BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023494
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea
GN=RPE PE=1 SV=1
Length = 285
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 245/285 (85%), Positives = 262/285 (91%), Gaps = 4/285 (1%)
Query: 1 MSTGSLCSST--TQINGFTGGFMLQK--TNLNQPSSLSFTRRRIQTIVKASARVDKFSKS 56
MS SLC ST +QINGF GG ++K + + P+SL+FTRR++QT+VKA++RVDKFSKS
Sbjct: 1 MSAASLCQSTLQSQINGFCGGLNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKS 60
Query: 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 116
DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL
Sbjct: 61 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 120
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
PLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRT+NQIK LGAKAGVVLNP T
Sbjct: 121 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGT 180
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
LS IE VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR+MC+EKGVNPWIEVDGGV
Sbjct: 181 PLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCVEKGVNPWIEVDGGVT 240
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRP+ VAV
Sbjct: 241 PANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPEPVAV 285
>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum
tuberosum PE=1 SV=1
Length = 280
Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/280 (85%), Positives = 260/280 (92%), Gaps = 3/280 (1%)
Query: 5 SLCSST---TQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVS 61
SL SST +QI+GF G LQK + + P+SL+FTRRRIQT+V AS+RVDKFSKSDIIVS
Sbjct: 1 SLGSSTLLQSQISGFGGSQKLQKISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVS 60
Query: 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 121
PSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVVD+LRP+TDLPLDVH
Sbjct: 61 PSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVH 120
Query: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
LMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNP T L+AI
Sbjct: 121 LMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAI 180
Query: 182 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241
E VLD VDLVLIMSVNPGFGGQSFIESQVKKISDLR++C E+G+NPWIEVDGGVGPKNAY
Sbjct: 181 EYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAY 240
Query: 242 KVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
KVIEAGANALVAGSAVFGA DYAEAIKGIKTSKRP+AVAV
Sbjct: 241 KVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRPEAVAV 280
>sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa
subsp. japonica GN=RPE PE=1 SV=2
Length = 274
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/247 (88%), Positives = 235/247 (95%)
Query: 33 LSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVM 92
L+F+ R V+AS+RVDKFSK+DIIVSPSILSANF+KLGEQVKAVE+AGCDWIHVDVM
Sbjct: 26 LAFSSPRKAFRVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVM 85
Query: 93 DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 152
DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI
Sbjct: 86 DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 145
Query: 153 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 212
HLHRT+NQIK LGAKAGVVLNPAT L+AI+ VLDVVDLVLIMSVNPGFGGQSFIESQVKK
Sbjct: 146 HLHRTVNQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVKK 205
Query: 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272
I++LRR+C EKGVNPWIEVDGGVGPKNAYKVIEAGANA+VAGSAVFGA DYAEAIKGIKT
Sbjct: 206 IAELRRLCAEKGVNPWIEVDGGVGPKNAYKVIEAGANAIVAGSAVFGAPDYAEAIKGIKT 265
Query: 273 SKRPQAV 279
S++P AV
Sbjct: 266 SQKPVAV 272
>sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rpe PE=1 SV=3
Length = 230
Score = 321 bits (823), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 151/221 (68%), Positives = 187/221 (84%)
Query: 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 116
+I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T
Sbjct: 4 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKK 63
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP+T
Sbjct: 64 TLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPST 123
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
L +E VL V DL+LIMSVNPGFGGQSFI + KI LR+MC E+G++PWIEVDGG+
Sbjct: 124 PLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK 183
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277
P N ++V+EAGANA+VAGSAVF A +YAEAI G++ SKRP+
Sbjct: 184 PNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPE 224
>sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus subtilis (strain 168)
GN=rpe PE=3 SV=1
Length = 217
Score = 260 bits (665), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 137/218 (62%), Positives = 164/218 (75%), Gaps = 3/218 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
I V+PSILSA+FA LG ++K VE G D IH+DVMDG FVPNITIGPL+V+A+RPVTDLP
Sbjct: 2 IKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLP 61
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LDVHLMI EP++ +P F KAGADI+SVH E HLHRT+ IK+ G KAGVVLNP T
Sbjct: 62 LDVHLMIEEPDRYIPAFAKAGADILSVHAEACP--HLHRTIQLIKEQGVKAGVVLNPHTP 119
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG-VNPWIEVDGGVG 236
+ IE V D +DLVL+M+VNPGFGGQ FI S + KI +++RM EKG + IEVDGGV
Sbjct: 120 VQVIEHVFDDLDLVLLMTVNPGFGGQKFIHSVLPKIKEVKRMADEKGKKDLLIEVDGGVN 179
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274
+ A VIEAGAN LVAGSAV+G D +AI I+ SK
Sbjct: 180 KETAPLVIEAGANLLVAGSAVYGQSDRKKAISEIRGSK 217
>sp|Q04539|RPEP_CUPNH Ribulose-phosphate 3-epimerase, plasmid OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=cbbEP PE=3 SV=1
Length = 241
Score = 214 bits (545), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 151/229 (65%), Gaps = 6/229 (2%)
Query: 54 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113
