Query 023494
Match_columns 281
No_of_seqs 174 out of 1268
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0036 Rpe Pentose-5-phosphat 100.0 1.2E-69 2.6E-74 476.9 24.9 217 56-275 2-218 (220)
2 PRK08745 ribulose-phosphate 3- 100.0 2.2E-67 4.7E-72 469.3 24.9 217 57-275 3-220 (223)
3 PRK08091 ribulose-phosphate 3- 100.0 6.7E-66 1.5E-70 459.7 25.4 214 57-274 12-227 (228)
4 PRK09722 allulose-6-phosphate 100.0 9.3E-66 2E-70 459.9 24.5 217 57-275 2-220 (229)
5 PRK08005 epimerase; Validated 100.0 2.7E-65 5.8E-70 451.6 23.3 208 58-271 1-208 (210)
6 PRK08883 ribulose-phosphate 3- 100.0 2.8E-65 6.1E-70 455.4 22.5 216 59-276 1-217 (220)
7 PRK14057 epimerase; Provisiona 100.0 7.9E-65 1.7E-69 458.0 25.0 215 57-275 19-242 (254)
8 KOG3111 D-ribulose-5-phosphate 100.0 2.1E-64 4.6E-69 431.4 21.6 217 56-278 3-221 (224)
9 PF00834 Ribul_P_3_epim: Ribul 100.0 6.5E-64 1.4E-68 440.8 20.1 201 59-261 1-201 (201)
10 PTZ00170 D-ribulose-5-phosphat 100.0 2.8E-57 6.2E-62 406.0 19.1 214 57-275 6-222 (228)
11 PLN02334 ribulose-phosphate 3- 100.0 1.2E-50 2.6E-55 362.9 23.9 226 51-281 1-229 (229)
12 PRK05581 ribulose-phosphate 3- 100.0 1.7E-41 3.6E-46 300.0 25.1 216 57-274 3-218 (220)
13 TIGR01163 rpe ribulose-phospha 100.0 9.5E-42 2.1E-46 299.0 22.8 210 60-271 1-210 (210)
14 cd00429 RPE Ribulose-5-phospha 100.0 1.7E-39 3.7E-44 284.3 23.9 211 59-271 1-211 (211)
15 PRK13307 bifunctional formalde 100.0 8.7E-33 1.9E-37 264.0 20.1 197 64-276 176-380 (391)
16 PRK13306 ulaD 3-keto-L-gulonat 100.0 1.1E-32 2.4E-37 245.2 18.1 203 62-275 5-212 (216)
17 cd04724 Tryptophan_synthase_al 100.0 4.5E-32 9.7E-37 245.1 18.2 190 60-259 2-220 (242)
18 PRK13813 orotidine 5'-phosphat 100.0 4.5E-32 9.8E-37 240.0 8.7 203 64-276 7-214 (215)
19 TIGR03128 RuMP_HxlA 3-hexulose 100.0 1.2E-29 2.6E-34 222.7 19.8 197 64-273 3-205 (206)
20 PRK13125 trpA tryptophan synth 100.0 3.1E-28 6.7E-33 220.2 22.3 203 58-271 4-234 (244)
21 TIGR00262 trpA tryptophan synt 100.0 1.4E-28 3E-33 224.1 20.1 209 57-274 9-252 (256)
22 cd04726 KGPDC_HPS 3-Keto-L-gul 100.0 8.9E-28 1.9E-32 209.7 17.8 192 64-269 4-201 (202)
23 COG0269 SgbH 3-hexulose-6-phos 99.9 2.5E-26 5.4E-31 201.6 18.5 201 65-276 8-214 (217)
24 CHL00200 trpA tryptophan synth 99.9 8.1E-24 1.7E-28 193.4 19.0 206 57-272 14-252 (263)
25 PRK00043 thiE thiamine-phospha 99.9 8.8E-24 1.9E-28 185.4 16.2 201 57-276 9-210 (212)
26 cd00564 TMP_TenI Thiamine mono 99.9 1.2E-23 2.6E-28 180.9 14.5 192 58-271 2-195 (196)
27 PRK00230 orotidine 5'-phosphat 99.9 3.6E-24 7.8E-29 192.2 11.5 203 62-275 4-228 (230)
28 PRK07028 bifunctional hexulose 99.9 8.5E-23 1.8E-27 198.4 18.0 196 64-275 7-211 (430)
29 PLN02591 tryptophan synthase 99.8 2.4E-17 5.3E-22 149.7 18.4 205 59-273 3-241 (250)
30 TIGR01740 pyrF orotidine 5'-ph 99.7 6.5E-17 1.4E-21 143.5 12.3 184 64-271 2-213 (213)
31 COG0352 ThiE Thiamine monophos 99.7 1.8E-16 3.9E-21 140.5 14.8 184 73-276 24-208 (211)
32 PRK13111 trpA tryptophan synth 99.7 4.7E-16 1E-20 142.0 17.9 194 56-260 10-234 (258)
33 PF00290 Trp_syntA: Tryptophan 99.7 1.2E-16 2.5E-21 145.8 13.8 208 57-275 9-252 (259)
34 PRK13305 sgbH 3-keto-L-gulonat 99.7 5.7E-17 1.2E-21 144.5 9.0 200 62-276 5-213 (218)
35 COG0159 TrpA Tryptophan syntha 99.7 1.3E-15 2.9E-20 138.4 17.9 192 57-259 16-238 (265)
36 cd00331 IGPS Indole-3-glycerol 99.6 6.6E-14 1.4E-18 124.1 19.9 185 70-270 31-217 (217)
37 cd04722 TIM_phosphate_binding 99.6 7.2E-14 1.6E-18 118.6 18.7 180 71-255 13-200 (200)
38 PRK12290 thiE thiamine-phospha 99.6 1.9E-14 4.1E-19 138.9 14.3 188 74-275 221-413 (437)
39 PRK06512 thiamine-phosphate py 99.5 1.6E-13 3.4E-18 122.8 14.8 197 58-276 16-214 (221)
40 TIGR00693 thiE thiamine-phosph 99.5 2.1E-13 4.5E-18 118.7 14.3 191 59-270 4-196 (196)
41 PRK07695 transcriptional regul 99.5 6.2E-13 1.3E-17 116.7 17.0 194 58-276 5-199 (201)
42 PRK02615 thiamine-phosphate py 99.5 2.5E-13 5.4E-18 128.7 14.5 203 50-277 141-345 (347)
43 PRK00278 trpC indole-3-glycero 99.5 4.6E-12 9.9E-17 115.9 20.2 187 71-272 71-258 (260)
44 KOG4175 Tryptophan synthase al 99.5 1.4E-11 3E-16 107.5 19.7 198 55-259 15-240 (268)
45 PRK03512 thiamine-phosphate py 99.4 3.6E-12 7.7E-17 113.3 16.3 183 74-275 23-207 (211)
46 PF02581 TMP-TENI: Thiamine mo 99.4 6.4E-12 1.4E-16 108.6 13.2 176 60-257 4-180 (180)
47 cd04725 OMP_decarboxylase_like 99.4 2.2E-12 4.7E-17 114.9 10.3 193 64-269 2-215 (216)
48 PF00215 OMPdecase: Orotidine 99.4 2.6E-13 5.7E-18 121.3 3.4 195 62-270 2-226 (226)
49 PRK09140 2-dehydro-3-deoxy-6-p 99.4 7.1E-11 1.5E-15 104.6 18.2 188 59-275 11-204 (206)
50 PLN02898 HMP-P kinase/thiamin- 99.3 1E-11 2.2E-16 123.2 13.4 186 71-275 308-496 (502)
51 PRK09517 multifunctional thiam 99.3 1.2E-11 2.5E-16 128.3 14.2 200 58-275 7-215 (755)
52 PRK01130 N-acetylmannosamine-6 99.3 2.8E-10 6.1E-15 101.2 18.7 189 57-267 6-215 (221)
53 COG0284 PyrF Orotidine-5'-phos 99.3 5.4E-11 1.2E-15 107.6 11.7 201 63-276 14-236 (240)
54 cd00452 KDPG_aldolase KDPG and 99.2 2E-10 4.3E-15 100.2 14.5 171 59-259 5-176 (190)
55 PRK07455 keto-hydroxyglutarate 99.2 8E-10 1.7E-14 96.4 17.2 172 59-260 13-186 (187)
56 cd00405 PRAI Phosphoribosylant 99.2 1.7E-09 3.7E-14 95.0 18.4 169 74-260 10-187 (203)
57 cd04729 NanE N-acetylmannosami 99.2 1.8E-09 3.9E-14 95.9 17.2 193 51-265 5-217 (219)
58 PRK08999 hypothetical protein; 99.1 3.8E-10 8.2E-15 105.1 11.9 179 58-258 133-312 (312)
59 cd04730 NPD_like 2-Nitropropan 99.1 1.7E-09 3.6E-14 96.5 15.4 143 105-260 43-191 (236)
60 cd04732 HisA HisA. Phosphorib 99.1 7.8E-09 1.7E-13 92.2 18.5 179 71-261 30-226 (234)
61 PRK06552 keto-hydroxyglutarate 99.1 6E-09 1.3E-13 92.8 16.9 187 59-275 14-210 (213)
62 TIGR00343 pyridoxal 5'-phospha 99.1 4.3E-09 9.4E-14 96.6 16.3 190 67-275 15-249 (287)
63 PRK05718 keto-hydroxyglutarate 99.1 9.9E-09 2.2E-13 91.4 16.6 174 59-261 16-190 (212)
64 PRK13585 1-(5-phosphoribosyl)- 99.0 1.8E-08 4E-13 90.4 18.0 185 71-267 33-236 (241)
65 TIGR00007 phosphoribosylformim 99.0 2.3E-08 4.9E-13 89.2 17.8 178 71-260 29-224 (230)
66 cd04727 pdxS PdxS is a subunit 99.0 2.3E-08 4.9E-13 91.8 17.4 189 68-275 14-246 (283)
67 PRK04302 triosephosphate isome 99.0 2.6E-08 5.7E-13 88.9 17.2 164 104-273 45-221 (223)
68 PRK04180 pyridoxal biosynthesi 98.9 9.3E-09 2E-13 94.6 12.1 193 67-275 22-255 (293)
69 cd04723 HisA_HisF Phosphoribos 98.9 1.2E-07 2.7E-12 85.3 17.6 175 72-260 37-224 (233)
70 cd00958 DhnA Class I fructose- 98.9 1.5E-07 3.3E-12 84.2 18.0 175 70-273 21-233 (235)
71 PF00218 IGPS: Indole-3-glycer 98.9 7.4E-08 1.6E-12 88.0 15.3 194 60-270 57-254 (254)
72 PF04131 NanE: Putative N-acet 98.9 4.6E-07 9.9E-12 78.9 18.8 174 76-275 5-191 (192)
73 COG0134 TrpC Indole-3-glycerol 98.8 5.4E-08 1.2E-12 88.4 12.5 196 60-271 55-253 (254)
74 PRK13957 indole-3-glycerol-pho 98.8 5E-07 1.1E-11 82.1 18.8 183 71-270 62-246 (247)
75 cd04731 HisF The cyclase subun 98.8 9.4E-07 2E-11 79.6 20.2 187 71-270 28-240 (243)
76 PRK00748 1-(5-phosphoribosyl)- 98.8 3.9E-07 8.5E-12 81.2 17.0 178 71-260 31-226 (233)
77 PRK13587 1-(5-phosphoribosyl)- 98.8 5.8E-07 1.2E-11 81.1 16.8 175 73-259 34-226 (234)
78 TIGR00735 hisF imidazoleglycer 98.8 1.4E-06 3.1E-11 79.3 19.6 189 70-270 30-246 (254)
79 TIGR01919 hisA-trpF 1-(5-phosp 98.8 7.3E-07 1.6E-11 81.0 17.5 183 71-266 32-238 (243)
80 PRK14024 phosphoribosyl isomer 98.7 2.3E-06 5E-11 77.4 20.4 186 71-269 33-238 (241)
81 TIGR01182 eda Entner-Doudoroff 98.7 1.7E-06 3.7E-11 76.6 18.4 172 59-261 9-183 (204)
82 PRK02083 imidazole glycerol ph 98.7 2.5E-06 5.4E-11 77.5 19.4 190 71-272 31-246 (253)
83 cd04740 DHOD_1B_like Dihydroor 98.7 5.4E-06 1.2E-10 76.8 21.0 151 105-260 76-266 (296)
84 PRK01033 imidazole glycerol ph 98.6 1.2E-05 2.5E-10 73.5 22.1 177 71-259 31-231 (258)
85 PF01081 Aldolase: KDPG and KH 98.6 1.1E-06 2.4E-11 77.3 14.5 173 59-261 9-183 (196)
86 TIGR03151 enACPred_II putative 98.6 1E-06 2.3E-11 82.5 15.0 139 105-259 52-195 (307)
87 PRK06806 fructose-bisphosphate 98.6 2.4E-06 5.1E-11 79.2 17.0 194 68-272 27-246 (281)
88 PRK06015 keto-hydroxyglutarate 98.6 5E-06 1.1E-10 73.5 18.2 171 59-260 5-178 (201)
89 TIGR03572 WbuZ glycosyl amidat 98.6 3.4E-06 7.3E-11 75.4 17.4 175 71-257 31-230 (232)
90 TIGR01334 modD putative molybd 98.6 7.9E-07 1.7E-11 82.2 13.5 141 103-258 109-267 (277)
91 COG0106 HisA Phosphoribosylfor 98.6 1E-05 2.2E-10 73.0 19.8 186 72-271 33-239 (241)
92 cd01568 QPRTase_NadC Quinolina 98.6 2.4E-07 5.3E-12 85.3 9.0 94 154-260 167-261 (269)
93 cd04728 ThiG Thiazole synthase 98.5 9.5E-07 2.1E-11 79.8 11.9 189 68-274 18-224 (248)
94 cd02810 DHOD_DHPD_FMN Dihydroo 98.5 3E-06 6.5E-11 78.1 15.6 144 114-260 97-278 (289)
95 PRK00208 thiG thiazole synthas 98.5 1.1E-06 2.3E-11 79.6 11.9 188 68-274 19-224 (250)
96 PRK13802 bifunctional indole-3 98.5 6.1E-06 1.3E-10 84.9 18.7 198 60-273 59-259 (695)
97 TIGR01949 AroFGH_arch predicte 98.5 7.7E-06 1.7E-10 74.6 17.5 179 68-275 34-248 (258)
98 PRK14114 1-(5-phosphoribosyl)- 98.5 1.3E-05 2.9E-10 72.7 18.3 186 66-268 29-238 (241)
99 COG3010 NanE Putative N-acetyl 98.5 9.3E-06 2E-10 71.5 15.9 175 77-276 40-228 (229)
100 PLN02460 indole-3-glycerol-pho 98.5 8.6E-06 1.9E-10 77.0 16.7 196 60-271 128-334 (338)
101 PRK13586 1-(5-phosphoribosyl)- 98.4 1.9E-05 4E-10 71.3 17.5 175 68-259 31-223 (232)
102 PLN02446 (5-phosphoribosyl)-5- 98.4 3.3E-05 7.1E-10 70.8 19.1 180 71-267 44-254 (262)
103 PF03437 BtpA: BtpA family; I 98.4 2.2E-05 4.7E-10 71.8 17.6 171 74-259 33-232 (254)
104 PRK07114 keto-hydroxyglutarate 98.4 2E-05 4.3E-10 70.8 16.6 171 59-260 16-194 (222)
105 PRK11572 copper homeostasis pr 98.4 1.1E-05 2.5E-10 73.2 15.0 163 71-252 10-196 (248)
106 PRK07226 fructose-bisphosphate 98.4 2.9E-05 6.3E-10 71.3 17.6 179 68-275 37-252 (267)
107 PRK07259 dihydroorotate dehydr 98.4 2E-05 4.3E-10 73.3 16.6 142 114-260 90-269 (301)
108 PF03932 CutC: CutC family; I 98.4 9E-06 2E-10 71.9 13.5 163 71-251 9-196 (201)
109 TIGR00259 thylakoid_BtpA membr 98.4 9.6E-05 2.1E-09 67.7 20.6 171 74-258 32-231 (257)
110 TIGR01859 fruc_bis_ald_ fructo 98.4 2.8E-05 6E-10 72.2 17.1 185 67-259 24-235 (282)
111 cd04739 DHOD_like Dihydroorota 98.4 1.1E-05 2.5E-10 76.1 14.5 178 57-274 99-288 (325)
112 PRK07315 fructose-bisphosphate 98.3 3.1E-05 6.7E-10 72.2 17.1 198 66-273 25-249 (293)
113 PF00977 His_biosynth: Histidi 98.3 3E-06 6.4E-11 76.1 9.7 183 62-259 24-225 (229)
114 PRK04128 1-(5-phosphoribosyl)- 98.3 5.8E-05 1.3E-09 67.9 18.0 172 71-261 31-218 (228)
115 TIGR02129 hisA_euk phosphoribo 98.3 2.4E-05 5.2E-10 71.4 15.2 168 74-259 42-237 (253)
116 cd02801 DUS_like_FMN Dihydrour 98.3 1E-05 2.2E-10 71.8 12.5 142 114-263 53-222 (231)
117 PRK06096 molybdenum transport 98.3 1E-05 2.3E-10 75.0 12.9 141 104-260 111-269 (284)
118 PRK01222 N-(5'-phosphoribosyl) 98.3 0.0001 2.2E-09 65.5 18.4 172 70-264 11-196 (210)
119 TIGR01037 pyrD_sub1_fam dihydr 98.3 4.9E-05 1.1E-09 70.6 17.1 155 115-274 90-284 (300)
120 PRK04169 geranylgeranylglycery 98.3 1.6E-05 3.5E-10 71.7 13.3 57 211-274 173-231 (232)
121 PRK07428 nicotinate-nucleotide 98.2 7.8E-06 1.7E-10 76.0 10.7 93 154-261 182-278 (288)
122 cd04738 DHOD_2_like Dihydrooro 98.2 8E-05 1.7E-09 70.3 16.8 195 62-259 51-314 (327)
123 PF04481 DUF561: Protein of un 98.2 0.00016 3.5E-09 64.3 16.7 204 55-275 12-238 (242)
124 PRK09427 bifunctional indole-3 98.2 7.3E-05 1.6E-09 73.7 15.7 194 60-272 59-256 (454)
125 cd02940 DHPD_FMN Dihydropyrimi 98.1 3.9E-05 8.5E-10 71.5 12.9 169 58-259 100-286 (299)
126 PRK07565 dihydroorotate dehydr 98.1 0.00012 2.5E-09 69.4 16.2 149 106-259 92-273 (334)
127 cd03174 DRE_TIM_metallolyase D 98.1 0.00016 3.5E-09 65.2 16.1 192 71-272 20-244 (265)
128 COG0135 TrpF Phosphoribosylant 98.1 0.00041 8.9E-09 61.7 18.2 173 70-264 10-196 (208)
129 TIGR00737 nifR3_yhdG putative 98.1 0.00012 2.5E-09 68.8 15.1 147 57-263 62-231 (319)
130 PF01884 PcrB: PcrB family; I 98.1 3.1E-05 6.7E-10 69.8 10.4 182 68-271 17-228 (230)
131 PRK06801 hypothetical protein; 98.1 0.0002 4.4E-09 66.6 15.9 185 67-259 26-238 (286)
132 PRK05848 nicotinate-nucleotide 98.0 4E-05 8.6E-10 70.8 10.8 94 153-261 167-264 (273)
133 TIGR01768 GGGP-family geranylg 98.0 0.00012 2.6E-09 65.8 13.5 166 72-260 16-214 (223)
134 TIGR02127 pyrF_sub2 orotidine 98.0 1.5E-05 3.3E-10 73.1 8.0 160 101-268 66-258 (261)
135 PF01729 QRPTase_C: Quinolinat 98.0 1.5E-05 3.2E-10 68.7 7.3 93 154-261 66-162 (169)
136 TIGR01769 GGGP geranylgeranylg 98.0 9.1E-05 2E-09 65.7 12.6 165 67-254 5-205 (205)
137 PRK05286 dihydroorotate dehydr 98.0 0.00018 3.8E-09 68.5 15.4 210 62-274 61-340 (344)
138 PRK08649 inosine 5-monophospha 98.0 0.0002 4.2E-09 68.9 15.5 133 128-264 144-296 (368)
139 TIGR01304 IMP_DH_rel_2 IMP deh 98.0 0.00017 3.7E-09 69.4 15.0 131 126-260 143-290 (369)
140 TIGR00734 hisAF_rel hisA/hisF 98.0 0.00014 3E-09 65.1 13.6 172 64-259 33-218 (221)
141 cd02809 alpha_hydroxyacid_oxid 98.0 0.00019 4.2E-09 66.9 15.0 143 108-258 108-260 (299)
142 PF00697 PRAI: N-(5'phosphorib 98.0 0.00012 2.5E-09 64.3 12.8 166 74-259 10-181 (197)
143 cd01572 QPRTase Quinolinate ph 98.0 4.2E-05 9.2E-10 70.5 10.3 89 154-260 168-260 (268)
144 PRK06843 inosine 5-monophospha 98.0 0.00015 3.2E-09 70.5 14.4 132 129-264 156-296 (404)
145 PRK08072 nicotinate-nucleotide 98.0 5.2E-05 1.1E-09 70.2 10.7 89 154-260 174-266 (277)
146 cd04741 DHOD_1A_like Dihydroor 98.0 0.001 2.2E-08 62.0 19.4 142 114-259 90-277 (294)
147 cd02812 PcrB_like PcrB_like pr 98.0 0.00014 3E-09 65.2 12.9 166 76-260 18-210 (219)
148 TIGR00078 nadC nicotinate-nucl 98.0 5.2E-05 1.1E-09 69.8 9.8 88 154-260 164-255 (265)
149 cd02803 OYE_like_FMN_family Ol 97.9 0.00021 4.6E-09 66.8 13.9 127 133-267 149-324 (327)
150 PLN02495 oxidoreductase, actin 97.9 0.00024 5.3E-09 68.6 14.2 188 58-275 114-322 (385)
151 PTZ00314 inosine-5'-monophosph 97.9 0.00053 1.2E-08 68.4 16.7 183 70-260 178-379 (495)
152 PLN02274 inosine-5'-monophosph 97.9 0.00038 8.2E-09 69.6 15.4 184 70-264 182-391 (505)
153 PF03060 NMO: Nitronate monoox 97.9 0.0003 6.6E-09 66.5 14.1 145 105-262 52-228 (330)
154 TIGR01302 IMP_dehydrog inosine 97.9 0.00076 1.7E-08 66.5 17.0 188 70-264 161-367 (450)
155 PRK05567 inosine 5'-monophosph 97.9 0.0015 3.2E-08 65.0 19.0 188 70-264 165-371 (486)
156 PRK13958 N-(5'-phosphoribosyl) 97.8 0.00089 1.9E-08 59.4 15.2 171 71-264 10-194 (207)
157 PRK11815 tRNA-dihydrouridine s 97.8 0.00033 7.2E-09 66.4 13.0 156 57-262 64-241 (333)
158 PRK10415 tRNA-dihydrouridine s 97.8 0.0031 6.6E-08 59.6 19.4 139 116-262 65-232 (321)
159 CHL00162 thiG thiamin biosynth 97.8 0.0032 6.9E-08 57.4 18.3 188 68-273 25-237 (267)
160 cd00945 Aldolase_Class_I Class 97.8 0.0009 2E-08 57.1 14.2 165 68-254 11-201 (201)
161 cd00381 IMPDH IMPDH: The catal 97.8 0.00079 1.7E-08 63.7 14.8 129 129-260 97-232 (325)
162 cd07937 DRE_TIM_PC_TC_5S Pyruv 97.8 0.0013 2.7E-08 60.8 15.5 171 71-252 22-222 (275)
163 COG1646 Predicted phosphate-bi 97.7 0.001 2.3E-08 59.7 14.2 137 119-261 16-227 (240)
164 PRK07107 inosine 5-monophospha 97.7 0.0012 2.5E-08 66.1 15.9 187 70-264 180-392 (502)
165 PRK05458 guanosine 5'-monophos 97.7 0.00058 1.3E-08 64.7 13.0 132 117-260 85-236 (326)
166 cd01573 modD_like ModD; Quinol 97.7 0.00018 3.9E-09 66.5 9.1 90 155-260 171-263 (272)
167 PRK07896 nicotinate-nucleotide 97.7 0.00021 4.7E-09 66.5 9.6 93 153-260 185-280 (289)
168 PRK05742 nicotinate-nucleotide 97.7 0.00023 4.9E-09 66.0 9.5 90 154-261 176-268 (277)
169 PRK08385 nicotinate-nucleotide 97.7 0.00026 5.6E-09 65.6 9.8 92 154-260 169-265 (278)
170 TIGR01036 pyrD_sub2 dihydrooro 97.7 0.0016 3.5E-08 61.8 15.2 195 62-259 58-322 (335)
171 PLN02716 nicotinate-nucleotide 97.7 0.00054 1.2E-08 64.3 11.4 95 153-260 185-296 (308)
172 PRK08227 autoinducer 2 aldolas 97.7 0.0026 5.6E-08 58.6 15.6 171 71-274 43-246 (264)
173 cd07938 DRE_TIM_HMGL 3-hydroxy 97.6 0.004 8.7E-08 57.5 16.9 165 73-252 23-223 (274)
174 PRK06256 biotin synthase; Vali 97.6 0.0056 1.2E-07 57.7 18.3 197 68-272 92-319 (336)
175 TIGR00559 pdxJ pyridoxine 5'-p 97.6 0.012 2.7E-07 53.1 19.2 197 68-275 19-236 (237)
176 PRK05500 bifunctional orotidin 97.6 0.0015 3.3E-08 64.8 14.6 181 71-275 41-259 (477)
177 PRK11840 bifunctional sulfur c 97.6 0.0011 2.4E-08 62.4 12.7 186 69-273 93-297 (326)
178 cd07944 DRE_TIM_HOA_like 4-hyd 97.6 0.0047 1E-07 56.8 16.6 175 70-251 20-212 (266)
179 TIGR00433 bioB biotin syntheta 97.6 0.0095 2.1E-07 54.8 18.7 182 71-260 66-279 (296)
180 COG0800 Eda 2-keto-3-deoxy-6-p 97.6 0.0018 4E-08 57.5 12.7 183 59-272 14-204 (211)
181 COG1830 FbaB DhnA-type fructos 97.5 0.006 1.3E-07 55.9 16.4 178 68-274 41-257 (265)
182 PLN02617 imidazole glycerol ph 97.5 0.009 2E-07 60.3 19.2 190 73-270 270-529 (538)
183 COG3142 CutC Uncharacterized p 97.5 0.0036 7.8E-08 56.2 14.1 162 76-257 14-202 (241)
184 PRK05265 pyridoxine 5'-phospha 97.5 0.02 4.4E-07 51.8 19.0 196 68-276 22-238 (239)
185 PRK06852 aldolase; Validated 97.5 0.0076 1.6E-07 56.6 16.9 183 68-273 57-286 (304)
186 cd07943 DRE_TIM_HOA 4-hydroxy- 97.5 0.0081 1.8E-07 54.9 16.9 172 71-251 23-214 (263)
187 PRK05692 hydroxymethylglutaryl 97.5 0.0066 1.4E-07 56.5 16.4 166 71-251 27-228 (287)
188 PRK02506 dihydroorotate dehydr 97.5 0.005 1.1E-07 57.9 15.6 159 114-275 91-293 (310)
189 PRK10550 tRNA-dihydrouridine s 97.5 0.0035 7.6E-08 59.0 14.5 140 115-262 62-232 (312)
190 PRK09016 quinolinate phosphori 97.5 0.00074 1.6E-08 63.0 9.7 86 154-257 195-283 (296)
