Query 023493
Match_columns 281
No_of_seqs 232 out of 1398
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nwj_A ATSK2; P loop, shikimat 100.0 6E-30 2.1E-34 229.8 17.2 196 78-274 33-244 (250)
2 3vaa_A Shikimate kinase, SK; s 99.9 2.4E-26 8.2E-31 197.6 17.9 164 92-268 24-197 (199)
3 3trf_A Shikimate kinase, SK; a 99.9 4.7E-26 1.6E-30 192.4 15.1 164 93-269 5-177 (185)
4 1via_A Shikimate kinase; struc 99.9 7.9E-24 2.7E-28 177.8 16.1 155 94-265 5-165 (175)
5 2iyv_A Shikimate kinase, SK; t 99.9 1.3E-23 4.4E-28 177.5 16.4 160 93-265 2-167 (184)
6 1zuh_A Shikimate kinase; alpha 99.9 1.2E-23 4.3E-28 175.2 15.3 153 93-264 7-167 (168)
7 1e6c_A Shikimate kinase; phosp 99.9 8.5E-23 2.9E-27 170.1 14.8 158 94-265 3-169 (173)
8 1kag_A SKI, shikimate kinase I 99.9 7.8E-23 2.7E-27 170.5 14.3 161 93-266 4-172 (173)
9 2pt5_A Shikimate kinase, SK; a 99.9 1.9E-22 6.7E-27 167.3 15.6 158 94-265 1-162 (168)
10 3fdi_A Uncharacterized protein 99.8 8.6E-20 3E-24 158.2 12.7 159 90-266 3-198 (201)
11 3hdt_A Putative kinase; struct 99.8 2.2E-19 7.5E-24 158.4 11.5 156 93-266 14-218 (223)
12 3lw7_A Adenylate kinase relate 99.7 2.4E-17 8.1E-22 135.7 14.5 156 94-268 2-178 (179)
13 1knq_A Gluconate kinase; ALFA/ 99.7 1.3E-16 4.3E-21 133.3 18.7 153 91-265 6-172 (175)
14 1y63_A LMAJ004144AAA protein; 99.7 3.4E-18 1.2E-22 145.0 7.2 156 91-267 8-178 (184)
15 3kb2_A SPBC2 prophage-derived 99.7 2.5E-16 8.6E-21 130.1 15.7 146 94-268 2-168 (173)
16 4eun_A Thermoresistant glucoki 99.7 7.4E-16 2.5E-20 132.0 18.7 155 91-266 27-193 (200)
17 2c95_A Adenylate kinase 1; tra 99.7 3.4E-17 1.2E-21 138.4 10.2 160 92-267 8-194 (196)
18 1qf9_A UMP/CMP kinase, protein 99.7 1.1E-16 3.6E-21 134.6 12.2 158 93-266 6-191 (194)
19 2cdn_A Adenylate kinase; phosp 99.7 7E-17 2.4E-21 138.1 11.0 159 90-264 17-199 (201)
20 1qhx_A CPT, protein (chloramph 99.7 8.1E-17 2.8E-21 134.5 11.2 154 92-264 2-176 (178)
21 3iij_A Coilin-interacting nucl 99.7 8.2E-17 2.8E-21 135.2 11.1 150 91-268 9-175 (180)
22 3cm0_A Adenylate kinase; ATP-b 99.7 7.6E-17 2.6E-21 135.6 10.0 155 92-264 3-184 (186)
23 1zak_A Adenylate kinase; ATP:A 99.7 4.1E-16 1.4E-20 135.4 14.9 165 92-274 4-218 (222)
24 2bwj_A Adenylate kinase 5; pho 99.7 1.9E-16 6.6E-21 134.1 12.1 160 92-267 11-197 (199)
25 2h92_A Cytidylate kinase; ross 99.7 3.9E-17 1.3E-21 141.1 5.1 159 92-265 2-216 (219)
26 1tev_A UMP-CMP kinase; ploop, 99.7 1.1E-15 3.8E-20 128.5 13.8 159 92-266 2-194 (196)
27 3be4_A Adenylate kinase; malar 99.7 6.9E-16 2.4E-20 134.0 12.3 111 91-205 3-132 (217)
28 3t61_A Gluconokinase; PSI-biol 99.7 7.4E-16 2.5E-20 131.8 12.0 149 93-267 18-180 (202)
29 1kht_A Adenylate kinase; phosp 99.6 4.1E-15 1.4E-19 124.8 15.2 158 92-264 2-191 (192)
30 3a4m_A L-seryl-tRNA(SEC) kinas 99.6 1.9E-15 6.5E-20 135.2 13.1 151 92-265 3-172 (260)
31 1aky_A Adenylate kinase; ATP:A 99.6 2.2E-15 7.5E-20 130.7 13.0 107 92-202 3-128 (220)
32 2rhm_A Putative kinase; P-loop 99.6 3.6E-15 1.2E-19 125.6 12.5 142 92-236 4-167 (193)
33 2vli_A Antibiotic resistance p 99.6 1.6E-15 5.6E-20 126.8 10.1 152 92-268 4-173 (183)
34 2pbr_A DTMP kinase, thymidylat 99.6 3.7E-15 1.3E-19 125.4 12.0 158 94-267 1-192 (195)
35 1ak2_A Adenylate kinase isoenz 99.6 1E-14 3.5E-19 127.9 14.9 160 91-267 14-231 (233)
36 1ukz_A Uridylate kinase; trans 99.6 5E-15 1.7E-19 126.4 12.4 159 92-267 14-202 (203)
37 1jjv_A Dephospho-COA kinase; P 99.6 3.4E-15 1.1E-19 127.9 11.4 154 94-269 3-199 (206)
38 2grj_A Dephospho-COA kinase; T 99.6 7.4E-15 2.5E-19 126.4 13.0 147 91-267 10-187 (192)
39 1zd8_A GTP:AMP phosphotransfer 99.6 2.8E-15 9.6E-20 130.7 10.1 110 92-202 6-124 (227)
40 2if2_A Dephospho-COA kinase; a 99.6 7.3E-16 2.5E-20 131.7 5.2 154 94-268 2-193 (204)
41 4e22_A Cytidylate kinase; P-lo 99.6 9E-15 3.1E-19 130.3 12.2 39 92-130 26-64 (252)
42 1vht_A Dephospho-COA kinase; s 99.6 1.9E-14 6.5E-19 124.4 12.5 156 92-269 3-197 (218)
43 4i1u_A Dephospho-COA kinase; s 99.6 2.8E-14 9.6E-19 124.7 13.4 158 94-269 10-204 (210)
44 1q3t_A Cytidylate kinase; nucl 99.6 3.2E-15 1.1E-19 131.3 7.5 155 91-266 14-234 (236)
45 2jaq_A Deoxyguanosine kinase; 99.6 3.2E-14 1.1E-18 120.5 13.2 157 94-267 1-201 (205)
46 3umf_A Adenylate kinase; rossm 99.5 1.6E-13 5.6E-18 120.3 16.2 158 91-266 27-213 (217)
47 3ake_A Cytidylate kinase; CMP 99.5 2.3E-13 7.7E-18 115.8 16.7 148 94-265 3-207 (208)
48 1nks_A Adenylate kinase; therm 99.5 1.7E-13 6E-18 114.8 15.7 158 94-264 2-193 (194)
49 3cr8_A Sulfate adenylyltranfer 99.5 1.9E-14 6.6E-19 142.1 11.1 160 91-266 367-539 (552)
50 3fb4_A Adenylate kinase; psych 99.5 4.5E-14 1.5E-18 121.5 11.7 108 94-205 1-127 (216)
51 1uf9_A TT1252 protein; P-loop, 99.5 4E-15 1.4E-19 126.3 4.8 152 92-268 7-195 (203)
52 2xb4_A Adenylate kinase; ATP-b 99.5 8.3E-14 2.9E-18 121.5 13.0 110 94-206 1-127 (223)
53 1cke_A CK, MSSA, protein (cyti 99.5 1.8E-14 6.1E-19 124.7 8.3 163 93-268 5-224 (227)
54 3sr0_A Adenylate kinase; phosp 99.5 9.5E-14 3.3E-18 120.8 12.8 106 94-202 1-120 (206)
55 3dl0_A Adenylate kinase; phosp 99.5 5.9E-14 2E-18 121.0 10.8 108 94-205 1-127 (216)
56 2f6r_A COA synthase, bifunctio 99.5 2.2E-13 7.4E-18 123.4 14.6 159 93-269 75-271 (281)
57 1e4v_A Adenylate kinase; trans 99.5 5.5E-13 1.9E-17 115.1 15.8 105 94-202 1-119 (214)
58 2z0h_A DTMP kinase, thymidylat 99.5 8.7E-14 3E-18 117.4 10.5 161 94-268 1-193 (197)
59 1nn5_A Similar to deoxythymidy 99.5 1.8E-13 6.3E-18 117.0 12.6 165 92-270 8-204 (215)
60 2v54_A DTMP kinase, thymidylat 99.5 6.1E-14 2.1E-18 119.2 9.3 160 92-269 3-193 (204)
61 1uj2_A Uridine-cytidine kinase 99.5 1.8E-14 6.1E-19 127.9 6.0 162 92-268 21-235 (252)
62 1m7g_A Adenylylsulfate kinase; 99.5 3.6E-14 1.2E-18 122.4 7.7 156 88-266 20-202 (211)
63 3tlx_A Adenylate kinase 2; str 99.5 3.6E-13 1.2E-17 119.2 13.7 112 91-205 27-156 (243)
64 2plr_A DTMP kinase, probable t 99.5 3.4E-12 1.2E-16 108.5 19.1 159 91-270 2-211 (213)
65 1ly1_A Polynucleotide kinase; 99.5 1E-13 3.5E-18 115.1 9.4 155 94-266 3-172 (181)
66 2yvu_A Probable adenylyl-sulfa 99.5 1.6E-14 5.5E-19 121.9 4.1 157 91-268 11-185 (186)
67 1x6v_B Bifunctional 3'-phospho 99.4 2E-13 6.9E-18 136.3 10.4 160 91-267 50-223 (630)
68 3r20_A Cytidylate kinase; stru 99.4 6.1E-12 2.1E-16 111.5 18.3 156 92-268 8-229 (233)
69 2wwf_A Thymidilate kinase, put 99.4 5.3E-13 1.8E-17 114.0 10.4 157 91-267 8-200 (212)
70 2pez_A Bifunctional 3'-phospho 99.4 3.8E-13 1.3E-17 112.7 8.9 156 91-266 3-175 (179)
71 3uie_A Adenylyl-sulfate kinase 99.4 1.8E-12 6.2E-17 110.8 12.8 150 91-267 23-195 (200)
72 4eaq_A DTMP kinase, thymidylat 99.4 6.6E-12 2.2E-16 110.5 15.6 163 91-269 24-227 (229)
73 3gmt_A Adenylate kinase; ssgci 99.4 1.5E-12 5.1E-17 115.2 10.8 110 92-205 7-131 (230)
74 1m8p_A Sulfate adenylyltransfe 99.4 3.2E-13 1.1E-17 134.0 5.8 159 92-266 395-566 (573)
75 2qor_A Guanylate kinase; phosp 99.3 2.6E-12 8.9E-17 110.2 9.2 154 90-268 9-198 (204)
76 4edh_A DTMP kinase, thymidylat 99.3 1.8E-10 6.2E-15 100.4 18.5 162 91-269 4-209 (213)
77 2gks_A Bifunctional SAT/APS ki 99.3 3.6E-12 1.2E-16 125.7 7.8 157 92-266 371-540 (546)
78 2bdt_A BH3686; alpha-beta prot 99.3 1.9E-11 6.6E-16 102.9 10.3 151 93-261 2-168 (189)
79 2qt1_A Nicotinamide riboside k 99.3 1E-11 3.5E-16 106.2 8.7 159 91-266 19-205 (207)
80 3a8t_A Adenylate isopentenyltr 99.3 2.1E-12 7.3E-17 120.1 4.1 128 92-220 39-211 (339)
81 4hlc_A DTMP kinase, thymidylat 99.2 3.7E-10 1.3E-14 97.8 16.8 160 93-269 2-203 (205)
82 1p5z_B DCK, deoxycytidine kina 99.2 1.4E-10 4.7E-15 103.3 14.0 71 186-269 175-261 (263)
83 3lv8_A DTMP kinase, thymidylat 99.2 9E-11 3.1E-15 104.1 12.3 162 91-270 25-232 (236)
84 1zp6_A Hypothetical protein AT 99.2 7E-11 2.4E-15 99.2 10.3 161 90-266 6-175 (191)
85 3hjn_A DTMP kinase, thymidylat 99.2 6.7E-10 2.3E-14 95.5 15.2 159 94-268 1-193 (197)
86 3v9p_A DTMP kinase, thymidylat 99.2 1.1E-10 3.7E-15 103.0 10.3 159 91-266 23-226 (227)
87 4tmk_A Protein (thymidylate ki 99.2 9.1E-10 3.1E-14 96.0 15.7 161 91-269 1-209 (213)
88 2bbw_A Adenylate kinase 4, AK4 99.1 1.7E-10 5.9E-15 101.5 10.6 107 92-202 26-144 (246)
89 1ltq_A Polynucleotide kinase; 99.1 2E-10 6.7E-15 103.6 10.4 110 94-206 3-127 (301)
90 2axn_A 6-phosphofructo-2-kinas 99.1 1.1E-10 3.7E-15 114.5 8.4 111 92-202 34-164 (520)
91 3ld9_A DTMP kinase, thymidylat 99.1 1.7E-10 5.7E-15 101.5 8.4 163 91-271 19-220 (223)
92 2p5t_B PEZT; postsegregational 99.1 5.4E-10 1.8E-14 99.1 10.4 107 91-202 30-153 (253)
93 2vp4_A Deoxynucleoside kinase; 99.0 1.8E-09 6E-14 94.4 11.6 71 186-269 147-227 (230)
94 3zvl_A Bifunctional polynucleo 99.0 7.6E-10 2.6E-14 105.5 9.4 127 92-237 257-395 (416)
95 3tr0_A Guanylate kinase, GMP k 99.0 4.7E-09 1.6E-13 88.8 12.3 65 187-266 119-186 (205)
96 3tmk_A Thymidylate kinase; pho 99.0 4E-09 1.4E-13 92.2 11.6 162 92-270 4-206 (216)
97 2ze6_A Isopentenyl transferase 98.9 3.4E-10 1.2E-14 100.7 4.2 108 94-205 2-138 (253)
98 1gvn_B Zeta; postsegregational 98.9 7.2E-09 2.5E-13 94.0 12.4 109 91-202 31-158 (287)
99 3asz_A Uridine kinase; cytidin 98.9 1.5E-08 5E-13 86.5 12.8 37 92-128 5-43 (211)
100 1bif_A 6-phosphofructo-2-kinas 98.9 1.2E-09 4.1E-14 105.5 5.7 64 92-155 38-106 (469)
101 3tau_A Guanylate kinase, GMP k 98.9 1.5E-09 5.1E-14 93.4 5.7 67 186-267 120-189 (208)
102 2ocp_A DGK, deoxyguanosine kin 98.9 1.1E-07 3.9E-12 83.1 17.5 30 92-121 1-31 (241)
103 1g8f_A Sulfate adenylyltransfe 98.8 1.9E-08 6.6E-13 98.3 12.3 35 92-126 394-435 (511)
104 2j41_A Guanylate kinase; GMP, 98.8 1.7E-08 5.7E-13 85.3 9.0 65 188-267 120-187 (207)
105 3crm_A TRNA delta(2)-isopenten 98.7 4.6E-09 1.6E-13 97.2 3.5 79 94-174 6-104 (323)
106 1a7j_A Phosphoribulokinase; tr 98.7 2.3E-08 8E-13 90.8 7.7 37 92-128 4-45 (290)
107 2jeo_A Uridine-cytidine kinase 98.7 2.6E-07 8.9E-12 81.1 12.9 36 92-127 24-69 (245)
108 3d3q_A TRNA delta(2)-isopenten 98.6 2.3E-08 7.8E-13 93.1 5.3 99 94-197 8-126 (340)
109 3c8u_A Fructokinase; YP_612366 98.6 1.4E-07 4.7E-12 80.8 9.4 36 91-126 20-60 (208)
110 1kgd_A CASK, peripheral plasma 98.6 4.5E-08 1.6E-12 82.0 5.6 29 90-118 2-30 (180)
111 1gtv_A TMK, thymidylate kinase 98.6 8.8E-09 3E-13 87.7 0.8 26 94-119 1-26 (214)
112 2ga8_A Hypothetical 39.9 kDa p 98.6 3E-09 1E-13 99.6 -2.6 61 94-156 25-105 (359)
113 1rz3_A Hypothetical protein rb 98.5 8.7E-08 3E-12 81.7 6.0 37 91-127 20-61 (201)
114 3a00_A Guanylate kinase, GMP k 98.5 7.9E-08 2.7E-12 80.9 5.2 66 186-265 114-183 (186)
115 3lnc_A Guanylate kinase, GMP k 98.4 9.8E-08 3.3E-12 82.9 4.0 65 188-267 142-209 (231)
116 1sq5_A Pantothenate kinase; P- 98.4 1E-06 3.5E-11 80.3 10.8 37 91-127 78-121 (308)
117 1dek_A Deoxynucleoside monopho 98.4 2.7E-07 9.3E-12 81.9 6.4 36 94-129 2-37 (241)
118 3ch4_B Pmkase, phosphomevalona 98.3 1.2E-05 4.3E-10 69.3 14.3 153 92-267 10-190 (202)
119 1ex7_A Guanylate kinase; subst 98.3 3.2E-07 1.1E-11 78.3 3.8 25 94-118 2-26 (186)
120 3exa_A TRNA delta(2)-isopenten 98.1 3.2E-06 1.1E-10 77.8 6.6 36 92-127 2-37 (322)
121 3tqc_A Pantothenate kinase; bi 98.1 4E-06 1.4E-10 77.3 6.8 34 94-127 93-133 (321)
122 3aez_A Pantothenate kinase; tr 98.0 2.2E-05 7.5E-10 71.9 10.7 27 91-117 88-114 (312)
123 1p6x_A Thymidine kinase; P-loo 98.0 1.7E-05 5.7E-10 73.6 9.7 29 91-119 5-33 (334)
124 1s96_A Guanylate kinase, GMP k 98.0 3.3E-05 1.1E-09 67.1 10.0 28 91-118 14-41 (219)
125 1lvg_A Guanylate kinase, GMP k 97.9 2.2E-05 7.6E-10 66.7 8.1 26 92-117 3-28 (198)
126 3foz_A TRNA delta(2)-isopenten 97.9 1.2E-05 4E-10 73.9 5.3 36 92-127 9-44 (316)
127 3eph_A TRNA isopentenyltransfe 97.8 1.6E-05 5.4E-10 75.5 5.1 80 93-172 2-99 (409)
128 3ec2_A DNA replication protein 97.7 5.5E-05 1.9E-09 62.6 6.8 50 79-128 21-79 (180)
129 1lv7_A FTSH; alpha/beta domain 97.7 3.1E-05 1E-09 67.8 5.1 32 93-124 45-76 (257)
130 3t15_A Ribulose bisphosphate c 97.7 3E-05 1E-09 69.9 4.4 32 93-124 36-67 (293)
131 1osn_A Thymidine kinase, VZV-T 97.7 0.00019 6.5E-09 66.6 9.9 31 90-120 9-40 (341)
132 2qgz_A Helicase loader, putati 97.6 6.4E-05 2.2E-09 68.4 6.0 90 43-132 93-197 (308)
133 3eie_A Vacuolar protein sortin 97.6 9.1E-05 3.1E-09 67.4 6.9 33 92-124 50-82 (322)
134 3h4m_A Proteasome-activating n 97.6 8.8E-05 3E-09 65.6 6.5 33 91-123 49-81 (285)
135 4b4t_K 26S protease regulatory 97.6 7.1E-05 2.4E-09 71.6 6.2 34 91-124 204-237 (428)
136 3m6a_A ATP-dependent protease 97.6 2.4E-05 8.3E-10 76.8 3.1 75 49-123 43-138 (543)
137 3cf0_A Transitional endoplasmi 97.6 9.1E-05 3.1E-09 66.8 6.6 43 91-133 47-91 (301)
138 4b4t_L 26S protease subunit RP 97.6 8.4E-05 2.9E-09 71.2 6.3 34 91-124 213-246 (437)
139 2qz4_A Paraplegin; AAA+, SPG7, 97.5 6E-05 2.1E-09 65.5 4.6 32 92-123 38-69 (262)
140 4b4t_M 26S protease regulatory 97.5 0.00012 4E-09 70.2 7.0 34 91-124 213-246 (434)
141 3hws_A ATP-dependent CLP prote 97.5 5.2E-05 1.8E-09 70.0 4.3 34 92-125 50-83 (363)
142 2w58_A DNAI, primosome compone 97.5 0.00013 4.6E-09 61.1 6.4 36 94-129 55-95 (202)
143 3b9p_A CG5977-PA, isoform A; A 97.5 0.00015 5E-09 64.6 7.0 32 92-123 53-84 (297)
144 4b4t_I 26S protease regulatory 97.5 0.00012 4.1E-09 70.0 6.2 33 92-124 215-247 (437)
145 1g41_A Heat shock protein HSLU 97.5 6.4E-05 2.2E-09 72.2 4.4 36 91-126 48-83 (444)
146 4b4t_J 26S protease regulatory 97.5 0.00014 4.8E-09 69.0 6.6 34 91-124 180-213 (405)
147 1jbk_A CLPB protein; beta barr 97.4 0.00026 8.9E-09 57.4 6.9 27 91-117 41-67 (195)
148 3n70_A Transport activator; si 97.4 0.00013 4.6E-09 58.5 5.0 37 79-117 12-48 (145)
149 1um8_A ATP-dependent CLP prote 97.4 8.9E-05 3E-09 68.7 4.3 34 92-125 71-104 (376)
150 2p65_A Hypothetical protein PF 97.4 0.00015 5.2E-09 58.9 5.1 27 91-117 41-67 (187)
151 3syl_A Protein CBBX; photosynt 97.4 8.8E-05 3E-09 66.3 3.8 27 91-117 65-91 (309)
152 1ofh_A ATP-dependent HSL prote 97.4 0.00011 3.6E-09 65.4 4.3 32 92-123 49-80 (310)
153 1d2n_A N-ethylmaleimide-sensit 97.4 9.6E-05 3.3E-09 65.2 3.9 34 91-124 62-95 (272)
154 2r62_A Cell division protease 97.4 6.7E-05 2.3E-09 65.9 2.7 32 93-124 44-75 (268)
155 4b4t_H 26S protease regulatory 97.4 0.00024 8.3E-09 68.4 6.7 34 91-124 241-274 (467)
156 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00031 1E-08 64.2 6.9 31 92-122 44-75 (322)
157 2c9o_A RUVB-like 1; hexameric 97.3 0.00023 7.7E-09 68.1 6.2 34 91-124 61-96 (456)
158 2qp9_X Vacuolar protein sortin 97.3 0.00027 9.4E-09 65.4 6.5 32 93-124 84-115 (355)
159 3ney_A 55 kDa erythrocyte memb 97.3 0.00015 5E-09 62.3 4.2 34 85-118 11-44 (197)
160 2kjq_A DNAA-related protein; s 97.3 0.00016 5.4E-09 58.8 3.8 34 92-125 35-73 (149)
161 3d8b_A Fidgetin-like protein 1 97.3 0.00044 1.5E-08 63.9 7.1 32 92-123 116-147 (357)
162 3bos_A Putative DNA replicatio 97.2 0.00033 1.1E-08 59.4 5.6 44 84-127 43-91 (242)
163 3vfd_A Spastin; ATPase, microt 97.2 0.00045 1.5E-08 64.4 6.8 32 92-123 147-178 (389)
164 4gp7_A Metallophosphoesterase; 97.2 0.00013 4.6E-09 60.2 2.6 36 91-128 7-42 (171)
165 3co5_A Putative two-component 97.2 0.00014 4.7E-09 58.4 2.5 41 79-122 15-55 (143)
166 2x8a_A Nuclear valosin-contain 97.2 0.00021 7.2E-09 63.9 3.8 30 94-123 45-74 (274)
167 1ixz_A ATP-dependent metallopr 97.2 0.00029 9.9E-09 61.4 4.5 31 94-124 50-80 (254)
168 3pfi_A Holliday junction ATP-d 97.2 0.00027 9.3E-09 64.0 4.3 33 92-124 54-86 (338)
169 1ye8_A Protein THEP1, hypothet 97.2 0.00024 8.1E-09 59.6 3.6 28 94-121 1-28 (178)
170 3cf2_A TER ATPase, transitiona 97.1 0.00064 2.2E-08 69.7 7.2 34 92-125 237-270 (806)
171 2ce7_A Cell division protein F 97.1 0.00067 2.3E-08 65.6 6.9 32 93-124 49-80 (476)
172 1in4_A RUVB, holliday junction 97.1 0.00033 1.1E-08 64.1 4.4 29 93-121 51-79 (334)
173 2qmh_A HPR kinase/phosphorylas 97.1 0.00025 8.4E-09 61.2 3.3 36 91-127 32-67 (205)
174 2chg_A Replication factor C sm 97.1 0.00055 1.9E-08 56.8 5.2 35 83-117 28-62 (226)
175 3pxg_A Negative regulator of g 97.1 0.0006 2E-08 65.5 6.1 44 82-125 190-243 (468)
176 1znw_A Guanylate kinase, GMP k 97.1 0.00048 1.7E-08 58.4 4.9 28 91-118 18-45 (207)
177 2zan_A Vacuolar protein sortin 97.1 0.00081 2.8E-08 64.1 6.9 39 92-130 166-207 (444)
178 2v3c_C SRP54, signal recogniti 97.0 0.00017 5.7E-09 69.0 1.6 97 17-126 21-137 (432)
179 1iy2_A ATP-dependent metallopr 97.0 0.0005 1.7E-08 60.9 4.5 31 94-124 74-104 (278)
180 1sxj_A Activator 1 95 kDa subu 97.0 0.00043 1.5E-08 67.2 4.4 31 93-123 77-107 (516)
181 1l8q_A Chromosomal replication 97.0 0.00043 1.5E-08 62.6 4.1 37 92-128 36-77 (324)
182 1z6g_A Guanylate kinase; struc 97.0 0.00039 1.3E-08 59.8 3.7 26 92-117 22-47 (218)
183 2qby_B CDC6 homolog 3, cell di 97.0 0.00086 2.9E-08 61.3 6.0 27 91-117 43-69 (384)
184 2r44_A Uncharacterized protein 96.9 0.00037 1.3E-08 63.1 3.2 30 93-122 46-75 (331)
185 1hqc_A RUVB; extended AAA-ATPa 96.9 0.00048 1.6E-08 61.7 3.5 31 92-122 37-67 (324)
186 3pxi_A Negative regulator of g 96.9 0.0014 4.8E-08 66.4 7.1 48 79-126 187-244 (758)
187 3uk6_A RUVB-like 2; hexameric 96.9 0.00064 2.2E-08 62.1 4.0 29 91-119 68-96 (368)
188 1odf_A YGR205W, hypothetical 3 96.8 0.00067 2.3E-08 61.3 3.8 38 91-128 29-74 (290)
189 1svm_A Large T antigen; AAA+ f 96.8 0.00085 2.9E-08 63.0 4.6 33 91-123 167-199 (377)
190 2ehv_A Hypothetical protein PH 96.8 0.00071 2.4E-08 58.1 3.7 24 91-114 28-51 (251)
191 3pvs_A Replication-associated 96.8 0.00074 2.5E-08 64.7 4.1 31 94-124 51-81 (447)
192 3te6_A Regulatory protein SIR3 96.8 0.00085 2.9E-08 61.6 4.3 28 90-117 42-69 (318)
193 1njg_A DNA polymerase III subu 96.8 0.0013 4.5E-08 55.0 5.2 27 93-119 45-71 (250)
194 2v1u_A Cell division control p 96.8 0.00061 2.1E-08 62.0 3.2 27 91-117 42-68 (387)
195 1htw_A HI0065; nucleotide-bind 96.8 0.00087 3E-08 55.2 3.8 27 91-117 31-57 (158)
196 2bjv_A PSP operon transcriptio 96.8 0.0013 4.6E-08 57.5 5.2 27 92-118 28-54 (265)
197 1fnn_A CDC6P, cell division co 96.8 0.0016 5.6E-08 59.4 5.9 23 95-117 46-68 (389)
198 3hu3_A Transitional endoplasmi 96.8 0.00088 3E-08 64.9 4.2 34 91-124 236-269 (489)
199 4fcw_A Chaperone protein CLPB; 96.7 0.00082 2.8E-08 59.8 3.6 24 94-117 48-71 (311)
200 4a74_A DNA repair and recombin 96.7 0.00082 2.8E-08 56.9 3.4 26 91-116 23-48 (231)
201 3u61_B DNA polymerase accessor 96.7 0.002 6.7E-08 58.0 6.0 32 93-124 48-79 (324)
202 2qby_A CDC6 homolog 1, cell di 96.7 0.001 3.4E-08 60.4 4.0 33 91-123 43-81 (386)
203 1tue_A Replication protein E1; 96.7 0.00094 3.2E-08 57.9 3.5 30 93-122 58-87 (212)
204 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0013 4.3E-08 55.6 4.0 26 91-116 21-46 (235)
205 2dhr_A FTSH; AAA+ protein, hex 96.6 0.0013 4.5E-08 63.9 4.4 30 94-123 65-94 (499)
206 2i3b_A HCR-ntpase, human cance 96.6 0.0012 4E-08 55.9 3.6 25 93-117 1-25 (189)
207 1ypw_A Transitional endoplasmi 96.6 0.00099 3.4E-08 68.3 3.6 35 91-125 236-270 (806)
208 3tif_A Uncharacterized ABC tra 96.6 0.001 3.4E-08 58.2 3.1 25 91-115 29-53 (235)
209 2z4s_A Chromosomal replication 96.6 0.002 6.9E-08 61.3 5.5 46 83-128 119-172 (440)
210 2pcj_A ABC transporter, lipopr 96.6 0.0011 3.7E-08 57.5 3.1 25 91-115 28-52 (224)
211 2v9p_A Replication protein E1; 96.6 0.0014 4.9E-08 59.7 4.0 27 91-117 124-150 (305)
212 2chq_A Replication factor C sm 96.6 0.0033 1.1E-07 55.7 6.3 24 94-117 39-62 (319)
213 1sxj_D Activator 1 41 kDa subu 96.5 0.0025 8.6E-08 57.5 5.4 25 94-118 59-83 (353)
214 1sxj_E Activator 1 40 kDa subu 96.5 0.0024 8.1E-08 57.9 5.2 26 92-117 35-60 (354)
215 2cbz_A Multidrug resistance-as 96.5 0.0013 4.4E-08 57.6 3.1 25 91-115 29-53 (237)
216 2cvh_A DNA repair and recombin 96.5 0.0016 5.6E-08 54.7 3.7 37 90-126 17-55 (220)
217 1iqp_A RFCS; clamp loader, ext 96.5 0.0039 1.3E-07 55.4 6.3 27 92-118 45-71 (327)
218 2orw_A Thymidine kinase; TMTK, 96.5 0.002 6.9E-08 54.0 4.1 26 92-117 2-27 (184)
219 2d2e_A SUFC protein; ABC-ATPas 96.4 0.0018 6.1E-08 57.1 3.7 26 91-116 27-52 (250)
220 4g1u_C Hemin import ATP-bindin 96.4 0.0015 5E-08 58.3 3.1 25 91-115 35-59 (266)
221 3gfo_A Cobalt import ATP-bindi 96.4 0.0015 5.1E-08 58.6 3.1 26 91-116 32-57 (275)
222 3tqf_A HPR(Ser) kinase; transf 96.4 0.0021 7.4E-08 54.2 3.9 37 91-128 14-50 (181)
223 2eyu_A Twitching motility prot 96.4 0.0019 6.6E-08 57.3 3.8 28 90-117 22-49 (261)
224 2ff7_A Alpha-hemolysin translo 96.4 0.0015 5.3E-08 57.4 3.1 26 91-116 33-58 (247)
225 1ji0_A ABC transporter; ATP bi 96.4 0.0016 5.4E-08 57.0 3.1 26 91-116 30-55 (240)
226 1b0u_A Histidine permease; ABC 96.4 0.0015 5.3E-08 57.9 3.1 27 91-117 30-56 (262)
227 1g6h_A High-affinity branched- 96.4 0.0016 5.4E-08 57.6 3.1 26 91-116 31-56 (257)
228 2pze_A Cystic fibrosis transme 96.4 0.0017 5.7E-08 56.5 3.1 27 91-117 32-58 (229)
229 1n0w_A DNA repair protein RAD5 96.4 0.0021 7.1E-08 54.9 3.7 27 90-116 21-47 (243)
230 1mv5_A LMRA, multidrug resista 96.4 0.0016 5.3E-08 57.1 2.9 26 91-116 26-51 (243)
231 3cf2_A TER ATPase, transitiona 96.4 0.0017 5.7E-08 66.7 3.5 42 92-133 510-553 (806)
232 1sgw_A Putative ABC transporte 96.4 0.0016 5.3E-08 56.3 2.8 26 91-116 33-58 (214)
233 3b85_A Phosphate starvation-in 96.4 0.0017 5.8E-08 55.8 3.0 26 91-116 20-45 (208)
234 1rj9_A FTSY, signal recognitio 96.4 0.0023 7.8E-08 58.2 4.0 26 92-117 101-126 (304)
235 2zu0_C Probable ATP-dependent 96.4 0.0021 7.1E-08 57.3 3.7 26 91-116 44-69 (267)
236 2olj_A Amino acid ABC transpor 96.3 0.0018 6E-08 57.8 3.1 27 91-117 48-74 (263)
237 2ixe_A Antigen peptide transpo 96.3 0.0018 6.1E-08 57.9 3.1 27 91-117 43-69 (271)
238 2ghi_A Transport protein; mult 96.3 0.0018 6.2E-08 57.4 3.1 26 91-116 44-69 (260)
239 3b9q_A Chloroplast SRP recepto 96.3 0.0024 8.1E-08 58.0 3.8 26 92-117 99-124 (302)
240 1sxj_C Activator 1 40 kDa subu 96.3 0.0039 1.3E-07 56.7 5.2 23 96-118 49-71 (340)
241 1vpl_A ABC transporter, ATP-bi 96.3 0.002 6.7E-08 57.2 3.1 26 91-116 39-64 (256)
242 2qi9_C Vitamin B12 import ATP- 96.3 0.002 6.9E-08 56.9 3.1 26 91-116 24-49 (249)
243 1ypw_A Transitional endoplasmi 96.3 0.0013 4.6E-08 67.4 2.2 32 92-123 510-541 (806)
244 1qvr_A CLPB protein; coiled co 96.3 0.0042 1.4E-07 63.9 5.9 36 82-117 180-215 (854)
245 2yz2_A Putative ABC transporte 96.3 0.0021 7.2E-08 57.1 3.1 26 91-116 31-56 (266)
246 1sxj_B Activator 1 37 kDa subu 96.3 0.0056 1.9E-07 54.3 5.9 24 94-117 43-66 (323)
247 1cr0_A DNA primase/helicase; R 96.3 0.0028 9.7E-08 56.4 4.0 29 89-117 31-59 (296)
248 2ihy_A ABC transporter, ATP-bi 96.3 0.0021 7.2E-08 57.7 3.1 27 91-117 45-71 (279)
249 1r6b_X CLPA protein; AAA+, N-t 96.2 0.0069 2.4E-07 61.2 7.2 35 83-117 197-231 (758)
250 1xjc_A MOBB protein homolog; s 96.2 0.0031 1.1E-07 52.6 3.9 25 93-117 4-28 (169)
251 1ojl_A Transcriptional regulat 96.2 0.0036 1.2E-07 56.5 4.5 37 79-117 13-49 (304)
252 1g8p_A Magnesium-chelatase 38 96.2 0.0016 5.3E-08 58.9 2.0 25 94-118 46-70 (350)
253 2qen_A Walker-type ATPase; unk 96.2 0.0026 9E-08 56.9 3.5 34 93-126 31-64 (350)
254 3e70_C DPA, signal recognition 96.2 0.0028 9.7E-08 58.2 3.8 26 92-117 128-153 (328)
255 2nq2_C Hypothetical ABC transp 96.2 0.0024 8E-08 56.5 3.1 26 91-116 29-54 (253)
256 1vma_A Cell division protein F 96.1 0.0032 1.1E-07 57.3 3.8 35 92-126 103-142 (306)
257 2dr3_A UPF0273 protein PH0284; 96.1 0.0038 1.3E-07 53.3 4.0 35 91-125 21-60 (247)
258 2px0_A Flagellar biosynthesis 96.1 0.0036 1.2E-07 56.6 4.0 35 92-126 104-144 (296)
259 1jr3_A DNA polymerase III subu 96.1 0.0066 2.3E-07 55.1 5.8 27 93-119 38-64 (373)
260 1r6b_X CLPA protein; AAA+, N-t 96.1 0.0034 1.1E-07 63.5 4.0 28 95-122 490-517 (758)
261 3fvq_A Fe(3+) IONS import ATP- 96.1 0.0033 1.1E-07 58.6 3.6 25 91-115 28-52 (359)
262 1lw7_A Transcriptional regulat 96.1 0.003 1E-07 58.4 3.3 28 93-120 170-197 (365)
263 2yv5_A YJEQ protein; hydrolase 96.1 0.004 1.4E-07 56.3 4.1 31 84-114 156-186 (302)
264 2f1r_A Molybdopterin-guanine d 96.1 0.0021 7E-08 53.6 1.9 24 94-117 3-26 (171)
265 2onk_A Molybdate/tungstate ABC 96.1 0.0035 1.2E-07 54.9 3.5 23 94-116 25-47 (240)
266 1nlf_A Regulatory protein REPA 96.0 0.0043 1.5E-07 54.9 4.0 26 90-115 27-52 (279)
267 1e2k_A Thymidine kinase; trans 96.0 0.0015 5.2E-08 60.3 1.0 27 92-118 3-29 (331)
268 3nbx_X ATPase RAVA; AAA+ ATPas 96.0 0.0024 8.3E-08 62.1 2.5 28 91-118 39-66 (500)
269 2og2_A Putative signal recogni 96.0 0.0039 1.3E-07 58.1 3.7 26 92-117 156-181 (359)
270 3rlf_A Maltose/maltodextrin im 96.0 0.0039 1.3E-07 58.6 3.7 25 91-115 27-51 (381)
271 1z47_A CYSA, putative ABC-tran 96.0 0.004 1.4E-07 58.0 3.7 25 91-115 39-63 (355)
272 1of1_A Thymidine kinase; trans 96.0 0.002 6.7E-08 60.5 1.5 28 91-118 47-74 (376)
273 2yyz_A Sugar ABC transporter, 96.0 0.0041 1.4E-07 58.0 3.7 25 91-115 27-51 (359)
274 2bbs_A Cystic fibrosis transme 96.0 0.0035 1.2E-07 56.6 3.1 26 91-116 62-87 (290)
275 2it1_A 362AA long hypothetical 95.9 0.0042 1.4E-07 57.9 3.7 26 91-116 27-52 (362)
276 1c9k_A COBU, adenosylcobinamid 95.9 0.0034 1.2E-07 53.0 2.7 28 96-124 2-31 (180)
277 1np6_A Molybdopterin-guanine d 95.9 0.0051 1.7E-07 51.4 3.8 25 93-117 6-30 (174)
278 2pjz_A Hypothetical protein ST 95.9 0.0038 1.3E-07 55.6 3.0 24 93-116 30-53 (263)
279 1v43_A Sugar-binding transport 95.9 0.0045 1.5E-07 57.9 3.7 25 91-115 35-59 (372)
280 3nh6_A ATP-binding cassette SU 95.9 0.0026 9E-08 58.0 2.0 27 91-117 78-104 (306)
281 1g29_1 MALK, maltose transport 95.9 0.0047 1.6E-07 57.8 3.7 24 92-115 28-51 (372)
282 2gza_A Type IV secretion syste 95.9 0.0041 1.4E-07 57.7 3.2 27 91-117 173-199 (361)
283 3tui_C Methionine import ATP-b 95.9 0.0049 1.7E-07 57.6 3.7 26 91-116 52-77 (366)
284 1u0j_A DNA replication protein 95.8 0.0064 2.2E-07 54.4 4.2 27 93-119 104-130 (267)
285 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.004 1.4E-07 57.4 2.9 35 90-124 120-156 (331)
286 2ewv_A Twitching motility prot 95.8 0.0052 1.8E-07 57.3 3.7 27 91-117 134-160 (372)
287 2yhs_A FTSY, cell division pro 95.8 0.0052 1.8E-07 59.7 3.8 26 92-117 292-317 (503)
288 3d31_A Sulfate/molybdate ABC t 95.8 0.0036 1.2E-07 58.1 2.5 25 91-115 24-48 (348)
289 2fna_A Conserved hypothetical 95.8 0.012 4.1E-07 52.6 5.9 31 94-124 31-63 (357)
290 3gd7_A Fusion complex of cysti 95.8 0.0054 1.9E-07 57.8 3.6 25 91-115 45-69 (390)
291 2rcn_A Probable GTPase ENGC; Y 95.8 0.0058 2E-07 56.9 3.8 29 87-115 209-237 (358)
292 3kta_A Chromosome segregation 95.8 0.0079 2.7E-07 49.2 4.2 25 94-118 27-51 (182)
293 1u0l_A Probable GTPase ENGC; p 95.7 0.0049 1.7E-07 55.6 3.0 29 87-115 163-191 (301)
294 2npi_A Protein CLP1; CLP1-PCF1 95.7 0.0051 1.7E-07 59.1 3.3 26 91-116 136-161 (460)
295 2b8t_A Thymidine kinase; deoxy 95.7 0.0073 2.5E-07 52.5 3.8 27 91-117 10-36 (223)
296 1a5t_A Delta prime, HOLB; zinc 95.7 0.016 5.5E-07 52.7 6.4 28 93-120 24-51 (334)
297 1pzn_A RAD51, DNA repair and r 95.6 0.0074 2.5E-07 55.7 3.9 27 91-117 129-155 (349)
298 1oxx_K GLCV, glucose, ABC tran 95.6 0.0037 1.3E-07 58.1 1.8 25 91-115 29-53 (353)
299 3k1j_A LON protease, ATP-depen 95.6 0.0065 2.2E-07 60.0 3.7 28 92-119 59-86 (604)
300 2hf9_A Probable hydrogenase ni 95.6 0.013 4.6E-07 49.3 5.1 27 91-117 36-62 (226)
301 1p9r_A General secretion pathw 95.6 0.017 5.6E-07 54.9 6.2 28 91-118 165-192 (418)
302 2r2a_A Uncharacterized protein 95.6 0.0085 2.9E-07 51.1 3.8 24 93-116 5-28 (199)
303 3pxi_A Negative regulator of g 95.6 0.008 2.7E-07 60.9 4.2 23 95-117 523-545 (758)
304 3jvv_A Twitching mobility prot 95.6 0.0076 2.6E-07 56.0 3.7 26 92-117 122-147 (356)
305 2wsm_A Hydrogenase expression/ 95.5 0.013 4.5E-07 49.2 4.8 27 92-118 29-55 (221)
306 3tvt_A Disks large 1 tumor sup 95.5 0.029 1E-06 50.7 7.4 25 91-118 98-122 (292)
307 2qm8_A GTPase/ATPase; G protei 95.5 0.0088 3E-07 54.9 3.8 27 91-117 53-79 (337)
308 2zr9_A Protein RECA, recombina 95.5 0.01 3.5E-07 54.9 4.2 37 89-125 57-98 (349)
309 3sop_A Neuronal-specific septi 95.4 0.0077 2.6E-07 53.6 3.2 24 94-117 3-26 (270)
310 2gj8_A MNME, tRNA modification 95.4 0.0087 3E-07 48.7 3.3 25 92-116 3-27 (172)
311 1zu4_A FTSY; GTPase, signal re 95.4 0.0092 3.2E-07 54.5 3.8 35 92-126 104-143 (320)
312 1w5s_A Origin recognition comp 95.4 0.013 4.3E-07 53.9 4.8 27 91-117 48-76 (412)
313 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.0058 2E-07 56.0 2.3 26 92-117 170-195 (330)
314 2wji_A Ferrous iron transport 95.4 0.0085 2.9E-07 48.1 3.1 23 93-115 3-25 (165)
315 3kl4_A SRP54, signal recogniti 95.4 0.0081 2.8E-07 57.3 3.3 35 92-126 96-135 (433)
316 1oix_A RAS-related protein RAB 95.4 0.0098 3.3E-07 49.2 3.4 23 94-116 30-52 (191)
317 2ce2_X GTPase HRAS; signaling 95.4 0.0096 3.3E-07 46.7 3.2 24 93-116 3-26 (166)
318 3dm5_A SRP54, signal recogniti 95.4 0.0086 2.9E-07 57.3 3.4 35 93-127 100-139 (443)
319 1pui_A ENGB, probable GTP-bind 95.3 0.0053 1.8E-07 51.0 1.7 26 89-114 22-47 (210)
320 1kao_A RAP2A; GTP-binding prot 95.3 0.011 3.6E-07 46.6 3.2 25 92-116 2-26 (167)
321 1xx6_A Thymidine kinase; NESG, 95.3 0.013 4.4E-07 49.7 3.9 27 91-117 6-32 (191)
322 1ko7_A HPR kinase/phosphatase; 95.3 0.013 4.3E-07 53.7 4.1 37 91-128 142-178 (314)
323 2f9l_A RAB11B, member RAS onco 95.2 0.011 3.9E-07 48.9 3.5 23 94-116 6-28 (199)
324 1qvr_A CLPB protein; coiled co 95.2 0.015 5.2E-07 59.7 5.1 24 94-117 589-612 (854)
325 2wjg_A FEOB, ferrous iron tran 95.2 0.01 3.5E-07 48.2 3.1 25 91-115 5-29 (188)
326 1t9h_A YLOQ, probable GTPase E 95.2 0.0047 1.6E-07 56.3 1.1 29 86-114 166-194 (307)
327 2dyk_A GTP-binding protein; GT 95.2 0.012 4.1E-07 46.3 3.3 23 94-116 2-24 (161)
328 1yqt_A RNAse L inhibitor; ATP- 95.2 0.011 3.7E-07 57.9 3.7 26 91-116 45-70 (538)
329 1u94_A RECA protein, recombina 95.2 0.021 7E-07 53.0 5.4 35 90-124 60-99 (356)
330 1j8m_F SRP54, signal recogniti 95.2 0.011 3.7E-07 53.5 3.3 33 93-125 98-135 (297)
331 2z43_A DNA repair and recombin 95.2 0.012 4.2E-07 53.4 3.7 28 90-117 104-131 (324)
332 2zts_A Putative uncharacterize 95.1 0.013 4.5E-07 49.8 3.7 25 90-114 27-51 (251)
333 1ls1_A Signal recognition part 95.1 0.013 4.5E-07 52.8 3.7 34 92-125 97-135 (295)
334 3hr8_A Protein RECA; alpha and 95.1 0.013 4.5E-07 54.5 3.8 37 89-125 57-98 (356)
335 1u8z_A RAS-related protein RAL 95.1 0.013 4.4E-07 46.1 3.2 25 92-116 3-27 (168)
336 3b5x_A Lipid A export ATP-bind 95.1 0.011 3.9E-07 58.0 3.5 27 91-117 367-393 (582)
337 2obl_A ESCN; ATPase, hydrolase 95.0 0.02 6.9E-07 52.9 4.8 35 84-118 62-96 (347)
338 3lda_A DNA repair protein RAD5 95.0 0.013 4.6E-07 55.2 3.6 24 91-114 176-199 (400)
339 3b60_A Lipid A export ATP-bind 95.0 0.011 3.7E-07 58.2 3.1 27 91-117 367-393 (582)
340 1z2a_A RAS-related protein RAB 95.0 0.015 5.3E-07 45.8 3.5 23 93-115 5-27 (168)
341 3f9v_A Minichromosome maintena 95.0 0.0058 2E-07 60.5 1.1 28 95-122 329-356 (595)
342 3e1s_A Exodeoxyribonuclease V, 95.0 0.022 7.4E-07 56.2 5.0 27 91-117 202-228 (574)
343 2ged_A SR-beta, signal recogni 94.9 0.018 6.3E-07 46.9 3.9 26 91-116 46-71 (193)
344 1c1y_A RAS-related protein RAP 94.9 0.015 5.3E-07 45.8 3.2 23 93-115 3-25 (167)
345 3p32_A Probable GTPase RV1496/ 94.9 0.016 5.5E-07 53.3 3.8 34 92-125 78-116 (355)
346 2i1q_A DNA repair and recombin 94.9 0.014 4.7E-07 52.7 3.2 27 90-116 95-121 (322)
347 2www_A Methylmalonic aciduria 94.9 0.016 5.6E-07 53.3 3.8 26 92-117 73-98 (349)
348 2oap_1 GSPE-2, type II secreti 94.9 0.011 3.9E-07 57.4 2.9 26 92-117 259-284 (511)
349 2dpy_A FLII, flagellum-specifi 94.9 0.025 8.4E-07 54.0 5.1 35 84-118 148-182 (438)
350 2zej_A Dardarin, leucine-rich 94.9 0.013 4.5E-07 47.9 2.8 22 94-115 3-24 (184)
351 2lkc_A Translation initiation 94.9 0.019 6.5E-07 45.9 3.7 24 92-115 7-30 (178)
352 1yrb_A ATP(GTP)binding protein 94.8 0.021 7.2E-07 49.3 4.1 35 91-125 12-50 (262)
353 1nrj_B SR-beta, signal recogni 94.8 0.021 7.2E-07 47.7 3.9 26 92-117 11-36 (218)
354 3q72_A GTP-binding protein RAD 94.8 0.02 6.8E-07 45.3 3.5 21 94-114 3-23 (166)
355 3ozx_A RNAse L inhibitor; ATP 94.8 0.013 4.5E-07 57.3 2.9 26 91-116 23-48 (538)
356 1knx_A Probable HPR(Ser) kinas 94.7 0.015 5.2E-07 53.1 3.0 36 91-127 145-180 (312)
357 2p67_A LAO/AO transport system 94.7 0.019 6.5E-07 52.6 3.8 27 91-117 54-80 (341)
358 3ozx_A RNAse L inhibitor; ATP 94.7 0.015 5E-07 57.0 3.1 26 91-116 292-317 (538)
359 1tf7_A KAIC; homohexamer, hexa 94.7 0.017 5.9E-07 55.9 3.6 23 91-113 37-59 (525)
360 2yl4_A ATP-binding cassette SU 94.7 0.012 4E-07 58.1 2.4 27 91-117 368-394 (595)
361 1ek0_A Protein (GTP-binding pr 94.7 0.015 5.3E-07 45.8 2.7 23 93-115 3-25 (170)
362 1yqt_A RNAse L inhibitor; ATP- 94.7 0.018 6E-07 56.4 3.7 26 91-116 310-335 (538)
363 2erx_A GTP-binding protein DI- 94.7 0.017 5.9E-07 45.6 3.0 23 93-115 3-25 (172)
364 3j16_B RLI1P; ribosome recycli 94.7 0.018 6.1E-07 57.2 3.7 26 91-116 101-126 (608)
365 1m2o_B GTP-binding protein SAR 94.7 0.021 7.2E-07 47.0 3.6 25 91-115 21-45 (190)
366 2qag_B Septin-6, protein NEDD5 94.6 0.017 5.7E-07 55.1 3.2 25 91-115 38-64 (427)
367 1upt_A ARL1, ADP-ribosylation 94.6 0.023 7.8E-07 45.0 3.6 24 92-115 6-29 (171)
368 3con_A GTPase NRAS; structural 94.6 0.016 5.5E-07 47.1 2.7 26 91-116 19-44 (190)
369 2nzj_A GTP-binding protein REM 94.6 0.021 7E-07 45.5 3.3 22 94-115 5-26 (175)
370 3q85_A GTP-binding protein REM 94.6 0.021 7.1E-07 45.3 3.3 21 94-114 3-23 (169)
371 3qf4_B Uncharacterized ABC tra 94.6 0.013 4.6E-07 57.8 2.6 27 91-117 379-405 (598)
372 3bh0_A DNAB-like replicative h 94.6 0.026 8.9E-07 51.1 4.3 29 89-117 64-92 (315)
373 1f6b_A SAR1; gtpases, N-termin 94.6 0.025 8.5E-07 47.0 3.9 29 86-114 18-46 (198)
374 3k53_A Ferrous iron transport 94.6 0.021 7.1E-07 50.2 3.5 24 92-115 2-25 (271)
375 1z0j_A RAB-22, RAS-related pro 94.6 0.023 7.9E-07 44.9 3.5 24 93-116 6-29 (170)
376 1kjw_A Postsynaptic density pr 94.6 0.054 1.8E-06 48.9 6.3 25 91-118 103-127 (295)