S+ I ++PSILSA+FA+LGE+V A+E G D +H DVMD +V N+TIGPLV +A+RP+
Sbjct: 12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPL 71
Query: 114 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173
+P+DVHLM+ + +P F KAGA+++S H E S H+ RT+ I+D G KAG+VLN
Sbjct: 72 VSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR--HVDRTIGLIRDHGCKAGLVLN 129
Query: 174 PATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR----RMCLEKGVNPWI 229
PAT LS ++ LD +DLVL+MSVNPGFGGQ+FI + K+ R R G W+
Sbjct: 130 PATPLSWLDHTLDKLDLVLLMSVNPGFGGQAFIPGVLDKVRQARARIDRQVAAGGRPVWL 189
Query: 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQA 278
E+DGGV N ++ AGA+ VAGSAVFGA D +GI R A
Sbjct: 190 EIDGGVKADNITEIARAGADTFVAGSAVFGAPDADGGYRGILHRLREAA 238
>sp|P40117|RPEC_CUPNH Ribulose-phosphate 3-epimerase, chromosomal OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=cbbEC PE=3 SV=1
Length = 241
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/213 (51%), Positives = 145/213 (68%), Gaps = 6/213 (2%)
Query: 54 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113
S+ I ++PSILSA+FA+LGE+V A+E G D +H DVMD +VPN+TIGPLV +A+RP+
Sbjct: 12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPL 71
Query: 114 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173
+P+DVHLM+ + +P F KAGA+I+S H E S H+ RT+ I+D G KAG+VLN
Sbjct: 72 VSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR--HVDRTIGLIRDHGCKAGLVLN 129
Query: 174 PATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR----RMCLEKGVNPWI 229
PAT L ++ LD +DLVL+MSVNPGFGGQ+FI + K+ R R G W+
Sbjct: 130 PATPLGWLDHTLDQLDLVLLMSVNPGFGGQAFIPGVLDKVRQARARIDRQVDAGGRPVWL 189
Query: 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 262
E+DGGV N + AGA+ VAGSAVFGA D
Sbjct: 190 EIDGGVKADNIAAIARAGADTFVAGSAVFGAPD 222
>sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rpe PE=3 SV=1
Length = 224
Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 146/215 (67%), Gaps = 3/215 (1%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLP 117
+++PSILSA+ A+LG+ V+ V AG D IH DVMD +VPN+T GP V ALR P
Sbjct: 5 LIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAP 64
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
+DVHLM+ ++ +PDF KAGA+ ++ H E S H+ R+L I+D G K+G+V NPA
Sbjct: 65 IDVHLMVKPVDRIIPDFAKAGANYITFHPESSE--HIDRSLQLIRDCGCKSGLVFNPAMP 122
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
LS ++ VLD VD+VL+MSVNPGFGGQSFI + +KK+ R++ E G + +EVDGGV
Sbjct: 123 LSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQARKIIDESGYDIRLEVDGGVKV 182
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272
N ++ AGA+ VAGSA+FG DY + I I+T
Sbjct: 183 DNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQIRT 217
>sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus (strain VF5)
GN=rpe PE=3 SV=1
Length = 222
Score = 207 bits (526), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 146/216 (67%), Gaps = 6/216 (2%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
+++PSIL+ ++ +GEQ++A G D +H DVMDG FVPNIT G ++ +R LP+
Sbjct: 3 LLAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKRASLPI 62
Query: 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178
D HLMI P++ +P F++AGA+ +SVH E + H+HRTL IK+LGAKAGVV+NP TSL
Sbjct: 63 DAHLMIENPDKYIPKFVEAGANWISVHIE--NNYHIHRTLQLIKELGAKAGVVVNPGTSL 120
Query: 179 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP--WIEVDGGVG 236
SAIE L D VL+MSVNPGF GQ FIE ++++ L+ M +NP IE+DGG+
Sbjct: 121 SAIEEALYYADYVLLMSVNPGFSGQKFIERSIERLRILKEM--RDRINPSCLIEIDGGIK 178
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272
N +V+ AGA+ +V GS +FGAKD + +K+
Sbjct: 179 ENNIAEVVRAGADVVVVGSGIFGAKDIEAQTRKLKS 214
>sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3
SV=1
Length = 210
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 142/207 (68%), Gaps = 3/207 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDL 116
+++PSILSA+FA+LGE V AG D +H DVMD +VPN+TIGP+V +ALR
Sbjct: 4 FLIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCEALRNYGITA 63
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
P+DVHLM+ ++ VPDF KAGA +S H E S H+ RT+ IK+ G KAG+V NPAT
Sbjct: 64 PIDVHLMVKPVDRIVPDFAKAGASYISFHPEASE--HVDRTIQLIKEHGCKAGLVFNPAT 121
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
LS ++ V+D +D++L+MSVNPGFGGQSFI + K+ +R++ + G + +EVDGGV
Sbjct: 122 PLSYLDYVMDKIDVILLMSVNPGFGGQSFIHGTLDKLRQVRKLIDDSGRDIRLEVDGGVK 181
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDY 263
N ++ AGA+ VAGSA+FG DY
Sbjct: 182 VDNIAEIAAAGADMFVAGSAIFGQPDY 208
>sp|P0AG10|RPE_SHIFL Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3
SV=1
Length = 225
Score = 204 bits (519), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 145/216 (67%), Gaps = 3/216 (1%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLP 117
+++PSILSA+FA+LGE AG D +H DVMD +VPN+TIGP+V+ +LR P
Sbjct: 5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAP 64
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
+DVHLM+ ++ VPDF AGA I++ H E S H+ RTL IK+ G KAG+V NPAT
Sbjct: 65 IDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATP 122
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
LS ++ V+D +D++L+MSVNPGFGGQSFI + K+ ++RR E G + +EVDGGV
Sbjct: 123 LSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKV 182
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
N ++ AGA+ VAGSA+F DY + I +++
Sbjct: 183 NNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSE 218
>sp|P0AG07|RPE_ECOLI Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12)
GN=rpe PE=1 SV=1
Length = 225
Score = 204 bits (519), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 145/216 (67%), Gaps = 3/216 (1%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLP 117
+++PSILSA+FA+LGE AG D +H DVMD +VPN+TIGP+V+ +LR P