191 PRK06543 nicotinate-nucleotide 97.5 0.001 2.2E-08 61.8 10.5 90 153-260 178-271 (281)
192 PRK09427 bifunctional indole-3 97.5 0.013 2.8E-07 58.0 18.6 166 74-264 268-442 (454)
193 cd04732 HisA HisA. Phosphorib 97.5 0.00044 9.6E-09 61.5 7.7 79 174-260 28-108 (234)
194 PRK14041 oxaloacetate decarbox 97.5 0.0056 1.2E-07 60.7 16.1 173 70-253 25-227 (467)
195 TIGR00736 nifR3_rel_arch TIM-b 97.4 0.0057 1.2E-07 55.3 14.8 175 65-260 25-226 (231)
196 PRK06106 nicotinate-nucleotide 97.4 0.0012 2.6E-08 61.3 10.6 89 154-260 180-272 (281)
197 PLN02826 dihydroorotate dehydr 97.4 0.018 3.8E-07 56.3 19.0 192 61-259 85-375 (409)
198 PRK14567 triosephosphate isome 97.4 0.003 6.6E-08 57.8 12.6 139 131-272 78-249 (253)
199 PRK08185 hypothetical protein; 97.4 0.016 3.4E-07 54.0 17.4 181 68-259 22-233 (283)
200 TIGR02311 HpaI 2,4-dihydroxyhe 97.4 0.0041 8.9E-08 56.7 13.3 175 74-256 24-233 (249)
201 COG0149 TpiA Triosephosphate i 97.4 0.0049 1.1E-07 56.2 13.7 137 131-272 81-249 (251)
202 PRK12331 oxaloacetate decarbox 97.4 0.0085 1.8E-07 59.2 16.3 172 71-253 27-228 (448)
203 cd00311 TIM Triosephosphate is 97.4 0.0035 7.6E-08 57.0 12.6 133 131-264 77-238 (242)
204 TIGR01108 oadA oxaloacetate de 97.4 0.0068 1.5E-07 61.7 16.0 172 70-252 21-222 (582)
205 cd04743 NPD_PKS 2-Nitropropane 97.4 0.0078 1.7E-07 56.9 15.3 146 106-262 45-211 (320)
206 PRK08318 dihydropyrimidine deh 97.4 0.008 1.7E-07 58.6 16.0 151 107-259 90-287 (420)
207 PRK07094 biotin synthase; Prov 97.4 0.0045 9.8E-08 57.9 13.6 177 68-252 71-278 (323)
208 PRK05437 isopentenyl pyrophosp 97.3 0.0045 9.8E-08 59.2 13.7 150 106-260 110-296 (352)
209 PRK08508 biotin synthase; Prov 97.3 0.026 5.6E-07 52.2 18.2 197 68-272 41-269 (279)
210 PF00478 IMPDH: IMP dehydrogen 97.3 0.0051 1.1E-07 58.8 13.7 181 68-260 46-246 (352)
211 PF01180 DHO_dh: Dihydroorotat 97.3 0.00086 1.9E-08 62.2 8.3 167 57-261 96-281 (295)
212 PRK06978 nicotinate-nucleotide 97.3 0.0014 3E-08 61.2 9.6 93 153-261 191-284 (294)
213 COG0167 PyrD Dihydroorotate de 97.3 0.0054 1.2E-07 57.7 13.6 186 58-275 97-293 (310)
214 PRK00125 pyrF orotidine 5'-pho 97.3 0.00093 2E-08 62.0 8.4 155 101-263 66-255 (278)
215 PRK14565 triosephosphate isome 97.3 0.0047 1E-07 56.0 12.6 135 131-269 78-233 (237)
216 PRK08195 4-hyroxy-2-oxovalerat 97.3 0.019 4E-07 54.7 17.2 172 70-251 25-218 (337)
217 PRK14114 1-(5-phosphoribosyl)- 97.3 0.001 2.3E-08 60.4 8.2 79 175-262 30-110 (241)
218 COG0157 NadC Nicotinate-nucleo 97.3 0.0025 5.4E-08 58.8 10.4 94 153-260 173-268 (280)
219 TIGR03217 4OH_2_O_val_ald 4-hy 97.3 0.024 5.1E-07 53.9 17.4 174 70-251 24-217 (333)
220 PRK06559 nicotinate-nucleotide 97.3 0.0022 4.7E-08 59.8 10.0 90 153-260 182-275 (290)
221 PRK13587 1-(5-phosphoribosyl)- 97.2 0.001 2.2E-08 60.1 7.5 79 175-261 31-112 (234)
222 PRK13803 bifunctional phosphor 97.2 0.037 8E-07 56.7 19.5 175 73-264 13-203 (610)
223 PF05690 ThiG: Thiazole biosyn 97.2 0.0021 4.6E-08 57.9 9.2 188 68-273 17-223 (247)
224 cd07939 DRE_TIM_NifV Streptomy 97.2 0.022 4.8E-07 51.9 16.1 169 71-258 21-216 (259)
225 KOG4201 Anthranilate synthase 97.2 0.0039 8.4E-08 55.6 10.5 197 60-272 80-284 (289)
226 cd02811 IDI-2_FMN Isopentenyl- 97.2 0.013 2.8E-07 55.5 14.9 149 106-259 102-289 (326)
227 PRK09282 pyruvate carboxylase 97.2 0.015 3.4E-07 59.3 16.4 173 70-253 26-228 (592)
228 cd07948 DRE_TIM_HCS Saccharomy 97.2 0.026 5.5E-07 51.9 16.2 164 71-251 23-213 (262)
229 TIGR03239 GarL 2-dehydro-3-deo 97.2 0.016 3.5E-07 52.9 14.7 175 74-256 24-232 (249)
230 PLN02363 phosphoribosylanthran 97.2 0.052 1.1E-06 49.8 18.1 169 69-258 54-232 (256)
231 cd00003 PNPsynthase Pyridoxine 97.1 0.093 2E-06 47.4 18.8 195 68-273 19-233 (234)
232 COG0434 SgcQ Predicted TIM-bar 97.1 0.022 4.7E-07 51.6 14.5 172 74-260 38-238 (263)
233 COG0214 SNZ1 Pyridoxine biosyn 97.1 0.015 3.3E-07 52.5 13.4 193 67-274 25-257 (296)
234 cd02922 FCB2_FMN Flavocytochro 97.1 0.019 4E-07 54.9 14.8 190 57-259 66-305 (344)
235 PLN02746 hydroxymethylglutaryl 97.1 0.032 6.9E-07 53.4 16.4 165 73-252 71-271 (347)
236 PRK14905 triosephosphate isome 97.1 0.012 2.6E-07 56.5 13.5 141 131-273 88-261 (355)
237 PRK07807 inosine 5-monophospha 97.1 0.0075 1.6E-07 60.0 12.6 130 129-264 230-370 (479)
238 TIGR00007 phosphoribosylformim 97.1 0.0019 4.2E-08 57.5 7.5 77 176-260 29-107 (230)
239 cd01571 NAPRTase_B Nicotinate 97.1 0.0074 1.6E-07 56.6 11.6 100 154-260 170-279 (302)
240 KOG1606 Stationary phase-induc 97.1 0.0057 1.2E-07 54.5 10.1 190 68-274 27-258 (296)
241 PRK12330 oxaloacetate decarbox 97.1 0.024 5.2E-07 56.7 15.8 173 71-252 28-230 (499)
242 PRK04128 1-(5-phosphoribosyl)- 97.0 0.0014 3E-08 59.0 6.4 75 176-258 31-106 (228)
243 TIGR01303 IMP_DH_rel_1 IMP deh 97.0 0.013 2.8E-07 58.3 13.8 135 128-265 227-369 (475)
244 TIGR02660 nifV_homocitr homoci 97.0 0.035 7.5E-07 53.3 16.3 181 71-270 24-237 (365)
245 cd04733 OYE_like_2_FMN Old yel 97.0 0.02 4.3E-07 54.2 14.5 126 133-266 157-334 (338)
246 PLN02389 biotin synthase 97.0 0.07 1.5E-06 51.6 18.4 196 68-272 117-349 (379)
247 PRK14024 phosphoribosyl isomer 97.0 0.0021 4.6E-08 58.1 7.5 77 176-261 33-111 (241)
248 cd04735 OYE_like_4_FMN Old yel 97.0 0.0085 1.8E-07 57.2 12.0 129 134-267 153-326 (353)
249 PRK10558 alpha-dehydro-beta-de 97.0 0.026 5.6E-07 51.7 14.6 176 74-257 31-240 (256)
250 cd02911 arch_FMN Archeal FMN-b 97.0 0.032 6.8E-07 50.4 14.9 139 104-256 62-222 (233)
251 cd04737 LOX_like_FMN L-Lactate 97.0 0.012 2.6E-07 56.3 12.9 48 209-259 262-310 (351)
252 PF03740 PdxJ: Pyridoxal phosp 97.0 0.023 4.9E-07 51.5 13.8 193 69-275 21-238 (239)
253 PRK00748 1-(5-phosphoribosyl)- 97.0 0.0022 4.8E-08 57.0 7.4 79 175-261 30-110 (233)
254 cd07945 DRE_TIM_CMS Leptospira 97.0 0.027 5.9E-07 52.2 14.7 160 74-252 23-221 (280)
255 PRK09250 fructose-bisphosphate 97.0 0.073 1.6E-06 50.8 17.7 179 68-264 89-328 (348)
256 PF04476 DUF556: Protein of un 97.0 0.12 2.5E-06 46.8 18.0 196 69-274 7-234 (235)
257 PRK10128 2-keto-3-deoxy-L-rham 97.0 0.021 4.7E-07 52.6 13.8 176 74-257 30-240 (267)
258 TIGR02151 IPP_isom_2 isopenten 97.0 0.018 3.8E-07 54.7 13.6 144 108-259 105-288 (333)
259 TIGR02129 hisA_euk phosphoribo 97.0 0.0035 7.6E-08 57.4 8.4 71 176-260 38-110 (253)
260 cd02933 OYE_like_FMN Old yello 97.0 0.018 4E-07 54.7 13.7 124 133-264 160-324 (338)
261 PRK13586 1-(5-phosphoribosyl)- 97.0 0.0026 5.6E-08 57.4 7.5 78 175-261 30-109 (232)
262 PRK11858 aksA trans-homoaconit 97.0 0.047 1E-06 52.7 16.6 163 71-251 27-217 (378)
263 PRK13585 1-(5-phosphoribosyl)- 97.0 0.0024 5.2E-08 57.3 7.2 78 176-261 33-112 (241)
264 PF00682 HMGL-like: HMGL-like 96.9 0.0074 1.6E-07 53.8 10.2 168 71-252 15-211 (237)
265 PLN02446 (5-phosphoribosyl)-5- 96.9 0.0037 8.1E-08 57.4 8.2 74 175-260 43-117 (262)
266 COG1891 Uncharacterized protei 96.9 0.063 1.4E-06 46.7 15.0 182 68-260 6-214 (235)
267 PRK02227 hypothetical protein; 96.9 0.11 2.4E-06 47.1 17.3 196 69-276 7-235 (238)
268 PRK14040 oxaloacetate decarbox 96.9 0.045 9.8E-07 55.9 16.6 192 70-271 27-251 (593)
269 TIGR00735 hisF imidazoleglycer 96.9 0.0028 6.1E-08 57.7 7.2 78 176-261 31-110 (254)
270 cd02932 OYE_YqiM_FMN Old yello 96.9 0.017 3.7E-07 54.6 12.8 124 134-264 163-330 (336)
271 PRK05096 guanosine 5'-monophos 96.9 0.091 2E-06 50.0 17.4 140 120-264 97-253 (346)
272 TIGR00742 yjbN tRNA dihydrouri 96.9 0.053 1.1E-06 51.2 15.9 143 114-261 53-230 (318)
273 PRK00042 tpiA triosephosphate 96.9 0.024 5.1E-07 51.9 13.0 139 131-269 79-247 (250)
274 PLN02617 imidazole glycerol ph 96.8 0.0058 1.3E-07 61.6 9.4 81 175-260 267-360 (538)
275 TIGR01306 GMP_reduct_2 guanosi 96.8 0.034 7.3E-07 52.7 13.9 125 129-260 97-233 (321)
276 PLN02429 triosephosphate isome 96.8 0.025 5.4E-07 53.3 12.9 139 131-269 140-307 (315)
277 TIGR03572 WbuZ glycosyl amidat 96.8 0.0048 1E-07 55.1 7.8 78 176-261 31-110 (232)
278 PTZ00333 triosephosphate isome 96.8 0.04 8.6E-07 50.5 13.9 136 131-269 82-250 (255)
279 PRK13523 NADPH dehydrogenase N 96.8 0.022 4.9E-07 54.1 12.6 125 134-266 151-317 (337)
280 COG0325 Predicted enzyme with 96.8 0.071 1.5E-06 48.0 14.8 184 61-262 27-227 (228)
281 TIGR01305 GMP_reduct_1 guanosi 96.8 0.032 6.9E-07 53.0 13.2 131 130-264 111-252 (343)
282 PRK14042 pyruvate carboxylase 96.8 0.081 1.8E-06 54.1 17.0 171 71-252 27-227 (596)
283 PRK15492 triosephosphate isome 96.8 0.024 5.3E-07 52.1 12.1 135 131-267 87-254 (260)
284 cd07941 DRE_TIM_LeuA3 Desulfob 96.7 0.086 1.9E-06 48.5 15.7 183 71-271 21-248 (273)
285 PRK02083 imidazole glycerol ph 96.7 0.0075 1.6E-07 54.7 8.4 78 176-261 31-110 (253)
286 cd07940 DRE_TIM_IPMS 2-isoprop 96.7 0.04 8.7E-07 50.5 13.2 169 70-251 20-218 (268)
287 COG2070 Dioxygenases related t 96.7 0.032 7E-07 53.1 12.6 131 118-259 80-218 (336)
288 TIGR00284 dihydropteroate synt 96.7 0.091 2E-06 52.6 16.2 182 57-254 151-351 (499)
289 PF00977 His_biosynth: Histidi 96.6 0.0031 6.7E-08 56.6 5.3 80 174-261 28-109 (229)
290 cd04740 DHOD_1B_like Dihydroor 96.6 0.098 2.1E-06 48.4 15.3 137 57-194 89-260 (296)
291 TIGR02090 LEU1_arch isopropylm 96.6 0.11 2.3E-06 50.0 15.9 164 71-251 23-213 (363)
292 cd04742 NPD_FabD 2-Nitropropan 96.6 0.11 2.3E-06 51.0 15.9 149 105-258 55-252 (418)
293 cd02801 DUS_like_FMN Dihydrour 96.6 0.051 1.1E-06 48.0 12.8 137 55-193 52-212 (231)
294 cd04723 HisA_HisF Phosphoribos 96.6 0.0092 2E-07 53.7 8.0 87 175-270 35-123 (233)
295 COG1954 GlpP Glycerol-3-phosph 96.6 0.048 1E-06 47.0 11.7 158 40-251 6-170 (181)
296 TIGR01919 hisA-trpF 1-(5-phosp 96.5 0.0095 2.1E-07 54.1 7.8 36 227-262 75-111 (243)
297 PF04309 G3P_antiterm: Glycero 96.5 0.009 1.9E-07 51.8 7.2 140 62-254 23-169 (175)
298 cd04731 HisF The cyclase subun 96.5 0.009 1.9E-07 53.7 7.4 77 177-261 29-107 (243)
299 PRK07188 nicotinate phosphorib 96.5 0.033 7.1E-07 53.4 11.5 51 210-260 263-316 (352)
300 COG1411 Uncharacterized protei 96.5 0.063 1.4E-06 47.5 12.0 175 68-267 37-223 (229)
301 PRK15108 biotin synthase; Prov 96.4 0.5 1.1E-05 45.1 19.1 197 68-272 77-307 (345)
302 PRK12581 oxaloacetate decarbox 96.4 0.22 4.9E-06 49.5 17.1 172 71-253 36-237 (468)
303 PRK12738 kbaY tagatose-bisphos 96.4 0.18 3.9E-06 47.0 15.6 188 62-259 21-237 (286)
304 PLN02411 12-oxophytodienoate r 96.3 0.072 1.6E-06 51.7 13.1 129 134-267 174-355 (391)
305 PRK07259 dihydroorotate dehydr 96.3 0.11 2.4E-06 48.2 13.8 161 57-224 91-288 (301)
306 PRK04165 acetyl-CoA decarbonyl 96.3 0.19 4E-06 49.8 15.9 182 57-255 91-298 (450)
307 PRK09389 (R)-citramalate synth 96.3 0.16 3.5E-06 50.7 15.6 184 71-272 25-240 (488)
308 PRK12344 putative alpha-isopro 96.3 0.21 4.5E-06 50.4 16.5 188 67-271 24-254 (524)
309 PRK01033 imidazole glycerol ph 96.3 0.015 3.2E-07 53.2 7.5 78 176-261 31-110 (258)
310 COG0106 HisA Phosphoribosylfor 96.3 0.016 3.4E-07 52.6 7.5 77 175-259 31-109 (241)
311 cd00956 Transaldolase_FSA Tran 96.2 0.71 1.5E-05 41.1 17.9 189 67-272 4-207 (211)
312 PRK12999 pyruvate carboxylase; 96.2 0.14 2.9E-06 56.3 15.8 200 62-271 545-787 (1146)
313 PF01207 Dus: Dihydrouridine s 96.2 0.045 9.7E-07 51.4 10.7 151 103-261 40-220 (309)
314 PF01645 Glu_synthase: Conserv 96.2 0.04 8.6E-07 53.1 10.2 121 136-256 170-305 (368)
315 PRK09240 thiH thiamine biosynt 96.2 0.14 2.9E-06 49.4 13.9 182 68-259 105-330 (371)
316 PF00121 TIM: Triosephosphate 96.2 0.019 4.1E-07 52.3 7.5 131 131-264 77-241 (244)
317 cd02931 ER_like_FMN Enoate red 96.1 0.099 2.2E-06 50.5 12.7 124 134-265 159-346 (382)
318 PLN02561 triosephosphate isome 96.1 0.17 3.8E-06 46.3 13.3 128 131-260 81-239 (253)
319 cd02808 GltS_FMN Glutamate syn 96.0 0.087 1.9E-06 51.1 11.9 107 152-258 199-318 (392)
320 TIGR02814 pfaD_fam PfaD family 96.0 0.21 4.6E-06 49.3 14.6 70 188-258 183-257 (444)
321 cd00331 IGPS Indole-3-glycerol 96.0 0.2 4.4E-06 44.1 13.3 137 123-274 29-169 (217)
322 PF00478 IMPDH: IMP dehydrogen 96.0 0.092 2E-06 50.3 11.7 126 115-254 37-177 (352)
323 PRK10605 N-ethylmaleimide redu 96.0 0.14 3E-06 49.2 13.0 122 134-265 168-332 (362)
324 cd04747 OYE_like_5_FMN Old yel 96.0 0.13 2.9E-06 49.4 12.8 124 134-264 153-338 (361)
325 PRK00915 2-isopropylmalate syn 96.0 0.24 5.2E-06 49.8 15.1 185 71-271 27-249 (513)
326 TIGR00167 cbbA ketose-bisphosp 96.0 0.57 1.2E-05 43.8 16.5 186 63-259 22-241 (288)
327 PRK07998 gatY putative fructos 96.0 0.38 8.3E-06 44.8 15.3 180 67-259 26-234 (283)
328 PRK08610 fructose-bisphosphate 95.9 0.65 1.4E-05 43.4 16.7 188 63-259 22-238 (286)
329 TIGR00419 tim triosephosphate 95.9 0.13 2.8E-06 45.7 11.4 125 131-260 74-204 (205)
330 TIGR01858 tag_bisphos_ald clas 95.9 0.38 8.3E-06 44.8 14.9 182 68-259 25-235 (282)
331 COG1902 NemA NADH:flavin oxido 95.8 0.3 6.5E-06 47.1 14.5 198 61-267 73-331 (363)
332 cd02930 DCR_FMN 2,4-dienoyl-Co 95.8 0.093 2E-06 50.0 10.9 126 134-264 146-316 (353)
333 cd00947 TBP_aldolase_IIB Tagat 95.8 0.66 1.4E-05 43.1 16.0 185 66-259 20-231 (276)
334 PRK08662 nicotinate phosphorib 95.8 0.11 2.5E-06 49.5 11.2 100 154-260 186-294 (343)
335 PF03328 HpcH_HpaI: HpcH/HpaI 95.8 0.086 1.9E-06 46.7 9.8 179 73-255 11-213 (221)
336 TIGR01037 pyrD_sub1_fam dihydr 95.7 0.24 5.2E-06 45.9 13.1 157 58-225 91-289 (300)
337 PRK12858 tagatose 1,6-diphosph 95.7 0.62 1.3E-05 44.5 16.0 177 68-260 47-282 (340)
338 COG0107 HisF Imidazoleglycerol 95.7 0.043 9.3E-07 49.6 7.6 79 175-261 30-110 (256)
339 cd02810 DHOD_DHPD_FMN Dihydroo 95.7 0.057 1.2E-06 49.7 8.6 86 57-146 98-197 (289)
340 COG2022 ThiG Uncharacterized e 95.7 0.072 1.6E-06 48.2 8.8 189 68-273 25-230 (262)
341 PRK07565 dihydroorotate dehydr 95.7 0.47 1E-05 44.9 15.0 87 58-147 102-199 (334)
342 PRK09196 fructose-1,6-bisphosp 95.6 0.59 1.3E-05 44.8 15.4 186 67-259 26-282 (347)
343 cd03174 DRE_TIM_metallolyase D 95.6 1.1 2.5E-05 40.1 16.6 141 130-275 24-189 (265)
344 PLN02623 pyruvate kinase 95.6 0.22 4.9E-06 50.6 13.0 140 130-275 283-438 (581)
345 cd00959 DeoC 2-deoxyribose-5-p 95.6 0.44 9.4E-06 41.9 13.4 158 71-251 18-200 (203)
346 PTZ00314 inosine-5'-monophosph 95.6 0.15 3.3E-06 51.0 11.7 120 73-199 243-378 (495)
347 COG3836 HpcH 2,4-dihydroxyhept 95.5 0.46 9.9E-06 43.1 13.4 171 76-256 31-238 (255)
348 cd04734 OYE_like_3_FMN Old yel 95.5 0.2 4.3E-06 47.8 11.7 39 226-264 285-325 (343)
349 cd08556 GDPD Glycerophosphodie 95.5 0.95 2.1E-05 38.1 14.9 159 69-252 12-186 (189)
350 PRK07535 methyltetrahydrofolat 95.4 0.33 7.2E-06 44.6 12.7 176 64-253 19-227 (261)
351 TIGR00742 yjbN tRNA dihydrouri 95.4 0.4 8.7E-06 45.3 13.6 136 55-193 52-222 (318)
352 PRK12737 gatY tagatose-bisphos 95.4 0.78 1.7E-05 42.8 15.2 182 67-259 26-237 (284)
353 PRK06267 hypothetical protein; 95.4 0.72 1.6E-05 44.0 15.4 182 67-260 63-275 (350)
354 PLN02535 glycolate oxidase 95.4 0.17 3.6E-06 48.8 11.0 97 156-259 213-312 (364)
355 PRK15452 putative protease; Pr 95.4 0.094 2E-06 51.8 9.3 117 123-258 9-145 (443)
356 cd00019 AP2Ec AP endonuclease 95.3 0.3 6.5E-06 44.5 12.0 123 66-189 7-166 (279)
357 cd00516 PRTase_typeII Phosphor 95.3 0.22 4.7E-06 45.8 11.1 95 156-260 170-273 (281)
358 PRK12857 fructose-1,6-bisphosp 95.3 0.91 2E-05 42.3 15.0 182 67-259 26-237 (284)
359 TIGR01521 FruBisAldo_II_B fruc 95.3 0.91 2E-05 43.5 15.3 191 62-259 19-280 (347)
360 PRK07709 fructose-bisphosphate 95.3 1.7 3.8E-05 40.5 16.9 188 62-259 21-238 (285)
361 PRK10415 tRNA-dihydrouridine s 95.2 0.56 1.2E-05 44.3 13.8 131 57-193 64-223 (321)
362 PRK05835 fructose-bisphosphate 95.2 0.92 2E-05 42.8 15.1 184 68-259 26-260 (307)
363 PRK10550 tRNA-dihydrouridine s 95.2 0.52 1.1E-05 44.4 13.4 134 57-194 62-224 (312)
364 TIGR00977 LeuA_rel 2-isopropyl 95.2 0.95 2.1E-05 45.7 15.9 164 74-251 27-227 (526)
365 cd02929 TMADH_HD_FMN Trimethyl 95.1 0.4 8.7E-06 46.1 12.7 127 134-265 159-330 (370)
366 cd07944 DRE_TIM_HOA_like 4-hyd 95.1 1.9 4.1E-05 39.6 16.5 155 91-275 6-181 (266)
367 PRK15447 putative protease; Pr 95.1 0.43 9.3E-06 44.6 12.5 113 126-258 16-142 (301)
368 TIGR02708 L_lactate_ox L-lacta 95.1 0.17 3.7E-06 48.8 9.9 110 156-273 218-337 (367)
369 cd08210 RLP_RrRLP Ribulose bis 95.1 1.4 3E-05 42.6 16.1 201 60-273 133-363 (364)
370 TIGR01417 PTS_I_fam phosphoeno 95.1 0.22 4.8E-06 50.7 11.2 121 134-257 379-528 (565)
371 TIGR02317 prpB methylisocitrat 95.0 0.21 4.6E-06 46.5 10.0 181 57-260 13-235 (285)
372 cd03332 LMO_FMN L-Lactate 2-mo 95.0 0.18 3.8E-06 49.0 9.8 96 156-258 243-341 (383)
373 PRK02412 aroD 3-dehydroquinate 95.0 0.58 1.3E-05 42.7 12.7 122 53-177 11-149 (253)
374 TIGR00190 thiC thiamine biosyn 95.0 1.7 3.8E-05 42.3 16.2 189 58-258 61-296 (423)
375 TIGR01302 IMP_dehydrog inosine 95.0 0.24 5.2E-06 48.9 10.9 120 74-200 227-362 (450)
376 PRK06843 inosine 5-monophospha 95.0 0.37 8E-06 47.1 11.9 79 166-254 142-222 (404)
377 TIGR01418 PEP_synth phosphoeno 94.9 0.18 3.9E-06 53.2 10.4 118 136-256 625-768 (782)
378 PRK09195 gatY tagatose-bisphos 94.9 1 2.3E-05 41.9 14.3 183 67-258 26-236 (284)
379 cd04736 MDH_FMN Mandelate dehy 94.8 0.25 5.5E-06 47.5 10.3 108 156-274 226-344 (361)
380 TIGR01306 GMP_reduct_2 guanosi 94.8 0.34 7.3E-06 46.0 10.9 125 116-254 35-165 (321)
381 cd08207 RLP_NonPhot Ribulose b 94.8 0.35 7.5E-06 47.3 11.3 94 19-122 174-267 (406)
382 cd07942 DRE_TIM_LeuA Mycobacte 94.8 1.1 2.4E-05 41.8 14.2 166 74-252 27-239 (284)
383 TIGR03699 mena_SCO4550 menaqui 94.8 0.48 1E-05 44.8 12.0 186 67-261 72-309 (340)
384 PRK05096 guanosine 5'-monophos 94.7 0.5 1.1E-05 45.1 11.8 112 130-254 62-179 (346)
385 TIGR01305 GMP_reduct_1 guanosi 94.7 0.47 1E-05 45.3 11.5 112 130-254 61-178 (343)
386 cd00423 Pterin_binding Pterin 94.7 2.4 5.1E-05 38.6 16.0 100 67-175 21-130 (258)