377 1xp8_A RECA protein, recombina 94.5 0.026 8.9E-07 52.6 4.2 37 89-125 70-111 (366)
378 1g16_A RAS-related protein SEC 94.5 0.024 8.2E-07 44.8 3.5 22 94-115 4-25 (170)
379 1ky3_A GTP-binding protein YPT 94.5 0.024 8.2E-07 45.3 3.5 23 93-115 8-30 (182)
380 2fn4_A P23, RAS-related protei 94.5 0.023 7.8E-07 45.4 3.3 25 92-116 8-32 (181)
381 3bk7_A ABC transporter ATP-bin 94.5 0.018 6E-07 57.3 3.1 26 91-116 115-140 (607)
382 1wms_A RAB-9, RAB9, RAS-relate 94.5 0.024 8.3E-07 45.2 3.5 23 93-115 7-29 (177)
383 1z08_A RAS-related protein RAB 94.5 0.024 8.3E-07 44.8 3.5 23 94-116 7-29 (170)
384 1svi_A GTP-binding protein YSX 94.5 0.026 8.7E-07 46.0 3.7 24 92-115 22-45 (195)
385 3bk7_A ABC transporter ATP-bin 94.5 0.021 7.2E-07 56.7 3.7 26 91-116 380-405 (607)
386 1r8s_A ADP-ribosylation factor 94.4 0.028 9.6E-07 44.3 3.6 22 95-116 2-23 (164)
387 4a82_A Cystic fibrosis transme 94.4 0.012 4E-07 57.9 1.6 27 91-117 365-391 (578)
388 1v5w_A DMC1, meiotic recombina 94.4 0.022 7.7E-07 52.2 3.4 26 91-116 120-145 (343)
389 1r2q_A RAS-related protein RAB 94.4 0.027 9.3E-07 44.3 3.5 23 93-115 6-28 (170)
390 3tw8_B RAS-related protein RAB 94.4 0.024 8.1E-07 45.3 3.1 22 93-114 9-30 (181)
391 1nij_A Hypothetical protein YJ 94.4 0.02 6.7E-07 52.0 2.9 24 93-116 4-27 (318)
392 3bc1_A RAS-related protein RAB 94.4 0.027 9.3E-07 45.4 3.5 22 94-115 12-33 (195)
393 3pqc_A Probable GTP-binding pr 94.3 0.027 9.3E-07 45.6 3.4 25 92-116 22-46 (195)
394 3t1o_A Gliding protein MGLA; G 94.3 0.026 8.9E-07 45.7 3.3 25 93-117 14-38 (198)
395 3clv_A RAB5 protein, putative; 94.3 0.029 9.9E-07 45.4 3.5 24 93-116 7-30 (208)
396 2a9k_A RAS-related protein RAL 94.3 0.025 8.7E-07 45.4 3.1 26 91-116 16-41 (187)
397 4dsu_A GTPase KRAS, isoform 2B 94.3 0.029 9.9E-07 45.2 3.5 23 94-116 5-27 (189)
398 1z0f_A RAB14, member RAS oncog 94.3 0.03 1E-06 44.6 3.5 24 93-116 15-38 (179)
399 2hxs_A RAB-26, RAS-related pro 94.3 0.028 9.4E-07 44.9 3.3 24 92-115 5-28 (178)
400 2r6a_A DNAB helicase, replicat 94.2 0.03 1E-06 53.2 4.0 28 89-116 199-226 (454)
401 2cxx_A Probable GTP-binding pr 94.2 0.028 9.5E-07 45.4 3.3 22 94-115 2-23 (190)
402 3qf4_A ABC transporter, ATP-bi 94.2 0.016 5.4E-07 57.2 2.1 27 91-117 367-393 (587)
403 1tf7_A KAIC; homohexamer, hexa 94.2 0.03 1E-06 54.3 4.0 29 89-117 277-305 (525)
404 2y8e_A RAB-protein 6, GH09086P 94.2 0.029 9.8E-07 44.7 3.3 25 91-115 12-36 (179)
405 1moz_A ARL1, ADP-ribosylation 94.2 0.021 7.3E-07 45.9 2.5 23 92-114 17-39 (183)
406 3upu_A ATP-dependent DNA helic 94.2 0.028 9.5E-07 53.5 3.7 23 95-117 47-69 (459)
407 1m7b_A RND3/RHOE small GTP-bin 94.2 0.031 1.1E-06 45.4 3.5 24 93-116 7-30 (184)
408 3j16_B RLI1P; ribosome recycli 94.2 0.027 9.4E-07 55.9 3.6 25 92-116 377-401 (608)
409 2bme_A RAB4A, RAS-related prot 94.1 0.032 1.1E-06 45.0 3.5 22 94-115 11-32 (186)
410 2ffh_A Protein (FFH); SRP54, s 94.1 0.031 1.1E-06 53.1 3.8 35 92-126 97-136 (425)
411 2oil_A CATX-8, RAS-related pro 94.1 0.034 1.1E-06 45.4 3.5 23 93-115 25-47 (193)
412 1sky_E F1-ATPase, F1-ATP synth 94.1 0.043 1.5E-06 52.9 4.7 33 84-116 142-174 (473)
413 2g6b_A RAS-related protein RAB 94.1 0.035 1.2E-06 44.4 3.5 24 93-116 10-33 (180)
414 3kkq_A RAS-related protein M-R 94.0 0.032 1.1E-06 44.9 3.3 26 91-116 16-41 (183)
415 3lxx_A GTPase IMAP family memb 94.0 0.031 1E-06 47.9 3.3 24 92-115 28-51 (239)
416 1ksh_A ARF-like protein 2; sma 94.0 0.033 1.1E-06 45.1 3.3 24 92-115 17-40 (186)
417 3bwd_D RAC-like GTP-binding pr 94.0 0.042 1.4E-06 44.0 3.9 25 92-116 7-31 (182)
418 1mh1_A RAC1; GTP-binding, GTPa 94.0 0.036 1.2E-06 44.5 3.5 24 92-115 4-27 (186)
419 1fzq_A ADP-ribosylation factor 94.0 0.032 1.1E-06 45.4 3.2 24 92-115 15-38 (181)
420 2j9r_A Thymidine kinase; TK1, 94.0 0.039 1.3E-06 47.7 3.8 27 91-117 26-52 (214)
421 2efe_B Small GTP-binding prote 94.0 0.036 1.2E-06 44.3 3.5 23 93-115 12-34 (181)
422 2j37_W Signal recognition part 93.9 0.032 1.1E-06 54.2 3.6 34 93-126 101-139 (504)
423 2bov_A RAla, RAS-related prote 93.9 0.035 1.2E-06 45.6 3.3 26 91-116 12-37 (206)
424 2atv_A RERG, RAS-like estrogen 93.9 0.039 1.3E-06 45.3 3.6 25 92-116 27-51 (196)
425 2gf0_A GTP-binding protein DI- 93.9 0.039 1.3E-06 45.0 3.6 24 92-115 7-30 (199)
426 1tq4_A IIGP1, interferon-induc 93.9 0.033 1.1E-06 52.8 3.5 24 92-115 68-91 (413)
427 1f2t_A RAD50 ABC-ATPase; DNA d 93.9 0.04 1.4E-06 44.4 3.5 25 93-117 23-47 (149)
428 2r8r_A Sensor protein; KDPD, P 93.9 0.039 1.3E-06 48.2 3.7 33 94-126 7-44 (228)
429 3dz8_A RAS-related protein RAB 93.9 0.04 1.4E-06 45.0 3.6 24 93-116 23-46 (191)
430 1zj6_A ADP-ribosylation factor 93.8 0.039 1.3E-06 44.9 3.4 25 91-115 14-38 (187)
431 3t5g_A GTP-binding protein RHE 93.8 0.037 1.3E-06 44.5 3.3 23 93-115 6-28 (181)
432 3ihw_A Centg3; RAS, centaurin, 93.8 0.038 1.3E-06 45.3 3.3 25 91-115 18-42 (184)
433 3oes_A GTPase rhebl1; small GT 93.8 0.035 1.2E-06 45.8 3.1 24 92-115 23-46 (201)
434 3tkl_A RAS-related protein RAB 93.8 0.041 1.4E-06 44.7 3.5 22 94-115 17-38 (196)
435 2p5s_A RAS and EF-hand domain 93.7 0.042 1.4E-06 45.3 3.5 24 92-115 27-50 (199)
436 1vg8_A RAS-related protein RAB 93.7 0.042 1.4E-06 45.2 3.5 24 93-116 8-31 (207)
437 2fh5_B SR-beta, signal recogni 93.7 0.043 1.5E-06 45.6 3.6 25 92-116 6-30 (214)
438 2gf9_A RAS-related protein RAB 93.7 0.043 1.5E-06 44.7 3.5 22 94-115 23-44 (189)
439 2h17_A ADP-ribosylation factor 93.7 0.037 1.3E-06 44.8 3.1 25 91-115 19-43 (181)
440 3euj_A Chromosome partition pr 93.7 0.037 1.3E-06 53.5 3.5 24 94-117 30-53 (483)
441 2fg5_A RAB-22B, RAS-related pr 93.7 0.043 1.5E-06 45.0 3.4 24 93-116 23-46 (192)
442 2b6h_A ADP-ribosylation factor 93.7 0.04 1.4E-06 45.4 3.2 23 92-114 28-50 (192)
443 2xxa_A Signal recognition part 93.6 0.042 1.4E-06 52.3 3.8 34 93-126 100-139 (433)
444 2iw3_A Elongation factor 3A; a 93.6 0.038 1.3E-06 57.8 3.7 25 91-115 459-483 (986)
445 2xtp_A GTPase IMAP family memb 93.6 0.041 1.4E-06 47.6 3.4 25 91-115 20-44 (260)
446 1x3s_A RAS-related protein RAB 93.6 0.046 1.6E-06 44.3 3.5 25 92-116 14-38 (195)
447 1zbd_A Rabphilin-3A; G protein 93.6 0.042 1.5E-06 45.2 3.3 22 94-115 9-30 (203)
448 1zd9_A ADP-ribosylation factor 93.6 0.046 1.6E-06 44.6 3.5 23 93-115 22-44 (188)
449 1z06_A RAS-related protein RAB 93.6 0.046 1.6E-06 44.5 3.5 24 92-115 19-42 (189)
450 3c5c_A RAS-like protein 12; GD 93.6 0.047 1.6E-06 44.7 3.5 26 91-116 19-44 (187)
451 3ice_A Transcription terminati 93.6 0.066 2.3E-06 50.6 4.9 35 83-117 163-198 (422)
452 2q6t_A DNAB replication FORK h 93.6 0.052 1.8E-06 51.4 4.2 28 89-116 196-223 (444)
453 2iwr_A Centaurin gamma 1; ANK 93.5 0.034 1.2E-06 44.6 2.5 25 92-116 6-30 (178)
454 2a5j_A RAS-related protein RAB 93.5 0.048 1.7E-06 44.5 3.5 22 94-115 22-43 (191)
455 3reg_A RHO-like small GTPase; 93.5 0.048 1.7E-06 44.5 3.5 26 91-116 21-46 (194)
456 1w36_D RECD, exodeoxyribonucle 93.5 0.041 1.4E-06 54.5 3.5 27 91-117 162-188 (608)
457 3cph_A RAS-related protein SEC 93.5 0.049 1.7E-06 45.0 3.5 24 92-115 19-42 (213)
458 2q3h_A RAS homolog gene family 93.4 0.047 1.6E-06 44.8 3.3 25 91-115 18-42 (201)
459 4bas_A ADP-ribosylation factor 93.4 0.039 1.3E-06 45.0 2.8 24 91-114 15-38 (199)
460 4gzl_A RAS-related C3 botulinu 93.4 0.05 1.7E-06 45.2 3.5 25 91-115 28-52 (204)
461 2bcg_Y Protein YP2, GTP-bindin 93.4 0.049 1.7E-06 44.9 3.5 22 94-115 9-30 (206)
462 1gwn_A RHO-related GTP-binding 93.4 0.049 1.7E-06 45.6 3.5 24 93-116 28-51 (205)
463 2qnr_A Septin-2, protein NEDD5 93.4 0.04 1.4E-06 49.6 3.0 21 94-114 19-39 (301)
464 2ew1_A RAS-related protein RAB 93.4 0.051 1.8E-06 45.4 3.5 24 93-116 26-49 (201)
465 4ag6_A VIRB4 ATPase, type IV s 93.3 0.053 1.8E-06 50.2 3.8 27 91-117 33-59 (392)
466 3cbq_A GTP-binding protein REM 93.3 0.039 1.3E-06 45.7 2.6 22 93-114 23-44 (195)
467 2xkx_A Disks large homolog 4; 93.3 0.28 9.5E-06 49.5 9.4 24 91-117 529-552 (721)
468 4a1f_A DNAB helicase, replicat 93.3 0.063 2.1E-06 49.5 4.2 28 89-116 42-69 (338)
469 2h57_A ADP-ribosylation factor 93.3 0.04 1.4E-06 44.9 2.6 24 92-115 20-43 (190)
470 2o52_A RAS-related protein RAB 93.3 0.051 1.8E-06 44.9 3.3 22 93-114 25-46 (200)
471 2fv8_A H6, RHO-related GTP-bin 93.3 0.054 1.9E-06 45.0 3.4 23 93-115 25-47 (207)
472 3ug7_A Arsenical pump-driving 93.3 0.087 3E-06 48.4 5.1 34 93-126 26-64 (349)
473 1z6t_A APAF-1, apoptotic prote 93.2 0.047 1.6E-06 53.0 3.4 24 92-115 146-169 (591)
474 2il1_A RAB12; G-protein, GDP, 93.2 0.05 1.7E-06 44.6 3.1 22 93-114 26-47 (192)
475 2qu8_A Putative nucleolar GTP- 93.2 0.051 1.8E-06 46.0 3.2 24 92-115 28-51 (228)
476 1ni3_A YCHF GTPase, YCHF GTP-b 93.2 0.056 1.9E-06 50.8 3.7 25 91-115 18-42 (392)
477 2a5y_B CED-4; apoptosis; HET: 93.2 0.049 1.7E-06 52.9 3.4 24 92-115 151-174 (549)
478 2fu5_C RAS-related protein RAB 93.1 0.032 1.1E-06 45.0 1.8 22 94-115 9-30 (183)
479 2gco_A H9, RHO-related GTP-bin 93.1 0.059 2E-06 44.5 3.5 24 93-116 25-48 (201)
480 2x77_A ADP-ribosylation factor 93.1 0.043 1.5E-06 44.6 2.5 23 92-114 21-43 (189)
481 2atx_A Small GTP binding prote 93.0 0.063 2.2E-06 43.8 3.4 23 94-116 19-41 (194)
482 3szr_A Interferon-induced GTP- 93.0 0.042 1.4E-06 54.4 2.8 26 90-115 42-67 (608)
483 2f7s_A C25KG, RAS-related prot 93.0 0.059 2E-06 44.9 3.3 22 94-115 26-47 (217)
484 3lxw_A GTPase IMAP family memb 93.0 0.057 1.9E-06 46.9 3.3 24 92-115 20-43 (247)
485 2cjw_A GTP-binding protein GEM 93.0 0.061 2.1E-06 44.4 3.3 23 94-116 7-29 (192)
486 3iby_A Ferrous iron transport 93.0 0.059 2E-06 47.3 3.4 22 94-115 2-23 (256)
487 3end_A Light-independent proto 93.0 0.065 2.2E-06 47.7 3.7 35 91-125 39-78 (307)
488 2j1l_A RHO-related GTP-binding 93.0 0.059 2E-06 45.1 3.3 24 92-115 33-56 (214)
489 2hup_A RAS-related protein RAB 93.0 0.064 2.2E-06 44.4 3.4 23 93-115 29-51 (201)
490 2gk6_A Regulator of nonsense t 92.9 0.082 2.8E-06 52.4 4.7 26 92-117 194-219 (624)
491 3ux8_A Excinuclease ABC, A sub 92.8 0.036 1.2E-06 55.3 1.9 23 91-113 346-368 (670)
492 3bgw_A DNAB-like replicative h 92.8 0.077 2.6E-06 50.5 4.1 29 89-117 193-221 (444)
493 2j0v_A RAC-like GTP-binding pr 92.8 0.07 2.4E-06 44.2 3.5 23 93-115 9-31 (212)
494 3i8s_A Ferrous iron transport 92.8 0.069 2.4E-06 47.2 3.6 24 92-115 2-25 (274)
495 1ega_A Protein (GTP-binding pr 92.8 0.047 1.6E-06 49.0 2.5 25 91-115 6-30 (301)
496 3zq6_A Putative arsenical pump 92.8 0.078 2.7E-06 48.1 3.9 41 86-126 5-52 (324)
497 3llu_A RAS-related GTP-binding 92.7 0.07 2.4E-06 43.9 3.4 25 91-115 18-42 (196)
498 4f4c_A Multidrug resistance pr 92.7 0.056 1.9E-06 58.3 3.4 27 91-117 442-468 (1321)
499 3kjh_A CO dehydrogenase/acetyl 92.7 0.049 1.7E-06 46.2 2.4 32 95-126 2-38 (254)
500 3cio_A ETK, tyrosine-protein k 92.6 0.14 4.8E-06 45.9 5.5 36 91-126 102-143 (299)
No 1
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.97 E-value=6e-30 Score=229.80 Aligned_cols=196 Identities=34% Similarity=0.569 Sum_probs=169.8
Q ss_pred hHHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh-CCCChHHHHHhhhhhhHHHHHHHH
Q 023493 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFRESDEKGYQQAETEV 156 (281)
Q Consensus 78 ~~~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~-g~~~i~eif~~~ge~~fr~~e~~v 156 (281)
..++....++.+.+++..|+|+|++||||||+++.||+.+|+.|+|+|.+++... | .++.++|...|+..|++.|.++
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g-~~i~~i~~~~ge~~fr~~e~~~ 111 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKG-TSVAEIFEHFGESVFREKETEA 111 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTT-SCHHHHHHHHCHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcC-ccHHHHHHHhCcHHHHHHHHHH
Confidence 4677778888888889999999999999999999999999999999999999988 6 8999999999999999999998
Q ss_pred HHHHhcC-CCeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-hc---CCCCCcC----------hHHHHHHHHH
Q 023493 157 LKQLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DH---SGFPESE----------VLPQLFALYK 221 (281)
Q Consensus 157 l~~l~~~-~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~---R~r~~~~----------~~~~l~~~~~ 221 (281)
+..+... .+.||++|+|++....++..++.+++|||++|++++.+| .+ +.||... ..+.+..+++
T Consensus 112 l~~l~~~~~~~Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~ 191 (250)
T 3nwj_A 112 LKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWD 191 (250)
T ss_dssp HHHHHHHCSSEEEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCcEEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHH
Confidence 9888766 689999999999999999888889999999999999999 43 2344211 2467889999
Q ss_pred HhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhhchhh
Q 023493 222 EMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKKKMM 274 (281)
Q Consensus 222 ~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~~~~~ 274 (281)
+|.+.|+.+|++|+++.++.++++.||++.+|++++++|++++..+++.+.+|
T Consensus 192 eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~~~~~ 244 (250)
T 3nwj_A 192 ARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKEDGM 244 (250)
T ss_dssp HHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999998888888899999999999999999999999998877544
No 2
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.4e-26 Score=197.65 Aligned_cols=164 Identities=21% Similarity=0.339 Sum_probs=144.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G 171 (281)
+++.|+|+|+|||||||+++.|++.+|+.++|+|++++...| .++.++|...|+..|+..+..++..+....++||++|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g-~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~g 102 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH-KTVGELFTERGEAGFRELERNMLHEVAEFENVVISTG 102 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC-CcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECC
Confidence 578999999999999999999999999999999999999888 8899999999999999999999999887778999999
Q ss_pred CceeechhhHHhcc-CCcEEEEEcCHHHHHhh-h-cC-CCCC---cC---hHHHHHHHHHHhhccccCCcEEEEcCcccc
Q 023493 172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM-D-HS-GFPE---SE---VLPQLFALYKEMRDGYATADVTVSLQKVAS 241 (281)
Q Consensus 172 ~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~-~R-~r~~---~~---~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~ 241 (281)
+|.+....++..+. .+.+|||++|++++.+| . .+ +||. .+ ..+.+..++.+|.+.|+.+|++|++
T Consensus 103 gg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt----- 177 (199)
T 3vaa_A 103 GGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQAQYIFNA----- 177 (199)
T ss_dssp TTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTTSSEEEEC-----
T ss_pred CcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhhCCEEEEC-----
Confidence 99998888887775 78999999999999999 5 33 4441 12 2567888999999999889999985
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 242 QLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 242 ~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
++.++++++++|++.+.+++
T Consensus 178 -------~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 178 -------DELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp -------CCCSSHHHHHHHHHHHHHHT
T ss_pred -------CCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999998875
No 3
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.94 E-value=4.7e-26 Score=192.39 Aligned_cols=164 Identities=21% Similarity=0.340 Sum_probs=140.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~ 172 (281)
+++|+|+|+|||||||+|+.||+.+|++++|+|.++++..| .++.++|...|+..|+..+.+++..+....+.||++|+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg 83 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG-ADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGG 83 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCC
Confidence 57899999999999999999999999999999999999888 88899999999999999999999998877789999999
Q ss_pred ceeechhhHHhcc-CCcEEEEEcCHHHHHhhh--c--CCCCCc---ChHHHHHHHHHHhhccccC-CcEEEEcCcccccc
Q 023493 173 GAVQSSANLALLR-HGISLWIDVPPGMVARMD--H--SGFPES---EVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQL 243 (281)
Q Consensus 173 g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R~--~--R~r~~~---~~~~~l~~~~~~r~~~y~~-ad~~Id~~~~a~~l 243 (281)
|++....++..++ .+++|||++|++++.+|. . +.+|.. +..+.+..++.+|.+.|+. +|++|++
T Consensus 84 ~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~Idt------- 156 (185)
T 3trf_A 84 GVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPT------- 156 (185)
T ss_dssp TGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEC-------
T ss_pred ceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEEEC-------
Confidence 9999888887776 679999999999999993 2 234521 2356788899999999875 9999986
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 244 GYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 244 ~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
++.++++++++|++.+..++.
T Consensus 157 -----~~~~~~e~~~~I~~~l~~~~~ 177 (185)
T 3trf_A 157 -----DDLNPRQLATQILVDIKQTYS 177 (185)
T ss_dssp -----TTCCHHHHHHHHHHHSCC---
T ss_pred -----CCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999998876654
No 4
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.91 E-value=7.9e-24 Score=177.77 Aligned_cols=155 Identities=20% Similarity=0.335 Sum_probs=130.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCc
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g 173 (281)
++|+|+|+|||||||+|+.||+.+|++++|+|.+++...| .++.++|...|+..|++.+..++..+....++||++|++
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~ 83 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN-QKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG 83 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT-SCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC-CCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence 4799999999999999999999999999999999988888 788888888888889888888888887667789998888
Q ss_pred eeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC---CCCCcChHHHHHHHHHHhhccccC-CcEEEEcCccccccccCC
Q 023493 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS---GFPESEVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLGYDD 247 (281)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R---~r~~~~~~~~l~~~~~~r~~~y~~-ad~~Id~~~~a~~l~~~d 247 (281)
++.. .+ ++ .+.+|||++|++++.+| ..| +++.....+.+...+.+|.+.|.. ++++||+
T Consensus 84 ~~~~-~~---l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y~~~~~~~Idt----------- 148 (175)
T 1via_A 84 FVNV-SN---LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNI----------- 148 (175)
T ss_dssp GGGS-TT---GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHHHCSEEEEC-----------
T ss_pred Eehh-hH---HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHhcCCEEEEC-----------
Confidence 8776 44 44 68999999999999999 433 555333256788889999888864 8999985
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 023493 248 LDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 248 ts~~speeva~~Il~~i~ 265 (281)
++.++++++++|++.+.
T Consensus 149 -~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 149 -ENKNIDELLSEIKKVIK 165 (175)
T ss_dssp -TTCCHHHHHHHHHHHHC
T ss_pred -CCCCHHHHHHHHHHHHH
Confidence 46899999999998774
No 5
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.91 E-value=1.3e-23 Score=177.45 Aligned_cols=160 Identities=21% Similarity=0.283 Sum_probs=132.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~ 172 (281)
+++|+|+|+|||||||+|+.|++.+|++++|+|.++++..| .++.++|...|+..|++.+..++..+.....+|+.+|+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~ 80 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-RSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGG 80 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-SCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCC
Confidence 35799999999999999999999999999999999998888 77888888888888998887778877666678888888
Q ss_pred ceeechhhHHhccCCcEEEEEcCHHHHHhh-hcC-CCC---CcChHHHHHHHHHHhhcccc-CCcEEEEcCccccccccC
Q 023493 173 GAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFP---ESEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGYD 246 (281)
Q Consensus 173 g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R-~r~---~~~~~~~l~~~~~~r~~~y~-~ad~~Id~~~~a~~l~~~ 246 (281)
++++.+.++..++.+.+|||++|++++.+| ..| +++ ..+..+.+..++.++.+.|. .++++||+
T Consensus 81 ~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt---------- 150 (184)
T 2iyv_A 81 GAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDT---------- 150 (184)
T ss_dssp TGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEEC----------
T ss_pred cEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEEEC----------
Confidence 888877777666677999999999999999 544 343 22345678888888888776 48999985
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 023493 247 DLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 247 dts~~speeva~~Il~~i~ 265 (281)
++.++++++++|++.+.
T Consensus 151 --~~~s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 151 --NRRNPGAVVRHILSRLQ 167 (184)
T ss_dssp --SSSCHHHHHHHHHTTSC
T ss_pred --CCCCHHHHHHHHHHHHh
Confidence 46899999999987763
No 6
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.91 E-value=1.2e-23 Score=175.24 Aligned_cols=153 Identities=22% Similarity=0.347 Sum_probs=124.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCe-EEEeC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL-VVCAG 171 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~-VIa~G 171 (281)
..+|+|+|+|||||||+|+.||+.||++++|+|.++++..| .++.+++..+|+..|++.+.+++..+....++ |+++|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g 85 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG-LSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTG 85 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 46899999999999999999999999999999999998888 88889998889999998888888888766677 89888
Q ss_pred CceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC---CCCC-cChHHHHHHHHHHhhccccC-CcEEEEcCccccccc
Q 023493 172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS---GFPE-SEVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLG 244 (281)
Q Consensus 172 ~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R---~r~~-~~~~~~l~~~~~~r~~~y~~-ad~~Id~~~~a~~l~ 244 (281)
+|++.. .+ |+ .+.+|||++|++++.+| ..| +++. .+ .+.+...+.++.+.|.. +|++|+++
T Consensus 86 ~g~~~~-~~---l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~-~~~~~~~~~~r~~~~~~~a~~~Id~~------- 153 (168)
T 1zuh_A 86 GGIVMH-EN---LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNN-LTQAKELFEKRQALYEKNASFIIDAR------- 153 (168)
T ss_dssp GGGGGC-GG---GTTSEEEEEEECCHHHHHHHHCC--------CCT-THHHHHHHHHHHHHHHHTCSEEEEGG-------
T ss_pred CCEech-hH---HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccC-HHHHHHHHHHHHHHHHHHCCEEEECC-------
Confidence 887766 43 44 67999999999999999 544 3442 12 45677888888887874 89999963
Q ss_pred cCCCCCCCHHHHHHHHHHHH
Q 023493 245 YDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 245 ~~dts~~speeva~~Il~~i 264 (281)
+ ++++++++|.+.+
T Consensus 154 -----~-~~e~~~~~I~~~l 167 (168)
T 1zuh_A 154 -----G-GLNNSLKQVLQFI 167 (168)
T ss_dssp -----G-CHHHHHHHHHHC-
T ss_pred -----C-CHHHHHHHHHHHh
Confidence 5 9999999998765
No 7
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.89 E-value=8.5e-23 Score=170.07 Aligned_cols=158 Identities=22% Similarity=0.349 Sum_probs=129.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCc
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g 173 (281)
+.|+|+|+|||||||+|+.|++.+|++++|+|.++++..| .++.+++...|+..|+..+..++..+. ...+||++|+|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~~ 80 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG-MTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGGG 80 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhC-CCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCCc
Confidence 5799999999999999999999999999999999988877 778888887788888888877787776 56788888888
Q ss_pred eeechhhHHhcc-CCcEEEEEcCHHHHHhh-h--cC--CCCCc---ChHHHHHHHHHHhhccccCCcEEEEcCccccccc
Q 023493 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-D--HS--GFPES---EVLPQLFALYKEMRDGYATADVTVSLQKVASQLG 244 (281)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~--~R--~r~~~---~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~ 244 (281)
.+..+.++..++ .+.+|||++|++++.+| . .| +++.. +....+..+|.++.+.|..+|++||+
T Consensus 81 ~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~-------- 152 (173)
T 1e6c_A 81 MVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVD-------- 152 (173)
T ss_dssp GGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEE--------
T ss_pred EEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEEC--------
Confidence 887777776665 68999999999999999 6 66 24422 23345777788877767668899986
Q ss_pred cCCCCCCCHHHHHHHHHHHHH
Q 023493 245 YDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 245 ~~dts~~speeva~~Il~~i~ 265 (281)
++.++++++++|.+.+.
T Consensus 153 ----~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 153 ----ATQPPAAIVCELMQTMR 169 (173)
T ss_dssp ----TTSCHHHHHHHHHHHTT
T ss_pred ----CCCCHHHHHHHHHHHhc
Confidence 46899999999988764
No 8
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.89 E-value=7.8e-23 Score=170.51 Aligned_cols=161 Identities=24% Similarity=0.375 Sum_probs=127.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~ 172 (281)
+..|+|+|++||||||+++.||+.+++.++|+|.++++..| ..+..+|...|+..|+..+..++..+....+.++++|+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~-~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~~ 82 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGG 82 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC-cCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECCC
Confidence 57899999999999999999999999999999999888777 78888888889989988877778887766778888877
Q ss_pred ceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC-CCC---CcCh-HHHHHHHHHHhhccccC-CcEEEEcCccccccc
Q 023493 173 GAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFP---ESEV-LPQLFALYKEMRDGYAT-ADVTVSLQKVASQLG 244 (281)
Q Consensus 173 g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R-~r~---~~~~-~~~l~~~~~~r~~~y~~-ad~~Id~~~~a~~l~ 244 (281)
|.+....++..++ .+++|||++|++++.+| ..| +++ .++. .+.+..++.+|.+.|.. +|++||+
T Consensus 83 ~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~id~-------- 154 (173)
T 1kag_A 83 GSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRT-------- 154 (173)
T ss_dssp TGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC----------
T ss_pred eEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhCCEEEEC--------
Confidence 7777666666666 68999999999999999 444 233 2334 67788889998888864 8999985
Q ss_pred cCCCCCCCHHHHHHHHHHHHHH
Q 023493 245 YDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 245 ~~dts~~speeva~~Il~~i~~ 266 (281)
++.++++++++|.+.+..
T Consensus 155 ----~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 155 ----DDQSAKVVANQIIHMLES 172 (173)
T ss_dssp -------CHHHHHHHHHHHHC-
T ss_pred ----CCCCHHHHHHHHHHHHHh
Confidence 468999999999988743
No 9
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.89 E-value=1.9e-22 Score=167.33 Aligned_cols=158 Identities=27% Similarity=0.447 Sum_probs=127.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeCCc
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G~g 173 (281)
+.|+|+|+|||||||+|+.|++.+|++++|+|.+.....| ..+.+++...|+..|+..+..++..+...+.+||++|+|
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~ 79 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG-LSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG 79 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence 4799999999999999999999999999999999988888 788888888888888877777888776566788887766
Q ss_pred eeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC-CCCCc-ChHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCC
Q 023493 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPES-EVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLD 249 (281)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R-~r~~~-~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts 249 (281)
.+..+.++..++ .+.+|||++|++++.+| ..| +++.. +..+.+...|.++.+.|..+|++| + +
T Consensus 80 ~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i-~------------~ 146 (168)
T 2pt5_A 80 LGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEERRKIYSKADIKV-K------------G 146 (168)
T ss_dssp HHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHHHTTSSEEE-E------------C
T ss_pred EeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHhCCEEE-C------------C
Confidence 666666666665 68999999999999999 444 34421 223456777777766666689888 5 3
Q ss_pred CCCHHHHHHHHHHHHH
Q 023493 250 AVTTEDMTLEVLKEIE 265 (281)
Q Consensus 250 ~~speeva~~Il~~i~ 265 (281)
+.++++++++|.+.+.
T Consensus 147 ~~~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 147 EKPPEEVVKEILLSLE 162 (168)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5899999999988775
No 10
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.82 E-value=8.6e-20 Score=158.17 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=107.6
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhhhhh--HH---------------
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKG--YQ--------------- 150 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g--~~~i~eif~~~ge~~--fr--------------- 150 (281)
.++.+.|.|.|++||||||+|+.||++||++|+| +++++.... +.+ .+.|...++.. |+
T Consensus 3 ~m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (201)
T 3fdi_A 3 AMKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYS-KEVLERFDEKPMNFAFIPVPAGGTTISLEQ 80 (201)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------C
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCC-HHHHHHHhhhchhHHHHHhccccccccccH
Confidence 3456789999999999999999999999999999 777765432 144 34555555543 23
Q ss_pred ---HHHHHHHHHHh--cCCCeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh--hcCCCCCcChHHHHHHHHHHh
Q 023493 151 ---QAETEVLKQLS--SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM--DHSGFPESEVLPQLFALYKEM 223 (281)
Q Consensus 151 ---~~e~~vl~~l~--~~~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R--~~R~r~~~~~~~~l~~~~~~r 223 (281)
..+.+++.+++ ..+++||...+|.++.+.+ +++++|||++|++++.+| ...+++.++....+.+...+|
T Consensus 81 ~~~~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~~~----~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R 156 (201)
T 3fdi_A 81 DIAIRQFNFIRKKANEEKESFVIVGRCAEEILSDN----PNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMR 156 (201)
T ss_dssp HHHHHHHHHHHHHHHTSCCCEEEESTTHHHHTTTC----TTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEECCcchhcCCC----CCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45677888888 6777888643333221221 246899999999999999 334666556667777777777
Q ss_pred hccccC-----------CcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 224 RDGYAT-----------ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 224 ~~~y~~-----------ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
.+.|.. +|++||+ +.++++++++.|++.++.
T Consensus 157 ~~~y~~~~~~~~~~~~~~dl~Idt------------~~l~~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 157 KVYHNFYCESKWGDSRTYDICIKI------------GKVDVDTATDMIIKYIDS 198 (201)
T ss_dssp HHHHHHHCSSCTTBGGGCSEEEEE------------SSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCcccCCEEEEC------------CCCCHHHHHHHHHHHHHH
Confidence 766542 6899985 589999999999988764
No 11
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.80 E-value=2.2e-19 Score=158.41 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=111.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHH--hCCCChHHHHHhhhhh-----------------------
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA--AGGESAAKAFRESDEK----------------------- 147 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~--~g~~~i~eif~~~ge~----------------------- 147 (281)
.+.|.|.|++||||||+|+.||++||++++|.|.+.+.. .| .+. +.|...++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g-~~~-~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSA-VGE-QFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcC-CCH-HHHHHHHhhccccHHHHHhccccccccccccc
Confidence 568999999999999999999999999999965543322 22 221 222222221
Q ss_pred --------hHHHHHHHHHHHHhcCCCeEEE-eCCceeec--hhhHHhccCCcEEEEEcCHHHHHhh--hcCCCCCcChHH
Q 023493 148 --------GYQQAETEVLKQLSSMGRLVVC-AGNGAVQS--SANLALLRHGISLWIDVPPGMVARM--DHSGFPESEVLP 214 (281)
Q Consensus 148 --------~fr~~e~~vl~~l~~~~~~VIa-~G~g~v~~--~~~~~~L~~~~vV~L~~s~e~l~~R--~~R~r~~~~~~~ 214 (281)
.....+.+++..++..+++||. +|+|+++. +.+ +++++|||++|++.+.+| ...+++.++..+
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~vl~~~~~~----~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a~~ 167 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQDEDI----ERLIRIFVYTDKVKKVQRVMEVDCIDEERAKR 167 (223)
T ss_dssp ------HHHHHHHHHHHHHHHHHHSCEEEESTTHHHHHHHCTTC----CEEEEEEEECCHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhcccccCC----CCeEEEEEECCHHHHHHHHHHhcCCCHHHHHH
Confidence 1123455677788777788887 66666652 221 246999999999999999 444677666777
Q ss_pred HHHHHHHHhhcccc-----------CCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 215 QLFALYKEMRDGYA-----------TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 215 ~l~~~~~~r~~~y~-----------~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
.+.+.+++|.+.|+ .+|++||+ +..+++++++.|++.++.
