine kinase; Provisional
Probab=98.54 E-value=8e-07 Score=77.17 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFE 130 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~li~~ 130 (281)
....|.|.|++||||||+++.|++.++ ...++.|++...
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 346889999999999999999999873 447888886543
No 149
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.53 E-value=2.6e-07 Score=79.23 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=24.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
+++.|+|+||+||||||+++.|.+.++
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 478899999999999999999998875
No 150
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.52 E-value=1.1e-06 Score=75.80 Aligned_cols=28 Identities=29% Similarity=0.282 Sum_probs=25.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
+|+.++|.||+|+||||+.+.|-+..++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l 30 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKL 30 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCe
Confidence 6899999999999999999999887754
No 151
>PLN02348 phosphoribulokinase
Probab=98.49 E-value=4.6e-07 Score=86.66 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=24.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
+...|.|.|++||||||+++.|++.||
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457888999999999999999999996
No 152
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.47 E-value=5.3e-06 Score=70.24 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=88.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCc----eecCchHHHH--HhCC-----CChHHHHHhhhhhhHH----------
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----YFDSDSLVFE--AAGG-----ESAAKAFRESDEKGYQ---------- 150 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~----~~d~D~li~~--~~g~-----~~i~eif~~~ge~~fr---------- 150 (281)
.|..|+++||+|+||-|+-......+.-. |+. .+|-. ..|+ .+-.++....++..|.
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvr--RvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Y 81 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVR--RVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSY 81 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEE--EEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccc
Confidence 58999999999999999999888877532 221 11110 0010 2223333333322221
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhcccc-
Q 023493 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA- 228 (281)
Q Consensus 151 ~~e~~vl~~l~~~~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~y~- 228 (281)
-+..++-..+ ..+..||+.|.-.++ +..+.....-.+|.|.++++++++| ..|||... +++.+-+ .|...|.
T Consensus 82 gip~eId~wl-~~G~vvl~NgSRa~L-p~arrry~~Llvv~ita~p~VLaqRL~~RGREs~---eeI~aRL-~R~a~~~~ 155 (192)
T COG3709 82 GIPAEIDLWL-AAGDVVLVNGSRAVL-PQARRRYPQLLVVCITASPEVLAQRLAERGRESR---EEILARL-ARAARYTA 155 (192)
T ss_pred cCchhHHHHH-hCCCEEEEeccHhhh-HHHHHhhhcceeEEEecCHHHHHHHHHHhccCCH---HHHHHHH-Hhhccccc
Confidence 0111112222 335566666643333 2222223345789999999999999 88998742 2333222 2334444
Q ss_pred -CCc-EEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 229 -TAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 229 -~ad-~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
..| .+||+ +...++..+..+..+.+..
T Consensus 156 ~~~dv~~idN-------------sG~l~~ag~~ll~~l~~~~ 184 (192)
T COG3709 156 GPGDVTTIDN-------------SGELEDAGERLLALLHQDS 184 (192)
T ss_pred CCCCeEEEcC-------------CCcHHHHHHHHHHHHHhhc
Confidence 345 46776 4788888888888777544
No 153
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.46 E-value=6.9e-07 Score=81.96 Aligned_cols=34 Identities=12% Similarity=0.003 Sum_probs=28.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhC---CceecCchHH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLV 128 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~---~~~~d~D~li 128 (281)
.|.|+|++||||||+++.|+..++ ...++.|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 378999999999999999998774 5567777664
No 154
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.43 E-value=1.4e-06 Score=86.62 Aligned_cols=95 Identities=22% Similarity=0.231 Sum_probs=62.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEe
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~ 170 (281)
-...+|+++|.|||||||+|+.+++.+|+.+++.|.+ | . +......+...+.....+||+.
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l-----g-~-------------~~~~~~~a~~~L~~G~sVVIDa 427 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL-----G-S-------------TQNCLTACERALDQGKRCAIDN 427 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH-----H-H-------------HHHHHHHHHHHHhCCCcEEEEC
Confidence 3568899999999999999999999999999999875 2 0 0111112233344444566653
Q ss_pred CCceeechhhHH---hc-c-CC---cEEEEEcCHHHHHhh-hcCCC
Q 023493 171 GNGAVQSSANLA---LL-R-HG---ISLWIDVPPGMVARM-DHSGF 207 (281)
Q Consensus 171 G~g~v~~~~~~~---~L-~-~~---~vV~L~~s~e~l~~R-~~R~r 207 (281)
.. .....+. .+ + .+ ..||+++|.+++.+| ..|.+
T Consensus 428 Tn---~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 428 TN---PDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred CC---CCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 22 2222221 12 2 33 579999999999999 55544
No 155
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.42 E-value=7.8e-07 Score=77.27 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=31.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh-CCceecCchHHH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVF 129 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l-~~~~~d~D~li~ 129 (281)
.|.|.|.+||||||+|+.|++.+ ++.+++.|+++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 47899999999999999999998 688999998864
No 156
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.39 E-value=2.1e-07 Score=96.60 Aligned_cols=77 Identities=22% Similarity=0.186 Sum_probs=63.8
Q ss_pred hhccCCccccccccccccCccccccc-----------CCCcch----HHHHHHHHHhc------ccCCcEEEEEccCCCC
Q 023493 47 IISRKPRITTRSIADDTTSNTVTKVA-----------AEDPSF----AVKKKAADIST------ELKGTSVFLVGMNNAI 105 (281)
Q Consensus 47 ~~~r~~~~~~~~~~~~~~~~~~~~~~-----------~~d~~~----~~~~~~~e~~~------~~~~~~i~l~G~~GsG 105 (281)
...++++.++|+|.+|-++.||+... .+|.++ .+|+++.|... ..+|..++|+||||+|
T Consensus 282 ~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~G 361 (784)
T PRK10787 282 SPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVG 361 (784)
T ss_pred CCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCC
Confidence 34678999999999999999997766 556642 88888776443 2578899999999999
Q ss_pred HHHHHHHHHHHhCCceec
Q 023493 106 KTHLGKFLADALRYYYFD 123 (281)
Q Consensus 106 Kstvak~La~~l~~~~~d 123 (281)
|||+++.+|+.++.+++.
T Consensus 362 KTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 362 KTSLGQSIAKATGRKYVR 379 (784)
T ss_pred HHHHHHHHHHHhCCCEEE
Confidence 999999999999988853
No 157
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.38 E-value=2.3e-06 Score=78.15 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=29.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhC-----CceecCchHHH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~li~ 129 (281)
.|.|+|.+||||||+++.|++.++ +.+++.|++.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 478999999999999999998774 45788888875
No 158
>PRK07429 phosphoribulokinase; Provisional
Probab=98.35 E-value=4.9e-06 Score=78.29 Aligned_cols=37 Identities=22% Similarity=0.094 Sum_probs=31.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC---CceecCchHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLV 128 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~---~~~~d~D~li 128 (281)
+...|.|+|++||||||+++.|++.++ ...++.|++.
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 456899999999999999999999987 4567777764
No 159
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.33 E-value=2.5e-05 Score=72.56 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=35.9
Q ss_pred HHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCc-eecCchHHH
Q 023493 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVF 129 (281)
Q Consensus 86 e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~~-~~d~D~li~ 129 (281)
.+...-.+..|+|.|++||||||+|..||++||+. .+.+|.+.+
T Consensus 85 ~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re 129 (301)
T PRK04220 85 RIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIRE 129 (301)
T ss_pred HHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH
Confidence 34443356889999999999999999999999997 578887763
No 160
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.27 E-value=1.5e-06 Score=74.70 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=30.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh-----CCceecCchHHH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVF 129 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l-----~~~~~d~D~li~ 129 (281)
.|.|.|.+||||||+++.|++.+ +...++.|++..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 47899999999999999999986 356788888875
No 161
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.27 E-value=3.5e-05 Score=75.32 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=35.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCc-eecCchHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVFEAA 132 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~-~~d~D~li~~~~ 132 (281)
++..|+++|++|+||||++..||+++|+. ++.+|.+.+.+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr 295 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLR 295 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHH
Confidence 57889999999999999999999999998 668888765443
No 162
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.21 E-value=7.5e-06 Score=72.74 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=27.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhC-------CceecCchHH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~-------~~~~d~D~li 128 (281)
.|.|.|++||||||+++.|+..+. +..+..|++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 378999999999999999998873 3456667654
No 163
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.20 E-value=2.6e-06 Score=82.19 Aligned_cols=60 Identities=13% Similarity=0.253 Sum_probs=45.4
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCch--HHH-HHhCCCChHHHHHhhhhhhHH
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS--LVF-EAAGGESAAKAFRESDEKGYQ 150 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~--li~-~~~g~~~i~eif~~~ge~~fr 150 (281)
+..+..|+|+||||||||++|+.||+.++.+|++.|. +.+ ...| .....+++..++..|+
T Consensus 44 e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG-~dvE~i~r~l~e~A~~ 106 (441)
T TIGR00390 44 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG-RDVESMVRDLTDAAVK 106 (441)
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc-CCHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999998884 332 2344 5666666665555544
No 164
>PHA00729 NTP-binding motif containing protein
Probab=98.19 E-value=1e-05 Score=72.21 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=31.3
Q ss_pred HHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 80 ~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
.|+.+.++.+. .-.+|+|+|+||+||||+|..|+++++.
T Consensus 5 ~k~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 5 AKKIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred HHHHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34447777665 3358999999999999999999998863
No 165
>PHA03132 thymidine kinase; Provisional
Probab=98.16 E-value=8.4e-06 Score=81.62 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=26.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~ 120 (281)
+++.|+|.|..|+||||+++.|++.+|..
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~ 284 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDN 284 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 38899999999999999999999998543
No 166
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.16 E-value=2.2e-06 Score=73.73 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=34.9
Q ss_pred CccccccccccccCcccccccCCCcch--HHHHH-HHHHhcc---cCCcEEEEEccCCCCHHHHHHHHHHHh-----CCc
Q 023493 52 PRITTRSIADDTTSNTVTKVAAEDPSF--AVKKK-AADISTE---LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYY 120 (281)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~e~~~~---~~~~~i~l~G~~GsGKstvak~La~~l-----~~~ 120 (281)
+|++.+.++.+.++ +..++..+|+.. ..++. +.++..+ -++.+++|.|++|+|||++|..++..+ .+.
T Consensus 1 ~r~~~~~l~~a~lp-~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~ 79 (178)
T PF01695_consen 1 QRRIERRLKQAGLP-PDATLENFDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVL 79 (178)
T ss_dssp ----------------------------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CCcccccccccccc-cccccccccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCccee
Confidence 36678889999987 467888888875 33323 5555433 468899999999999999999998543 356
Q ss_pred eecCchHHHHHh
Q 023493 121 YFDSDSLVFEAA 132 (281)
Q Consensus 121 ~~d~D~li~~~~ 132 (281)
|++..+++.+..