387 COG5016 Pyruvate/oxaloacetate 94.7 0.4 8.6E-06 46.7 11.1 114 129-251 102-228 (472)
388 COG0042 tRNA-dihydrouridine sy 94.6 0.85 1.8E-05 43.2 13.3 142 115-263 66-237 (323)
389 KOG2335 tRNA-dihydrouridine sy 94.6 0.69 1.5E-05 44.3 12.5 140 115-258 73-237 (358)
390 PLN02979 glycolate oxidase 94.6 0.34 7.3E-06 46.7 10.4 96 156-258 213-311 (366)
391 PLN03228 methylthioalkylmalate 94.6 0.6 1.3E-05 46.9 12.6 169 73-253 109-317 (503)
392 TIGR02351 thiH thiazole biosyn 94.5 0.7 1.5E-05 44.4 12.7 175 68-254 104-318 (366)
393 TIGR03551 F420_cofH 7,8-dideme 94.5 0.82 1.8E-05 43.4 13.0 182 67-259 70-304 (343)
394 COG1856 Uncharacterized homolo 94.5 2.7 5.8E-05 38.1 15.2 180 65-252 37-250 (275)
395 PRK06464 phosphoenolpyruvate s 94.5 0.29 6.3E-06 51.8 10.7 123 131-256 626-775 (795)
396 PRK07084 fructose-bisphosphate 94.4 2 4.3E-05 40.8 15.1 186 68-259 33-273 (321)
397 PRK14566 triosephosphate isome 94.4 0.84 1.8E-05 42.0 12.3 136 131-267 88-254 (260)
398 cd00739 DHPS DHPS subgroup of 94.4 2.5 5.5E-05 38.7 15.5 97 68-173 22-128 (257)
399 PRK13398 3-deoxy-7-phosphohept 94.4 3.8 8.3E-05 37.8 16.6 188 57-258 27-235 (266)
400 cd08208 RLP_Photo Ribulose bis 94.4 0.68 1.5E-05 45.5 12.3 77 37-122 208-284 (424)
401 cd02067 B12-binding B12 bindin 94.3 0.73 1.6E-05 36.5 10.5 89 155-253 17-108 (119)
402 PRK03739 2-isopropylmalate syn 94.3 2.7 5.8E-05 42.8 16.8 198 43-252 27-268 (552)
403 PRK11320 prpB 2-methylisocitra 94.3 0.56 1.2E-05 43.9 11.0 182 55-259 15-239 (292)
404 COG0119 LeuA Isopropylmalate/h 94.2 1.6 3.4E-05 42.8 14.5 166 74-251 28-220 (409)
405 TIGR02026 BchE magnesium-proto 94.2 0.19 4.2E-06 50.1 8.4 131 68-200 223-381 (497)
406 cd00377 ICL_PEPM Members of th 94.2 0.82 1.8E-05 41.4 11.6 166 76-259 22-231 (243)
407 cd02071 MM_CoA_mut_B12_BD meth 94.1 2 4.3E-05 34.5 12.7 98 159-271 21-121 (122)
408 KOG0538 Glycolate oxidase [Ene 94.1 1.8 3.9E-05 40.9 13.7 112 156-273 213-332 (363)
409 TIGR00044 pyridoxal phosphate 94.1 2.6 5.6E-05 37.7 14.7 171 73-259 40-227 (229)
410 cd00453 FTBP_aldolase_II Fruct 94.1 2.7 5.8E-05 40.2 15.2 195 61-258 15-276 (340)
411 TIGR02319 CPEP_Pphonmut carbox 94.1 0.32 7E-06 45.5 9.0 198 53-271 12-252 (294)
412 PF06073 DUF934: Bacterial pro 94.1 0.39 8.4E-06 38.6 8.2 90 169-272 1-91 (110)
413 PF01791 DeoC: DeoC/LacD famil 94.0 0.27 5.9E-06 44.0 8.2 169 71-259 20-235 (236)
414 PF03740 PdxJ: Pyridoxal phosp 94.0 0.84 1.8E-05 41.5 11.2 127 126-258 23-156 (239)
415 PF00724 Oxidored_FMN: NADH:fl 94.0 1.3 2.8E-05 42.1 13.2 129 134-267 158-334 (341)
416 TIGR03471 HpnJ hopanoid biosyn 94.0 0.16 3.4E-06 50.2 7.2 129 68-200 228-381 (472)
417 TIGR02320 PEP_mutase phosphoen 94.0 0.48 1E-05 44.2 9.9 146 105-260 68-246 (285)
418 TIGR00973 leuA_bact 2-isopropy 93.9 2.1 4.6E-05 42.9 15.1 185 73-271 26-246 (494)
419 PRK02261 methylaspartate mutas 93.9 1.8 4E-05 35.8 12.4 104 157-276 23-136 (137)
420 PRK11197 lldD L-lactate dehydr 93.9 0.35 7.6E-06 46.9 9.2 110 156-274 235-355 (381)
421 cd03311 CIMS_C_terminal_like C 93.9 0.57 1.2E-05 44.0 10.5 145 73-219 158-329 (332)
422 PRK05458 guanosine 5'-monophos 93.9 0.7 1.5E-05 43.9 11.0 111 130-254 53-168 (326)
423 PRK13397 3-deoxy-7-phosphohept 93.9 5 0.00011 36.8 16.1 170 74-257 33-222 (250)
424 PRK13307 bifunctional formalde 93.8 1.1 2.4E-05 43.6 12.5 126 60-194 229-358 (391)
425 cd07947 DRE_TIM_Re_CS Clostrid 93.8 1.9 4.1E-05 40.0 13.6 165 74-251 25-232 (279)
426 KOG2550 IMP dehydrogenase/GMP 93.8 0.3 6.5E-06 47.6 8.3 132 73-259 253-388 (503)
427 cd00381 IMPDH IMPDH: The catal 93.8 1.1 2.4E-05 42.4 12.1 112 130-254 50-163 (325)
428 TIGR00734 hisAF_rel hisA/hisF 93.8 0.28 6E-06 43.9 7.7 76 175-261 36-115 (221)
429 TIGR01496 DHPS dihydropteroate 93.7 1.4 3E-05 40.3 12.4 95 68-173 21-126 (257)
430 TIGR01303 IMP_DH_rel_1 IMP deh 93.7 0.75 1.6E-05 45.9 11.2 122 71-200 225-363 (475)
431 PRK05826 pyruvate kinase; Prov 93.6 1 2.2E-05 44.9 12.0 140 130-275 178-334 (465)
432 TIGR00640 acid_CoA_mut_C methy 93.6 1.9 4.1E-05 35.5 11.8 60 210-274 67-127 (132)
433 PRK04452 acetyl-CoA decarbonyl 93.6 1.1 2.3E-05 42.5 11.6 162 80-254 86-297 (319)
434 cd06822 PLPDE_III_YBL036c_euk 93.6 2.4 5.1E-05 38.2 13.4 178 62-259 24-227 (227)
435 TIGR01093 aroD 3-dehydroquinat 93.5 1.1 2.4E-05 40.0 11.2 111 59-173 1-126 (228)
436 cd00408 DHDPS-like Dihydrodipi 93.5 2.6 5.7E-05 38.4 13.9 172 66-256 14-203 (281)
437 cd02911 arch_FMN Archeal FMN-b 93.4 3.2 7E-05 37.4 14.0 132 53-193 68-219 (233)
438 KOG4013 Predicted Cu2+ homeost 93.4 0.31 6.7E-06 43.1 7.0 155 71-245 18-199 (255)
439 PF01116 F_bP_aldolase: Fructo 93.4 2.3 5E-05 39.7 13.3 191 62-259 20-240 (287)
440 COG0854 PdxJ Pyridoxal phospha 93.4 4.8 0.0001 36.3 14.5 190 74-277 26-241 (243)
441 COG0502 BioB Biotin synthase a 93.2 2.3 5.1E-05 40.5 13.3 195 72-272 89-314 (335)
442 PRK11613 folP dihydropteroate 93.2 3.2 7E-05 38.6 14.0 96 68-173 36-141 (282)
443 PLN02493 probable peroxisomal 93.2 0.8 1.7E-05 44.2 10.3 96 156-258 214-312 (367)
444 TIGR03326 rubisco_III ribulose 93.2 1.5 3.4E-05 42.9 12.3 94 19-122 175-271 (412)
445 PRK05904 coproporphyrinogen II 93.1 3.1 6.8E-05 39.8 14.1 130 125-256 96-262 (353)
446 TIGR01235 pyruv_carbox pyruvat 93.0 2.3 4.9E-05 47.0 14.4 183 61-253 542-763 (1143)
447 TIGR00259 thylakoid_BtpA membr 92.9 3.9 8.4E-05 37.6 13.9 157 60-220 82-252 (257)
448 PLN02858 fructose-bisphosphate 92.9 2.4 5.3E-05 47.6 14.8 191 62-259 1117-1336(1378)
449 TIGR00559 pdxJ pyridoxine 5'-p 92.9 1.8 3.9E-05 39.3 11.3 127 126-258 22-155 (237)
450 TIGR00423 radical SAM domain p 92.8 1.8 3.8E-05 40.4 11.9 183 67-258 36-267 (309)
451 PRK05265 pyridoxine 5'-phospha 92.8 1.8 3.9E-05 39.3 11.3 127 126-258 25-158 (239)
452 cd02803 OYE_like_FMN_family Ol 92.8 1 2.2E-05 42.0 10.2 119 74-193 145-310 (327)
453 cd00003 PNPsynthase Pyridoxine 92.8 1.8 4E-05 39.2 11.2 127 126-258 22-155 (234)
454 PRK08255 salicylyl-CoA 5-hydro 92.8 2.2 4.8E-05 44.9 13.7 123 134-263 560-726 (765)
455 PF04476 DUF556: Protein of un 92.6 3.1 6.8E-05 37.7 12.5 132 58-194 53-208 (235)
456 cd04730 NPD_like 2-Nitropropan 92.6 5.9 0.00013 34.9 14.4 121 63-197 59-188 (236)
457 PRK08649 inosine 5-monophospha 92.5 0.85 1.9E-05 44.0 9.5 95 152-255 118-216 (368)
458 TIGR00970 leuA_yeast 2-isoprop 92.5 4.3 9.3E-05 41.4 14.9 172 74-252 52-267 (564)
459 cd07948 DRE_TIM_HCS Saccharomy 92.5 4.9 0.00011 36.9 14.0 141 130-273 27-182 (262)
460 PF13714 PEP_mutase: Phosphoen 92.4 0.32 7E-06 44.1 6.1 180 57-259 9-224 (238)
461 PRK09057 coproporphyrinogen II 92.4 3.6 7.7E-05 39.6 13.6 177 71-254 39-264 (380)
462 PRK10076 pyruvate formate lyas 92.4 1.6 3.5E-05 38.9 10.4 57 137-193 37-95 (213)
463 TIGR01304 IMP_DH_rel_2 IMP deh 92.3 1.3 2.8E-05 42.8 10.4 110 130-256 104-218 (369)
464 PRK14847 hypothetical protein; 92.3 6.1 0.00013 37.7 14.7 193 46-252 32-270 (333)
465 PRK07360 FO synthase subunit 2 92.3 3.1 6.6E-05 40.0 13.0 183 67-259 91-331 (371)
466 cd00946 FBP_aldolase_IIA Class 92.3 11 0.00024 36.2 16.8 190 66-259 23-280 (345)
467 COG2108 Uncharacterized conser 92.3 0.88 1.9E-05 43.2 8.8 88 105-193 98-198 (353)
468 PRK13399 fructose-1,6-bisphosp 92.3 7.9 0.00017 37.2 15.5 186 68-259 27-282 (347)
469 PRK04326 methionine synthase; 92.2 3.7 8E-05 38.5 13.2 89 72-170 163-260 (330)
470 TIGR01769 GGGP geranylgeranylg 92.2 0.51 1.1E-05 41.9 6.9 65 76-144 140-204 (205)
471 PRK07807 inosine 5-monophospha 92.1 0.98 2.1E-05 45.1 9.6 123 71-200 227-365 (479)
472 PRK00507 deoxyribose-phosphate 92.1 8.5 0.00019 34.5 15.9 112 131-251 80-205 (221)
473 PRK13962 bifunctional phosphog 92.1 2.6 5.6E-05 43.7 12.8 137 131-267 474-641 (645)
474 COG0821 gcpE 1-hydroxy-2-methy 92.1 1.5 3.2E-05 41.8 10.1 108 59-175 22-133 (361)
475 PRK13352 thiamine biosynthesis 92.1 5.8 0.00013 38.9 14.3 124 130-258 148-299 (431)
476 COG0422 ThiC Thiamine biosynth 92.1 8.2 0.00018 37.5 15.1 124 130-258 146-297 (432)
477 PF01487 DHquinase_I: Type I 3 92.0 1.9 4.1E-05 38.2 10.5 108 61-173 1-121 (224)
478 cd03316 MR_like Mandelate race 92.0 1.6 3.5E-05 41.2 10.7 119 126-254 139-270 (357)
479 TIGR03550 F420_cofG 7,8-dideme 92.0 6.9 0.00015 36.8 14.8 184 67-258 35-275 (322)
480 cd08205 RuBisCO_IV_RLP Ribulos 91.9 2.7 5.8E-05 40.6 12.1 197 66-272 142-366 (367)
481 PF02310 B12-binding: B12 bind 91.9 3.4 7.3E-05 32.3 10.9 92 154-255 17-112 (121)
482 cd08209 RLP_DK-MTP-1-P-enolase 91.9 2 4.4E-05 41.8 11.3 118 19-146 155-286 (391)
483 PF01070 FMN_dh: FMN-dependent 91.9 1.9 4.1E-05 41.5 10.9 95 157-259 216-314 (356)
484 PRK01261 aroD 3-dehydroquinate 91.9 3.2 7E-05 37.4 11.9 121 53-185 16-138 (229)
485 PRK05628 coproporphyrinogen II 91.8 7.3 0.00016 37.3 14.9 195 71-272 41-296 (375)
486 PRK11858 aksA trans-homoaconit 91.8 10 0.00022 36.6 15.9 142 130-273 31-186 (378)
487 TIGR00612 ispG_gcpE 1-hydroxy- 91.8 2.3 5E-05 40.6 11.0 108 58-174 19-130 (346)
488 cd08148 RuBisCO_large Ribulose 91.8 2.2 4.8E-05 41.2 11.2 80 34-122 172-253 (366)
489 PRK00278 trpC indole-3-glycero 91.8 2.7 5.8E-05 38.5 11.4 122 63-195 113-241 (260)
490 PLN02274 inosine-5'-monophosph 91.7 0.77 1.7E-05 46.1 8.4 114 130-254 187-317 (505)
491 TIGR01334 modD putative molybd 91.6 0.78 1.7E-05 42.6 7.7 85 105-194 177-263 (277)
492 PLN02321 2-isopropylmalate syn 91.6 7.8 0.00017 40.1 15.6 182 74-271 112-340 (632)
493 PRK09197 fructose-bisphosphate 91.6 11 0.00024 36.3 15.6 188 68-258 30-283 (350)
494 COG0107 HisF Imidazoleglycerol 91.5 10 0.00022 34.6 14.2 189 74-279 34-251 (256)
495 TIGR01520 FruBisAldo_II_A fruc 91.5 14 0.0003 35.6 16.5 188 67-259 35-292 (357)
496 COG5016 Pyruvate/oxaloacetate 91.5 0.36 7.8E-06 47.0 5.4 97 74-173 160-263 (472)
497 PTZ00300 pyruvate kinase; Prov 91.4 3.6 7.7E-05 40.9 12.5 139 130-274 152-306 (454)
498 cd02072 Glm_B12_BD B12 binding 91.3 5.7 0.00012 32.7 11.7 96 160-271 22-127 (128)
499 PLN02334 ribulose-phosphate 3- 91.3 7.3 0.00016 34.7 13.5 129 117-257 9-149 (229)
500 TIGR00676 fadh2 5,10-methylene 91.3 9.8 0.00021 34.9 14.7 105 69-175 14-135 (272)
No 1
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-69 Score=476.89 Aligned_cols=217 Identities=57% Similarity=0.904 Sum_probs=209.7
Q ss_pred CCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHH
Q 023494 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 56 ~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~ 135 (281)
.+.+|+|||||+|+.++++++++++++|+||+|+||||||||||++|||.+++++|+.|+.|+||||||.+|.+|++.|+
T Consensus 2 ~~~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa 81 (220)
T COG0036 2 KMMKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFA 81 (220)
T ss_pred CCceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
++|||+||||.|+ .+++.++++.||+.|+|+|+++||.||++.++++++.+|+|++|||+|||+||+|+|++++||++
T Consensus 82 ~agad~It~H~E~--~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~ 159 (220)
T COG0036 82 KAGADIITFHAEA--TEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRE 159 (220)
T ss_pred HhCCCEEEEEecc--CcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHH
Confidence 9999999999995 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+|+++.+++ ++.|+||||||.+|++++.++|||++|+||+||+.+|+++.++.++....
T Consensus 160 lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~~ 218 (220)
T COG0036 160 LRAMIDERL-DILIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYKATIRELRGELL 218 (220)
T ss_pred HHHHhcccC-CeEEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHHHHhh
Confidence 999998766 88999999999999999999999999999999999999999999987654
No 2
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=2.2e-67 Score=469.31 Aligned_cols=217 Identities=49% Similarity=0.807 Sum_probs=209.7
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~ 135 (281)
.++|+|||||+|+.+|+++++++++.|+||+|+|||||+||||++||+++++++|+. ++.++||||||.||++|++.++
T Consensus 3 ~~~i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~ 82 (223)
T PRK08745 3 PTAIAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFA 82 (223)
T ss_pred CcEEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHH
Confidence 457999999999999999999999999999999999999999999999999999998 7999999999999999999999
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
++|||+|+||+|+ ..++.++++.||++|+++|+++||.||++.++++++.+|+|++|||+|||+||+|+|.+++||++
T Consensus 83 ~~gad~I~~H~Ea--~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~ 160 (223)
T PRK08745 83 DAGATTISFHPEA--SRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRA 160 (223)
T ss_pred HhCCCEEEEcccC--cccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHH
Confidence 9999999999996 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+|++++++++++.|+||||||.+|++++.++|||++|+||+||+++||+++++++++.++
T Consensus 161 l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~~ 220 (223)
T PRK08745 161 IRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVA 220 (223)
T ss_pred HHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHHH
Confidence 999999888888999999999999999999999999999999999999999999998764
No 3
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=100.00 E-value=6.7e-66 Score=459.75 Aligned_cols=214 Identities=26% Similarity=0.403 Sum_probs=206.9
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
+..|+|||+|+|+.+|++++++++++|+||+|+|||||+||||++||+.+++++|+ +.|+||||||.||++|++.+++
T Consensus 12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~--~~~~DvHLMv~~P~~~i~~~~~ 89 (228)
T PRK08091 12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT--HCFKDVHLMVRDQFEVAKACVA 89 (228)
T ss_pred CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC--CCCEEEEeccCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999985 6899999999999999999999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCC--cEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGA--KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~--k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
+|||+|+||+|+ ..++.++++.||++|+ ++|+++||+||++.++++++.+|+|++|||+|||+||+|++.+++||+
T Consensus 90 aGad~It~H~Ea--~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~ 167 (228)
T PRK08091 90 AGADIVTLQVEQ--THDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVI 167 (228)
T ss_pred hCCCEEEEcccC--cccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHH
Confidence 999999999996 4678999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
++|++++++++++.|+||||||.+|++++.++|||++|+||+||+++|+++.+++|++.+
T Consensus 168 ~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~l~~~~ 227 (228)
T PRK08091 168 QVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALFSQGELKTTLKEWKSSL 227 (228)
T ss_pred HHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHHHHHhh
Confidence 999999998888999999999999999999999999999999999999999999999865
No 4
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=9.3e-66 Score=459.88 Aligned_cols=217 Identities=34% Similarity=0.664 Sum_probs=206.7
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
.++|+|||||+|+.+|+++++.+++ |+||+|+|||||+||||++||+.++++||+.|++|+|+||||.||++|++.+++
T Consensus 2 ~~~I~pSil~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~ 80 (229)
T PRK09722 2 RMKISPSLMCMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLAD 80 (229)
T ss_pred CceEEeehhhcCHHHHHHHHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHH
Confidence 4579999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+|||+|+||+|+. ..++.++++.||++|+|+|+++||+||++.++++++.+|+|++|||+|||+||+|+|.+++||+++
T Consensus 81 aGad~it~H~Ea~-~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~l 159 (229)
T PRK09722 81 AGADFITLHPETI-NGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAEL 159 (229)
T ss_pred cCCCEEEECccCC-cchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHH
Confidence 9999999999962 357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcc-cccC-CCCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS-AVFG-AKDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGS-aIf~-a~dp~~~~~~l~~~~~ 275 (281)
|++++++++++.|+||||||.+|++++.++|||++|+|| +||+ .+|+.+.++++++.++
T Consensus 160 r~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 160 KALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQIE 220 (229)
T ss_pred HHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHHH
Confidence 999998888899999999999999999999999999995 5998 5789999999988654
No 5
>PRK08005 epimerase; Validated
Probab=100.00 E-value=2.7e-65 Score=451.58 Aligned_cols=208 Identities=31% Similarity=0.460 Sum_probs=199.6
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
++|+|||+|+|+.+|++++++++++|+||+|+|||||+||||++||++++++||+.++.|+|+||||.||++|++.++++
T Consensus 1 ~~i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~ 80 (210)
T PRK08005 1 MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAI 80 (210)
T ss_pred CEEEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|||+||||+|+ ..++.++++.||++|+++|+++||+||++.++++++.+|+|++|+|+|||+||+|+|.+++||+++|
T Consensus 81 gad~It~H~Ea--~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~ 158 (210)
T PRK08005 81 RPGWIFIHAES--VQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSR 158 (210)
T ss_pred CCCEEEEcccC--ccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHH
Confidence 99999999996 4679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
+++++ ..|+||||||.+|+++++++|||++|+||+||+++|+++.+++|.