T Consensus 168 ~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT------------~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 168 RIKKIEKERKEYYKYFTGSEWHSMKNYDLPINT------------TKLTLEETAELIKAYIRL 218 (223)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEEC------------TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcccCeEEEEC------------CCCCHHHHHHHHHHHHHH
Confidence 88888889988886 58999985 689999999999998864
No 12
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.75 E-value=2.4e-17 Score=135.69 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=99.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCC-----C----hHHHHHhhhhhhHHHHHHHHHHHHhcCC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-----S----AAKAFRESDEKGYQQAETEVLKQLSSMG 164 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~-----~----i~eif~~~ge~~fr~~e~~vl~~l~~~~ 164 (281)
+.|+|+|+|||||||+|+.| +.+|++++++|+++++..... . ...++...|...+.......+.. ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 78 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT--SNH 78 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS--CCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh--cCC
Confidence 68999999999999999999 999999999999887754300 1 12222333444454433332211 334
Q ss_pred CeEEEeCCceeechhhHHhcc-----CCcEEEEEcCHHHHHhh-hcCCCCC-cChHHHHHHHHHH--h---hccccCCcE
Q 023493 165 RLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFALYKE--M---RDGYATADV 232 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~~L~-----~~~vV~L~~s~e~l~~R-~~R~r~~-~~~~~~l~~~~~~--r---~~~y~~ad~ 232 (281)
..||.+| + ....++..+. ...+|||++|++++.+| ..|+++. ....+.+.+.+.. + .+.+..+|+
T Consensus 79 ~~vi~dg--~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ad~ 155 (179)
T 3lw7_A 79 DLVVFDG--V-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADY 155 (179)
T ss_dssp SCEEEEC--C-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHTCSE
T ss_pred CeEEEeC--C-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHhCCE
Confidence 5566665 3 4444444443 34899999999999999 7777642 1222333332211 1 122336899
Q ss_pred EEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 233 ~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
+|+++ .++++++++|.+.+..++
T Consensus 156 vId~~-------------~~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 156 IITND-------------SNYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp EEECC-------------SCHHHHHHHHHHHHHHHC
T ss_pred EEECC-------------CCHHHHHHHHHHHHHHHh
Confidence 99862 499999999999988754
No 13
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.74 E-value=1.3e-16 Score=133.30 Aligned_cols=153 Identities=13% Similarity=0.129 Sum_probs=103.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHH-----H-HhCCCChHHHHHhhhhhhHHHHHHHHHHHHh-cC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----E-AAGGESAAKAFRESDEKGYQQAETEVLKQLS-SM 163 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~-----~-~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~-~~ 163 (281)
.+|..|+|+|++||||||+++.|++.+|+.++|.|.+.. . ..| ..+.+ ..+...++..+. ++..+. ..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~-~~~~~~~~~ 80 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EPLND---DDRKPWLQALND-AAFAMQRTN 80 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTT-CCCCH---HHHHHHHHHHHH-HHHHHHHHC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcC-cCCCc---cccccHHHHHHH-HHHHHHhcC
Confidence 467899999999999999999999999999999998742 2 234 33322 223344555443 333333 23
Q ss_pred CCeEEEeCCceeechhhHHhcc-C--C-cEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhcc-cc-CCcEEEEc
Q 023493 164 GRLVVCAGNGAVQSSANLALLR-H--G-ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDG-YA-TADVTVSL 236 (281)
Q Consensus 164 ~~~VIa~G~g~v~~~~~~~~L~-~--~-~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~-y~-~ad~~Id~ 236 (281)
..+|++++. ..+.++..++ . + .+|||++|++++.+| ..|+....+ ...+..++..+.+. |. .++++||+
T Consensus 81 ~~~vi~~~~---~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Id~ 156 (175)
T 1knq_A 81 KVSLIVCSA---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFK-TQMLVTQFETLQEPGADETDVLVVDI 156 (175)
T ss_dssp SEEEEECCC---CSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCC-HHHHHHHHHHCCCCCTTCTTEEEEEC
T ss_pred CcEEEEeCc---hHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCCc-hHHHHHHHHhhhCcccCCCCeEEEeC
Confidence 346666543 2345555554 2 3 799999999999999 666522212 34455566665555 55 47899985
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHH
Q 023493 237 QKVASQLGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 237 ~~~a~~l~~~dts~~speeva~~Il~~i~ 265 (281)
+.++++++++|.+.+.
T Consensus 157 -------------~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 157 -------------DQPLEGVVASTIEVIK 172 (175)
T ss_dssp -------------SSCHHHHHHHHHHHHH
T ss_pred -------------CCCHHHHHHHHHHHHh
Confidence 3799999999988774
No 14
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.73 E-value=3.4e-18 Score=145.00 Aligned_cols=156 Identities=16% Similarity=0.219 Sum_probs=93.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH-hCCceecCchHHHHHhCCCChHHHHHhhhhhhHH--HHHHHHHHHHhcCCCeE
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA-LRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ--QAETEVLKQLSSMGRLV 167 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~-l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr--~~e~~vl~~l~~~~~~V 167 (281)
.++++|+|+|+|||||||+|+.|++. +|++++|+|+++++........+.+ ...|. ..+..++..+.. +
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~l~~----~ 79 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTEL----DTHIIEEKDEDRLLDFMEP----I 79 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC----------CCCCCHHHHHHHHHHHHH----H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHHh----hhcccCCCCHHHHHHHHHH----H
Confidence 45789999999999999999999999 7999999999987742101111111 11121 112222222211 0
Q ss_pred EEeCCceeechhhHHhcc---CCcEEEEEcCHHHHHhh-hcCCCCCcChHHH-----HHHHHHHhhccccCCcEEEEcCc
Q 023493 168 VCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGFPESEVLPQ-----LFALYKEMRDGYATADVTVSLQK 238 (281)
Q Consensus 168 Ia~G~g~v~~~~~~~~L~---~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~-----l~~~~~~r~~~y~~ad~~Id~~~ 238 (281)
+.+++|+++...++.+++ .+.+|||++|.+++.+| ..|++........ +..++.++.+.|. +|++|+++
T Consensus 80 ~~~~g~~vi~~~~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~-~~~vi~~n- 157 (184)
T 1y63_A 80 MVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE-DDIVLVRE- 157 (184)
T ss_dssp HTSSSEEEEECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGEEEEE-
T ss_pred HhccCCEEEeCchHhhhhhccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhc-cCcEEECC-
Confidence 101223332222233333 57899999999999999 6666442111111 3444677778886 68888742
Q ss_pred cccccccCCCCCCCHHHH---HHHHHHHHHHH
Q 023493 239 VASQLGYDDLDAVTTEDM---TLEVLKEIEKL 267 (281)
Q Consensus 239 ~a~~l~~~dts~~speev---a~~Il~~i~~~ 267 (281)
+.+++++ +.+|++.+..+
T Consensus 158 -----------~~~~~~~~~~v~~i~~~l~~~ 178 (184)
T 1y63_A 158 -----------NDTLEQMAATVEEIRERVEVL 178 (184)
T ss_dssp -----------CSSHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHH
Confidence 6799999 55555555443
No 15
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.71 E-value=2.5e-16 Score=130.11 Aligned_cols=146 Identities=14% Similarity=0.274 Sum_probs=100.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeC--
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG-- 171 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G-- 171 (281)
+.|+|+|+|||||||+++.|++.+|++++|.|.+...... +..+|.. ...+.. +..|+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~---~~~~~~~-------------~~~l~~-~~~vi~dr~~ 64 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG---NEKLFEH-------------FNKLAD-EDNVIIDRFV 64 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC---HHHHHHH-------------HHHHTT-CCSEEEESCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH---HHHHHHH-------------HHHHHh-CCCeEEeeee
Confidence 5799999999999999999999999999999988765331 2223221 112222 23333321
Q ss_pred --------C---ceeechhhHHhc-----cCCcEEEEEcCHHHHHhh-hcCCCCCcC--hHHHHHHHHHHhhccccCCcE
Q 023493 172 --------N---GAVQSSANLALL-----RHGISLWIDVPPGMVARM-DHSGFPESE--VLPQLFALYKEMRDGYATADV 232 (281)
Q Consensus 172 --------~---g~v~~~~~~~~L-----~~~~vV~L~~s~e~l~~R-~~R~r~~~~--~~~~l~~~~~~r~~~y~~ad~ 232 (281)
. ........+..+ .++.+|||++|++++.+| ..|+++..+ ....+...|+++.+.|..+++
T Consensus 65 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (173)
T 3kb2_A 65 YSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTY 144 (173)
T ss_dssp HHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSSCEE
T ss_pred cchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhhcCCCEE
Confidence 0 011122233222 257899999999999999 555555332 445677788888888877888
Q ss_pred EEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 233 ~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
+||+ ++.++++++++|.+.++.+.
T Consensus 145 ~id~------------~~~~~~ev~~~I~~~~~~~~ 168 (173)
T 3kb2_A 145 SWDT------------GQWSSDEIAKDIIFLVELEH 168 (173)
T ss_dssp EEET------------TTSCHHHHHHHHHHHHHHGG
T ss_pred EEEC------------CCCCHHHHHHHHHHHHhCCC
Confidence 9985 46799999999999998754
No 16
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.71 E-value=7.4e-16 Score=132.04 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=106.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHH-----H-HhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----E-AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~-----~-~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~ 164 (281)
-+|..|+|+|++||||||+++.|++.+|+.++|.|.+.. . ..| ..+.+ ......+...+..+...+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~~~~~~~~g~ 102 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRG-IPLTD---EDRWPWLRSLAEWMDARADAGV 102 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTT-CCCCH---HHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcC-CCCCC---cccccHHHHHHHHHHHHHhcCC
Confidence 468899999999999999999999999999999998732 1 223 22211 1122334444444444444444
Q ss_pred CeEEEeCCceeechhhHHhcc----CCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhccccC-CcEEEEcCc
Q 023493 165 RLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYAT-ADVTVSLQK 238 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~~L~----~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~y~~-ad~~Id~~~ 238 (281)
..|++++ ......+..+. ...+|||++|++++.+| .+|+.... ..+.+..+++++.+.|.. ++++||+
T Consensus 103 ~viid~~---~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~-~~~~l~~~~~~~~~~~~~~~~~~Id~-- 176 (200)
T 4eun_A 103 STIITCS---ALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFM-PASLLQSQLATLEALEPDESGIVLDL-- 176 (200)
T ss_dssp CEEEEEC---CCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSS-CGGGHHHHHHHCCCCCTTSCEEEEET--
T ss_pred CEEEEch---hhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCC-CHHHHHHHHHHhCCCCCCCCeEEEEC--
Confidence 5677654 23344555444 35789999999999999 65643221 235677888888888874 8899985
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 239 VASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 239 ~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
+.++++++++|.+.+..
T Consensus 177 -----------~~~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 177 -----------RQPPEQLIERALTWLDI 193 (200)
T ss_dssp -----------TSCHHHHHHHHHHHHCC
T ss_pred -----------CCCHHHHHHHHHHHHHh
Confidence 35999999999988753
No 17
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.71 E-value=3.4e-17 Score=138.42 Aligned_cols=160 Identities=13% Similarity=0.189 Sum_probs=100.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh-CC----CChHHHHHhhhhhhHHHHHHHHHH----HHhc
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVLK----QLSS 162 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~-g~----~~i~eif~~~ge~~fr~~e~~vl~----~l~~ 162 (281)
+++.|+|+|+|||||||+|+.|++.+|++++|+|++++... ++ ..+.+++. .|+..+.+.....+. ....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhccc
Confidence 57899999999999999999999999999999999887632 11 23444444 344434433222222 2222
Q ss_pred CCCeEEEeCCceeechhhHH----hcc-CCcEEEEEcCHHHHHhh-hcCC----CCCc---ChHHHHHHHHHHhhcc---
Q 023493 163 MGRLVVCAGNGAVQSSANLA----LLR-HGISLWIDVPPGMVARM-DHSG----FPES---EVLPQLFALYKEMRDG--- 226 (281)
Q Consensus 163 ~~~~VIa~G~g~v~~~~~~~----~L~-~~~vV~L~~s~e~l~~R-~~R~----r~~~---~~~~~l~~~~~~r~~~--- 226 (281)
.+..||..| .+....... .+. .+.+|||++|++++.+| ..|+ +... .....+...+.++.+.
T Consensus 87 ~~~~vi~d~--~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 164 (196)
T 2c95_A 87 TSKGFLIDG--YPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAF 164 (196)
T ss_dssp TCSCEEEES--CCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHH
T ss_pred cCCcEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443 222222221 123 67999999999999999 4442 2211 1233455556665553
Q ss_pred ccCCcE--EEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 227 YATADV--TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 227 y~~ad~--~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
|..++. +||+ +.++++++++|.+.+.+.
T Consensus 165 ~~~~~~~~~Id~-------------~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 165 YEKRGIVRKVNA-------------EGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHHTCEEEEEC-------------CSCHHHHHHHHHHHHHHH
T ss_pred HHhcCcEEEEEC-------------CCCHHHHHHHHHHHHHHh
Confidence 444453 5663 489999999999988754
No 18
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.70 E-value=1.1e-16 Score=134.55 Aligned_cols=158 Identities=13% Similarity=0.166 Sum_probs=99.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh-CCC----ChHHHHHhhhhhhHHHHHHHHHHHHhc--CCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGE----SAAKAFRESDEKGYQQAETEVLKQLSS--MGR 165 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~-g~~----~i~eif~~~ge~~fr~~e~~vl~~l~~--~~~ 165 (281)
++.|+|+|+|||||||+|+.|++.+|++++|+|+++++.. ++. .+.++|.. |...+.+.....+..... .+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~ 84 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN-GEIVPSIVTVKLLKNAIDANQGK 84 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTSTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999999877653 212 23344432 333344444444444332 233
Q ss_pred eEEEeCCceeechhhHHhc----c----CCcEEEEEcCHHHHHhh-hcCC----CCCc---ChHHHHHHHHHHhhcc---
Q 023493 166 LVVCAGNGAVQSSANLALL----R----HGISLWIDVPPGMVARM-DHSG----FPES---EVLPQLFALYKEMRDG--- 226 (281)
Q Consensus 166 ~VIa~G~g~v~~~~~~~~L----~----~~~vV~L~~s~e~l~~R-~~R~----r~~~---~~~~~l~~~~~~r~~~--- 226 (281)
.||..| .+....++..+ . .+++|||++|++++.+| ..|+ ++.. .....+..+++++.+.
T Consensus 85 ~vi~d~--~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~ 162 (194)
T 1qf9_A 85 NFLVDG--FPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDH 162 (194)
T ss_dssp CEEEET--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHH
T ss_pred CEEEeC--cCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHH
Confidence 444443 33332222222 2 46899999999999999 4442 3321 1223355555555443
Q ss_pred ccCCc--EEEEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 227 YATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 227 y~~ad--~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
|..+| ++||+ +.++++++++|.+.+.+
T Consensus 163 ~~~~~~~~~id~-------------~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 163 YNKFDKVKIIPA-------------NRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHTTCEEEEEC-------------SSCHHHHHHHHHHHHHH
T ss_pred HHhCCCEEEEEC-------------CCCHHHHHHHHHHHHHH
Confidence 33467 67774 48999999999988864
No 19
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.70 E-value=7e-17 Score=138.10 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=98.9
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHH-hCC----CChHHHHHhhhhhhHHHHHHHHHHHHhc--
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSS-- 162 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~-~g~----~~i~eif~~~ge~~fr~~e~~vl~~l~~-- 162 (281)
...++.|+|+|+|||||||+|+.|++.+|++++++|+++++. .++ ..+.+++.. |+..+++....++.....
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~ 95 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDA-GDLVPSDLTNELVDDRLNNP 95 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHc-CCcccHHHHHHHHHHHHhcc
Confidence 356789999999999999999999999999999999988763 221 223334432 444455544444444322
Q ss_pred -CCCeEEEeCCceeechhh---H-Hhcc-----CCcEEEEEcCHHHHHhh-hcCCCCCcCh---HHHHHHHHHHhhc---
Q 023493 163 -MGRLVVCAGNGAVQSSAN---L-ALLR-----HGISLWIDVPPGMVARM-DHSGFPESEV---LPQLFALYKEMRD--- 225 (281)
Q Consensus 163 -~~~~VIa~G~g~v~~~~~---~-~~L~-----~~~vV~L~~s~e~l~~R-~~R~r~~~~~---~~~l~~~~~~r~~--- 225 (281)
.+..+|..|. ...... + .++. .+.+|||++|++++.+| ..|+++.... ...+...+..+.+
T Consensus 96 ~~~~~vIldg~--~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~ 173 (201)
T 2cdn_A 96 DAANGFILDGY--PRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLE 173 (201)
T ss_dssp GGTTCEEEESC--CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHH
T ss_pred cCCCeEEEECC--CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 1222333321 111111 1 1232 46899999999999999 6666653221 1233334444333
Q ss_pred cccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 226 GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 226 ~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
.|..++++||+ +.++++++.+|.+.+
T Consensus 174 ~~~~~~~~Id~-------------~~~~eev~~~I~~~l 199 (201)
T 2cdn_A 174 YYRDQLKTVDA-------------VGTMDEVFARALRAL 199 (201)
T ss_dssp HTTTTEEEEEC-------------CSCHHHHHHHHHHHT
T ss_pred HhcCcEEEEeC-------------CCCHHHHHHHHHHHH
Confidence 33346778885 479999999998775
No 20
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.70 E-value=8.1e-17 Score=134.46 Aligned_cols=154 Identities=10% Similarity=0.026 Sum_probs=94.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceec--CchHHHHHhCC-------CChHHHHHhhhhhhHHHHHHHH---HHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAGG-------ESAAKAFRESDEKGYQQAETEV---LKQ 159 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d--~D~li~~~~g~-------~~i~eif~~~ge~~fr~~e~~v---l~~ 159 (281)
.++.|+|+|+|||||||+|+.|++.++..+++ .|.+++...+. .++.+.+...++..|+..+... +..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence 46889999999999999999999999988775 78877654331 0111111112344555554332 444
Q ss_pred HhcCCCeEEEeCCceee-----chhhHHhcc-CC-cEEEEEcCHHHHHhh-hcCC-CCCcChHHHHHHHHHHhhccccCC
Q 023493 160 LSSMGRLVVCAGNGAVQ-----SSANLALLR-HG-ISLWIDVPPGMVARM-DHSG-FPESEVLPQLFALYKEMRDGYATA 230 (281)
Q Consensus 160 l~~~~~~VIa~G~g~v~-----~~~~~~~L~-~~-~vV~L~~s~e~l~~R-~~R~-r~~~~~~~~l~~~~~~r~~~y~~a 230 (281)
+...+..||.++ .+. ...++..++ .+ .+|||++|++++.+| ..|+ ++. .. ....++.. ..|..+
T Consensus 82 ~~~~g~~vi~~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~~~~-~~---~~~~~~~~-~~~~~~ 154 (178)
T 1qhx_A 82 MARAGARIIIDD--VFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVA-GM---AAKQAYVV-HEGVEY 154 (178)
T ss_dssp HHHTTCEEEEEE--CCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSCT-TH---HHHHTTGG-GTTCCC
T ss_pred HHhcCCeEEEEe--ccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCCccc-ch---hhhhchhh-ccCCCC
Confidence 444444444433 221 123344454 34 679999999999999 5554 332 11 11222221 123458
Q ss_pred cEEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 231 DVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 231 d~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
|++||+ ++.+|++++++|++.+
T Consensus 155 d~~idt------------~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 155 DVEVDT------------THKESIECAWAIAAHV 176 (178)
T ss_dssp SEEEET------------TSSCHHHHHHHHHTTC
T ss_pred cEEEEC------------CCCCHHHHHHHHHHHh
Confidence 999985 5789999999998754
No 21
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.69 E-value=8.2e-17 Score=135.20 Aligned_cols=150 Identities=21% Similarity=0.257 Sum_probs=98.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHH--HH---HHHHHHhcCCC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQA--ET---EVLKQLSSMGR 165 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~--e~---~vl~~l~~~~~ 165 (281)
.++.+|+|+|+|||||||+++.|++.+|+.++++|+++++... +...++..++.. +. ..+......+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQL-------YDGYDEEYDCPILDEDRVVDELDNQMREGG 81 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTC-------EEEEETTTTEEEECHHHHHHHHHHHHHHCC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcch-------hhhhhhhhcCccCChHHHHHHHHHHHhcCC
Confidence 3567899999999999999999999999999999999876521 111222211100 11 11222222234
Q ss_pred eEEEeCCceeechhhHHhcc---CCcEEEEEcCHHHHHhh-hcCCCCCcC-----hHHHHHHHHHHhhccccCCcEEEEc
Q 023493 166 LVVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGFPESE-----VLPQLFALYKEMRDGYATADVTVSL 236 (281)
Q Consensus 166 ~VIa~G~g~v~~~~~~~~L~---~~~vV~L~~s~e~l~~R-~~R~r~~~~-----~~~~l~~~~~~r~~~y~~ad~~Id~ 236 (281)
.|+.. .+...++ .+.+|||++|++++.+| ..|++.... ..+.+..++.++.+.|. ++++|++
T Consensus 82 ~vv~~--------~~~~~~~~~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~i~~ 152 (180)
T 3iij_A 82 VIVDY--------HGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK-EEIVHQL 152 (180)
T ss_dssp EEEEC--------SCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGEEEE
T ss_pred EEEEe--------chhhhcchhcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEc
Confidence 44432 1222232 57999999999999999 666654211 12346677888888887 6888885
Q ss_pred CccccccccCCCCCCCHHHH---HHHHHHHHHHHH
Q 023493 237 QKVASQLGYDDLDAVTTEDM---TLEVLKEIEKLT 268 (281)
Q Consensus 237 ~~~a~~l~~~dts~~speev---a~~Il~~i~~~~ 268 (281)
++.+++++ +.+|++++.++.
T Consensus 153 ------------~~~~~~ev~~~v~~i~~~l~~~~ 175 (180)
T 3iij_A 153 ------------PSNKPEELENNVDQILKWIEQWI 175 (180)
T ss_dssp ------------ECSSHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 47899999 666776666654
No 22
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.69 E-value=7.6e-17 Score=135.57 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=99.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHH-hCC----CChHHHHHhhhhhhHHHHHHHHHHHHhcCCCe
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~-~g~----~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (281)
+|+.|+|+|+|||||||+++.|++.+|++++|+|++++.. .++ ..+.+++.. |+..+.......+...... +
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l~~-~- 79 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREELAE-R- 79 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHCCS-E-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHhcC-C-
Confidence 5788999999999999999999999999999999988764 221 234445543 4444555555555554433 2
Q ss_pred EEEeCCceeechhhH----Hhcc-----CCcEEEEEcCHHHHHhh-hcC----CCCCcC---hHHHHHHHHHHhhc---c
Q 023493 167 VVCAGNGAVQSSANL----ALLR-----HGISLWIDVPPGMVARM-DHS----GFPESE---VLPQLFALYKEMRD---G 226 (281)
Q Consensus 167 VIa~G~g~v~~~~~~----~~L~-----~~~vV~L~~s~e~l~~R-~~R----~r~~~~---~~~~l~~~~~~r~~---~ 226 (281)
+|..| .+....+. .++. .+.+|||++|++++.+| ..| +++... ....+...+..+.+ .
T Consensus 80 ~i~dg--~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~ 157 (186)
T 3cm0_A 80 VIFDG--FPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGY 157 (186)
T ss_dssp EEEES--CCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 33222221 1222 46899999999999999 444 454322 22334444444333 3
Q ss_pred ccCC--cEEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 227 YATA--DVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 227 y~~a--d~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
|+.+ +++||+ +.++++++++|.+.+
T Consensus 158 ~~~~~~~~~id~-------------~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 158 YEARGVLKRVDG-------------LGTPDEVYARIRAAL 184 (186)
T ss_dssp HHHTTCEEEEEC-------------CSCHHHHHHHHHHHH
T ss_pred HHhcCcEEEEEC-------------CCCHHHHHHHHHHHh
Confidence 3334 467774 479999999998776
No 23
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.69 E-value=4.1e-16 Score=135.44 Aligned_cols=165 Identities=14% Similarity=0.143 Sum_probs=104.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHH------hCCCChHHHHHhhhhhh----HHH-HHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKG----YQQ-AETEVLKQL 160 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~------~g~~~i~eif~~~ge~~----fr~-~e~~vl~~l 160 (281)
+++.|+|+|+|||||||+|+.||+.+|+.++|+|++++.. .| ..+.+++.. |+.. +.. .+..+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g-~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~ 81 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENG-KRAKEFMEK-GQLVPDEIVVNMVKERLRQPD 81 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHH-HHHHHHHHT-TCCCCHHHHHHHHHHHHHSHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchh-HHHHHHHHc-CCcCCHHHHHHHHHHHHhhcc
Confidence 4678999999999999999999999999999999988762 22 334444432 3221 222 122222111
Q ss_pred hcCCCeEEEeCCceeechhhHHhcc-----CCcEEEEEcCHHHHHhh-hcCC------C---------------------
Q 023493 161 SSMGRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSG------F--------------------- 207 (281)
Q Consensus 161 ~~~~~~VIa~G~g~v~~~~~~~~L~-----~~~vV~L~~s~e~l~~R-~~R~------r--------------------- 207 (281)
.....+|+ .| ++....+...+. .+++|||++|++++.+| ..|+ +
T Consensus 82 ~~~~~~vi-dg--~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r 158 (222)
T 1zak_A 82 AQENGWLL-DG--YPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQR 158 (222)
T ss_dssp HHHTCEEE-ES--CCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCC
T ss_pred ccCCcEEE-EC--CCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccC
Confidence 22345666 44 333323333332 47999999999999999 4331 1
Q ss_pred C--CcC-hHHHHHHHHHHhhc---cccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhhchhh
Q 023493 208 P--ESE-VLPQLFALYKEMRD---GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKKKMM 274 (281)
Q Consensus 208 ~--~~~-~~~~l~~~~~~r~~---~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~~~~~ 274 (281)
. ..+ ....+...+.++.+ .|....++||. +.++++++++|.+.+...+..+.-+
T Consensus 159 ~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~-------------~~~~~ev~~~I~~~l~~~l~~~~~~ 218 (222)
T 1zak_A 159 FDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQG-------------DATVDAVFAKIDELLGSILEKKNEM 218 (222)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEEC-------------SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEEC-------------CCCHHHHHHHHHHHHHhhccccccc
Confidence 0 011 22234455565555 45444567774 5899999999999999887665433
No 24
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=134.09 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=99.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh--C---CCChHHHHHhhhhhhHHHHHHHHHH----HHhc
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--G---GESAAKAFRESDEKGYQQAETEVLK----QLSS 162 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~--g---~~~i~eif~~~ge~~fr~~e~~vl~----~l~~ 162 (281)
.++.|+|+|+|||||||+|+.|++.+|+.++|+|+++++.. + +..+.+++.. |+..+.+.....+. ....
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~i~~~~~ 89 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMER-GDLVPSGIVLELLKEAMVASLG 89 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccc
Confidence 35789999999999999999999999999999999886644 1 0233444432 43333332222222 2222
Q ss_pred CCCeEEEeCCceeechhhHHh----c-cCCcEEEEEcCHHHHHhh-hcCCCCC---c----ChHHHHHHHHHHhhc---c
Q 023493 163 MGRLVVCAGNGAVQSSANLAL----L-RHGISLWIDVPPGMVARM-DHSGFPE---S----EVLPQLFALYKEMRD---G 226 (281)
Q Consensus 163 ~~~~VIa~G~g~v~~~~~~~~----L-~~~~vV~L~~s~e~l~~R-~~R~r~~---~----~~~~~l~~~~~~r~~---~ 226 (281)
.+..||..| ++....+... + ..+++|||++|++++.+| ..|+.+. + +....+...+..+.+ .
T Consensus 90 ~~~~vi~dg--~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 167 (199)
T 2bwj_A 90 DTRGFLIDG--YPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAY 167 (199)
T ss_dssp SCSCEEEET--CCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344555543 3333233222 2 257999999999999999 6565421 1 112233334555544 4
Q ss_pred ccC-Cc-EEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 227 YAT-AD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 227 y~~-ad-~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
|.. ++ ++||+ +.++++++++|.+.+.++
T Consensus 168 ~~~~~~~~~id~-------------~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 168 YETKTQLHKINA-------------EGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHSEEEEEET-------------TSCHHHHHHHHHHHHHHH
T ss_pred HHhcCCEEEEEC-------------CCCHHHHHHHHHHHHHHh
Confidence 543 34 66774 589999999999988754
No 25
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.66 E-value=3.9e-17 Score=141.14 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=95.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHH------hC-CCChHHH-------HH----------hhhhh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AG-GESAAKA-------FR----------ESDEK 147 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~------~g-~~~i~ei-------f~----------~~ge~ 147 (281)
+++.|+|+|++||||||+++.|++.+|++++|+|.+++.. .| ...+.++ |. ..|+.
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~ 81 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNED 81 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCcc
Confidence 4678999999999999999999999999999999998652 12 1233333 21 12332
Q ss_pred hHHHHHHH----HH----------HHHhcCCCeEEEeCCceeechhhH--Hhcc-CCcEEEEEcCHHHHHhh-h----cC
Q 023493 148 GYQQAETE----VL----------KQLSSMGRLVVCAGNGAVQSSANL--ALLR-HGISLWIDVPPGMVARM-D----HS 205 (281)
Q Consensus 148 ~fr~~e~~----vl----------~~l~~~~~~VIa~G~g~v~~~~~~--~~L~-~~~vV~L~~s~e~l~~R-~----~R 205 (281)
.++..+.. .+ ..+... ..++++++|+|+...+. .+++ .+++|||++|++++.+| . .|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~-~~~~~~~~~~vi~g~~~~~~~~~~~~~vi~l~a~~e~~~~R~~~~~~~r 160 (219)
T 2h92_A 82 VTDFLRNNDVTQHVSYVASKEPVRSFAVKK-QKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLR 160 (219)
T ss_dssp CGGGSSSSHHHHHHHHHHTSHHHHHHHHHH-HHHHHTTCCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHHHHHT
T ss_pred chhhcCcHHHHHHHHHhccCHHHHHHHHHH-HHHhccCCcEEEEcCCccceecCCCCEEEEEECCHHHHHHHHHHHHHhc
Confidence 22211000 00 000000 00112222333322221 1344 67999999999999999 2 45
Q ss_pred CCCCcChHHHHHHHHHHhh---------ccccCCc-EEEEcCccccccccCCCCCCCHHHHHHHHHHHHH
Q 023493 206 GFPESEVLPQLFALYKEMR---------DGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 206 ~r~~~~~~~~l~~~~~~r~---------~~y~~ad-~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~ 265 (281)
++. ...+.+.+.+.++. +.|..+| ++|++ ++.+++++++.|.+.+.
T Consensus 161 ~~~--~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~------------~~~~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 161 GIE--SNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDT------------TGKSIEEVTDEILAMVS 216 (219)
T ss_dssp TCC--CCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEEC------------TTCCHHHHHHHHHHHHH
T ss_pred Ccc--cCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEEC------------CCCCHHHHHHHHHHHHh
Confidence 652 12344555555443 6676666 89985 46899999999988775
No 26
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.66 E-value=1.1e-15 Score=128.51 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=96.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC--CC----ChHHHHHhhhhhhHHHHHHHHHH----HHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GE----SAAKAFRESDEKGYQQAETEVLK----QLS 161 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g--~~----~i~eif~~~ge~~fr~~e~~vl~----~l~ 161 (281)
+++.|+|+|+|||||||+|+.|++.+|++++|.|++++.... +. .+.+++. .|+..+.+.....+. ...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~ 80 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK-EGKIVPVEITISLLKREMDQTM 80 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhhh
Confidence 578899999999999999999999999999999999876531 11 1233333 344333332222221 111
Q ss_pred ---cCCCeEEEeCCceeechhhHH----hc----cCCcEEEEEcCHHHHHhh-hcC----CCCCcC---hHHHHHHHHHH
Q 023493 162 ---SMGRLVVCAGNGAVQSSANLA----LL----RHGISLWIDVPPGMVARM-DHS----GFPESE---VLPQLFALYKE 222 (281)
Q Consensus 162 ---~~~~~VIa~G~g~v~~~~~~~----~L----~~~~vV~L~~s~e~l~~R-~~R----~r~~~~---~~~~l~~~~~~ 222 (281)
.....||..| .+....++. .+ ..+.+|||++|++++.+| .+| +++... ....+...+..
T Consensus 81 ~~~~~~~~vi~dg--~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~ 158 (196)
T 1tev_A 81 AANAQKNKFLIDG--FPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQS 158 (196)
T ss_dssp HHCTTCCEEEEES--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHH
T ss_pred ccccCCCeEEEeC--CCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHh
Confidence 1234455433 333333221 11 145899999999999999 433 444322 12234444444
Q ss_pred hhc---ccc-CCcE-EEEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 223 MRD---GYA-TADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 223 r~~---~y~-~ad~-~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
+.+ .|. .+++ +||+ +.++++++++|.+.+.+
T Consensus 159 ~~~~~~~y~~~~~~~~id~-------------~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 159 TKPIIDLYEEMGKVKKIDA-------------SKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHHHTTCEEEEET-------------TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEC-------------CCCHHHHHHHHHHHHHh
Confidence 444 454 3565 7874 48999999999988864
No 27
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.65 E-value=6.9e-16 Score=134.00 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=75.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHH------hCCCChHHHHHhhhhhhHHHHHHHHHHHHhcC-
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKGYQQAETEVLKQLSSM- 163 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~------~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~- 163 (281)
.+++.|+|+|+|||||||+|+.||+.+|++++++|+++++. .| ..+.+++.. |+..+++....++......
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g-~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~ 80 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIG-LEAKSIIES-GNFVGDEIVLGLVKEKFDLG 80 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CC-HHHHHHHHH-TCCCCHHHHHHHHHHHHHTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHH-HHHHHHHHC-CCcCCHHHHHHHHHHHHhcc
Confidence 35689999999999999999999999999999999998865 34 445666654 5555566555555443321
Q ss_pred --CCeEEEeCCceeec---hhhHH-hc-----cCCcEEEEEcCHHHHHhh-hcC
Q 023493 164 --GRLVVCAGNGAVQS---SANLA-LL-----RHGISLWIDVPPGMVARM-DHS 205 (281)
Q Consensus 164 --~~~VIa~G~g~v~~---~~~~~-~L-----~~~~vV~L~~s~e~l~~R-~~R 205 (281)
+..+|..| +... ...+. ++ ..+.+|||++|++++.+| ..|
T Consensus 81 ~~~~~~i~dg--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R 132 (217)
T 3be4_A 81 VCVNGFVLDG--FPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGR 132 (217)
T ss_dssp TTTTCEEEES--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred ccCCCEEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 22333333 2211 11122 22 246899999999999999 443
No 28
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.65 E-value=7.4e-16 Score=131.80 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=97.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHH------HhCCCChHHHHHhhhhhhHHHHHHHHHHHHhc-CCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDEKGYQQAETEVLKQLSS-MGR 165 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~------~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~-~~~ 165 (281)
++.|+|+|++||||||+++.|++.+|+.++|+|.+... ..| ....+ ......++ .+..... ...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~-----~l~~~~~~~~~ 88 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEG-IPLTD---DDRWPWLA-----AIGERLASREP 88 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHT-CCCCH---HHHHHHHH-----HHHHHHTSSSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcC-CCCCc---hhhHHHHH-----HHHHHHhcCCC
Confidence 56899999999999999999999999999999987421 112 11111 00111122 2222222 334
Q ss_pred eEEEeCCceeechhhHHhcc-----CCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhcccc-CCcEEEEcCc
Q 023493 166 LVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TADVTVSLQK 238 (281)
Q Consensus 166 ~VIa~G~g~v~~~~~~~~L~-----~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~y~-~ad~~Id~~~ 238 (281)
+|++++. .....+..+. ...+|||++|++++.+| .+|+....+ .+.+..++..+.+.|. .++++||+
T Consensus 89 vivd~~~---~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Id~-- 162 (202)
T 3t61_A 89 VVVSCSA---LKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMP-SSLLQTQLETLEDPRGEVRTVAVDV-- 162 (202)
T ss_dssp CEEECCC---CSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCC-HHHHHHHHHHCCCCTTSTTEEEEES--
T ss_pred EEEECCC---CCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCC-HHHHHHHHHhcCCCCCCCCeEEEeC--
Confidence 5555432 2333444343 25899999999999999 555322112 4567777777777665 47889985
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 239 VASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 239 ~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
+.++++++++|++.+.+.
T Consensus 163 -----------~~~~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 163 -----------AQPLAEIVREALAGLARL 180 (202)
T ss_dssp -----------SSCHHHHHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHHh
Confidence 389999999999998754
No 29
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.64 E-value=4.1e-15 Score=124.80 Aligned_cols=158 Identities=12% Similarity=0.081 Sum_probs=92.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchHHHHHh---CCC--ChHHHHHhhhhhhHHHHHH---HHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAA---GGE--SAAKAFRESDEKGYQQAET---EVLK 158 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~li~~~~---g~~--~i~eif~~~ge~~fr~~e~---~vl~ 158 (281)
+++.|+|+|+|||||||+++.|++.++ +++++.|+++++.. | . +..+++. .....+...+. +.+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 79 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEEN-LVSDRDQMRK-MDPETQKRIQKMAGRKIA 79 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTT-SCSSGGGGSS-CCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccC-CCCCHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999 99999988776542 2 2 2222211 01111222222 2233
Q ss_pred HHhcCCCeEEEeCCceeechhhH------Hhc---cCCcEEEEEcCHHHHHh-h-hc--CCCCCcChH-----HHHHHHH
Q 023493 159 QLSSMGRLVVCAGNGAVQSSANL------ALL---RHGISLWIDVPPGMVAR-M-DH--SGFPESEVL-----PQLFALY 220 (281)
Q Consensus 159 ~l~~~~~~VIa~G~g~v~~~~~~------~~L---~~~~vV~L~~s~e~l~~-R-~~--R~r~~~~~~-----~~l~~~~ 220 (281)
.+.... .||.+|.+.+.....+ ..+ ..+++|||++|++++.+ | .. |+++..... ..+...+
T Consensus 80 ~~~~~~-~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~~ 158 (192)
T 1kht_A 80 EMAKES-PVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCA 158 (192)
T ss_dssp HHHTTS-CEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHH
T ss_pred hhccCC-eEEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHHH
Confidence 333333 4555665543322211 122 36789999999999996 7 55 777643321 1233333
Q ss_pred HHhhccccCC-cEEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 221 KEMRDGYATA-DVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 221 ~~r~~~y~~a-d~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
.++.+.|..+ .++|++ .+.++++++++|++.+
T Consensus 159 ~~~~~~~~~~~~~~i~~------------~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 159 AMSYGVLTGATVKIVQN------------RNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHHHHHHHCCEEEEEEC------------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEeC------------CCCCHHHHHHHHHHHh
Confidence 3343444333 344542 2356999999998875
No 30
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.63 E-value=1.9e-15 Score=135.15 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=100.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH---hCCcee--cCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCe
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA---LRYYYF--DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~---l~~~~~--d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (281)
+++.|+|+|+|||||||+|+.|++. +|+.++ |.|.+.+...+ |...++..++..+...+...... ..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-------~~~~~e~~~~~~~~~~i~~~l~~-~~ 74 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-------WKEKYEEFIKKSTYRLIDSALKN-YW 74 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-------CCGGGHHHHHHHHHHHHHHHHTT-SE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHhhC-CE
Confidence 4678999999999999999999998 789888 88887654332 23335555666555556655544 55
Q ss_pred EEEeCCceeechhhHHhc----c----CCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhh---ccc--cCCcE
Q 023493 167 VVCAGNGAVQSSANLALL----R----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMR---DGY--ATADV 232 (281)
Q Consensus 167 VIa~G~g~v~~~~~~~~L----~----~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~---~~y--~~ad~ 232 (281)
||..+ .......+..+ + .+.+|||++|++++.+| ..|+++.. .+.+..++..+. +.| ..+++
T Consensus 75 vIiD~--~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~--~~~l~~~~~~~e~~~~~~~~~~~~~ 150 (260)
T 3a4m_A 75 VIVDD--TNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIP--NEVIKKMYEKFDEPGKKYKWDEPFL 150 (260)
T ss_dssp EEECS--CCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSC--HHHHHHHHHHCCCTTSSCGGGCCSE
T ss_pred EEEeC--CcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCC--HHHHHHHHHHhcCccccCCCCCCEE
Confidence 55543 22233333222 1 35899999999999999 66765431 244555544433 334 34789
Q ss_pred EEEcCccccccccCCCCCCCHHHHHHHHHHHHH
Q 023493 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 233 ~Id~~~~a~~l~~~dts~~speeva~~Il~~i~ 265 (281)
+||++ ...+++++++.|.+.+.
T Consensus 151 ~Id~~-----------~~~~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 151 IIDTT-----------KDIDFNEIAKKLIEKSK 172 (260)
T ss_dssp EEETT-----------SCCCHHHHHHHHHHHHT
T ss_pred EEeCC-----------CCCCHHHHHHHHHhccc
Confidence 99863 22689999998888765
No 31
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.63 E-value=2.2e-15 Score=130.66 Aligned_cols=107 Identities=11% Similarity=0.118 Sum_probs=69.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh-CC----CChHHHHHhhhhhhHHHHHHHHHHHHhc----
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVLKQLSS---- 162 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~-g~----~~i~eif~~~ge~~fr~~e~~vl~~l~~---- 162 (281)
+++.|+|+|+|||||||+|+.||+.+|+.++++|+++++.. ++ ..+.+++.. |+..+.+....++.....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQ-GGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHC-CCcCCHHHHHHHHHHHHHhccc
Confidence 46899999999999999999999999999999999987642 21 223444432 444445444444444332
Q ss_pred -CCCeEEEeCCceeechhhH----Hhc-----cCCcEEEEEcCHHHHHhh
Q 023493 163 -MGRLVVCAGNGAVQSSANL----ALL-----RHGISLWIDVPPGMVARM 202 (281)
Q Consensus 163 -~~~~VIa~G~g~v~~~~~~----~~L-----~~~~vV~L~~s~e~l~~R 202 (281)
...+|+ .| +....... .++ ..+++|||++|++++.+|
T Consensus 82 ~~~~~i~-dg--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R 128 (220)
T 1aky_A 82 CKNGFIL-DG--FPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAR 128 (220)
T ss_dssp GGSCEEE-ES--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred cCCCeEE-eC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 223333 33 22111111 122 146899999999999999
No 32
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.62 E-value=3.6e-15 Score=125.61 Aligned_cols=142 Identities=13% Similarity=0.037 Sum_probs=79.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEE
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~--~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa 169 (281)
+++.|+|+|+|||||||+++.|++.+|+.+++.|.+.+...+. ..-.+.+.......+.... ..+..+...+..||.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~vi~ 82 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLY-HTAATILQSGQSLIM 82 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHH-HHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHH-HHHHHHHhCCCeEEE
Confidence 5688999999999999999999999999999999987655430 1101111111111111111 122232333344444
Q ss_pred eCCceeechh---hHHhcc-----CCcEEEEEcCHHHHHhh-hcCC----CCC----cChHH--HHHHHHHHhhcccc-C
Q 023493 170 AGNGAVQSSA---NLALLR-----HGISLWIDVPPGMVARM-DHSG----FPE----SEVLP--QLFALYKEMRDGYA-T 229 (281)
Q Consensus 170 ~G~g~v~~~~---~~~~L~-----~~~vV~L~~s~e~l~~R-~~R~----r~~----~~~~~--~l~~~~~~r~~~y~-~ 229 (281)
.+.. .... .+..+. ..++|||++|++++.+| ..|+ ++. .+... .+...++.+.++|. .