Sbjct: 5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAP 64
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
+DVHLM+ ++ VPDF AGA I++ H E S H+ RTL IK+ G KAG+V NPAT
Sbjct: 65 IDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATP 122
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
LS ++ V+D +D++L+MSVNPGFGGQSFI + K+ ++RR E G + +EVDGGV
Sbjct: 123 LSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKV 182
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
N ++ AGA+ VAGSA+F DY + I +++
Sbjct: 183 NNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSE 218
>sp|P0AG08|RPE_ECOL6 Ribulose-phosphate 3-epimerase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=rpe PE=3 SV=1
Length = 225
Score = 204 bits (519), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 145/216 (67%), Gaps = 3/216 (1%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLP 117
+++PSILSA+FA+LGE AG D +H DVMD +VPN+TIGP+V+ +LR P
Sbjct: 5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAP 64
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
+DVHLM+ ++ VPDF AGA I++ H E S H+ RTL IK+ G KAG+V NPAT
Sbjct: 65 IDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATP 122
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
LS ++ V+D +D++L+MSVNPGFGGQSFI + K+ ++RR E G + +EVDGGV
Sbjct: 123 LSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKV 182
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
N ++ AGA+ VAGSA+F DY + I +++
Sbjct: 183 NNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSE 218
>sp|P0AG09|RPE_ECO57 Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe
PE=3 SV=1
Length = 225
Score = 204 bits (519), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 145/216 (67%), Gaps = 3/216 (1%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLP 117
+++PSILSA+FA+LGE AG D +H DVMD +VPN+TIGP+V+ +LR P
Sbjct: 5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAP 64
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
+DVHLM+ ++ VPDF AGA I++ H E S H+ RTL IK+ G KAG+V NPAT
Sbjct: 65 IDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATP 122
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
LS ++ V+D +D++L+MSVNPGFGGQSFI + K+ ++RR E G + +EVDGGV
Sbjct: 123 LSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRRRIDESGFDIRLEVDGGVKV 182
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
N ++ AGA+ VAGSA+F DY + I +++
Sbjct: 183 NNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSE 218
>sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=rpe PE=3 SV=1
Length = 228
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/207 (48%), Positives = 140/207 (67%), Gaps = 3/207 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DL 116
++ SILSA+FA+LGE K AG DWIH DVMD +VPN+T+GP+++ ALR +
Sbjct: 4 FFLASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITV 63
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
P+DVHLM+ + +P F +AGAD ++ H E ST H+ RTLN IK+ G KAG+ LNPAT
Sbjct: 64 PIDVHLMVKPVDNLIPQFAEAGADFITFHPE--STDHIDRTLNLIKECGCKAGLALNPAT 121
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
SL+ ++ V++ +DL+L+MSVNPGFG QSF+ + K+ ++R+ N +EVDGGV
Sbjct: 122 SLNFLDYVMEKLDLILLMSVNPGFGNQSFLPTSFNKLREVRKKIELNSSNILLEVDGGVK 181
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDY 263
+N +V +GAN V GS +FG DY
Sbjct: 182 LENISEVAFSGANVFVIGSGIFGYTDY 208
>sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=rpe PE=3 SV=1
Length = 228
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 145/214 (67%), Gaps = 6/214 (2%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
++PSILSA+FA+L ++ KAVE G DW+HVDVMD FVPN+T+G VV++L TD PLD
Sbjct: 5 INPSILSADFARLADEAKAVE--GADWLHVDVMDNHFVPNLTLGVPVVESLARATDTPLD 62
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IHLHRTLNQIKDLGAKAGVVLNPATSL 178
HLMI P++ P +++AGA V+ H E ++ + L R +I+ GA+A + L PAT +
Sbjct: 63 CHLMIEAPDRWAPQYVEAGAGSVTFHAEAAAAPVRLAR---EIRAKGARASMALKPATPV 119
Query: 179 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238
E +L +D++LIM+V PGFGGQ+F++ + KI R + + G+ W++VDGGV
Sbjct: 120 EPYEDLLPELDMLLIMTVEPGFGGQAFLDIMLPKIRRTRELIKKHGLELWLQVDGGVSAA 179
Query: 239 NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272
+ +AGA+ VAGSAV+GA D AEA++ ++T
Sbjct: 180 TIERCADAGADVFVAGSAVYGASDPAEAVRALRT 213
>sp|P57603|RPE_BUCAI Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpe PE=3 SV=1
Length = 228
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 142/215 (66%), Gaps = 3/215 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DL 116
++PSILSA+FA+LGE +K V AG D IH DVMD +VPN+++GP+++++LR
Sbjct: 4 FFLAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLRNYNITA 63
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
P+DVHLM+ + +P F KAGA ++ H E +T+H+ RTLN IK+ G KAG+ NPAT
Sbjct: 64 PIDVHLMVKPVDNLIPQFAKAGATFITFHPE--ATLHIERTLNLIKENGCKAGLAFNPAT 121
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
L+ ++ +L+ +DL+L+MSVNPGFG QSF+ S K+ ++R++ + +EVDGGV
Sbjct: 122 PLNFLDYILEKLDLILLMSVNPGFGNQSFLPSTFNKLREVRKIIDANFSDILLEVDGGVK 181
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
N + AGAN V GS +F +Y I+ I+
Sbjct: 182 LDNIADIACAGANVFVMGSGLFKYSNYKLVIEKIR 216
>sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE
PE=3 SV=2
Length = 228
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/206 (47%), Positives = 134/206 (65%), Gaps = 6/206 (2%)
Query: 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP 112
F +S I ++PSILSA+FA G +++A+E G DW+HVDVMDG FVPN+T GP V A R
Sbjct: 3 FDRS-IKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRK 61
Query: 113 VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 172
+DVHLMI + + + +AGAD+++ H E H+HRTL I+ G K+GV +
Sbjct: 62 HVKTVMDVHLMISPVDAYIDAYAQAGADVLTAHVEAGP--HIHRTLQAIRAAGMKSGVAI 119