T Consensus 80 f~~~~~L~~~l~ 91 (178)
T PF01695_consen 80 FITASDLLDELK 91 (178)
T ss_dssp EEEHHHHHHHHH
T ss_pred EeecCceecccc
Confidence 778878776654
No 167
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.16 E-value=1.5e-05 Score=79.83 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=38.3
Q ss_pred CCCcch-HHHHHHHHHhccc-CCcEEEEEccCCCCHHHHHHHHHHHhC-CceecCchH
Q 023493 73 AEDPSF-AVKKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSL 127 (281)
Q Consensus 73 ~~d~~~-~~~~~~~e~~~~~-~~~~i~l~G~~GsGKstvak~La~~l~-~~~~d~D~l 127 (281)
+||..| -.=+.++.+.... ....|.|.|++||||||+++.|+..++ ...+..|++
T Consensus 43 sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 43 SFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred ccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 567776 3333455555432 347888999999999999999998874 345666665
No 168
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.12 E-value=7.2e-06 Score=75.89 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=28.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-------CceecCchHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~-------~~~~d~D~li 128 (281)
++..|.|.|++||||||+++.|+..+. +..+..|.+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 457888999999999999999987663 3345666543
No 169
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=98.09 E-value=7.9e-05 Score=63.01 Aligned_cols=167 Identities=15% Similarity=0.095 Sum_probs=89.5
Q ss_pred HHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCce--ecCchHHHHHhC-------CCChHHHHHhhhhhhH-
Q 023493 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVFEAAG-------GESAAKAFRESDEKGY- 149 (281)
Q Consensus 80 ~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~--~d~D~li~~~~g-------~~~i~eif~~~ge~~f- 149 (281)
+..++.+-+++.+|++|+|-|.+.+|||++|.++.+-..-+| +-.|.+.+..-. +.+...-...+|.+.+
T Consensus 10 ~~~~~~~~ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~ 89 (205)
T COG3896 10 MRYRLAAMAGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVT 89 (205)
T ss_pred HHHHHHHHcCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeE
Confidence 445678888999999999999999999999999988766555 445665543211 0000000111222211
Q ss_pred ------HH----HHHHHHHHHhcCCCeEEEeCCceeechh----hHHhcc-C-CcEEEEEcCHHHHHhh-hcC-CCCCcC
Q 023493 150 ------QQ----AETEVLKQLSSMGRLVVCAGNGAVQSSA----NLALLR-H-GISLWIDVPPGMVARM-DHS-GFPESE 211 (281)
Q Consensus 150 ------r~----~e~~vl~~l~~~~~~VIa~G~g~v~~~~----~~~~L~-~-~~vV~L~~s~e~l~~R-~~R-~r~~~~ 211 (281)
-+ --...+...+..+..||... +..... -...|. . -..|=+.||.|+..+| ..| +|...-
T Consensus 90 v~~gpi~e~~~~~~r~ai~a~ad~G~~~i~Dd--v~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~dR~pG~ 167 (205)
T COG3896 90 VHPGPILELAMHSRRRAIRAYADNGMNVIADD--VIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRGDRHPGW 167 (205)
T ss_pred eechhHHHHHHHHHHHHHHHHhccCcceeehh--cccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcCCcCcch
Confidence 00 01123444444444455421 111111 112222 2 2457789999999999 333 232211
Q ss_pred hHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHH
Q 023493 212 VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 212 ~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~ 265 (281)
. +-.+++ ...-...|+.+| |+..+|.|++.+|-+.++
T Consensus 168 ~----rg~~r~-vHa~~~YDlevD------------TS~~tp~EcAr~i~~r~q 204 (205)
T COG3896 168 N----RGSARA-VHADAEYDLEVD------------TSATTPHECAREIHERYQ 204 (205)
T ss_pred h----hhhHHH-hcCCcceeeeec------------ccCCCHHHHHHHHHHHhc
Confidence 1 111111 110012455554 789999999999987654
No 170
>PRK05439 pantothenate kinase; Provisional
Probab=98.06 E-value=9.4e-06 Score=75.80 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=29.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-------CceecCchHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~-------~~~~d~D~li 128 (281)
+...|.|.|+|||||||+|+.|++.++ ...+..|+++
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 456789999999999999999998764 3456777765
No 171
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.04 E-value=3.6e-06 Score=87.62 Aligned_cols=77 Identities=29% Similarity=0.238 Sum_probs=58.5
Q ss_pred hhccCCccccccccccccCcccccccC-----------CCcch----HHHHHHHHHh------cccCCcEEEEEccCCCC
Q 023493 47 IISRKPRITTRSIADDTTSNTVTKVAA-----------EDPSF----AVKKKAADIS------TELKGTSVFLVGMNNAI 105 (281)
Q Consensus 47 ~~~r~~~~~~~~~~~~~~~~~~~~~~~-----------~d~~~----~~~~~~~e~~------~~~~~~~i~l~G~~GsG 105 (281)
...++++.+.|+|.++-++.||..... +|.+. .+|+++.+.. +..++..++|+||||+|
T Consensus 280 ~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~G 359 (775)
T TIGR00763 280 EPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVG 359 (775)
T ss_pred CCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCC
Confidence 346788999999999999999976552 23321 4555555532 23567889999999999
Q ss_pred HHHHHHHHHHHhCCceec
Q 023493 106 KTHLGKFLADALRYYYFD 123 (281)
Q Consensus 106 Kstvak~La~~l~~~~~d 123 (281)
||++|+.||+.++.+++.
T Consensus 360 KT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 360 KTSLGKSIAKALNRKFVR 377 (775)
T ss_pred HHHHHHHHHHHhcCCeEE
Confidence 999999999999988864
No 172
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.0002 Score=64.75 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=35.4
Q ss_pred HhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCce-ecCchHHHH
Q 023493 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVFE 130 (281)
Q Consensus 87 ~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~-~d~D~li~~ 130 (281)
+.++..+..|+|-|.||+||||+|-.||.+||+.. +.+|.+.+-
T Consensus 83 ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREv 127 (299)
T COG2074 83 IRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREV 127 (299)
T ss_pred HhccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHH
Confidence 44666777888888999999999999999999876 567766543
No 173
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.00 E-value=5.6e-06 Score=65.81 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=26.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 96 VFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 96 i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
|+|.|+||+|||++++.+|+.++++++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 68999999999999999999999877543
No 174
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.99 E-value=3e-05 Score=67.45 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=30.4
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh---CCceecCchHH
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLV 128 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l---~~~~~d~D~li 128 (281)
+.-++..+++.|+|||||||++..+.+.+ ++..+|.|.+.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 34567889999999999999999999987 68889999875
No 175
>COG4639 Predicted kinase [General function prediction only]
Probab=97.96 E-value=7.5e-05 Score=62.85 Aligned_cols=107 Identities=18% Similarity=0.127 Sum_probs=59.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChH-HHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~-eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~ 172 (281)
..++|+|.|||||||+++.. -+....++.|++.... | .... +......+..+.......-+.+....-.|+..-
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~l-g-~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAt- 77 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLL-G-VSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDAT- 77 (168)
T ss_pred eEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHh-h-hchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEcc-
Confidence 57899999999999999863 3567788888876543 2 1111 111111122333333222223332223455421
Q ss_pred ceeechhhHH-hcc----C---CcEEEEEcCHHHHHhh-hcCCC
Q 023493 173 GAVQSSANLA-LLR----H---GISLWIDVPPGMVARM-DHSGF 207 (281)
Q Consensus 173 g~v~~~~~~~-~L~----~---~~vV~L~~s~e~l~~R-~~R~r 207 (281)
-..++++. ++. . ...||++.|++.|..| ..|.|
T Consensus 78 --n~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R 119 (168)
T COG4639 78 --NLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER 119 (168)
T ss_pred --cCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch
Confidence 12334443 221 2 3679999999999999 44433
No 176
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=97.89 E-value=1.3e-05 Score=75.38 Aligned_cols=161 Identities=16% Similarity=0.231 Sum_probs=86.3
Q ss_pred hcccCCcEEEEEccCCCCHHHHHHHHHHHh---CCcee--cCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhc
Q 023493 88 STELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF--DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSS 162 (281)
Q Consensus 88 ~~~~~~~~i~l~G~~GsGKstvak~La~~l---~~~~~--d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~ 162 (281)
+..++|-.|+++|.+|+||||+.-+|.+.| |++++ |.|++..-+.. .+ .+-.++.+++.|++.. +.++..
T Consensus 45 ~~gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~k--nl-gfs~edreenirriae--vaklfa 119 (627)
T KOG4238|consen 45 RGGFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNK--NL-GFSPEDREENIRRIAE--VAKLFA 119 (627)
T ss_pred cCCccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhh--cc-CCCchhHHHHHHHHHH--HHHHHh
Confidence 355889999999999999999999998654 66664 67776543322 11 0112334555655422 344544
Q ss_pred CCCeEEEeCCceee--chhhHHhcc-----CCcEEEEEcCHHHHHhhhcCCCCCcChHHHHHHHHHHhhcccc---CCcE
Q 023493 163 MGRLVVCAGNGAVQ--SSANLALLR-----HGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA---TADV 232 (281)
Q Consensus 163 ~~~~VIa~G~g~v~--~~~~~~~L~-----~~~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~~~r~~~y~---~ad~ 232 (281)
..+.|..+.--.+. +..+...+. .-+-||++++.+++.+|+-++........++.. |.--+..|+ .+.+
T Consensus 120 daglvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~g-ftgids~ye~pe~~e~ 198 (627)
T KOG4238|consen 120 DAGLVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKG-FTGIDSDYEKPETPER 198 (627)
T ss_pred cCCceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhcccccc-ccccccccCCCCChhH
Confidence 44544433211111 112222222 236799999999999993222111000001110 011112233 3556
Q ss_pred EEEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 233 ~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
++++ +.-+..+++.++++.+++
T Consensus 199 vl~t------------~~~~v~~cvqqvve~lq~ 220 (627)
T KOG4238|consen 199 VLKT------------NLSTVSDCVQQVVELLQE 220 (627)
T ss_pred Hhhc------------CCchHHHHHHHHHHHHHh
Confidence 6664 345677888777776653
No 177
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.88 E-value=7.2e-05 Score=64.62 Aligned_cols=161 Identities=16% Similarity=0.193 Sum_probs=83.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC--chHHHH--HhCCCChHH---------------HHHhhhhhhHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFE--AAGGESAAK---------------AFRESDEKGYQQ 151 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~--D~li~~--~~g~~~i~e---------------if~~~ge~~fr~ 151 (281)
.+|..|++.|..+|||||.+..|.+.+.-....+ +.+-++ ..| ..+.. +|....++..
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~~~~l~~FP~Rst~iG-k~i~~YL~k~~dl~d~~iHLlFSAnRwe~~-- 79 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLIPGLDPAELLRFPERSTSIG-KLIDGYLRKKSDLPDHTIHLLFSANRWEHV-- 79 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHHhccChHHhhhcchhccccc-HHHHHHHHhccCCcHHHHHHHhccchhhHH--
Confidence 4689999999999999999999988773221110 111010 111 11222 2222211111
Q ss_pred HHHHHHHHHhcCCCeEEEe--CCceeec-----------hhhHHhccCCcEEEEEcCHHHHHhhhcCCCCC-cC--hHHH
Q 023493 152 AETEVLKQLSSMGRLVVCA--GNGAVQS-----------SANLALLRHGISLWIDVPPGMVARMDHSGFPE-SE--VLPQ 215 (281)
Q Consensus 152 ~e~~vl~~l~~~~~~VIa~--G~g~v~~-----------~~~~~~L~~~~vV~L~~s~e~l~~R~~R~r~~-~~--~~~~ 215 (281)
..+.+++.....+|++- -.|+... .....++++|.++||++|++.+++|...|... +. ..+.
T Consensus 80 --~~i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~Erye~v~fqek 157 (208)
T KOG3327|consen 80 --SLIKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEERYETVAFQEK 157 (208)
T ss_pred --HHHHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchhHHHHHHHHHH
Confidence 12334444333334331 1122111 01123456899999999999988886555331 11 1122
Q ss_pred HHHHHHHhhccccCCc-EEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhh
Q 023493 216 LFALYKEMRDGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRK 270 (281)
Q Consensus 216 l~~~~~~r~~~y~~ad-~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~ 270 (281)
....|.+... .+... .++|. ..+.|++.+.|...+++.+..
T Consensus 158 v~~~~q~l~r-~e~~~~~~vDA-------------s~sve~V~~~V~~i~e~~~~~ 199 (208)
T KOG3327|consen 158 VLVFFQKLLR-KEDLNWHVVDA-------------SKSVEKVHQQVRSLVENVLSE 199 (208)
T ss_pred HHHHHHHHHh-ccCCCeEEEec-------------CccHHHHHHHHHHHHHHhccC
Confidence 2222222210 12233 46664 478999999998888877654
No 178
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.85 E-value=6e-05 Score=70.36 Aligned_cols=36 Identities=31% Similarity=0.279 Sum_probs=33.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
+++.|+|+||+|||||++|..||+.++..+++.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 457899999999999999999999999999999884
No 179
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.83 E-value=4.7e-05 Score=73.72 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=40.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH-HHH--HhCCCChHHHHHhhhhhh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL-VFE--AAGGESAAKAFRESDEKG 148 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l-i~~--~~g~~~i~eif~~~ge~~ 148 (281)
..+..|+|+|+||+|||++|+.||+.++.+|+..|.. +.+ +.| .+...+++...+..