T Consensus 83 d~~~--~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
T 2rhm_A 83 ESNF--RVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGG 160 (193)
T ss_dssp EECC--CHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCCCCCCS
T ss_pred ecCC--CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCCccCCC
Confidence 4322 1111 111132 23789999999999999 4442 331 12222 24455555566665 4
Q ss_pred CcEEEEc
Q 023493 230 ADVTVSL 236 (281)
Q Consensus 230 ad~~Id~ 236 (281)
++++||+
T Consensus 161 ~~~~Idt 167 (193)
T 2rhm_A 161 PLLTVDT 167 (193)
T ss_dssp CEEEEEC
T ss_pred CEEEEeC
Confidence 7888986
No 33
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.61 E-value=1.6e-15 Score=126.83 Aligned_cols=152 Identities=13% Similarity=0.158 Sum_probs=88.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcee-cCchHHHHHhCCCChHHHHHhhhhhhHH------HHHHHHHHHHhcC-
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEAAGGESAAKAFRESDEKGYQ------QAETEVLKQLSSM- 163 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~-d~D~li~~~~g~~~i~eif~~~ge~~fr------~~e~~vl~~l~~~- 163 (281)
+++.|+|+|+|||||||+|+.|++.+|++++ |.|.+ | ..+.+++. .|...|+ +...+++..+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~-----g-~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~l~~~ 76 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM-----G-QALRKLTP-GFSGDPQEHPMWIPLMLDALQYASREA 76 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH-----H-HHHHHTST-TCCSCGGGSTTHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh-----H-HHHHHhCc-cccchhhhhHHHHHHHHHHHHHHHHhC
Confidence 6789999999999999999999999999998 64322 1 11222222 2222221 2222334444332
Q ss_pred CCeEEEeCCceeec----hhhHHhcc-CCcE---EEEEcCHHHHHhh-hcCC-CCCcChHHHHHHHHHHhhccccCCcEE
Q 023493 164 GRLVVCAGNGAVQS----SANLALLR-HGIS---LWIDVPPGMVARM-DHSG-FPESEVLPQLFALYKEMRDGYATADVT 233 (281)
Q Consensus 164 ~~~VIa~G~g~v~~----~~~~~~L~-~~~v---V~L~~s~e~l~~R-~~R~-r~~~~~~~~l~~~~~~r~~~y~~ad~~ 233 (281)
+..||..+ .... ...+..++ .+.. |||++|++++.+| ..|+ ++. ..+.+...+..+.+. ..++ +
T Consensus 77 g~~vi~d~--~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~--~~~~~~~~~~~~~~~-~~~~-~ 150 (183)
T 2vli_A 77 AGPLIVPV--SISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQV--NVGTVEDRLNELRGE-QFQT-H 150 (183)
T ss_dssp SSCEEEEE--CCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----C--CHHHHHHHHHHHTSG-GGCS-E
T ss_pred CCcEEEee--eccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccch--hHHHHHHHHHhhccc-ccce-E
Confidence 44455432 1111 12233443 4444 9999999999999 5554 342 135666677776655 4355 8
Q ss_pred EEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 234 VSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 234 Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
||+ ++.++++++++|.+.+...+
T Consensus 151 Id~------------~~~~~~~~~~~I~~~l~~~~ 173 (183)
T 2vli_A 151 IDT------------AGLGTQQVAEQIAAQVGLTL 173 (183)
T ss_dssp EEC------------TTCCHHHHHHHHHHHHTCCC
T ss_pred eeC------------CCCCHHHHHHHHHHHHHHhc
Confidence 875 46899999999999886543
No 34
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.61 E-value=3.7e-15 Score=125.35 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=93.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh---CCceecCchHHHHHhCCCChHHHHHhhhhh------hHHHHHH-H----HHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFRESDEK------GYQQAET-E----VLKQ 159 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l---~~~~~d~D~li~~~~g~~~i~eif~~~ge~------~fr~~e~-~----vl~~ 159 (281)
+.|+|+|+|||||||+++.|++.+ |++++++|.......| ..+.+++.. |+. .|...+. . ++..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~-~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~i~~ 78 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVG-EVLREILLT-EELDERTELLLFEASRSKLIEEKIIP 78 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHH-HHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchH-HHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 9999998742111111 112233322 211 1111111 1 1222
Q ss_pred HhcCCCeEEEe----------CCceeechhhHH----hc----cCCcEEEEEcCHHHHHhh-hcCCCCC-cChHHHHHHH
Q 023493 160 LSSMGRLVVCA----------GNGAVQSSANLA----LL----RHGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFAL 219 (281)
Q Consensus 160 l~~~~~~VIa~----------G~g~v~~~~~~~----~L----~~~~vV~L~~s~e~l~~R-~~R~r~~-~~~~~~l~~~ 219 (281)
....+..|+.. |.+......... ++ ..+.+|||++|++++.+| .+|++.. .+....+...
T Consensus 79 ~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~ 158 (195)
T 2pbr_A 79 DLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENKEFLEKVRKG 158 (195)
T ss_dssp HHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred HHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchHHHHHHHHHH
Confidence 23345667665 322222221111 12 367999999999999999 6555542 2233344444
Q ss_pred HHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 220 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 220 ~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
|.+....| ...++||+ +.++++++++|.+.+.++
T Consensus 159 ~~~~~~~~-~~~~~Id~-------------~~~~~~~~~~i~~~l~~~ 192 (195)
T 2pbr_A 159 FLELAKEE-ENVVVIDA-------------SGEEEEVFKEILRALSGV 192 (195)
T ss_dssp HHHHHHHS-TTEEEEET-------------TSCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhC-CCEEEEEC-------------CCCHHHHHHHHHHHHHHH
Confidence 55543333 34488885 479999999999888654
No 35
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.61 E-value=1e-14 Score=127.88 Aligned_cols=160 Identities=14% Similarity=0.145 Sum_probs=98.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh------CCCChHHHHHhhhhhhHHHHHHHHHHHHhcCC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~------g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~ 164 (281)
..++.|+|+|+|||||||+|+.||+.+|+.++++|+++++.. | ..+.+++.. |...+.+....++.......
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g-~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~ 91 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELG-KKLKATMDA-GKLVSDEMVLELIEKNLETP 91 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHH-HHHHHHHHT-TCCCCHHHHHHHHHHHHTSG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhH-HHHHHHHHC-CCcCCHHHHHHHHHHHHhcc
Confidence 356789999999999999999999999999999999887632 2 233444432 44444554444454433221
Q ss_pred ---CeEEEeCCceeechhhH----Hhc-----cCCcEEEEEcCHHHHHhh-hcC--------------------------
Q 023493 165 ---RLVVCAGNGAVQSSANL----ALL-----RHGISLWIDVPPGMVARM-DHS-------------------------- 205 (281)
Q Consensus 165 ---~~VIa~G~g~v~~~~~~----~~L-----~~~~vV~L~~s~e~l~~R-~~R-------------------------- 205 (281)
..+|..| +....... .++ ..+.+|||++|++++.+| ..|
T Consensus 92 ~~~~g~ildg--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~ 169 (233)
T 1ak2_A 92 PCKNGFLLDG--FPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDIT 169 (233)
T ss_dssp GGTTCEEEES--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTT
T ss_pred cccCcEEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccc
Confidence 1233333 11111111 122 257999999999999999 544
Q ss_pred CCC----CcChH----HHHHHHHHHhhc---cccC--CcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 206 GFP----ESEVL----PQLFALYKEMRD---GYAT--ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 206 ~r~----~~~~~----~~l~~~~~~r~~---~y~~--ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
+++ .++.. ..+...++.+.+ .|.. ..++||. +.++++++++|.+.+.++
T Consensus 170 ~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~-------------~~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 170 GEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDA-------------SQTPDVVFASILAAFSKA 231 (233)
T ss_dssp CCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEET-------------TSCHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC-------------CCCHHHHHHHHHHHHHhh
Confidence 221 11112 223332233333 3432 3567774 489999999999998765
No 36
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.61 E-value=5e-15 Score=126.38 Aligned_cols=159 Identities=13% Similarity=0.145 Sum_probs=94.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh--CCCCh----HHHHHhhhhhhHHHHHHHHHH----HHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESA----AKAFRESDEKGYQQAETEVLK----QLS 161 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~--g~~~i----~eif~~~ge~~fr~~e~~vl~----~l~ 161 (281)
+++.|+|+|+|||||||+++.|++.+|+.++|+|++++... ++... ..++. .|+..+.+.....+. ...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~~l 92 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK-EGQIVPQEITLALLRNAISDNV 92 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhhh
Confidence 45789999999999999999999999999999999887653 22332 22332 244333333332222 222
Q ss_pred cCC-CeEEEeCCceeechhhHH----hcc-CCcEEEEEcCHHHHHhh-hcC----CCCCcChHHH----HHHHHHHhhcc
Q 023493 162 SMG-RLVVCAGNGAVQSSANLA----LLR-HGISLWIDVPPGMVARM-DHS----GFPESEVLPQ----LFALYKEMRDG 226 (281)
Q Consensus 162 ~~~-~~VIa~G~g~v~~~~~~~----~L~-~~~vV~L~~s~e~l~~R-~~R----~r~~~~~~~~----l~~~~~~r~~~ 226 (281)
..+ ..+|-.|. ........ .+. .+++|||++|++++.+| .+| ++.. +..+. +...++.+.+.
T Consensus 93 ~~g~~~~i~dg~--~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~-~~~e~~~~r~~~~~~~~~~~ 169 (203)
T 1ukz_A 93 KANKHKFLIDGF--PRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSD-DNIESIKKRFNTFKETSMPV 169 (203)
T ss_dssp HTTCCEEEEETC--CCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTT-CSHHHHHHHHHHHHHTTHHH
T ss_pred ccCCCeEEEeCC--CCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCC-CCHHHHHHHHHHHHHhhHHH
Confidence 222 23333332 11111111 222 68999999999999999 443 3332 22222 33323333333
Q ss_pred ---ccCCcEE--EEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 227 ---YATADVT--VSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 227 ---y~~ad~~--Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
|..++.+ ||+ +.+++++..+|.+.+.+.
T Consensus 170 ~~~~~~~~~vi~id~-------------~~~~e~v~~~i~~~l~~~ 202 (203)
T 1ukz_A 170 IEYFETKSKVVRVRC-------------DRSVEDVYKDVQDAIRDS 202 (203)
T ss_dssp HHHHHTTTCEEEEEC-------------SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcEEEEEC-------------CCCHHHHHHHHHHHHhcc
Confidence 3446643 564 489999999999988753
No 37
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.61 E-value=3.4e-15 Score=127.91 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=92.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhhhhhHHH---H--------------HH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGYQQ---A--------------ET 154 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g--~~~i~eif~~~ge~~fr~---~--------------e~ 154 (281)
..|+|+|++||||||+++.|++ +|++++|+|.+.+.... ...+.+++...|+..|+. . ..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 4799999999999999999998 99999999998876432 123445555555433221 0 00
Q ss_pred HHHH-------------HHhc-CCCeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC-CCCCcChHHHHH
Q 023493 155 EVLK-------------QLSS-MGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESEVLPQLF 217 (281)
Q Consensus 155 ~vl~-------------~l~~-~~~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l~ 217 (281)
..+. .+.. ....||..+. .+.+.. +.+ .+.+|||++|++++.+| ..| +++. +.+.
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~--~l~e~~--~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~----e~~~ 153 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVP--LLIENK--LTALCDRILVVDVSPQTQLARSAQRDNNNF----EQIQ 153 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECT--TTTTTT--CGGGCSEEEEEECCHHHHHHHHC-----CH----HHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCEEEEEec--hhhhcC--cHhhCCEEEEEECCHHHHHHHHHHcCCCCH----HHHH
Confidence 0111 1111 1223333221 111111 233 68999999999999999 555 4442 2333
Q ss_pred HHHH---HhhccccCCcEEEEcCccccccccCCCCCCCHH----HHHHHHHHHHHHHHh
Q 023493 218 ALYK---EMRDGYATADVTVSLQKVASQLGYDDLDAVTTE----DMTLEVLKEIEKLTR 269 (281)
Q Consensus 218 ~~~~---~r~~~y~~ad~~Id~~~~a~~l~~~dts~~spe----eva~~Il~~i~~~~~ 269 (281)
+.+. .+.+.|+.||++|+++ + +++ +++++|.+.+.++..
T Consensus 154 ~r~~~q~~~~~~~~~ad~vIdn~------------~-~~~~~~~~~~~~i~~~~~~~~~ 199 (206)
T 1jjv_A 154 RIMNSQVSQQERLKWADDVINND------------A-ELAQNLPHLQQKVLELHQFYLQ 199 (206)
T ss_dssp HHHHHSCCHHHHHHHCSEEEECC------------S-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHhCCEEEECC------------C-CccccHHHHHHHHHHHHHHHHH
Confidence 3333 2344555699999863 4 999 888888888776554
No 38
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.60 E-value=7.4e-15 Score=126.42 Aligned_cols=147 Identities=13% Similarity=0.085 Sum_probs=97.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhH---------------HHHH-H
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGY---------------QQAE-T 154 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~f---------------r~~e-~ 154 (281)
-...+|.|+|++||||||+|+.|++.+|++++|+|.++++.++ ..+.+++..+|+..| .+.+ .
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~-~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~ 88 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLE-EVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENL 88 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH-HTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHH-HHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHH
Confidence 3457899999999999999999999999999999999888776 455666666665432 2111 1
Q ss_pred HHHHH-------------HhcCCCeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhhhcCCCCCcChHHHHHHHH
Q 023493 155 EVLKQ-------------LSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARMDHSGFPESEVLPQLFALY 220 (281)
Q Consensus 155 ~vl~~-------------l~~~~~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~ 220 (281)
..++. +......||..+ ....+..+ .+ .+.+|||++|++++.+|. +.+++
T Consensus 89 ~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~--pll~e~~~--~~~~d~vi~v~a~~e~r~~Rl------------i~~q~ 152 (192)
T 2grj_A 89 KKLELLVHPLMKKRVQEIINKTSGLIVIEA--ALLKRMGL--DQLCDHVITVVASRETILKRN------------READR 152 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEEC--TTTTTTTG--GGGCSEEEEEECCHHHHHHHC------------SSHHH
T ss_pred HHHHhhhCHHHHHHHHHHHHHcCCEEEEEE--eceeecCh--HHhCCEEEEEECCHHHHHHHH------------HHhcC
Confidence 11111 111123444332 11222222 22 689999999999999984 11122
Q ss_pred HH-hhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 221 KE-MRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 221 ~~-r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
.. ..+.++.||++|++ +.+++++..+|.+.+.++
T Consensus 153 ~~~~~~~~~~AD~vI~n-------------~~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 153 RLKFQEDIVPQGIVVAN-------------NSTLEDLEKKVEEVMKLV 187 (192)
T ss_dssp HHTTCTTCCCCSEEEEC-------------SSCHHHHHHHHHHHHHHH
T ss_pred CchhhhHHhcCCEEEEC-------------CCCHHHHHHHHHHHHHHH
Confidence 22 12223469999996 479999999999888766
No 39
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.60 E-value=2.8e-15 Score=130.73 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=71.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh-CC----CChHHHHHhhhhhhHHHHHHHHH-HHHhc--C
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVL-KQLSS--M 163 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~-g~----~~i~eif~~~ge~~fr~~e~~vl-~~l~~--~ 163 (281)
+++.|+|+|+|||||||+++.|++.+|+.++|+|++++... ++ ..+.+++.. |+..+++.....+ ..+.. .
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~ 84 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLALHELKNLTQ 84 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTCTT
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccC
Confidence 46889999999999999999999999999999999887644 11 233344433 4444444333323 33432 3
Q ss_pred CCeEEEeCCceeechhhHHhc-cCCcEEEEEcCHHHHHhh
Q 023493 164 GRLVVCAGNGAVQSSANLALL-RHGISLWIDVPPGMVARM 202 (281)
Q Consensus 164 ~~~VIa~G~g~v~~~~~~~~L-~~~~vV~L~~s~e~l~~R 202 (281)
..+|++.+.+.+.....+..+ ..+.+|||++|++++.+|
T Consensus 85 ~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R 124 (227)
T 1zd8_A 85 YSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQR 124 (227)
T ss_dssp SCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHH
Confidence 345554433332222223322 368999999999999999
No 40
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.59 E-value=7.3e-16 Score=131.72 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=94.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhhhhhHH---HHHHHH------------
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGYQ---QAETEV------------ 156 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g--~~~i~eif~~~ge~~fr---~~e~~v------------ 156 (281)
+.|+|+|++||||||+++.|++ +|++++|+|.++++.+. ...+.+++...|+..|+ ..+...
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 99999999999876553 12344455444432221 000000
Q ss_pred --HHH-------------Hhc-CC-CeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHH
Q 023493 157 --LKQ-------------LSS-MG-RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFA 218 (281)
Q Consensus 157 --l~~-------------l~~-~~-~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~ 218 (281)
+.. +.. .. ..||..|. ...+.++.. ..+.+|||++|++++.+| ..|+.+. +.+..
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~--~l~~~~~~~-~~~~~i~l~~~~e~~~~Rl~~R~~~~----~~~~~ 153 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEAS--LLVEKGTYK-NYDKLIVVYAPYEVCKERAIKRGMSE----EDFER 153 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECS--CSTTTTCGG-GSSEEEEECCCHHHHHHHHHHTCCCH----HHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEcc--ccccCCchh-hCCEEEEEECCHHHHHHHHHHcCCCH----HHHHH
Confidence 010 110 11 34444432 222222211 167999999999999999 6665442 23333
Q ss_pred HHHHhhc---cccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 219 LYKEMRD---GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 219 ~~~~r~~---~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
.+..+.+ .+..+|++|++ +.++++++.+|.+.+.++.
T Consensus 154 ~~~~~~~~~~~~~~ad~vId~-------------~~~~~~~~~~i~~~l~~~~ 193 (204)
T 2if2_A 154 RWKKQMPIEEKVKYADYVIDN-------------SGSIEETYKQVKKVYEELT 193 (204)
T ss_dssp HHTTSCCHHHHGGGCSEECCC-------------SSCHHHHHHHHHHHHHTTC
T ss_pred HHHhCCChhHHHhcCCEEEEC-------------CCCHHHHHHHHHHHHHHHh
Confidence 3333322 23358888875 3699999999998886543
No 41
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.58 E-value=9e-15 Score=130.29 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=36.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~ 130 (281)
++..|.|+|++||||||+++.|+++||+.++|+|.+++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 578999999999999999999999999999999998844
No 42
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.57 E-value=1.9e-14 Score=124.41 Aligned_cols=156 Identities=13% Similarity=0.111 Sum_probs=97.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh--CCCChHHHHHhhhhhhHHH------------------
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESDEKGYQQ------------------ 151 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~--g~~~i~eif~~~ge~~fr~------------------ 151 (281)
+++.|+|+|++||||||+++.|++ +|++++|+|.++++.. |+..+.+++...|+..+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 357899999999999999999998 9999999999987754 2233445555444322210
Q ss_pred ----HHH---HHH-----HHHhc-CCCeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC-CCCCcChHHH
Q 023493 152 ----AET---EVL-----KQLSS-MGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESEVLPQ 215 (281)
Q Consensus 152 ----~e~---~vl-----~~l~~-~~~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~ 215 (281)
.+. ..+ ..+.. ...+++..+ .. +...+ +.. .+.+|||++|++++.+| ..| +.+ .+.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~-l~~~~--~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~----~~~ 153 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PL-LVENS--LYKKANRVLVVDVSPETQLKRTMQRDDVT----REH 153 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TT-TTTTT--GGGGCSEEEEEECCHHHHHHHHHHHHTCC----HHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-ee-eeccC--ccccCCEEEEEECCHHHHHHHHHHcCCCC----HHH
Confidence 000 000 01111 123343322 11 11222 223 68999999999999999 554 333 233
Q ss_pred HHHHHHHhhccc---cCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 216 LFALYKEMRDGY---ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 216 l~~~~~~r~~~y---~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
+...+..+.+.| ..+|++|+++ + ++++++++|.+.+..++.
T Consensus 154 ~~~~~~~~~~~~~~~~~ad~vId~~------------~-~~~~~~~~I~~~l~~~~~ 197 (218)
T 1vht_A 154 VEQILAAQATREARLAVADDVIDNN------------G-APDAIASDVARLHAHYLQ 197 (218)
T ss_dssp HHHHHHHSCCHHHHHHHCSEEEECS------------S-CTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHhCCEEEECC------------C-CHHHHHHHHHHHHHHHHH
Confidence 444444443333 2489999863 4 899999999999987765
No 43
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.57 E-value=2.8e-14 Score=124.67 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=105.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh--CCCChHHHHHhhhhhhH----------------HHHH-H
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESDEKGY----------------QQAE-T 154 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~--g~~~i~eif~~~ge~~f----------------r~~e-~ 154 (281)
-.|.|+|.+||||||+++.|++ +|++++|+|.+.++.+ |+..+.+++..+|+..| .+.+ .
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 4689999999999999999998 9999999999988866 33567788877776543 1111 1
Q ss_pred HHHHHHh-------------c-CCCeEEEeCCceeech-hhHHhccCCcEEEEEcCHHHHHhh-hcC-CCCCcChHHHHH
Q 023493 155 EVLKQLS-------------S-MGRLVVCAGNGAVQSS-ANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLF 217 (281)
Q Consensus 155 ~vl~~l~-------------~-~~~~VIa~G~g~v~~~-~~~~~L~~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l~ 217 (281)
+.|+.+. . ....|+... ..+.+ ..+.. ..|.+||++||++++.+| ..| |.+.++....+.
T Consensus 89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~--pLL~E~~~~~~-~~D~vi~V~ap~e~r~~Rl~~Rdg~s~eea~~ri~ 165 (210)
T 4i1u_A 89 RRLEAITHPLIRAETEREARDAQGPYVIFVV--PLLVESRNWKA-RCDRVLVVDCPVDTQIARVMQRNGFTREQVEAIIA 165 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC--TTCTTCHHHHH-HCSEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE--ecccccCCccc-cCCeEEEEECCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 1122211 1 122333322 12233 33321 268999999999999999 444 666544444554
Q ss_pred HHHHHhhccccCCcEEEEcCccccccccCCCCC-CCHHHHHHHHHHHHHHHHh
Q 023493 218 ALYKEMRDGYATADVTVSLQKVASQLGYDDLDA-VTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 218 ~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~-~speeva~~Il~~i~~~~~ 269 (281)
.++.. .+.++.||++|++ + .+.+++..+|.+.+.+++.
T Consensus 166 ~Q~~~-eek~~~AD~VIdN-------------~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 166 RQATR-EARLAAADDVIVN-------------DAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp HSCCH-HHHHHTCSEEEEC-------------SSCCHHHHHHHHHHHHHHHHH
T ss_pred HcCCh-HHHHHhCCEEEEC-------------CCCCHHHHHHHHHHHHHHHHH
Confidence 44322 2233469999996 4 7999999999999888765
No 44
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.56 E-value=3.2e-15 Score=131.35 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=94.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHH------hCCCCh------HHHHH----------------
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESA------AKAFR---------------- 142 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~------~g~~~i------~eif~---------------- 142 (281)
.++..|+|+|++||||||+++.|++.+|++++|+|.+++.. .| .+. .++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 92 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQ-LGVEEVEALLALLDQHPISFGRSETGDQLV 92 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTT-CCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccC-CCcccHHHHHHHHHhccccccccCCccceE
Confidence 56889999999999999999999999999999999998652 23 321 11110
Q ss_pred -hhhhhhHHHHH---------------------HHHHHHHhcCCCeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHH
Q 023493 143 -ESDEKGYQQAE---------------------TEVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMV 199 (281)
Q Consensus 143 -~~ge~~fr~~e---------------------~~vl~~l~~~~~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l 199 (281)
..|+..++..+ ...+..+...+.+|+ .|... ...+++ .+++|||++|++++
T Consensus 93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~-~g~~~-----~~~~l~~~d~vi~L~a~~e~~ 166 (236)
T 1q3t_A 93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVM-DGRDI-----GTVVLPQAELKIFLVASVDER 166 (236)
T ss_dssp EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEE-ECSSC-----SSSSGGGCSEEEEEECCHHHH
T ss_pred eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEE-ECCcc-----hhhhccCCCEEEEEECCHHHH
Confidence 11221111000 001111222222333 22111 011333 68999999999999
Q ss_pred Hhh-h----cCCCCCcChHHHHHHHHHHh---------hccccCCc-EEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 200 ARM-D----HSGFPESEVLPQLFALYKEM---------RDGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 200 ~~R-~----~R~r~~~~~~~~l~~~~~~r---------~~~y~~ad-~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
.+| . .|++.. ..+.+.+.+.+| .++|..+| ++|++ ++.++++++++|.+.+
T Consensus 167 ~~R~~~~~~~R~~~~--~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~------------~~~s~eev~~~I~~~l 232 (236)
T 1q3t_A 167 AERRYKENIAKGIET--DLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDT------------TGLNIQEVVEKIKAEA 232 (236)
T ss_dssp HHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEEC------------SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC--CHHHHHHHHHHHhhhhhhcccccccccCCEEEEcC------------CCCCHHHHHHHHHHHH
Confidence 988 2 455421 123444444444 24565555 88985 4679999999999887
Q ss_pred HH
Q 023493 265 EK 266 (281)
Q Consensus 265 ~~ 266 (281)
..
T Consensus 233 ~~ 234 (236)
T 1q3t_A 233 EK 234 (236)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 45
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.56 E-value=3.2e-14 Score=120.48 Aligned_cols=157 Identities=13% Similarity=0.168 Sum_probs=89.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCc----hHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEE
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD----SLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D----~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa 169 (281)
+.|+|+|++||||||+++.|++.+++.+++.. .++...+. ..-..-+.. ...|.....+.+......+. +|.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~-vi~ 76 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYK-DLKKTVFKM--QIYMLTARSKQLKQAKNLEN-IIF 76 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTT-CHHHHHHHH--HHHHHHHHHHHHC------C-EEE
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHh-CccccchhH--HHHHHHHHHHHHHHhhccCC-EEE
Confidence 47999999999999999999999999877531 12222211 000000000 00111111111212222233 443
Q ss_pred eCC--------------ceeechh----------hHHhc--------cCCcEEEEEcCHHHHHhh-hcCCCCCc-----C
Q 023493 170 AGN--------------GAVQSSA----------NLALL--------RHGISLWIDVPPGMVARM-DHSGFPES-----E 211 (281)
Q Consensus 170 ~G~--------------g~v~~~~----------~~~~L--------~~~~vV~L~~s~e~l~~R-~~R~r~~~-----~ 211 (281)
... |.+.... ....+ ..+.+|||++|++++.+| ..|+++.. +
T Consensus 77 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~ 156 (205)
T 2jaq_A 77 DRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEE 156 (205)
T ss_dssp ESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCHHHHHSCHH
T ss_pred EeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCChhhhcCcHH
Confidence 321 2221111 00112 257899999999999999 66676632 2
Q ss_pred hHHHHHHHHHHhhcccc--CCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 212 VLPQLFALYKEMRDGYA--TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 212 ~~~~l~~~~~~r~~~y~--~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
....+...|.++.+.|. .++++||++ .++++++++|.+.+.++
T Consensus 157 ~~~~l~~~~~~~~~~~~~~~~~~~Id~~-------------~~~~~v~~~I~~~l~~~ 201 (205)
T 2jaq_A 157 YWETLNKNYEEFYKQNVYDFPFFVVDAE-------------LDVKTQIELIMNKLNSI 201 (205)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCEEEEETT-------------SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccccCcEEEEECC-------------CCHHHHHHHHHHHHHHh
Confidence 33556677777666673 478999863 49999999999988654
No 46
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.54 E-value=1.6e-13 Score=120.33 Aligned_cols=158 Identities=13% Similarity=0.138 Sum_probs=94.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhhhhhHHHHHHHH----HHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEV----LKQLS 161 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~-----i~eif~~~ge~~fr~~e~~v----l~~l~ 161 (281)
-+++.|+|+|+|||||+|+|+.|++.+|++++++++++++.....+ +.++.. .|.....+.-..+ +.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~-~G~lVpde~~~~lv~~~l~~~~ 105 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMME-RGELVPLEVVLALLKEAMIKLV 105 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhcc
Confidence 4577888999999999999999999999999999999887553222 222222 2322111111112 22222
Q ss_pred cCC-CeEEEeCCceeechhhHHhc-----cCCcEEEEEcCHHHHHhh-hcC----CCCCcChHHHHHHH---HHH-hh--
Q 023493 162 SMG-RLVVCAGNGAVQSSANLALL-----RHGISLWIDVPPGMVARM-DHS----GFPESEVLPQLFAL---YKE-MR-- 224 (281)
Q Consensus 162 ~~~-~~VIa~G~g~v~~~~~~~~L-----~~~~vV~L~~s~e~l~~R-~~R----~r~~~~~~~~l~~~---~~~-r~-- 224 (281)
... .+|++ |++........| ..+.+|+|++|.+++.+| ..| +|.. +..+.+.+- |.+ -.
T Consensus 106 ~~~~g~ilD---GfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~D-D~~e~i~~Rl~~Y~~~t~pl 181 (217)
T 3umf_A 106 DKNCHFLID---GYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVD-DNEETIVKRFRTFNELTKPV 181 (217)
T ss_dssp TTCSEEEEE---TBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CH-HHHHHHHHHHHHHHHHTHHH
T ss_pred ccccCcccc---cCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 222 24443 455443333333 267999999999999999 555 3442 222222222 222 12
Q ss_pred -ccccCCc--EEEEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 225 -DGYATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 225 -~~y~~ad--~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
.+|+..+ ..||. +.++++|.++|.+.+++
T Consensus 182 ~~~Y~~~~~l~~Idg-------------~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 182 IEHYKQQNKVITIDA-------------SGTVDAIFDKVNHELQK 213 (217)
T ss_dssp HHHHHTTTCEEEEET-------------TSCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEEEC-------------CCCHHHHHHHHHHHHHH
Confidence 2455433 35663 57999999999998875
No 47
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.54 E-value=2.3e-13 Score=115.84 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=92.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh------CCCC------hHHHHHh----------------hh
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGES------AAKAFRE----------------SD 145 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~------g~~~------i~eif~~----------------~g 145 (281)
+.|+|+|++||||||+|+.|++.+|++++|.|.+.+... | .+ +.++... .|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAG-VDPGDEEGLLALLEGLGVRLLAQAEGNRVLADG 81 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHT-CCTTCHHHHHHHHHHTTCEEECCTTCCEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcC-CCCCCHHHHHHHHHhCceeeeecCCCceEEECC
Confidence 389999999999999999999999999999999886542 3 21 1111111 12
Q ss_pred hhhHHHHHHH-----------------HH----HHHhcCCCeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-
Q 023493 146 EKGYQQAETE-----------------VL----KQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM- 202 (281)
Q Consensus 146 e~~fr~~e~~-----------------vl----~~l~~~~~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R- 202 (281)
+..|+..+.. .+ ..+ . +.+|+ .|.... ..+++ .+++|||++|++++.+|
T Consensus 82 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~-~~~vi-~g~~~~-----~~~~~~~d~~i~l~a~~e~~~~R~ 153 (208)
T 3ake_A 82 EDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEV-P-PPFVA-EGRDMG-----TAVFPEAAHKFYLTASPEVRAWRR 153 (208)
T ss_dssp EECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHS-C-SCEEE-EESSCC-----CCCCTTCSEEEEEECCHHHHHHHH
T ss_pred eeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHh-c-CCEEE-Ecccee-----EEEecCCcEEEEEECCHHHHHHHH
Confidence 2122111100 01 111 1 23333 232111 11223 67999999999999999
Q ss_pred hcCCCCCcChHHHHHHHHHHhhccc----c-CCc-EEEEcCccccccccCCCCCCCHHHHHHHHHHHHH
Q 023493 203 DHSGFPESEVLPQLFALYKEMRDGY----A-TAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 203 ~~R~r~~~~~~~~l~~~~~~r~~~y----~-~ad-~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~ 265 (281)
..|... + .+.+.+.+.+|.+.| . .+| ++||+ ++.+++++++.|.+.+.
T Consensus 154 ~~r~~~--~-~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~------------~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 154 ARERPQ--A-YEEVLRDLLRRDERDKAQSAPAPDALVLDT------------GGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp HHTSSS--C-HHHHHHHHHHHHHTC--CCCCCTTCEEEET------------TTSCHHHHHHHHHHHHH
T ss_pred Hhhccc--C-HHHHHHHHHHHHHHHhhcccCCCCEEEEEC------------CCCCHHHHHHHHHHHHh
Confidence 555331 2 245666677776655 3 367 89985 46799999999988764
No 48
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.54 E-value=1.7e-13 Score=114.76 Aligned_cols=158 Identities=6% Similarity=0.052 Sum_probs=91.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchHHHHHhCCCCh---HHHHHhhhhh---hHHHHHHHHHHHHh-
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESA---AKAFRESDEK---GYQQAETEVLKQLS- 161 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~li~~~~g~~~i---~eif~~~ge~---~fr~~e~~vl~~l~- 161 (281)
+.|+|+|+|||||||+++.|++.++ +.+++.|+++.+..+...+ .+-|...... .+...-...+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 81 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR 81 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhh
Confidence 5799999999999999999999998 8889888887654410111 0111110000 00000011122332
Q ss_pred -cCCCeEEEeCCceeech---------hhHHhccCCcEEEEEcCHHHHHhh--hc--CCC-CCcCh-----HHHHHHHHH
Q 023493 162 -SMGRLVVCAGNGAVQSS---------ANLALLRHGISLWIDVPPGMVARM--DH--SGF-PESEV-----LPQLFALYK 221 (281)
Q Consensus 162 -~~~~~VIa~G~g~v~~~---------~~~~~L~~~~vV~L~~s~e~l~~R--~~--R~r-~~~~~-----~~~l~~~~~ 221 (281)
..+..||.+|.+.+... .....+.++.+|||++|++++.+| .+ |++ +..+. ...+...|.
T Consensus 82 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~~~~~ 161 (194)
T 1nks_A 82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAA 161 (194)
T ss_dssp HTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHHHHHHH
Confidence 34566777765333221 111122368999999999998855 56 776 42121 123445555
Q ss_pred HhhccccCCc-EEE-EcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 222 EMRDGYATAD-VTV-SLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 222 ~r~~~y~~ad-~~I-d~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
++...|..++ ++| |+ +.++++++++|.+.+
T Consensus 162 ~~~~~~~~~~~~~I~d~-------------~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 162 TASAVLAGSTVKVIVNV-------------EGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHTCEEEEEECC-------------SSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEeCC-------------CCCHHHHHHHHHHHh
Confidence 5554442333 566 43 579999999998765
No 49
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.54 E-value=1.9e-14 Score=142.06 Aligned_cols=160 Identities=14% Similarity=0.212 Sum_probs=89.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC------CceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~------~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~ 164 (281)
-+|..|+|+|++||||||+++.|+..++ +.++|.|.+.....+...+. ...++..++.+ ..+.+.+....
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~---~~~r~~~~r~i-~~v~q~l~~~~ 442 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFS---KAHRDVNVRRI-GFVASEITKNR 442 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCS---HHHHHHHHHHH-HHHHHHHHHTT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCC---HHHHHHHHHHH-HHHHHHHHhcC
Confidence 4789999999999999999999999884 55799998875432211111 11122333332 33444554456
Q ss_pred CeEEEeCCc--eeechhhHHhcc-CC--cEEEEEcCHHHHHhhhcCCCCCcChHHHHHHHHHHhhcccc--CCcEEEEcC
Q 023493 165 RLVVCAGNG--AVQSSANLALLR-HG--ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQ 237 (281)
Q Consensus 165 ~~VIa~G~g--~v~~~~~~~~L~-~~--~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~~~r~~~y~--~ad~~Id~~ 237 (281)
..+++++.+ ......++++++ .+ ++|||++|.+++.+|..|+.........+..++..|.++|. .+|++||+
T Consensus 443 ~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~~adl~Idt- 521 (552)
T 3cr8_A 443 GIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDT- 521 (552)
T ss_dssp CEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------CCCCCCSSCSEEECC-
T ss_pred CEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCCCCCEEEEC-
Confidence 777776543 222334455665 46 88999999999999954554322223457778888888774 58999874
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 238 KVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 238 ~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
++.++++++++|++.+.+
T Consensus 522 -----------~~~s~~e~v~~Il~~L~~ 539 (552)
T 3cr8_A 522 -----------TGLAIDEAVQQILLKLEH 539 (552)
T ss_dssp -----------SSCCHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHh
Confidence 578999999999998864
No 50
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.53 E-value=4.5e-14 Score=121.54 Aligned_cols=108 Identities=14% Similarity=0.137 Sum_probs=65.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC-CC----ChHHHHHhhhhhhHHHHHHHHHHHHhc----CC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GE----SAAKAFRESDEKGYQQAETEVLKQLSS----MG 164 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g-~~----~i~eif~~~ge~~fr~~e~~vl~~l~~----~~ 164 (281)
+.|+|+|+|||||||+|+.|++.+|+.++++|+++++... +. .+.+.+.. |...........+..... ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQ-GNLVPDEVTIGIVHERLSKDDCQK 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccCCC
Confidence 4699999999999999999999999999999998877432 11 12222222 211122222222322221 22
Q ss_pred CeEEEeCCceeechhhHH----hcc-----CCcEEEEEcCHHHHHhh-hcC
Q 023493 165 RLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHS 205 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~----~L~-----~~~vV~L~~s~e~l~~R-~~R 205 (281)
.+|+ .| ......... .+. .+.+|||++|++++.+| ..|
T Consensus 80 ~~il-dg--~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 80 GFLL-DG--FPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp CEEE-ES--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred cEEE-eC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 3344 33 222222111 121 46899999999999999 554
No 51
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.53 E-value=4e-15 Score=126.28 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=91.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh-CCCChHHHHHhhhhhhH----------H----------
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFRESDEKGY----------Q---------- 150 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~-g~~~i~eif~~~ge~~f----------r---------- 150 (281)
+++.|+|+|++||||||+|+.|++. |++++|+|.+++... | .+ .+++..+ +..| .
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~-~~-~~i~~~~-~~~~~~g~i~~~~l~~~~~~~~~~~ 82 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAREN-KE-EELKRLF-PEAVVGGRLDRRALARLVFSDPERL 82 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHH-TH-HHHHHHC-GGGEETTEECHHHHHHHHTTSHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCC-hH-HHHHHHH-HHHHhCCCcCHHHHHHHHhCCHHHH
Confidence 4678999999999999999999998 999999999887655 4 22 2333222 1111 0
Q ss_pred -HHH--------HHHHHHHhcC-CCeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC-CCCCcChHHHHH
Q 023493 151 -QAE--------TEVLKQLSSM-GRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESEVLPQLF 217 (281)
Q Consensus 151 -~~e--------~~vl~~l~~~-~~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~~l~ 217 (281)
..+ ...+...... ..+||..+. .....++ .+ .+.+|||++|++++.+| ..| +.+.+ .+.
T Consensus 83 ~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~--~l~~~~~--~~~~d~~i~l~~~~e~~~~R~~~R~~~~~~----~~~ 154 (203)
T 1uf9_A 83 KALEAVVHPEVRRLLMEELSRLEAPLVFLEIP--LLFEKGW--EGRLHGTLLVAAPLEERVRRVMARSGLSRE----EVL 154 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCSEEEEECT--TTTTTTC--GGGSSEEEEECCCHHHHHHHHHTTTCCTTH----HHH
T ss_pred HHHHHHhChHHHHHHHHHhhhcCCCEEEEEec--ceeccCc--hhhCCEEEEEECCHHHHHHHHHHcCCCCHH----HHH
Confidence 001 0011111112 345555432 2222221 12 57999999999999999 555 33322 222
Q ss_pred HHHHHhhcc---ccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 218 ALYKEMRDG---YATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 218 ~~~~~r~~~---y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
..+..+.+. +..+|++|++ + .+++++++.|.+.+..+.
T Consensus 155 ~~i~~~~~~~~~~~~ad~vId~------------~-~~~~~~~~~i~~~~~~~~ 195 (203)
T 1uf9_A 155 ARERAQMPEEEKRKRATWVLEN------------T-GSLEDLERALKAVLAELT 195 (203)
T ss_dssp HHHTTSCCHHHHHHHCSEEECC------------S-SHHHHHHHHHHHHHHSCC
T ss_pred HHHHHCCChhHHHHhCCEEEEC------------C-CCHHHHHHHHHHHHHHHH
Confidence 222222222 2348888875 2 489999999998887554
No 52
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.53 E-value=8.3e-14 Score=121.51 Aligned_cols=110 Identities=13% Similarity=0.123 Sum_probs=69.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC-CC----ChHHHHHhhhhhhHHHHHHHHHHHHhcC--CCe
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GE----SAAKAFRESDEKGYQQAETEVLKQLSSM--GRL 166 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g-~~----~i~eif~~~ge~~fr~~e~~vl~~l~~~--~~~ 166 (281)
+.|+|+|+|||||||+++.|++.+|++++++|+++++... +. .+.+++. .|+..+.+....++...... +..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~g~~ 79 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETLESKGKDG 79 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHHhcccCCe
Confidence 4799999999999999999999999999999999887632 11 2233332 23333333333334333222 344
Q ss_pred EEEeCCceeechhhHHhc---------cCCcEEEEEcCHHHHHhh-hcCC
Q 023493 167 VVCAGNGAVQSSANLALL---------RHGISLWIDVPPGMVARM-DHSG 206 (281)
Q Consensus 167 VIa~G~g~v~~~~~~~~L---------~~~~vV~L~~s~e~l~~R-~~R~ 206 (281)
||..| +.........+ ..+.+|||++|++++.+| ..|+
T Consensus 80 vIlDg--~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 80 WLLDG--FPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp EEEES--CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred EEEeC--CcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 55443 22211111111 256899999999999999 5443
No 53
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.52 E-value=1.8e-14 Score=124.71 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=90.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHH------hCCCChH------HHHHhh----------------
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAA------KAFRES---------------- 144 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~------~g~~~i~------eif~~~---------------- 144 (281)
+..|+|+|++||||||+++.|++.+|++++|+|+++... .| .++. ++....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHH-VDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHT-CCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcC-CCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 468999999999999999999999999999999988743 23 3221 111111
Q ss_pred hh---hhHHHHHH----------HHHHHHhcCCCeEEEeCCceeechhhH--Hhcc-CCcEEEEEcCHHHHHhh--h---
Q 023493 145 DE---KGYQQAET----------EVLKQLSSMGRLVVCAGNGAVQSSANL--ALLR-HGISLWIDVPPGMVARM--D--- 203 (281)
Q Consensus 145 ge---~~fr~~e~----------~vl~~l~~~~~~VIa~G~g~v~~~~~~--~~L~-~~~vV~L~~s~e~l~~R--~--- 203 (281)
|. ..++..+. ..+.........+++.++|++++..++ ..++ .+++|||++|++++.+| .
T Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~~~~~~~d~~i~l~~~~e~~~~R~~~~l~ 163 (227)
T 1cke_A 84 GEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQ 163 (227)
T ss_dssp TEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHHHH
T ss_pred CeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccceEecCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 10 11211110 011111100000011122333222111 1233 68999999999999998 2
Q ss_pred cCCCC--CcChHHHHHH----HHH-HhhccccC-CcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 204 HSGFP--ESEVLPQLFA----LYK-EMRDGYAT-ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 204 ~R~r~--~~~~~~~l~~----~~~-~r~~~y~~-ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
.||+. .++..+.+.+ .+. .+.|.|.. ++++||+ ++.++++++++|.+.+.+++
T Consensus 164 ~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~------------~~~~~~ev~~~I~~~l~~~~ 224 (227)
T 1cke_A 164 VKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDS------------TTLSIEQVIEKALQYARQKL 224 (227)
T ss_dssp HHTCCCCHHHHHHHHC-------------CCCCTTCEEEET------------TTSCHHHHHHHHHHHHHHHH
T ss_pred hCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeC------------CCCCHHHHHHHHHHHHHHhh
Confidence 45652 2222223322 222 23555543 3488885 46899999999999987664
No 54
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.52 E-value=9.5e-14 Score=120.75 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=66.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC-C----ChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEE
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-E----SAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~-~----~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VI 168 (281)
|+|+|.|+|||||+|+|+.||+++|++++++++++++.... . .+..+. ..|...-.+.-..++.........+|
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~-~~G~lvpd~iv~~lv~~~l~~~~~~i 79 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYM-ERGELVPDDLIIALIEEVFPKHGNVI 79 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHH-HHTCCCCHHHHHHHHHHHCCSSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHH-hcCCcCCHHHHHHHHHHhhccCCceE
Confidence 57999999999999999999999999999999998764321 1 111211 22332222222223333323333333
Q ss_pred EeCCceeechhhHHhc---------cCCcEEEEEcCHHHHHhh
Q 023493 169 CAGNGAVQSSANLALL---------RHGISLWIDVPPGMVARM 202 (281)
Q Consensus 169 a~G~g~v~~~~~~~~L---------~~~~vV~L~~s~e~l~~R 202 (281)
-. |++........| ..+.+|+|++|.+++.+|
T Consensus 80 lD--GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~R 120 (206)
T 3sr0_A 80 FD--GFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIER 120 (206)
T ss_dssp EE--SCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred ec--CCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHH
Confidence 32 455443332222 146899999999999999
No 55
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.51 E-value=5.9e-14 Score=120.99 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=64.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC-CC----ChHHHHHhhhhhhHHHHHHHHHH-HHhc---CC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GE----SAAKAFRESDEKGYQQAETEVLK-QLSS---MG 164 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g-~~----~i~eif~~~ge~~fr~~e~~vl~-~l~~---~~ 164 (281)
+.|+|+|+|||||||+++.|++.+|+.++++|+++++... +. .+.+++.. |..........++. .+.. ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDK-GELVPDEVTIGIVKERLGKDDCER 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccccC
Confidence 4699999999999999999999999999999998877432 11 12222221 21111222122222 2221 22
Q ss_pred CeEEEeCCceeechhhHH----hcc-----CCcEEEEEcCHHHHHhh-hcC
Q 023493 165 RLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHS 205 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~----~L~-----~~~vV~L~~s~e~l~~R-~~R 205 (281)
.+|+ .| .+....... .+. .+.+|||++|++++.+| ..|
T Consensus 80 ~~il-dg--~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 80 GFLL-DG--FPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp CEEE-ES--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred CEEE-eC--CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 3344 33 222222111 221 46899999999999999 554
No 56
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.51 E-value=2.2e-13 Score=123.43 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=94.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhhh----------------hhHHH---
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDE----------------KGYQQ--- 151 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g--~~~i~eif~~~ge----------------~~fr~--- 151 (281)
+..|+|+|++||||||+|+.|+ .+|++++|+|.+.++.+. .....++....|. ..|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~ 153 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQ 153 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHH
Confidence 5689999999999999999999 689999999998765432 0111112111111 11111
Q ss_pred --------------HHHHHHHHHhcC-CCeEEEeCCceeechhhHHhccCCcEEEEEcCHHHHHhh-hcC-CCCCcChHH
Q 023493 152 --------------AETEVLKQLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLP 214 (281)
Q Consensus 152 --------------~e~~vl~~l~~~-~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~~s~e~l~~R-~~R-~r~~~~~~~ 214 (281)
.....+..+... ...||..|.. .....+.. ..+.+|||++|++++.+| ..| +++.++...
T Consensus 154 ~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~--l~~~~~~~-~~d~vI~l~a~~ev~~~Rl~~R~g~s~e~~~~ 230 (281)
T 2f6r_A 154 MKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAM--LLEAGWQS-MVHEVWTVVIPETEAVRRIVERDGLSEAAAQS 230 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTT--TTTTTGGG-GCSEEEEEECCHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEech--hhccchHH-hCCEEEEEcCCHHHHHHHHHHcCCCCHHHHHH
Confidence 001112222222 3567766642 22222210 168999999999999999 444 554322222
Q ss_pred HHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 215 QLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 215 ~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
.+..++.. ...+..||++|++ +.+++++..+|.+.+.++..
T Consensus 231 ri~~q~~~-~~~~~~AD~vIdn-------------~~s~eel~~~I~~~l~~l~~ 271 (281)
T 2f6r_A 231 RLQSQMSG-QQLVEQSNVVLST-------------LWESHVTQSQVEKAWNLLQK 271 (281)
T ss_dssp HHHTSCCH-HHHHHTCSEEEEC-------------SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCh-HhhHhhCCEEEEC-------------CCCHHHHHHHHHHHHHHHHH
Confidence 23222110 1122358999986 35999999999999987754
No 57
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.50 E-value=5.5e-13 Score=115.11 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=66.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHH------hCCCChHHHHHhhhhhhHHHHHHHHHHHHhcC---C
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKGYQQAETEVLKQLSSM---G 164 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~------~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~---~ 164 (281)
+.|+|+|+|||||||+++.|++.+|+.++++|+++++. .| ..+.+++.. |.....+....++...... .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g-~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~ 78 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELG-KQAKDIMDA-GKLVTDELVIALVKERIAQEDCR 78 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTT-GGGHHHHHH-TCCCCHHHHHHHHHHHHTSGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHH-HHHHHHHHC-CCcCCHHHHHHHHHHHHhccccC
Confidence 46999999999999999999999999999999998773 23 445555543 3211122212223222221 1
Q ss_pred CeEEEeCCceeechhhHHhcc-----CCcEEEEEcCHHHHHhh
Q 023493 165 RLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM 202 (281)
Q Consensus 165 ~~VIa~G~g~v~~~~~~~~L~-----~~~vV~L~~s~e~l~~R 202 (281)
..+|..| +.........+. .+.+|||++|++++.+|
T Consensus 79 ~~~i~dg--~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R 119 (214)
T 1e4v_A 79 NGFLLDG--FPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119 (214)
T ss_dssp GCEEEES--CCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHH
T ss_pred CCEEEeC--CCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 2244443 222222222232 47899999999999999
No 58
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.50 E-value=8.7e-14 Score=117.44 Aligned_cols=161 Identities=16% Similarity=0.125 Sum_probs=84.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh---CCceecCchHHHHHhCCCChHHHHHhhh-----hhh-HHHHHHHHHHHH---h
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFRESD-----EKG-YQQAETEVLKQL---S 161 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l---~~~~~d~D~li~~~~g~~~i~eif~~~g-----e~~-fr~~e~~vl~~l---~ 161 (281)
+.|+|+|++||||||+++.|++.+ |+.++.++.-.....| ..+.+++.... +.. |.......+..+ .
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~l 79 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETG-EKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHH-HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999 9998865431000001 11122221100 000 100011112222 1
Q ss_pred cCCCeEEEeC----------CceeechhhHHh--------ccCCcEEEEEcCHHHHHhh-hcCCCCCc-ChHHHHHHHHH
Q 023493 162 SMGRLVVCAG----------NGAVQSSANLAL--------LRHGISLWIDVPPGMVARM-DHSGFPES-EVLPQLFALYK 221 (281)
Q Consensus 162 ~~~~~VIa~G----------~g~v~~~~~~~~--------L~~~~vV~L~~s~e~l~~R-~~R~r~~~-~~~~~l~~~~~ 221 (281)
..+..|++.. .+.......... ..++.+|||++|++++.+| ..|++... +....+...|.
T Consensus 80 ~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~ 159 (197)
T 2z0h_A 80 SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERVREGYL 159 (197)
T ss_dssp ---CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCCCCHHHHHHHHHHHH
T ss_pred hCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence 2344566542 111111111111 1268999999999999999 66665432 22334444455
Q ss_pred HhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 222 EMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 222 ~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
+....+....++||+ +.++++++++|.+.+.+++
T Consensus 160 ~~~~~~~~~~~~Id~-------------~~~~e~~~~~i~~~l~~~l 193 (197)
T 2z0h_A 160 VLAREHPERIVVLDG-------------KRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp HHHHHCTTTEEEEET-------------TSCHHHHHHHHHHHTTCC-
T ss_pred HHHHhCCCCEEEEeC-------------CCCHHHHHHHHHHHHHHHh
Confidence 444334334467875 5799999999999887654
No 59
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.50 E-value=1.8e-13 Score=116.99 Aligned_cols=165 Identities=14% Similarity=0.118 Sum_probs=90.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHH----HhCCCChHHHHHhhh------h-hhHHHHHH---HHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE----AAGGESAAKAFRESD------E-KGYQQAET---EVL 157 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~----~~g~~~i~eif~~~g------e-~~fr~~e~---~vl 157 (281)
+++.|+|+|+|||||||+++.|++.++..+++.+.+.+. ..| ..+.++|...+ . ..|..... ..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i 86 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIG-KLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI 86 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHH-HHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999987665554322110 000 11122222100 0 00100000 123
Q ss_pred HHHhcCCCeEEEeCC---cee-------echhhHHhc-----cCCcEEEEEcCHHHHHhh-hcC-CCCC-cChHHHHHHH
Q 023493 158 KQLSSMGRLVVCAGN---GAV-------QSSANLALL-----RHGISLWIDVPPGMVARM-DHS-GFPE-SEVLPQLFAL 219 (281)
Q Consensus 158 ~~l~~~~~~VIa~G~---g~v-------~~~~~~~~L-----~~~~vV~L~~s~e~l~~R-~~R-~r~~-~~~~~~l~~~ 219 (281)
......+..||.+.. +.+ ........+ ..+.+|||++|++++.+| .++ ++.. .+....+...
T Consensus 87 ~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~~~~~~~~~ 166 (215)
T 1nn5_A 87 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRC 166 (215)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHHHHHHHHHH
T ss_pred HHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHHHHHHHHHH
Confidence 333334556776521 000 111222222 257899999999999999 433 2221 1223445555
Q ss_pred HHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhh
Q 023493 220 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRK 270 (281)
Q Consensus 220 ~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~ 270 (281)
|.++...+....++||+ +.++++++++|.+.+.+++..
T Consensus 167 ~~~~~~~~~~~~~~Id~-------------~~~~e~~~~~i~~~l~~~l~~ 204 (215)
T 1nn5_A 167 FHQLMKDTTLNWKMVDA-------------SKSIEAVHEDIRVLSEDAIAT 204 (215)
T ss_dssp HHHHTTCTTSCEEEEET-------------TSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEC-------------CCCHHHHHHHHHHHHHHHHhh
Confidence 65554433223467874 579999999999999887764
No 60
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.49 E-value=6.1e-14 Score=119.19 Aligned_cols=160 Identities=9% Similarity=0.055 Sum_probs=92.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-CCceecCchHH-HHHhCCCChHHHHHhhhh-----h--hHHH--H-HHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLV-FEAAGGESAAKAFRESDE-----K--GYQQ--A-ETEVLKQ 159 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l-~~~~~d~D~li-~~~~g~~~i~eif~~~ge-----~--~fr~--~-e~~vl~~ 159 (281)
+|+.|+|+|++||||||+++.|++.+ |+++++.+... ....| ..+.++|...+. . .|.. . ....+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g-~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~ 81 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTG-KMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQE 81 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHH-HHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999 68888765322 11111 123333322110 0 0000 0 0012233
Q ss_pred HhcCCCeEEEeC-----------CceeechhhHHh-----ccCCcEEEEEcCHHHHHhhhcCCCC-Cc--ChHHHHHHHH
Q 023493 160 LSSMGRLVVCAG-----------NGAVQSSANLAL-----LRHGISLWIDVPPGMVARMDHSGFP-ES--EVLPQLFALY 220 (281)
Q Consensus 160 l~~~~~~VIa~G-----------~g~v~~~~~~~~-----L~~~~vV~L~~s~e~l~~R~~R~r~-~~--~~~~~l~~~~ 220 (281)
....+..||..+ +|.. ...... ..++.+|||++|++++.+ .|+.. .+ +....+...|
T Consensus 82 ~l~~~~~vi~Dr~~~s~~~~~~~~g~~--~~~~~~~~~~~~~~d~vi~l~~~~e~~~~--~R~~d~~e~~~~~~rl~~~y 157 (204)
T 2v54_A 82 QLEQGITLIVDRYAFSGVAYAAAKGAS--MTLSKSYESGLPKPDLVIFLESGSKEINR--NVGEEIYEDVTFQQKVLQEY 157 (204)
T ss_dssp HHHTTCEEEEESCHHHHHHHHHHTTCC--HHHHHHHHTTSBCCSEEEEECCCHHHHTT--CCSSSTTCCSHHHHHHHHHH
T ss_pred HHHCCCEEEEECchhhHHHHHHccCCC--HHHHHHHhcCCCCCCEEEEEeCCHHHHHh--hcCcccccHHHHHHHHHHHH
Confidence 333455677543 1211 111111 126899999999998877 33221 11 3345566666
Q ss_pred HHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 221 KEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 221 ~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
.+....|....++||+ +.++++++++|.+.+.+.+.
T Consensus 158 ~~~~~~~~~~~~~Id~-------------~~~~~~v~~~i~~~l~~~l~ 193 (204)
T 2v54_A 158 KKMIEEGDIHWQIISS-------------EFEEDVKKELIKNIVIEAIH 193 (204)
T ss_dssp HHHHTTCSSCEEEECT-------------TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEEEC-------------CCCHHHHHHHHHHHHHHHHh
Confidence 6655444333467764 58999999999999987765
No 61
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.49 E-value=1.8e-14 Score=127.93 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=91.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCc----------eecCchHHHHHhCCCChHHHHHhhhhhhHHHH-------HH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----------YFDSDSLVFEAAGGESAAKAFRESDEKGYQQA-------ET 154 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~----------~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~-------e~ 154 (281)
+...|+|+|++||||||+|+.|++.+|++ ++|+|++++.... ..+. +...|...|... -.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~-~~~~--~~~~g~~~f~~~~~~d~~~l~ 97 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTS-EQKA--KALKGQFNFDHPDAFDNELIL 97 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCH-HHHH--HHHTTCSCTTSGGGBCHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccCh-hhhh--hhccCCCCCCCcchhhHHHHH
Confidence 45689999999999999999999999988 6899998742110 0010 111121111111 11
Q ss_pred HHHHHHhc------------------------CCCeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcC---
Q 023493 155 EVLKQLSS------------------------MGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS--- 205 (281)
Q Consensus 155 ~vl~~l~~------------------------~~~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R--- 205 (281)
+.|..+.. ....||..|... .....+ .. .+.+|||++|++++.+| ..|
T Consensus 98 ~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~-~~~~~~--~~~~d~vi~l~~~~e~~~~R~~~R~~~ 174 (252)
T 1uj2_A 98 KTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILA-FYSQEV--RDLFQMKLFVDTDADTRLSRRVLRDIS 174 (252)
T ss_dssp HHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTT-TSSHHH--HHHCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeecc-ccCHHH--HHhcCeeEEEeCCHHHHHHHHHHHHHh
Confidence 34555432 123455554211 111111 12 58999999999999999 433
Q ss_pred --CCCCcChHHHHHHH----HHHh-hccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 206 --GFPESEVLPQLFAL----YKEM-RDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 206 --~r~~~~~~~~l~~~----~~~r-~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
+++.++....+... +.+. .+.+..||++|+.. .|+ +.++++++++|.+.+...+
T Consensus 175 ~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~--------id~-~~s~e~v~~~I~~~l~~~~ 235 (252)
T 1uj2_A 175 ERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRG--------ADN-LVAINLIVQHIQDILNGGP 235 (252)
T ss_dssp HSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETG--------GGC-HHHHHHHHHHHHHHHHC--
T ss_pred hhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecC--------CCC-hhHHHHHHHHHHHHHccch
Confidence 44432222233221 1111 13445689998321 123 5789999999998887554
No 62
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.49 E-value=3.6e-14 Score=122.44 Aligned_cols=156 Identities=13% Similarity=0.220 Sum_probs=94.6
Q ss_pred hcccCCcEEEEEccCCCCHHHHHHHHHHHhC------CceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHh
Q 023493 88 STELKGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLS 161 (281)
Q Consensus 88 ~~~~~~~~i~l~G~~GsGKstvak~La~~l~------~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~ 161 (281)
....+|+.|+|+|++||||||+++.|++.++ +.++|.|.+.....+.. .++...++..++.... ++..+.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~---~~~~~~r~~~~~~~~~-~~~~~l 95 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDL---GFSEADRNENIRRIAE-VAKLFA 95 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTC---CSSHHHHHHHHHHHHH-HHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcccc---CCCHHHHHHHHHHHHH-HHHHHH
Confidence 3345689999999999999999999999886 77888777653322101 1122334445554432 233444
Q ss_pred cCCCeEEEeCCceeechhhHHhc----c----------CCcEEEEEcCHHHHHhhhcCCCCCcChHHHHHH----HHHHh
Q 023493 162 SMGRLVVCAGNGAVQSSANLALL----R----------HGISLWIDVPPGMVARMDHSGFPESEVLPQLFA----LYKEM 223 (281)
Q Consensus 162 ~~~~~VIa~G~g~v~~~~~~~~L----~----------~~~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~----~~~~r 223 (281)
..+..||++.. . ....+++.+ . ++.+|||++|++++.+|..| + .....+. .+..+
T Consensus 96 ~~g~~VI~d~~-~-~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r--~---~~~~~r~~~~~~~~~~ 168 (211)
T 1m7g_A 96 DSNSIAITSFI-S-PYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPK--G---LYKKAREGVIKEFTGI 168 (211)
T ss_dssp HTTCEEEEECC-C-CCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTT--C---HHHHHHHTSSSSCBTT
T ss_pred HCCCEEEEecC-C-ccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhH--H---HHHHHHhcchhhhhhh
Confidence 45567776632 2 212222222 1 25899999999999999422 1 1111111 11123
Q ss_pred hcccc---CCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 224 RDGYA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 224 ~~~y~---~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
.+.|+ .++++||+ ++.++++++++|++.+..
T Consensus 169 ~~~y~~~~~~~~~IDt------------~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 169 SAPYEAPANPEVHVKN------------YELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp TBCCCCCSSCSEEEEC------------SSSCHHHHHHHHHHHHHH
T ss_pred hhhccCCCCCeEEEEC------------CCCCHHHHHHHHHHHHHH
Confidence 34454 36788885 466999999999998864
No 63
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.48 E-value=3.6e-13 Score=119.21 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=67.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCC-CC----hHHHHHhhhhhhHHHHHHHHHHHHhcC--
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES----AAKAFRESDEKGYQQAETEVLKQLSSM-- 163 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~-~~----i~eif~~~ge~~fr~~e~~vl~~l~~~-- 163 (281)
-+++.|+|+|+|||||||+++.|++.+|+.++++|+++++.... .. +.+++.. |.....+.-...+......
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~ 105 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINE-GKLVDDQMVLSLVDEKLKTPQ 105 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTTSGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhccc
Confidence 36789999999999999999999999999999999998875431 11 2222222 2111111111222222211
Q ss_pred -CCeEEEeCCceeechhhHHh----c-----cCCcEEEEEcCHHHHHhh-hcC
Q 023493 164 -GRLVVCAGNGAVQSSANLAL----L-----RHGISLWIDVPPGMVARM-DHS 205 (281)
Q Consensus 164 -~~~VIa~G~g~v~~~~~~~~----L-----~~~~vV~L~~s~e~l~~R-~~R 205 (281)
...+|..| .+........ + ..+.+|||++|++++.+| .+|
T Consensus 106 ~~~~~ildg--~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R 156 (243)
T 3tlx_A 106 CKKGFILDG--YPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGR 156 (243)
T ss_dssp GSSEEEEES--CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred ccCCEEecC--CCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcC
Confidence 23334333 3222222211 2 257899999999999999 544
No 64
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.48 E-value=3.4e-12 Score=108.53 Aligned_cols=159 Identities=13% Similarity=0.160 Sum_probs=87.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCc--eecCchHHHHHhCCCChHHHHHhhh------h---h-h-----HHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVFEAAGGESAAKAFRESD------E---K-G-----YQQAE 153 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~--~~d~D~li~~~~g~~~i~eif~~~g------e---~-~-----fr~~e 153 (281)
++++.|+|+|+|||||||+++.|++.++.. ++..+.- .| ..+.+++...+ . . . +...+
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~----~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 76 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWN----SS-DWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYE 76 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETT----CC-CHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCC----cH-HHHHHHHhccccccCCCHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999874 4442111 11 22222222110 0 0 0 00011
Q ss_pred HHHHHHHhcCCCeEEEeCCcee---------echhhHHhc----c-CCcEEEEEcCHHHHHhh-h-cCCC--CC------
Q 023493 154 TEVLKQLSSMGRLVVCAGNGAV---------QSSANLALL----R-HGISLWIDVPPGMVARM-D-HSGF--PE------ 209 (281)
Q Consensus 154 ~~vl~~l~~~~~~VIa~G~g~v---------~~~~~~~~L----~-~~~vV~L~~s~e~l~~R-~-~R~r--~~------ 209 (281)
..+......+..||..+.-.. ........+ . .+++|||++|++++.+| . +|+. ..
T Consensus 77 -~~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~ 155 (213)
T 2plr_A 77 -RYILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADI 155 (213)
T ss_dssp -HTHHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTT
T ss_pred -HHHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccccccccc
Confidence 112222334566776542100 001111111 2 57899999999999999 6 6752 10
Q ss_pred ---cChH-------HHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhh
Q 023493 210 ---SEVL-------PQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRK 270 (281)
Q Consensus 210 ---~~~~-------~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~ 270 (281)
.+.. ..+...|.+....| ..++||+ +.++++++++|.+.+.+++..
T Consensus 156 ~~~~d~~e~~~~~~~r~~~~~~~~~~~~--~~~~Id~-------------~~~~e~v~~~I~~~l~~~~~~ 211 (213)
T 2plr_A 156 FPGLSPEEGFLKYQGLITEVYDKLVKDE--NFIVIDG-------------TKTPKEIQIQIRKFVGELIDN 211 (213)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTT--TCEEEET-------------TSCHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHhhC--CEEEEEC-------------CCCHHHHHHHHHHHHHHHhhc
Confidence 0101 11122222222111 4578885 479999999999999876643
No 65
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.48 E-value=1e-13 Score=115.13 Aligned_cols=155 Identities=12% Similarity=0.132 Sum_probs=79.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHH-HhCCceecCchHHHHHhCCCChH--HHHHhhhhhhHHHHHHHHHHHHh---cCCCeE
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD-ALRYYYFDSDSLVFEAAGGESAA--KAFRESDEKGYQQAETEVLKQLS---SMGRLV 167 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~-~l~~~~~d~D~li~~~~g~~~i~--eif~~~ge~~fr~~e~~vl~~l~---~~~~~V 167 (281)
+.|+|+|+|||||||+++.|++ .+|+.++++|.+.....+ .+.. ..+...++..+.+.....+.... ..+..|
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~v 81 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGV 81 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhC-CCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCeE
Confidence 5799999999999999999999 789999999988776655 2111 01122234444444444555555 444555
Q ss_pred EEeCCceeechhhHH----hcc-CC---cEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhccccCCcEEEEcCc
Q 023493 168 VCAGNGAVQSSANLA----LLR-HG---ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQK 238 (281)
Q Consensus 168 Ia~G~g~v~~~~~~~----~L~-~~---~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~y~~ad~~Id~~~ 238 (281)
|..+. ......+. .++ .+ .+|||++|++++.+| ..|+... ...+.+.++++.+.+......++||.
T Consensus 82 i~d~~--~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~-~~~~~i~~~~~~~~~~~~~~~~~id~-- 156 (181)
T 1ly1_A 82 IISDT--NLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKA-VPIDVLRSMYKSMREYLGLPVYNGTP-- 156 (181)
T ss_dssp EECSC--CCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGC-CCHHHHHHHHHHHHHHHTCCCC------
T ss_pred EEeCC--CCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCC-CCHHHHHHHHHHhhccCCCCccccCC--
Confidence 55432 22222222 122 22 689999999999999 6665311 12344555554443322222355653
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 239 VASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 239 ~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
+. |++++..|...+..
T Consensus 157 -----------~~-~~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 157 -----------GK-PKAVIFDVDGTLAK 172 (181)
T ss_dssp ----------------------------
T ss_pred -----------CC-Cceeeehhhhhhhc
Confidence 22 46666666655543
No 66
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.47 E-value=1.6e-14 Score=121.90 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=88.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~ 165 (281)
.++..|+|+|+|||||||+++.|++.++ +.++|.|.+.....+..... .......+... ..+...+...+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~r~~~~~~~-~~~~~~~~~~g~ 86 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFT---REERLRHLKRI-AWIARLLARNGV 86 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCC---HHHHHHHHHHH-HHHHHHHHTTTC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCC---hhhHHHHHHHH-HHHHHHHHhCCC
Confidence 4688999999999999999999999885 35678877654333211110 01111112111 111222333444
Q ss_pred eEEEeCCceee---chhhHHhcc----CCcEEEEEcCHHHHHhh-hcCC--CCCcChHHHHHHHHHHhhcccc---CCcE
Q 023493 166 LVVCAGNGAVQ---SSANLALLR----HGISLWIDVPPGMVARM-DHSG--FPESEVLPQLFALYKEMRDGYA---TADV 232 (281)
Q Consensus 166 ~VIa~G~g~v~---~~~~~~~L~----~~~vV~L~~s~e~l~~R-~~R~--r~~~~~~~~l~~~~~~r~~~y~---~ad~ 232 (281)
.|++.+. ... ....+.++. .+.+|||++|++++.+| ..+. +...+ .+..++..+.. |. .+++
T Consensus 87 ~vi~d~~-~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~---~~~~~~~~~~~-y~~~~~~~~ 161 (186)
T 2yvu_A 87 IVICSFV-SPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKG---ELENFTGITDP-YEPPENPQL 161 (186)
T ss_dssp EEEEECC-CCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTT---CCSSCHHHHSC-CCCCSSCSE
T ss_pred EEEEeCc-cccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhc---chhhhhhhhhc-ccCCCCCcE
Confidence 5554432 211 111222333 36899999999999999 3210 00000 00111222332 54 4788
Q ss_pred EEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 233 ~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
+||+ ++.++++++++|++.+.+++
T Consensus 162 ~Id~------------~~~~~~ev~~~I~~~l~~~~ 185 (186)
T 2yvu_A 162 VLDT------------ESNTIEHNVSYLYSLVKAVI 185 (186)
T ss_dssp EEET------------TTSCHHHHHHHHHHHHHHHC
T ss_pred EEEC------------CCCCHHHHHHHHHHHHHHhc
Confidence 8985 46899999999999987653
No 67
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.44 E-value=2e-13 Score=136.35 Aligned_cols=160 Identities=16% Similarity=0.257 Sum_probs=98.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh---CCceecCchHHHHHhCCCChHHHHH-hhhhhhHHHHHHHHHHHHhcCCCe
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFR-ESDEKGYQQAETEVLKQLSSMGRL 166 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l---~~~~~d~D~li~~~~g~~~i~eif~-~~ge~~fr~~e~~vl~~l~~~~~~ 166 (281)
.+++.|+|+|+|||||||+|+.|++.| |++++++|....+. + ......|. ..++..|+.+. +++..+...+..
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~-~-L~~~~~fs~~dree~~r~i~-eva~~~l~~G~i 126 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-G-LNKNLGFSPEDREENVRRIA-EVAKLFADAGLV 126 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT-T-TTTTCCSSHHHHHHHHHHHH-HHHHHHHHTTCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh-c-cCccccCChhhhHHHHHHHH-HHHHHHHhCCCE
Confidence 578899999999999999999999999 99888776433221 2 22112233 34666776653 344444444555
Q ss_pred EEEeCCceee---chhhHHhcc-C---CcEEEEEcCHHHHHhhhcCCCCCcChHHHHHHHHHHhhcccc---CCcEEEEc
Q 023493 167 VVCAGNGAVQ---SSANLALLR-H---GISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA---TADVTVSL 236 (281)
Q Consensus 167 VIa~G~g~v~---~~~~~~~L~-~---~~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~~~r~~~y~---~ad~~Id~ 236 (281)
|++. .+.+. ....+.+++ . .++|||++|++++.+|..++.... .+......+..+.+.|+ .++++||+
T Consensus 127 VI~d-~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~-aR~~~~~~~~~~~~~Ye~p~~~dlvIDt 204 (630)
T 1x6v_B 127 CITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKK-ARAGEIKGFTGIDSEYEKPEAPELVLKT 204 (630)
T ss_dssp EEEE-CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHH-HTTC----CBTTTBCCCCCSSCSEEEET
T ss_pred EEEe-CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchh-hhhhhHHHHHHhhhhhcccCCCcEEEEC
Confidence 5543 22222 122333443 2 369999999999999932221000 00000112344566775 47899985
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 237 QKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 237 ~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
++.++++++++|++.+...
T Consensus 205 ------------s~~s~eevv~~Il~~L~~~ 223 (630)
T 1x6v_B 205 ------------DSCDVNDCVQQVVELLQER 223 (630)
T ss_dssp ------------TSSCHHHHHHHHHHHHHHT
T ss_pred ------------CCCCHHHHHHHHHHHHHhc
Confidence 5789999999999998753
No 68
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.44 E-value=6.1e-12 Score=111.46 Aligned_cols=156 Identities=20% Similarity=0.251 Sum_probs=89.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh------CCCChH------HHHHhh---------------
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAA------KAFRES--------------- 144 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~------g~~~i~------eif~~~--------------- 144 (281)
++..|+|+|++||||||+++.|++.+|+.++|.|.+++... | .+.. ++....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l 86 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAG-ADLTDPAAIEKAAADAEIGVGSDPDVDAAFL 86 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHT-CCTTCHHHHHHHHHTCCEEECCCTTSCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcC-CCchhhHHHHHHHHhCCEEEeecCCCcEEEE
Confidence 45789999999999999999999999999999999876532 2 2211 111110
Q ss_pred -h---------------------hhhHHHHHHHHHHHHhcC-CCeEEEeCC--ceeechhhHHhcc-CCcEEEEEcCHHH
Q 023493 145 -D---------------------EKGYQQAETEVLKQLSSM-GRLVVCAGN--GAVQSSANLALLR-HGISLWIDVPPGM 198 (281)
Q Consensus 145 -g---------------------e~~fr~~e~~vl~~l~~~-~~~VIa~G~--g~v~~~~~~~~L~-~~~vV~L~~s~e~ 198 (281)
| ....++.-.+....+... +.+|+. |- |.+ .++ .++.|||++|+++
T Consensus 87 ~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~-GRd~gt~-------V~pda~lkifl~A~~e~ 158 (233)
T 3r20_A 87 AGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVE-GRDIGTV-------VLPDADVKIFLTASAEE 158 (233)
T ss_dssp TTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEE-ESSCCCC-------CCTTCSEEEEEECCHHH
T ss_pred CCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEe-cccceeE-------EcCCCCEEEEEECCHHH
Confidence 0 000111111112233334 444443 31 222 233 5699999999999
Q ss_pred HHhh--h---cCCC--CCcChHHHHHHHHHHhhccc----cCCc--EEEEcCccccccccCCCCCCCHHHHHHHHHHHHH
Q 023493 199 VARM--D---HSGF--PESEVLPQLFALYKEMRDGY----ATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 265 (281)
Q Consensus 199 l~~R--~---~R~r--~~~~~~~~l~~~~~~r~~~y----~~ad--~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~ 265 (281)
+++| . .++. +.++....+...-..+...| ..++ ++|| |++++++++++.|++.++
T Consensus 159 Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~ID------------Ts~l~iee~v~~I~~~i~ 226 (233)
T 3r20_A 159 RARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVD------------TSDMDQAQVIAHLLDLVT 226 (233)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEE------------CTTSCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEE------------CCCCCHHHHHHHHHHHHH
Confidence 9998 2 1333 23333334433222221112 2343 7887 579999999999999887
Q ss_pred HHH
Q 023493 266 KLT 268 (281)
Q Consensus 266 ~~~ 268 (281)
+.+
T Consensus 227 ~~~ 229 (233)
T 3r20_A 227 AQA 229 (233)
T ss_dssp ---
T ss_pred Hhh
Confidence 543
No 69
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.43 E-value=5.3e-13 Score=114.04 Aligned_cols=157 Identities=21% Similarity=0.320 Sum_probs=88.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH------------HHHHhC-C--CC---hHHHHHhhhhhhHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL------------VFEAAG-G--ES---AAKAFRESDEKGYQQA 152 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l------------i~~~~g-~--~~---i~eif~~~ge~~fr~~ 152 (281)
.+++.|+|+|+|||||||+++.|++.++..++++|.+ +.+.+. + .+ ...+|...++..++
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 85 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN-- 85 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH--
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH--
Confidence 3578999999999999999999999998777666321 111111 0 11 11222222222221
Q ss_pred HHHHHHHHhcCCCeEEEeCC---ceeechh------hH-Hh----c-cCCcEEEEEcCHHHHHhh-hcC-CCCC-cChHH
Q 023493 153 ETEVLKQLSSMGRLVVCAGN---GAVQSSA------NL-AL----L-RHGISLWIDVPPGMVARM-DHS-GFPE-SEVLP 214 (281)
Q Consensus 153 e~~vl~~l~~~~~~VIa~G~---g~v~~~~------~~-~~----L-~~~~vV~L~~s~e~l~~R-~~R-~r~~-~~~~~ 214 (281)
.+......+..||..+. +.+.... .+ .. + ..+.+|||++|++++.+| .+| ++.. .+...
T Consensus 86 ---~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~~~~~~ 162 (212)
T 2wwf_A 86 ---EIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQK 162 (212)
T ss_dssp ---HHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCSHHHHH
T ss_pred ---HHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccHHHHHH
Confidence 12222233455666432 1111110 11 11 1 267899999999999999 443 3322 11222
Q ss_pred HHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 215 QLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 215 ~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
.+...|.+... ..++++||+ +.++++++++|.+.+.++
T Consensus 163 ~~~~~~~~~~~--~~~~~~Id~-------------~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 163 KIYETYKHFAH--EDYWINIDA-------------TRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp HHHHHGGGGTT--CTTEEEEEC-------------SSCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhc--cCCEEEEEC-------------CCCHHHHHHHHHHHHHHh
Confidence 33333433322 236788885 479999999999988654
No 70
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.42 E-value=3.8e-13 Score=112.73 Aligned_cols=156 Identities=13% Similarity=0.208 Sum_probs=85.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh---CCceecCchHHHH-HhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCe
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFE-AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l---~~~~~d~D~li~~-~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (281)
.+|..|+|+|++||||||+++.|++.+ |+++++.|..... ... .... +....++..|++.+.. ...+... ..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~-~~~~~~~-~~ 78 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN-KNLG-FSPEDREENVRRIAEV-AKLFADA-GL 78 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT-TTCC-SSHHHHHHHHHHHHHH-HHHHHHT-TC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHh-hccc-cccccHHHHHHHHHHH-HHHHHHC-CC
Confidence 368899999999999999999999988 9888865533221 111 0000 0112244555554421 1112222 33
Q ss_pred EEEeCCce-ee---chhhHHhcc-C---CcEEEEEcCHHHHHhh-hcCCCCCcChH-HHHHHHHHHhhcccc---CCcEE
Q 023493 167 VVCAGNGA-VQ---SSANLALLR-H---GISLWIDVPPGMVARM-DHSGFPESEVL-PQLFALYKEMRDGYA---TADVT 233 (281)
Q Consensus 167 VIa~G~g~-v~---~~~~~~~L~-~---~~vV~L~~s~e~l~~R-~~R~r~~~~~~-~~l~~~~~~r~~~y~---~ad~~ 233 (281)
++.++ +. +. ....+.+++ . +++|||++|++++.+| .++... +.. ..+.. +....+.|+ .+|++
T Consensus 79 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~ad~v 154 (179)
T 2pez_A 79 VCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYK--KARAGEIKG-FTGIDSEYEKPEAPELV 154 (179)
T ss_dssp EEEEE-CCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHH--HHHTTSSCS-CBTTTBCCCCCSSCSEE
T ss_pred EEEEe-cCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHH--HHhcccccc-cccCCccccCCCCCcEE
Confidence 33332 22 21 112222332 2 3789999999999999 432000 000 00000 000112232 47889
Q ss_pred EEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 234 VSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 234 Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
|++ ++.++++++++|.+.+.+
T Consensus 155 id~------------~~~~~~~~~~~i~~~l~~ 175 (179)
T 2pez_A 155 LKT------------DSCDVNDCVQQVVELLQE 175 (179)
T ss_dssp EET------------TTSCHHHHHHHHHHHHHH
T ss_pred EEC------------CCCCHHHHHHHHHHHHHH
Confidence 885 467999999999988764
No 71
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.41 E-value=1.8e-12 Score=110.80 Aligned_cols=150 Identities=16% Similarity=0.242 Sum_probs=87.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh---CCc--eecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l---~~~--~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~ 165 (281)
-+|..|+|+|++||||||+++.|++.+ |.. ++|.|.+......+... ..+.....++.. ..+...+...+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~ 98 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSF---KAEDRAENIRRV-GEVAKLFADAGI 98 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCS---SHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCc---ChHHHHHHHHHH-HHHHHHHHhCCc
Confidence 468999999999999999999999998 666 89988875422110100 001111222221 122333333445
Q ss_pred eEEEeCCceeechhhHHhc----cC--CcEEEEEcCHHHHHhhhcC--------CCCCcChHHHHHHHHHHhhcccc---
Q 023493 166 LVVCAGNGAVQSSANLALL----RH--GISLWIDVPPGMVARMDHS--------GFPESEVLPQLFALYKEMRDGYA--- 228 (281)
Q Consensus 166 ~VIa~G~g~v~~~~~~~~L----~~--~~vV~L~~s~e~l~~R~~R--------~r~~~~~~~~l~~~~~~r~~~y~--- 228 (281)
.++.+..+. ....+..+ .. .++|||++|++++.+|..+ +... .. .. ....|+
T Consensus 99 ~vi~~~~~~--~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~-~~-~~-------~~~~~~~~~ 167 (200)
T 3uie_A 99 ICIASLISP--YRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIK-GF-TG-------IDDPYEPPL 167 (200)
T ss_dssp EEEEECCCC--CHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSC-SC-BT-------TTBCCCCCS
T ss_pred eEEEecCCc--hHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCC-CC-CC-------CCCcCcCCC
Confidence 555543222 22333322 22 2569999999999999211 1111 00 00 112343
Q ss_pred CCcEEEEcCccccccccCCCCC-CCHHHHHHHHHHHHHHH
Q 023493 229 TADVTVSLQKVASQLGYDDLDA-VTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 229 ~ad~~Id~~~~a~~l~~~dts~-~speeva~~Il~~i~~~ 267 (281)
.++++||+ ++ +++++++++|++.+.+.
T Consensus 168 ~~~~~idt------------~~~~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 168 NCEISLGR------------EGGTSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp SCSEEECC------------SSCCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEec------------CCCCCHHHHHHHHHHHHHHc
Confidence 36788874 57 79999999999988653
No 72
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.40 E-value=6.6e-12 Score=110.45 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=90.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC--CceecCc--------hHHHHHhCCCChHHHHHhhhhh-hHHHHHHH----
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSD--------SLVFEAAGGESAAKAFRESDEK-GYQQAETE---- 155 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~--~~~~d~D--------~li~~~~g~~~i~eif~~~ge~-~fr~~e~~---- 155 (281)
.+|+.|+|+|++||||||+++.|++.++ +.++.+. ..+.+.+.... .+....+. .|......
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~---~~~~~~~~ll~~a~r~~~~~~ 100 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGN---DMDIRTEAMLFAASRREHLVL 100 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC------CCHHHHHHHHHHHHHHHCCC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999986 4544321 12222221000 00000000 01000000
Q ss_pred HHHHHhcCCCeEEEe----------CCceeechhhHH--------hccCCcEEEEEcCHHHHHhh-hcCCCC----CcC-
Q 023493 156 VLKQLSSMGRLVVCA----------GNGAVQSSANLA--------LLRHGISLWIDVPPGMVARM-DHSGFP----ESE- 211 (281)
Q Consensus 156 vl~~l~~~~~~VIa~----------G~g~v~~~~~~~--------~L~~~~vV~L~~s~e~l~~R-~~R~r~----~~~- 211 (281)
.+......+..||+. |.+--+....+. .+.++.+|||++|++++.+| .+|++. ..+
T Consensus 101 ~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~ 180 (229)
T 4eaq_A 101 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQED 180 (229)
T ss_dssp CCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHH
T ss_pred HHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhh
Confidence 112222345677776 432222222111 12368999999999999999 666533 111
Q ss_pred --hHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 212 --VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 212 --~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
....+...|.+....|....++||. +.+++++.++|.+.+.+++.