Query: 173 NPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232
NP T AIE VLD+ D+V +M+VNPGFGGQ +I+ K+ LR M ++ V+ IE+D
Sbjct: 120 NPGTPAEAIEHVLDIADVVCVMTVNPGFGGQKYID-MTAKVRKLRAMIGDRPVH--IEID 176
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVF 258
GG+ P A + AGA+ VAGS VF
Sbjct: 177 GGMDPVTAPLMAAAGADVFVAGSGVF 202
>sp|P51013|RPE_RHORU Ribulose-phosphate 3-epimerase OS=Rhodospirillum rubrum GN=cbbE
PE=3 SV=2
Length = 225
Score = 184 bits (468), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 139/218 (63%), Gaps = 13/218 (5%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
I ++PS+LSA+FA + + G D +H DVMD +VPN+T+GPLV ALRP T LP
Sbjct: 5 IRIAPSLLSADFAISRPRCPSDGRTGADILHFDVMDNHYVPNLTVGPLVCAALRPHTSLP 64
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
+DVHLM + + F +AGAD+++ H E S H+HR++ I+ G KAGV LNPA+
Sbjct: 65 IDVHLMTRPVDPLIDSFAEAGADMITFHPEASD--HVHRSVQMIRKRGLKAGVALNPASP 122
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL----RRMCLEKGVNPWIEVDG 233
LS ++ +L+ +DLVLIMSVNPGFGGQSFI S + KI+ L RR C VDG
Sbjct: 123 LSLLDHILEDLDLVLIMSVNPGFGGQSFIPSALPKIAALANGRRRACRGD------RVDG 176
Query: 234 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
GV P +A + GA+ LV A+FGA D A+AI I+
Sbjct: 177 GVNPADARALARPGADILVR-LAIFGASDRAKAIASIR 213
>sp|O66107|RPE_TREPA Ribulose-phosphate 3-epimerase OS=Treponema pallidum (strain
Nichols) GN=rpe PE=3 SV=1
Length = 218
Score = 181 bits (460), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 130/199 (65%), Gaps = 2/199 (1%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
++PS+LSA+F+ L + +E G W+H+DVMDG FVPN+T G V+ LR T LP D
Sbjct: 7 LAPSLLSADFSALDRALVYLEAHGAQWVHLDVMDGHFVPNLTFGAPVLRCLRSKTHLPFD 66
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
VHLM+ P + DF++AGAD ++ H E + +H HR ++ I+ G K G+ L P+T ++
Sbjct: 67 VHLMVSRPADLIEDFVQAGADFLTFHIE--AEVHAHRLIHAIRGRGVKVGISLVPSTPVA 124
Query: 180 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
A+ VL VDLVL+M+VNPGF GQ I + K+S L +M E+G + I VDGG+ +
Sbjct: 125 ALSEVLPFVDLVLVMTVNPGFSGQQMIAHCLSKVSALVQMRTERGYSYMISVDGGIDCRT 184
Query: 240 AYKVIEAGANALVAGSAVF 258
+ ++AGA+ +V+GSA F
Sbjct: 185 LPQALDAGADVIVSGSAFF 203
>sp|Q9ZJ75|RPE_HELPJ Ribulose-phosphate 3-epimerase OS=Helicobacter pylori (strain J99)
GN=rpe PE=3 SV=1
Length = 217
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 144/221 (65%), Gaps = 8/221 (3%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
V+PS+LSA+F L +++++V + D++HVDVMDG +VPN+T+GP++++ + ++ +PLD
Sbjct: 3 VAPSLLSADFMHLAKEIESV--SNADFLHVDVMDGHYVPNLTMGPVILENVTQMSQVPLD 60
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
VHLM+ V F I+S+H E H HR L IK G G+VLNP T
Sbjct: 61 VHLMVENASFFVELFAPLNPQIISIHAENEK--HPHRVLQLIKSSGITPGIVLNPHTHEE 118
Query: 180 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP--WIEVDGGVGP 237
+I+ +L+ V LVL+MSVNPGFGGQ F++ ++K ++ + K NP +EVDGGV
Sbjct: 119 SIKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELI--KRYNPSCLLEVDGGVND 176
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQA 278
KN +++ +AG + +V+GS +F +KD AI+G++ ++P A
Sbjct: 177 KNIFELQQAGVDVVVSGSYIFESKDRKLAIEGLQNVRQPLA 217
>sp|P56188|RPE_HELPY Ribulose-phosphate 3-epimerase OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=rpe PE=3 SV=1
Length = 217
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 144/221 (65%), Gaps = 8/221 (3%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
V+PS+LSA+F L +++++V + D++HVDVMDG +VPN+T+GP+V++ + ++ +PLD
Sbjct: 3 VAPSLLSADFMHLAKEIESV--SNADFLHVDVMDGHYVPNLTMGPVVLENVTQMSQVPLD 60
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
VHLM+ F I+S+H E H HR L IK+LG G+VLNP T
Sbjct: 61 VHLMVENASFFAELFAPLKPQIISIHAENEK--HPHRVLQLIKNLGITPGIVLNPHTHEE 118
Query: 180 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP--WIEVDGGVGP 237
+I+ +L+ V LVL+MSVNPGFGGQ F++ ++K ++ + K NP +EVDGGV
Sbjct: 119 SIKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELI--KRYNPSCLLEVDGGVND 176
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQA 278
KN +++ +AG + +V+GS +F +KD AI+G++ ++ A
Sbjct: 177 KNIFELQQAGVDVVVSGSYIFKSKDRKLAIEGLQNVRQSLA 217
>sp|Q58093|RPE_METJA Ribulose-phosphate 3-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rpe PE=3 SV=1
Length = 234
Score = 172 bits (435), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 134/216 (62%), Gaps = 4/216 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
I + SILSA+F L E++K E AG D+ HVD+MDG FVPNI++G + ++ +T+LP
Sbjct: 2 IKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELP 61
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
++VHLM+ + V +F D ++ H E + R +N+IK +GAK V LNPAT
Sbjct: 62 VEVHLMVENVDLFVNEF--EEMDYITFHIE--AVKFPFRIINRIKSIGAKPIVALNPATP 117
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
L AIE +L V VL+M+V PGF GQ FI KKI L+ M +E G + I VDGG+
Sbjct: 118 LDAIEYILGDVYAVLVMTVEPGFSGQKFIPVMTKKIRKLKSMIVENGYDTKIFVDGGINV 177
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+ A ++AGA+ LVA SA+FG D A+K ++ +
Sbjct: 178 ETAPLAVKAGADVLVAASAIFGKDDVKTAVKNLREA 213
>sp|Q89A59|RPE_BUCBP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=rpe PE=3 SV=1
Length = 228
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 132/216 (61%), Gaps = 5/216 (2%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP- 117
++S S+LSANF++LGE + V +G D IH DVMD +V N+T GP+V+++LR V +
Sbjct: 5 LLSSSVLSANFSRLGEDIFDVLKSGSDMIHYDVMDNHYVKNLTFGPIVLESLRSVEKIKS 64
Query: 118 --LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 175
+DVHLM + + F K +I+S H E ST ++ +T+ IK G K G+ LNP
Sbjct: 65 MVIDVHLMTCPVDDLIIKFAKLDVNIISFHPE--STNNVEKTIKLIKSYGCKVGLALNPL 122
Query: 176 TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
T L ++ VLD +DL+L+MSVNPGF GQ FI S + KI +R + + N +EVDGG+
Sbjct: 123 TPLCVLDNVLDKIDLILLMSVNPGFPGQKFIPSILNKIRIVRELIDKSKKNILLEVDGGI 182