T Consensus 159 ~~~~~----~~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~~ 208 (210)
T PRK08005 159 EHFPA----AECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFT 208 (210)
T ss_pred Hhccc----CCEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHh
Confidence 99864 359999999999999999999999999999999889988887764
No 6
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=2.8e-65 Score=455.41 Aligned_cols=216 Identities=49% Similarity=0.817 Sum_probs=208.9
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.|+|||||+|+.+|+++++++++.|+||+|+|||||+||||++||+++++++|+. ++.++||||||.||++|++.++++
T Consensus 1 ~i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~ 80 (220)
T PRK08883 1 LIAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKA 80 (220)
T ss_pred CcchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999999999999999998 799999999999999999999999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|||+|+||+|+ ..++.++++.||++|+++|+++||+||++.++++++.+|+|++|||+|||+||+|+|.+++||++++
T Consensus 81 gad~i~~H~Ea--~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~ 158 (220)
T PRK08883 81 GASMITFHVEA--SEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVR 158 (220)
T ss_pred CCCEEEEcccC--cccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHH
Confidence 99999999996 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+++++++++++|+||||||++|++.+.++|||++|+||+||+++|++++++++++.+++
T Consensus 159 ~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~~~ 217 (220)
T PRK08883 159 KMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAELAK 217 (220)
T ss_pred HHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence 99988888899999999999999999999999999999999999999999999987654
No 7
>PRK14057 epimerase; Provisional
Probab=100.00 E-value=7.9e-65 Score=457.98 Aligned_cols=215 Identities=28% Similarity=0.465 Sum_probs=206.8
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
.+.|+|||||+|+.+|+++++++++.|+||+|+|||||+||||++||++++++||+ +.|+|+||||.||++|++.|++
T Consensus 19 ~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~--~~p~DvHLMV~~P~~~i~~~~~ 96 (254)
T PRK14057 19 SYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ--TFIKDVHLMVADQWTAAQACVK 96 (254)
T ss_pred CCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc--CCCeeEEeeeCCHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999987 5899999999999999999999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCC---------cEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccch
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGA---------KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~---------k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+|||+|+||+|+ ..++.++++.||++|+ ++|+++||+||++.++++++.+|+|++|||+|||+||+|+|
T Consensus 97 aGad~It~H~Ea--~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~ 174 (254)
T PRK14057 97 AGAHCITLQAEG--DIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSS 174 (254)
T ss_pred hCCCEEEEeecc--ccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccH
Confidence 999999999996 4789999999999997 59999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++++||+++|++++++++++.|+||||||.+|++++.++|||++|+||+||+.+|+++.+++|++.+.
T Consensus 175 ~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~l~~~~~ 242 (254)
T PRK14057 175 DLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWRAMFK 242 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHHHHHh
Confidence 99999999999999988889999999999999999999999999999999998899999999997654
No 8
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-64 Score=431.38 Aligned_cols=217 Identities=47% Similarity=0.730 Sum_probs=206.2
Q ss_pred CCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCC--CeeEEEEecChhhHHHH
Q 023494 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL--PLDVHLMIVEPEQRVPD 133 (281)
Q Consensus 56 ~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~--~idaHLmv~dp~~~i~~ 133 (281)
.+.+|+||||++|+.||+++.++++++|+||||+||||||||||++||+.+|+.||++++. +||+||||.+|++|++.
T Consensus 3 ~~~~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~ 82 (224)
T KOG3111|consen 3 VKPKIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQ 82 (224)
T ss_pred cCceechhhhccchHHHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999998766 59999999999999999
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHH
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
++++||+.+|||+|+ ++.+.++++.||+.|+++|++|+|.||++.++++++.+|++|+|||+|||+||+|.++++.|+
T Consensus 83 ~a~agas~~tfH~E~--~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV 160 (224)
T KOG3111|consen 83 MAKAGASLFTFHYEA--TQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKV 160 (224)
T ss_pred HHhcCcceEEEEEee--ccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHH
Confidence 999999999999996 577999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCcCc
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQA 278 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~~~ 278 (281)
+++|+..+ +..|+||||++++|+..+.+||||.+|+||++|++.||.+.++.||+....+.
T Consensus 161 ~~lR~kyp----~l~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~a~ 221 (224)
T KOG3111|consen 161 EWLREKYP----NLDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEKAA 221 (224)
T ss_pred HHHHHhCC----CceEEecCCcCcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhhhh
Confidence 99996654 57899999999999999999999999999999999999999999999776543
No 9
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=100.00 E-value=6.5e-64 Score=440.83 Aligned_cols=201 Identities=51% Similarity=0.884 Sum_probs=184.2
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
+|+|||+|+|+.+|++++++++++|+||+|+|||||+||||++||++.+++||+.+++|+|+||||.||.+|++.+.++|
T Consensus 1 kI~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g 80 (201)
T PF00834_consen 1 KISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAG 80 (201)
T ss_dssp EEEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT
T ss_pred CeehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~ 218 (281)
+|+|+||.|+ ..++.++++.+|++|+++|+++||.||++.++++++.+|+|++|+|+|||+||+|+|++++||+++++
T Consensus 81 ~~~i~~H~E~--~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~ 158 (201)
T PF00834_consen 81 ADYITFHAEA--TEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRK 158 (201)
T ss_dssp -SEEEEEGGG--TTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHH
T ss_pred CCEEEEcccc--hhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHH
Confidence 9999999995 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 219 MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
+++++|+++.|+||||||.+|++.+.++|||++|+||+||+++
T Consensus 159 ~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~~~ 201 (201)
T PF00834_consen 159 LIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGSAIFKAD 201 (201)
T ss_dssp HHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESHHHHTS-
T ss_pred HHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCCC
Confidence 9999999999999999999999999999999999999999863
No 10
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=100.00 E-value=2.8e-57 Score=406.04 Aligned_cols=214 Identities=43% Similarity=0.724 Sum_probs=202.6
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~ 135 (281)
+.+|+|||+|+|+.+|+++++.+++.|+|++|+|||||+||||++||++++++||+.+ ++++|+|||++||++|++.++
T Consensus 6 ~~~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~ 85 (228)
T PTZ00170 6 KAIIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFA 85 (228)
T ss_pred CCEEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999999999985 899999999999999999999
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh--ccCCEEEEEeecCCCCCCccchhHHHHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL--DVVDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l--~~vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
++|||++|||+|+. ..++.++++.+|++|+++|++++|.|+++.+++++ +.+|+|++|+++||++||+|.+.+++||
T Consensus 86 ~~Gad~itvH~ea~-~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki 164 (228)
T PTZ00170 86 KAGASQFTFHIEAT-EDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKV 164 (228)
T ss_pred HcCCCEEEEeccCC-chHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHH
Confidence 99999999999973 33489999999999999999999999999999999 7899999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+++++++++ +.|+|||||+++|++.++++|||++|+||+||+++||+++++++++.++
T Consensus 165 ~~~~~~~~~----~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~ 222 (228)
T PTZ00170 165 RELRKRYPH----LNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQ 222 (228)
T ss_pred HHHHHhccc----CeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHH
Confidence 999998653 6799999999999999999999999999999999999999999998765
No 11
>PLN02334 ribulose-phosphate 3-epimerase
Probab=100.00 E-value=1.2e-50 Score=362.93 Aligned_cols=226 Identities=63% Similarity=0.953 Sum_probs=213.6
Q ss_pred ccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhH
Q 023494 51 DKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQR 130 (281)
Q Consensus 51 ~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~ 130 (281)
|+|++..+.|+||++|+|+.++.++++.++++|++|+|+|+|||+|+||++||++.+++||+.++.++++||||+||.+|
T Consensus 1 ~~~~~~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~ 80 (229)
T PLN02334 1 DKFSKNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDY 80 (229)
T ss_pred CCcccCCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHH
Confidence 67899899999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHcCCCEEEEccc-ccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc--CCEEEEEeecCCCCCCccch
Q 023494 131 VPDFIKAGADIVSVHCE-QSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV--VDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~E-a~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~--vD~IlvmsV~pG~~GQ~f~~ 207 (281)
++.+.++|||+|+||.| +. .+++.+.++.+++.|+++|++++|+|+.+.++++++. +|||++|+++||+++|+|.+
T Consensus 81 ~~~~~~~gad~v~vH~~q~~-~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~ 159 (229)
T PLN02334 81 VPDFAKAGASIFTFHIEQAS-TIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIP 159 (229)
T ss_pred HHHHHHcCCCEEEEeecccc-chhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCH
Confidence 99999999999999999 22 4678899999999999999999999999999999998 99999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCcCccCC
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~~~~~~ 281 (281)
..+++|+++++++.+ .+|+|||||+++|++++.++|||++|+||+||+++||++++++|++.++++.||+
T Consensus 160 ~~~~~i~~~~~~~~~----~~I~a~GGI~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~~~~~~ 229 (229)
T PLN02334 160 SMMDKVRALRKKYPE----LDIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEKAAVAV 229 (229)
T ss_pred HHHHHHHHHHHhCCC----CcEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHhhccC
Confidence 999999999987542 5899999999999999999999999999999999999999999999998888774
No 12
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=100.00 E-value=1.7e-41 Score=300.01 Aligned_cols=216 Identities=61% Similarity=0.992 Sum_probs=199.3
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
.++|+|||++.|+.++.++++.+.+.|++++|+|+|||.|+||++++++.++++++.++.++++|||++||.++++.+.+
T Consensus 3 ~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~ 82 (220)
T PRK05581 3 MVLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAK 82 (220)
T ss_pred CcEEEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHH
Confidence 34699999999999999999999999999999999999999999999999999998755789999999999999999999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+|+|++++|.+. .++..+.++.+++.|+++|++++|+|+.+.++++...+|||++|+++||.+||.|.+..+++++++
T Consensus 83 ~g~d~v~vh~~~--~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~ 160 (220)
T PRK05581 83 AGADIITFHVEA--SEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIREL 160 (220)
T ss_pred cCCCEEEEeecc--chhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHH
Confidence 999999999995 467888999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
++..+.++.++.|++||||+++|++++.++|+|++|+||+||+++||.++++++++.+
T Consensus 161 ~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~~ 218 (220)
T PRK05581 161 RKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAEL 218 (220)
T ss_pred HHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHh
Confidence 9887653333568899999999999999999999999999999999999999998753
No 13
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=100.00 E-value=9.5e-42 Score=298.98 Aligned_cols=210 Identities=62% Similarity=1.007 Sum_probs=196.6
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
|+|||+|+|+.++.++++.+.+.|+|+||+|+|||+|+||++++++.+++||+.++.++++|+|++++.+|++.+.++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~ga 80 (210)
T TIGR01163 1 IAPSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGA 80 (210)
T ss_pred CcchhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999999999999999999998777889999999999999999999999
Q ss_pred CEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHH
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l 219 (281)
|++++|.+. .++..+.++.+|+.|+++++.++++|+.+.++++...+|+|++|+++||.+||.|.+..++++++++++
T Consensus 81 dgv~vh~~~--~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~ 158 (210)
T TIGR01163 81 DIITVHPEA--SEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKM 158 (210)
T ss_pred CEEEEccCC--chhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHH
Confidence 999999985 456788999999999999999999999999999988899999999999999999999999999999998
Q ss_pred hhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 220 CLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 220 ~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
.++.+.++++.++||||++|++++++.|||++|+||+||+++||++++++++
T Consensus 159 ~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~~~~d~~~~~~~~~ 210 (210)
T TIGR01163 159 IDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIFGADDYKEVIRSLR 210 (210)
T ss_pred HHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHhC
Confidence 8765555789999999999999999999999999999999999999988763
No 14
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=100.00 E-value=1.7e-39 Score=284.27 Aligned_cols=211 Identities=60% Similarity=0.946 Sum_probs=196.8
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
+|+|||+|+|+.++.++++.+.++|++++|+|++||.|.|+..+|++.+++|++.++.++++|||++||.++++.+.++|
T Consensus 1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g 80 (211)
T cd00429 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAG 80 (211)
T ss_pred CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcC
Confidence 48999999999999999999999999999999999999999999999999999866788999999999999999999999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~ 218 (281)
+|++++|.+. .++..+.++.++++|+++|+.++++|+.+.++++...+||+++++++||.+|+.+.+..+++++++++
T Consensus 81 ~dgv~vh~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~ 158 (211)
T cd00429 81 ADIITFHAEA--TDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRE 158 (211)
T ss_pred CCEEEECccc--hhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHH
Confidence 9999999985 46678899999999999999999989988888888889999999999999999999999999999999
Q ss_pred HhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 219 MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
+..+++.+.++.++|||+++|++++.++|||++|+||+||+++||.+++++++
T Consensus 159 ~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai~~~~~~~~~~~~~~ 211 (211)
T cd00429 159 LIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYAEAIKELR 211 (211)
T ss_pred HHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHhC
Confidence 98766666899999999999999999999999999999999999999988763
No 15
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=100.00 E-value=8.7e-33 Score=263.96 Aligned_cols=197 Identities=21% Similarity=0.301 Sum_probs=173.6
Q ss_pred EeccCccCHHHHHHHHHHcC---CCeEEEEeeeCcccccc-cCCHHHHHHcCcC-CCCCeeEEEEecChhhH-HHHHHHc
Q 023494 64 ILSANFAKLGEQVKAVELAG---CDWIHVDVMDGRFVPNI-TIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKA 137 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G---~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~-i~~~~~a 137 (281)
++|+|..+++++++.+.+.+ .+|+.+ | .|.+ .||++++++||+. +++++++|||+.||++| ++.++++
T Consensus 176 ~vALD~~~~~~A~~i~~~l~~~~~~~iKv----G--~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~a 249 (391)
T PRK13307 176 QVALDLPDLEEVERVLSQLPKSDHIIIEA----G--TPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADA 249 (391)
T ss_pred EEecCCCCHHHHHHHHHhcccccceEEEE----C--HHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhc
Confidence 57789999999999888764 344555 5 3655 9999999999997 88999999999999999 7889999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEE-EECCCCCHHHHHHhhccCCEEEEEe-ecCCCCCCccchhHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLDVVDLVLIMS-VNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl-ai~p~t~ie~~~~~l~~vD~Ilvms-V~pG~~GQ~f~~~~l~kI~~ 215 (281)
|||++|||+|+ ...++.++++.+|++|+++|+ ++||.|+.+.++++...+|+|++|+ ++|| +| +..+++|++
T Consensus 250 GAD~vTVH~ea-~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~--~~---~~~~~kI~~ 323 (391)
T PRK13307 250 TADAVVISGLA-PISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEE--GT---EHAWGNIKE 323 (391)
T ss_pred CCCEEEEeccC-CHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCC--cc---cchHHHHHH
Confidence 99999999997 356799999999999999999 9999999999999988899999997 8888 33 336678888
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+|++ +.+++|+|||||+.+++++++++|||++|+||+||+++||+++++++++.+++
T Consensus 324 ikk~----~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i~~ 380 (391)
T PRK13307 324 IKKA----GGKILVAVAGGVRVENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKLKP 380 (391)
T ss_pred HHHh----CCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhhcc
Confidence 8877 34578999999999999999999999999999999999999999999998754
No 16
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=100.00 E-value=1.1e-32 Score=245.21 Aligned_cols=203 Identities=18% Similarity=0.229 Sum_probs=177.1
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcC-CCCCeeEEEEecChhhHHH-HHHHcC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVP-DFIKAG 138 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~-~~~~aG 138 (281)
+-++|+|+.+++++++.+++.+ +. +|+..-+ .|.+ ++|+..++.||+. +++++++|||+.|+.+++. .++++|
T Consensus 5 ~l~vALD~~~~~~a~~l~~~l~-~~--v~~~kvG-~~l~~~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~G 80 (216)
T PRK13306 5 LLQIALDNQDLESAIEDAKKVA-EE--VDIIEVG-TILLLAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAG 80 (216)
T ss_pred cEEEEecCCCHHHHHHHHHHcc-cc--CCEEEEC-hHHHHHhCHHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCC
Confidence 4578889999999998887652 22 3444423 3554 9999999999997 7899999999999999976 788999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+|++|+|+++ ..+++.++++.+++.|+++|++++|.++.+.++++++ ..|+++.|+++||++||.|.|+.+++|+++
T Consensus 81 ad~vTvH~~a-~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~ 159 (216)
T PRK13306 81 ADWVTVICAA-HIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKL 159 (216)
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHH
Confidence 9999999997 3667999999999999999999999999999987776 478999999999999999999999999888
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++ .++.|+|||||++++++.+.++|||++|+||+||+++||.++++++++.++
T Consensus 160 ~~------~~~~i~V~gGI~~~~~~~~~~~~ad~~VvGr~I~~a~dp~~a~~~i~~~i~ 212 (216)
T PRK13306 160 SD------MGFKVSVTGGLVVEDLKLFKGIPVKTFIAGRAIRGAADPAAAARAFKDEIA 212 (216)
T ss_pred hc------CCCeEEEcCCCCHhhHHHHhcCCCCEEEECCcccCCCCHHHHHHHHHHHHH
Confidence 65 145699999999999999999999999999999999999999999998764
No 17
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=100.00 E-value=4.5e-32 Score=245.08 Aligned_cols=190 Identities=22% Similarity=0.273 Sum_probs=172.4
Q ss_pred EeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccccc-----------CCHHHHHHcCcCCCCCeeE
Q 023494 60 VSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPNIT-----------IGPLVVDALRPVTDLPLDV 120 (281)
Q Consensus 60 i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn~~-----------~G~~~I~~ir~~t~~~ida 120 (281)
+.|-+.+.|+. ++.+.++.++++|+|++|+| +|||+|++|.+ ++++.++++|+.++.| +
T Consensus 2 li~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p--v 79 (242)
T cd04724 2 LIPYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIP--I 79 (242)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC--E
Confidence 56788889875 78888999999999999999 99999999866 8999999999876677 6
Q ss_pred EEEec-Ch------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEE
Q 023494 121 HLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVL 192 (281)
Q Consensus 121 HLmv~-dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Il 192 (281)
|||+. || ++|++.+.++|+|++++|.+ +.++..++++.+|++|++.++.++|+|+.++++++++ ..|+|+
T Consensus 80 ~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl--~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy 157 (242)
T cd04724 80 VLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDL--PPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIY 157 (242)
T ss_pred EEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCC--CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEE
Confidence 89998 98 78999999999999999766 3467889999999999999999999999999999998 799999
Q ss_pred EEeecCCCCCCc-cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 193 IMSVNPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 193 vmsV~pG~~GQ~-f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+|++.||+++|. |.+...++|+++|+.. +.+|.|||||+ .++++.+.++ ||++|+||+||+
T Consensus 158 ~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-----~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 158 YVSRTGVTGARTELPDDLKELIKRIRKYT-----DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred EEeCCCCCCCccCCChhHHHHHHHHHhcC-----CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 999999999988 8898999999999863 47999999999 6699999999 999999999986
No 18
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=99.97 E-value=4.5e-32 Score=240.04 Aligned_cols=203 Identities=22% Similarity=0.281 Sum_probs=171.5
Q ss_pred EeccCccCHHHHHHHHHHcCCCeEEEEeeeCccccc-ccCCHHHHHHcCcCCCCCeeEEEE-ec-ChhhHHHHHHHcCCC
Q 023494 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN-ITIGPLVVDALRPVTDLPLDVHLM-IV-EPEQRVPDFIKAGAD 140 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn-~~~G~~~I~~ir~~t~~~idaHLm-v~-dp~~~i~~~~~aGAd 140 (281)
++|+|+.++++.++.+++.+ +. +|+..-++ |. .+||+++++.||+.+++++|+|+| +. ++..+++.++++|||
T Consensus 7 ~~alD~~~~~~~~~~~~~~~-~~--~~~vk~g~-~l~~~~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad 82 (215)
T PRK13813 7 ILALDVTDRERALKIAEELD-DY--VDAIKVGW-PLVLASGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAW 82 (215)
T ss_pred EEEeCCCCHHHHHHHHHhcc-cc--CCEEEEcH-HHHHhhCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCC
Confidence 47889999999999998773 42 35555343 44 489999999999988889999997 54 555566899999999
Q ss_pred EEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHh
Q 023494 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMC 220 (281)
Q Consensus 141 ~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~ 220 (281)
+++||+|+. .+++.++++.++++|+++|++++|.+ .+.++.+.+.+|.++.|+++||++||+|.+..+++|+++++..
T Consensus 83 ~vtvh~e~g-~~~l~~~i~~~~~~g~~~~v~~~~~~-~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~ 160 (215)
T PRK13813 83 GIIVHGFTG-RDSLKAVVEAAAESGGKVFVVVEMSH-PGALEFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRL 160 (215)
T ss_pred EEEEcCcCC-HHHHHHHHHHHHhcCCeEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhc
Confidence 999999973 45688999999999999999999976 4445555667888899999999999999998899999998887
Q ss_pred hhcCCCCeEEEecCCChhc--HHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 221 LEKGVNPWIEVDGGVGPKN--AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 221 ~~~~~~~~I~VDGGI~~e~--i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+. ++.+ |||||++++ ++.+.++|||++|+||+||+++||.+.++++++.+++
T Consensus 161 ~~---~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~~~ 214 (215)
T PRK13813 161 GD---ELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINEEIRG 214 (215)
T ss_pred CC---CcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHHHHhc
Confidence 53 4667 999999985 9999999999999999999999999999999988764
No 19
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.97 E-value=1.2e-29 Score=222.69 Aligned_cols=197 Identities=20% Similarity=0.266 Sum_probs=169.1
Q ss_pred EeccCccCHHHHHHHHHHc--CCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhH-HHHHHHcCC
Q 023494 64 ILSANFAKLGEQVKAVELA--GCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGA 139 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~--G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~-i~~~~~aGA 139 (281)
++|+|..++++.++.++.. |++++++ ++.-+..+|++.++.||+. ++..+.+|+|+.||+.+ ++.+.++||
T Consensus 3 ~~alD~~~~~~a~~~~~~l~~~v~~iev-----~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Ga 77 (206)
T TIGR03128 3 QLALDLLDIEEALELAEKVADYVDIIEI-----GTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGA 77 (206)
T ss_pred EEEecCCCHHHHHHHHHHcccCeeEEEe-----CCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCC
Confidence 5688999999888766644 4444443 3333458899999999986 67789999999999998 899999999
Q ss_pred CEEEEcccccccccHHHHHHHHHHcCCcEEEEE-CCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|+|++|+++ +..++.++++.++++|+++++.+ +|.|+.+.++++.+ .+|+| +++||+++|.|.+..+++|++++
T Consensus 78 d~i~vh~~~-~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v---~~~pg~~~~~~~~~~~~~i~~l~ 153 (206)
T TIGR03128 78 DIVTVLGVA-DDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYI---GVHTGLDEQAKGQNPFEDLQTIL 153 (206)
T ss_pred CEEEEeccC-CHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEE---EEcCCcCcccCCCCCHHHHHHHH
Confidence 999999996 24467899999999999999985 99999988888777 69988 55899999999988899999999
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+.++. +.|+|+|||+++|++++.++|||.+++||+||+++||.+.++++++.
T Consensus 154 ~~~~~----~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 154 KLVKE----ARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred HhcCC----CcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 88753 67999999999999999999999999999999999999999999875
No 20
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.96 E-value=3.1e-28 Score=220.20 Aligned_cols=203 Identities=19% Similarity=0.241 Sum_probs=166.0
Q ss_pred ceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEEe------eeCcccccc-------cCCHHHHHHcCcCCCCCeeEEE
Q 023494 58 IIVSPSILSANFA--KLGEQVKAVELAGCDWIHVDV------MDGRFVPNI-------TIGPLVVDALRPVTDLPLDVHL 122 (281)
Q Consensus 58 ~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiDI------mDG~fvpn~-------~~G~~~I~~ir~~t~~~idaHL 122 (281)
..+.|-+.++|+. +..+.++.+.++ +|.+++.+ .||.-+..- .+ ++.++++|+.+++|+ ||
T Consensus 4 ~~~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~-~~~v~~vr~~~~~Pl--~l 79 (244)
T PRK13125 4 PGLVVYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDI-WPLLEEVRKDVSVPI--IL 79 (244)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCc-HHHHHHHhccCCCCE--EE
Confidence 3588999999874 566777778777 99999963 344211110 11 358888988778887 67
Q ss_pred E------ecChhhHHHHHHHcCCCEEEEc---ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEE
Q 023494 123 M------IVEPEQRVPDFIKAGADIVSVH---CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 193 (281)
Q Consensus 123 m------v~dp~~~i~~~~~aGAd~Itvh---~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilv 193 (281)
| +.+|.+|++.+.++|+|++++| .|+ .+++.++++.++++|+++|++++|.|+.++++++++..|.+++
T Consensus 80 M~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~--~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~ 157 (244)
T PRK13125 80 MTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDY--PDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIY 157 (244)
T ss_pred EEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCc--HHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 7 6799999999999999999999 553 4678899999999999999999999999999999999999999
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccC---CCCHHHHHHH
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFG---AKDYAEAIKG 269 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~---a~dp~~~~~~ 269 (281)
|+++||++ |+|.+...++++++|++.++ .+|+||||| |+++++.++++|||++|+||+||+ .++.++..+.