T Consensus 181 ~~~~~rv~~~y~~l~~~~~~~~~vIDa-------------~~s~eev~~~I~~~l~~~l~ 227 (229)
T 4eaq_A 181 LKFHEKVIEGYQEIIHNESQRFKSVNA-------------DQPLENVVEDTYQTIIKYLE 227 (229)
T ss_dssp HHHHHHHHHHHHHHTTTCTTTEEEEET-------------TSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeC-------------CCCHHHHHHHHHHHHHHHhc
Confidence 1233444454444334323467874 58999999999999988764
No 73
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.39 E-value=1.5e-12 Score=115.16 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=70.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhC-C----CChHHHHHhhhhhhHHHHHHHHHHH-Hhc---
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLKQ-LSS--- 162 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g-~----~~i~eif~~~ge~~fr~~e~~vl~~-l~~--- 162 (281)
..+.+.|+|+|||||||+|+.|++.+|++++++++++++... + ..+.+++. .|.....+....++.. +..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l~~~~~ 85 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERLKEADC 85 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHSGGG
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHHhCccc
Confidence 357899999999999999999999999999999999877421 1 22333333 2443344433333333 222
Q ss_pred CCCeEEEeCCceeechhhHHhcc-----CCcEEEEEcCHHHHHhh-hcC
Q 023493 163 MGRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHS 205 (281)
Q Consensus 163 ~~~~VIa~G~g~v~~~~~~~~L~-----~~~vV~L~~s~e~l~~R-~~R 205 (281)
...+|+. |++....+...|. .+.+|||++|.+++.+| ..|
T Consensus 86 ~~g~ILD---GfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R 131 (230)
T 3gmt_A 86 ANGYLFD---GFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGR 131 (230)
T ss_dssp TTCEEEE---SCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTE
T ss_pred CCCeEec---CCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcC
Confidence 2345553 4544433333332 57899999999999999 443
No 74
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.37 E-value=3.2e-13 Score=133.97 Aligned_cols=159 Identities=17% Similarity=0.202 Sum_probs=93.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC----C--ceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR----Y--YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~----~--~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~ 165 (281)
+++.|+|+|+|||||||+|+.|++.|+ + .++|.|.+.....+..... .......++.. .+++..+...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~---~~er~~~i~ri-~~v~~~~~~~g~ 470 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFT---REDRHTNIQRI-AFVATELTRAGA 470 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCS---HHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCC---hhHHHHHHHHH-HHHHHHHHhCCC
Confidence 468899999999999999999999987 3 4667777655433311111 01111222222 134555555566
Q ss_pred eEEEeCCceee--chhhHHhcc-CC--cEEEEEcCHHHHHhhhcCCCCCcChHHHHHHHHHHhhcccc--CCcEEEEcCc
Q 023493 166 LVVCAGNGAVQ--SSANLALLR-HG--ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQK 238 (281)
Q Consensus 166 ~VIa~G~g~v~--~~~~~~~L~-~~--~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~~~r~~~y~--~ad~~Id~~~ 238 (281)
.||++...... ....+.+++ .+ ++|||++|++++.+|..++.........+..+...+.++|. .++++||+
T Consensus 471 ~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~~~~p~~~dl~IDt-- 548 (573)
T 1m8p_A 471 AVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDF-- 548 (573)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECT--
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccccccccCCCCEEEEC--
Confidence 67765211000 012223344 35 88999999999999943321100000012222334455553 47888874
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 239 VASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 239 ~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
++.++++++++|++.+.+
T Consensus 549 ----------s~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 549 ----------SKQSVRSIVHEIILVLES 566 (573)
T ss_dssp ----------TTSCHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHh
Confidence 578999999999998864
No 75
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.34 E-value=2.6e-12 Score=110.15 Aligned_cols=154 Identities=10% Similarity=0.072 Sum_probs=85.0
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhC-----------------------CceecCchHHHHHhCCCChHHHHHhhhh
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADALR-----------------------YYYFDSDSLVFEAAGGESAAKAFRESDE 146 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l~-----------------------~~~~d~D~li~~~~g~~~i~eif~~~ge 146 (281)
..+|+.|+|+|+|||||||+++.|++.++ +.|++.|.+......+..+ +.....|.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 87 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFL-EFDKYANN 87 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEE-EEEEETTE
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCE-EeHHhCCC
Confidence 46789999999999999999999999884 2233334433222211110 00000011
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEeCCceeechhhHHhc----c--CCcEEEEE-cCHHHHHhh-hcCCCCCcChHHHHHH
Q 023493 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALL----R--HGISLWID-VPPGMVARM-DHSGFPESEVLPQLFA 218 (281)
Q Consensus 147 ~~fr~~e~~vl~~l~~~~~~VIa~G~g~v~~~~~~~~L----~--~~~vV~L~-~s~e~l~~R-~~R~r~~~~~~~~l~~ 218 (281)
.+... ...+..+...+..||..+. ......+ . ..++|||+ +|++++.+| ..|++..+ +.+.+
T Consensus 88 ~~~~~--~~~i~~~l~~g~~vi~d~~-----~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~---~~i~~ 157 (204)
T 2qor_A 88 FYGTL--KSEYDLAVGEGKICLFEMN-----INGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKP---EEINK 157 (204)
T ss_dssp EEEEE--HHHHHHHHHTTCEEEEECC-----HHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCH---HHHHH
T ss_pred eecCC--HHHHHHHHHcCCeEEEEEC-----HHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCH---HHHHH
Confidence 11110 1123333334444444321 1111112 2 23889999 999999999 77775422 22222
Q ss_pred -HHHHhhcc---c-cCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 219 -LYKEMRDG---Y-ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 219 -~~~~r~~~---y-~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
+...+.+. | ..+|++|++ + ++++++++|.+.+.+.+
T Consensus 158 rl~~~~~~~~~~~~~~~d~vi~n-------------~-~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 158 RMQELTREMDEADKVGFNYFIVN-------------D-DLARTYAELREYLLGSY 198 (204)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEC-------------S-SHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhccCcEEEEC-------------c-CHHHHHHHHHHHHHHHh
Confidence 22222222 3 358888874 2 89999999999987643
No 76
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.30 E-value=1.8e-10 Score=100.39 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=91.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC---CceecC--------chHHHHHhC-CC--Ch---HH--HHHhhhhhhHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDS--------DSLVFEAAG-GE--SA---AK--AFRESDEKGYQQ 151 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~---~~~~d~--------D~li~~~~g-~~--~i---~e--if~~~ge~~fr~ 151 (281)
++|+.|+|.|++||||||+++.|++.|+ +..+-+ ...+++.+. +. .+ .+ +|... .+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~---R~~~ 80 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAA---RAQH 80 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHH---HHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH---HHHH
Confidence 6789999999999999999999999885 333321 111222211 00 00 00 01110 0111
Q ss_pred HHHHHHHHHhcCCCeEEEeC----------CceeechhhH---H-----hccCCcEEEEEcCHHHHHhh-hcCCC---CC
Q 023493 152 AETEVLKQLSSMGRLVVCAG----------NGAVQSSANL---A-----LLRHGISLWIDVPPGMVARM-DHSGF---PE 209 (281)
Q Consensus 152 ~e~~vl~~l~~~~~~VIa~G----------~g~v~~~~~~---~-----~L~~~~vV~L~~s~e~l~~R-~~R~r---~~ 209 (281)
.+ +++......+..||+.. .+--...... . ...++++|||++|++++.+| .+|+. ..
T Consensus 81 ~~-~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E 159 (213)
T 4edh_A 81 LA-GVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFE 159 (213)
T ss_dssp HH-HTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTT
T ss_pred HH-HHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCccc
Confidence 11 22333334566777752 1100111111 1 12378999999999999999 66642 22
Q ss_pred cC---hHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 210 SE---VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 210 ~~---~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
.+ ....+...|.+....|...-++||. +.+++++.++|.+.+.+++.
T Consensus 160 ~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa-------------~~s~eeV~~~I~~~l~~~l~ 209 (213)
T 4edh_A 160 QEDRRFFEAVRQTYLQRAAQAPERYQVLDA-------------GLPLAEVQAGLDRLLPNLLE 209 (213)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCTTTEEEEET-------------TSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCcEEEEeC-------------CCCHHHHHHHHHHHHHHHHH
Confidence 21 2334444555544334334577885 58999999999999998774
No 77
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.28 E-value=3.6e-12 Score=125.71 Aligned_cols=157 Identities=19% Similarity=0.244 Sum_probs=91.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC-----ceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCe
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~-----~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (281)
.+..|+|+|++||||||+|+.|++.++. .++|.|.+.+...+.....+ ......+..+. .++..+...+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~---~er~~~l~~i~-~~~~~~l~~G~~ 446 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSK---EDRITNILRVG-FVASEIVKHNGV 446 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSH---HHHHHHHHHHH-HHHHHHHHTTCE
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccH---HHHHHHHHHHH-HHHHHHHhCCCE
Confidence 3688999999999999999999998873 78898877655443111111 11111112111 123333344455
Q ss_pred EEEeCCceeechhh----HHhcc-CC-cEEEEEcCHHHHHhhhcCCCCCcChHHHHHHHHHHhhcccc--CCcEEEEcCc
Q 023493 167 VVCAGNGAVQSSAN----LALLR-HG-ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQK 238 (281)
Q Consensus 167 VIa~G~g~v~~~~~----~~~L~-~~-~vV~L~~s~e~l~~R~~R~r~~~~~~~~l~~~~~~r~~~y~--~ad~~Id~~~ 238 (281)
||..+. ...... +.+++ .+ ++|||++|++++.+|..|+....+....+..++..+.+++. .+|++||+
T Consensus 447 VI~d~~--~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~adivIDt-- 522 (546)
T 2gks_A 447 VICALV--SPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDT-- 522 (546)
T ss_dssp EEEECC--CCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCSEEEET--
T ss_pred EEEEcC--CCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhccccccCCcEEEEC--
Confidence 555421 112222 22333 46 78999999999999943331111111233333333444442 47899985
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 239 VASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 239 ~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
++.++++++++|++.+..
T Consensus 523 ----------s~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 523 ----------TKLTPEESALKILEFLKK 540 (546)
T ss_dssp ----------TTSCHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHH
Confidence 468999999999988864
No 78
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.27 E-value=1.9e-11 Score=102.95 Aligned_cols=151 Identities=12% Similarity=-0.022 Sum_probs=82.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC-ceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRY-YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~-~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G 171 (281)
|..|+|+|++||||||+++.|++.++. .+++.|.+......+....+.........+...+.. ..........+|..+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ild~ 80 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-TVNFLLAQNDVVLDY 80 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-HHHHHHTTCEEEEES
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-HHHHHhcCCcEEEee
Confidence 467899999999999999999998865 789988875432211111111000011122222221 222222233343333
Q ss_pred Cceeechhh----HHhcc------CCcEEEEEcCHHHHHhh-hcCCCCC-cChHHHHHHHHHHhhccccCCcEEEEcCcc
Q 023493 172 NGAVQSSAN----LALLR------HGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYATADVTVSLQKV 239 (281)
Q Consensus 172 ~g~v~~~~~----~~~L~------~~~vV~L~~s~e~l~~R-~~R~r~~-~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~ 239 (281)
+ ..... ..+++ ...++||++|++.+.+| ..|.... -+. ..+.. ++.+...+...+.+|++
T Consensus 81 --~-~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~-~~~~~-~~~~~~~~~~~~~ii~t--- 152 (189)
T 2bdt_A 81 --I-AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGE-RCLEL-VEEFESKGIDERYFYNT--- 152 (189)
T ss_dssp --C-CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CG-GGGHH-HHHHHHTTCCTTSEEEC---
T ss_pred --c-cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCH-HHHHH-HHHHhhcCCCccEEEeC---
Confidence 1 11111 12221 22468999999999999 6554321 111 12333 55555566556677774
Q ss_pred ccccccCCCCCC---CHHHHHHHHH
Q 023493 240 ASQLGYDDLDAV---TTEDMTLEVL 261 (281)
Q Consensus 240 a~~l~~~dts~~---speeva~~Il 261 (281)
+.. ++++++++|+
T Consensus 153 ---------sh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 153 ---------SHLQPTNLNDIVKNLK 168 (189)
T ss_dssp ---------SSSCGGGHHHHHHHHH
T ss_pred ---------CCCChhhHHHHHHHHh
Confidence 456 7888888887
No 79
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.27 E-value=1e-11 Score=106.24 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=89.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh-CCceecCchHHHHHhCCCCh-H------HHHHhhhhhhHHHHHHHHHHHHh-
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESA-A------KAFRESDEKGYQQAETEVLKQLS- 161 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l-~~~~~d~D~li~~~~g~~~i-~------eif~~~ge~~fr~~e~~vl~~l~- 161 (281)
-++..|+|+|++||||||+++.|++.+ ++.+++.|.++..... ... . ++........+.+.-...+....
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 97 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESE-IETDKNGFLQYDVLEALNMEKMMSAISCWMESARH 97 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGG-SCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhH-hhccccCCChhHHHHHhHHHHHHHHHHHHHhCCCC
Confidence 346789999999999999999999988 8999999987532110 000 0 00000000111111011122211
Q ss_pred ----------cCCCeEEEeCCceeechhhHHhcc-CCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHH----HHHHHhhc
Q 023493 162 ----------SMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPESEVLPQLF----ALYKEMRD 225 (281)
Q Consensus 162 ----------~~~~~VIa~G~g~v~~~~~~~~L~-~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~----~~~~~r~~ 225 (281)
.....||.+|. .... ...+.. .+.+|||++|++++.+| ..|++..++....+. ..|..+..
T Consensus 98 ~~~~~~~~~~~~~~~vi~eg~--~~~~-~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~~ 174 (207)
T 2qt1_A 98 SVVSTDQESAEEIPILIIEGF--LLFN-YKPLDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQ 174 (207)
T ss_dssp SSCCC-----CCCCEEEEECT--TCTT-CGGGTTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHHH
T ss_pred CCcCCCeeecCCCCEEEEeeh--HHcC-cHHHHHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHHH
Confidence 11345666552 2211 111223 68999999999999999 667655433222222 23333333
Q ss_pred ccc-CCcEE--EEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 226 GYA-TADVT--VSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 226 ~y~-~ad~~--Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
.|. .++.+ ||+ +.+++++.++|.+.+.+
T Consensus 175 ~~~~~~~~v~~Id~-------------~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 175 EMQDITWEVVYLDG-------------TKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp HGGGCSSCCEEEET-------------TSCHHHHHHHHHHHHTT
T ss_pred HHHhcCCeEEEecC-------------CCCHHHHHHHHHHHHHh
Confidence 333 35644 764 47999999999888753
No 80
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.25 E-value=2.1e-12 Score=120.10 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=90.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH--------------HHHHhCCC-----ChHHH-HHhhhhhhHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGE-----SAAKA-FRESDEKGYQQ 151 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l--------------i~~~~g~~-----~i~ei-f~~~ge~~fr~ 151 (281)
+++.|+|+||+||||||+|..||++++..++|+|.+ .++..| . ++.++ +..++...|++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~g-vphhlidi~~~~~e~~s~~~F~~ 117 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGG-VPHHLLGEVDPARGELTPADFRS 117 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTT-CCEESSSCBCGGGCCCCHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcC-CCEeeccccCcccCccCHHHHHH
Confidence 456899999999999999999999999999999997 333333 2 33444 45566778999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCceeechhhHH---------------------hcc-CCcEEEEEcCHHHHHhh-hcCCCC
Q 023493 152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLA---------------------LLR-HGISLWIDVPPGMVARM-DHSGFP 208 (281)
Q Consensus 152 ~e~~vl~~l~~~~~~VIa~G~g~v~~~~~~~---------------------~L~-~~~vV~L~~s~e~l~~R-~~R~r~ 208 (281)
.+..++..+...+..+|.+||+......... .++ ..++|||+++.+++.+| .+|..+
T Consensus 118 ~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R~~~ 197 (339)
T 3a8t_A 118 LAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRVDD 197 (339)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhhccH
Confidence 8888898888778888989876433222111 122 35789999999999999 555322
Q ss_pred --CcChHHHHHHHH
Q 023493 209 --ESEVLPQLFALY 220 (281)
Q Consensus 209 --~~~~~~~l~~~~ 220 (281)
.....++++.++
T Consensus 198 Ml~~Gl~eEv~~L~ 211 (339)
T 3a8t_A 198 MLELGMFDELAEFY 211 (339)
T ss_dssp HHHHTHHHHHHHHC
T ss_pred hhhccHHHHHHHHH
Confidence 122334455554
No 81
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.23 E-value=3.7e-10 Score=97.78 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=84.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh--CCceecC--------chHHHHHh-CCCChH-----HHHHhhhhhhHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDS--------DSLVFEAA-GGESAA-----KAFRESDEKGYQQAETEV 156 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l--~~~~~d~--------D~li~~~~-g~~~i~-----eif~~~ge~~fr~~e~~v 156 (281)
|+-|+|.|+.||||||+++.|++.| |+..+-+ ...+++.+ .+..+. -+|.....+ ..+ ..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~---~~~-~~ 77 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE---HLV-LK 77 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHH---HHH-HT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHH---HHH-HH
Confidence 4679999999999999999999988 4444321 11222221 111110 011111111 111 12
Q ss_pred HHHHhcCCCeEEEeCC------------ceeec-hhhHH-----hccCCcEEEEEcCHHHHHhh-hcCCCCCc----ChH
Q 023493 157 LKQLSSMGRLVVCAGN------------GAVQS-SANLA-----LLRHGISLWIDVPPGMVARM-DHSGFPES----EVL 213 (281)
Q Consensus 157 l~~l~~~~~~VIa~G~------------g~v~~-~~~~~-----~L~~~~vV~L~~s~e~l~~R-~~R~r~~~----~~~ 213 (281)
+......+..||+... |.... -.... .+.+|++|||++|+++..+| .+|++..+ +..
T Consensus 78 i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~ 157 (205)
T 4hlc_A 78 VIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDL 157 (205)
T ss_dssp HHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHHH
T ss_pred HHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCH
Confidence 2233345677877521 11100 00011 12379999999999999999 66665421 112
Q ss_pred ---HHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 214 ---PQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 214 ---~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
..+...|.+....+...-.+||. +.++++|.++|.+.+.++++
T Consensus 158 ~f~~~v~~~Y~~l~~~~~~~~~~IDa-------------~~~~e~V~~~i~~~i~~~L~ 203 (205)
T 4hlc_A 158 KFHEKVIEGYQEIIHNESQRFKSVNA-------------DQPLENVVEDTYQTIIKYLE 203 (205)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEET-------------TSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEC-------------CCCHHHHHHHHHHHHHHHHh
Confidence 22333333332222212256774 58999999999999998875
No 82
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.22 E-value=1.4e-10 Score=103.26 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=48.2
Q ss_pred CCcEEEEEcCHHHHHhh-hcCCCCCc-----ChHHHHHHHHHHhh------cccc----CCcEEEEcCccccccccCCCC
Q 023493 186 HGISLWIDVPPGMVARM-DHSGFPES-----EVLPQLFALYKEMR------DGYA----TADVTVSLQKVASQLGYDDLD 249 (281)
Q Consensus 186 ~~~vV~L~~s~e~l~~R-~~R~r~~~-----~~~~~l~~~~~~r~------~~y~----~ad~~Id~~~~a~~l~~~dts 249 (281)
++++|||++|++++.+| .+|+++.+ +....+...|+++. +.|. ...++||.
T Consensus 175 pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~------------- 241 (263)
T 1p5z_B 175 LDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDV------------- 241 (263)
T ss_dssp CSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEEC-------------
T ss_pred CCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEEC-------------
Confidence 67899999999999999 66666521 22344444555432 2232 13466774
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 023493 250 AVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 250 ~~speeva~~Il~~i~~~~~ 269 (281)
+.++++++++|++.+.+++.
T Consensus 242 ~~~~eev~~~I~~~l~~~l~ 261 (263)
T 1p5z_B 242 NEDFKDKYESLVEKVKEFLS 261 (263)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 35999999999999987654
No 83
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.21 E-value=9e-11 Score=104.05 Aligned_cols=162 Identities=15% Similarity=0.209 Sum_probs=87.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceec--------Cc----hHHHHHh-CCC---Ch---HH--HHHhhhhhhH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--------SD----SLVFEAA-GGE---SA---AK--AFRESDEKGY 149 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d--------~D----~li~~~~-g~~---~i---~e--if~~~ge~~f 149 (281)
++|+.|+|.|++||||||+++.|++.|+...++ .+ ..+++.+ ++. .+ .+ +|.... +
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R---~ 101 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAAR---V 101 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHH---H
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHH---H
Confidence 578999999999999999999999888532222 11 1122221 100 00 01 111110 1
Q ss_pred HHHHHHHHHHHhcCCCeEEEeC----------Cceeechhh------HH--hccCCcEEEEEcCHHHHHhh-hcCCC---
Q 023493 150 QQAETEVLKQLSSMGRLVVCAG----------NGAVQSSAN------LA--LLRHGISLWIDVPPGMVARM-DHSGF--- 207 (281)
Q Consensus 150 r~~e~~vl~~l~~~~~~VIa~G----------~g~v~~~~~------~~--~L~~~~vV~L~~s~e~l~~R-~~R~r--- 207 (281)
...+ .++......+..||+.. .+--..... +. .+.++++|||++|+++..+| .+|+.
T Consensus 102 ~~~~-~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr 180 (236)
T 3lv8_A 102 QLVE-NVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDR 180 (236)
T ss_dssp HHHH-HTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCT
T ss_pred HHHH-HHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcch
Confidence 1111 12333334567788752 110011111 11 12378999999999999999 66653
Q ss_pred CCcC---hHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhh
Q 023493 208 PESE---VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRK 270 (281)
Q Consensus 208 ~~~~---~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~ 270 (281)
...+ ....+...|.+....+.. .++||. +.+++++.++|.+.+.+++..
T Consensus 181 ~E~~~~~~~~rv~~~y~~la~~~~~-~~vIDa-------------~~sieeV~~~I~~~l~~~l~~ 232 (236)
T 3lv8_A 181 IEKMDISFFERARERYLELANSDDS-VVMIDA-------------AQSIEQVTADIRRALQDWLSQ 232 (236)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHCTT-EEEEET-------------TSCHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHCCC-EEEEeC-------------CCCHHHHHHHHHHHHHHHHHh
Confidence 2221 233444445444332322 567875 589999999999999988743
No 84
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.20 E-value=7e-11 Score=99.25 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=90.8
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhCCc--eecCchHHHHHhCCCChHHHHHhhhhhhHHHHHH--HHHHHHhcCCC
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET--EVLKQLSSMGR 165 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l~~~--~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~--~vl~~l~~~~~ 165 (281)
..+|..|+|+|+|||||||+++.|+..++.. ++|.|++...... ..+..++.+.+.....-.+. .........+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 84 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKH-GRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGY 84 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCS-SCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhc-ccccCCccchhhhhHHHHHHHHHHHHHHhccCC
Confidence 3468899999999999999999999876554 7888887643221 11111111111110000000 00111112222
Q ss_pred eEEEeCCceeechhhHHhc---c-CCcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHhhccccCCcEEEEcCccc
Q 023493 166 LVVCAGNGAVQSSANLALL---R-HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVA 240 (281)
Q Consensus 166 ~VIa~G~g~v~~~~~~~~L---~-~~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a 240 (281)
.++..+ + ........+ . ....+++.++.+++..| ..|+.+.-.....+..+++.+.+.|..++++|++
T Consensus 85 ~~~~~~--~-~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~~~~~~~~l~~~~~~~i~t---- 157 (191)
T 1zp6_A 85 FVILDG--V-VRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPV---- 157 (191)
T ss_dssp EEEECS--C-CCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCCGGGGGGEEEC----
T ss_pred eEEEec--c-CcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCcccccEEEC----
Confidence 333221 1 111111111 2 23579999999999999 5554332111245566677777766656778874
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 241 SQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 241 ~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
++.++++++++|++.+..
T Consensus 158 --------~~~~~~~~~~~i~~~l~~ 175 (191)
T 1zp6_A 158 --------SGKDTDQALQSAINALQS 175 (191)
T ss_dssp --------TTCCTTTTTTTTHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHh
Confidence 467899999999888763
No 85
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.17 E-value=6.7e-10 Score=95.47 Aligned_cols=159 Identities=18% Similarity=0.119 Sum_probs=83.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh---CCceecC----c-h---HHHHHh-C-CCC-hHHHHHhhhhhhHHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS----D-S---LVFEAA-G-GES-AAKAFRESDEKGYQQAETEVLKQ 159 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l---~~~~~d~----D-~---li~~~~-g-~~~-i~eif~~~ge~~fr~~e~~vl~~ 159 (281)
+.|+|.|+.||||||+++.|++.| |+.++-+ + . .+.+.. + ..+ ..+.+--. ....+.... +..
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~--a~r~~~~~~-I~~ 77 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFL--ASRNLLVTE-IKQ 77 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHH--HHHHHHHHH-HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHH--HHHHHHHHH-HHH
Confidence 468999999999999999999877 5554421 1 1 111111 0 000 00000000 000111112 333
Q ss_pred HhcCCCeEEEeCC----------ceeechh---hHH-----hccCCcEEEEEcCHHHHHhh-hcCCCCC-cChHHHHHHH
Q 023493 160 LSSMGRLVVCAGN----------GAVQSSA---NLA-----LLRHGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFAL 219 (281)
Q Consensus 160 l~~~~~~VIa~G~----------g~v~~~~---~~~-----~L~~~~vV~L~~s~e~l~~R-~~R~r~~-~~~~~~l~~~ 219 (281)
....+..||+..- +.-.... .+. .+.++++|||++|+++..+| ..+++.. .+....++..
T Consensus 78 ~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~ef~~rv~~~ 157 (197)
T 3hjn_A 78 YLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERVREG 157 (197)
T ss_dssp HHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCHHHHHHHHHH
T ss_pred HHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccHHHHHHHHHH
Confidence 3345677887521 1000111 110 12378999999999999999 5555542 2233444445
Q ss_pred HHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 023493 220 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 268 (281)
Q Consensus 220 ~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~ 268 (281)
|.+....+..--.+||. +.++|+|.++|++.+++.+
T Consensus 158 y~~la~~~~~~~~~IDa-------------~~~~eeV~~~I~~~i~~rl 193 (197)
T 3hjn_A 158 YLVLAREHPERIVVLDG-------------KRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp HHHHHHHCTTTEEEEET-------------TSCHHHHHHHHHHHHSCC-
T ss_pred HHHHHHhCCCCEEEEcC-------------CCCHHHHHHHHHHHHHHHh
Confidence 54433222222356774 5899999999999987644
No 86
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.17 E-value=1.1e-10 Score=102.98 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=83.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh-------CCceecC----c----hHHHHHh--CCCC-hHH--HHHhhhhhhHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDS----D----SLVFEAA--GGES-AAK--AFRESDEKGYQ 150 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l-------~~~~~d~----D----~li~~~~--g~~~-i~e--if~~~ge~~fr 150 (281)
.+|+.|+|.|++||||||+++.|++.| |+..+-+ + ..+++.+ +... ..+ +|.. ..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a---~R~~ 99 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFA---GRRE 99 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHH---HHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHH---HHHH
Confidence 578999999999999999999999988 4433211 1 1122211 0000 000 0110 0011
Q ss_pred HHHHHHHHHHhcCCCeEEEeC----------CceeechhhHH--------hccCCcEEEEEcCHHHHHhh-hcCCCC--C
Q 023493 151 QAETEVLKQLSSMGRLVVCAG----------NGAVQSSANLA--------LLRHGISLWIDVPPGMVARM-DHSGFP--E 209 (281)
Q Consensus 151 ~~e~~vl~~l~~~~~~VIa~G----------~g~v~~~~~~~--------~L~~~~vV~L~~s~e~l~~R-~~R~r~--~ 209 (281)
..+ +++......+..||+.. .+--....... .+.++++|||++|++++.+| .+|+.. .
T Consensus 100 ~~~-~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~ 178 (227)
T 3v9p_A 100 HLA-LVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKF 178 (227)
T ss_dssp HHH-HTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC---
T ss_pred HHH-HHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCccch
Confidence 111 12333334567777752 11001111111 12378999999999999999 666421 1
Q ss_pred cC----hHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHH
Q 023493 210 SE----VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 266 (281)
Q Consensus 210 ~~----~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~ 266 (281)
+. ....+...|.+....|...-++||. +.+++++.++|.+.+.+
T Consensus 179 E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa-------------~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 179 ESESDAFFARTRAEYLRRAQEAPHRFVIVDS-------------SEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTTEEEEET-------------TSCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCEEEEeC-------------CCCHHHHHHHHHHHHHh
Confidence 21 2233444444433333323467885 58999999999998875
No 87
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.16 E-value=9.1e-10 Score=96.03 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=88.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh---CC-ceec----Cch----HHHHHhC------CCCh---HH--HHHhhhhh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RY-YYFD----SDS----LVFEAAG------GESA---AK--AFRESDEK 147 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l---~~-~~~d----~D~----li~~~~g------~~~i---~e--if~~~ge~ 147 (281)
++|+.|+|.|++||||||+++.|++.| |+ ..+- .+. .+++... ...+ .+ +|....
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R-- 78 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAAR-- 78 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHH--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHH--
Confidence 368999999999999999999999887 34 2211 111 1222110 0000 00 111110
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEeC----------Cceeechhh------HH--hccCCcEEEEEcCHHHHHhh-hcCCC-
Q 023493 148 GYQQAETEVLKQLSSMGRLVVCAG----------NGAVQSSAN------LA--LLRHGISLWIDVPPGMVARM-DHSGF- 207 (281)
Q Consensus 148 ~fr~~e~~vl~~l~~~~~~VIa~G----------~g~v~~~~~------~~--~L~~~~vV~L~~s~e~l~~R-~~R~r- 207 (281)
+...+ .++......+.+||+.. .+--..... +. .+.++++|||++|+++..+| .+|+.
T Consensus 79 -~~~~~-~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~ 156 (213)
T 4tmk_A 79 -VQLVE-TVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL 156 (213)
T ss_dssp -HHHHH-HTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSC
T ss_pred -HHHHH-HHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 00111 12333334567788752 110011111 11 12378999999999999999 55543
Q ss_pred --CCcC---hHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023493 208 --PESE---VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 269 (281)
Q Consensus 208 --~~~~---~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~ 269 (281)
...+ ....+...|.+....+ ..-.+||. +.+++++.++|.+.+.+++.
T Consensus 157 dr~E~~~~~f~~rv~~~y~~la~~~-~~~~vIDa-------------~~s~eeV~~~I~~~l~~~l~ 209 (213)
T 4tmk_A 157 DRIEQESFDFFNRTRARYLELAAQD-KSIHTIDA-------------TQPLEAVMDAIRTTVTHWVK 209 (213)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHTC-TTEEEEET-------------TSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHC-CcEEEECC-------------CCCHHHHHHHHHHHHHHHHH
Confidence 2212 2233444444433222 23367774 58999999999999998764
No 88
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.14 E-value=1.7e-10 Score=101.49 Aligned_cols=107 Identities=10% Similarity=0.102 Sum_probs=62.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHh-CCCC----hHHHHHhhhhhhHHHHHHHHHH-HHhc--C
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGES----AAKAFRESDEKGYQQAETEVLK-QLSS--M 163 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~-g~~~----i~eif~~~ge~~fr~~e~~vl~-~l~~--~ 163 (281)
++..|+|+|++||||||+++.|++.+|+..++.|+++.... .+.. +..++.. +...+.....+.+. .+.. .
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEK-SLLVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhcCC
Confidence 46899999999999999999999999999999988776422 1011 1112221 21111211122222 2221 1
Q ss_pred CCeEEEeCCceeechhhHHh---c-cCCcEEEEEcCHHHHHhh
Q 023493 164 GRLVVCAGNGAVQSSANLAL---L-RHGISLWIDVPPGMVARM 202 (281)
Q Consensus 164 ~~~VIa~G~g~v~~~~~~~~---L-~~~~vV~L~~s~e~l~~R 202 (281)
..+++ .|. ......... + ..+++|||++|++++.+|
T Consensus 105 ~~~il-~g~--~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r 144 (246)
T 2bbw_A 105 QHWLL-DGF--PRTLGQAEALDKICEVDLVISLNIPFETLKDR 144 (246)
T ss_dssp SCEEE-ESC--CCSHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred CeEEE-ECC--CCCHHHHHHHHhhcCCCEEEEEECCHHHHHHH
Confidence 23333 331 111111111 2 267999999999999888
No 89
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.13 E-value=2e-10 Score=103.62 Aligned_cols=110 Identities=11% Similarity=0.140 Sum_probs=65.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh-CCceecCchHHHHHhCCCChHH--HHHhhhhhhHHHHHHHHHHHHh---cCCCeE
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAAK--AFRESDEKGYQQAETEVLKQLS---SMGRLV 167 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l-~~~~~d~D~li~~~~g~~~i~e--if~~~ge~~fr~~e~~vl~~l~---~~~~~V 167 (281)
+.|+|+|+|||||||+++.|++.+ |+.++++|.+.....+ ....+ -+...++..+.+.-...+.... ..+..|
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~v 81 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGV 81 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhcc-CCcccccccchhhhhHHHHHHHHHHHHHHhhccCCCEE
Confidence 579999999999999999999985 9999999977665544 21100 0111122222222223344444 334455
Q ss_pred EEeCCceeechhhHH----hcc-CC---cEEEEEcCHHHHHhh-hcCC
Q 023493 168 VCAGNGAVQSSANLA----LLR-HG---ISLWIDVPPGMVARM-DHSG 206 (281)
Q Consensus 168 Ia~G~g~v~~~~~~~----~L~-~~---~vV~L~~s~e~l~~R-~~R~ 206 (281)
|..+.. .....+. ..+ .+ .+|||++|++++.+| ..|+
T Consensus 82 i~d~~~--~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 82 IISDTN--LNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp EECSCC--CCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred EEeCCC--CCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 554322 2222221 112 22 789999999999999 5564
No 90
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.11 E-value=1.1e-10 Score=114.49 Aligned_cols=111 Identities=19% Similarity=0.183 Sum_probs=68.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcee-----cCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHH---HHHH---
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-----DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEV---LKQL--- 160 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~-----d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~v---l~~l--- 160 (281)
.+.+|+++|+|||||||+|+.|++.|++.++ +.|+++++..+.....++|...+++.|+..+..+ +..+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~ 113 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSY 113 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999976664 5599888887733345677766777666544332 2211
Q ss_pred h--cCCCeEE-E-eCCceeechhhHHhcc-CC---cEEEEEcC-HHHHHhh
Q 023493 161 S--SMGRLVV-C-AGNGAVQSSANLALLR-HG---ISLWIDVP-PGMVARM 202 (281)
Q Consensus 161 ~--~~~~~VI-a-~G~g~v~~~~~~~~L~-~~---~vV~L~~s-~e~l~~R 202 (281)
+ ..+..|| + ++++.......+..++ .+ +.|++.|+ .+.+.+|
T Consensus 114 L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~r 164 (520)
T 2axn_A 114 LAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASN 164 (520)
T ss_dssp HHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHH
T ss_pred HHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHH
Confidence 1 2345555 2 3332222223333343 34 24555566 6666666
No 91
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.10 E-value=1.7e-10 Score=101.52 Aligned_cols=163 Identities=12% Similarity=0.061 Sum_probs=82.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCC----ceec-----Cc----hHHHHHh-CCCCh---HH--HHHhhhhhhHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY----YYFD-----SD----SLVFEAA-GGESA---AK--AFRESDEKGYQQ 151 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~----~~~d-----~D----~li~~~~-g~~~i---~e--if~~~ge~~fr~ 151 (281)
.+|+.|+|.|++||||||+++.|++.|+. ..+- .+ ..+++.+ +...+ .+ +|.... +..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R---~~~ 95 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMR---REH 95 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHH---HHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHH---HHH
Confidence 46899999999999999999999987754 3222 11 1122221 10000 00 111111 111
Q ss_pred HHHHHHHHHhcCCCeEEEeC----------CceeechhhHH-----h--ccCCcEEEEEcCHHHHHhhhcCCCCCc---C
Q 023493 152 AETEVLKQLSSMGRLVVCAG----------NGAVQSSANLA-----L--LRHGISLWIDVPPGMVARMDHSGFPES---E 211 (281)
Q Consensus 152 ~e~~vl~~l~~~~~~VIa~G----------~g~v~~~~~~~-----~--L~~~~vV~L~~s~e~l~~R~~R~r~~~---~ 211 (281)
.+ +++......+..||+.. .+--...+... . .++|++|||++|+++..+|.++++... +
T Consensus 96 ~~-~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri~rdr~E~~~~e 174 (223)
T 3ld9_A 96 FV-KIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRSCKNGYEFADME 174 (223)
T ss_dssp HH-HTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC----------------CHH
T ss_pred HH-HHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHhccCccccchHH
Confidence 11 12333334566777752 11000111111 1 248999999999999999953344322 2
Q ss_pred hHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhhc
Q 023493 212 VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKK 271 (281)
Q Consensus 212 ~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~~ 271 (281)
....+...|.+....|....++||. +.+++++ ++|.+.+.+++..-
T Consensus 175 ~~~rv~~~y~~la~~~~~~~~vIDa-------------~~sieeV-~~I~~~l~~~lg~~ 220 (223)
T 3ld9_A 175 FYYRVRDGFYDIAKKNPHRCHVITD-------------KSETYDI-DDINFVHLEVIKVL 220 (223)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEEEES-------------SCSSSCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEcC-------------CCCHHHH-HHHHHHHHHHHhhh
Confidence 3345566666554444435678885 5789999 99999998877543
No 92
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.07 E-value=5.4e-10 Score=99.13 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=68.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC--CceecCchHH---------HHHhCCCChHHHHHhhhhhhHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLV---------FEAAGGESAAKAFRESDEKGYQQAETEVLKQ 159 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~--~~~~d~D~li---------~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~ 159 (281)
-++..|+|+|+|||||||+++.|++.++ +.++|.|.+. ....| ..+.+++.. .+......++..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g-~~~~~~~~~----~~~~~~~~~~~~ 104 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYG-KDSVEYTKD----FAGKMVESLVTK 104 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCS-STTHHHHHH----HHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcC-chHHHHhhH----HHHHHHHHHHHH
Confidence 4578899999999999999999999987 6778998873 33334 444444332 122223344555
Q ss_pred HhcC-CCeEEEeCCcee-echhhHHhcc-CCc---EEEEEcCHHHHHhh
Q 023493 160 LSSM-GRLVVCAGNGAV-QSSANLALLR-HGI---SLWIDVPPGMVARM 202 (281)
Q Consensus 160 l~~~-~~~VIa~G~g~v-~~~~~~~~L~-~~~---vV~L~~s~e~l~~R 202 (281)
+... ..+||+++.+.. ........++ .+. ++|+++|++++.+|
T Consensus 105 ~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R 153 (253)
T 2p5t_B 105 LSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLS 153 (253)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred HHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHH
Confidence 5544 366776543322 2223334444 443 46889999999988
No 93
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.02 E-value=1.8e-09 Score=94.36 Aligned_cols=71 Identities=10% Similarity=0.173 Sum_probs=37.4
Q ss_pred CCcEEEEEcCHHHHHhh-hcCCCCCc-----ChHHHHHHHHHHhhccc--c-CCc-EEEEcCccccccccCCCCCCCHHH
Q 023493 186 HGISLWIDVPPGMVARM-DHSGFPES-----EVLPQLFALYKEMRDGY--A-TAD-VTVSLQKVASQLGYDDLDAVTTED 255 (281)
Q Consensus 186 ~~~vV~L~~s~e~l~~R-~~R~r~~~-----~~~~~l~~~~~~r~~~y--~-~ad-~~Id~~~~a~~l~~~dts~~spee 255 (281)
+|++|||++|++++.+| .+|+++.+ +....+...|.++...| . .++ ++||. +.++++
T Consensus 147 pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~-------------~~~~ee 213 (230)
T 2vp4_A 147 ADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDA-------------DLNLEN 213 (230)
T ss_dssp CSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEEC-------------CC----
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEEC-------------CCCHHH
Confidence 68999999999999999 66676532 23466777777765443 2 244 77875 579999
Q ss_pred HHHHHHHHHHHHHh
Q 023493 256 MTLEVLKEIEKLTR 269 (281)
Q Consensus 256 va~~Il~~i~~~~~ 269 (281)
+.++|.+.+.+++.
T Consensus 214 v~~~I~~~l~~~~~ 227 (230)
T 2vp4_A 214 IGTEYQRSESSIFD 227 (230)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998876553
No 94
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.01 E-value=7.6e-10 Score=105.45 Aligned_cols=127 Identities=15% Similarity=0.080 Sum_probs=76.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhhhhhHHHHHHHHHHHHhcCCCeEEEeC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e~~vl~~l~~~~~~VIa~G 171 (281)
++..|+|+|+|||||||+|+.|++.+|+.++|.|.+ + . |......+...+.....+|+++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-----~--~------------~~~~~~~~~~~l~~g~~vIiD~~ 317 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-----G--S------------WQRCVSSCQAALRQGKRVVIDNT 317 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-----C--S------------HHHHHHHHHHHHHTTCCEEEESC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-----H--H------------HHHHHHHHHHHHhcCCcEEEeCC
Confidence 468899999999999999999999999999999886 1 1 11222223333434445566543
Q ss_pred Cceeech-hhHHhcc-C---CcEEEEEcCHHHHHhh-hcCCC---C-CcChHHHHHHHHHHhhcccc--CCcEEEEcC
Q 023493 172 NGAVQSS-ANLALLR-H---GISLWIDVPPGMVARM-DHSGF---P-ESEVLPQLFALYKEMRDGYA--TADVTVSLQ 237 (281)
Q Consensus 172 ~g~v~~~-~~~~~L~-~---~~vV~L~~s~e~l~~R-~~R~r---~-~~~~~~~l~~~~~~r~~~y~--~ad~~Id~~ 237 (281)
+...... ..+.+++ . -.+|||++|.+++.+| ..|+. . .......+.+++..+++.-. ..|.++.++
T Consensus 318 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~~E~fd~v~~v~ 395 (416)
T 3zvl_A 318 NPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIP 395 (416)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCGGGTCSEEEEEC
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCcccCCcEEEEEe
Confidence 2221111 1122232 2 2689999999999999 44421 1 11223445555555544322 356676653
No 95
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.98 E-value=4.7e-09 Score=88.77 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=45.3
Q ss_pred CcEEEEEc-CHHHHHhh-hcCCCCC-cChHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHH
Q 023493 187 GISLWIDV-PPGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKE 263 (281)
Q Consensus 187 ~~vV~L~~-s~e~l~~R-~~R~r~~-~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~ 263 (281)
..+||+.. |++++.+| ..|+... +.....+.....+ ...+..+|++|++ + +.+++.++|.+.
T Consensus 119 ~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~-~~~~~~~d~vi~n-------------~-~~~~~~~~l~~~ 183 (205)
T 3tr0_A 119 ALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREE-MAHYKEFDYLVVN-------------D-NFDQAVQNLIHI 183 (205)
T ss_dssp CEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHH-HTTGGGCSEEEEC-------------S-SHHHHHHHHHHH
T ss_pred cEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HhcccCCCEEEEC-------------C-CHHHHHHHHHHH
Confidence 45677776 58999999 7776553 3444556665443 2344568999884 3 899999999988
Q ss_pred HHH
Q 023493 264 IEK 266 (281)
Q Consensus 264 i~~ 266 (281)
+..
T Consensus 184 i~~ 186 (205)
T 3tr0_A 184 ISA 186 (205)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 96
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.97 E-value=4e-09 Score=92.23 Aligned_cols=162 Identities=13% Similarity=0.148 Sum_probs=89.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCce--ec---Cch----HHHHHhCCC--Ch---HH--HHHhhhhhhHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY--FD---SDS----LVFEAAGGE--SA---AK--AFRESDEKGYQQAETE 155 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~--~d---~D~----li~~~~g~~--~i---~e--if~~~ge~~fr~~e~~ 155 (281)
+|+.|+|.|++||||||+++.|++.|+... +. .+. .+++.+... .+ .+ +|.....+ . .+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~----~-~~ 78 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWE----I-VD 78 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHT----T-HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHH----H-HH
Confidence 689999999999999999999999998622 11 111 122221100 00 00 11111100 0 11
Q ss_pred HHHHHhcCCCeEEEeC-----------CceeechhhH-H-----hccCCcEEEE-EcCHHHHHhh-hcCCCCCcC--hHH
Q 023493 156 VLKQLSSMGRLVVCAG-----------NGAVQSSANL-A-----LLRHGISLWI-DVPPGMVARM-DHSGFPESE--VLP 214 (281)
Q Consensus 156 vl~~l~~~~~~VIa~G-----------~g~v~~~~~~-~-----~L~~~~vV~L-~~s~e~l~~R-~~R~r~~~~--~~~ 214 (281)
.+......+..||+.. .|.-...-.| . ..++|++||| ++|+++..+| ..++...+. ...
T Consensus 79 ~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~~~f~~ 158 (216)
T 3tmk_A 79 KIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQE 158 (216)
T ss_dssp HHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCCHHHHH
T ss_pred HHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccHHHHHH
Confidence 2333334567788752 1100000111 1 1237899999 9999999999 433222222 233
Q ss_pred HHHHHHHHhhcc----ccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHHHhh
Q 023493 215 QLFALYKEMRDG----YATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRK 270 (281)
Q Consensus 215 ~l~~~~~~r~~~----y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~~~~ 270 (281)
.++..|.+.... +...-.+|| +.+.++++|.++|.+.+.+.+..
T Consensus 159 rvr~~Y~~la~~~~~~~~~~~~vID------------~a~~s~eeV~~~I~~~i~~~l~~ 206 (216)
T 3tmk_A 159 KVKQTFMKLLDKEIRKGDESITIVD------------VTNKGIQEVEALIWQIVEPVLST 206 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEE------------CTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccccCCCCEEEEe------------CCCCCHHHHHHHHHHHHHHHHhc
Confidence 444445444332 112335677 23689999999999999988764
No 97
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.95 E-value=3.4e-10 Score=100.72 Aligned_cols=108 Identities=8% Similarity=0.014 Sum_probs=66.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHH--H-hCC-CC--------------hHHHHH-hhhhhhHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE--A-AGG-ES--------------AAKAFR-ESDEKGYQQAET 154 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~--~-~g~-~~--------------i~eif~-~~ge~~fr~~e~ 154 (281)
+.|+|+|++||||||+|+.||+.+++.+++.|.+... . .+. .. ..+.+. ..+...|.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 4789999999999999999999999999999987421 1 000 00 000111 123455666555
Q ss_pred HHHHHHhcCCCeEEEeCCceeechhhHHhcc-----CC---cEEEEEcCH-HHHHhh-hcC
Q 023493 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLR-----HG---ISLWIDVPP-GMVARM-DHS 205 (281)
Q Consensus 155 ~vl~~l~~~~~~VIa~G~g~v~~~~~~~~L~-----~~---~vV~L~~s~-e~l~~R-~~R 205 (281)
..+ .+...+..+|.+|+..... ..++. .+ .+|||++|. +++.+| .+|
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~~~~---~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R 138 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSISLL---NCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQR 138 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCHHHH---HHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHH
T ss_pred HHH-HHHhCCCCeEEeccHHHHH---HHHHhcccccccCceEEEEecchhHHHHHHHHHHH
Confidence 556 5544444455444322111 11221 22 689999997 999998 444
No 98
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.93 E-value=7.2e-09 Score=93.96 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=64.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh--CCceecCchHHHHHhCCCChHHHHHhhh-------hhhHHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAGGESAAKAFRESD-------EKGYQQAETEVLKQLS 161 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l--~~~~~d~D~li~~~~g~~~i~eif~~~g-------e~~fr~~e~~vl~~l~ 161 (281)
.++..|+|+|+|||||||+++.|++.+ ++.+++.|.+.....+ ...+....+ ..++.......+..+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l 107 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISRLS 107 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHHHH
Confidence 457899999999999999999999998 7899999887543222 111111111 1223333334444444
Q ss_pred c-CCCeEEEeCCceee-chhhHHhcc-CC---cEEEEEcCHHHH----Hhh
Q 023493 162 S-MGRLVVCAGNGAVQ-SSANLALLR-HG---ISLWIDVPPGMV----ARM 202 (281)
Q Consensus 162 ~-~~~~VIa~G~g~v~-~~~~~~~L~-~~---~vV~L~~s~e~l----~~R 202 (281)
. ...+|+....+... .......++ .+ .++|+.+|++.+ .+|
T Consensus 108 ~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~R 158 (287)
T 1gvn_B 108 DQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIER 158 (287)
T ss_dssp HHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHH
Confidence 3 34455543222111 112223333 33 368999999999 777
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.91 E-value=1.5e-08 Score=86.49 Aligned_cols=37 Identities=24% Similarity=0.163 Sum_probs=33.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC--CceecCchHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLV 128 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~--~~~~d~D~li 128 (281)
+|..|.|+|++||||||+++.|+..++ +.+++.|..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 577899999999999999999999988 8888888754
No 100
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.89 E-value=1.2e-09 Score=105.45 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=47.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCch-----HHHHHhCCCChHHHHHhhhhhhHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS-----LVFEAAGGESAAKAFRESDEKGYQQAETE 155 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~-----li~~~~g~~~i~eif~~~ge~~fr~~e~~ 155 (281)
++..|+++|+|||||||+++.|++.+++.++|+|. +..+..|.....++|...|+..++..+..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~ 106 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQC 106 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHH
Confidence 45789999999999999999999999877666554 66666662233467777787666655544
No 101
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.88 E-value=1.5e-09 Score=93.38 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=40.0
Q ss_pred CCcEEEEEcC-HHHHHhh-hcCCCCC-cChHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHH
Q 023493 186 HGISLWIDVP-PGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLK 262 (281)
Q Consensus 186 ~~~vV~L~~s-~e~l~~R-~~R~r~~-~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~ 262 (281)
..++||+..| .+++.+| .+|+... ++....+.....+. ..+..+|++|.++ +.++++.+|..
