BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023494
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|B Chain B, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|C Chain C, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
Length = 230
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/230 (90%), Positives = 222/230 (96%)
Query: 48 ARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVV 107
+RVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVV
Sbjct: 1 SRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVV 60
Query: 108 DALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK 167
D+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAK
Sbjct: 61 DSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAK 120
Query: 168 AGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227
AGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVKKISDLR++C E+G+NP
Sbjct: 121 AGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNP 180
Query: 228 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277
WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIKTSKRP+
Sbjct: 181 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRPE 230
>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|B Chain B, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|C Chain C, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|D Chain D, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|E Chain E, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|F Chain F, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
Length = 230
Score = 321 bits (823), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 151/221 (68%), Positives = 187/221 (84%)
Query: 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 116
+I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T
Sbjct: 4 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKK 63
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP+T
Sbjct: 64 TLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPST 123
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
L +E VL V DL+LIMSVNPGFGGQSFI + KI LR+MC E+G++PWIEVDGG+
Sbjct: 124 PLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK 183
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277
P N ++V+EAGANA+VAGSAVF A +YAEAI G++ SKRP+
Sbjct: 184 PNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPE 224
>pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|B Chain B, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|C Chain C, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|D Chain D, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|E Chain E, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|F Chain F, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|G Chain G, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|H Chain H, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|I Chain I, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|J Chain J, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|K Chain K, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|L Chain L, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
Length = 220
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 149/218 (68%), Gaps = 2/218 (0%)
Query: 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD 115
S + ++PSIL+A++A ++ +E +++H+D+MDG+FVPNI+ G VV ++R +
Sbjct: 2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSK 61
Query: 116 LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 175
L D HLM+V+PE+ V F +AGADI+++H E ST H+H L +IK G KAGVV+NP
Sbjct: 62 LVFDCHLMVVDPERYVEAFAQAGADIMTIHTE--STRHIHGALQKIKAAGMKAGVVINPG 119
Query: 176 TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
T +A+E +LD+VD VLIM+VNPGFGGQ+FI ++K++ + + EKG++ IEVDGGV
Sbjct: 120 TPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGV 179
Query: 236 GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
K EAGAN VAGS +F A D ++ ++T+
Sbjct: 180 DNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTA 217
>pdb|3INP|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of
D-Ribulose-Phosphate 3- Epimerase From Francisella
Tularensis
Length = 246
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 132/215 (61%), Gaps = 3/215 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDL 116
I ++PSILSA+ A+LG+ VKAV AG D IH DVMD +VPN+T GP+V+ ALR
Sbjct: 28 IQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITA 87
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
+DVHLM+ + + F KAGA + H E S H+ R+L IK G +AG+ LNPAT
Sbjct: 88 GMDVHLMVKPVDALIESFAKAGATSIVFHPEASE--HIDRSLQLIKSFGIQAGLALNPAT 145
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
+ ++ V +D VLIMSVNPGFGGQ FI + + K ++ + + +E+DGGV
Sbjct: 146 GIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN 205
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
P N ++ G NA VAGSA+F + Y + I ++
Sbjct: 206 PYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMR 240
>pdb|1H1Y|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Y|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Z|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
pdb|1H1Z|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
Length = 228
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 126/217 (58%), Gaps = 8/217 (3%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
++PS+LS++FA L + + G DW+H+D+MDG FVPN+TIG V+ +LR T LD