Query: 236 GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
N +K+ G + V GSA+F + +Y I+ +
Sbjct: 183 NLSNIFKIASFGTDIFVIGSAIFNSINYDLTIRSFR 218
>sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe
PE=3 SV=1
Length = 229
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 127/202 (62%), Gaps = 6/202 (2%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
+++PSIL+A+FA+L ++ AV G DW+HVDVMDG FVPN+TIG VV++L VTD+P+
Sbjct: 9 LIAPSILAADFARLADEAAAVN--GADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIPM 66
Query: 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IHLHRTLNQIKDLGAKAGVVLNPATS 177
D HLMI P++ P + +AGA V+ H E + + + R I+ GAKAG+ + P T
Sbjct: 67 DCHLMIDNPDRWAPPYAEAGAYNVTFHAEATDNPVGVAR---DIRAAGAKAGISVKPGTP 123
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
L +L D +L+MSV PGFGGQ FI + K+ +R+M + +E+DGG+
Sbjct: 124 LEPYLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGIND 183
Query: 238 KNAYKVIEAGANALVAGSAVFG 259
+ EAG + VAGSAV+G
Sbjct: 184 DTIEQAAEAGVDCFVAGSAVYG 205
>sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=rpe PE=3 SV=1
Length = 229
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 127/202 (62%), Gaps = 6/202 (2%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
+++PSIL+A+FA+L ++ AV G DW+HVDVMDG FVPN+TIG VV++L VTD+P+
Sbjct: 9 LIAPSILAADFARLADEAAAVN--GADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIPM 66
Query: 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST-IHLHRTLNQIKDLGAKAGVVLNPATS 177
D HLMI P++ P + +AGA V+ H E + + + R I+ GAKAG+ + P T
Sbjct: 67 DCHLMIDNPDRWAPPYAEAGAYNVTFHAEATDNPVGVAR---DIRAAGAKAGISVKPGTP 123
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
L +L D +L+MSV PGFGGQ FI + K+ +R+M + +E+DGG+
Sbjct: 124 LEPYLDILPHFDTLLVMSVEPGFGGQRFIPEVLSKVRAVRKMVDAGELTILVEIDGGIND 183
Query: 238 KNAYKVIEAGANALVAGSAVFG 259
+ EAG + VAGSAV+G
Sbjct: 184 DTIEQAAEAGVDCFVAGSAVYG 205
>sp|Q9PKR7|RPE_CHLMU Ribulose-phosphate 3-epimerase OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=rpe PE=3 SV=1
Length = 228
Score = 164 bits (414), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 129/206 (62%), Gaps = 4/206 (1%)
Query: 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 114
K ++++PSI+ A+ A LG+ + +E +G + IH+DVMDG FVPNIT GP ++ A+ T
Sbjct: 3 KQGVLIAPSIMGADLACLGDAARNIEESGANLIHIDVMDGHFVPNITFGPGIIAAINRST 62
Query: 115 DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 174
DL L+VH MI P + V F+KAGAD + VH E + +L L+ I+ G +AG+ +P
Sbjct: 63 DLFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAE--NLKEILDYIRKCGVQAGIAFSP 120
Query: 175 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR--MCLEKGVNPWIEVD 232
TS+ I + + D++L+MSV PGF GQ FI ++KI +R+ L K + IEVD
Sbjct: 121 ETSIEFISAFIPLCDVILLMSVQPGFCGQKFIPDTIEKIRFVRQAIQTLGKEGSCLIEVD 180
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVF 258
GG+ ++A EAGA+ LVA S F
Sbjct: 181 GGIDEESARACREAGADILVAASYFF 206
>sp|O84123|RPE_CHLTR Ribulose-phosphate 3-epimerase OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpe PE=3 SV=1
Length = 233
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 131/212 (61%), Gaps = 4/212 (1%)
Query: 49 RVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVD 108
R + K ++V+PSI+ A+ A +G + + +E +G D IH+DVMDG FVPNIT GP VV
Sbjct: 2 REEAMKKQGVLVAPSIMGADLACIGREARNIEESGADLIHIDVMDGHFVPNITFGPGVVA 61
Query: 109 ALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA 168
A+ T+L L+VH MI P + V F+KAGAD + VH E + I ++ I+ G +A
Sbjct: 62 AINRSTELFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAENI--KEIISYIQKCGVQA 119
Query: 169 GVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR--MCLEKGVN 226
GV +P TS+ + + + D++L+MSV+PGF GQ FI +++I +++ L + +
Sbjct: 120 GVAFSPETSIEFVTSFIPLCDVILLMSVHPGFCGQKFIPDTIERIQFVKQAIQVLGREGS 179
Query: 227 PWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258
IEVDGG+ ++A EAGA+ LVA S F
Sbjct: 180 CLIEVDGGIDKESARACREAGADILVAASYFF 211
>sp|Q9CCP9|RPE_MYCLE Ribulose-phosphate 3-epimerase OS=Mycobacterium leprae (strain TN)
GN=rpe PE=3 SV=1
Length = 224
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 126/201 (62%), Gaps = 4/201 (1%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
+++PSIL+A+FA+L ++ V A DW+HVDVMDG FVPN+TIG VV +L +D+P+
Sbjct: 4 LIAPSILAADFARLTDEAAVV--ASADWLHVDVMDGHFVPNLTIGLPVVQSLLAASDIPM 61
Query: 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178
D HLMI P++ P + +AGA V+ H E +T + + I+ GAKAG+ + P T L
Sbjct: 62 DCHLMIDNPDRWAPPYAEAGAYNVTFHAE--ATDNPVGVAHDIRTAGAKAGIGVKPGTPL 119
Query: 179 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238
+ +L D +LIMSV PGFGGQ+FI + K+ +R+M + +E+DGG+
Sbjct: 120 NPYLDILPHFDTLLIMSVEPGFGGQAFIPEVLSKVRTVRKMVDAGELTILVEIDGGINAD 179
Query: 239 NAYKVIEAGANALVAGSAVFG 259
+ EAG + VAGSAV+G
Sbjct: 180 TIEQAAEAGVDCFVAGSAVYG 200
>sp|Q9Z8Z9|RPE_CHLPN Ribulose-phosphate 3-epimerase OS=Chlamydia pneumoniae GN=rpe PE=3
SV=1
Length = 229
Score = 157 bits (398), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 128/212 (60%), Gaps = 4/212 (1%)
Query: 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 114
+ ++V PSI+ A+ LG + K +E AG D+IH+D+MDG FVPN+T GP ++ A+ T
Sbjct: 4 QESVLVGPSIMGADLTCLGVEAKKLEQAGSDFIHIDIMDGHFVPNLTFGPGIIAAINRST 63
Query: 115 DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 174
DL L+VH MI P + + F+++GAD + VH E S I L+ IK G +AG+ +P
Sbjct: 64 DLFLEVHAMIYNPFEFIESFVRSGADRIIVHFEASEDI--KELLSYIKKCGVQAGLAFSP 121
Query: 175 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP--WIEVD 232
TS+ + L D+V++MSV PGF GQSF+ + ++KI+ R G+ IEVD
Sbjct: 122 DTSIEFLPSFLPFCDVVVLMSVYPGFTGQSFLPNTIEKIAFARHAIKTLGLKDSCLIEVD 181
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYA 264
GG+ ++A +AGA+ LV S +F A A
Sbjct: 182 GGIDQQSAPLCRDAGADILVTASYLFEADSLA 213
>sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa
subsp. japonica GN=Os09g0505700 PE=1 SV=1
Length = 228
Score = 157 bits (397), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 126/217 (58%), Gaps = 8/217 (3%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
++PS+LS++FA L + + G DW+H+D+MDG FVPN+TIG V+ +LR T LD
Sbjct: 9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLD 68
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
HLM+ P V KAGA + H E S + + IK G + GV L P T +
Sbjct: 69 CHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD-NWQELIQSIKAKGMRPGVSLRPGTPVE 127
Query: 180 AIECVLDV---VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
+ +++ V+LVL+M+V PGFGGQ F+ ++K+ LR+ K + IEVDGG+G
Sbjct: 128 EVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRK----KYPSLDIEVDGGLG 183
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
P AGAN +VAGS++FGA + E I ++ S
Sbjct: 184 PSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKS 220
>sp|P46969|RPE_YEAST Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPE1 PE=1 SV=1
Length = 238
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 130/227 (57%), Gaps = 21/227 (9%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP- 117
I++PSIL+++FA LG + V AG DW+H+DVMDG FVPNIT+G +V +LR P
Sbjct: 5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPG 64
Query: 118 ------------LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDL 164
D H+M+ PE+ V DF K GAD + H E + +HL + IK
Sbjct: 65 DASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHL---VKLIKSK 121
Query: 165 GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG 224
G KA + P TS+ + + +D+ L+M+V PGFGGQ F+E + K+ LR K
Sbjct: 122 GIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKFMEDMMPKVETLR----AKF 177
Query: 225 VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
+ I+VDGG+G + K +AGAN +VAG++VF A D + I +K
Sbjct: 178 PHLNIQVDGGLGKETIPKAAKAGANVIVAGTSVFTAADPHDVISFMK 224
>sp|O14105|RPE_SCHPO Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC31G5.05c PE=3 SV=1
Length = 228
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 127/217 (58%), Gaps = 9/217 (4%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR---PVTDL 116
++PS+L+ +FA L ++V + G DW+HVDVMD +FVPN+TIGP+VV A+R +
Sbjct: 6 IAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYTKEEA 65
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
D HLM++EPE+ + AGA + H E +T +++ + G G L P T
Sbjct: 66 FFDCHLMVIEPERYIDQLADAGASLFCFHYE--ATEKHEEIISRAHEKGMLVGCALKPKT 123
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
+ I ++ +D+VL+M+V PG GGQSF+ + K+ LR+ K +EVDGG+
Sbjct: 124 PVEVILPFVEKLDMVLVMTVEPGKGGQSFMPECLPKVEFLRK----KYPTLNVEVDGGLS 179
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
K +AGAN +VAG+AVF A+ E I G++ S
Sbjct: 180 LKTVDAAADAGANVIVAGTAVFHAQSPEEVISGLRNS 216
>sp|Q755M2|RPE_ASHGO Ribulose-phosphate 3-epimerase OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPE1
PE=3 SV=1
Length = 239
Score = 147 bits (372), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 131/228 (57%), Gaps = 17/228 (7%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV----- 113
I++PSIL+++FA L V AG +W+H+DVMDG FVPNIT+GP +V +LR
Sbjct: 5 IIAPSILASDFANLECGCHRVINAGAEWLHIDVMDGHFVPNITLGPPIVKSLRKAVPRVG 64
Query: 114 ---TDLP---LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK 167
+D P D H+M+ EPE+ V F++ GAD + H E +T + + IK G +
Sbjct: 65 DKESDKPKAFFDCHMMVAEPEKWVDVFVENGADQFTFHYE--ATKNPLELVKLIKSRGIR 122
Query: 168 AGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227
A + P T + + + +D+ L+M+V PGFGGQ F+ + K++ LR EK
Sbjct: 123 AACAIKPDTPVDVLFELAPYLDMALVMTVEPGFGGQKFMPDMMPKVAALR----EKFPQL 178
Query: 228 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275
I+VDGG+G + +AGAN +VAG++VF A D + I +K + R
Sbjct: 179 DIQVDGGLGKETIPHAAKAGANVIVAGTSVFAAADQKDVISYMKDNVR 226
>sp|Q96AT9|RPE_HUMAN Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1
Length = 228
Score = 147 bits (371), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 123/205 (60%), Gaps = 8/205 (3%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLP 117
+ PSIL+++ A LG + + +G D++H+DVMDG FVPNIT G VV++LR D
Sbjct: 7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPF 66
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
D+H+M+ +PEQ V AGA+ + H E +T + + I++ G K G+ + P TS
Sbjct: 67 FDMHMMVSKPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIKPGTS 124
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+ + + +D+ L+M+V PGFGGQ F+E + K+ LR IEVDGGVGP
Sbjct: 125 VEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLD----IEVDGGVGP 180
Query: 238 KNAYKVIEAGANALVAGSAVFGAKD 262
+K EAGAN +V+GSA+ ++D
Sbjct: 181 DTVHKCAEAGANMIVSGSAIMRSED 205
>sp|Q5R5Y2|RPE_PONAB Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1
Length = 228
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 123/205 (60%), Gaps = 8/205 (3%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLP 117
+ PSIL+++ A LG + + +G D++H+DVMDG FVPNIT G VV++LR D
Sbjct: 7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPF 66
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
D+H+M+ +PEQ V AGA+ + H E +T + + I++ G K G+ + P TS
Sbjct: 67 FDMHMMVSKPEQWVKPMAVAGANQYAFHLE--ATENPGALIKDIRENGMKVGLAIKPGTS 124
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+ + + +D+ L+M+V PGFGGQ F+E + K+ LR IEVDGGVGP
Sbjct: 125 VEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLD----IEVDGGVGP 180
Query: 238 KNAYKVIEAGANALVAGSAVFGAKD 262
+K EAGAN +V+GSA+ ++D
Sbjct: 181 DTVHKCAEAGANMIVSGSAIMRSED 205
>sp|Q6FL81|RPE_CANGA Ribulose-phosphate 3-epimerase OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPE1 PE=3 SV=1
Length = 246