T Consensus 158 msv~~~~g-~~~~~~~~~~i~~lr~~~~~----~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~ 232 (244)
T PRK13125 158 YGLRPATG-VPLPVSVERNIKRVRNLVGN----KYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEELEKNGVESALNL 232 (244)
T ss_pred EEeCCCCC-CCchHHHHHHHHHHHHhcCC----CCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHH
Confidence 99999995 58999999999999998753 369999999 899999999999999999999996 3444444444
Q ss_pred HH
Q 023494 270 IK 271 (281)
Q Consensus 270 l~ 271 (281)
++
T Consensus 233 ~~ 234 (244)
T PRK13125 233 LK 234 (244)
T ss_pred HH
Confidence 33
No 21
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.96 E-value=1.4e-28 Score=224.11 Aligned_cols=209 Identities=17% Similarity=0.210 Sum_probs=176.0
Q ss_pred CceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcCcC-CCC
Q 023494 57 DIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALRPV-TDL 116 (281)
Q Consensus 57 ~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir~~-t~~ 116 (281)
+..+.|-+.+.|+. ...+.++.+.++|+|+|++. +.||..+.. +.-..+.++++|+. ++.
T Consensus 9 ~~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~ 88 (256)
T TIGR00262 9 EGAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI 88 (256)
T ss_pred CceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 45699999999874 44566788889999999997 466633311 12245668899876 788
Q ss_pred CeeEEEEecCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCC-
Q 023494 117 PLDVHLMIVEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVD- 189 (281)
Q Consensus 117 ~idaHLmv~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD- 189 (281)
|++ |||..|| ++|++.+.++|+|++++|.+. .++..++++.+|++|++.+++++|+|+.++++++....+
T Consensus 89 plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp--~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~g 165 (256)
T TIGR00262 89 PIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLP--LEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQG 165 (256)
T ss_pred CEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCC--hHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCC
Confidence 988 9999999 789999999999999999994 678999999999999999999999999999999999887
Q ss_pred EEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-----C
Q 023494 190 LVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-----K 261 (281)
Q Consensus 190 ~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-----~ 261 (281)
+|++|+++ |++||+ |.+...++|+++|+..+ .+|.|+|||+ +++++.+.++|||++|+||+|++. .
T Consensus 166 fiy~vs~~-G~TG~~~~~~~~~~~~i~~lr~~~~-----~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~~~~~ 239 (256)
T TIGR00262 166 FVYLVSRA-GVTGARNRAASALNELVKRLKAYSA-----KPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIEENLN 239 (256)
T ss_pred CEEEEECC-CCCCCcccCChhHHHHHHHHHhhcC-----CCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhccC
Confidence 99999997 999986 88999999999998753 4799999998 999999999999999999999962 2
Q ss_pred CHHHHHHHHHHhc
Q 023494 262 DYAEAIKGIKTSK 274 (281)
Q Consensus 262 dp~~~~~~l~~~~ 274 (281)
++++..+.+++.+
T Consensus 240 ~~~~~~~~i~~~~ 252 (256)
T TIGR00262 240 TPEKMLQALEEFV 252 (256)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666544
No 22
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.96 E-value=8.9e-28 Score=209.67 Aligned_cols=192 Identities=22% Similarity=0.276 Sum_probs=155.1
Q ss_pred EeccCccCHHHHHHHHHHc--CCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhH-HHHHHHcCC
Q 023494 64 ILSANFAKLGEQVKAVELA--GCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGA 139 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~--G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~-i~~~~~aGA 139 (281)
++|+|..++++.++.++.. +++++++ ++.-...+|++.++.+|+. ++.++++|+|+.||.++ ++.+.++||
T Consensus 4 ~~a~d~~~~~~~~~~~~~l~~~i~~iei-----g~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGa 78 (202)
T cd04726 4 QVALDLLDLEEALELAKKVPDGVDIIEA-----GTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGA 78 (202)
T ss_pred EEEEcCCCHHHHHHHHHHhhhcCCEEEc-----CCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCC
Confidence 5677998888777665543 1555544 3222358899999999986 78999999999999876 688999999
Q ss_pred CEEEEcccccccccHHHHHHHHHHcCCcEEEE-ECCCCCHHHHHHhhccCCEEEEEeecCCCCCCcc-chhHHHHHHHHH
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSF-IESQVKKISDLR 217 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla-i~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f-~~~~l~kI~~lr 217 (281)
|++++|.++. ..++.++++.++++|++++++ ++|.|+.+..+.+...+|+|.+ +|++.++.+ .+...+++++++
T Consensus 79 d~i~~h~~~~-~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~---~~~~~~~~~~~~~~~~~i~~~~ 154 (202)
T cd04726 79 DIVTVLGAAP-LSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVIL---HRGIDAQAAGGWWPEDDLKKVK 154 (202)
T ss_pred CEEEEEeeCC-HHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEE---cCcccccccCCCCCHHHHHHHH
Confidence 9999999963 346788999999999999996 9999999888744447999876 455554444 456677888877
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHH
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 269 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~ 269 (281)
+. .+++|.++|||+++|++++.++|||++|+||+||+++||.+.+++
T Consensus 155 ~~-----~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~~ 201 (202)
T cd04726 155 KL-----LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAARE 201 (202)
T ss_pred hh-----cCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhcCCCCHHHHHhc
Confidence 65 247899999999999999999999999999999999999888764
No 23
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.5e-26 Score=201.63 Aligned_cols=201 Identities=24% Similarity=0.332 Sum_probs=164.3
Q ss_pred eccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcC-CCCCeeEEEEecChhhH-HHHHHHcCCCE
Q 023494 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADI 141 (281)
Q Consensus 65 la~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~-i~~~~~aGAd~ 141 (281)
+|+|+.+|+++++.+.+. .++ +||.+-+ +|.+ .+|++.|+.||+. |+.++.+|+++.|.+.+ .++++++|||+
T Consensus 8 vALD~~~l~~Ai~~a~~v-~~~--~diiEvG-TpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~ 83 (217)
T COG0269 8 VALDLLDLEEAIEIAEEV-ADY--VDIIEVG-TPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADW 83 (217)
T ss_pred eeecccCHHHHHHHHHHh-hhc--ceEEEeC-cHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCE
Confidence 578999999999999987 555 5777744 4655 9999999999996 89999999999999987 67889999999
Q ss_pred EEEcccccccccHHHHHHHHHHcCCcEEEEE-CCCCCHHHHHHhh-ccCCEEEEEe-ecCCCCCCccchhHHHHHHHHHH
Q 023494 142 VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVL-DVVDLVLIMS-VNPGFGGQSFIESQVKKISDLRR 218 (281)
Q Consensus 142 Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-~p~t~ie~~~~~l-~~vD~Ilvms-V~pG~~GQ~f~~~~l~kI~~lr~ 218 (281)
+|+.+-+ +..|+..+++.++++|+.+.+.+ +..++.+..+.+- -.+|++.++. .+.-..|+.|-...+++++++.+
T Consensus 84 ~tV~g~A-~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~ 162 (217)
T COG0269 84 VTVLGAA-DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSD 162 (217)
T ss_pred EEEEecC-CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhc
Confidence 9999998 58899999999999999999965 4445555555544 3589987742 12222355554455666665554
Q ss_pred HhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 219 MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+ ++.++|.|||++++++.+...|+++||+||+|+++.||.++++++++.++.
T Consensus 163 ~------g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~~ 214 (217)
T COG0269 163 L------GAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEIDK 214 (217)
T ss_pred c------CceEEEecCCCHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHhc
Confidence 3 368999999999999999999999999999999999999999999998754
No 24
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.92 E-value=8.1e-24 Score=193.39 Aligned_cols=206 Identities=15% Similarity=0.205 Sum_probs=164.1
Q ss_pred CceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcCcCCCCC
Q 023494 57 DIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALRPVTDLP 117 (281)
Q Consensus 57 ~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir~~t~~~ 117 (281)
+..+.|-+.+.|+. ...+.++.+.++|+|.|++. +.||..+.. +.-..+.++++|+..+.|
T Consensus 14 ~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p 93 (263)
T CHL00200 14 QCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 45699999999874 45567788889999999997 678844332 113467788888766778
Q ss_pred eeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCC-
Q 023494 118 LDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVD- 189 (281)
Q Consensus 118 idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD- 189 (281)
+. ||+ .|| ++|++.+.++|+|++++|.+ +.++..++++.++++|+..+..++|+|+.++++.+....+
T Consensus 94 ~v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL--P~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~g 169 (263)
T CHL00200 94 IV--IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDL--PYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPG 169 (263)
T ss_pred EE--EEecccHHHHhCHHHHHHHHHHcCCeEEEecCC--CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCC
Confidence 75 788 477 46889999999999999999 4688999999999999999999999999999999999887
Q ss_pred EEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccc---cCCCCH
Q 023494 190 LVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAV---FGAKDY 263 (281)
Q Consensus 190 ~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaI---f~a~dp 263 (281)
+|++|+ .+|++||+ +.+...+.++++|+. .+.+|+|++||+ +++++.+.++|||++|+||++ +...++
T Consensus 170 FIY~vS-~~GvTG~~~~~~~~~~~~i~~ir~~-----t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~~~~~ 243 (263)
T CHL00200 170 CIYLVS-TTGVTGLKTELDKKLKKLIETIKKM-----TNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILLGSSP 243 (263)
T ss_pred cEEEEc-CCCCCCCCccccHHHHHHHHHHHHh-----cCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHHhcCh
Confidence 999999 78999985 334444555555553 357899999999 999999999999999999998 544444
Q ss_pred HHHHHHHHH
Q 023494 264 AEAIKGIKT 272 (281)
Q Consensus 264 ~~~~~~l~~ 272 (281)
.+..+++++
T Consensus 244 ~~~~~~~~~ 252 (263)
T CHL00200 244 EKGLDQLSE 252 (263)
T ss_pred hhHHHHHHH
Confidence 444444444
No 25
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.91 E-value=8.8e-24 Score=185.37 Aligned_cols=201 Identities=21% Similarity=0.186 Sum_probs=157.0
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
-+.|+|+.++.+ .++.+.++.+.+.|++++|+|++|....+. ...++.+++.+ ..+++|+|+++ +++.+.+
T Consensus 9 ~~~it~~~~~~~-~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~----~~~~~~~~~~~-~~~~~~l~~~~---~~~~a~~ 79 (212)
T PRK00043 9 LYLITDSRDDSG-RDLLEVVEAALEGGVTLVQLREKGLDTRER----LELARALKELC-RRYGVPLIVND---RVDLALA 79 (212)
T ss_pred EEEEECCccccc-ccHHHHHHHHHhcCCCEEEEeCCCCCHHHH----HHHHHHHHHHH-HHhCCeEEEeC---hHHHHHH
Confidence 467899988755 578889999999999999999998532221 12233333322 24678999986 8899999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchh-HHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES-QVKKISD 215 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~-~l~kI~~ 215 (281)
+|+|++++|.+.. ....++.+++.|+++|++.+ |+.+..+.+...+|||.++.+.|+...+...+. .++++++
T Consensus 80 ~gad~vh~~~~~~----~~~~~~~~~~~~~~~g~~~~--t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~ 153 (212)
T PRK00043 80 VGADGVHLGQDDL----PVADARALLGPDAIIGLSTH--TLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLRE 153 (212)
T ss_pred cCCCEEecCcccC----CHHHHHHHcCCCCEEEEeCC--CHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHH
Confidence 9999999987642 23456667778999998875 555655555667999999989998766655543 4888998
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+++.++ +++|.++||||.+|+.++.++|||++++||+||+++||.+.++.+++.++.
T Consensus 154 ~~~~~~----~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~ 210 (212)
T PRK00043 154 IRAAVG----DIPIVAIGGITPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRA 210 (212)
T ss_pred HHHhcC----CCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHhh
Confidence 888763 278999999999999999999999999999999999999999999887654
No 26
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.91 E-value=1.2e-23 Score=180.85 Aligned_cols=192 Identities=21% Similarity=0.188 Sum_probs=155.3
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
+.|+|+.++ ..++.+.++.+.+.|++++|+|++|+++.+++. .++.+++.+. .+++|+|+++ +++.+.++
T Consensus 2 ~~it~~~~~--~~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~----~~~~i~~~~~-~~~~~l~~~~---~~~~a~~~ 71 (196)
T cd00564 2 YLITDRRLD--GEDLLEVVEAALKGGVTLVQLREKDLSARELLE----LARALRELCR-KYGVPLIIND---RVDLALAV 71 (196)
T ss_pred EEEeCCccc--cchHHHHHHHHHhcCCCEEEEeCCCCCHHHHHH----HHHHHHHHHH-HhCCeEEEeC---hHHHHHHc
Confidence 468888776 457889999999999999999999998887653 4666766553 6789999987 67888999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc-chhHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQVKKISD 215 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f-~~~~l~kI~~ 215 (281)
|+|++++.... .....++.+++.+..+|+.++ |+ +.+.+... .+|+|.++++.|+..++.+ .+..++++++
T Consensus 72 g~~~vh~~~~~----~~~~~~~~~~~~~~~~g~~~~--t~-~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (196)
T cd00564 72 GADGVHLGQDD----LPVAEARALLGPDLIIGVSTH--SL-EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLRE 144 (196)
T ss_pred CCCEEecCccc----CCHHHHHHHcCCCCEEEeeCC--CH-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHH
Confidence 99977555432 133456677778899999874 44 44455444 5999999999999888777 7788899988
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
+++.. ++++.++|||+.+|+.++.++|+|.+++||+||+++||.+.+++++
T Consensus 145 ~~~~~-----~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~ 195 (196)
T cd00564 145 IAELV-----EIPVVAIGGITPENAAEVLAAGADGVAVISAITGADDPAAAARELL 195 (196)
T ss_pred HHHhC-----CCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence 88762 4789999999999999999999999999999999999999988876
No 27
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=99.91 E-value=3.6e-24 Score=192.25 Aligned_cols=203 Identities=19% Similarity=0.261 Sum_probs=154.5
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEE--EecChhhHHHHHHHcC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL--MIVEPEQRVPDFIKAG 138 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHL--mv~dp~~~i~~~~~aG 138 (281)
+-++|+|+.+++++++.+++.|.+++|+||||+.|+ +||++++++||+. +.+++|+|| |.++|.++++.+.++|
T Consensus 4 ~lilAlD~~~~~~~l~~~~~~~~~~~~ikvg~~~f~---~~G~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~g 80 (230)
T PRK00230 4 RLIVALDFPSKEEALAFLDQLDPAVLFVKVGMELFT---AGGPQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLG 80 (230)
T ss_pred CeEEEcCCCCHHHHHHHHHhcCCcccEEEEcHHHHH---hcCHHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcC
Confidence 357899999999999999999999999999999887 7999999999987 668999999 9999999999999999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHh-hcc--CCEEEEE---eecCCCCCCccchhHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECV-LDV--VDLVLIM---SVNPGFGGQSFIESQV 210 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~-l~~--vD~Ilvm---sV~pG~~GQ~f~~~~l 210 (281)
+|++|||+++. .+.++++.+..+++ +..+++.+-.+.+.+++.+. ... -++++.. ..+.|..|-...+.-
T Consensus 81 ad~itvH~~ag-~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~~- 158 (230)
T PRK00230 81 VDMVNVHASGG-PRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQE- 158 (230)
T ss_pred CCEEEEcccCC-HHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChHH-
Confidence 99999999984 67777788777754 56778765444444444321 110 1111111 122344332222222
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCChh-----------cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~~e-----------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++.+|+.+.+ + .+.|.|||+++ +..+++++|||++|+||+||+++||.++++++++.+.
T Consensus 159 --~~~ir~~~~~---~-~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 159 --AAAIREATGP---D-FLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred --HHHHHhhcCC---c-eEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 4555555432 2 35789999987 8999999999999999999999999999999998765
No 28
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.90 E-value=8.5e-23 Score=198.40 Aligned_cols=196 Identities=21% Similarity=0.331 Sum_probs=165.3
Q ss_pred EeccCccCHHHHHHHHHH---cCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCC---CCeeEEEEecChhhHHHHHHH
Q 023494 64 ILSANFAKLGEQVKAVEL---AGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTD---LPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~---~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~---~~idaHLmv~dp~~~i~~~~~ 136 (281)
++++|+.++++.++.+++ .|++++|+ | + |+. .++.+.+++|++..+ +..|+|+|.. |..+++.+.+
T Consensus 7 ~~alD~~~~~~~~~~~~~~~~~Gv~~ie~----g-~-p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~-g~~~v~~a~~ 79 (430)
T PRK07028 7 QVALDLLELDRAVEIAKEAVAGGADWIEA----G-T-PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDT-GAIEVEMAAK 79 (430)
T ss_pred EEEeccCCHHHHHHHHHHHHhcCCcEEEe----C-C-HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccc-hHHHHHHHHH
Confidence 578999999999887776 89999997 3 3 554 889999999977522 4667888888 8889999999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEE-EECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl-ai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
+|||++++|.+. +..++.++++.++++|+++++ .+++.|+.+.++++.+. +|||.+ .||+++|.+.+..++.++
T Consensus 80 aGAdgV~v~g~~-~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~---~pg~~~~~~~~~~~~~l~ 155 (430)
T PRK07028 80 AGADIVCILGLA-DDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINV---HVGIDQQMLGKDPLELLK 155 (430)
T ss_pred cCCCEEEEecCC-ChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEE---EeccchhhcCCChHHHHH
Confidence 999999999884 233567899999999999998 58888988888777764 999954 689988888777778887
Q ss_pred HHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++++.. +++|.++|||+.+|+.+++++|||.+++||+||+++||++.++++++.++
T Consensus 156 ~l~~~~-----~iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 156 EVSEEV-----SIPIAVAGGLDAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred HHHhhC-----CCcEEEECCCCHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 777542 47899999999999999999999999999999999999999999988664
No 29
>PLN02591 tryptophan synthase
Probab=99.77 E-value=2.4e-17 Score=149.70 Aligned_cols=205 Identities=18% Similarity=0.286 Sum_probs=157.9
Q ss_pred eEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----c------cCCHHHHHHcCcCCCCCee
Q 023494 59 IVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----I------TIGPLVVDALRPVTDLPLD 119 (281)
Q Consensus 59 ~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----~------~~G~~~I~~ir~~t~~~id 119 (281)
.+.|-+.+.|+. ...+.++.+.++|+|.|++. +.||..+.. + .-..+.++++|+.++.|+.
T Consensus 3 ~li~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i 82 (250)
T PLN02591 3 AFIPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV 82 (250)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE
Confidence 378999999874 45567788889999999997 678844432 1 1236778888876677875
Q ss_pred EEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CCEE
Q 023494 120 VHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLV 191 (281)
Q Consensus 120 aHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD~I 191 (281)
||+ .|| ++|++.+.++|+|.+.++.- +.++..++.+.++++|+.....+.|+|+.++++.+... -++|
T Consensus 83 --lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDL--P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFI 158 (250)
T PLN02591 83 --LFTYYNPILKRGIDKFMATIKEAGVHGLVVPDL--PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFV 158 (250)
T ss_pred --EEecccHHHHhHHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 788 477 35788899999999999976 46788899999999999999999999999999998776 4677
Q ss_pred EEEeecCCCCCC--ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC----CCHH
Q 023494 192 LIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA----KDYA 264 (281)
Q Consensus 192 lvmsV~pG~~GQ--~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a----~dp~ 264 (281)
.+.++ .|.+|. .+.+...+.++++|+.. +.++.|..||+ +++++.+.+.|||.+|+||++.+. +++.
T Consensus 159 Y~Vs~-~GvTG~~~~~~~~~~~~i~~vk~~~-----~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~~~~~~~ 232 (250)
T PLN02591 159 YLVSS-TGVTGARASVSGRVESLLQELKEVT-----DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALGEAKSPE 232 (250)
T ss_pred EEeeC-CCCcCCCcCCchhHHHHHHHHHhcC-----CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhhhccChh
Confidence 76666 566664 34444455577777742 47899999999 999999999999999999999652 2455
Q ss_pred HHHHHHHHh
Q 023494 265 EAIKGIKTS 273 (281)
Q Consensus 265 ~~~~~l~~~ 273 (281)
+..+++.+.
T Consensus 233 ~~~~~~~~~ 241 (250)
T PLN02591 233 EGLKRLEKL 241 (250)
T ss_pred HHHHHHHHH
Confidence 444444443
No 30
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=99.71 E-value=6.5e-17 Score=143.52 Aligned_cols=184 Identities=20% Similarity=0.276 Sum_probs=126.9
Q ss_pred EeccCccCHHHHHHHHHHcC--CCeEEEEeeeCccccc-ccCCHHHHHHcCcCCCCCeeEEEEecChh----hHHHHHHH
Q 023494 64 ILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPN-ITIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIK 136 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn-~~~G~~~I~~ir~~t~~~idaHLmv~dp~----~~i~~~~~ 136 (281)
++|+|+.+++++++.+++.+ ++++.+ ++ +. .++|++.+++||+.. .++.+|++..|.. .+++.+++
T Consensus 2 ivAlD~~~~~~a~~~~~~~~~~v~~iKi-----g~-~l~~~~G~~~v~~l~~~~-~~v~lD~K~~Dig~t~~~~~~~~~~ 74 (213)
T TIGR01740 2 IVALDVTTKDEALDLADSLGPEIEVIKV-----GI-DLLLDGGDKIIDELAKLN-KLIFLDLKFADIPNTVKLQYESKIK 74 (213)
T ss_pred EEECCCCCHHHHHHHHHhcCCcCcEEEE-----CH-HHHHhcCHHHHHHHHHcC-CCEEEEEeecchHHHHHHHHHHHHh
Confidence 68999999999999999887 666333 22 22 278999999999864 4677888887765 46777889
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE---CCCCCHH-------HHHHhhccCCEEEEEeecCCCCCCccc
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL---NPATSLS-------AIECVLDVVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai---~p~t~ie-------~~~~~l~~vD~IlvmsV~pG~~GQ~f~ 206 (281)
+|||++|+|+++. .+.++++++.++++|.++-+.. |+. +.+ .+..+..... .-|..|--..
T Consensus 75 ~gad~vTvh~~~g-~~~l~~~~~~~~~~~~~v~~v~~lss~~-~~~~~~~~~~~v~~~a~~~~-------~~g~~g~v~~ 145 (213)
T TIGR01740 75 QGADMVNVHGVAG-SESVEAAKEAASEGGRGLLAVTELTSMG-SLDYGEDTMEKVLEYAKEAK-------AFGLDGPVCS 145 (213)
T ss_pred cCCCEEEEcCCCC-HHHHHHHHHHhhcCCCeEEEEEcCCCCC-hhhhCcCHHHHHHHHHHHhh-------hcCCeEEEeC
Confidence 9999999999974 5668899999888886554332 332 111 1111111110 1132232223
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChh---cH--------HHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK---NA--------YKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e---~i--------~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
|+.+ +++|+..+ + .+.+.+||+++ .. +.+.++|||++|+||+||+++||.+.+++++
T Consensus 146 ~~~~---~~ir~~~~----~-~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~~~~~ 213 (213)
T TIGR01740 146 AEEA---KEIRKFTG----D-FLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAAKRIR 213 (213)
T ss_pred HHHH---HHHHHhcC----C-ceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHhC
Confidence 4444 44444432 2 35689999977 33 8899999999999999999999999988764
No 31
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=99.71 E-value=1.8e-16 Score=140.49 Aligned_cols=184 Identities=21% Similarity=0.201 Sum_probs=148.4
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 152 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~ 152 (281)
.++++.+.+.|++.+++...|... ..+ ....+++++.+ ....+-++++| +++.+.+.|||+||+.+++.
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~---~~~-~~~a~~~~~lc-~~~~v~liINd---~~dlA~~~~AdGVHlGq~D~--- 92 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSD---EEY-LALAEKLRALC-QKYGVPLIIND---RVDLALAVGADGVHLGQDDM--- 92 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCh---HHH-HHHHHHHHHHH-HHhCCeEEecC---cHHHHHhCCCCEEEcCCccc---
Confidence 578999999999999999888632 111 45556666654 34577889999 88888999999999999953
Q ss_pred cHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 153 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 153 ~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
.....+++...++.+|++.+ +.+++.+.... +|||.+..+.|..+-+.-.+..++.++++++.. .+++.+
T Consensus 93 -~~~~ar~~~~~~~iIG~S~h---~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~-----~iP~vA 163 (211)
T COG0352 93 -PLAEARELLGPGLIIGLSTH---DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV-----NIPVVA 163 (211)
T ss_pred -chHHHHHhcCCCCEEEeecC---CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC-----CCCEEE
Confidence 33455666677889999987 67666665544 999999999998764444778888888887764 268999
Q ss_pred ecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 232 DGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 232 DGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
.||||++|+.+++++|||.+.+-|+||.++||.++++++++.++.
T Consensus 164 IGGi~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~ 208 (211)
T COG0352 164 IGGINLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALED 208 (211)
T ss_pred EcCCCHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987653
No 32
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.71 E-value=4.7e-16 Score=141.99 Aligned_cols=194 Identities=21% Similarity=0.244 Sum_probs=150.6
Q ss_pred CCceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcC-cCCC
Q 023494 56 SDIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALR-PVTD 115 (281)
Q Consensus 56 ~~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir-~~t~ 115 (281)
++..+.|-+.+.|+. ...+.++.+.+.|+|+|++. +.||..+.. +.-..+.++++| +.++
T Consensus 10 ~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~ 89 (258)
T PRK13111 10 GRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPT 89 (258)
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 345699999999874 55566778889999999997 677744432 112367788888 4467
Q ss_pred CCeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-
Q 023494 116 LPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV- 187 (281)
Q Consensus 116 ~~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~- 187 (281)
.|+. +|+ .|| ++|++.+.++|+|++.++.- +.++..++++.++++|+.....+.|+|+.++++.+...