T Consensus 48 ~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG-~d~e~~ir~L~~~A 107 (443)
T PRK05201 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG-RDVESIIRDLVEIA 107 (443)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc-CCHHHHHHHHHHHH
Confidence 3468999999999999999999999999999887642 322 333 45444444443333
No 180
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.81 E-value=0.0001 Score=65.74 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=38.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC-----ceecCchHHHHHhCCCChHHHHHhhhhh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLVFEAAGGESAAKAFRESDEK 147 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~-----~~~d~D~li~~~~g~~~i~eif~~~ge~ 147 (281)
...+|+++|.|+.|||++|+.|+.-|.| ..++.+++.++..+...-.++|....++
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~ 71 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEE 71 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChH
Confidence 4567899999999999999999976654 4678888888887732223445443333
No 181
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.77 E-value=2.3e-05 Score=56.81 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 023493 95 SVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l 117 (281)
.|+|+|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999985
No 182
>PLN02772 guanylate kinase
Probab=97.77 E-value=0.00038 Score=66.87 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
..+.|+|+||+|+||+||.+.|.+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 46789999999999999999998765
No 183
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.71 E-value=3.6e-05 Score=70.25 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=24.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
-....|.+.|++|+||||+++.|+..+.
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~ 107 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLS 107 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHh
Confidence 3467899999999999999999997764
No 184
>PLN02840 tRNA dimethylallyltransferase
Probab=97.71 E-value=7.5e-05 Score=72.34 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=33.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
.+++.|+|+|++||||||++..||+.++..+++.|.+
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 4567899999999999999999999999999988874
No 185
>PHA02244 ATPase-like protein
Probab=97.69 E-value=6.9e-05 Score=71.46 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=44.9
Q ss_pred ccccccCCCcch--------HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 67 TVTKVAAEDPSF--------AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 67 ~~~~~~~~d~~~--------~~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
+++.++.+|+.+ .+..++..+.. .+..|+|.|++|||||++++.+|..++++|+..+.+
T Consensus 87 ~~~~l~~~d~~~ig~sp~~~~~~~ri~r~l~--~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 87 PAGDISGIDTTKIASNPTFHYETADIAKIVN--ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred CcCchhhCCCcccCCCHHHHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 477888999875 22223433333 567899999999999999999999999999866543
No 186
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.68 E-value=7.8e-05 Score=61.34 Aligned_cols=41 Identities=32% Similarity=0.214 Sum_probs=34.0
Q ss_pred HHHHHHHHhccc-CCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 023493 80 VKKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (281)
Q Consensus 80 ~~~~~~e~~~~~-~~~~i~l~G~~GsGKstvak~La~~l~~~ 120 (281)
.++-+..++..+ ++..|+|.|++|+||||++|.+++.+|+.
T Consensus 8 t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 8 MDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344467777765 57899999999999999999999999974
No 187
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00032 Score=70.55 Aligned_cols=53 Identities=28% Similarity=0.331 Sum_probs=40.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceec--CchHHHHHhCCCC---hHHHHHhh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAGGES---AAKAFRES 144 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d--~D~li~~~~g~~~---i~eif~~~ 144 (281)
-+++-|++.||||||||++||.||..-+..|+. .-.++..+.| .+ +.++|+..
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vG-eSEr~ir~iF~kA 523 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVG-ESERAIREVFRKA 523 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcC-chHHHHHHHHHHH
Confidence 457889999999999999999999988888865 4567777766 33 45556543
No 188
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00038 Score=64.98 Aligned_cols=130 Identities=23% Similarity=0.314 Sum_probs=74.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHH--------------HHHhCCCC--hHHHHH---hhhhhhHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV--------------FEAAGGES--AAKAFR---ESDEKGYQQA 152 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li--------------~~~~g~~~--i~eif~---~~ge~~fr~~ 152 (281)
+-+.|+|.|+.|||||-|+--||.+++...|++|.+- ++..| .+ +-..+. +.-...|++.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~g-VPHHLlg~l~~~~e~t~~~F~~~ 84 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKG-VPHHLLGHLHPEAEYTAGEFEDD 84 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCC-CChHHhCcCChHhhccHHHHHHH
Confidence 5679999999999999999999999999998888751 11011 10 000000 1112346666
Q ss_pred HHHHHHHHhcCCCeEEEeCCceeechhhH-------------------Hhcc-CCcEEEEEcCHHHHHhh-hcCC--CCC
Q 023493 153 ETEVLKQLSSMGRLVVCAGNGAVQSSANL-------------------ALLR-HGISLWIDVPPGMVARM-DHSG--FPE 209 (281)
Q Consensus 153 e~~vl~~l~~~~~~VIa~G~g~v~~~~~~-------------------~~L~-~~~vV~L~~s~e~l~~R-~~R~--r~~ 209 (281)
...+++.+.+.+..=|..||+-..-..-. .-++ ....+||+++..++.+| .+|- +-.
T Consensus 85 a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD~Ml~ 164 (348)
T KOG1384|consen 85 ASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVDDMLE 164 (348)
T ss_pred HHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHHHHHH
Confidence 66677777654443333444321100000 0112 24789999999999999 5441 111
Q ss_pred cChHHHHHHHHHH
Q 023493 210 SEVLPQLFALYKE 222 (281)
Q Consensus 210 ~~~~~~l~~~~~~ 222 (281)
.-..+++..+|.-
T Consensus 165 ~Gl~eE~~~f~~~ 177 (348)
T KOG1384|consen 165 SGLLEELRDFYDP 177 (348)
T ss_pred cchHHHHHHHhhh
Confidence 1233455555544
No 189
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00091 Score=62.10 Aligned_cols=66 Identities=26% Similarity=0.289 Sum_probs=45.5
Q ss_pred cccccCCCcch-HHHHH-HHHHh--cccCCc-----EEEEEccCCCCHHHHHHHHHHHhCCcee--cCchHHHHHhC
Q 023493 68 VTKVAAEDPSF-AVKKK-AADIS--TELKGT-----SVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (281)
Q Consensus 68 ~~~~~~~d~~~-~~~~~-~~e~~--~~~~~~-----~i~l~G~~GsGKstvak~La~~l~~~~~--d~D~li~~~~g 133 (281)
|..++.++..- +||+. +.-|- ..+.|+ -|+|.||||+|||.+||++|-.-+-.|+ ++.+++.+.+|
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 55566666654 56555 22221 334443 4899999999999999999988887775 45677777766
No 190
>PLN02748 tRNA dimethylallyltransferase
Probab=97.66 E-value=8e-05 Score=73.16 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=33.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
-++..|+|+|+.|||||+++..||+.++..++++|.+
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Dsm 56 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSM 56 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchh
Confidence 4577899999999999999999999999999999973
No 191
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00029 Score=70.46 Aligned_cols=112 Identities=21% Similarity=0.285 Sum_probs=68.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC--chHHHHHhCC--CChHHHHHhh-------------------hhh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAGG--ESAAKAFRES-------------------DEK 147 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~--D~li~~~~g~--~~i~eif~~~-------------------ge~ 147 (281)
.+++-|+|-||||||||.+|+++|..+|++|+.. -.++-.+.|. ..++++|.+. .+.
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~ 300 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE 300 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh
Confidence 5677799999999999999999999999999753 4454433331 1255666542 123
Q ss_pred hHHHHHHHHHHHHhc-CCCeEE--EeCCceee-----chhhH-Hhcc----CCcEEEEEcCHHHHHhh
Q 023493 148 GYQQAETEVLKQLSS-MGRLVV--CAGNGAVQ-----SSANL-ALLR----HGISLWIDVPPGMVARM 202 (281)
Q Consensus 148 ~fr~~e~~vl~~l~~-~~~~VI--a~G~g~v~-----~~~~~-~~L~----~~~vV~L~~s~e~l~~R 202 (281)
.-+++|.+++.++.. +.+... ..|.++++ +++.. ..|+ .+.-|.|.+|.++..++
T Consensus 301 aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~ 368 (802)
T KOG0733|consen 301 AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREE 368 (802)
T ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHH
Confidence 447788888888753 111000 00122211 12222 1233 46789999999987665
No 192
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.63 E-value=9.8e-05 Score=69.36 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=29.9
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
...+..|+|.|+|||||||+++.||+.+|++++
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 345778999999999999999999999999886
No 193
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.61 E-value=5.9e-05 Score=58.95 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~ 120 (281)
+..++|+|+|||||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999999888654
No 194
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.57 E-value=7.7e-05 Score=60.62 Aligned_cols=28 Identities=36% Similarity=0.294 Sum_probs=25.6
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
.|+|+|+||+|||++++.+|+.++.+++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 4789999999999999999999998774
No 195
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.57 E-value=0.00018 Score=66.57 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=30.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
.|+|+|++|||||+++..|++.++..+++.|++
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 379999999999999999999999999999884
No 196
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.56 E-value=0.0014 Score=63.35 Aligned_cols=33 Identities=18% Similarity=0.037 Sum_probs=28.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
.-..+|+|+|.+||||||+++.|++.+|..++.
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 345789999999999999999999999987653
No 197
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.55 E-value=0.00013 Score=66.29 Aligned_cols=42 Identities=24% Similarity=0.159 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 79 ~~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
.+.+++..... .+..|+|+|+||+|||++|+.||+.+|.+++
T Consensus 9 ~l~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 9 RVTSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred HHHHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 34444444333 5788999999999999999999999998876
No 198
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.50 E-value=9.7e-05 Score=65.92 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=25.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
-..++|.||||+||||+|..+|+.++..+.-
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~ 80 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKI 80 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEe
Confidence 3578999999999999999999999987753
No 199
>PRK06761 hypothetical protein; Provisional
Probab=97.49 E-value=0.0001 Score=68.03 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=26.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
++.|+|+|+|||||||+++.|++.+....++
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~ 33 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIE 33 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceE
Confidence 5789999999999999999999999864433
No 200
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.49 E-value=0.00025 Score=56.04 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=26.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---CCcee
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF 122 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~~~~~ 122 (281)
.+..++|+|++|+|||++++.++..+ +..++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~ 51 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFL 51 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeE
Confidence 57789999999999999999999987 54443
No 201
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.48 E-value=0.00015 Score=66.80 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=30.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C------CceecCchHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R------YYYFDSDSLVFEAAG 133 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~------~~~~d~D~li~~~~g 133 (281)
++..++|.|+|||||||+|+.+|+.+ | +.+++.++++....|
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g 107 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIG 107 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcc
Confidence 45589999999999999999888765 2 234455555544444
No 202
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.47 E-value=9e-05 Score=67.32 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=66.6
Q ss_pred CCCCCChhhhhhhhcccCcccccchhhhhccCCccccccccccccCcccccccCCCcch--HHHHH----HHHHh-cccC
Q 023493 20 KGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSF--AVKKK----AADIS-TELK 92 (281)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~----~~e~~-~~~~ 92 (281)
++.++.+.+...... +...|..+...+......++. ..+...+|+.. .+.++ +..+. ...+
T Consensus 37 ~~~~~~~~~~~~~~~-----------~~~~~~~r~~~~~~~~a~~p~-~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~ 104 (254)
T COG1484 37 KEWGYAEFLEYLLEE-----------EKLAREARKIERRLRSASFPA-KKTFEEFDFEFQPGIDKKALEDLASLVEFFER 104 (254)
T ss_pred hcccHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhcCCc-cCCcccccccCCcchhHHHHHHHHHHHHHhcc
Confidence 456666777777666 777777777777776666655 35666667664 33333 22222 2247
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFE 130 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~li~~ 130 (281)
+.+++|.|+||+|||+++.+++..+- +.|+.+-+++.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~ 147 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK 147 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 99999999999999999999987652 345555555544
No 203
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.44 E-value=0.00018 Score=71.63 Aligned_cols=31 Identities=26% Similarity=0.199 Sum_probs=27.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
+...++|+||+||||||..+.||+.+|+.+.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 3567899999999999999999999997654
No 204
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.43 E-value=0.00016 Score=65.50 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
....++|.|+|||||||+|+.+|+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999865
No 205
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=9.7e-05 Score=68.99 Aligned_cols=30 Identities=30% Similarity=0.186 Sum_probs=26.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
.+.|++.||||+|||+++|+||++|.++..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~ 206 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTN 206 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeec
Confidence 578999999999999999999999986543
No 206
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.38 E-value=0.00013 Score=61.17 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
.|+|+|.+|+||||+++.|++. |++++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 4899999999999999999998 99888
No 207
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.37 E-value=0.0002 Score=70.77 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=32.4
Q ss_pred HHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 86 e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
++.+.+++..++|+||+||||||..+.|++.+|+.++
T Consensus 103 ~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 103 EFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred HhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 3445688899999999999999999999999998765
No 208
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00098 Score=59.74 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=37.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~ 132 (281)
++...+|+|+||+||.|++..+++.++..++.+.+++++..