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 129/235 (54%), Gaps = 22/235 (9%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP- 117
I++PSIL+++FA LG + V +G +W+H+DVMDG FVPNIT+G +V +LR
Sbjct: 5 IIAPSILASDFANLGCECHRVINSGAEWLHIDVMDGHFVPNITLGQPIVTSLRRAVPRSQ 64
Query: 118 ---------------LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK 162
D H+M+ EPE+ V DF KAGAD + H E +T + IK
Sbjct: 65 EEEKASGEVARPTAFFDCHMMVEEPEKWVADFAKAGADQFTFHYE--ATKDPLSLVKLIK 122
Query: 163 DLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLE 222
+ G KA + P T + + + +D+ L+M+V PGFGGQ F+ + K+ LR
Sbjct: 123 ENGIKAACAIKPGTPVDVLFELAPYLDMALVMTVEPGFGGQKFMPDMMPKVEALRT---- 178
Query: 223 KGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277
K + I+VDGG+G + +AGAN +VAG++VF A D E I +K R +
Sbjct: 179 KFPHMNIQVDGGLGKETIGVAAKAGANVIVAGTSVFTASDPHEVISFMKEEVRKE 233
>sp|Q8VEE0|RPE_MOUSE Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1
Length = 228
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 122/207 (58%), Gaps = 12/207 (5%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLP 117
+ PSIL+++ A LG + + +G D++H+DVMDG FVPNIT G VV++LR D
Sbjct: 7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPF 66
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
D+H+M+ PEQ V AGA+ + H E +T + + I++ G K G+ + P T+
Sbjct: 67 FDMHMMVSRPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIKPGTT 124
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRM--CLEKGVNPWIEVDGGV 235
+ + + +D+ L+M+V PGFGGQ F+E + K+ LR L+ IEVDGGV
Sbjct: 125 VEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPTLD------IEVDGGV 178
Query: 236 GPKNAYKVIEAGANALVAGSAVFGAKD 262
GP K EAGAN +V+GSA+ + D
Sbjct: 179 GPDTVQKCAEAGANMIVSGSAIMRSDD 205
>sp|P32719|ALSE_ECOLI D-allulose-6-phosphate 3-epimerase OS=Escherichia coli (strain K12)
GN=alsE PE=1 SV=1
Length = 231
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 122/208 (58%), Gaps = 4/208 (1%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
+SPS++ + K EQ++ ++ + D+ H+D+MDG FVPN+T+ P V ++ + PLD
Sbjct: 3 ISPSLMCMDLLKFKEQIEFID-SHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLD 61
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
HLM+ P+ + +AGAD +++H E + R +++I+ K G++LNP T +
Sbjct: 62 CHLMVTRPQDYIAQLARAGADFITLHPETING-QAFRLIDEIRRHDMKVGLILNPETPVE 120
Query: 180 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
A++ + D + +M+V+PGF GQ FI + K+++L+ +G+ IEVDG
Sbjct: 121 AMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQAT 180
Query: 240 AYKVIEAGANALVAGSAVFGAKDYAEAI 267
K++ AGA+ + G++ G ++AE I
Sbjct: 181 YEKLMAAGADVFIVGTS--GLFNHAENI 206
>sp|Q8SRP6|RPE_ENCCU Ribulose-phosphate 3-epimerase OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPE1 PE=3 SV=1
Length = 217
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 105/214 (49%), Gaps = 20/214 (9%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
+ SIL NF L E++ ++ G IH+DVMD FV NIT GP +++ + D D
Sbjct: 10 IGISILDCNFGNLEEELGELKRNGVTNIHLDVMDTTFVKNITFGPCIINRILE-HDFVFD 68
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVH---CEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
VH+M+ P + +V++H C+++ R N + G+ LNP T
Sbjct: 69 VHMMVESPLDIIMQIDLERVSLVTIHSEVCDKAGVAEYLRKRNVL------FGIALNPET 122
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
+ E + D VLIMSV PGFGGQ F E + K+ ++RR + +DGG+
Sbjct: 123 QVDDAE--MRSADFVLIMSVKPGFGGQKFQEECLAKVEEVRR------YGKMVGIDGGIE 174
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270
N ++ GA+ V GS F + D + ++ I
Sbjct: 175 MSNIGRI--TGADYAVVGSGYFRSGDRKKFLRDI 206
>sp|P39362|SGCE_ECOLI Protein SgcE OS=Escherichia coli (strain K12) GN=sgcE PE=3 SV=1
Length = 210
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 106/215 (49%), Gaps = 6/215 (2%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
+I+ PS+ SAN G ++ A++ +H+D+ D F+ NIT G V A+ T P
Sbjct: 1 MILHPSLASANPLHYGRELTALDNLDFGSLHLDIEDSSFINNITFGMKTVQAVARQTPHP 60
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
L H M+ P++ + + VH E + + TL +I+ GA+AG+V NPAT
Sbjct: 61 LSFHFMLARPQRWFNALAEIRPAWIFVHAE--TLDYPSETLTEIRHTGARAGLVFNPATP 118
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+ A + +D V++M+ P GQ FI S +KI +R + W DGG+
Sbjct: 119 IDAWRYLASELDGVMVMTSEPDGQGQRFIPSMCEKIQKVRTAFPQTEC--W--ADGGITL 174
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272
A ++ AGA +V G A+F + DY + T
Sbjct: 175 AAAQQLAAAGAQHMVIGRALFSSSDYRATLAQFAT 209
>sp|Q5PJE1|LSRE_SALPA Putative epimerase LsrE OS=Salmonella paratyphi A (strain ATCC 9150
/ SARB42) GN=lsrE PE=3 SV=1
Length = 254
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 13/221 (5%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
+S IL+ + L ++ +E +H+D+MDG+F P T+GP V+ L P T + D
Sbjct: 22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVEQL-PQTFIK-D 79
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK---------DLGAKAGV 170
VHLM+ + +KAGA +++ E IHLH TL+ + ++ G+
Sbjct: 80 VHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGI 137
Query: 171 VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230
L PAT L I +L V+++ +++VNPG+G + ++++ L + +K I
Sbjct: 138 SLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV 197
Query: 231 VDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
+DG + +I G + +V+GSA+F AE + +
Sbjct: 198 IDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLAENTRSWR 238
>sp|Q8Z2Y1|LSRE_SALTI Putative epimerase LsrE OS=Salmonella typhi GN=lsrE PE=3 SV=1
Length = 254
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 13/208 (6%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
+S IL+ + L ++ +E +H+D+MDG+F P T+GP V L P T + D
Sbjct: 22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-D 79
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK---------DLGAKAGV 170
VHLM+ + +KAGA +++ E IHLH TL+ + ++ G+