T Consensus 120 ~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~-~~~~~~d~vivN~--------------~~~~~~~~l~~ 184 (208)
T 3tau_A 120 EGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEI-EMMASYDYAVVND--------------VVANAVQKIKG 184 (208)
T ss_dssp TSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHH-HHGGGSSEEEECS--------------SHHHHHHHHHH
T ss_pred CeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhhccCCEEEECc--------------CHHHHHHHHHH
Confidence 3467888866 8888888 7776543 23334454443332 2334589888752 59999999998
Q ss_pred HHHHH
Q 023493 263 EIEKL 267 (281)
Q Consensus 263 ~i~~~ 267 (281)
.+...
T Consensus 185 ~i~~~ 189 (208)
T 3tau_A 185 IVETE 189 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 102
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.87 E-value=1.1e-07 Score=83.06 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=26.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-CCce
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYY 121 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l-~~~~ 121 (281)
+++.|+|.|++||||||+++.|++.+ ++.+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 46889999999999999999999999 5543
No 103
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.83 E-value=1.9e-08 Score=98.32 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=32.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC-------ceecCch
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRY-------YYFDSDS 126 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~-------~~~d~D~ 126 (281)
++.+|+|+|++||||||||++||++|+. .++|.|.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5789999999999999999999999986 6889887
No 104
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.79 E-value=1.7e-08 Score=85.35 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=27.8
Q ss_pred cEEEEE-cCHHHHHhh-hcCCCC-CcChHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 188 ISLWID-VPPGMVARM-DHSGFP-ESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 188 ~vV~L~-~s~e~l~~R-~~R~r~-~~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
++||+. ++++++.+| ..|+.. .++....+...+.+ ...|..+|++|++ + ++++++.+|.+.+
T Consensus 120 ~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~-~~~~~~~d~vI~n-------------~-~~e~~~~~i~~~l 184 (207)
T 2j41_A 120 LFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKE-VEMMNLYDYVVVN-------------D-EVELAKNRIQCIV 184 (207)
T ss_dssp EEEEEECCC---------------------------CG-GGGGGGCSEEEEC-------------S-SHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhccccCCEEEEC-------------C-CHHHHHHHHHHHH
Confidence 556665 568899999 666533 22333334443322 2334568988874 3 8999999999998
Q ss_pred HHH
Q 023493 265 EKL 267 (281)
Q Consensus 265 ~~~ 267 (281)
...
T Consensus 185 ~~~ 187 (207)
T 2j41_A 185 EAE 187 (207)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 105
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.72 E-value=4.6e-09 Score=97.17 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=60.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHHHHhCCCC--------------------hHHHHHhhhhhhHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES--------------------AAKAFRESDEKGYQQAE 153 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~~~~g~~~--------------------i~eif~~~ge~~fr~~e 153 (281)
+.|+|+|++||||||+|+.||+.+++.+++.|.+..-. | ++ +.+++..++...|++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~-~-~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a 83 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYR-G-MDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA 83 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBT-T-CCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhc-C-CCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence 47999999999999999999999999999999874211 1 21 12223444566788888
Q ss_pred HHHHHHHhcCCCeEEEeCCce
Q 023493 154 TEVLKQLSSMGRLVVCAGNGA 174 (281)
Q Consensus 154 ~~vl~~l~~~~~~VIa~G~g~ 174 (281)
..++..+...+..+|.+||+.
T Consensus 84 ~~~i~~i~~~g~~~IlvGGt~ 104 (323)
T 3crm_A 84 LAAMAKATARGRIPLLVGGTM 104 (323)
T ss_dssp HHHHHHHHHTTCEEEEEESCH
T ss_pred HHHHHHHHHcCCeEEEECCch
Confidence 888888877778888888654
No 106
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.70 E-value=2.3e-08 Score=90.81 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=30.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLV 128 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~li 128 (281)
++..|.|+|++||||||+++.|++.+| +.++|+|++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 457899999999999999999999888 7889999876
No 107
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.66 E-value=2.6e-07 Score=81.13 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=31.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCc----------eecCchH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----------YFDSDSL 127 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~----------~~d~D~l 127 (281)
+|..|.|+|++||||||+++.|+..+|.. +++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 57889999999999999999999988865 5666654
No 108
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.63 E-value=2.3e-08 Score=93.09 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=61.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchH--HHHH------------hCCCC-----hHHHHHhhhhhhHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA------------AGGES-----AAKAFRESDEKGYQQAET 154 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l--i~~~------------~g~~~-----i~eif~~~ge~~fr~~e~ 154 (281)
..|+|+|++||||||+|+.||+.++..++++|++ .... .+ .+ +.+.....+...|.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~-v~hhl~di~~~~~~~~~~dF~~~a~ 86 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEG-IPHYMIDILPPDASFSAYEFKKRAE 86 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTT-CCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHH-HHHHHHHHhCCccccCHHHHHHHHH
Confidence 4899999999999999999999999999999987 2211 11 10 111111223345666666
Q ss_pred HHHHHHhcCCCeEEEeCCceeechhhHHhccCCcEEEEE-cCHH
Q 023493 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWID-VPPG 197 (281)
Q Consensus 155 ~vl~~l~~~~~~VIa~G~g~v~~~~~~~~L~~~~vV~L~-~s~e 197 (281)
..+..+...+..+|.+||....... +..++.+|.+ ++++
T Consensus 87 ~~i~~i~~~g~~~IlvGGt~ly~~~----l~~~l~~~~~~~d~~ 126 (340)
T 3d3q_A 87 KYIKDITRRGKVPIIAGGTGLYIQS----LLYNYAFEDESISED 126 (340)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHH----HHBCSCCC---CCHH
T ss_pred HHHHHHHhCCCcEEEECChhhhHHH----HHhcccccCCCCChH
Confidence 6666666556777777765533222 2234447788 8887
No 109
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.61 E-value=1.4e-07 Score=80.81 Aligned_cols=36 Identities=28% Similarity=0.139 Sum_probs=29.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCch
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDS 126 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~ 126 (281)
-+|..|.|+|++||||||+++.|+..+. ..++..|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 4688999999999999999999998774 34555544
No 110
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.59 E-value=4.5e-08 Score=82.05 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=25.4
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.++|..++|+|++||||||+++.|+..+.
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36789999999999999999999998653
No 111
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.57 E-value=8.8e-09 Score=87.67 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
+.|+|+|++||||||+++.|++.++.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998853
No 112
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.56 E-value=3e-09 Score=99.56 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=55.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCce--------------------ecCchHHHHHhCCCChHHHHHhhhhhhHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYY--------------------FDSDSLVFEAAGGESAAKAFRESDEKGYQQAE 153 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~--------------------~d~D~li~~~~g~~~i~eif~~~ge~~fr~~e 153 (281)
.+|+|+|+|||||||+++.||+.++++| +|+|..+++..| +++.++|...|+ .|+..|
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g-~~i~~if~~~ge-~fr~~E 102 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQP-NKVAEMIENQGL-FKDHVE 102 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCH-HHHHHHHHTTTC-CGGGTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhC-ccHHHHHHHhcc-cchHHH
Confidence 4599999999999999999999999999 999999988888 889999999999 899877
Q ss_pred HHH
Q 023493 154 TEV 156 (281)
Q Consensus 154 ~~v 156 (281)
...
T Consensus 103 ~~~ 105 (359)
T 2ga8_A 103 DVN 105 (359)
T ss_dssp CTT
T ss_pred hhh
Confidence 643
No 113
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.53 E-value=8.7e-08 Score=81.70 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=29.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh---CCc--eecCchH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSL 127 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l---~~~--~~d~D~l 127 (281)
-++..|.|+|++||||||+++.|+..+ +.. +++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 457899999999999999999999865 544 3455654
No 114
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.52 E-value=7.9e-08 Score=80.87 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=25.6
Q ss_pred CCcEEEEEcCH-HHHHhh-hcCCCCCc-ChHHHHHHHHHHhhccc-cCCcEEEEcCccccccccCCCCCCCHHHHHHHHH
Q 023493 186 HGISLWIDVPP-GMVARM-DHSGFPES-EVLPQLFALYKEMRDGY-ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVL 261 (281)
Q Consensus 186 ~~~vV~L~~s~-e~l~~R-~~R~r~~~-~~~~~l~~~~~~r~~~y-~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il 261 (281)
...+||+.+|. +.+.+| ..|+...+ .....+.....+....+ ..+|++|.+ + +.++++.++.
T Consensus 114 ~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~~~~~~~d~vi~n-------------d-~~~~a~~~l~ 179 (186)
T 3a00_A 114 NARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVN-------------D-DLDKAYKELK 179 (186)
T ss_dssp CCEEEEEECSCC---------------------------------CCCCSEEEEC-------------S-SHHHHHHHHH
T ss_pred CeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCcEEEEC-------------c-CHHHHHHHHH
Confidence 45789999966 899999 77776532 23334444333322121 347888875 2 6888888887
Q ss_pred HHHH
Q 023493 262 KEIE 265 (281)
Q Consensus 262 ~~i~ 265 (281)
..+.
T Consensus 180 ~~i~ 183 (186)
T 3a00_A 180 DFIF 183 (186)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7663
No 115
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.44 E-value=9.8e-08 Score=82.86 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=37.0
Q ss_pred cEEEEEc-CHHHHHhh-hcCCCC-CcChHHHHHHHHHHhhccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHH
Q 023493 188 ISLWIDV-PPGMVARM-DHSGFP-ESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 264 (281)
Q Consensus 188 ~vV~L~~-s~e~l~~R-~~R~r~-~~~~~~~l~~~~~~r~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i 264 (281)
..||+.. +.+.+.+| ..|+.. .++....+..+..+.. .+..+|++|++ + +++++..++.+.+
T Consensus 142 ~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~-~~~~~d~vI~n-------------~-~~e~~~~~l~~~i 206 (231)
T 3lnc_A 142 VSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEIS-HCEAYDYVIVN-------------E-DIEETADRISNIL 206 (231)
T ss_dssp EEEEEECSCHHHHHHC--------------CHHHHHHHHT-TGGGSSEEEEC-------------S-SHHHHHHHHHHHH
T ss_pred EEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh-hhcCCeEEEEC-------------c-CHHHHHHHHHHHH
Confidence 4566655 78888888 666543 2334445555554432 33468999985 2 6999999998888
Q ss_pred HHH
Q 023493 265 EKL 267 (281)
Q Consensus 265 ~~~ 267 (281)
...
T Consensus 207 ~~~ 209 (231)
T 3lnc_A 207 RAE 209 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 116
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.43 E-value=1e-06 Score=80.27 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=30.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC-------CceecCchH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSL 127 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~-------~~~~d~D~l 127 (281)
-+|..|.|+|++||||||+++.|+..++ +.++++|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 4678999999999999999999998776 556666654
No 117
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.42 E-value=2.7e-07 Score=81.86 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=31.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecCchHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li~ 129 (281)
+.|.|+|++||||||+++.|++.+|++.+..++.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~ 37 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIK 37 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHH
Confidence 579999999999999999999999999887665443
No 118
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.32 E-value=1.2e-05 Score=69.33 Aligned_cols=153 Identities=8% Similarity=0.053 Sum_probs=81.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC---CceecCchHHHHH----hCCCChHHHHHhhh-hhhHHHHHH----H----
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVFEA----AGGESAAKAFRESD-EKGYQQAET----E---- 155 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~---~~~~d~D~li~~~----~g~~~i~eif~~~g-e~~fr~~e~----~---- 155 (281)
+.++|.|+|+|||||+|+|+.|.+.+| ++.+...+.+++. .| .+..+++.... .+.+|..-. +
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~g-l~~~~~l~~~~ykE~~R~~m~~~g~~~R~~ 88 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHG-LNFQRLLDTSTYKEAFRKDMIRWGEEKRQA 88 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTT-CCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcC-CCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999999998885 6678877766642 22 22222211000 000111000 0
Q ss_pred ---H-HHHHhc--CCCeEEEeCCceeechhhHHhcc---C--CcEEEEEcCHHHHHhh-hcCCCCCcChHHHHHHHHHHh
Q 023493 156 ---V-LKQLSS--MGRLVVCAGNGAVQSSANLALLR---H--GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEM 223 (281)
Q Consensus 156 ---v-l~~l~~--~~~~VIa~G~g~v~~~~~~~~L~---~--~~vV~L~~s~e~l~~R-~~R~r~~~~~~~~l~~~~~~r 223 (281)
+ +..+.. ....+|.+| +-.....++++ . -++|.+.+|++++.+| ..++...++.. . +--
T Consensus 89 d~~~~~~~~~~~~~~~~vII~d---vR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~Dd~e--s----E~g 159 (202)
T 3ch4_B 89 DPGFFCRKIVEGISQPIWLVSD---TRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAE--S----ECG 159 (202)
T ss_dssp CTTTTHHHHSBTCCCSEEEECC---CCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTTTTSH--H----HHT
T ss_pred CchHHHHHHHHhcCCCcEEEeC---CCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhccccccccc--c----ccC
Confidence 0 111111 123344443 22233344454 1 2469999999999999 32222221211 1 110
Q ss_pred hccccCCcEEEEcCccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 023493 224 RDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 267 (281)
Q Consensus 224 ~~~y~~ad~~Id~~~~a~~l~~~dts~~speeva~~Il~~i~~~ 267 (281)
-..+..+|++|.|+ .+.++....+.+.+...
T Consensus 160 L~~~~~~D~vI~Nd-------------gt~eel~~~v~~ll~~~ 190 (202)
T 3ch4_B 160 LDNFGDFDWVIENH-------------GVEQRLEEQLENLIEFI 190 (202)
T ss_dssp TTTCCCCSEEEEEC-------------SCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCEEEEeC-------------CCHHHHHHHHHHHHHHH
Confidence 11124589999974 58888877776655444
No 119
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.31 E-value=3.2e-07 Score=78.33 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
+.|+|+||+||||||+.+.|.+.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999987753
No 120
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.12 E-value=3.2e-06 Score=77.85 Aligned_cols=36 Identities=31% Similarity=0.255 Sum_probs=33.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
+++.|+|+||+||||||++..||+.++..++++|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 567899999999999999999999999999999986
No 121
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.10 E-value=4e-06 Score=77.30 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=27.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC-------CceecCchH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSL 127 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~-------~~~~d~D~l 127 (281)
..|.|+|++||||||+++.|+..++ ..++..|.+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4899999999999999999998875 334666664
No 122
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.05 E-value=2.2e-05 Score=71.91 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=24.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..|.|+|++||||||+++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 568899999999999999999999765
No 123
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.04 E-value=1.7e-05 Score=73.58 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=26.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
.+++.|+|.|+.||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45789999999999999999999999864
No 124
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.98 E-value=3.3e-05 Score=67.08 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=24.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.+|..++|+||+||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 5789999999999999999999998764
No 125
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.94 E-value=2.2e-05 Score=66.66 Aligned_cols=26 Identities=31% Similarity=0.156 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..++|+|++||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 47889999999999999999998765
No 126
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.87 E-value=1.2e-05 Score=73.93 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=32.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
.++.|+|+||+||||||++..||+.++..+++.|..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 356899999999999999999999999999998874
No 127
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.80 E-value=1.6e-05 Score=75.50 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=51.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH--HHHH------------hCC----CChHHHHHhhhhhhHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA------------AGG----ESAAKAFRESDEKGYQQAET 154 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l--i~~~------------~g~----~~i~eif~~~ge~~fr~~e~ 154 (281)
.+.|+|+||+||||||++..||+.++..++++|.. ++.+ .|- .++.++-..+....|.+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~ 81 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM 81 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence 46789999999999999999999999999998873 2110 010 00011111112234666556
Q ss_pred HHHHHHhcCCCeEEEeCC
Q 023493 155 EVLKQLSSMGRLVVCAGN 172 (281)
Q Consensus 155 ~vl~~l~~~~~~VIa~G~ 172 (281)
.++..+...+...|-+||
T Consensus 82 ~~i~~i~~~g~~pilVGG 99 (409)
T 3eph_A 82 NAIEDIHRRGKIPIVVGG 99 (409)
T ss_dssp HHHHHHHTTTCEEEEECS
T ss_pred HHHHHHHhcCCCEEEECC
Confidence 677777766666666664
No 128
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.73 E-value=5.5e-05 Score=62.56 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcc---cCCcEEEEEccCCCCHHHHHHHHHHHh----C--CceecCchHH
Q 023493 79 AVKKKAADISTE---LKGTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDSLV 128 (281)
Q Consensus 79 ~~~~~~~e~~~~---~~~~~i~l~G~~GsGKstvak~La~~l----~--~~~~d~D~li 128 (281)
...+.+.++... .+|..++|+|++||||||+++.++..+ | +.+++..+++
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 344456665543 347899999999999999999999766 4 3445554444
No 129
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.70 E-value=3.1e-05 Score=67.81 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=28.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
+..|+|+|+|||||||+++.++..++.+++..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 56799999999999999999999999777643
No 130
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.65 E-value=3e-05 Score=69.91 Aligned_cols=32 Identities=6% Similarity=-0.123 Sum_probs=28.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
+..++|.|+||+|||++|+.+|+.+|.+++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45788889999999999999999999888654
No 131
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=97.65 E-value=0.00019 Score=66.63 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=27.4
Q ss_pred ccCCcEEEEEccCCCCHHHHH-HHHHHHhCCc
Q 023493 90 ELKGTSVFLVGMNNAIKTHLG-KFLADALRYY 120 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstva-k~La~~l~~~ 120 (281)
..+++.|+|.|+.||||||++ +.|++.++..
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence 466889999999999999999 9999988743
No 132
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.62 E-value=6.4e-05 Score=68.45 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=55.6
Q ss_pred chhhhhccCCccccccccccccCcc--cccccCCCcch----HHHHHHHHHhccc---CCcEEEEEccCCCCHHHHHHHH
Q 023493 43 LQYSIISRKPRITTRSIADDTTSNT--VTKVAAEDPSF----AVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFL 113 (281)
Q Consensus 43 ~~~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~----~~~~~~~e~~~~~---~~~~i~l~G~~GsGKstvak~L 113 (281)
...+...|..+.+.+.++.+.++.. ..++..|+... .+...+.++.... .+..++|.|++|+|||++++.+
T Consensus 93 ~~~~~~~r~~~~~~~~~~~~~l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ai 172 (308)
T 2qgz_A 93 TKELVEAQKQAAISERIQLVSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAM 172 (308)
T ss_dssp -------CCCCHHHHTEEEESSCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHH
Confidence 3345667777778888888877531 25677777642 2333455555433 3689999999999999999999
Q ss_pred HHHhC----Cc--eecCchHHHHHh
Q 023493 114 ADALR----YY--YFDSDSLVFEAA 132 (281)
Q Consensus 114 a~~l~----~~--~~d~D~li~~~~ 132 (281)
+..+. +. ++....++.+..
T Consensus 173 a~~~~~~~g~~v~~~~~~~l~~~l~ 197 (308)
T 2qgz_A 173 AHELSEKKGVSTTLLHFPSFAIDVK 197 (308)
T ss_dssp HHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEEHHHHHHHHH
Confidence 97543 33 356655555443
No 133
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.60 E-value=9.1e-05 Score=67.39 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=29.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
.+..|+|.|+||+|||++|+.+|+.++.+++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 356799999999999999999999999888654
No 134
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.60 E-value=8.8e-05 Score=65.58 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=29.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
..+..++|.|+||+|||++++.+|+.++.+++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 457789999999999999999999999988764
No 135
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=7.1e-05 Score=71.57 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=30.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
-.++-|+|.||||||||++|+++|..+|++|+..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 3467799999999999999999999999998754
No 136
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.59 E-value=2.4e-05 Score=76.76 Aligned_cols=75 Identities=24% Similarity=0.235 Sum_probs=52.3
Q ss_pred ccCCccccccccccccCcccccccC--C---------Ccch----HHHHHHHH------HhcccCCcEEEEEccCCCCHH
Q 023493 49 SRKPRITTRSIADDTTSNTVTKVAA--E---------DPSF----AVKKKAAD------ISTELKGTSVFLVGMNNAIKT 107 (281)
Q Consensus 49 ~r~~~~~~~~~~~~~~~~~~~~~~~--~---------d~~~----~~~~~~~e------~~~~~~~~~i~l~G~~GsGKs 107 (281)
.+.++.+.|+|.+|-+..||..... + |.+. .++++..+ +....++..++|+|+||||||
T Consensus 43 ~~~e~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKT 122 (543)
T 3m6a_A 43 SSAESSVIRNYIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKT 122 (543)
T ss_dssp SCTTTTHHHHHHHHHHHSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHH
T ss_pred CCchHhHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHH
Confidence 4566778889988877777755432 1 1111 44444322 223467899999999999999
Q ss_pred HHHHHHHHHhCCceec
Q 023493 108 HLGKFLADALRYYYFD 123 (281)
Q Consensus 108 tvak~La~~l~~~~~d 123 (281)
|+++.+|..++.+++.
T Consensus 123 tlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 123 SLAKSIAKSLGRKFVR 138 (543)
T ss_dssp HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhcCCCeEE
Confidence 9999999999877643
No 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.59 E-value=9.1e-05 Score=66.82 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=34.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC--chHHHHHhC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~--D~li~~~~g 133 (281)
-.+..|+|.|+||||||++++.+|..++..++.. .++.....|
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g 91 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 91 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcC
Confidence 4578899999999999999999999999887643 455555444
No 138
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=8.4e-05 Score=71.21 Aligned_cols=34 Identities=26% Similarity=0.198 Sum_probs=30.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
-.++-|+|.||||||||++|+++|..+|++|+..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3467899999999999999999999999998754
No 139
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.54 E-value=6e-05 Score=65.53 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=28.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
.+..|+|.|+||+|||++++.+|+.++.+++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45679999999999999999999999988764
No 140
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00012 Score=70.15 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=30.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
-.++-|+|.||||||||.+|+++|..+|++|+..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3467899999999999999999999999988653
No 141
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.53 E-value=5.2e-05 Score=70.02 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=30.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCc
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D 125 (281)
.+..|+|.|+||||||++|+.+|+.++.+|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 5678999999999999999999999999998654
No 142
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.53 E-value=0.00013 Score=61.14 Aligned_cols=36 Identities=22% Similarity=0.119 Sum_probs=27.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh---CCc--eecCchHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVF 129 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l---~~~--~~d~D~li~ 129 (281)
..++|.|++|+||||+++.++..+ +.. +++...+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 789999999999999999999876 333 355544443
No 143
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.52 E-value=0.00015 Score=64.60 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=28.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
.+..++|.|+||+||||+++.++..++.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 46889999999999999999999999987754
No 144
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00012 Score=70.00 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=29.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
.++-|+|.||||||||.+|+++|..++++|+..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 467899999999999999999999999988753
No 145
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.49 E-value=6.4e-05 Score=72.17 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=31.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCch
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~ 126 (281)
..+..|+|+|+||+||||+|+.||+.++++++..|.
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 456789999999999999999999999999987653
No 146
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00014 Score=69.01 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=30.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
-.++-|+|.||||||||.+|+++|..++++|+..
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 3467799999999999999999999999998754
No 147
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.44 E-value=0.00026 Score=57.39 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=24.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-.+..++|+|++|+|||++++.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999986
No 148
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.43 E-value=0.00013 Score=58.52 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 79 ~~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+.+.+..++. .+..|+|.|+||+|||++|+.+++..
T Consensus 12 ~~~~~~~~~a~--~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 12 QYRRRLQQLSE--TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HHHHHHHHHTT--CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 33333444433 56779999999999999999999865
No 149
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.42 E-value=8.9e-05 Score=68.70 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=29.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCc
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D 125 (281)
.+..|+|+|+||+|||++|+.+|+.++.+++..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 4567999999999999999999999998887543
No 150
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.40 E-value=0.00015 Score=58.88 Aligned_cols=27 Identities=22% Similarity=0.092 Sum_probs=24.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
..+..++|+|++|+|||++++.+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999987
No 151
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.40 E-value=8.8e-05 Score=66.25 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=24.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-.+..++|+|+||+|||++++.+|+.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999888
No 152
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.39 E-value=0.00011 Score=65.37 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=28.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
.+..++|+|+||+|||++++.+++.++.+++.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 46789999999999999999999999987753
No 153
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.38 E-value=9.6e-05 Score=65.24 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=29.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
-....++|+|+||+|||++|+.+++.++++++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3457899999999999999999999999887643
No 154
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.37 E-value=6.7e-05 Score=65.85 Aligned_cols=32 Identities=31% Similarity=0.328 Sum_probs=27.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
+..++|.|+||+|||++++.+|+.++.+++..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 45588999999999999999999999877643
No 155
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00024 Score=68.42 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=30.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
-.++-|+|.||||||||++|+++|..++++|+..
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 3578899999999999999999999999998753
No 156
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.35 E-value=0.00031 Score=64.15 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=27.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-CCcee
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYF 122 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l-~~~~~ 122 (281)
+++.|+|.|+||+|||++|+.+|..+ +..++
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 34789999999999999999999998 66664
No 157
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.34 E-value=0.00023 Score=68.09 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=29.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC--CceecC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDS 124 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~--~~~~d~ 124 (281)
.++..++|.||||+|||++|+.+|+.++ ++|+..
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 4567899999999999999999999999 777653
No 158
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.33 E-value=0.00027 Score=65.35 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=28.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
+..|+|.|+||+|||++|+.+|..++.+++..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 46799999999999999999999999888654
No 159
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.33 E-value=0.00015 Score=62.29 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=26.9
Q ss_pred HHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 85 ~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.|-.+.++|+.|+|+||+||||||+.+.|.+.+.
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3444668899999999999999999999998764
No 160
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.29 E-value=0.00016 Score=58.84 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=28.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCc
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD 125 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D 125 (281)
++..++|+|++|+||||+++.++..+ | ..+++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 88999999999999999999999876 5 3445443
No 161
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.27 E-value=0.00044 Score=63.89 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=28.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
.+..|+|+|+||+|||++++.+|..++.+++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 46789999999999999999999999988764
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.24 E-value=0.00033 Score=59.38 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=32.0
Q ss_pred HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC-----CceecCchH
Q 023493 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (281)
Q Consensus 84 ~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~-----~~~~d~D~l 127 (281)
+..+...-.+..++|+|++|+||||+++.+++.++ +.+++.+.+
T Consensus 43 l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 43 LKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp HHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 33333333678999999999999999999998764 245555443
No 163
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.24 E-value=0.00045 Score=64.40 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=29.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
.+..|+|.|+||+|||++|+.+|..++.+++.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 46789999999999999999999999988764
No 164
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.21 E-value=0.00013 Score=60.24 Aligned_cols=36 Identities=19% Similarity=0.036 Sum_probs=28.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li 128 (281)
-+|..+.|+|++||||||+++.+. .|...++.|.+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~ 42 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCR 42 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHH
Confidence 368899999999999999999864 345566666554
No 165
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.20 E-value=0.00014 Score=58.38 Aligned_cols=41 Identities=10% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 79 ~~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
.+.+.+..+.. .+..|+|.|+||+|||++|+.++...+ +++
T Consensus 15 ~l~~~~~~~~~--~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~ 55 (143)
T 3co5_A 15 EMNREVEAAAK--RTSPVFLTGEAGSPFETVARYFHKNGT-PWV 55 (143)
T ss_dssp HHHHHHHHHHT--CSSCEEEEEETTCCHHHHHGGGCCTTS-CEE
T ss_pred HHHHHHHHHhC--CCCcEEEECCCCccHHHHHHHHHHhCC-CeE
Confidence 44444444443 456799999999999999999998766 444
No 166
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.18 E-value=0.00021 Score=63.88 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=26.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
.-++|+|+|||||||+++.||..++..++.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 349999999999999999999998876553
No 167
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.17 E-value=0.00029 Score=61.38 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=26.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
..++|+|+|||||||+++.++..++..++..
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 3499999999999999999999888766543
No 168
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.15 E-value=0.00027 Score=64.04 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=29.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
....|+|+|+||+|||++++.+++.++.+++..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 446799999999999999999999999887654
No 169
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.15 E-value=0.00024 Score=59.58 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=24.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCce
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYY 121 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~ 121 (281)
+.+.|+|++||||||+.+.|+..+++.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 4689999999999999999999887543
No 170
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.13 E-value=0.00064 Score=69.74 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=30.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecCc
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D 125 (281)
.++-|+|.||||||||++|+.+|..+|.+++..+
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 4678999999999999999999999999887543
No 171
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.13 E-value=0.00067 Score=65.63 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=28.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
++.|+|+|+||+|||++++.+|..++.+|+..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 45699999999999999999999999988754
No 172
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.11 E-value=0.00033 Score=64.11 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=26.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCce
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~ 121 (281)
...++|+|+||+||||+++.+|..++..+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 36799999999999999999999998765
No 173
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.11 E-value=0.00025 Score=61.23 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=31.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
..++.|+|+|++|+||||+|..|+++.+ .++..|..
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 5678899999999999999999999865 88887764
No 174
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.09 E-value=0.00055 Score=56.78 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=26.2
Q ss_pred HHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 83 ~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
...+.....+...++|+|++|+|||++++.+++.+
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp HHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33333333344459999999999999999999876
No 175
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.08 E-value=0.0006 Score=65.49 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=33.2
Q ss_pred HHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh----------CCceecCc
Q 023493 82 KKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSD 125 (281)
Q Consensus 82 ~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l----------~~~~~d~D 125 (281)
++..++.......+++|+|+||+|||++++.||+.+ +..++..|
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 344444444566789999999999999999999987 66666554
No 176
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.07 E-value=0.00048 Score=58.37 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=24.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
-+|..+.|+|++||||||+.+.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999999998764
No 177
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.07 E-value=0.00081 Score=64.14 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=28.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh-CCcee--cCchHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYF--DSDSLVFE 130 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l-~~~~~--d~D~li~~ 130 (281)
....|+|.|+||+|||++|+.+|..+ +.+++ +..++...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 45789999999999999999999998 66664 44455443
No 178
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.02 E-value=0.00017 Score=68.98 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=66.3
Q ss_pred cCCCC--CCCChhhhhhhhcccCcccccchhhhhccCCccccccccccccCcccccccCCCcch----HHHHHHHHHhcc
Q 023493 17 ITPKG--LKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSF----AVKKKAADISTE 90 (281)
Q Consensus 17 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~e~~~~ 90 (281)
|+..+ ..|.+.+..|++. +...|-.+.+.++++...++ ..++.++|+.. .+++...++.+.
T Consensus 21 ~~e~~~~~~~~e~~~~Ll~a-----------dv~~~~~~~~~~~vk~~~~~--~~~~~~~~~~~~~~~~~~~~l~~ll~~ 87 (432)
T 2v3c_C 21 VDKKLIKEVIKDIQRALIQA-----------DVNVKLVLKMSKEIERRALE--EKTPKGLSKKEHIIKIVYEELVKLLGE 87 (432)
T ss_dssp CCSSTTHHHHHHHHHHHHHT-----------CCCHHHHHHHTHHHHHHHSS--SCSSCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHhcc--ccccccCChHHHHHHHHHHHHHHHhCC
Confidence 44444 2456777788887 77777777777777776654 34567788764 344445555543
Q ss_pred ----c--C---CcEEEEEccCCCCHHHHHHHHHHHh-----CCceecCch
Q 023493 91 ----L--K---GTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (281)
Q Consensus 91 ----~--~---~~~i~l~G~~GsGKstvak~La~~l-----~~~~~d~D~ 126 (281)
+ . +..|.|+|++|+||||++..||..+ ...++|+|.
T Consensus 88 ~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 88 EAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp SCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 2 1 3589999999999999999999765 355677764
No 179
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.01 E-value=0.0005 Score=60.91 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=26.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
..++|+|++||||||+++.++..++..++..
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 3499999999999999999999888766544
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.00043 Score=67.19 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=28.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
...++|+|+||+||||+++.+|+.+|+.++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 4789999999999999999999999988764
No 181
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.00 E-value=0.00043 Score=62.57 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=29.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---CCce--ecCchHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSDSLV 128 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~~~~--~d~D~li 128 (281)
.+..++|.|+||+||||+++.++..+ +.++ ++.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 45789999999999999999999877 6554 5555543
No 182
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.00 E-value=0.00039 Score=59.76 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999999999865
No 183
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.99 E-value=0.00086 Score=61.35 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=24.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-.+..++|.|++|+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999999887
No 184
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.95 E-value=0.00037 Score=63.12 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=27.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
+..++|.|+||+|||++++.+++.++.+++
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 568999999999999999999999997764
No 185
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.91 E-value=0.00048 Score=61.73 Aligned_cols=31 Identities=23% Similarity=0.154 Sum_probs=27.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
....++|+|++|+|||++++.+++.++.+++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4577999999999999999999999998764
No 186
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.88 E-value=0.0014 Score=66.40 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh----------CCceecCch
Q 023493 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSDS 126 (281)
Q Consensus 79 ~~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l----------~~~~~d~D~ 126 (281)
...++..++.......+++|+|+||+|||++++.||+.+ +..++..|-
T Consensus 187 ~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 187 KEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 333444555544567789999999999999999999997 777776654
No 187
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.87 E-value=0.00064 Score=62.13 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=26.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
..+..++|.|+||+|||++++.+++.++.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34579999999999999999999999985
No 188
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.83 E-value=0.00067 Score=61.31 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=30.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC-------Ccee-cCchHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-------YYYF-DSDSLV 128 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~-------~~~~-d~D~li 128 (281)
-++..|.|+|++||||||+++.|++.++ ...+ ..|.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 4578899999999999999999998775 2334 667653
No 189
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.83 E-value=0.00085 Score=62.98 Aligned_cols=33 Identities=18% Similarity=0.028 Sum_probs=29.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
-++..|+|+|++||||||+++.|+..++..++.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 567899999999999999999999988876654
No 190
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.81 E-value=0.00071 Score=58.05 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La 114 (281)
-+|..+.|+|++||||||+++.++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 579999999999999999999988
No 191
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.81 E-value=0.00074 Score=64.66 Aligned_cols=31 Identities=23% Similarity=0.073 Sum_probs=28.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
..++|.|+||+||||+++.+++.++..++..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 6799999999999999999999999887654
No 192
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.00085 Score=61.59 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=25.9
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.-++.+++|.|+||+|||++++.+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999988
No 193
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.79 E-value=0.0013 Score=54.95 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
+..++|+|++|+||||+++.+++.++.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 457999999999999999999988764
No 194
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.79 E-value=0.00061 Score=62.02 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=24.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-.+..++|+|++|+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999887
No 195
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.78 E-value=0.00087 Score=55.17 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=25.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 578899999999999999999999876
No 196
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.77 E-value=0.0013 Score=57.46 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.+..|+|+|++|+|||++|+.+++.++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 457899999999999999999998764
No 197
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.75 E-value=0.0016 Score=59.36 Aligned_cols=23 Identities=22% Similarity=0.050 Sum_probs=22.2
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 023493 95 SVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l 117 (281)
.++|+|++|+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999888
No 198
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.75 E-value=0.00088 Score=64.93 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=29.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
-.+..|+|.|+||+|||++|+.++..++.+|+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3467799999999999999999999999887653
No 199
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.73 E-value=0.00082 Score=59.84 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=22.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l 117 (281)
..++|+|+||+|||++|+.+++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 200
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.72 E-value=0.00082 Score=56.88 Aligned_cols=26 Identities=23% Similarity=0.056 Sum_probs=23.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+++.|+..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999863
No 201
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.71 E-value=0.002 Score=57.99 Aligned_cols=32 Identities=13% Similarity=-0.026 Sum_probs=26.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~ 124 (281)
+..+++.|+||+|||++++.+++.++..++..
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 35667778899999999999999999777643
No 202
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.70 E-value=0.001 Score=60.42 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=27.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh------CCceec
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL------RYYYFD 123 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l------~~~~~d 123 (281)
-.+..++|+|++|+||||+++.+++.+ ++.++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~ 81 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVY 81 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 346789999999999999999999877 665543
No 203
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.69 E-value=0.00094 Score=57.86 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=25.7
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
...++|.||||+||||+|..|++.++...+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 457999999999999999999998875444
No 204
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.65 E-value=0.0013 Score=55.55 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..++|+|++||||||+++.++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999854
No 205
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.63 E-value=0.0013 Score=63.91 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=26.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
+.|+|+|+|||||||+++.++..++.+++.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 459999999999999999999998877654
No 206
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.61 E-value=0.0012 Score=55.92 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l 117 (281)
|..+.|+|++||||||+.+.|+..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4678999999999999999999876
No 207
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.61 E-value=0.00099 Score=68.32 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=30.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCc
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D 125 (281)
-.+..|+|+|+|||||||+++.||..++..++..+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 45778999999999999999999999998776543
No 208
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.60 E-value=0.001 Score=58.15 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=22.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999999974
No 209
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.59 E-value=0.002 Score=61.32 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=33.1
Q ss_pred HHHHHhcccC-CcEEEEEccCCCCHHHHHHHHHHHh-----CCc--eecCchHH
Q 023493 83 KAADISTELK-GTSVFLVGMNNAIKTHLGKFLADAL-----RYY--YFDSDSLV 128 (281)
Q Consensus 83 ~~~e~~~~~~-~~~i~l~G~~GsGKstvak~La~~l-----~~~--~~d~D~li 128 (281)
.+..++.... +..++|.|++|+||||+++.++..+ +.. +++...+.
T Consensus 119 ~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 119 AALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp HHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred HHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 3555554322 6789999999999999999999877 544 45554443
No 210
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.57 E-value=0.0011 Score=57.49 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3688999999999999999999974
No 211
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.57 E-value=0.0014 Score=59.74 Aligned_cols=27 Identities=26% Similarity=0.210 Sum_probs=24.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 578999999999999999999999765
No 212
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.56 E-value=0.0033 Score=55.67 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=22.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l 117 (281)
..++|.|++|+|||++++.+++.+
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCcCHHHHHHHHHHHh
Confidence 349999999999999999999886
No 213
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.0025 Score=57.49 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=22.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
..++|.|+||+||||+++.+++.++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4499999999999999999998764
No 214
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.0024 Score=57.94 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+...++|+|++|+||||+++.++..+
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33349999999999999999999865
No 215
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.50 E-value=0.0013 Score=57.57 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=22.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999999974
No 216
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.49 E-value=0.0016 Score=54.67 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=29.0
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhC--CceecCch
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDS 126 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l~--~~~~d~D~ 126 (281)
..+|..+.|+|++||||||+++.++...+ ..|++.+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 35689999999999999999999986333 44566543
No 217
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.0039 Score=55.43 Aligned_cols=27 Identities=22% Similarity=0.112 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
+...++|.|++|+||||+++.+++.+.
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 444699999999999999999998863
No 218
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.47 E-value=0.002 Score=54.03 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=22.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|+.++++|+||+||||++..++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997666544
No 219
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.43 E-value=0.0018 Score=57.05 Aligned_cols=26 Identities=46% Similarity=0.506 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999999853
No 220
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.43 E-value=0.0015 Score=58.28 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3789999999999999999999974
No 221
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.42 E-value=0.0015 Score=58.62 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+--
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999999743
No 222
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.42 E-value=0.0021 Score=54.19 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=31.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li 128 (281)
..|.-|+|+|++|+||||+|..|.++ |+.++.-|...
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~ 50 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDVID 50 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEE
Confidence 46788999999999999999999885 99888766543
No 223
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.42 E-value=0.0019 Score=57.32 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=24.6
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.-+|..+.|+|++||||||+.+.|+..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4578899999999999999999998654
No 224
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.41 E-value=0.0015 Score=57.43 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999999753
No 225
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.41 E-value=0.0016 Score=57.05 Aligned_cols=26 Identities=35% Similarity=0.298 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999999753
No 226
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.41 E-value=0.0015 Score=57.93 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=23.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999998543
No 227
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.40 E-value=0.0016 Score=57.63 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999999743
No 228
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.39 E-value=0.0017 Score=56.49 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=23.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999997543
No 229
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.38 E-value=0.0021 Score=54.89 Aligned_cols=27 Identities=22% Similarity=0.101 Sum_probs=24.2
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
..+|..+.|+|++||||||+++.++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 357899999999999999999999973
No 230
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.37 E-value=0.0016 Score=57.11 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999999843
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.37 E-value=0.0017 Score=66.66 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=33.7
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceecC--chHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~--D~li~~~~g 133 (281)
.++-|+|.||||||||.+|+++|..++.+|+.. .+++....|
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vG 553 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 553 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCS
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccc
Confidence 356799999999999999999999999998864 345544444
No 232
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.36 E-value=0.0016 Score=56.33 Aligned_cols=26 Identities=35% Similarity=0.227 Sum_probs=23.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999999999999999743
No 233
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.36 E-value=0.0017 Score=55.76 Aligned_cols=26 Identities=31% Similarity=0.097 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999999853
No 234
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.36 E-value=0.0023 Score=58.21 Aligned_cols=26 Identities=35% Similarity=0.323 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..|.|+|++||||||+.+.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999999655
No 235
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.35 E-value=0.0021 Score=57.25 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999999863
No 236
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.35 E-value=0.0018 Score=57.75 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=23.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 478999999999999999999997543
No 237
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.34 E-value=0.0018 Score=57.85 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999997543
No 238
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.33 E-value=0.0018 Score=57.41 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999999754
No 239
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.30 E-value=0.0024 Score=58.01 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999654
No 240
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.0039 Score=56.74 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=21.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHhC
Q 023493 96 VFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 96 i~l~G~~GsGKstvak~La~~l~ 118 (281)
++|.|++|+||||+++.+|+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999998863
No 241
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.29 E-value=0.002 Score=57.16 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999999753
No 242
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.28 E-value=0.002 Score=56.86 Aligned_cols=26 Identities=35% Similarity=0.290 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 47889999999999999999999753
No 243
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.28 E-value=0.0013 Score=67.36 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=28.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCCceec
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~~~~d 123 (281)
.+..++|.|+|||||||+++.+|..++..++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 56779999999999999999999999877654
No 244
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.27 E-value=0.0042 Score=63.90 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=28.2
Q ss_pred HHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 82 KKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 82 ~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
++..++...-...+++|+|+||+||||+++.||..+
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 344444444456678999999999999999999987
No 245
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.26 E-value=0.0021 Score=57.13 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 37899999999999999999999743
No 246
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.26 E-value=0.0056 Score=54.29 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l 117 (281)
..++|.|++|+||||+++.+++.+
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 349999999999999999999886
No 247
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.26 E-value=0.0028 Score=56.40 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=24.9
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+.-+|..++|+|+||+||||+++.++..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999998543
No 248
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.25 E-value=0.0021 Score=57.69 Aligned_cols=27 Identities=37% Similarity=0.331 Sum_probs=23.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999999997543
No 249
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.25 E-value=0.0069 Score=61.18 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=28.8
Q ss_pred HHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 83 ~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
++.++.....+.+++|+|+||+|||++++.|++.+
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 34444444577889999999999999999999887
No 250
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.24 E-value=0.0031 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.070 Sum_probs=22.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+.|.|+|++||||||+...|+..|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999999765
No 251
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.21 E-value=0.0036 Score=56.53 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 79 ~~~~~~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+.+.+..++. .+..|+|+|+||+|||++|+.+++..