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~i 54 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEI 54 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHH
Confidence 57889999999999999999999999999999999887754
No 209
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.33 E-value=0.00021 Score=69.28 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=30.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCc
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D 125 (281)
....|+|+|+||||||++|+.||+.++++|+..|
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 4578999999999999999999999999887654
No 210
>PF13173 AAA_14: AAA domain
Probab=97.30 E-value=0.00031 Score=56.66 Aligned_cols=38 Identities=29% Similarity=0.218 Sum_probs=31.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC----CceecCchHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR----YYYFDSDSLVF 129 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~----~~~~d~D~li~ 129 (281)
+++.++|.|+.|+||||+++.+++.+. +.+++.|+...
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 367899999999999999999998876 77888776643
No 211
>CHL00181 cbbX CbbX; Provisional
Probab=97.28 E-value=0.00029 Score=65.09 Aligned_cols=42 Identities=29% Similarity=0.311 Sum_probs=30.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---CC------ceecCchHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY------YYFDSDSLVFEAAG 133 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~~------~~~d~D~li~~~~g 133 (281)
++..++|.|+|||||||+|+.+|+.+ |+ ..++.++++....|
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g 108 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIG 108 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhc
Confidence 46679999999999999999999865 22 33455555544444
No 212
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.00026 Score=60.05 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=24.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
..+.|+++|+||+||||+++.+++.|.-
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 3578999999999999999999987743
No 213
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.23 E-value=0.00086 Score=62.41 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=30.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
++.|+|+||.|||||.+|-.||++ +...+++|.+
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 468999999999999999999999 5589999986
No 214
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.19 E-value=0.00036 Score=69.14 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=30.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCc
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D 125 (281)
-.++-|+|.||||||||.+|+.+|..++.+++..|
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 34678999999999999999999999999987654
No 215
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.19 E-value=0.00048 Score=55.96 Aligned_cols=37 Identities=32% Similarity=0.266 Sum_probs=28.6
Q ss_pred HHHHhccc-CCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 023493 84 AADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (281)
Q Consensus 84 ~~e~~~~~-~~~~i~l~G~~GsGKstvak~La~~l~~~ 120 (281)
++.|+..+ ++..|+|.|..||||||++|.+++.+|..
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 45555443 47789999999999999999999999864
No 216
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.18 E-value=0.00037 Score=59.51 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=26.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC--ceecC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRY--YYFDS 124 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~--~~~d~ 124 (281)
++.|+|+|+|||||||+|..++..++. .|+.+
T Consensus 1 ~~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 367999999999999999999999874 44444
No 217
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.18 E-value=0.00035 Score=66.40 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=25.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
+.+.++|+|||||||||+++.|+..++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4688899999999999999999998864
No 218
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.17 E-value=0.0004 Score=67.37 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=28.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
+..|+|+||||+|||++|+.||+.++++|.-.
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 46899999999999999999999999888643
No 219
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.16 E-value=0.00039 Score=66.91 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=29.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
.++.|+|.|+||||||++|+.+|..++..|+..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEe
Confidence 467799999999999999999999999887643
No 220
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.15 E-value=0.0006 Score=59.71 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=32.0
Q ss_pred HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchH
Q 023493 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (281)
Q Consensus 84 ~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~l 127 (281)
...+...-.+..|+|+|++||||||+++.++..+. +.+++.+.+
T Consensus 29 l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 29 LRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 33433334577899999999999999999997653 446666554
No 221
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.13 E-value=0.00069 Score=67.07 Aligned_cols=32 Identities=31% Similarity=0.308 Sum_probs=28.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
++.++|.||||||||++++.+|..++++++..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 45799999999999999999999999888754
No 222
>PRK10646 ADP-binding protein; Provisional
Probab=97.13 E-value=0.00089 Score=56.37 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcccC-CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 79 AVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 79 ~~~~~~~e~~~~~~-~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
+.++-++.|+..++ |..|+|.|.-|+||||++|.+++.||+
T Consensus 13 ~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 13 ATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34444677776655 678899999999999999999999996
No 223
>PRK09087 hypothetical protein; Validated
Probab=97.09 E-value=0.00054 Score=61.11 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=31.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
...++|.|++||||||+++.+++..+..|++.+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~ 78 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEI 78 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHc
Confidence 45699999999999999999999999999988644
No 224
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.04 E-value=0.00063 Score=64.65 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=29.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
.++.++|.|+||||||++++.+|..++..++..
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 356799999999999999999999999887654
No 225
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.04 E-value=0.0008 Score=60.01 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=28.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCce-ecCchHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVFE 130 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~-~d~D~li~~ 130 (281)
+.|.|+|+|||||||+++.+.+ .|.++ +...+-+++
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~ 37 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKE 37 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHH
Confidence 4799999999999999999865 46666 776665554
No 226
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.03 E-value=0.0012 Score=60.85 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=25.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCce
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~ 121 (281)
...++|.|+||+|||++++.+|..++..+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45689999999999999999999998654
No 227
>PRK04195 replication factor C large subunit; Provisional
Probab=97.01 E-value=0.0011 Score=65.39 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=29.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
...++|.|+||+||||+++.||+.+|+.++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 67899999999999999999999999887654
No 228
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.00 E-value=0.00072 Score=65.35 Aligned_cols=34 Identities=24% Similarity=0.148 Sum_probs=30.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
-.++.|+|.|+||||||++++.+|..++..++..
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 3578899999999999999999999999888654
No 229
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.99 E-value=0.00092 Score=58.99 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=31.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh-----CCceecCchHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLV 128 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l-----~~~~~d~D~li 128 (281)
-.+..++|+|++|+|||++++.++..+ .+.+++.....
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 346789999999999999999999876 56777776654
No 230
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.97 E-value=0.00075 Score=57.55 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 023493 95 SVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l 117 (281)
.|+|+|+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999888
No 231
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.95 E-value=0.0032 Score=57.54 Aligned_cols=55 Identities=24% Similarity=0.198 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcc---------cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC--chHHHHHhC
Q 023493 79 AVKKKAADISTE---------LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (281)
Q Consensus 79 ~~~~~~~e~~~~---------~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~--D~li~~~~g 133 (281)
.-|+||.=|... --+++|++.||||+|||.+||+||.....+++.. -.++-+..|
T Consensus 128 eAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 128 EAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred HHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence 556666655533 4478999999999999999999999999888753 445544444
No 232
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.00077 Score=64.58 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=28.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCch
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~ 126 (281)
.+.+|-||||+||||+|+.||..+++.|.-...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence 456799999999999999999999998875443
No 233
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.95 E-value=0.00087 Score=53.13 Aligned_cols=35 Identities=26% Similarity=0.149 Sum_probs=27.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li 128 (281)
.+..+.|+|++||||||+++.+. -|-..++.|++.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~ 48 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI--KRKHRLVGDDNV 48 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHH
Confidence 46889999999999999999987 344456666553
No 234
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.94 E-value=0.00052 Score=56.17 Aligned_cols=28 Identities=36% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 96 VFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 96 i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
|+|.|+||+||||+++.||+.+|..|.+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 7899999999999999999999987754
No 235
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.94 E-value=0.00084 Score=57.40 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=24.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
..+++|+||+|+|||.+++.||+.+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999999999999985
No 236
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.94 E-value=0.00099 Score=59.61 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=28.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCch
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDS 126 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~ 126 (281)
.+..++|.|++||||||+++.++..+. +.|++.+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 456899999999999999999997654 45666654
No 237
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.003 Score=59.57 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=32.3
Q ss_pred HhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 87 ~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
+..+.-+++|+.+||.|.|||.+|+.||+-.|.||+
T Consensus 44 lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFi 79 (444)
T COG1220 44 LRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFI 79 (444)
T ss_pred HhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 445577899999999999999999999999999886
No 238
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.0086 Score=58.69 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=31.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
+.|+=+...||||||+++.|.+-+||+++..|++
T Consensus 375 tll~pia~igcgktt~ak~l~~lf~w~~vqnd~l 408 (758)
T COG5324 375 TLLVPIATIGCGKTTVAKILEKLFGWPVVQNDNL 408 (758)
T ss_pred EEEEEEEEeccCcccHHHHHHHHcCCcccccCCC
Confidence 4677788999999999999999999999999997
No 239
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.91 E-value=0.00093 Score=62.55 Aligned_cols=32 Identities=22% Similarity=0.137 Sum_probs=27.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
.....++|.|+||+||||+++.+|+.+++.+.
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 34567999999999999999999999997653
No 240
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.003 Score=58.96 Aligned_cols=36 Identities=28% Similarity=0.212 Sum_probs=33.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
....|+|+||.+||||.+|-.||+++|...++.|+.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 356899999999999999999999999999999986
No 241
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.90 E-value=0.00077 Score=55.35 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
.|+|+|++||||||+++.|++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 3789999999999999999987643
No 242
>PRK12377 putative replication protein; Provisional
Probab=96.89 E-value=0.0023 Score=58.06 Aligned_cols=47 Identities=21% Similarity=0.245 Sum_probs=32.5
Q ss_pred HHHHHhccc--CCcEEEEEccCCCCHHHHHHHHHHHh---CC--ceecCchHHH
Q 023493 83 KAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLVF 129 (281)
Q Consensus 83 ~~~e~~~~~--~~~~i~l~G~~GsGKstvak~La~~l---~~--~~~d~D~li~ 129 (281)
.+.+++..+ ....++|.|+||+|||+++.+++..+ |+ .|++..+++.
T Consensus 89 ~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 89 QAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 344444332 34689999999999999999999876 33 3555555554
No 243
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.87 E-value=0.00087 Score=62.54 Aligned_cols=83 Identities=16% Similarity=0.069 Sum_probs=51.2
Q ss_pred hccCCccccccccccccCcc--cccccCCCcch----HHHHHHHHHhcc----cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 48 ISRKPRITTRSIADDTTSNT--VTKVAAEDPSF----AVKKKAADISTE----LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 48 ~~r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~----~~~~~~~e~~~~----~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
..|+.+...++++.+.++.. ..+++.+|... .+.+.+.++... ..++.++|.|++|+|||+++.++|..+
T Consensus 101 ~~r~~~~~~~~i~~a~~p~~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 101 EADEEKAIKKRIQSIYMPKDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred HHHHHHHHHHHHHHcCCCHhHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33455556666666665421 24556666543 222233444332 246789999999999999999999876
Q ss_pred ---CC--ceecCchHHHH
Q 023493 118 ---RY--YYFDSDSLVFE 130 (281)
Q Consensus 118 ---~~--~~~d~D~li~~ 130 (281)
|+ .|+....++.+
T Consensus 181 ~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 181 AKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred HHcCCCEEEEEHHHHHHH
Confidence 43 45566666544
No 244
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.87 E-value=0.0011 Score=64.94 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=29.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
..+..++|.|+||||||++++.+|..++..++.
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 356789999999999999999999999988764
No 245
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.86 E-value=0.0015 Score=62.26 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=26.9
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhC--Cceec
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFD 123 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l~--~~~~d 123 (281)
.+.|+.|+|.|+||||||.+|-.+|+.|| .||..