T Consensus 90 ~p~v--lm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL--p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s 165 (258)
T PRK13111 90 IPIV--LMTYYNPIFQYGVERFAADAAEAGVDGLIIPDL--PPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA 165 (258)
T ss_pred CCEE--EEecccHHhhcCHHHHHHHHHHcCCcEEEECCC--CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 8876 677 466 35788999999999999865 46788999999999999999999999999999988775
Q ss_pred CCEEEEEeecCCCCCC--ccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCC
Q 023494 188 VDLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 188 vD~IlvmsV~pG~~GQ--~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.++|.+.++ .|.+|. .+.+...+.++++|+.. +.++.|.||| +++++.++.+. ||.+|+||+|.+.
T Consensus 166 ~gfIY~vs~-~GvTG~~~~~~~~~~~~i~~vk~~~-----~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~ 234 (258)
T PRK13111 166 SGFVYYVSR-AGVTGARSADAADLAELVARLKAHT-----DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKI 234 (258)
T ss_pred CCcEEEEeC-CCCCCcccCCCccHHHHHHHHHhcC-----CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHH
Confidence 467776565 354443 34455566788888754 3689999999 58999998875 9999999998753
No 33
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=99.71 E-value=1.2e-16 Score=145.79 Aligned_cols=208 Identities=23% Similarity=0.283 Sum_probs=157.9
Q ss_pred CceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcC-cCCCC
Q 023494 57 DIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALR-PVTDL 116 (281)
Q Consensus 57 ~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir-~~t~~ 116 (281)
+..+.|-|.+.|+. ...+.++.+.++|+|.+++. +.||..+.. +.-..++++++| +.++.
T Consensus 9 ~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~ 88 (259)
T PF00290_consen 9 RKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDI 88 (259)
T ss_dssp BTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCC
Confidence 45789999999884 66678888999999999998 577744332 112246688888 66778
Q ss_pred CeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-C
Q 023494 117 PLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-V 188 (281)
Q Consensus 117 ~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-v 188 (281)
|+.+ |+ .|| ++|++.+.++|+|++.++.- +.++..++.+.++++|+.....+.|+|+.++++.+... -
T Consensus 89 pivl--m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDL--P~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~ 164 (259)
T PF00290_consen 89 PIVL--MTYYNPIFQYGIERFFKEAKEAGVDGLIIPDL--PPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQAS 164 (259)
T ss_dssp EEEE--EE-HHHHHHH-HHHHHHHHHHHTEEEEEETTS--BGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-S
T ss_pred CEEE--EeeccHHhccchHHHHHHHHHcCCCEEEEcCC--ChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCC
Confidence 8776 77 365 35778888999999999987 46778889999999999999999999999999998876 4
Q ss_pred CEEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC-----C
Q 023494 189 DLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG-----A 260 (281)
Q Consensus 189 D~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~-----a 260 (281)
.+|.++++ .|.+|.. +.....+.|+++|+.. +.++.|..||+ +++++.+. .|||++|+||++.+ .
T Consensus 165 gFiY~vs~-~GvTG~~~~~~~~l~~~i~~ik~~~-----~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~ 237 (259)
T PF00290_consen 165 GFIYLVSR-MGVTGSRTELPDELKEFIKRIKKHT-----DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENG 237 (259)
T ss_dssp SEEEEESS-SSSSSTTSSCHHHHHHHHHHHHHTT-----SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTC
T ss_pred cEEEeecc-CCCCCCcccchHHHHHHHHHHHhhc-----CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHcc
Confidence 66766666 4665533 4455667788887764 47999999999 78999977 99999999999874 3
Q ss_pred CCHHHHHHHHHHhcC
Q 023494 261 KDYAEAIKGIKTSKR 275 (281)
Q Consensus 261 ~dp~~~~~~l~~~~~ 275 (281)
++..+.++++++.++
T Consensus 238 ~~~~~~~~~~~~~~~ 252 (259)
T PF00290_consen 238 DDAEKFLKELKEFVR 252 (259)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 456667777766544
No 34
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.69 E-value=5.7e-17 Score=144.54 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=139.3
Q ss_pred EEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccc-cCCHHHHHHcCcC-CCCCeeEEEEecChhhHH-HHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNI-TIGPLVVDALRPV-TDLPLDVHLMIVEPEQRV-PDFIK 136 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i-~~~~~ 136 (281)
+-++|+|+.+++++++.+.+.+ ++|+.+ | .|.+ .+|++.|++||+. +++++.+||++.|..+++ +.+.+
T Consensus 5 ~livALD~~~~~~A~~l~~~l~~~v~~iKV----G--~~L~~~~G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~ 78 (218)
T PRK13305 5 LLQLALDHTSLEAAQRDVTLLKDHVDIVEA----G--TILCLNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFG 78 (218)
T ss_pred CEEEEeCCCCHHHHHHHHHHccccCCEEEE----C--HHHHHHhCHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHH
Confidence 4578899999999999887652 445444 5 3554 9999999999985 688999999999998764 45679
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcE---EEEECCCCCHHHHHHhhccCC-EEEEEeecCCCCCCccchhHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA---GVVLNPATSLSAIECVLDVVD-LVLIMSVNPGFGGQSFIESQVKK 212 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~---Glai~p~t~ie~~~~~l~~vD-~IlvmsV~pG~~GQ~f~~~~l~k 212 (281)
+|+|.+++|..+ ..+.+.+..+.++++|.++ -+.+......+++.++ .++ +++..+....-.|.-+-+.-++.
T Consensus 79 ~Gad~~tv~~~~-g~~~i~~a~~~a~~~~~~~~~~llgV~t~~~~~~l~~~--g~~~~v~h~a~~a~~~G~v~s~~e~~~ 155 (218)
T PRK13305 79 AGANWMTIICAA-PLATVEKGHAVAQRCGGEIQIELFGNWTLDDARDWHRI--GVRQAIYHRGRDAQASGQQWGEADLAR 155 (218)
T ss_pred cCCCEEEEecCC-CHHHHHHHHHHHHhcCCcccceEEEecCcchHHHHHHc--CCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 999999999875 3667777777666656442 1222111222333322 122 22222221111333334444444
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+ |+... .++++.|.|||++++....-+.++|++|+||+|++++||.++++++++.++.
T Consensus 156 i---r~~~~---~~~~i~VtpGIr~~~~~~~dq~rvd~iVVGR~It~A~dP~~aa~~i~~~i~~ 213 (218)
T PRK13305 156 M---KALSD---IGLELSITGGITPADLPLFKDIRVKAFIAGRALAGAANPAQVAADFHAQIDA 213 (218)
T ss_pred H---HHHhC---CCCcEEEeCCcCccccccccccCCCEEEECCcccCCCCHHHHHHHHHHHHHH
Confidence 4 44432 2577999999999999999999999999999999999999999999987753
No 35
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=99.69 E-value=1.3e-15 Score=138.41 Aligned_cols=192 Identities=20% Similarity=0.260 Sum_probs=150.9
Q ss_pred CceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcCcC-CCC
Q 023494 57 DIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALRPV-TDL 116 (281)
Q Consensus 57 ~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir~~-t~~ 116 (281)
+..+.|.+.++|+. ...+.++.|.++|+|.|++. +.||..+.. +.--.++++.+|+. ++.
T Consensus 16 ~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~ 95 (265)
T COG0159 16 RGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKV 95 (265)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCC
Confidence 35699999999974 56677788889999999997 678844432 12235667778853 667
Q ss_pred CeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccC-
Q 023494 117 PLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV- 188 (281)
Q Consensus 117 ~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~v- 188 (281)
|+.+ |+ .|| ++|++.+.++|+|++.+..- +.++..++.+.++++|+.......|+|+.++++.+....
T Consensus 96 Pivl--m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL--P~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~ 171 (265)
T COG0159 96 PIVL--MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDL--PPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAAS 171 (265)
T ss_pred CEEE--EEeccHHHHhhHHHHHHHHHHcCCCEEEeCCC--ChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC
Confidence 8775 66 688 35788899999999999976 567788899999999999999999999999999998875
Q ss_pred CEEEEEeecCCCCCCccc--hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 189 DLVLIMSVNPGFGGQSFI--ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 189 D~IlvmsV~pG~~GQ~f~--~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+|.+.++. |.+|..-. ....+.++++|+.. +.++.|..||+ +++++++.++ ||.+|+||+|.+
T Consensus 172 GFiY~vs~~-GvTG~~~~~~~~~~~~v~~vr~~~-----~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 172 GFIYYVSRM-GVTGARNPVSADVKELVKRVRKYT-----DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred CcEEEEecc-cccCCCcccchhHHHHHHHHHHhc-----CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 566666664 55554322 23567788888775 36899999999 9999999999 999999999985
No 36
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.62 E-value=6.6e-14 Score=124.08 Aligned_cols=185 Identities=22% Similarity=0.251 Sum_probs=139.1
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
.+..+..+..+++|+++||+---|+.|- -.++.++.+|+..+.|+.+.-.+.++ ..++.+.++|||+|++...+.
T Consensus 31 ~~~~~~A~~~~~~GA~~l~v~~~~~~~~----g~~~~~~~i~~~v~iPi~~~~~i~~~-~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 31 FDPVEIAKAYEKAGAAAISVLTEPKYFQ----GSLEDLRAVREAVSLPVLRKDFIIDP-YQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCccccC----CCHHHHHHHHHhcCCCEEECCeecCH-HHHHHHHHcCCCEEEEeeccC
Confidence 3577777888899999999855555432 25678888888778898876556666 378899999999999887654
Q ss_pred ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 150 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
+.+++.++++.++..|+.+-+.++ ..++++...+ .+|++.+- +..++.+.+. ++.++++++.++ .+.+
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~v~v~---~~~e~~~~~~~g~~~i~~t----~~~~~~~~~~-~~~~~~l~~~~~---~~~p 174 (217)
T cd00331 106 DDEQLKELYELARELGMEVLVEVH---DEEELERALALGAKIIGIN----NRDLKTFEVD-LNTTERLAPLIP---KDVI 174 (217)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHHcCCCEEEEe----CCCccccCcC-HHHHHHHHHhCC---CCCE
Confidence 335678888888999999877775 4444555544 48988753 3445545433 366677766542 1367
Q ss_pred EEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 229 IEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 229 I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
+.+-|||+ ++++.++.++|||.+++||+|++..||.+.+++|
T Consensus 175 via~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~~~~~~~ 217 (217)
T cd00331 175 LVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALREL 217 (217)
T ss_pred EEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHhC
Confidence 88899997 6999999999999999999999999999888753
No 37
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.61 E-value=7.2e-14 Score=118.58 Aligned_cols=180 Identities=26% Similarity=0.249 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHH----HHHHcCCCEEEEcc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP----DFIKAGADIVSVHC 146 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~----~~~~aGAd~Itvh~ 146 (281)
+..+.++.+.+.|++.+|+..++.++......+++.++.+++..+.|+.+|++++++..++. .+.++|+|+|.+|.
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~ 92 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG 92 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence 55778888999999999999999876666555545577766667899999999999987664 77899999999998
Q ss_pred cccc-cccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhc
Q 023494 147 EQSS-TIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEK 223 (281)
Q Consensus 147 Ea~~-~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~ 223 (281)
+... .....+.++.+++. ++.+++.+++.+..+........+|+|.+....++..++...+.....+++++.
T Consensus 93 ~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 167 (200)
T cd04722 93 AVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR----- 167 (200)
T ss_pred cCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-----
Confidence 8520 01256788888887 899999998877665432122258999887776665554443333333443332
Q ss_pred CCCCeEEEecCCCh-hcHHHHHHcCCcEEEEcc
Q 023494 224 GVNPWIEVDGGVGP-KNAYKVIEAGANALVAGS 255 (281)
Q Consensus 224 ~~~~~I~VDGGI~~-e~i~~~~~aGAD~~VvGS 255 (281)
..+++|.++|||+. +++.+++++|||.+++||
T Consensus 168 ~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 168 GSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 23578999999997 999999999999999997
No 38
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.59 E-value=1.9e-14 Score=138.88 Aligned_cols=188 Identities=15% Similarity=0.085 Sum_probs=142.4
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
++++.+.++|+++++++..|.. .-. -...++++++.+ ....+.|.++| +++.+.+.|||+||+..+.. .
T Consensus 221 ~~ve~aL~aGv~~VQLReK~ls---~~e-l~~la~~l~~l~-~~~gv~LiIND---~~dlAl~~gAdGVHLGQeDL--~- 289 (437)
T PRK12290 221 EWIERLLPLGINTVQLRIKDPQ---QAD-LEQQIIRAIALG-REYNAQVFIND---YWQLAIKHQAYGVHLGQEDL--E- 289 (437)
T ss_pred HHHHHHHhCCCCEEEEeCCCCC---HHH-HHHHHHHHHHHH-HHhCCEEEEEC---HHHHHHHcCCCEEEcChHHc--c-
Confidence 5699999999999999988852 111 123344444433 23467889999 89999999999999999863 1
Q ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCC-ccchhHHHHHHHHHHHhhh----cCCCCe
Q 023494 154 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQ-SFIESQVKKISDLRRMCLE----KGVNPW 228 (281)
Q Consensus 154 i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ-~f~~~~l~kI~~lr~l~~~----~~~~~~ 228 (281)
....+.+...|..+|++.+ +.-|..+..-..+|||.+..+.|..+-+ ...|..++++++++++++. ...+++
T Consensus 290 -~~~aR~ilg~~~iIGvStH--s~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iP 366 (437)
T PRK12290 290 -EANLAQLTDAGIRLGLSTH--GYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFP 366 (437)
T ss_pred -hhhhhhhcCCCCEEEEecC--CHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCC
Confidence 2334455556788898875 3333333333469999999999987654 5678889999988887642 123579
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+...|||+++|+.++.++||+.+.+-|+|++++||+++++++++.+.
T Consensus 367 VVAIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~ 413 (437)
T PRK12290 367 TVAIGGIDQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMA 413 (437)
T ss_pred EEEECCcCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998654
No 39
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.54 E-value=1.6e-13 Score=122.80 Aligned_cols=197 Identities=15% Similarity=0.073 Sum_probs=137.9
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcC-CCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAG-CDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G-~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
+.|+|... +...+.+.++.+.+.| ++++++.-.+-. .- .-....+++++.+ ....+.|.++| +++.+.+
T Consensus 16 y~It~~~~--~~~~~~~~l~~al~~G~v~~vQlR~K~l~---~~-~~~~~a~~l~~l~-~~~gv~liINd---~~dlA~~ 85 (221)
T PRK06512 16 VLVAPPIA--DGAELAKLLRAALQGGDVASVILPQYGLD---EA-TFQKQAEKLVPVI-QEAGAAALIAG---DSRIAGR 85 (221)
T ss_pred EEEeCCCc--ccccHHHHHHHHHcCCCccEEEEeCCCCC---HH-HHHHHHHHHHHHH-HHhCCEEEEeC---HHHHHHH
Confidence 44666643 3346778899999999 799999866642 11 1123445555443 23357788998 7888899
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHh-hccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV-LDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~-l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
.|||+||+..+.. .+.+..+. ...+..+|++. .++.+...+- -..+|||.+..+.+.. -....|..++.+++
T Consensus 86 ~~adGVHLg~~d~---~~~~~r~~-~~~~~iiG~s~--~~s~~~a~~A~~~gaDYv~~Gpv~t~t-K~~~~p~gl~~l~~ 158 (221)
T PRK06512 86 VKADGLHIEGNLA---ALAEAIEK-HAPKMIVGFGN--LRDRHGAMEIGELRPDYLFFGKLGADN-KPEAHPRNLSLAEW 158 (221)
T ss_pred hCCCEEEECcccc---CHHHHHHh-cCCCCEEEecC--CCCHHHHHHhhhcCCCEEEECCCCCCC-CCCCCCCChHHHHH
Confidence 9999999998742 23222222 22344566652 2344444443 2468999998886532 22345667788877
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+++.. ++++.+-||||++|+.++.++||+.+.+-|+|++++||+++++++++.+++
T Consensus 159 ~~~~~-----~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~ 214 (221)
T PRK06512 159 WAEMI-----EIPCIVQAGSDLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDE 214 (221)
T ss_pred HHHhC-----CCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhh
Confidence 76653 479999999999999999999999999999999999999999999987764
No 40
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=99.53 E-value=2.1e-13 Score=118.68 Aligned_cols=191 Identities=18% Similarity=0.174 Sum_probs=126.4
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
.|+|...+ ...+.+.++.+.+.|++++|+...|.. -..-...+++++..+ ....+.+++++ +++.+.+.|
T Consensus 4 ~it~~~~~--~~~~~~~~~~~~~~g~~~v~lR~~~~~----~~~~~~~~~~l~~~~-~~~~~~l~i~~---~~~la~~~g 73 (196)
T TIGR00693 4 LITDPQDG--PADLLNRVEAALKGGVTLVQLRDKGSN----TRERLALAEKLQELC-RRYGVPFIVND---RVDLALALG 73 (196)
T ss_pred EEECCccc--cccHHHHHHHHHhcCCCEEEEecCCCC----HHHHHHHHHHHHHHH-HHhCCeEEEEC---HHHHHHHcC
Confidence 45555332 235677888888999999999866531 111123444444432 12356678877 778889999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCC-CccchhHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGG-QSFIESQVKKISDL 216 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~G-Q~f~~~~l~kI~~l 216 (281)
+|+|++..... .. ..++.....+..+|+..+ ..+.+.... ..+|||.+-.+.|.... +...+..++.++++
T Consensus 74 ~~GvHl~~~~~---~~-~~~r~~~~~~~~ig~s~h---~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~ 146 (196)
T TIGR00693 74 ADGVHLGQDDL---PA-SEARALLGPDKIIGVSTH---NLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREI 146 (196)
T ss_pred CCEEecCcccC---CH-HHHHHhcCCCCEEEEeCC---CHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHH
Confidence 99999975532 12 233433445677777765 333344433 36999988766653221 11122346666666
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
++... +.++.+-|||++++++++.++|+|.+++||+|++++||.+.+++|
T Consensus 147 ~~~~~----~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 147 AATSI----DIPIVAIGGITLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred HHhcC----CCCEEEECCcCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
Confidence 65532 368999999999999999999999999999999999999888753
No 41
>PRK07695 transcriptional regulator TenI; Provisional
Probab=99.52 E-value=6.2e-13 Score=116.69 Aligned_cols=194 Identities=18% Similarity=0.153 Sum_probs=132.9
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
+.|+++-++. ..+.+..+ +.+.|++++|++..+... ..-...++.+++.. .+ ...|+++| +.+.+.+.
T Consensus 5 ~~it~~~~~~--~~~~~~~~-~~~~g~~~iqlR~k~~~~----~~~~~~~~~l~~~~-~~-~~~liin~---~~~la~~~ 72 (201)
T PRK07695 5 HVISNGHQSF--EELVAVAM-QIHSEVDYIHIREREKSA----KELYEGVESLLKKG-VP-ASKLIIND---RVDIALLL 72 (201)
T ss_pred EEEECCcccc--chHHHHHH-HHhCCCCEEEEcCCCCCH----HHHHHHHHHHHHhC-CC-CCeEEEEC---HHHHHHHc
Confidence 5577775543 24555555 667899999998665421 11123455555432 22 34689998 56778899
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
|+|++++..... .+....+.. .+..+|+..+ +.+.+....+ .+|||.+..+.|....+...+..++.++++
T Consensus 73 ~~~gvHl~~~~~---~~~~~r~~~--~~~~ig~s~~---s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~ 144 (201)
T PRK07695 73 NIHRVQLGYRSF---SVRSVREKF--PYLHVGYSVH---SLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDI 144 (201)
T ss_pred CCCEEEeCcccC---CHHHHHHhC--CCCEEEEeCC---CHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHH
Confidence 999999987632 232222221 2677888654 4555555433 589998766666544333334456667766
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
++.. ++++.+-|||+++++.++.+.|+|.+.+||+|++++||.++++++++.++.
T Consensus 145 ~~~~-----~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~ 199 (201)
T PRK07695 145 ARAL-----SIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKK 199 (201)
T ss_pred HHhC-----CCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhh
Confidence 6543 478999999999999999999999999999999999999999999987653
No 42
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.51 E-value=2.5e-13 Score=128.70 Aligned_cols=203 Identities=15% Similarity=0.117 Sum_probs=140.4
Q ss_pred cccCCCCC-ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh
Q 023494 50 VDKFSKSD-IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE 128 (281)
Q Consensus 50 ~~~~~~~~-~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~ 128 (281)
-..+.+.. +.|+++ ..++.+.++.+.++|++++|+...+.. .- .-....+.+++.+ ....+.++++|
T Consensus 141 ~~~l~~~~LylIT~~-----~~~ll~~l~~al~~Gv~~VQLR~K~~~---~~-~~~~~a~~L~~l~-~~~~~~lIIND-- 208 (347)
T PRK02615 141 RQRLKDARLYLITSP-----SENLLEVVEAALKGGVTLVQYRDKTAD---DR-QRLEEAKKLKELC-HRYGALFIVND-- 208 (347)
T ss_pred HHhhccCCEEEEECC-----chhHHHHHHHHHHcCCCEEEECCCCCC---HH-HHHHHHHHHHHHH-HHhCCeEEEeC--
Confidence 33444433 345555 235777888999999999999866641 11 1123344444433 23457789998
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHH-hhccCCEEEEEeecCCCCCCccch
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC-VLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~-~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+++.+.+.|+|+||+..... . + ...+.....+..+|++.+ + .+.+.. .-..+|||.+..+.|..+...-.+
T Consensus 209 -~vdlAl~~~aDGVHLgq~dl--~-~-~~aR~llg~~~iIG~S~H--s-~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~ 280 (347)
T PRK02615 209 -RVDIALAVDADGVHLGQEDL--P-L-AVARQLLGPEKIIGRSTT--N-PEEMAKAIAEGADYIGVGPVFPTPTKPGKAP 280 (347)
T ss_pred -hHHHHHHcCCCEEEeChhhc--C-H-HHHHHhcCCCCEEEEecC--C-HHHHHHHHHcCCCEEEECCCcCCCCCCCCCC
Confidence 78888999999999987642 1 2 222222224456777774 3 444444 344799999988887644322235
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCcC
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~~ 277 (281)
-.++.++++++.. ++++.+-|||+++|+.++.++|++.++++|+|++++||.++++++.+.+.+.
T Consensus 281 ~Gle~l~~~~~~~-----~iPv~AiGGI~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~~ 345 (347)
T PRK02615 281 AGLEYLKYAAKEA-----PIPWFAIGGIDKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSRE 345 (347)
T ss_pred CCHHHHHHHHHhC-----CCCEEEECCCCHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhcc
Confidence 5577777776643 3688899999999999999999999999999999999999999999877643
No 43
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=99.49 E-value=4.6e-12 Score=115.92 Aligned_cols=187 Identities=22% Similarity=0.265 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.++++|++-|-+ .-|..| +.=+.+.++.+|+.+++|+...=.+.+|. .+..+.++|||+|++.+...+
T Consensus 71 ~~~~~A~~~~~~GA~aisv-lte~~~---f~g~~~~l~~v~~~v~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~~l~ 145 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSV-LTDERF---FQGSLEYLRAARAAVSLPVLRKDFIIDPY-QIYEARAAGADAILLIVAALD 145 (260)
T ss_pred CHHHHHHHHHhCCCeEEEE-eccccc---CCCCHHHHHHHHHhcCCCEEeeeecCCHH-HHHHHHHcCCCEEEEEeccCC
Confidence 5677778888999998744 223322 23357889999888889999877778877 588899999999999988643
Q ss_pred cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
.+++.++++.+++.|+.+-+.++. .++++...+ .+|+|.+ + +.+-+.|.+. ++...++.+.+++ ....|
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~---~~E~~~A~~~gadiIgi---n-~rdl~~~~~d-~~~~~~l~~~~p~--~~~vI 215 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHD---EEELERALKLGAPLIGI---N-NRNLKTFEVD-LETTERLAPLIPS--DRLVV 215 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCCEEEE---C-CCCcccccCC-HHHHHHHHHhCCC--CCEEE
Confidence 458999999999999999998863 333333333 5888864 3 2223344333 5666666665532 11345
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
+..|+.+++++..+.++|+|.+++||+|.+++||.+.+++|+.
T Consensus 216 aegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~~ 258 (260)
T PRK00278 216 SESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAALRELLG 258 (260)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHhc
Confidence 5445557999999999999999999999999999999988754
No 44
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=99.45 E-value=1.4e-11 Score=107.46 Aligned_cols=198 Identities=20% Similarity=0.242 Sum_probs=139.0
Q ss_pred CCCceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc---------ccC--CHHHHHHcCcCCC
Q 023494 55 KSDIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN---------ITI--GPLVVDALRPVTD 115 (281)
Q Consensus 55 ~~~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn---------~~~--G~~~I~~ir~~t~ 115 (281)
+++.-+.|.+-|.|+. +..+.++-+..+|.|.|++. +.||..+.. ++| -.++++..|.. +
T Consensus 15 enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~-g 93 (268)
T KOG4175|consen 15 ENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQ-G 93 (268)
T ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhccc-C
Confidence 3456788999999873 55566777788999999996 567732221 122 12334443432 2
Q ss_pred CCeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccC
Q 023494 116 LPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV 188 (281)
Q Consensus 116 ~~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~v 188 (281)
..+-+-||. .|| ++|+..+.++||++..+..- +.++...+.+++|++|+.......|.|+.|+.+-+....