T Consensus 13 ~~~~~~~~~a~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 13 HLLNEIAMVAP--SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp HHHHHHHHHCS--TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhC--CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 34444444443 46789999999999999999999854
No 252
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.21 E-value=0.0016 Score=58.89 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=23.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
..|+|+|+||+|||++++.+++.++
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 3599999999999999999999886
No 253
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.20 E-value=0.0026 Score=56.91 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=29.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCceecCch
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~ 126 (281)
+..++|+|++|+||||+++.+++.+++.+++...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 4789999999999999999999998877777543
No 254
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.20 E-value=0.0028 Score=58.24 Aligned_cols=26 Identities=35% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..|.|+|++||||||+.+.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999654
No 255
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.19 E-value=0.0024 Score=56.48 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 37889999999999999999999753
No 256
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.14 E-value=0.0032 Score=57.32 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=27.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCch
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~ 126 (281)
++..|.|+|++||||||++..||..+ | +.+++.|.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46789999999999999999999655 3 34456654
No 257
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.13 E-value=0.0038 Score=53.27 Aligned_cols=35 Identities=17% Similarity=0.029 Sum_probs=27.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh-----CCceecCc
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSD 125 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l-----~~~~~d~D 125 (281)
.+|..++|+|+||+||||++..++... +..|++.+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 578999999999999999988877432 34455554
No 258
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.12 E-value=0.0036 Score=56.58 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=28.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh----C--CceecCch
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDS 126 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l----~--~~~~d~D~ 126 (281)
++..|.|+|++|+||||++..||..+ | +.+++.|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 57899999999999999999999544 4 34566665
No 259
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.12 E-value=0.0066 Score=55.11 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
+..++|.|++|+||||+++.+++.+++
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456899999999999999999998875
No 260
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.09 E-value=0.0034 Score=63.47 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=26.0
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
.++|+|+||+|||++|+.|++.++.+++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 6999999999999999999999997765
No 261
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.09 E-value=0.0033 Score=58.64 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=23.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+-
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCchHHHHHHHHhc
Confidence 3689999999999999999999984
No 262
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.09 E-value=0.003 Score=58.38 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=24.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~ 120 (281)
+..+.|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6889999999999999999999876543
No 263
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.08 E-value=0.004 Score=56.26 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHHHhcccCCcEEEEEccCCCCHHHHHHHHH
Q 023493 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 84 ~~e~~~~~~~~~i~l~G~~GsGKstvak~La 114 (281)
+.++...+.+..+.|+|++|+||||+.+.|+
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 3445555788999999999999999999998
No 264
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.06 E-value=0.0021 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l 117 (281)
+.+.|+|++||||||+++.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998765
No 265
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.05 E-value=0.0035 Score=54.92 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=21.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~ 116 (281)
..+.|+|++||||||+.+.|+.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999999853
No 266
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.04 E-value=0.0043 Score=54.88 Aligned_cols=26 Identities=35% Similarity=0.198 Sum_probs=23.6
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
..+|..+.|+|++||||||+++.++.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999999985
No 267
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.02 E-value=0.0015 Score=60.29 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.++.|+|.|+.||||||+++.|++.|+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999998875
No 268
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.02 E-value=0.0024 Score=62.06 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=24.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
..+..|+|+|+||+|||++|+.||..++
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 3467899999999999999999998874
No 269
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.00 E-value=0.0039 Score=58.07 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..|.|+|++||||||+.+.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 47899999999999999999999755
No 270
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.98 E-value=0.0039 Score=58.58 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+-
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHc
Confidence 3689999999999999999999984
No 271
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.98 E-value=0.004 Score=57.96 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+-
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3689999999999999999999984
No 272
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=95.97 E-value=0.002 Score=60.53 Aligned_cols=28 Identities=18% Similarity=0.066 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.+++.|+|.|+.||||||+++.|++.|.
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5678899999999999999999998875
No 273
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.97 E-value=0.0041 Score=57.98 Aligned_cols=25 Identities=32% Similarity=0.218 Sum_probs=22.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHC
Confidence 3689999999999999999999984
No 274
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.96 E-value=0.0035 Score=56.62 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+.-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999999999743
No 275
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.94 E-value=0.0042 Score=57.93 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+--
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcC
Confidence 36899999999999999999999843
No 276
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.94 E-value=0.0034 Score=52.99 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=23.4
Q ss_pred EEEEccCCCCHHHHHHHHHHHhCCc--eecC
Q 023493 96 VFLVGMNNAIKTHLGKFLADALRYY--YFDS 124 (281)
Q Consensus 96 i~l~G~~GsGKstvak~La~~l~~~--~~d~ 124 (281)
|+|+|++||||||+|..|+.. |.+ |+++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 789999999999999999976 643 4555
No 277
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.93 E-value=0.0051 Score=51.37 Aligned_cols=25 Identities=28% Similarity=0.080 Sum_probs=22.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l 117 (281)
...++|+|++||||||+.+.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4678999999999999999998764
No 278
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.90 E-value=0.0038 Score=55.58 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=22.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
|..+.|+|++||||||+.+.|+.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 889999999999999999999754
No 279
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.90 E-value=0.0045 Score=57.94 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+-
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 3689999999999999999999984
No 280
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.89 E-value=0.0026 Score=57.95 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 478999999999999999999997543
No 281
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.88 E-value=0.0047 Score=57.80 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+|..+.|+|++||||||+.+.|+-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHc
Confidence 789999999999999999999984
No 282
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.87 E-value=0.0041 Score=57.71 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=24.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+..+
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 468899999999999999999998654
No 283
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.85 E-value=0.0049 Score=57.64 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+--
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 47899999999999999999999843
No 284
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.84 E-value=0.0064 Score=54.44 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=23.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
...|+|.||||+|||++++.||..++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 447999999999999999999987544
No 285
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.83 E-value=0.004 Score=57.39 Aligned_cols=35 Identities=29% Similarity=0.248 Sum_probs=28.5
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHhC--CceecC
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDS 124 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l~--~~~~d~ 124 (281)
..++..++|.|+||+||||+|..++...| +.|++.
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 35677889999999999999999997544 457776
No 286
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.82 E-value=0.0052 Score=57.31 Aligned_cols=27 Identities=15% Similarity=0.071 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+|..|.|+|++||||||+.+.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999998654
No 287
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.82 E-value=0.0052 Score=59.71 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..|.|+|++||||||+.+.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 47899999999999999999999654
No 288
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.80 E-value=0.0036 Score=58.09 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+-
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCccHHHHHHHHHc
Confidence 3688999999999999999999984
No 289
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.78 E-value=0.012 Score=52.55 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=26.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhCC--ceecC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALRY--YYFDS 124 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~~--~~~d~ 124 (281)
..++|.|++|+||||+++.+++.++. .+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 68999999999999999999988754 34554
No 290
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.77 E-value=0.0054 Score=57.75 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=23.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhC
Confidence 4689999999999999999999984
No 291
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.76 E-value=0.0058 Score=56.95 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=24.5
Q ss_pred HhcccCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 87 ISTELKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 87 ~~~~~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
|...++|..+.|+|++|+||||+.+.|+.
T Consensus 209 L~~~~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 209 LEEALTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HHHHHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHhcCCCEEEEECCCCccHHHHHHHHhc
Confidence 33345789999999999999999999964
No 292
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.76 E-value=0.0079 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
...+|+|+.||||||+.++|.-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3788999999999999999987665
No 293
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.72 E-value=0.0049 Score=55.59 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=24.4
Q ss_pred HhcccCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 87 ISTELKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 87 ~~~~~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...+.+..+.|+|++||||||+.+.|+.
T Consensus 163 lf~~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 163 LKEYLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred HHHHhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 33446789999999999999999999963
No 294
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.0051 Score=59.11 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.|.|+.-
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 47899999999999999999999853
No 295
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.68 E-value=0.0073 Score=52.54 Aligned_cols=27 Identities=26% Similarity=-0.064 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+|..++++|+||+||||.+-.++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999998888665
No 296
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.68 E-value=0.016 Score=52.70 Aligned_cols=28 Identities=11% Similarity=-0.008 Sum_probs=24.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHhCCc
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l~~~ 120 (281)
+..++|.|++|+|||++++.+|+.+...
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 4568999999999999999999998764
No 297
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.62 E-value=0.0074 Score=55.72 Aligned_cols=27 Identities=22% Similarity=0.076 Sum_probs=24.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+|..+.|+|++||||||+++.++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999999765
No 298
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.62 E-value=0.0037 Score=58.08 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+-
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3689999999999999999999984
No 299
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.61 E-value=0.0065 Score=60.04 Aligned_cols=28 Identities=29% Similarity=0.403 Sum_probs=25.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhCC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~~ 119 (281)
.+..++|+|++||||||+++.++..++.
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4678999999999999999999998754
No 300
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.58 E-value=0.013 Score=49.32 Aligned_cols=27 Identities=26% Similarity=0.087 Sum_probs=23.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+...|+|+|.+|+||||+...|+..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999775
No 301
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.57 E-value=0.017 Score=54.88 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=24.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
.++..|+|+|++||||||+.+.|...+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4677899999999999999999987664
No 302
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.57 E-value=0.0085 Score=51.08 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=20.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
++.++++|+||||||+++..+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 568899999999999999886533
No 303
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.56 E-value=0.008 Score=60.86 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 023493 95 SVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l 117 (281)
.++|+|+||+|||++|+.+|+.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999987
No 304
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.56 E-value=0.0076 Score=55.96 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
++-.|+|+|++||||||+.+.++..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45589999999999999999998654
No 305
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.51 E-value=0.013 Score=49.16 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
+...|+|+|.+|+||||+...|+..+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999998753
No 306
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=95.51 E-value=0.029 Score=50.66 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=20.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
..++.|+|+|| ||+|+.+.|-+.+.
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p 122 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYP 122 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhCh
Confidence 45678999987 59999999988764
No 307
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.47 E-value=0.0088 Score=54.94 Aligned_cols=27 Identities=19% Similarity=0.087 Sum_probs=24.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-++..+.|+|+|||||||+.+.|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 568899999999999999999998644
No 308
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.45 E-value=0.01 Score=54.89 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=28.6
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCceecCc
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSD 125 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l-----~~~~~d~D 125 (281)
+..+|..+.|.|+|||||||++..++... .+.|++++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34578999999999999999999988543 34566643
No 309
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.44 E-value=0.0077 Score=53.63 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l 117 (281)
.++.|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998654
No 310
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.44 E-value=0.0087 Score=48.65 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
++..|+|+|.+|+||||+.+.|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999753
No 311
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.44 E-value=0.0092 Score=54.54 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=27.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCch
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~ 126 (281)
++..|.|+|++|+||||++..||..+ | +.++|.|-
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46789999999999999999999655 3 34566664
No 312
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.43 E-value=0.013 Score=53.88 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.4
Q ss_pred cCCcEEEE--EccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFL--VGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l--~G~~GsGKstvak~La~~l 117 (281)
-.+..++| +|++|+||||+++.+++.+
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 35667888 9999999999999999766
No 313
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.40 E-value=0.0058 Score=56.04 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|..+.|+|++||||||+.+.|+..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999998654
No 314
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.39 E-value=0.0085 Score=48.13 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+|+|++|+||||+.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999974
No 315
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.37 E-value=0.0081 Score=57.34 Aligned_cols=35 Identities=26% Similarity=0.185 Sum_probs=27.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---CC--ceecCch
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS 126 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~~--~~~d~D~ 126 (281)
++..|+++|++||||||++..||..+ |. .++++|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 36789999999999999999999655 33 3466663
No 316
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.37 E-value=0.0098 Score=49.20 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~ 116 (281)
..|+|+|++||||||+.+.++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999999864
No 317
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.36 E-value=0.0096 Score=46.66 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
...|+++|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999998754
No 318
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.36 E-value=0.0086 Score=57.33 Aligned_cols=35 Identities=29% Similarity=0.242 Sum_probs=28.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---CC--ceecCchH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSL 127 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l---~~--~~~d~D~l 127 (281)
+..|+++|++|+||||++..||..+ |. .++++|..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 6789999999999999999999755 33 35677754
No 319
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.32 E-value=0.0053 Score=51.05 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=22.5
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHH
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La 114 (281)
+..++..|.|+|++|+||||+.+.|+
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 34567889999999999999999885
No 320
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.29 E-value=0.011 Score=46.57 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+...|+|+|.+|+||||+...|...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 3457999999999999999888753
No 321
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.26 E-value=0.013 Score=49.66 Aligned_cols=27 Identities=15% Similarity=-0.148 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|+.++++|++||||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 467899999999999999998888766
No 322
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.25 E-value=0.013 Score=53.70 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=30.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~li 128 (281)
..|.-|+|+|++|+||||++..|.++ |+.++.-|...
T Consensus 142 ~~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~ 178 (314)
T 1ko7_A 142 VYGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE 178 (314)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEE
Confidence 45889999999999999999999875 88888655543
No 323
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.25 E-value=0.011 Score=48.90 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~ 116 (281)
..|+|+|++|+||||+.+.|+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 324
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.24 E-value=0.015 Score=59.69 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=22.5
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l 117 (281)
..++|+|++|+|||++|+.|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 325
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.23 E-value=0.01 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
++...|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999975
No 326
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.22 E-value=0.0047 Score=56.33 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=25.0
Q ss_pred HHhcccCCcEEEEEccCCCCHHHHHHHHH
Q 023493 86 DISTELKGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 86 e~~~~~~~~~i~l~G~~GsGKstvak~La 114 (281)
++....+|..+.|+|++|+||||+.+.|+
T Consensus 166 ~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 166 DIIPHFQDKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp TTGGGGTTSEEEEEESHHHHHHHHHHHHC
T ss_pred HHHhhcCCCEEEEECCCCCCHHHHHHHhc
Confidence 34455789999999999999999999985
No 327
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.22 E-value=0.012 Score=46.26 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~ 116 (281)
+.|+++|.+|+||||+...|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999753
No 328
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.20 E-value=0.011 Score=57.86 Aligned_cols=26 Identities=35% Similarity=0.301 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+-.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999999853
No 329
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.19 E-value=0.021 Score=53.03 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=28.7
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCceecC
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDS 124 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l-----~~~~~d~ 124 (281)
..+|..+.|.|+||+||||+|..++... .+.|+|+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4678999999999999999999988543 3557776
No 330
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.16 E-value=0.011 Score=53.50 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=27.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCc
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD 125 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D 125 (281)
+..|.++|++|+||||++..||..+ | ..++|.|
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 6789999999999999999999665 3 4456776
No 331
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.15 E-value=0.012 Score=53.39 Aligned_cols=28 Identities=21% Similarity=0.026 Sum_probs=24.5
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
..+|..+.|.|+||+||||++..++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3568999999999999999999998653
No 332
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.14 E-value=0.013 Score=49.82 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.1
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHH
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La 114 (281)
..+|..++|.|.||+|||++|-.++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3578999999999999999998765
No 333
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.13 E-value=0.013 Score=52.76 Aligned_cols=34 Identities=26% Similarity=0.192 Sum_probs=26.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCc
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD 125 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D 125 (281)
++..|.++|++|+||||++..||..+ | +.++|.|
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 57889999999999999999999654 2 3345655
No 334
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.12 E-value=0.013 Score=54.47 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=28.8
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCc
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD 125 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D 125 (281)
+..+|..+.|.|+|||||||++..++..+ | +.|+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 34678999999999999999999998653 3 3466653
No 335
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.11 E-value=0.013 Score=46.09 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+...|+++|.+|+||||+...|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999998753
No 336
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.10 E-value=0.011 Score=58.03 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=24.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999998543
No 337
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.04 E-value=0.02 Score=52.86 Aligned_cols=35 Identities=11% Similarity=0.030 Sum_probs=30.3
Q ss_pred HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 84 ~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
...+.+..+|..+.|+|++||||||+.+.|+....
T Consensus 62 ld~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 62 IDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp HHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55566668899999999999999999999998764
No 338
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.03 E-value=0.013 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=22.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La 114 (281)
.+|..+.|+|+|||||||+++.|+
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHH
Confidence 568999999999999999999776
No 339
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.02 E-value=0.011 Score=58.17 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 478999999999999999999997543
No 340
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.01 E-value=0.015 Score=45.82 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+|+|.+|+||||+...|..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999999975
No 341
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.01 E-value=0.0058 Score=60.54 Aligned_cols=28 Identities=11% Similarity=0.336 Sum_probs=24.7
Q ss_pred EEEEEccCCCCHHHHHHHHHHHhCCcee
Q 023493 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l~~~~~ 122 (281)
.|+|+|+||+|||++|+.+|+.++...+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~ 356 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVY 356 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEEC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCcee
Confidence 7999999999999999999988875443
No 342
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.95 E-value=0.022 Score=56.18 Aligned_cols=27 Identities=26% Similarity=0.121 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+.+..++|+|+|||||||+.+.+...+
T Consensus 202 ~~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 202 AGHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp TTCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356889999999999999999988644
No 343
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.018 Score=46.92 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=22.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+...|+|+|.+|+||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999998754
No 344
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.93 E-value=0.015 Score=45.78 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+++|.+|+||||+...|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999999875
No 345
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.93 E-value=0.016 Score=53.35 Aligned_cols=34 Identities=18% Similarity=0.064 Sum_probs=27.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---CC--ceecCc
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSD 125 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~~--~~~d~D 125 (281)
+...|+|+|.||+||||+...|+..+ |. ..++.|
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 45789999999999999999999765 33 345555
No 346
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.91 E-value=0.014 Score=52.74 Aligned_cols=27 Identities=11% Similarity=-0.075 Sum_probs=23.9
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
..+|..+.|.|+||+|||+++..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999864
No 347
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.91 E-value=0.016 Score=53.35 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.+..|.|+|+||+||||+...|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 37889999999999999999998754
No 348
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.91 E-value=0.011 Score=57.42 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+|.+|+|+|++||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57789999999999999999998654
No 349
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.91 E-value=0.025 Score=53.97 Aligned_cols=35 Identities=20% Similarity=0.077 Sum_probs=30.3
Q ss_pred HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 84 ~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
...+.+..+|..+.|+|++||||||+.+.|+....
T Consensus 148 ld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 148 INALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp HHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 55566678899999999999999999999998664
No 350
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.88 E-value=0.013 Score=47.88 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
..|+|+|.+|+||||+.+.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999864
No 351
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.87 E-value=0.019 Score=45.92 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999864
No 352
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.81 E-value=0.021 Score=49.27 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=27.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh--C--CceecCc
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL--R--YYYFDSD 125 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l--~--~~~~d~D 125 (281)
.+...++++|.+|+||||++..|+..+ | ...+|.|
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 456788899999999999999999765 3 3346665
No 353
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.78 E-value=0.021 Score=47.68 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+...|+|+|++|+||||+...|....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998643
No 354
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.77 E-value=0.02 Score=45.27 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.9
Q ss_pred cEEEEEccCCCCHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La 114 (281)
..|+|+|.+|+||||+.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 579999999999999998874
No 355
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.76 E-value=0.013 Score=57.28 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.|.|+..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999999999753
No 356
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.73 E-value=0.015 Score=53.13 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=30.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhCCceecCchH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~~~~~d~D~l 127 (281)
..|.-|+|+|++|+||||+|-.|.+ .|+.++.-|..
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v 180 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAI 180 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEE
Confidence 5688899999999999999999876 58888875554
No 357
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.73 E-value=0.019 Score=52.57 Aligned_cols=27 Identities=15% Similarity=-0.012 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-++..|.|+|++|+||||+...|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998654
No 358
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.73 E-value=0.015 Score=56.98 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999999853
No 359
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.73 E-value=0.017 Score=55.94 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=21.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFL 113 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~L 113 (281)
.+|..+.|+|++||||||+++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 57999999999999999999994
No 360
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.73 E-value=0.012 Score=58.10 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 478999999999999999999997543
No 361
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.72 E-value=0.015 Score=45.83 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+|+|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999998864
No 362
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.72 E-value=0.018 Score=56.35 Aligned_cols=26 Identities=38% Similarity=0.377 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999999854
No 363
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.69 E-value=0.017 Score=45.62 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=20.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+++|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999864
No 364
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.018 Score=57.24 Aligned_cols=26 Identities=35% Similarity=0.268 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+-.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 47999999999999999999999853
No 365
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.68 E-value=0.021 Score=47.03 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=20.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
.+...|+++|.+|+||||+.+.+..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999975
No 366
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.65 E-value=0.017 Score=55.10 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.5
Q ss_pred cCCcE--EEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTS--VFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~--i~l~G~~GsGKstvak~La~ 115 (281)
-+|.. +.|+|++||||||+.+.|+.
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 35777 99999999999999999974
No 367
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.64 E-value=0.023 Score=45.02 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356799999999999999999864
No 368
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.63 E-value=0.016 Score=47.15 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.3
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
++...|+++|.+|+||||+...|...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 44568999999999999999999753
No 369
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.63 E-value=0.021 Score=45.49 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
..|+|+|.+|+||||+...|..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 5799999999999999998863
No 370
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.63 E-value=0.021 Score=45.29 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.9
Q ss_pred cEEEEEccCCCCHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La 114 (281)
..|+|+|.+|+||||+...|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999885
No 371
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.62 E-value=0.013 Score=57.77 Aligned_cols=27 Identities=30% Similarity=0.280 Sum_probs=23.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 468999999999999999999997543
No 372
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.60 E-value=0.026 Score=51.09 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=25.5
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+..+|..++|.|.||+||||++..+|...
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999998543
No 373
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.60 E-value=0.025 Score=46.97 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=23.0
Q ss_pred HHhcccCCcEEEEEccCCCCHHHHHHHHH
Q 023493 86 DISTELKGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 86 e~~~~~~~~~i~l~G~~GsGKstvak~La 114 (281)
.+.-..+...|+|+|.+|+||||+.+.|.
T Consensus 18 ~~~~~~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 18 FLGLYKKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp HHTCTTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred HhhccCCCcEEEEECCCCCCHHHHHHHHh
Confidence 34333456679999999999999999885
No 374
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.59 E-value=0.021 Score=50.23 Aligned_cols=24 Identities=33% Similarity=0.184 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999964
No 375
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.58 E-value=0.023 Score=44.86 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=20.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
...|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999998753
No 376
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=94.57 E-value=0.054 Score=48.89 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=21.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHhC
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l~ 118 (281)
..++.|+|+|| ||+|+.+.|.+.+.
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~ 127 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFP 127 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCc
Confidence 45788999998 79999999988653
No 377
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.53 E-value=0.026 Score=52.56 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=28.6
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh-----CCceecCc
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSD 125 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l-----~~~~~d~D 125 (281)
+..+|..+.|.|+||+||||++..++... .+.|+|++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34578999999999999999999888543 34566654
No 378
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.53 E-value=0.024 Score=44.76 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=19.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
..|+|+|.+|+||||+...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999874
No 379
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.52 E-value=0.024 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+|+|.+|+||||+...|..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999998865
No 380
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.52 E-value=0.023 Score=45.40 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+...|+|+|.+|+||||+...|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4467999999999999999998764
No 381
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.52 E-value=0.018 Score=57.27 Aligned_cols=26 Identities=38% Similarity=0.305 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+-.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCC
Confidence 47899999999999999999999743
No 382
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.51 E-value=0.024 Score=45.25 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=20.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+|+|.+|+||||+...|..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999864
No 383
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.51 E-value=0.024 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=20.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~ 116 (281)
..|+|+|.+|+||||+...|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999998753
No 384
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.50 E-value=0.026 Score=46.05 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999864
No 385
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.50 E-value=0.021 Score=56.70 Aligned_cols=26 Identities=38% Similarity=0.376 Sum_probs=23.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-+|..+.|+|++||||||+.+.|+..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999999853
No 386
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.43 E-value=0.028 Score=44.26 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.8
Q ss_pred EEEEEccCCCCHHHHHHHHHHH
Q 023493 95 SVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~ 116 (281)
.|+|+|.+|+||||+...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999754
No 387
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.42 E-value=0.012 Score=57.95 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 478999999999999999999987543
No 388
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.40 E-value=0.022 Score=52.18 Aligned_cols=26 Identities=19% Similarity=-0.031 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+|..+.|.|+|||||||++..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999875
No 389
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.39 E-value=0.027 Score=44.34 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+|+|.+|+||||+...|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999875
No 390
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.36 E-value=0.024 Score=45.28 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=19.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La 114 (281)
...|+|+|.+|+||||+...|.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3579999999999999998875
No 391
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.36 E-value=0.02 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
-..++|+|+.||||||+.+.|...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 357889999999999999999853
No 392
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.36 E-value=0.027 Score=45.42 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=20.2
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
..|+|+|.+|+||||+...|..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 393
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.33 E-value=0.027 Score=45.60 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
....|+|+|.+|+||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999998643
No 394
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.31 E-value=0.026 Score=45.75 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l 117 (281)
...|+|+|.+|+||||+.+.|...+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3579999999999999998886543
No 395
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.30 E-value=0.029 Score=45.44 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
...|+|+|.+|+||||+...|...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999764
No 396
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.29 E-value=0.025 Score=45.36 Aligned_cols=26 Identities=23% Similarity=0.150 Sum_probs=21.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+...|+|+|.+|+||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Confidence 34567999999999999999998753
No 397
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.27 E-value=0.029 Score=45.18 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.4
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~ 116 (281)
..|+|+|.+|+||||+...|...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999753
No 398
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.27 E-value=0.03 Score=44.62 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
...|+|+|.+|+||||+...|...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999754
No 399
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.27 E-value=0.028 Score=44.95 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 345799999999999999998874
No 400
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.22 E-value=0.03 Score=53.19 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=24.5
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+..+|..++|.|.||+||||++..++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999998853
No 401
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.22 E-value=0.028 Score=45.44 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.6
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
..|+|+|.+|+||||+...|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999874
No 402
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.22 E-value=0.016 Score=57.18 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|+.-+
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999999997543
No 403
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.21 E-value=0.03 Score=54.30 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=25.0
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+..+|..+.|+|++||||||+++.++..+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33679999999999999999999998543
No 404
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.21 E-value=0.029 Score=44.70 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
++...|+|+|.+|+||||+...|..
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHc
Confidence 3446799999999999999999874
No 405
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.19 E-value=0.021 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.4
Q ss_pred CCcEEEEEccCCCCHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La 114 (281)
+...|+|+|.+|+||||+...|.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 46789999999999999998774
No 406
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.19 E-value=0.028 Score=53.46 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh
Q 023493 95 SVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l 117 (281)
.++|.|++||||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999766
No 407
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.18 E-value=0.031 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
...|+|+|.+|+||||+...|...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999763
No 408
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.16 E-value=0.027 Score=55.91 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+|..+.|+|++||||||+.+.|+-.
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTS
T ss_pred cceEEEEECCCCCcHHHHHHHHhcC
Confidence 4688999999999999999999853
No 409
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.13 E-value=0.032 Score=44.99 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=20.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
..|+|+|.+|+||||+...|..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999875
No 410
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.09 E-value=0.031 Score=53.15 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=27.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh---C--CceecCch
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~ 126 (281)
++..|.++|++|+||||++..||..+ | +.++|.|.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 46789999999999999999999765 2 34456653
No 411
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.06 E-value=0.034 Score=45.41 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+|+|.+|+||||+...|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 35799999999999999999875
No 412
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.06 E-value=0.043 Score=52.88 Aligned_cols=33 Identities=24% Similarity=0.139 Sum_probs=29.3
Q ss_pred HHHHhcccCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 84 ~~e~~~~~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+..+.+..+|..+.|.|++|+||||++..|+..
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 566778899999999999999999999988754
No 413
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.035 Score=44.44 Aligned_cols=24 Identities=33% Similarity=0.241 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
...|+|+|.+|+||||+...|...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999998753
No 414
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.04 E-value=0.032 Score=44.92 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=22.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+...|+|+|.+|+||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44568999999999999999998753
No 415
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.04 E-value=0.031 Score=47.92 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 456899999999999999999863
No 416
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.01 E-value=0.033 Score=45.09 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+++|.+|+||||+...|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999998864
No 417
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.00 E-value=0.042 Score=44.03 Aligned_cols=25 Identities=20% Similarity=-0.019 Sum_probs=21.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+...|+|+|.+|+||||+...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999988753
No 418
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.00 E-value=0.036 Score=44.51 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=20.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999998874
No 419
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.99 E-value=0.032 Score=45.40 Aligned_cols=24 Identities=42% Similarity=0.517 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998864
No 420
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.97 E-value=0.039 Score=47.74 Aligned_cols=27 Identities=11% Similarity=-0.166 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|+..+++|++||||||.+-.++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999998888655
No 421
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.96 E-value=0.036 Score=44.34 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=20.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+|+|.+|+||||+...|..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999998864
No 422
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.94 E-value=0.032 Score=54.21 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=26.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---CC--ceecCch
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS 126 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l---~~--~~~d~D~ 126 (281)
+..|.|+|.+|+||||++..||..+ |. .+++.|.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 4589999999999999999999655 43 3466653
No 423
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.93 E-value=0.035 Score=45.57 Aligned_cols=26 Identities=23% Similarity=0.150 Sum_probs=22.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+...|+|+|.+|+||||+...|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 44568999999999999999998753
No 424
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.92 E-value=0.039 Score=45.27 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+...|+|+|.+|+||||+...|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999998753
No 425
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.91 E-value=0.039 Score=44.96 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 356899999999999999999975
No 426
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.89 E-value=0.033 Score=52.79 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=21.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
.+..+.|+|++||||||+.+.|+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 455899999999999999999985
No 427
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.89 E-value=0.04 Score=44.35 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+...+|+|+.||||||+..++.=.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4467899999999999999886544
No 428
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.88 E-value=0.039 Score=48.19 Aligned_cols=33 Identities=21% Similarity=-0.095 Sum_probs=25.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh---CCc--eecCch
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS 126 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l---~~~--~~d~D~ 126 (281)
.+|++.|++|+||||++-.+|..+ |+. ++|.|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 458899999999999988888544 544 557763
No 429
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.88 E-value=0.04 Score=45.01 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
...|+|+|.+|+||||+...|...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 357999999999999999999864
No 430
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.83 E-value=0.039 Score=44.88 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.8
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+...|+|+|.+|+||||+...|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999874
No 431
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.83 E-value=0.037 Score=44.46 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=20.3
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+|+|.+|+||||+...|..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45799999999999999998874
No 432
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.81 E-value=0.038 Score=45.27 Aligned_cols=25 Identities=20% Similarity=-0.036 Sum_probs=21.7
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
.+...|+|+|.+|+||||+...+..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 5567899999999999999987765
No 433
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.77 E-value=0.035 Score=45.82 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHHh
Confidence 456799999999999999999875
No 434
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.77 E-value=0.041 Score=44.71 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=20.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
..|+|+|.+|+||||+...|..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 5799999999999999999875
No 435
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.74 E-value=0.042 Score=45.30 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999875
No 436
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.73 E-value=0.042 Score=45.19 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
...|+|+|.+|+||||+...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999998753
No 437
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.72 E-value=0.043 Score=45.60 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=20.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+...|+|+|.+|+||||+...|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999754
No 438
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.72 E-value=0.043 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=19.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
..|+|+|.+|+||||+...|..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999875
No 439
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.69 E-value=0.037 Score=44.79 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=20.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
.+...|+|+|.+|+||||+...|..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999864
No 440
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.69 E-value=0.037 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.088 Sum_probs=21.8
Q ss_pred cEEEEEccCCCCHHHHHHHHHHHh
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~l 117 (281)
..+.|+|++||||||+.+.|+--+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 788999999999999999998654
No 441
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.043 Score=44.97 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.0
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
...|+|+|.+|+||||+...|...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999998753
No 442
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.68 E-value=0.04 Score=45.40 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.6
Q ss_pred CCcEEEEEccCCCCHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La 114 (281)
+...|+|+|.+|+||||+...|.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999884
No 443
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.65 E-value=0.042 Score=52.28 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=26.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh----CC--ceecCch
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL----RY--YYFDSDS 126 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l----~~--~~~d~D~ 126 (281)
+..|.++|++|+||||++-.||..+ |. ..+|+|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4688999999999999999999554 43 4567774
No 444
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.63 E-value=0.038 Score=57.80 Aligned_cols=25 Identities=20% Similarity=0.192 Sum_probs=23.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+|..+.|+|++||||||+.+.|+.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999999984
No 445
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.63 E-value=0.041 Score=47.62 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
.+...|+|+|.+|+||||+...|..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 3557899999999999999999864
No 446
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.62 E-value=0.046 Score=44.32 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+...|+|+|.+|+||||+...|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999998753
No 447
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.61 E-value=0.042 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
..|+|+|.+|+||||+...|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999998864
No 448
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.59 E-value=0.046 Score=44.60 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+|+|.+|+||||+...|..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999975
No 449
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.59 E-value=0.046 Score=44.48 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 446899999999999999999875
No 450
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.57 E-value=0.047 Score=44.69 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=21.5
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+...|+|+|.+|+||||+...|...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 34567999999999999999988753
No 451
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.56 E-value=0.066 Score=50.63 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=29.0
Q ss_pred HHHHH-hcccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 83 KAADI-STELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 83 ~~~e~-~~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
|+.++ .+..+|..+.|+|++|+||||+++.|+...
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 54444 466889999999999999999999998754
No 452
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.55 E-value=0.052 Score=51.45 Aligned_cols=28 Identities=18% Similarity=0.046 Sum_probs=24.4
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+..+|..++|.|.||+||||++..+|..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999988853
No 453
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.54 E-value=0.034 Score=44.57 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+...|+|+|.+|+||||+...+...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999763
No 454
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.51 E-value=0.048 Score=44.52 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=20.0
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
..|+|+|.+|+||||+...|..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 5799999999999999999875
No 455
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.51 E-value=0.048 Score=44.55 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=22.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
.+...|+|+|.+|+||||+...+...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 34568999999999999999998753
No 456
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.49 E-value=0.041 Score=54.47 Aligned_cols=27 Identities=26% Similarity=0.085 Sum_probs=22.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+.+..++++|+|||||||+...+...+
T Consensus 162 l~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 162 LTRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp HTBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999999999888776543
No 457
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.48 E-value=0.049 Score=44.95 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
....|+|+|.+|+||||+...|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999874
No 458
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.44 E-value=0.047 Score=44.79 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=20.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
.+...|+|+|.+|+||||+...|..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3467899999999999999998863
No 459
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.44 E-value=0.039 Score=45.00 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.6
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La 114 (281)
.....|+|+|.+|+||||+...|.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 456789999999999999999875
No 460
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.44 E-value=0.05 Score=45.25 Aligned_cols=25 Identities=20% Similarity=0.021 Sum_probs=21.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
.+...|+|+|.+|+||||+...+..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 4567899999999999999988875
No 461
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.44 E-value=0.049 Score=44.94 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
..|+|+|.+|+||||+...|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999865
No 462
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.44 E-value=0.049 Score=45.60 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.2
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
...|+|+|.+|+||||+...|...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999763
No 463
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.43 E-value=0.04 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=18.9
Q ss_pred cEEEEEccCCCCHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La 114 (281)
..|+|+|++|+||||+.+.|.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 457999999999999999975
No 464
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.36 E-value=0.051 Score=45.39 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=20.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
...|+|+|.+|+||||+...|...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999998753
No 465
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.34 E-value=0.053 Score=50.21 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=23.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
..+.+++|+|++||||||+.+.+...+
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998643
No 466
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.34 E-value=0.039 Score=45.73 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La 114 (281)
...|+|+|.+|+||||+.+.|.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999874
No 467
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=93.32 E-value=0.28 Score=49.47 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.0
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
..++.|+|+|| ||+|+.+.|.+.+
T Consensus 529 ~~~r~vvl~GP---~K~tl~~~L~~~~ 552 (721)
T 2xkx_A 529 HYARPIIILGP---TKDRANDDLLSEF 552 (721)
T ss_pred CCCCEEEEECC---CHHHHHHHHHHhC
Confidence 35688999998 3999999998765
No 468
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.31 E-value=0.063 Score=49.48 Aligned_cols=28 Identities=21% Similarity=0.005 Sum_probs=25.1
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHH
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~ 116 (281)
+..+|..++|.|.||+||||++..+|..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999999865
No 469
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.28 E-value=0.04 Score=44.89 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.5
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999988854
No 470
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.27 E-value=0.051 Score=44.93 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=19.8
Q ss_pred CcEEEEEccCCCCHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La 114 (281)
...|+|+|.+|+||||+.+.|.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 4579999999999999999885
No 471
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.26 E-value=0.054 Score=44.96 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+|+|.+|+||||+...|..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 45799999999999999999875
No 472
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.25 E-value=0.087 Score=48.36 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=24.6
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHHh---CC--ceecCch
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS 126 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~l---~~--~~~d~D~ 126 (281)
...+++.|..|+||||++..||..+ |. -.+|+|-
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3445556899999999999998654 44 4567764
No 473
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.25 E-value=0.047 Score=52.99 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
....|.|+|++|+||||+++.++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 467899999999999999999863
No 474
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.22 E-value=0.05 Score=44.61 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La 114 (281)
...|+|+|.+|+||||+...|.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3569999999999999999885
No 475
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.20 E-value=0.051 Score=45.98 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999998853
No 476
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.18 E-value=0.056 Score=50.81 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=22.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-++..|.|+|+||+||||+-+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4578999999999999999999986
No 477
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.15 E-value=0.049 Score=52.94 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.8
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
....|.|+|+.|.||||+|+.++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999995
No 478
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.14 E-value=0.032 Score=44.96 Aligned_cols=22 Identities=18% Similarity=0.159 Sum_probs=10.1
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
..|+|+|.+|+||||+...|..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999988763
No 479
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.12 E-value=0.059 Score=44.50 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.9
Q ss_pred CcEEEEEccCCCCHHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~~ 116 (281)
...|+|+|.+|+||||+...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999998753
No 480
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.10 E-value=0.043 Score=44.61 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.2
Q ss_pred CCcEEEEEccCCCCHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La 114 (281)
+...|+++|.+|+||||+...|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999998873
No 481
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.03 E-value=0.063 Score=43.76 Aligned_cols=23 Identities=26% Similarity=0.111 Sum_probs=20.7
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~ 116 (281)
..|+|+|.+|+||||+...|...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999764
No 482
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.03 E-value=0.042 Score=54.42 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=22.3
Q ss_pred ccCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 90 ELKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 90 ~~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
.+.-..|.|+|++||||||+.+.|+.
T Consensus 42 ~l~lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 42 DLALPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp SCCCCCEECCCCTTSCHHHHHHHHHS
T ss_pred cccCCeEEEECCCCChHHHHHHHHhC
Confidence 35556699999999999999999974
No 483
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.02 E-value=0.059 Score=44.87 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
..|+|+|.+|+||||+...|..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 5799999999999999998864
No 484
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.01 E-value=0.057 Score=46.91 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.9
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 457899999999999999998853
No 485
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.99 E-value=0.061 Score=44.39 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.3
Q ss_pred cEEEEEccCCCCHHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLADA 116 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~~ 116 (281)
..|+|+|.+|+||||+...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998753
No 486
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.98 E-value=0.059 Score=47.26 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=19.9
Q ss_pred cEEEEEccCCCCHHHHHHHHHH
Q 023493 94 TSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 94 ~~i~l~G~~GsGKstvak~La~ 115 (281)
+.|+|+|.+||||||+...|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4789999999999999999964
No 487
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.98 E-value=0.065 Score=47.69 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=27.2
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh---CC--ceecCc
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSD 125 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l---~~--~~~d~D 125 (281)
-+++.|.++|..|+||||++-.||..| |. ..+|+|
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 457788888999999999999888654 43 457776
No 488
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.97 E-value=0.059 Score=45.11 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456899999999999999999863
No 489
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.96 E-value=0.064 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.080 Sum_probs=20.4
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+|+|.+|+||||+...|..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 35799999999999999999864
No 490
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.90 E-value=0.082 Score=52.35 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
.....+|.|+||||||++...+...+
T Consensus 194 ~~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 194 QRPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 35678899999999999887776543
No 491
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.81 E-value=0.036 Score=55.33 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFL 113 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~L 113 (281)
-+|..+.|+|++||||||+.+.+
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHTTT
T ss_pred cCCCEEEEEeeCCCCHHHHHHHH
Confidence 46899999999999999999754
No 492
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.80 E-value=0.077 Score=50.53 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=25.1
Q ss_pred cccCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 89 ~~~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
+..+|..++|.|.||+||||++-.+|...
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 55679999999999999999999888543
No 493
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.79 E-value=0.07 Score=44.19 Aligned_cols=23 Identities=17% Similarity=-0.044 Sum_probs=20.5
Q ss_pred CcEEEEEccCCCCHHHHHHHHHH
Q 023493 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 93 ~~~i~l~G~~GsGKstvak~La~ 115 (281)
...|+|+|.+|+||||+...|..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999875
No 494
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.78 E-value=0.069 Score=47.17 Aligned_cols=24 Identities=33% Similarity=0.256 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCCHHHHHHHHHH
Q 023493 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 92 ~~~~i~l~G~~GsGKstvak~La~ 115 (281)
+...|+|+|.+|+||||+...|..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999964
No 495
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.77 E-value=0.047 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.065 Sum_probs=21.4
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
.++..|.|+|.||+||||+...|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 3455799999999999999999964
No 496
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.75 E-value=0.078 Score=48.05 Aligned_cols=41 Identities=27% Similarity=0.207 Sum_probs=28.4
Q ss_pred HHhcccCC--cEEEEEccCCCCHHHHHHHHHHHh---C--CceecCch
Q 023493 86 DISTELKG--TSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (281)
Q Consensus 86 e~~~~~~~--~~i~l~G~~GsGKstvak~La~~l---~--~~~~d~D~ 126 (281)
++....+| ..+++.|..|+||||++..||..+ | .-.+|+|-
T Consensus 5 ~~l~~~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 5 DLFKFNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp GGCCCBTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred HhhcCCCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 33444455 456666899999999999998544 4 34577774
No 497
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.75 E-value=0.07 Score=43.86 Aligned_cols=25 Identities=16% Similarity=0.285 Sum_probs=20.1
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHH
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~ 115 (281)
-+...|+|+|.+|+||||+.+.+..
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3467899999999999999887654
No 498
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.73 E-value=0.056 Score=58.27 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCCHHHHHHHHHHHh
Q 023493 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (281)
Q Consensus 91 ~~~~~i~l~G~~GsGKstvak~La~~l 117 (281)
-+|..+.|+|++||||||+.+.|...+
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 479999999999999999999996544
No 499
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.72 E-value=0.049 Score=46.21 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=25.3
Q ss_pred EEEEEccCCCCHHHHHHHHHHHh---CC--ceecCch
Q 023493 95 SVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS 126 (281)
Q Consensus 95 ~i~l~G~~GsGKstvak~La~~l---~~--~~~d~D~ 126 (281)
.|.|.|..|+||||++..||..| |. -.+|.|.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46779999999999999999776 33 3567764
No 500
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.65 E-value=0.14 Score=45.92 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=27.8
Q ss_pred cCCcEEEEEcc-CCCCHHHHHHHHHHHh---C--CceecCch
Q 023493 91 LKGTSVFLVGM-NNAIKTHLGKFLADAL---R--YYYFDSDS 126 (281)
Q Consensus 91 ~~~~~i~l~G~-~GsGKstvak~La~~l---~--~~~~d~D~ 126 (281)
-+++.|+|+|. +|+||||++..||..+ | +.++|+|.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 45678889885 8999999999998655 4 44678775
Done!