T Consensus 47 K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 47 KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp --TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 37799999999999999999999999998 77764
No 246
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.86 E-value=0.0015 Score=63.28 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=28.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
....++|.|+||+||||+++.+++.++..++..
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 445789999999999999999999999887654
No 247
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0021 Score=60.85 Aligned_cols=43 Identities=26% Similarity=0.223 Sum_probs=37.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceec--CchHHHHHhC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAG 133 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d--~D~li~~~~g 133 (281)
-+++=|+|.||||+|||-+||++|...++.|+. ...++.++.|
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiG 227 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIG 227 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhc
Confidence 457789999999999999999999999999875 4677777777
No 248
>PLN03025 replication factor C subunit; Provisional
Probab=96.85 E-value=0.0016 Score=60.79 Aligned_cols=39 Identities=21% Similarity=0.078 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 79 ~~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+.+....+...-+...++|.|+||+||||+++.+|+.+
T Consensus 20 ~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 20 DAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344444444444444568899999999999999999987
No 249
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.85 E-value=0.0012 Score=62.16 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=31.0
Q ss_pred HHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 85 ~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
..+.+.+ ++.|+|+|.+||||||+++.|+..++.+++.
T Consensus 155 ~~~~~~~-~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 155 REVRPFF-VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred HHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 3333444 4689999999999999999999999988864
No 250
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0011 Score=62.03 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=31.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCc
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D 125 (281)
+...+|+++||.|||||-+|+-||+.|++||-=+|
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD 129 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD 129 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence 77899999999999999999999999999986444
No 251
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.85 E-value=0.0014 Score=62.66 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=32.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcee--cCchHHHHHhC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~--d~D~li~~~~g 133 (281)
+..+.|.||||||||.+|+++|+.+|+.++ +..++.....|
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 566777899999999999999999999876 45556555555
No 252
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.008 Score=52.81 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=28.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC-CceecCchHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSLV 128 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~-~~~~d~D~li 128 (281)
-+|.|.|...|||||+|+.|...++ ...++-|+++
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFy 40 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFY 40 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHccCCeeecccccc
Confidence 4577788888999999999998884 6667766664
No 253
>PRK06620 hypothetical protein; Validated
Probab=96.84 E-value=0.00098 Score=58.98 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=26.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
..++|.|++||||||+++++++..+..++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 569999999999999999999988876655
No 254
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.84 E-value=0.00085 Score=57.04 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=29.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHhC-CceecCchH
Q 023493 96 VFLVGMNNAIKTHLGKFLADALR-YYYFDSDSL 127 (281)
Q Consensus 96 i~l~G~~GsGKstvak~La~~l~-~~~~d~D~l 127 (281)
|+=++.+||||||+|..|++-+| |-++-.|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 45579999999999999999999 999999997
No 255
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.82 E-value=0.0011 Score=52.78 Aligned_cols=26 Identities=31% Similarity=0.206 Sum_probs=19.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
++..++|.|++|+|||++++.+++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999999876
No 256
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0035 Score=62.98 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=33.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC--chHHHHHhC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~--D~li~~~~g 133 (281)
+.-|+|+||||||||-+||++|..-|..|+.. -.++..+.|
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG 587 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG 587 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence 56699999999999999999999999988763 445544444
No 257
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.81 E-value=0.0011 Score=62.18 Aligned_cols=34 Identities=35% Similarity=0.352 Sum_probs=30.5
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
..+.+..++|.|+||+|||++++.+|+.++.+|+
T Consensus 39 a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 39 ALLAGGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred HHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 4467788999999999999999999999998775
No 258
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.78 E-value=0.013 Score=55.64 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=70.8
Q ss_pred CCCcch-HHHHHHHHHhcc--cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHH-Hhhhhhh
Q 023493 73 AEDPSF-AVKKKAADISTE--LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAF-RESDEKG 148 (281)
Q Consensus 73 ~~d~~~-~~~~~~~e~~~~--~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif-~~~ge~~ 148 (281)
.++..+ ..++...+.... .+...+++.|+.|||||++...|.+. |+..+|+..+.+. .| .....+. ..-....
T Consensus 118 ~L~GG~~awr~~~~~~~~~~~~~~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aeh-rG-S~fG~~~~~qpsQ~~ 194 (345)
T PRK11784 118 RLEGGYKAYRRFVIDTLEEAPAQFPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANH-RG-SSFGRLGGPQPSQKD 194 (345)
T ss_pred EEcCCHHHHHHhhHHHHhhhcccCceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhh-cc-ccccCCCCCCcchHH
Confidence 455555 444443333322 34566889999999999999999765 8889998776643 22 1110110 0111233
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCC---ceeech-hhHHhccCCcEEEEEcCHHHHHhh
Q 023493 149 YQQAETEVLKQLSSMGRLVVCAGN---GAVQSS-ANLALLRHGISLWIDVPPGMVARM 202 (281)
Q Consensus 149 fr~~e~~vl~~l~~~~~~VIa~G~---g~v~~~-~~~~~L~~~~vV~L~~s~e~l~~R 202 (281)
|...=...+.++.....++|-+-+ |-+.-+ .-+..++.+..|+|++|.+.+.+|
T Consensus 195 Fe~~l~~~l~~~~~~~~i~vE~Es~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~Rv~~ 252 (345)
T PRK11784 195 FENLLAEALLKLDPARPIVVEDESRRIGRVHLPEALYEAMQQAPIVVVEAPLEERVER 252 (345)
T ss_pred HHHHHHHHHHcCCCCCeEEEEeccccccCccCCHHHHHHHhhCCEEEEECCHHHHHHH
Confidence 432222233333222234443311 122222 234566778999999999999998
No 259
>PF05729 NACHT: NACHT domain
Probab=96.78 E-value=0.0013 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
..++|.|.+|+||||+++.++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 3689999999999999999997663
No 260
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.76 E-value=0.0011 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHhC
Q 023493 96 VFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 96 i~l~G~~GsGKstvak~La~~l~ 118 (281)
|+|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999997654
No 261
>PRK06893 DNA replication initiation factor; Validated
Probab=96.75 E-value=0.0026 Score=56.68 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=28.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh-----CCceecCc
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSD 125 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l-----~~~~~d~D 125 (281)
.....++|.|+||+|||+++.+++..+ +..|++..
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 344678999999999999999999765 56666654
No 262
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0012 Score=59.32 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=23.7
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
..+|.++.|+|.+||||||+++.|+-
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 36799999999999999999999983
No 263
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.74 E-value=0.0013 Score=58.37 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=27.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
..++|.||.|+|||.+|-.||+++|++.+..|.+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri 35 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRI 35 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence 4678999999999999999999999999988875
No 264
>CHL00176 ftsH cell division protein; Validated
Probab=96.71 E-value=0.0016 Score=66.61 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=28.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
++.|+|.|+||+|||++|+.+|...+++++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 56799999999999999999999999888754
No 265
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.71 E-value=0.0014 Score=65.91 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=34.2
Q ss_pred cccCCCcch---HHHHHHHHHh------cccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 70 KVAAEDPSF---AVKKKAADIS------TELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 70 ~~~~~d~~~---~~~~~~~e~~------~~~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.+.-|+..+ ++++++.+.. -.-++++++|+||||+||||+++.|++.+.
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 345556444 4445533322 124678999999999999999999998764
No 266
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.69 E-value=0.0014 Score=58.20 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=22.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La 114 (281)
-+|..++|+||+||||||+.+.|.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999999985
No 267
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.69 E-value=0.0032 Score=52.66 Aligned_cols=36 Identities=31% Similarity=0.300 Sum_probs=31.0
Q ss_pred HHHHhccc-CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 84 AADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 84 ~~e~~~~~-~~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
+..+...+ .|..|+|.|.-|+||||++|.+++.||.
T Consensus 15 g~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 15 GERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred HHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 55555554 7899999999999999999999999994
No 268
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.67 E-value=0.04 Score=48.79 Aligned_cols=47 Identities=28% Similarity=0.390 Sum_probs=32.6
Q ss_pred HHHHhcc--cCCcEEEEEccCCCCHHHHHHHHHHHh-------CCceecCchHHHH
Q 023493 84 AADISTE--LKGTSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDSDSLVFE 130 (281)
Q Consensus 84 ~~e~~~~--~~~~~i~l~G~~GsGKstvak~La~~l-------~~~~~d~D~li~~ 130 (281)
+..++.. .....++|.|++|+|||++.++++..+ .+.|++.+++...
T Consensus 23 ~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~ 78 (219)
T PF00308_consen 23 AKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE 78 (219)
T ss_dssp HHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred HHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence 4445433 233568999999999999999998653 2457777776544
No 269
>PHA03136 thymidine kinase; Provisional
Probab=96.66 E-value=0.031 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=22.2
Q ss_pred CCcEEEEEcCHHHHHhh-hcCCCCCc
Q 023493 186 HGISLWIDVPPGMVARM-DHSGFPES 210 (281)
Q Consensus 186 ~~~vV~L~~s~e~l~~R-~~R~r~~~ 210 (281)
.+.+|||+++++++.+| .+|||+.+
T Consensus 192 pD~IIyL~l~~e~~~~RI~kRgR~~E 217 (378)
T PHA03136 192 GGNIVIMDLDECEHAERIIARGRPGE 217 (378)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCcc
Confidence 46899999999999999 88998864
No 270
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.64 E-value=0.0016 Score=52.44 Aligned_cols=27 Identities=41% Similarity=0.353 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 368899999999999999999997543
No 271
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.64 E-value=0.002 Score=54.40 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=26.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh---C--CceecCchH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL 127 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~l 127 (281)
.++++|+||+||||++..++..+ | +.++|.|..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 57899999999999999998765 4 345787753
No 272
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.64 E-value=0.0017 Score=55.90 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..|.|+||+||||||+-|.+|.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHh
Confidence 3688999999999999999999985
No 273
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0039 Score=61.83 Aligned_cols=39 Identities=28% Similarity=0.228 Sum_probs=31.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC-chHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS-DSLVFEA 131 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~-D~li~~~ 131 (281)
++-|+|+||||+|||-+|+++|-.-|++|+.+ +..+.++
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 35699999999999999999999999998764 4444443
No 274
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.61 E-value=0.0017 Score=54.57 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=18.9
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
..++.+++|+|++|+|||++.+.+.+.+.
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999998886553
No 275
>PF13245 AAA_19: Part of AAA domain
Probab=96.58 E-value=0.0027 Score=47.08 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=18.6
Q ss_pred CCcEEEEEccCCCCHH-HHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKT-HLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKs-tvak~La~~l 117 (281)
+....+|.|+|||||| |++..++..+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566777999999999 5555555443
No 276
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=96.58 E-value=0.0046 Score=52.24 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=35.9
Q ss_pred CCcEEEEEcCHHHHHhh--h---cCCCCCcChHHHHHHHHHHhhcccc---CCcEEEEcCccccccccCCCCCCCHHHHH
Q 023493 186 HGISLWIDVPPGMVARM--D---HSGFPESEVLPQLFALYKEMRDGYA---TADVTVSLQKVASQLGYDDLDAVTTEDMT 257 (281)
Q Consensus 186 ~~~vV~L~~s~e~l~~R--~---~R~r~~~~~~~~l~~~~~~r~~~y~---~ad~~Id~~~~a~~l~~~dts~~speeva 257 (281)
.++.|||+++++++++| . ..|.. ...+.+.....+|+..-. .+.+ .+|.+..+.|||++++++++
T Consensus 80 A~~KifLtAs~e~RA~RR~~e~~~~g~~--~~~e~v~~~i~~RD~~D~~R~~aPL-----~~a~DAi~IDts~lti~evv 152 (157)
T PF02224_consen 80 ADLKIFLTASPEVRARRRYKELQEKGKK--VSYEEVLEDIKERDERDSNREVAPL-----KKAEDAIVIDTSNLTIEEVV 152 (157)
T ss_dssp -SEEEEEE--HHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHCTSSS-S-----S--TTSEEEETTTS-HHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCC--CCHHHHHHHHHhhChhhccCccCCC-----ccCCCeEEEECCCCCHHHHH
Confidence 57999999999999988 2 23321 123334433444432110 1111 12333334457899999999
Q ss_pred HHHHH
Q 023493 258 LEVLK 262 (281)
Q Consensus 258 ~~Il~ 262 (281)
+.|++
T Consensus 153 ~~il~ 157 (157)
T PF02224_consen 153 EKILE 157 (157)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99975
No 277
>PRK10536 hypothetical protein; Provisional
Probab=96.57 E-value=0.002 Score=58.79 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=36.2
Q ss_pred ccccccCcccc-cccCCCcchHHH--HH-HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 59 IADDTTSNTVT-KVAAEDPSFAVK--KK-AADISTELKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 59 ~~~~~~~~~~~-~~~~~d~~~~~~--~~-~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.....++. .+ .++.+|+...-+ +. ..-+....+...++++|++|||||+++..++..