Sbjct: 9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLD 68
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
HLM+ P V KAGA + H E S + + IK G + GV L P T +
Sbjct: 69 CHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD-NWQELIQSIKAKGMRPGVSLRPGTPVE 127
Query: 180 AIECVLDV---VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
+ +++ V+LVL+M+V PGFGGQ F+ ++K+ LR+ K + IEVDGG+G
Sbjct: 128 EVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRK----KYPSLDIEVDGGLG 183
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
P AGAN +VAGS++FGA + E I ++ S
Sbjct: 184 PSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKS 220
>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe
pdb|3OVP|B Chain B, Crystal Structure Of Hrpe
pdb|3OVQ|A Chain A, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVQ|B Chain B, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVR|A Chain A, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
pdb|3OVR|B Chain B, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
Length = 228
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 123/205 (60%), Gaps = 8/205 (3%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLP 117
+ PSIL+++ A LG + + +G D++H+DVMDG FVPNIT G VV++LR D
Sbjct: 7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPF 66
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
D+H+M+ +PEQ V AGA+ + H E +T + + I++ G K G+ + P TS
Sbjct: 67 FDMHMMVSKPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIKPGTS 124
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+ + + +D+ L+M+V PGFGGQ F+E + K+ LR IEVDGGVGP
Sbjct: 125 VEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLD----IEVDGGVGP 180
Query: 238 KNAYKVIEAGANALVAGSAVFGAKD 262
+K EAGAN +V+GSA+ ++D
Sbjct: 181 DTVHKCAEAGANMIVSGSAIMRSED 205
>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CTL|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
Length = 231
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 122/208 (58%), Gaps = 4/208 (1%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
+SPS++ + K EQ++ ++ + D+ H+D+MDG FVPN+T+ P V ++ + PLD
Sbjct: 3 ISPSLMCMDLLKFKEQIEFID-SHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLD 61
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
HLM+ P+ + +AGAD +++H E + R +++I+ K G++LNP T +
Sbjct: 62 CHLMVTRPQDYIAQLARAGADFITLHPETING-QAFRLIDEIRRHDMKVGLILNPETPVE 120
Query: 180 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
A++ + D + +M+V+PGF GQ FI + K+++L+ +G+ IEVDG
Sbjct: 121 AMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQAT 180
Query: 240 AYKVIEAGANALVAGSAVFGAKDYAEAI 267
K++ AGA+ + G++ G ++AE I
Sbjct: 181 YEKLMAAGADVFIVGTS--GLFNHAENI 206
>pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
pdb|1TQX|B Chain B, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
Length = 227
Score = 140 bits (353), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLP 117
I++PS+L++N +KL E+ + +E G +WIH+DVMD FVPN++ GP V++ L+ T +
Sbjct: 7 IIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIF 66
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCE--QSSTIHLHRTLNQIKDLGAKAGVVLNPA 175
DVHLM+ PE+ VP + ++ ++ H E T + +I+D G+ + P
Sbjct: 67 FDVHLMVEYPEKYVP--LLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPK 124
Query: 176 TSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233
T + + +LD +++ VL+M+V PGFGGQSF+ + K+S LR+ K N I+VDG
Sbjct: 125 TDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRK----KYKNLNIQVDG 180
Query: 234 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
G+ + GAN +VAG+++F A+D I ++ S
Sbjct: 181 GLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVS 220
>pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
pdb|3QC3|B Chain B, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
Length = 225
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 114/205 (55%), Gaps = 8/205 (3%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLP 117
+ PSIL+++ A LG + +G D++H+DV DG FVPNIT G VV++LR D
Sbjct: 8 IGPSILNSDLANLGAECLRXLDSGADYLHLDVXDGHFVPNITFGHPVVESLRKQLGQDPF 67
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
D H + +PEQ V AGA+ + H E +T + + I++ G K G+ + P TS
Sbjct: 68 FDXHXXVSKPEQWVKPXAVAGANQYTFHLE--ATENPGALIKDIRENGXKVGLAIKPGTS 125
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+ + + +D L+ +V PGFGGQ F E K+ LR IEVDGGVGP
Sbjct: 126 VEYLAPWANQIDXALVXTVEPGFGGQKFXEDXXPKVHWLRTQFPSLD----IEVDGGVGP 181
Query: 238 KNAYKVIEAGANALVAGSAVFGAKD 262
+K EAGAN +V+GSA+ ++D
Sbjct: 182 DTVHKCAEAGANXIVSGSAIXRSED 206
>pdb|3CU2|A Chain A, Crystal Structure Of Ribulose-5-phosphate 3-epimerase
(yp_718263.1) From Haemophilus Somnus 129pt At 1.91 A
Resolution
pdb|3CU2|B Chain B, Crystal Structure Of Ribulose-5-phosphate 3-epimerase
(yp_718263.1) From Haemophilus Somnus 129pt At 1.91 A
Resolution
Length = 237
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 13/212 (6%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
+S ILSAN+ +L E+V + + +H D+ DG+F T+G + + T D
Sbjct: 16 LSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIKYFP--THCFKD 73
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHL-------HRTLNQIKDLGAKAGVVL 172
VHL + + + GA++V++ EQ L +T + G L
Sbjct: 74 VHLXVRNQLEVAKAVVANGANLVTLQLEQYHDFALTIEWLAKQKTTYANQVYPVLIGACL 133
Query: 173 NPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232
P T +S +E LD +D++ +++++P G + E + ++ + + + V I +D