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDl--PpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~a 171 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDL--PPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAA 171 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccC--ChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhh
Confidence 333344677 688 36888899999999988866 456778889999999999999999999999998877766
Q ss_pred CE-EEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 189 DL-VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 189 D~-IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
|- |.+.+ .-|..|.. ...-+++.++.+.+++.-.+.+++|..||+ +|+.+++-.. ||.+|+||.|.+
T Consensus 172 dsFiYvVS-rmG~TG~~--~svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 172 DSFIYVVS-RMGVTGTR--ESVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVK 240 (268)
T ss_pred cceEEEEE-eccccccH--HHHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh-ccceEecHHHHH
Confidence 64 44433 34766632 233444444444444333356899999999 8899998777 999999999863
No 45
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.45 E-value=3.6e-12 Score=113.26 Aligned_cols=183 Identities=19% Similarity=0.143 Sum_probs=127.4
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
+.++.+.++|+++||+...+-. .-.+ ....+++++.+ ....+.++++| +++.+.+.|+|+||+..+.. .
T Consensus 23 ~~l~~~l~~G~~~vqLR~k~~~---~~~~-~~la~~l~~~~-~~~~~~liInd---~~~lA~~~~adGVHlg~~d~---~ 91 (211)
T PRK03512 23 QWIERLLDAGVRTLQLRIKDRR---DEEV-EADVVAAIALG-RRYQARLFIND---YWRLAIKHQAYGVHLGQEDL---E 91 (211)
T ss_pred HHHHHHHhCCCCEEEEcCCCCC---HHHH-HHHHHHHHHHH-HHhCCeEEEeC---HHHHHHHcCCCEEEcChHhC---C
Confidence 4688899999999999866542 1111 12233333322 22467788888 78888899999999987642 1
Q ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCCc-cchhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 154 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 154 i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~-f~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
+ ...+.+...+..+|++.+ ..+.+.... ..+||+.+..+.|..+-+. -.+..++.++++++.. .++++.+
T Consensus 92 ~-~~~r~~~~~~~~iG~S~H---~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~----~~~PV~A 163 (211)
T PRK03512 92 T-ADLNAIRAAGLRLGVSTH---DDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL----ADYPTVA 163 (211)
T ss_pred H-HHHHHhcCCCCEEEEeCC---CHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----CCCCEEE
Confidence 1 223333334566777774 344444433 3699999998988754332 2234556666655432 2478999
Q ss_pred ecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 232 DGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 232 DGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
-|||+++|+.++.++|++.+.+-|+|++++||.++++++++.+.
T Consensus 164 iGGI~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~~~~ 207 (211)
T PRK03512 164 IGGISLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLELAE 207 (211)
T ss_pred ECCCCHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988654
No 46
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=99.39 E-value=6.4e-12 Score=108.57 Aligned_cols=176 Identities=20% Similarity=0.145 Sum_probs=117.4
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
|+|.-++ ..++.+.++.+.+.|++++|++..+..-- .-.+.++.+++.+ ....+.++++| +++.+.+.|+
T Consensus 4 It~~~~~--~~~~~~~l~~~~~~gv~~v~lR~k~~~~~----~~~~~a~~l~~~~-~~~~~~liin~---~~~la~~~~~ 73 (180)
T PF02581_consen 4 ITDPRLC--GDDFLEQLEAALAAGVDLVQLREKDLSDE----ELLELARRLAELC-QKYGVPLIIND---RVDLALELGA 73 (180)
T ss_dssp EE-STTS--TCHHHHHHHHHHHTT-SEEEEE-SSS-HH----HHHHHHHHHHHHH-HHTTGCEEEES----HHHHHHCT-
T ss_pred EeCCchh--cchHHHHHHHHHHCCCcEEEEcCCCCCcc----HHHHHHHHHHHHh-hcceEEEEecC---CHHHHHhcCC
Confidence 4555444 45678889999999999999997764211 1122344443332 12356678888 7788899999
Q ss_pred CEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCCccchhHHHHHHHHHH
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~ 218 (281)
|+||+..... ...+ .+.....+..+|.+.+ ..+.+.+.. ..+|||.+-.++|..+-....+..++.++++++
T Consensus 74 dGvHl~~~~~---~~~~-~r~~~~~~~~ig~S~h---~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~ 146 (180)
T PF02581_consen 74 DGVHLGQSDL---PPAE-ARKLLGPDKIIGASCH---SLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIAR 146 (180)
T ss_dssp SEEEEBTTSS---SHHH-HHHHHTTTSEEEEEES---SHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHH
T ss_pred CEEEeccccc---chHH-hhhhcccceEEEeecC---cHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHH
Confidence 9999998742 2322 3333445788998886 444455544 469999999998877654446777888888887
Q ss_pred HhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccc
Q 023494 219 MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
..+ .++.+-|||+++|+.++.++|++.+.+.|+|
T Consensus 147 ~~~-----~pv~AlGGI~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 147 ASP-----IPVYALGGITPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp HTS-----SCEEEESS--TTTHHHHHHTT-SEEEESHHH
T ss_pred hCC-----CCEEEEcCCCHHHHHHHHHcCCCEEEEEeeC
Confidence 753 6899999999999999999999999999886
No 47
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=99.38 E-value=2.2e-12 Score=114.86 Aligned_cols=193 Identities=19% Similarity=0.237 Sum_probs=127.3
Q ss_pred EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhH----HHHHHHcC
Q 023494 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQR----VPDFIKAG 138 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~----i~~~~~aG 138 (281)
++++|+.++++.++.+++.+ ++ +++..-++ |.+ .+|++.++.||+.. +++.+|+|..|.... ++.+.+.|
T Consensus 2 ivALD~~~~~~a~~i~~~~~-~~--v~~iKvg~-~l~~~~g~~~i~~l~~~~-~~i~~DlK~~DIg~tv~~~~~~~~~~g 76 (216)
T cd04725 2 IVALDPPDEEFALALIDALG-PY--VCAVKVGL-ELFEAAGPEIVKELRELG-FLVFLDLKLGDIPNTVAAAAEALLGLG 76 (216)
T ss_pred EEEeCCCCHHHHHHHHHhcC-Cc--ccEEEECH-HHHHhcCHHHHHHHHHCC-CcEEEEeecCchHHHHHHHHHHHHhcC
Confidence 57899999999998888763 32 45555333 443 79999999999864 899999999998764 44577899
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC-CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN-PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKK 212 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~-p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~k 212 (281)
+|++|+|.-.. .+.++.+++..++++.++-+... .+..-+.+++.... +..+.-+.-.-|..|--..+.-.+.
T Consensus 77 ad~~Tvh~~~G-~~~l~~~~~~~~~~~~~~~~v~~lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~~~~ 155 (216)
T cd04725 77 ADAVTVHPYGG-SDMLKAALEAAEEKGKGLFAVTVLSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATEPEA 155 (216)
T ss_pred CCEEEECCcCC-HHHHHHHHHHHhccCCeEEEEEcCCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcchHH
Confidence 99999999873 67788888888877765544322 22233333221110 0000001111121121111112233
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCChh----------cHHHHHHcCCcEEEEcccccCCCCHHHHHHH
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVGPK----------NAYKVIEAGANALVAGSAVFGAKDYAEAIKG 269 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~e----------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~ 269 (281)
+ ++.. +.++. .+-+||+++ +..+++++|++++++|++|+.++||.+.+++
T Consensus 156 i---~~~~---~~~~~-~ltPGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~~~~~ 215 (216)
T cd04725 156 L---RRAL---GPDFL-ILTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEA 215 (216)
T ss_pred H---HHhh---CCCCe-EEcCCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence 3 2222 22455 589999999 9999999999999999999999999988765
No 48
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=99.37 E-value=2.6e-13 Score=121.27 Aligned_cols=195 Identities=22% Similarity=0.276 Sum_probs=127.6
Q ss_pred EEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccc-cCC----HHHHHHcCcCCCCCeeEEEEecChhhHHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNI-TIG----PLVVDALRPVTDLPLDVHLMIVEPEQRVPDF 134 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-~~G----~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~ 134 (281)
.-.+++|+.++++.++.+++.+ ++++.+ | .|.+ .+| ++.++.+|+.. +++.+|+|+.|...++..+
T Consensus 2 ~L~vALD~~~~~~a~~i~~~~~~~v~~iKv----G--~~l~~~~G~~~l~~~i~~l~~~~-~~I~~D~K~~Dig~t~~~~ 74 (226)
T PF00215_consen 2 KLQVALDPTDLEEALRIADELGDYVDIIKV----G--TPLFLAYGLEALPEIIEELKERG-KPIFLDLKLGDIGNTVARY 74 (226)
T ss_dssp EEEEEE-SSSHHHHHHHHHHHGGGSSEEEE----E--HHHHHHHCHHHHHHHHHHHHHTT-SEEEEEEEE-SSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHhcCcceEEEE----C--hHHHhcCChhhHHHHHHHHHHhc-CCEeeeeeecccchHHHHH
Confidence 3467899999998888777653 666666 4 3444 899 99999999875 9999999999998765433
Q ss_pred -------HHcCCCEEEEcccccccccHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhcc-----CCEEEEEeecCCC
Q 023494 135 -------IKAGADIVSVHCEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV-----VDLVLIMSVNPGF 200 (281)
Q Consensus 135 -------~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~ 200 (281)
.+.|||++|+|+... .++++.+++.++++| ..+++.+-.+...+.+..+... ++...-+...-|.
T Consensus 75 ~~~~~~~~~~gaD~vTv~~~~G-~~tl~~~~~~a~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 153 (226)
T PF00215_consen 75 AEAGFAAFELGADAVTVHPFAG-DDTLEAAVKAAKKHGRKGVFVVDLLSNPDSEDLQDLGLGVDQEIVHRAADLAAKAGV 153 (226)
T ss_dssp HHSCHHHHTTTESEEEEEGTTH-HHHHHHHHHHHHHTTESEEEEEESTTSTTHHHHHHHHCTHHHHHHHHHHHHHHHTTE
T ss_pred HHHhhhhhcCCCcEEEEeccCC-HHHHHHHHHHHhccCCcceEEEEecCCCCHHHHHhhhcccHHHHHHHHHHhhccccc
Confidence 578999999999974 778999999999998 4455555444444444431100 0000000000111
Q ss_pred CC---CccchhHHHHHHHH----HHHhhhcCCCC-eEEEecCCChhcHHHHHH-cCCcEEEEcccccCCCCHHHHHHHH
Q 023494 201 GG---QSFIESQVKKISDL----RRMCLEKGVNP-WIEVDGGVGPKNAYKVIE-AGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 201 ~G---Q~f~~~~l~kI~~l----r~l~~~~~~~~-~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
.| +...+ .+++. ..+.+ |.+. ...+.||++..+.+.+.. .|+|++|+||+|++++||.++++++
T Consensus 154 ~G~v~~~~~~----~~~~~~~~~~~l~P--Gi~~~~~~~~~~~~~~~~~~~~~~~g~d~iiVGR~I~~a~dp~~aa~~i 226 (226)
T PF00215_consen 154 DGIVCSATEP----AIRKAGPNFKILTP--GIGAIQGAVAGGQKRATTPAAAKQAGADIIIVGRAITKAEDPREAAEEI 226 (226)
T ss_dssp EEEEETTTCH----HHHHHTTTSEEEEE--SBSSSTCEECSSHHCHHHHHHHHHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred cCcccccccc----cccccccchhhccC--CCCcccccCcccccccccHHHHHhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence 11 11111 22222 11111 2333 567888888887877765 8999999999999999999998875
No 49
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.36 E-value=7.1e-11 Score=104.63 Aligned_cols=188 Identities=20% Similarity=0.209 Sum_probs=135.1
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CC-CCeeEEEEecChhhHHHHHHH
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TD-LPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~-~~idaHLmv~dp~~~i~~~~~ 136 (281)
.+.|-+-..|..++.+.++.+.++|++.+++-. ++ | -..+.++.+++. .+ ..+-+.-. .+++ .++.+.+
T Consensus 11 ~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~-~~---~---~~~~~i~~l~~~~~~~~~iGaGTV-~~~~-~~~~a~~ 81 (206)
T PRK09140 11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPL-NS---P---DPFDSIAALVKALGDRALIGAGTV-LSPE-QVDRLAD 81 (206)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeC-CC---c---cHHHHHHHHHHHcCCCcEEeEEec-CCHH-HHHHHHH
Confidence 466777777888888999999999999999952 22 2 245678877654 32 33333322 2323 6788999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+||++++..... .++++..++.|..++.-. .|+-|..+.+-..+|||-+ .|. ..+ .++.|+.+
T Consensus 82 aGA~fivsp~~~------~~v~~~~~~~~~~~~~G~--~t~~E~~~A~~~Gad~vk~---Fpa---~~~---G~~~l~~l 144 (206)
T PRK09140 82 AGGRLIVTPNTD------PEVIRRAVALGMVVMPGV--ATPTEAFAALRAGAQALKL---FPA---SQL---GPAGIKAL 144 (206)
T ss_pred cCCCEEECCCCC------HHHHHHHHHCCCcEEccc--CCHHHHHHHHHcCCCEEEE---CCC---CCC---CHHHHHHH
Confidence 999999988763 256777788888777764 4565545555556899975 452 122 24556666
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC----CCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA----KDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a----~dp~~~~~~l~~~~~ 275 (281)
+..++ .++++...||||++|+.++.++|+|.+.+||+||++ +++++.++++++.++
T Consensus 145 ~~~~~---~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~~~~ 204 (206)
T PRK09140 145 RAVLP---PDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAFVAAYR 204 (206)
T ss_pred HhhcC---CCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhcccccChHHHHHHHHHHHHHHh
Confidence 66653 137899999999999999999999999999999986 778888888877654
No 50
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.34 E-value=1e-11 Score=123.15 Aligned_cols=186 Identities=19% Similarity=0.151 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
.+.+.++.+.+.|++++|++..+- +. ..-.+.++++++.+ ....+.|+++| +++.+.+.|+|+||+..+..
T Consensus 308 ~~~~~l~~~l~~Gv~~vqlR~k~~---~~-~~~~~~a~~l~~~~-~~~~~~liind---~~~lA~~~~adGvHl~~~d~- 378 (502)
T PLN02898 308 STVDAVRAAIEGGATIVQLREKEA---ET-REFIEEAKACLAIC-RSYGVPLLIND---RVDVALACDADGVHLGQSDM- 378 (502)
T ss_pred hHHHHHHHHHHcCCCEEEEccCCC---CH-HHHHHHHHHHHHHH-HHhCCEEEEcC---hHHHHHhcCCCEEEeChHhc-
Confidence 467789999999999999986653 21 11123444444443 22356789998 88889999999999987642
Q ss_pred cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEE
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~ 230 (281)
.. ...+.....+..+|+..+ +.-+.....-..+|||.+..+.|...-....+..++.++++.+.. ++++.
T Consensus 379 --~~-~~~r~~~~~~~~iG~S~h--~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~-----~~Pv~ 448 (502)
T PLN02898 379 --PV-RLARSLLGPGKIIGVSCK--TPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS-----KLPVV 448 (502)
T ss_pred --CH-HHHHHhcCCCCEEEEeCC--CHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC-----CCCEE
Confidence 12 122222223566777764 343333333456999999888876543223455677777776543 47899
Q ss_pred EecCCChhcHHHHHHcCCc---EEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 231 VDGGVGPKNAYKVIEAGAN---ALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 231 VDGGI~~e~i~~~~~aGAD---~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
.-|||+++|+.++.++|++ .+.++|+|++++||.++++++++.+.
T Consensus 449 aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~ 496 (502)
T PLN02898 449 AIGGISASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILT 496 (502)
T ss_pred EECCCCHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999988654
No 51
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.34 E-value=1.2e-11 Score=128.28 Aligned_cols=200 Identities=17% Similarity=0.215 Sum_probs=139.2
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
+.|++.-.+.+...+.+.++.+.++|+++|+++..+. +.-.+ ...++++++.+ ....+.++++| +++.+.++
T Consensus 7 y~It~~~~~~~~~~~~~~l~~~l~~g~~~iqlR~K~~---~~~~~-~~~a~~l~~l~-~~~~~~liind---~~~la~~~ 78 (755)
T PRK09517 7 YLVTDPVLGGGPEKVAGIVDSAISGGVSVVQLRDKNA---GVEDV-RAAAKELKELC-DARGVALVVND---RLDVAVEL 78 (755)
T ss_pred EEEECCccccCcccHHHHHHHHHhcCCCEEEEeCCCC---CHHHH-HHHHHHHHHHH-HHhCCeEEEeC---hHHHHHHc
Confidence 4466666555545677888899999999999996664 21111 23455555443 22357789999 78888899
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHh---hc-----cCCEEEEEeecCCCCCCcc-chh
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV---LD-----VVDLVLIMSVNPGFGGQSF-IES 208 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~---l~-----~vD~IlvmsV~pG~~GQ~f-~~~ 208 (281)
|+| ||+..+.. .+ +..+.....+..+|++.+ ..+.++.. .. .+|||.+..+.|..+...- .+-
T Consensus 79 ~~d-VHlg~~dl---~~-~~~r~~~~~~~~iG~S~h---~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~l 150 (755)
T PRK09517 79 GLH-VHIGQGDT---PY-TQARRLLPAHLELGLTIE---TLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPAL 150 (755)
T ss_pred CCC-eecCCCcC---CH-HHHHHhcCCCCEEEEeCC---CHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCC
Confidence 999 66666532 12 333333334567788765 33333322 12 2899999999886543322 234
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
.++.++++++.... ..+++.+-|||+++|++++.++||+.+.+.|+|++++||.++++++++.++
T Consensus 151 G~~~l~~~~~~~~~--~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~~~~ 215 (755)
T PRK09517 151 GVDGIAEIAAVAQD--HGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRTAFQ 215 (755)
T ss_pred CHHHHHHHHHhcCc--CCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHHHHH
Confidence 67788888877642 237899999999999999999999999999999999999999999887543
No 52
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.30 E-value=2.8e-10 Score=101.19 Aligned_cols=189 Identities=21% Similarity=0.263 Sum_probs=128.3
Q ss_pred CceEeEEEeccCccCH----HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEE--------e
Q 023494 57 DIIVSPSILSANFAKL----GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM--------I 124 (281)
Q Consensus 57 ~~~i~pSila~D~~~l----~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLm--------v 124 (281)
.+++|--....|+.+. .+..+.+.++|+..+.++ +++.++.+|+.+++|+..-+. .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~------------~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~ 73 (221)
T PRK01130 6 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRAN------------GVEDIKAIRAVVDVPIIGIIKRDYPDSEVY 73 (221)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC------------CHHHHHHHHHhCCCCEEEEEecCCCCCCce
Confidence 5677777778888753 455566778898877652 267899998888888763221 1
Q ss_pred cCh-hhHHHHHHHcCCCEEEEccccc--c-cccHHHHHHHHHH-cCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecC
Q 023494 125 VEP-EQRVPDFIKAGADIVSVHCEQS--S-TIHLHRTLNQIKD-LGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNP 198 (281)
Q Consensus 125 ~dp-~~~i~~~~~aGAd~Itvh~Ea~--~-~~~i~~~l~~ik~-~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~p 198 (281)
.++ .++++.+.++|||.|.+-.-.. + .++..++++.+++ .|+.+.... ++.+++..... .+|+|.+- .-
T Consensus 74 ~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v---~t~ee~~~a~~~G~d~i~~~--~~ 148 (221)
T PRK01130 74 ITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADC---STLEEGLAAQKLGFDFIGTT--LS 148 (221)
T ss_pred ECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeC---CCHHHHHHHHHcCCCEEEcC--Cc
Confidence 222 2468889999999887643210 0 1567889999999 777766543 35566655544 38988541 11
Q ss_pred CCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHHHH
Q 023494 199 GFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 199 G~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~ 267 (281)
|..+.. ..+..++.++++++.. +.++.+.||| +++++.++.++|||.+++||+|++.+++.+..
T Consensus 149 g~t~~~~~~~~~~~~~i~~i~~~~-----~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~~~~~ 215 (221)
T PRK01130 149 GYTEETKKPEEPDFALLKELLKAV-----GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEITKWF 215 (221)
T ss_pred eeecCCCCCCCcCHHHHHHHHHhC-----CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHHHHHH
Confidence 333221 2233456677776654 3689999999 59999999999999999999999866655443
No 53
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=99.25 E-value=5.4e-11 Score=107.59 Aligned_cols=201 Identities=18% Similarity=0.212 Sum_probs=134.4
Q ss_pred EEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhh----HHHHHHHc
Q 023494 63 SILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDFIKA 137 (281)
Q Consensus 63 Sila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~----~i~~~~~a 137 (281)
-++++|+.+.++.++.+.+.+ + .+|...-++ |.+ .+|+.+++++++.. .++.+|||..|... +.+.+.+.
T Consensus 14 livaLD~~~~~~~~~~~~~~~-~--~~~~~Kvg~-~l~~~~g~~~~~el~~~~-~~VflDlK~~DIpnT~~~~~~~~~~~ 88 (240)
T COG0284 14 LIVALDVPTEEEALAFVDKLG-P--TVDFVKVGK-PLVAFFGADILEELKARG-KKVFLDLKLADIPNTVALAAKAAADL 88 (240)
T ss_pred eEEEECCCCHHHHHHHHHHhh-c--cccEEEEch-HHHHhccHHHHHHHHHhC-CceEEeeecccchHHHHHHHHHhhhc
Confidence 688999999998877777653 2 233333233 544 88999999998864 48999999999864 45566788
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcC-CcEEEEECCCCCHHHHHHhh---ccCCEEEEE---eecCCCCCCccchhHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNPATSLSAIECVL---DVVDLVLIM---SVNPGFGGQSFIESQV 210 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G-~k~Glai~p~t~ie~~~~~l---~~vD~Ilvm---sV~pG~~GQ~f~~~~l 210 (281)
|+|++++|.... .+.+..+.+..+++| .-.+++.+++..-+.+...- +.-++|+-+ .-..|..|---.++
T Consensus 89 g~d~vtvH~~~G-~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~~-- 165 (240)
T COG0284 89 GADAVTVHAFGG-FDMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAE-- 165 (240)
T ss_pred CCcEEEEeCcCC-HHHHHHHHHHHhhcCceEEEEEeCCCchhhhhhhccccchHHHHHHHHHHHhccCCceEEEcCHH--
Confidence 999999998863 556788888888888 44556666554443211110 001122211 12234444222233
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCCh------h----cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVGP------K----NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~~------e----~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
..+++|+... .++.| +-.||.+ + |..+.+++|+|.+|+|+.|+.++||.+.++++.+.+..
T Consensus 166 -e~~~ir~~~g---~~~~i-ltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~~ 236 (240)
T COG0284 166 -EVAAIREILG---PDFLI-LTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPITQAGDPVAAARAIAREIAR 236 (240)
T ss_pred -HHHHHHHhcC---CCcEE-ECCCcCcCcCCCCcccccCHHHHHhcCCCEEEEChhhhcCCChHHHHHHHHHHHHH
Confidence 3444444432 34544 7999998 3 47788899999999999999999999999988876543
No 54
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=99.25 E-value=2e-10 Score=100.17 Aligned_cols=171 Identities=16% Similarity=0.110 Sum_probs=119.7
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-.-|..+..+.++.+.++|+++++++..+.. ..+.++.+++. ++..+-+...+.+ ..++.+.++
T Consensus 5 ~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~-------~~~~i~~l~~~~~~~~iGag~v~~~--~~~~~a~~~ 75 (190)
T cd00452 5 PLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPG-------ALEAIRALRKEFPEALIGAGTVLTP--EQADAAIAA 75 (190)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChh-------HHHHHHHHHHHCCCCEEEEEeCCCH--HHHHHHHHc
Confidence 3556666667778888889999999999999976542 34578888775 3455565554422 267889999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|||.++..... .++++..+++|..+-+-+. |+-|..+.+-..+|||.+ +|. .+...+-++.++
T Consensus 76 Ga~~i~~p~~~------~~~~~~~~~~~~~~i~gv~--t~~e~~~A~~~Gad~i~~---~p~------~~~g~~~~~~l~ 138 (190)
T cd00452 76 GAQFIVSPGLD------PEVVKAANRAGIPLLPGVA--TPTEIMQALELGADIVKL---FPA------EAVGPAYIKALK 138 (190)
T ss_pred CCCEEEcCCCC------HHHHHHHHHcCCcEECCcC--CHHHHHHHHHCCCCEEEE---cCC------cccCHHHHHHHH
Confidence 99999766542 3577888888876544332 444433333345999986 442 112344455555
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+..+ ++++.+-|||+++|+.++.++|+|.+++||.||+
T Consensus 139 ~~~~----~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 139 GPFP----QVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred hhCC----CCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcch
Confidence 5432 3789999999999999999999999999999993
No 55
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.22 E-value=8e-10 Score=96.44 Aligned_cols=172 Identities=16% Similarity=0.094 Sum_probs=120.9
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCC-CCe-eEEEEecChhhHHHHHHH
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD-LPL-DVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~-~~i-daHLmv~dp~~~i~~~~~ 136 (281)
.+.|-+-.-|..+..+.++.+.++|++++++...+-. ..+.++.+++... ... ...+++.| .++.+.+
T Consensus 13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~-------~~e~~~~~~~~~~~~~~g~gtvl~~d---~~~~A~~ 82 (187)
T PRK07455 13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQ-------PAELISQLREKLPECIIGTGTILTLE---DLEEAIA 82 (187)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCC-------HHHHHHHHHHhCCCcEEeEEEEEcHH---HHHHHHH
Confidence 4777777778888888899999999999999754431 2455666555422 212 23444444 8899999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+|||+++..... .+.++..+.+++..- +...|+-|..+.+-..+|||-+ +|... ...++.++.+
T Consensus 83 ~gAdgv~~p~~~------~~~~~~~~~~~~~~i--~G~~t~~e~~~A~~~Gadyv~~---Fpt~~-----~~G~~~l~~~ 146 (187)
T PRK07455 83 AGAQFCFTPHVD------PELIEAAVAQDIPII--PGALTPTEIVTAWQAGASCVKV---FPVQA-----VGGADYIKSL 146 (187)
T ss_pred cCCCEEECCCCC------HHHHHHHHHcCCCEE--cCcCCHHHHHHHHHCCCCEEEE---CcCCc-----ccCHHHHHHH
Confidence 999999887763 234555566666432 2245666655555567999986 56421 1235556666
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+..++ ++++...|||+++|++++.++|++.+.+||+|++.