T Consensus 37 ~~~~~~p~-~~~~~~~~~~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 37 VQMGGVEA-IGMARDSRDTSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred HhhccCCc-cccchhhcCCccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34445544 44 667777764111 11 222223345679999999999999999998863
No 278
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.55 E-value=0.0019 Score=64.31 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=25.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~ 120 (281)
.++.|+|.||||||||++++.+|+.++..
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 46779999999999999999999998654
No 279
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.54 E-value=0.0039 Score=57.80 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 79 ~~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.+.+....+...-....++|.|+||+||||+++.+++.+.
T Consensus 22 ~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 22 EVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444433433322223689999999999999999998874
No 280
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.51 E-value=0.0025 Score=66.17 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=33.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecC--chHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~--D~li~~~~g 133 (281)
.+..|+|.|+||||||++|+.+|..++.+|+.. .+++....|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vG 529 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVG 529 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccC
Confidence 456799999999999999999999999988754 344444444
No 281
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.51 E-value=0.0023 Score=54.83 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=22.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999999974
No 282
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.50 E-value=0.0023 Score=55.93 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999998543
No 283
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.50 E-value=0.0026 Score=54.02 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=28.1
Q ss_pred HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 84 ~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
..+|...++++.++|+|++|+||||+...|...
T Consensus 26 ~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 26 IEELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 456667788899999999999999999998643
No 284
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.50 E-value=0.003 Score=52.94 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=29.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCch
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~ 126 (281)
..++-|+|+|++|+||||++..|.++ |+.++.-|.
T Consensus 12 ~~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~ 46 (149)
T cd01918 12 VGGIGVLITGPSGIGKSELALELIKR-GHRLVADDR 46 (149)
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCE
Confidence 45788999999999999999998875 888875443
No 285
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.50 E-value=0.0024 Score=66.22 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=29.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
-.+..|+|.|+||||||++++.+|..++.+++..
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 3467899999999999999999999999877643
No 286
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.50 E-value=0.0027 Score=56.00 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=24.8
Q ss_pred HHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 83 ~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
++.+++.- .+..|+++|+||+|||++|+.+..-|.
T Consensus 13 rAL~iAAa-G~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 13 RALEIAAA-GGHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp HHHHHHHH-CC--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred HHHHHHHc-CCCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 45666544 367999999999999999999996553
No 287
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.49 E-value=0.0026 Score=57.12 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=23.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
+..++|+|++|+||||+++.++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44789999999999999999998875
No 288
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.49 E-value=0.0024 Score=55.87 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999854
No 289
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.49 E-value=0.0024 Score=55.64 Aligned_cols=26 Identities=46% Similarity=0.455 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999853
No 290
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.48 E-value=0.015 Score=59.11 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHHhcccC--CcEEEEEccCCCCHHHHHHHHHHHh-------CCceecCchHHHHH
Q 023493 84 AADISTELK--GTSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDSDSLVFEA 131 (281)
Q Consensus 84 ~~e~~~~~~--~~~i~l~G~~GsGKstvak~La~~l-------~~~~~d~D~li~~~ 131 (281)
+..++.... ...++|.|.+|+|||++++.++..+ .+.|+++++++.++
T Consensus 303 a~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 303 AVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred HHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 555554321 2348999999999999999999754 24677777766443
No 291
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.48 E-value=0.0023 Score=62.69 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=25.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
..+..|+|.|+||+|||++|+.||..+.
T Consensus 192 ~~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 192 TIKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999999999999999999998875
No 292
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.48 E-value=0.0025 Score=55.50 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999999854
No 293
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.48 E-value=0.0035 Score=65.08 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=27.7
Q ss_pred HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 84 ~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+.++...-...+++|+|+||+|||++++.||+.+
T Consensus 194 ~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 194 TIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred HHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3344444456789999999999999999999987
No 294
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0025 Score=55.46 Aligned_cols=26 Identities=31% Similarity=0.218 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999853
No 295
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0027 Score=62.72 Aligned_cols=42 Identities=26% Similarity=0.226 Sum_probs=32.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCc--hHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--SLVFEAAG 133 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D--~li~~~~g 133 (281)
..+.++|.||||||||.+|+++|..++.+|+..+ ++..+..|
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vG 318 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVG 318 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccc
Confidence 4557999999999999999999999998887543 44433333
No 296
>PRK13695 putative NTPase; Provisional
Probab=96.47 E-value=0.0028 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=21.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l 117 (281)
+.|+|+|.+|+||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999988765
No 297
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.0025 Score=57.50 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=23.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+-+.+|-
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999999983
No 298
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.0025 Score=56.45 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999998543
No 299
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.45 E-value=0.0026 Score=55.34 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999999854
No 300
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.45 E-value=0.0025 Score=65.11 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=31.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
.+.+..+|+|+||.||||+|..+|+.-||..++.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 5678899999999999999999999999999864
No 301
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.44 E-value=0.0025 Score=60.26 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=22.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La 114 (281)
-.|..++|+||+||||||+-+.+|
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 368899999999999999999998
No 302
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0027 Score=56.35 Aligned_cols=26 Identities=31% Similarity=0.261 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999999853
No 303
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.42 E-value=0.0055 Score=56.65 Aligned_cols=44 Identities=16% Similarity=0.059 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcccC-CcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 79 AVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 79 ~~~~~~~e~~~~~~-~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
.+++...++...-+ +..++|.|++|+||||+++.+++.++..++
T Consensus 28 ~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 28 ADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred HHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 34444444433322 345555899999999999999998876543
No 304
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0028 Score=55.28 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999853
No 305
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.41 E-value=0.0029 Score=54.75 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999999854
No 306
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.41 E-value=0.0034 Score=61.17 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 79 ~~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.|+++..| +..-|++.|+||+||||+|++||+-+.
T Consensus 254 kl~eRL~e-----raeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 254 KLKERLEE-----RAEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred HHHHHHHh-----hhcceEEecCCCCChhHHHHHHHHHHH
Confidence 77777655 344589999999999999999998663
No 307
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.40 E-value=0.0033 Score=54.05 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.+.+++|+|++||||||+.+.|...+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 578999999999999999999987553
No 308
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.40 E-value=0.0029 Score=55.00 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+-.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999853
No 309
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.0029 Score=55.52 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999854
No 310
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.40 E-value=0.0027 Score=55.58 Aligned_cols=26 Identities=38% Similarity=0.316 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999843
No 311
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.39 E-value=0.004 Score=65.75 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=29.6
Q ss_pred HHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 82 KKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 82 ~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+++.++...-...+++|+|+||+|||++++.||..+
T Consensus 188 ~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 188 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred HHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 345555555566789999999999999999999987
No 312
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.39 E-value=0.003 Score=56.19 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999854
No 313
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.38 E-value=0.0027 Score=55.33 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 36899999999999999999999753
No 314
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.38 E-value=0.003 Score=54.78 Aligned_cols=25 Identities=44% Similarity=0.478 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999999853
No 315
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.37 E-value=0.0028 Score=56.15 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 7899999999999999999999853
No 316
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.37 E-value=0.0031 Score=55.53 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=24.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999999999998655
No 317
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.0031 Score=55.77 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=24.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999998544
No 318
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.37 E-value=0.0031 Score=55.20 Aligned_cols=26 Identities=38% Similarity=0.324 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999999853
No 319
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.36 E-value=0.0034 Score=54.85 Aligned_cols=35 Identities=26% Similarity=0.192 Sum_probs=27.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~l 127 (281)
++.|+|+||.|+||||.+-.||..+. ..++.+|..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 46799999999999999999996653 345666654
No 320
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.36 E-value=0.0032 Score=55.19 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999999854
No 321
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0025 Score=65.62 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=32.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC--chHHHHHhC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~--D~li~~~~g 133 (281)
++=++|+||||||||-+||++|..-|+||+.. .++++...|
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g 386 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG 386 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence 45689999999999999999999999999864 344444333
No 322
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.0032 Score=62.20 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
+..++|.||||+||||+|+.+|+.+++
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345889999999999999999999875
No 323
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0033 Score=53.23 Aligned_cols=26 Identities=38% Similarity=0.264 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999999754
No 324
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0034 Score=53.44 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999999843
No 325
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.35 E-value=0.0033 Score=54.78 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999998543
No 326
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.35 E-value=0.003 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
+.|+|+|++||||||+++.|-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 5799999999999999999964
No 327
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.35 E-value=0.0033 Score=58.00 Aligned_cols=30 Identities=27% Similarity=0.213 Sum_probs=26.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
--.++|.||||.||||+|..+|..+|..+-
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k 81 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVNLK 81 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCCeE
Confidence 356899999999999999999999997664
No 328
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.33 E-value=0.0039 Score=54.53 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=29.4
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCch
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~ 126 (281)
..+|..+.|.|+|||||||++..+|... | ..|+|++.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 3668999999999999999999998654 2 44677653
No 329
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.32 E-value=0.0034 Score=65.39 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=26.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
.++|+||+|+|||++|+.||+.++.+++.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~ 518 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEE
Confidence 68999999999999999999999987753
No 330
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.0036 Score=59.57 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=24.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
+..++|+|++|+||||+|+.+|+.+.+
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 345789999999999999999999875
No 331
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.31 E-value=0.0034 Score=55.74 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999999864
No 332
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.31 E-value=0.0038 Score=56.66 Aligned_cols=34 Identities=26% Similarity=0.154 Sum_probs=29.6
Q ss_pred HHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 86 e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
-+.+..+|..+.|+|++|+||||+++.++..+..
T Consensus 9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred eecccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3457789999999999999999999999987654
No 333
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.30 E-value=0.0036 Score=53.97 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999998543
No 334
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.30 E-value=0.0043 Score=53.85 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=29.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCch
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~ 126 (281)
.+|..+.|+|+||||||+++..++... | ..|+|++.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 568999999999999999999988533 3 56777764
No 335
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.30 E-value=0.0035 Score=55.35 Aligned_cols=26 Identities=38% Similarity=0.365 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999998543
No 336
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.30 E-value=0.0035 Score=55.04 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999853
No 337
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.0037 Score=54.88 Aligned_cols=25 Identities=36% Similarity=0.297 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999854
No 338
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.30 E-value=0.0036 Score=55.47 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999999854
No 339
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.29 E-value=0.0036 Score=55.57 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999843
No 340
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0036 Score=53.98 Aligned_cols=24 Identities=42% Similarity=0.357 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+|..+.|+|++||||||+.+.|+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999999984
No 341
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.29 E-value=0.0076 Score=54.53 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=31.6
Q ss_pred HHHHhcccC--CcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCchHHH
Q 023493 84 AADISTELK--GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVF 129 (281)
Q Consensus 84 ~~e~~~~~~--~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~li~ 129 (281)
+.++..... ...++|.|++|+|||+++..++..+ | +.+++..+++.