Sbjct: 134 CPETPISELEPYLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINID 193
Query: 233 GGVGPKNAYKVIEAGANA---LVAGSAVFGAK 261
G + A K + G + LV+GSA+F +
Sbjct: 194 GSXTLELA-KYFKQGTHQIDWLVSGSALFSGE 224
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 147 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 206
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 60 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 114
Query: 207 ESQVKKISDLRRMCLEKGV 225
E R C E+G+
Sbjct: 115 EQ-------FARRCAEEGI 126
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 147 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 206
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 37 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 91
Query: 207 ESQVKKISDLRRMCLEKGV 225
E R C E+G+
Sbjct: 92 EQ-------FARRCAEEGI 103
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 147 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 206
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 37 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 91
Query: 207 ESQVKKISDLRRMCLEKGV 225
E R C E+G+
Sbjct: 92 EQ-------FARRCAEEGI 103
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 147 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 206
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 60 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 114
Query: 207 ESQVKKISDLRRMCLEKGV 225
E R C E+G+
Sbjct: 115 EQ-------FARRCAEEGI 126
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 147 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 206
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 60 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 114
Query: 207 ESQVKKISDLRRMCLEKGV 225
E R C E+G+
Sbjct: 115 EQ-------FARRCAEEGI 126
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 147 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 206
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 60 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 114
Query: 207 ESQVKKISDLRRMCLEKGV 225
E R C E+G+
Sbjct: 115 EQ-------FARRCAEEGI 126
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 147 EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 206
E S++H ++ D G L PA S IE ++DV + +++PG+G S
Sbjct: 37 EDKSSLHRYKA-----DESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN 91
Query: 207 ESQVKKISDLRRMCLEKGV 225
E R C E+G+
Sbjct: 92 EQ-------FARRCAEEGI 103
>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV 188
+RV + +KA DI+ + S+ H R + IK + K + A ++ E LD++
Sbjct: 156 ERVEELVKAHVDILVI---DSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLI 212
Query: 189 DL---VLIMSVNPGFGGQSFIES-----QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKN 239
+ L + + PG + I + Q+ I D+ C N I DGG+ +
Sbjct: 213 SVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEAC--NNTNICIIADGGIRFSGD 270
Query: 240 AYKVIEAGANALVAGSAVFGAKD 262
K I AGA++++ G+ G K+
Sbjct: 271 VVKAIAAGADSVMIGNLFAGTKE 293
>pdb|1TYG|A Chain A, Structure Of The Thiazole SynthaseTHIS COMPLEX
pdb|1TYG|C Chain C, Structure Of The Thiazole SynthaseTHIS COMPLEX
Length = 253
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 221 LEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
+E+ P I VD G+G PK+A +E GA+ ++ +AV GA D + + +K
Sbjct: 172 IEQAKVPVI-VDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMK 222
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK----DLGAKAGVVLNPATSLSAI 181
E +RV +KAG D++ + + + TL IK DL AG V P + + I
Sbjct: 237 ETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALI 296
Query: 182 ECVLDVVDLVLIMSVNPG 199
+ D V + V PG
Sbjct: 297 KAGADAVKV----GVGPG 310
>pdb|1YTD|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Native Structure
pdb|1YTE|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum,
Phosphoribosylpyrophosphate Bound Structure
pdb|1YTK|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
With Nicotinate Mononucleotide
pdb|2I1O|A Chain A, Crystal Structure Of A Nicotinate
Phosphoribosyltransferase From Thermoplasma Acidophilum
Length = 398
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277
I V GG+ K+ EAGA A G+++ AK + A+ ++ + +P+
Sbjct: 273 IMVSGGLDENTVKKLREAGAEAFGVGTSISSAKPFDFAMDIVEVNGKPE 321
>pdb|1XI3|A Chain A, Thiamine Phosphate Pyrophosphorylase From Pyrococcus
Furiosus Pfu-1255191-001
pdb|1XI3|B Chain B, Thiamine Phosphate Pyrophosphorylase From Pyrococcus
Furiosus Pfu-1255191-001
Length = 215
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
GG+ NA +V++ G + + SAV GA+D +A + ++
Sbjct: 169 GGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELR 207
>pdb|1XM3|A Chain A, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|B Chain B, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|C Chain C, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|D Chain D, Crystal Structure Of Northeast Structural Genomics Target
Sr156
Length = 264
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 221 LEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
+E+ P I VD G+G PK+A E GA+ ++ +AV GA D + + K
Sbjct: 174 IEQAKVPVI-VDAGIGSPKDAAYAXELGADGVLLNTAVSGADDPVKXARAXK 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,866,029
Number of Sequences: 62578
Number of extensions: 313296
Number of successful extensions: 898
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 34
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)