Sbjct: 80 VHLMVADQWAAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIDGEMPVIRGI 137
Query: 171 VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230
L PAT L I +L V+++ +++VNPG+G + ++++ L + +K I
Sbjct: 138 SLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLYERVAQLLCLLGDKREGKIIV 197
Query: 231 VDGGVGPKNAYKVIEAGANALVAGSAVF 258
+DG + +I G + +V+GSA+F
Sbjct: 198 IDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|Q8ZKP8|LSRE_SALTY Putative epimerase LsrE OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=lsrE PE=2 SV=1
Length = 254
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 13/208 (6%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
+S IL+ + L ++ +E +H+D+MDG+F P T+GP V L P T + D
Sbjct: 22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-D 79
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK---------DLGAKAGV 170
VHLM+ + +KAGA +++ E IHLH TL+ + ++ G+
Sbjct: 80 VHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGI 137
Query: 171 VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230
L PAT L I +L V+++ +++VNPG+G + ++++ L + +K I
Sbjct: 138 SLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV 197
Query: 231 VDGGVGPKNAYKVIEAGANALVAGSAVF 258
+DG + +I G + +V+GSA+F
Sbjct: 198 IDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|A9MZG7|LSRE_SALPB Putative epimerase LsrE OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=lsrE PE=3 SV=1
Length = 254
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 13/208 (6%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
+S IL+ + L ++ +E +H+D+MDG+F P T+GP V L P T + D
Sbjct: 22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-D 79
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK---------DLGAKAGV 170
VHLM+ + +KAGA +++ E IHLH TL+ + ++ G+
Sbjct: 80 VHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGI 137
Query: 171 VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230
L PAT L I +L V+++ +++VNPG+G + ++++ L + +K I
Sbjct: 138 SLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV 197
Query: 231 VDGGVGPKNAYKVIEAGANALVAGSAVF 258
+DG + +I G + +V+GSA+F
Sbjct: 198 IDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|Q57HD7|LSRE_SALCH Putative epimerase LsrE OS=Salmonella choleraesuis (strain SC-B67)
GN=lsrE PE=3 SV=1
Length = 254
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 13/208 (6%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
+S IL+ + L ++ +E +H+D+MDG+F P T+GP V L P T + D
Sbjct: 22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-D 79
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK---------DLGAKAGV 170
VHLM+ + +KAGA +++ E IHLH TL+ + ++ G+
Sbjct: 80 VHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGI 137
Query: 171 VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230
L PAT L I +L V+++ +++VNPG+G + ++++ L + +K I
Sbjct: 138 SLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV 197
Query: 231 VDGGVGPKNAYKVIEAGANALVAGSAVF 258
+DG + +I G + +V+GSA+F
Sbjct: 198 IDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>sp|P75522|RPE_MYCPN Probable ribulose-phosphate 3-epimerase OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=rpe PE=3 SV=1
Length = 215
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 13/187 (6%)
Query: 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQR 130
KL EQ A G IH DVMD FV N +D L+ + ++VHLM+ EQ
Sbjct: 24 KLLEQFFA---DGLRLIHYDVMD-HFVDNTVFQGEHLDELQQIG-FQVNVHLMVQALEQI 78
Query: 131 VPDFIKAGA-DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVD 189
+P ++ A +S H E + + QIK G + G+ T L E ++ +D
Sbjct: 79 LPVYLHHQAVKRISFHVEPFDIPTIKHFIAQIKQAGKQVGLAFKFTTPLVNYERLVQQLD 138
Query: 190 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN 249
V +MSV PG GGQ+F + + + IE+DGG+ N ++ I+ N
Sbjct: 139 FVTLMSVPPGKGGQAFNSAVFNNLKQAHKYHCS------IEIDGGIKLDNIHQ-IQDDVN 191
Query: 250 ALVAGSA 256
+V GS
Sbjct: 192 FIVMGSG 198
>sp|P47358|RPE_MYCGE Probable ribulose-phosphate 3-epimerase OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=rpe PE=3 SV=1
Length = 209
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 83 GCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFIKAGAD 140
G IH DVMD +FV N +D L+ + ++VHLM+ EQ +P +F + +
Sbjct: 28 GLRLIHYDVMD-QFVHNTAFKGEYLDELKTI-GFDVNVHLMV---EQIIPQINFYLSQPN 82
Query: 141 I--VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP 198
+ +S H E S + + +K+ G + G+ T+L + +D + +MSV P
Sbjct: 83 VKRISFHVEPFSFAKIKELIQLVKENGKEVGLAFKFTTNLQLYQPFFTTIDFITLMSVPP 142
Query: 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256
G GGQ+F E+ + + N IE+DGG+ N + I+A + +V GS
Sbjct: 143 GKGGQAFNEAV------FTNLKIANHYNLKIEIDGGIKVNNIDQ-IKAFVDFIVMGSG 193
>sp|Q9PGC4|THIE_XYLFA Thiamine-phosphate synthase OS=Xylella fastidiosa (strain 9a5c)
GN=thiE PE=3 SV=1
Length = 234
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 199 GFGGQSFIESQVKKIS-----DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVA 253
GFG +F S K +L R GV P + + GG+ PKN +IEAGA L
Sbjct: 156 GFG--TFYPSHTKTTPYRATPELLRQTTHLGV-PRVAI-GGLTPKNIAPIIEAGAELLAV 211
Query: 254 GSAVFGAKDYAEAIKGIKT 272
S ++ AK+ A+K ++
Sbjct: 212 ISGIYSAKNPVTALKAYQS 230
>sp|O28964|FAEHP_ARCFU Bifunctional enzyme fae/hps OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=fae-hps PE=3 SV=1
Length = 394
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276
+ V GG+ P+N +VI AGA+ +V G AV A+D A++ + +P
Sbjct: 336 VAVAGGIRPENVEEVIAAGADIIVVGRAVTKARDVEGAVRKFMSHMKP 383
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,640,171
Number of Sequences: 539616
Number of extensions: 4059076
Number of successful extensions: 11630
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 11464
Number of HSP's gapped (non-prelim): 140
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)