T Consensus 88 a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 88 ARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred HHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 444443322 2579999999999999999999877 3 23455555543
No 342
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.28 E-value=0.0038 Score=55.03 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999999854
No 343
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.0037 Score=55.64 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999854
No 344
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.27 E-value=0.0037 Score=55.63 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999853
No 345
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.26 E-value=0.0038 Score=54.88 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=22.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3688999999999999999999984
No 346
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.26 E-value=0.0036 Score=50.85 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.1
Q ss_pred EEEEccCCCCHHHHHHHHHHHh
Q 023493 96 VFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 96 i~l~G~~GsGKstvak~La~~l 117 (281)
++|+|+||+||||+++.++..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998765
No 347
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.0038 Score=61.62 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=25.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~ 120 (281)
+..++|+|++|+||||+|+.||+.+++.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4568999999999999999999999874
No 348
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.25 E-value=0.0039 Score=55.05 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999999853
No 349
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.24 E-value=0.0039 Score=55.62 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999998543
No 350
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.24 E-value=0.0042 Score=52.80 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999999754
No 351
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.24 E-value=0.0041 Score=55.62 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=22.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La 114 (281)
-+|..+.|+||+||||||+-..++
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999999987
No 352
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.24 E-value=0.0039 Score=53.59 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 47899999999999999999999853
No 353
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.24 E-value=0.0041 Score=54.92 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999999853
No 354
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.011 Score=60.96 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=33.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC--chHHHHHhC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~--D~li~~~~g 133 (281)
..=|+|.||||+|||-+||++|-.+...|++. -.++....|
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVG 747 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVG 747 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhc
Confidence 55699999999999999999999999998764 455554444
No 355
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.22 E-value=0.0041 Score=56.20 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999854
No 356
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.22 E-value=0.0042 Score=55.70 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 37899999999999999999999854
No 357
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=96.22 E-value=0.066 Score=47.07 Aligned_cols=72 Identities=11% Similarity=0.037 Sum_probs=40.8
Q ss_pred EEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhccc-----cCCcEEEEcCccccccccCCCCCCCHHHHHHHHHH
Q 023493 189 SLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGY-----ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLK 262 (281)
Q Consensus 189 vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~y-----~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~ 262 (281)
.|||..+.+.+.++ ..|.-......+.+++++++.+..- +...++++. ...+-..+.++.
T Consensus 125 ~Iflas~ide~LqaNS~Rsda~k~~~dtiRki~EklE~PD~~ea~e~NSitLeg--------------~dmd~~gealla 190 (291)
T KOG4622|consen 125 IIFLASGIDEALQANSHRSDAEKQKNDTIRKIFEKLEDPDEIEALEENSITLEG--------------DDMDIDGEALLA 190 (291)
T ss_pred eeehhhhHHHHHHhccccccchhCccHHHHHHHHhccCccHHHHHHhcceeecc--------------ccccchHHHHHH
Confidence 59999999999998 3332111111245666666554322 123456653 233334555677
Q ss_pred HHHHHHhhchhh
Q 023493 263 EIEKLTRKKKMM 274 (281)
Q Consensus 263 ~i~~~~~~~~~~ 274 (281)
.+.-....|+|-
T Consensus 191 fia~~~d~~ame 202 (291)
T KOG4622|consen 191 FIAFDFDAKAME 202 (291)
T ss_pred HHHHhccCCccc
Confidence 777777777664
No 358
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.21 E-value=0.0042 Score=55.53 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999998543
No 359
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.21 E-value=0.0045 Score=52.24 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999997543
No 360
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.21 E-value=0.0076 Score=55.34 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=27.6
Q ss_pred HHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 80 ~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
+.+.............++|+|++|+||||+++.+++.+.
T Consensus 25 ~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 25 IVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 333333333333334689999999999999999998873
No 361
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.21 E-value=0.0042 Score=54.26 Aligned_cols=25 Identities=36% Similarity=0.283 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+.-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999853
No 362
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=96.21 E-value=0.05 Score=48.79 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
..|+|+|.|.|||||.|+.|.+.|.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~ 26 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALK 26 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHH
Confidence 5799999999999999999998773
No 363
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.0038 Score=54.34 Aligned_cols=24 Identities=42% Similarity=0.351 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+| .+.|+|++||||||+.+.|+..
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCC
Confidence 46 8999999999999999999843
No 364
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.20 E-value=0.0045 Score=53.88 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhC
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.|+|+|++||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999998887664
No 365
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.19 E-value=0.0044 Score=53.80 Aligned_cols=25 Identities=32% Similarity=0.228 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+.-
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999853
No 366
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.19 E-value=0.0043 Score=56.55 Aligned_cols=37 Identities=30% Similarity=0.288 Sum_probs=29.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh----CCceecCchH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL----RYYYFDSDSL 127 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l----~~~~~d~D~l 127 (281)
-+|..+.|+||.||||||+-|.|+.-+ |-.++|.-++
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 468999999999999999999999744 3456665443
No 367
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.19 E-value=0.0046 Score=53.56 Aligned_cols=25 Identities=40% Similarity=0.383 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999999753
No 368
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.19 E-value=0.0044 Score=55.48 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999998643
No 369
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.19 E-value=0.0044 Score=54.73 Aligned_cols=25 Identities=36% Similarity=0.297 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999854
No 370
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.18 E-value=0.005 Score=58.08 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=30.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCchHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFE 130 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~li~~ 130 (281)
.+..++|.|++|+|||+++.++|..+ | +.|+++++++..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 35889999999999999999999765 2 456666666543
No 371
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0044 Score=55.97 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999999999998643
No 372
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.17 E-value=0.0043 Score=54.69 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=24.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+|..+.|+|++||||||+.+.|+..+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 478999999999999999999998544
No 373
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0037 Score=60.68 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=27.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
+-.+|-||||+||||+..++|..|+|..+|.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 4478999999999999999999999988874
No 374
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.17 E-value=0.0078 Score=59.97 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=25.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~ 120 (281)
+..++|+|++|+||||+|+.+|+.+++.
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4578999999999999999999999874
No 375
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.16 E-value=0.0046 Score=54.99 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999998543
No 376
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.16 E-value=0.005 Score=52.12 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999999854
No 377
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.16 E-value=0.0047 Score=54.79 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999999854
No 378
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.16 E-value=0.0045 Score=69.16 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=32.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceec--CchHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVF 129 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d--~D~li~ 129 (281)
-.++-|+|+||||||||.+||+||...+++++. +.+++.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 346789999999999999999999999999864 445553
No 379
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.15 E-value=0.0064 Score=54.83 Aligned_cols=35 Identities=23% Similarity=0.124 Sum_probs=29.1
Q ss_pred HHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 83 ~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+..-++...+.++++|.||||+||||-...||..|
T Consensus 38 rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 38 RLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 34445666788899999999999999999999765
No 380
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.15 E-value=0.0046 Score=54.75 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999999854
No 381
>PRK10908 cell division protein FtsE; Provisional
Probab=96.15 E-value=0.0048 Score=54.20 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999999843
No 382
>PLN02796 D-glycerate 3-kinase
Probab=96.15 E-value=0.0048 Score=58.51 Aligned_cols=27 Identities=15% Similarity=-0.080 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
+...|.|+|++||||||+++.|...+.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 456689999999999999999998774
No 383
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.0051 Score=51.96 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=24.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+|..+.|+|++||||||+.+.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999999999998643
No 384
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.15 E-value=0.0074 Score=62.57 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=29.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCch
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~ 126 (281)
+...++|.|+||+||||+|+.+++.++..|+..+.
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 44578999999999999999999998877765443
No 385
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.15 E-value=0.0051 Score=51.73 Aligned_cols=26 Identities=35% Similarity=0.351 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999743
No 386
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.14 E-value=0.0048 Score=52.65 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=23.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999998543
No 387
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.14 E-value=0.0047 Score=55.40 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999999854
No 388
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.14 E-value=0.0074 Score=54.67 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=29.8
Q ss_pred HHHHHHHHHhccc--CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 79 AVKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 79 ~~~~~~~e~~~~~--~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.+.+...++.... .+.+|+|+|++||||||+.+.|.+.+.
T Consensus 111 ~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 111 SIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp HCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred hhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcc
Confidence 3344455544433 578899999999999999999987664
No 389
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.0047 Score=54.69 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999854
No 390
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.14 E-value=0.0048 Score=55.59 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=24.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 368999999999999999999999643
No 391
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.13 E-value=0.0047 Score=55.34 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999998543
No 392
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.13 E-value=0.0051 Score=57.75 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=28.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCch
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~ 126 (281)
++..|.|+|++|+||||++..||..+ | +.++++|.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 47899999999999999999999765 3 34466665
No 393
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.13 E-value=0.0066 Score=63.85 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=27.4
Q ss_pred HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 84 ~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
..++...-...+++|+|+||+|||++++.||..+
T Consensus 191 ~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 191 VIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred HHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4444444456789999999999999999999876
No 394
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.0048 Score=55.18 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999999953
No 395
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.13 E-value=0.0052 Score=52.37 Aligned_cols=25 Identities=40% Similarity=0.317 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999753
No 396
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.005 Score=54.25 Aligned_cols=27 Identities=33% Similarity=0.298 Sum_probs=24.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+|..+.|+|++||||||+.+.|+..+
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 478999999999999999999998544
No 397
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0043 Score=53.96 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=24.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+|..+.|+|++||||||+.+.|+..+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 478999999999999999999998643
No 398
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.12 E-value=0.0051 Score=53.61 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999999854
No 399
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.12 E-value=0.0051 Score=53.13 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999754
No 400
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.12 E-value=0.005 Score=52.86 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=22.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La 114 (281)
-+|..+.|+|++||||||+.+.+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999999885
No 401
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.0049 Score=54.81 Aligned_cols=26 Identities=31% Similarity=0.213 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999998543
No 402
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.12 E-value=0.0083 Score=51.77 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=20.4
Q ss_pred cccCCcE-EEEEccCCCCHHHHHHHHHHHh
Q 023493 89 TELKGTS-VFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 89 ~~~~~~~-i~l~G~~GsGKstvak~La~~l 117 (281)
..++... .+|.|||||||||+...+...+
T Consensus 12 ~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 12 SALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 3344444 7888999999998777776655
No 403
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0051 Score=53.54 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999853
No 404
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.12 E-value=0.0051 Score=53.90 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.++..
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 36899999999999999999999854
No 405
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.12 E-value=0.0047 Score=58.72 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=21.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La 114 (281)
+|..+.|.||+||||||+-+++|
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 67889999999999999999998
No 406
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0049 Score=55.22 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999999854
No 407
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.11 E-value=0.0051 Score=54.33 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=24.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999999998543
No 408
>PRK06921 hypothetical protein; Provisional
Probab=96.11 E-value=0.0078 Score=55.03 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=41.6
Q ss_pred cCCccccccccccccCcc--cccccCCCcch------HHHHHHHHHhccc------CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 50 RKPRITTRSIADDTTSNT--VTKVAAEDPSF------AVKKKAADISTEL------KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 50 r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~------~~~~~~~e~~~~~------~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+..+.+.+.++++..+.. ......|+... .+...+.++...+ .+..++|.|++|+|||+++.+++.
T Consensus 60 ~~~~~~~~~~~~s~i~~~~~~~~F~nf~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~ 139 (266)
T PRK06921 60 VEQRKIERLLKASEITEAFRKLTFKNFKTEGKPQAIKDAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAAN 139 (266)
T ss_pred HHHHHHHHHHHHcCCCHHHHhhhhhcCccCCccHHHHHHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHH
Confidence 344455666777765431 13344444431 2222344444322 468899999999999999999997
Q ss_pred Hh
Q 023493 116 AL 117 (281)
Q Consensus 116 ~l 117 (281)
.+
T Consensus 140 ~l 141 (266)
T PRK06921 140 EL 141 (266)
T ss_pred HH
Confidence 65
No 409
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.11 E-value=0.005 Score=55.46 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=24.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999998543
No 410
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.11 E-value=0.0052 Score=54.78 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999998543
No 411
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.0048 Score=60.01 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=29.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----C--CceecCchHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDSLV 128 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l----~--~~~~d~D~li 128 (281)
++..|+|+|++||||||++..||..+ | +.++++|...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 45779999999999999999999754 2 4467887743
No 412
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.0051 Score=55.09 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999999999853
No 413
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.10 E-value=0.0049 Score=53.88 Aligned_cols=27 Identities=37% Similarity=0.365 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+||+|++|+||||+-|++....
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 468899999999999999999997543
No 414
>PRK04296 thymidine kinase; Provisional
Probab=96.10 E-value=0.0051 Score=53.23 Aligned_cols=25 Identities=20% Similarity=-0.011 Sum_probs=22.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l 117 (281)
|+.++++|+||+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999888766
No 415
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.09 E-value=0.0053 Score=55.07 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 78999999999999999999998754
No 416
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.09 E-value=0.0052 Score=55.37 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999999854
No 417
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.08 E-value=0.0053 Score=54.89 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999999854
No 418
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.08 E-value=0.0042 Score=55.90 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.2
Q ss_pred EEccCCCCHHHHHHHHHHHhCC
Q 023493 98 LVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 98 l~G~~GsGKstvak~La~~l~~ 119 (281)
++||+||||||+++.+.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999988753
No 419
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.08 E-value=0.0054 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999999854
No 420
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0053 Score=55.69 Aligned_cols=27 Identities=30% Similarity=0.258 Sum_probs=24.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999998543
No 421
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0049 Score=55.25 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999999853
No 422
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.08 E-value=0.0055 Score=53.10 Aligned_cols=26 Identities=31% Similarity=0.212 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.++..
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 37999999999999999999999753
No 423
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.08 E-value=0.0048 Score=60.97 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=25.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
+.+..|+|.|+||+|||++|+.|++..+
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 6788999999999999999999998764
No 424
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.08 E-value=0.011 Score=56.38 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=23.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
..+.+++|.|+||+|||++++.+++.+
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 355779999999999999999999766
No 425
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.07 E-value=0.0055 Score=53.53 Aligned_cols=26 Identities=27% Similarity=0.292 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999999853
No 426
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.07 E-value=0.0056 Score=62.74 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=28.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
++.|+|+|+||+|||++++.++..++.+|+..
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 35599999999999999999999999988754
No 427
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0054 Score=55.26 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999999954
No 428
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.07 E-value=0.0056 Score=50.52 Aligned_cols=26 Identities=38% Similarity=0.381 Sum_probs=23.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 36899999999999999999999754
No 429
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.06 E-value=0.0056 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=24.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+|..+.|+|++||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 478999999999999999999998543
No 430
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.05 E-value=0.0055 Score=54.18 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999853
No 431
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.05 E-value=0.0057 Score=53.76 Aligned_cols=26 Identities=35% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999998543
No 432
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0048 Score=58.56 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=29.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
+.+.|+|.||||+|||-+||++|++.|..|++.
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 357799999999999999999999999998753
No 433
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.05 E-value=0.0051 Score=55.74 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999999854
No 434
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.04 E-value=0.0057 Score=54.24 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 78999999999999999999998543
No 435
>PRK05642 DNA replication initiation factor; Validated
Probab=96.04 E-value=0.0058 Score=54.63 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=29.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH-----hCCceecCchHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA-----LRYYYFDSDSLVF 129 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~-----l~~~~~d~D~li~ 129 (281)
...++|.|++|+|||++++.++.. ..+.|++.+++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 367899999999999999998753 3456777777653
No 436
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0058 Score=54.72 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999999999854
No 437
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.04 E-value=0.0099 Score=55.93 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
..+..++|.|+||+|||++++.+.+.+
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998765
No 438
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.04 E-value=0.0058 Score=53.08 Aligned_cols=25 Identities=40% Similarity=0.349 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999999854
No 439
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0057 Score=55.46 Aligned_cols=26 Identities=15% Similarity=0.108 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 37899999999999999999999863
No 440
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.04 E-value=0.0059 Score=53.72 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 378999999999999999999998543
No 441
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.03 E-value=0.0055 Score=55.98 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=28.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh----CCceecCch
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL----RYYYFDSDS 126 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l----~~~~~d~D~ 126 (281)
-+|..+.|+|.+||||||+|+.+..-. |-.+++..+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~ 76 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD 76 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc
Confidence 378999999999999999999997533 344555443
No 442
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.0062 Score=58.40 Aligned_cols=37 Identities=24% Similarity=0.163 Sum_probs=29.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh----C---CceecCchH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL----R---YYYFDSDSL 127 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l----~---~~~~d~D~l 127 (281)
-++.+++|+|++|+||||++..||..+ | +.++.+|.+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 347899999999999999999999653 3 235666665
No 443
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.02 E-value=0.0058 Score=54.84 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+|..+.|+|++||||||+.+.|+.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999999984
No 444
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.006 Score=54.65 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999999864
No 445
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.01 E-value=0.007 Score=57.48 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=30.2
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHhC--Ccee
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYF 122 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l~--~~~~ 122 (281)
+.+.|+-|++.||||+|||.+|-.+|+.|| .||+
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 348899999999999999999999999998 5654
No 446
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.006 Score=54.53 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999999864
No 447
>PRK08116 hypothetical protein; Validated
Probab=96.00 E-value=0.0079 Score=55.03 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=28.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---CC--ceecCchHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLVF 129 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l---~~--~~~d~D~li~ 129 (281)
+..++|.|++|+|||+++..++..+ |. .|++..+++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~ 155 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN 155 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 4459999999999999999999875 33 3456555544
No 448
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.00 E-value=0.0059 Score=55.51 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999998543
No 449
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.99 E-value=0.0061 Score=54.54 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+|..+.|+|++||||||+.+.|+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999999985
No 450
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.99 E-value=0.0061 Score=55.35 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999999854
No 451
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.99 E-value=0.0061 Score=63.29 Aligned_cols=33 Identities=33% Similarity=0.299 Sum_probs=27.5
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcee--cCchH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSL 127 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~--d~D~l 127 (281)
.++|+||+|+|||++|+.||+.++..++ |+..+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 5789999999999999999999987654 44444
No 452
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.99 E-value=0.006 Score=55.53 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999999854
No 453
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.98 E-value=0.0062 Score=54.46 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999999853
No 454
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.98 E-value=0.0067 Score=55.67 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=28.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCchH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL 127 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~l 127 (281)
++..|.|+|++|+||||++..||..+ | ..++|+|.+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 35789999999999999999999665 4 345787753
No 455
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.98 E-value=0.0058 Score=55.56 Aligned_cols=26 Identities=27% Similarity=0.083 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 36899999999999999999999854
No 456
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.98 E-value=0.0063 Score=54.49 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+|..+.|+|++||||||+.+.|+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999999985
No 457
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.98 E-value=0.0064 Score=53.78 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999999998543
No 458
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.98 E-value=0.0051 Score=54.81 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=28.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g 133 (281)
+..++|.|+||+||||+|+.|+. ...+++.|.-.....|
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g 50 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIG 50 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccC
Confidence 46799999999999999999862 3556666664433333
No 459
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.97 E-value=0.0082 Score=42.90 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La 114 (281)
.|...+|+|+.||||||+-.++.
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35579999999999999997764
No 460
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.97 E-value=0.0066 Score=53.14 Aligned_cols=26 Identities=27% Similarity=0.138 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999999853
No 461
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0065 Score=54.31 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999998643
No 462
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.97 E-value=0.0075 Score=47.01 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~ 116 (281)
.|+++|.+|+||||+.+.|...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
No 463
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.96 E-value=0.0062 Score=55.94 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999998543
No 464
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.96 E-value=0.0065 Score=55.14 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=24.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 378999999999999999999998643
No 465
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.96 E-value=0.0058 Score=54.65 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+|..+.|+|++||||||+.+.|+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999999999985
No 466
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.96 E-value=0.0067 Score=53.12 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999999854
No 467
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.95 E-value=0.0069 Score=52.61 Aligned_cols=26 Identities=27% Similarity=0.137 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|+|++||||||+.+.|+..
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999999753
No 468
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.95 E-value=0.0066 Score=54.04 Aligned_cols=26 Identities=38% Similarity=0.291 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999999854
No 469
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.95 E-value=0.0068 Score=57.89 Aligned_cols=29 Identities=21% Similarity=0.152 Sum_probs=26.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
++|..|.|+|.+||||||++..|.+.|.-
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~ 31 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSE 31 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 57899999999999999999999988763
No 470
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.95 E-value=0.0067 Score=55.04 Aligned_cols=27 Identities=37% Similarity=0.308 Sum_probs=24.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999998543
No 471
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.95 E-value=0.0065 Score=55.27 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999999864
No 472
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.94 E-value=0.0066 Score=52.46 Aligned_cols=26 Identities=27% Similarity=0.200 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999998654
No 473
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.94 E-value=0.0067 Score=54.45 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=24.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999999998543
No 474
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.0066 Score=55.21 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=24.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999998543
No 475
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.94 E-value=0.0072 Score=55.65 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=28.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----C---CceecCchH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R---YYYFDSDSL 127 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l----~---~~~~d~D~l 127 (281)
++..|.|+|+.|+||||++..||..+ | +.++++|.+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 46789999999999999999998654 3 346788764
No 476
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.94 E-value=0.0076 Score=49.12 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 79 ~~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.+++++..++. ....|+|+|.+||||+++|+.|...-+
T Consensus 9 ~l~~~l~~~a~--~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 9 RLRRQLERLAK--SSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp HHHHHHHHHHC--SSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred HHHHHHHHHhC--CCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 45555666664 567799999999999999999987544
No 477
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.93 E-value=0.0066 Score=55.23 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999998543
No 478
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.93 E-value=0.0075 Score=51.79 Aligned_cols=27 Identities=26% Similarity=0.039 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
....+.|+|++||||||+.+.|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456789999999999999999987764
No 479
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.93 E-value=0.0068 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.++..
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999853
No 480
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.0069 Score=55.00 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 78999999999999999999998654
No 481
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.93 E-value=0.0062 Score=54.05 Aligned_cols=25 Identities=40% Similarity=0.381 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 7899999999999999999999843
No 482
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.92 E-value=0.0068 Score=53.90 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999999854
No 483
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.92 E-value=0.0065 Score=55.43 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999854
No 484
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.007 Score=58.02 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=28.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
+-|+++||||+|||-+||++|-.-|..||+.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 5689999999999999999999999988764
No 485
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.92 E-value=0.0069 Score=54.51 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999998543
No 486
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.91 E-value=0.0068 Score=55.11 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999853
No 487
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.91 E-value=0.007 Score=54.44 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999999854
No 488
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.91 E-value=0.0063 Score=60.45 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=23.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999999964
No 489
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.91 E-value=0.0084 Score=49.55 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=20.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l 117 (281)
+.|.++|+.||||||+++.|...|
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998655
No 490
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.90 E-value=0.0073 Score=54.11 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999999953
No 491
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.89 E-value=0.01 Score=53.60 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+...|.|.|++|+||||+|+.+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 46788999999999999999999976
No 492
>PRK13768 GTPase; Provisional
Probab=95.89 E-value=0.0081 Score=54.42 Aligned_cols=33 Identities=36% Similarity=0.423 Sum_probs=25.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh---CC--ceecCch
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS 126 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l---~~--~~~d~D~ 126 (281)
+.|++.|++|+||||++..++..+ |. ..+|.|.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 578999999999999999888665 33 3556654
No 493
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.89 E-value=0.0073 Score=54.01 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 29 RGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999999653
No 494
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.88 E-value=0.0074 Score=54.45 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+.-+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 32 RNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999999643
No 495
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=95.88 E-value=0.33 Score=41.47 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=25.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCce
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYY 121 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~ 121 (281)
+.|.|+|+-.|||||+++.||..++.++
T Consensus 9 K~VailG~ESsGKStLv~kLA~~fnt~~ 36 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANIFNTTS 36 (187)
T ss_pred eeeeeecCcccChHHHHHHHHHHhCCCc
Confidence 6789999999999999999999998743
No 496
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.88 E-value=0.0071 Score=55.30 Aligned_cols=27 Identities=41% Similarity=0.342 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999998543
No 497
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.88 E-value=0.0067 Score=54.08 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999999865
No 498
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.88 E-value=0.0075 Score=53.66 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999999854
No 499
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.88 E-value=0.0075 Score=52.32 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999864
No 500
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.88 E-value=0.0072 Score=54.56 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+|..+.|+|++||||||+.+.|+..+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999999998654
Done!