T Consensus 147 ~~~~~----~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~~ 186 (187)
T PRK07455 147 QGPLG----HIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFPK 186 (187)
T ss_pred HhhCC----CCcEEEeCCCCHHHHHHHHHCCCeEEEEehhcccC
Confidence 66553 37899999999999999999999999999999975
No 56
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=99.21 E-value=1.7e-09 Score=95.04 Aligned_cols=169 Identities=20% Similarity=0.195 Sum_probs=113.1
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCC-CeeEEEEecChhh-HHHHHHHcCCCEEEEccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL-PLDVHLMIVEPEQ-RVPDFIKAGADIVSVHCEQSST 151 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~-~idaHLmv~dp~~-~i~~~~~aGAd~Itvh~Ea~~~ 151 (281)
+.++.+.+.|+|++++...+. .| -...++..+.|++.+.. ...|-+.+++... ..+.+.+.|+|+|++|...
T Consensus 10 ed~~~a~~~Gvd~ig~i~~~~--s~-R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e--- 83 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPK--SP-RYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE--- 83 (203)
T ss_pred HHHHHHHHcCCCEEEEecCCC--CC-CCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC---
Confidence 457788889999999965442 12 13457788888776432 3456667776543 4556678999999999863
Q ss_pred ccHHHHHHHHHH-cCCcEE--EEECCCCCHHHHHHhhccCCEEEEEeecCCC---CCCccchhHHHHHHHHHHHhhhcCC
Q 023494 152 IHLHRTLNQIKD-LGAKAG--VVLNPATSLSAIECVLDVVDLVLIMSVNPGF---GGQSFIESQVKKISDLRRMCLEKGV 225 (281)
Q Consensus 152 ~~i~~~l~~ik~-~G~k~G--lai~p~t~ie~~~~~l~~vD~IlvmsV~pG~---~GQ~f~~~~l~kI~~lr~l~~~~~~ 225 (281)
++ +.++.+|+ .|.++. +.++.++..+....+...+||+++=+..++. .|+.+.-+.+. +++ .
T Consensus 84 -~~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~---~~~-------~ 151 (203)
T cd00405 84 -SP-EYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLR---GLA-------S 151 (203)
T ss_pred -CH-HHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhh---ccc-------c
Confidence 12 34555555 366665 4444444444334555678999875543322 35666544443 332 1
Q ss_pred CCeEEEecCCChhcHHHHHHcC-CcEEEEcccccCC
Q 023494 226 NPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVFGA 260 (281)
Q Consensus 226 ~~~I~VDGGI~~e~i~~~~~aG-AD~~VvGSaIf~a 260 (281)
..++.+.||||++|+.++++.| ++.+.++|+|..+
T Consensus 152 ~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 152 RKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred CCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCC
Confidence 3688899999999999999999 9999999999976
No 57
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.17 E-value=1.8e-09 Score=95.91 Aligned_cols=193 Identities=21% Similarity=0.285 Sum_probs=123.6
Q ss_pred ccCCCCCceEeEEEeccCcc----CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeE----EE
Q 023494 51 DKFSKSDIIVSPSILSANFA----KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDV----HL 122 (281)
Q Consensus 51 ~~~~~~~~~i~pSila~D~~----~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~ida----HL 122 (281)
++++. -+++|.-....++. ...+..+.+.++|+..+.+ + +++.++.+|+.+++|+.. |+
T Consensus 5 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~----~--------~~~~~~~i~~~~~iPil~~~~~~~ 71 (219)
T cd04729 5 EQLKG-GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA----N--------GVEDIRAIRARVDLPIIGLIKRDY 71 (219)
T ss_pred HHhcC-CeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc----C--------CHHHHHHHHHhCCCCEEEEEecCC
Confidence 34444 45666666666555 4667777888899876542 1 346788888777788753 21
Q ss_pred -----EecCh-hhHHHHHHHcCCCEEEEccccc--c-cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEE
Q 023494 123 -----MIVEP-EQRVPDFIKAGADIVSVHCEQS--S-TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 193 (281)
Q Consensus 123 -----mv~dp-~~~i~~~~~aGAd~Itvh~Ea~--~-~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilv 193 (281)
.+ +| ...++.+.++|||.|.+-.-.. + .+++.+++++++++| ..-+.....|+-+.....-..+|+|.+
T Consensus 72 ~~~~~~i-g~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 72 PDSEVYI-TPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAKLGFDIIGT 149 (219)
T ss_pred CCCCcee-CCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHHHHHcCCCEEEc
Confidence 11 12 1257888999999888743210 0 136889999999998 333333444444333322335898743
Q ss_pred EeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHH
Q 023494 194 MSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAE 265 (281)
Q Consensus 194 msV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~ 265 (281)
- .-|+.++. .....++-++++++.. +.++.+.||| +++++.++.++|||.+++||+|++.+||..
T Consensus 150 ~--~~g~t~~~~~~~~~~~~~l~~i~~~~-----~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~~~ 217 (219)
T cd04729 150 T--LSGYTEETAKTEDPDFELLKELRKAL-----GIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEHITG 217 (219)
T ss_pred c--CccccccccCCCCCCHHHHHHHHHhc-----CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhHhh
Confidence 1 12443321 1122356666666654 3689999999 599999999999999999999999888753
No 58
>PRK08999 hypothetical protein; Provisional
Probab=99.14 E-value=3.8e-10 Score=105.07 Aligned_cols=179 Identities=14% Similarity=0.081 Sum_probs=119.3
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
+.|+|.-.+.+ ..+.+.++.+.+.|++++|+...+-. ...-...++++++.+ ...++.|.++| +++.+.+.
T Consensus 133 y~it~~~~~~~-~~~~~~~~~~l~~g~~~vqlR~k~~~----~~~~~~~~~~l~~~~-~~~~~~liind---~~~la~~~ 203 (312)
T PRK08999 133 YLITPEGEDGD-AAFLARLERALAAGIRLIQLRAPQLP----PAAYRALARAALGLC-RRAGAQLLLNG---DPELAEDL 203 (312)
T ss_pred EEEECcccccc-HHHHHHHHHHHHCCCcEEEEeCCCCC----HHHHHHHHHHHHHHH-HHhCCEEEEEC---cHHHHHhc
Confidence 34555433321 23556777777899999999876642 111134455555543 22356778888 78889999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
|+|+||+..... . ..+. +. ...+..+|++.+ ..+.+.+.. ..+|||.+..+.|..+-....+..++.++++
T Consensus 204 ~~~GvHl~~~d~--~-~~~~-r~-~~~~~~ig~S~h---~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~ 275 (312)
T PRK08999 204 GADGVHLTSAQL--A-ALAA-RP-LPAGRWVAASCH---DAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAAL 275 (312)
T ss_pred CCCEEEcChhhc--C-hHhh-cc-CCCCCEEEEecC---CHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHH
Confidence 999999998752 1 1111 11 123456777764 333344432 3599999998887654322345567777777
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
++.. ++++.+-|||+++|+.++.++|+|.+.+-|+|+
T Consensus 276 ~~~~-----~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~~~~ 312 (312)
T PRK08999 276 IAGV-----PLPVYALGGLGPGDLEEAREHGAQGIAGIRGLW 312 (312)
T ss_pred HHhC-----CCCEEEECCCCHHHHHHHHHhCCCEEEEEEEeC
Confidence 7654 478999999999999999999999999999875
No 59
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.14 E-value=1.7e-09 Score=96.51 Aligned_cols=143 Identities=15% Similarity=0.249 Sum_probs=103.4
Q ss_pred HHHHHcCcCCCCCeeEEEEecCh----hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH
Q 023494 105 LVVDALRPVTDLPLDVHLMIVEP----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 180 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv~dp----~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~ 180 (281)
+.++.+++..+.++.+-++..++ .++++.+.++|+|.|.+|... ..+.++.+++.++.++..+.+ .+.
T Consensus 43 ~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~-----~~~~~~~~~~~~i~~i~~v~~---~~~ 114 (236)
T cd04730 43 AEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFGP-----PAEVVERLKAAGIKVIPTVTS---VEE 114 (236)
T ss_pred HHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCCC-----CHHHHHHHHHcCCEEEEeCCC---HHH
Confidence 45566665444577888898763 356888999999999998652 356788888889888876643 344
Q ss_pred HHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh-hcHHHHHHcCCcEEEEccccc
Q 023494 181 IECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 181 ~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~~~~aGAD~~VvGSaIf 258 (281)
++.+.+ .+|+|.+.+..+|..+..+....++.++++++.. +.++.+.|||+. +++.+++++|||.+++||+++
T Consensus 115 ~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-----~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~ 189 (236)
T cd04730 115 ARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-----DIPVIAAGGIADGRGIAAALALGADGVQMGTRFL 189 (236)
T ss_pred HHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-----CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhh
Confidence 454433 4899988665444333333234466677776654 368999999996 999999999999999999998
Q ss_pred CC
Q 023494 259 GA 260 (281)
Q Consensus 259 ~a 260 (281)
+.
T Consensus 190 ~~ 191 (236)
T cd04730 190 AT 191 (236)
T ss_pred cC
Confidence 75
No 60
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.11 E-value=7.8e-09 Score=92.19 Aligned_cols=179 Identities=17% Similarity=0.221 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.+.+.|+|++|+==.|+.+. ......+.++++++..+.|+.+.=-+.+++ .++.+.++|||.|.+..+.
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~-~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e-~~~~~~~~Gad~vvigs~~-- 105 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKG-GEPVNLELIEEIVKAVGIPVQVGGGIRSLE-DIERLLDLGVSRVIIGTAA-- 105 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCcccc-CCCCCHHHHHHHHHhcCCCEEEeCCcCCHH-HHHHHHHcCCCEEEECchH--
Confidence 334445566678999998854444332 234567889999887777777766667766 4567778999999988774
Q ss_pred cccHHHHHHHHHHcCC-cEEEEEC---------------CCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHH
Q 023494 151 TIHLHRTLNQIKDLGA-KAGVVLN---------------PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~-k~Glai~---------------p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
..++..+.+..++.|. ++.+++. +.++.+.++.+.+. +|.++++.+...-..+. ..++.|
T Consensus 106 l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g---~~~~~i 182 (234)
T cd04732 106 VKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG---PNFELY 182 (234)
T ss_pred HhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC---CCHHHH
Confidence 3556556666667775 5555542 33445556666554 89999988754211111 224556
Q ss_pred HHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
+++++.. ++++.+.|||+ .+++.++.+.|+|.+++||+++...
T Consensus 183 ~~i~~~~-----~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 183 KELAAAT-----GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred HHHHHhc-----CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence 6666543 46899999999 7789999999999999999998654
No 61
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.10 E-value=6e-09 Score=92.81 Aligned_cols=187 Identities=17% Similarity=0.097 Sum_probs=130.2
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC----CCCeeEEEEecChhhHHHHH
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT----DLPLDVHLMIVEPEQRVPDF 134 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t----~~~idaHLmv~dp~~~i~~~ 134 (281)
.+.|-+-.-|..+..+..+.|.++|+..+++ +| +..-..+.++.+++.. +..+-+-- |.+++ -++.+
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEi-----t~--~~~~a~~~i~~l~~~~~~~p~~~vGaGT-V~~~~-~~~~a 84 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGIKAIEV-----TY--TNPFASEVIKELVELYKDDPEVLIGAGT-VLDAV-TARLA 84 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE-----EC--CCccHHHHHHHHHHHcCCCCCeEEeeee-CCCHH-HHHHH
Confidence 4777777778888888889999999999988 22 2334667888887642 23333322 24544 56788
Q ss_pred HHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
.++||+++.-+.- -.++++.++++|+-.---. .|+-|....+-..+|+|-+ +|.- .+ .++.|+
T Consensus 85 ~~aGA~FivsP~~------~~~v~~~~~~~~i~~iPG~--~T~~E~~~A~~~Gad~vkl---FPa~---~~---G~~~ik 147 (213)
T PRK06552 85 ILAGAQFIVSPSF------NRETAKICNLYQIPYLPGC--MTVTEIVTALEAGSEIVKL---FPGS---TL---GPSFIK 147 (213)
T ss_pred HHcCCCEEECCCC------CHHHHHHHHHcCCCEECCc--CCHHHHHHHHHcCCCEEEE---CCcc---cC---CHHHHH
Confidence 9999999875543 2467888888886554322 2455555555556999976 5521 12 244466
Q ss_pred HHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC------CCHHHHHHHHHHhcC
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA------KDYAEAIKGIKTSKR 275 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a------~dp~~~~~~l~~~~~ 275 (281)
.++..++ ++++...||||++|+.+++++|++.+.+||.|+.. +++++.++++.+.++
T Consensus 148 ~l~~~~p----~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 148 AIKGPLP----QVNVMVTGGVNLDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred HHhhhCC----CCEEEEECCCCHHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 6666554 37899999999999999999999999999999976 456666666665443
No 62
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.10 E-value=4.3e-09 Score=96.56 Aligned_cols=190 Identities=19% Similarity=0.253 Sum_probs=125.7
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCccccc---------ccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---------~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
+|..+- ++-+.++++|+= -||--.-+|. -.-+|+.|++|++..++|+....+... ..-++.+.++
T Consensus 15 mdv~~~-eqa~iae~aga~----avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~kigh-~~Ea~~L~~~ 88 (287)
T TIGR00343 15 MDVVNP-EQAKIAEEAGAV----AVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVRIGH-FVEAQILEAL 88 (287)
T ss_pred EEeCCH-HHHHHHHHcCce----EEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEeeccH-HHHHHHHHHc
Confidence 466665 456788888873 3443333442 245899999999988899999777665 2235567899
Q ss_pred CCCEEEEccccccccc-HHHHHHHHHHcCCcEEEEECCCCCHHH-HHHhhccCCEEEEEeecCCCCCC------------
Q 023494 138 GADIVSVHCEQSSTIH-LHRTLNQIKDLGAKAGVVLNPATSLSA-IECVLDVVDLVLIMSVNPGFGGQ------------ 203 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~-i~~~l~~ik~~G~k~Glai~p~t~ie~-~~~~l~~vD~IlvmsV~pG~~GQ------------ 203 (281)
|+|+| .|+. ..+ ..+....+|.. .++ +.++....+++ +..+-..+|+|-- +-+.| +|.
T Consensus 89 GvDiI---DeTe-~lrPade~~~~~K~~-f~v-pfmad~~~l~EAlrai~~GadmI~T-t~e~g-Tg~v~~av~hlr~~~ 160 (287)
T TIGR00343 89 GVDYI---DESE-VLTPADWTFHIDKKK-FKV-PFVCGARDLGEALRRINEGAAMIRT-KGEAG-TGNIVEAVRHMRKIN 160 (287)
T ss_pred CCCEE---EccC-CCCcHHHHHHHHHHH-cCC-CEEccCCCHHHHHHHHHCCCCEEec-cccCC-CccHHHHHHHHHHHH
Confidence 99999 3432 222 45666666653 222 23344445544 4445556898842 22333 332
Q ss_pred -------cc------------chhHHHHHHHHHHHhhhcCCCCeEE--EecCC-ChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 204 -------SF------------IESQVKKISDLRRMCLEKGVNPWIE--VDGGV-GPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 204 -------~f------------~~~~l~kI~~lr~l~~~~~~~~~I~--VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
.. ....++.|+++++.. ++++. ..||| +++++..+.++|||.+++||+||+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~-----~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~ 235 (287)
T TIGR00343 161 EEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG-----KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS 235 (287)
T ss_pred HHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhC-----CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCC
Confidence 00 112345555555432 36787 89999 89999999999999999999999999
Q ss_pred CHHHHHHHHHHhcC
Q 023494 262 DYAEAIKGIKTSKR 275 (281)
Q Consensus 262 dp~~~~~~l~~~~~ 275 (281)
||.+.++++.+.++
T Consensus 236 dP~~~akafv~ai~ 249 (287)
T TIGR00343 236 NPEKLAKAIVEATT 249 (287)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
No 63
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.06 E-value=9.9e-09 Score=91.35 Aligned_cols=174 Identities=14% Similarity=0.069 Sum_probs=123.9
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-CCCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-VTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-..|..+..+..+.+.+.|++.+++- -+...+.+.|+.+|+ +++..+-+...+++ .-.+.+.++
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEit-------l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~--~~a~~a~~a 86 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVT-------LRTPAALEAIRLIAKEVPEALIGAGTVLNP--EQLAQAIEA 86 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEe-------cCCccHHHHHHHHHHHCCCCEEEEeeccCH--HHHHHHHHc
Confidence 47777887788888888899999999999983 234468899999986 47778888877766 357889999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
||++++.+.-+ . ++++.++++|+..-- .-.||-|...-+--.+|+|=+ .|.- .+. ..+-|+.++
T Consensus 87 GA~FivsP~~~-----~-~vi~~a~~~~i~~iP--G~~TptEi~~a~~~Ga~~vKl---FPa~---~~g--g~~~lk~l~ 150 (212)
T PRK05718 87 GAQFIVSPGLT-----P-PLLKAAQEGPIPLIP--GVSTPSELMLGMELGLRTFKF---FPAE---ASG--GVKMLKALA 150 (212)
T ss_pred CCCEEECCCCC-----H-HHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEEEE---ccch---hcc--CHHHHHHHh
Confidence 99999988763 2 678888876654321 112555533333335788755 5531 111 234456666
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
..++ +.++.+.|||+++|+++++++|+-.++.||.+|+.+
T Consensus 151 ~p~p----~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~L~~~~ 190 (212)
T PRK05718 151 GPFP----DVRFCPTGGISPANYRDYLALPNVLCIGGSWMVPKD 190 (212)
T ss_pred ccCC----CCeEEEeCCCCHHHHHHHHhCCCEEEEEChHhCCcc
Confidence 6554 478999999999999999999966666678888643
No 64
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.04 E-value=1.8e-08 Score=90.45 Aligned_cols=185 Identities=19% Similarity=0.207 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++.+.+.|++++|+-=.|+.. ....-....++++.+.++.|+.++==+.+++ .++.+.++|||.|++..+.
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~-~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~-~~~~~~~~Ga~~v~iGs~~-- 108 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAF-EGERKNAEAIEKIIEAVGVPVQLGGGIRSAE-DAASLLDLGVDRVILGTAA-- 108 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhh-cCCcccHHHHHHHHHHcCCcEEEcCCcCCHH-HHHHHHHcCCCEEEEChHH--
Confidence 55666777888999999997666522 1222345677777665556666654445543 4677788999999998875
Q ss_pred cccHHHHHHHHHHcCC-cE--EEEEC----------C--C-CCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHH
Q 023494 151 TIHLHRTLNQIKDLGA-KA--GVVLN----------P--A-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~-k~--Glai~----------p--~-t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
..++..+.+..+.+|. ++ ++.+. . . .+.+..+.+.. .++.|++..+.+.-.. .+..++.+
T Consensus 109 ~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~---~g~~~~~i 185 (241)
T PRK13585 109 VENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLL---EGVNTEPV 185 (241)
T ss_pred hhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCc---CCCCHHHH
Confidence 3445445555555553 33 34332 1 1 34555555544 3899998877542111 11234455
Q ss_pred HHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC-CHHHHH
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK-DYAEAI 267 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~-dp~~~~ 267 (281)
+++++.. ++++.+-|||+ ++++..+.+.|++.+++||+++... ++.+..
T Consensus 186 ~~i~~~~-----~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~~~~~~~ 236 (241)
T PRK13585 186 KELVDSV-----DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKFTLEEAI 236 (241)
T ss_pred HHHHHhC-----CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCcCHHHHH
Confidence 6665543 47899999999 8999999999999999999999764 444433
No 65
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.03 E-value=2.3e-08 Score=89.23 Aligned_cols=178 Identities=17% Similarity=0.206 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.+.+.|++++|+==.|+.+- ...-..++++.+++.++.|+.+.==+.+++ -++.+.++|||.+.+..+.
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~-g~~~~~~~i~~i~~~~~~pi~~ggGI~~~e-d~~~~~~~Ga~~vvlgs~~-- 104 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKE-GGPVNLPVIKKIVRETGVPVQVGGGIRSLE-DVEKLLDLGVDRVIIGTAA-- 104 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc-CCCCcHHHHHHHHHhcCCCEEEeCCcCCHH-HHHHHHHcCCCEEEEChHH--
Confidence 445556677889999999822223221 122245788998887777777655555544 4577888999999988774
Q ss_pred cccHHHHHHHHHHcCC-cEEEEEC---------------CCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHH
Q 023494 151 TIHLHRTLNQIKDLGA-KAGVVLN---------------PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~-k~Glai~---------------p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
..++..+.+.+++.|. ++.+++. +.++.+.++.+.+. +|.++++.+..-...+. ..++.+
T Consensus 105 l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g---~~~~~i 181 (230)
T TIGR00007 105 VENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSG---PNFELT 181 (230)
T ss_pred hhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCC---CCHHHH
Confidence 3556677777888873 4554433 22345556656554 89888887754211211 235556
Q ss_pred HHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+++++.. +.++.+-|||. .+.+..+.+.|||.+++||+++..
T Consensus 182 ~~i~~~~-----~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 182 KELVKAV-----NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHhC-----CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 6665542 47899999999 789999999999999999998754
No 66
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.01 E-value=2.3e-08 Score=91.82 Aligned_cols=189 Identities=17% Similarity=0.202 Sum_probs=125.9
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccc---------ccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---------~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|..+. ++-+.++++|+=. ||--.-+|. -.-+++.|++||+..++|+..-.+... ..-++.+.++|
T Consensus 14 ~v~~~-~qa~~ae~aga~~----v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~-~~Ea~~L~eaG 87 (283)
T cd04727 14 DVTNA-EQARIAEEAGAVA----VMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVRIGH-FVEAQILEALG 87 (283)
T ss_pred EeCCH-HHHHHHHHcCceE----EeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeeehhH-HHHHHHHHHcC
Confidence 55555 4567888888633 332111232 245899999999988899988555444 33466788999
Q ss_pred CCEEEEcccccccc-cHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCC-------------
Q 023494 139 ADIVSVHCEQSSTI-HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQ------------- 203 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~-~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ------------- 203 (281)
+|+| .++. .. ...++++.+|..- . .+.++.-..+++...-. ..+|+|-- +.+ |++|.
T Consensus 88 vDiI---DaT~-r~rP~~~~~~~iK~~~-~-~l~MAD~stleEal~a~~~Gad~I~T-Tl~-gyT~~~~~~~~~~~~i~~ 159 (283)
T cd04727 88 VDMI---DESE-VLTPADEEHHIDKHKF-K-VPFVCGARNLGEALRRISEGAAMIRT-KGE-AGTGNVVEAVRHMRAVNG 159 (283)
T ss_pred CCEE---eccC-CCCcHHHHHHHHHHHc-C-CcEEccCCCHHHHHHHHHCCCCEEEe-cCC-CCCCcHHHHHHHHHHHHH
Confidence 9999 3431 22 2467888887642 1 23444455665544444 45998842 223 44443
Q ss_pred ------ccchh-----------HHHHHHHHHHHhhhcCCCCeEE--EecCC-ChhcHHHHHHcCCcEEEEcccccCCCCH
Q 023494 204 ------SFIES-----------QVKKISDLRRMCLEKGVNPWIE--VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDY 263 (281)
Q Consensus 204 ------~f~~~-----------~l~kI~~lr~l~~~~~~~~~I~--VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp 263 (281)
.+.++ .++.|+++++.. ++++. ..||| +++++..+.++|||.+++||+||+++||
T Consensus 160 ~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-----~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP 234 (283)
T cd04727 160 EIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG-----RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENP 234 (283)
T ss_pred HHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc-----CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCH
Confidence 22222 345566665542 36775 89999 8999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 023494 264 AEAIKGIKTSKR 275 (281)
Q Consensus 264 ~~~~~~l~~~~~ 275 (281)
.+.+++|++.+.
T Consensus 235 ~~~tk~f~~ai~ 246 (283)
T cd04727 235 EKRARAIVEAVT 246 (283)
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 67
>PRK04302 triosephosphate isomerase; Provisional
Probab=99.00 E-value=2.6e-08 Score=88.95 Aligned_cols=164 Identities=18% Similarity=0.203 Sum_probs=106.8
Q ss_pred HHHHHHcCcCCCCCeeEEEEec-Chh-----hHHHHHHHcCCCEEEEcc-cc-cccccHHHHHHHHHHcCCcEEEEECCC
Q 023494 104 PLVVDALRPVTDLPLDVHLMIV-EPE-----QRVPDFIKAGADIVSVHC-EQ-SSTIHLHRTLNQIKDLGAKAGVVLNPA 175 (281)
Q Consensus 104 ~~~I~~ir~~t~~~idaHLmv~-dp~-----~~i~~~~~aGAd~Itvh~-Ea-~~~~~i~~~l~~ik~~G~k~Glai~p~ 175 (281)
...++.+++.+++++-+.=+-. +++ ..++++.++|+|++.+.. |- ....++.+.++.++++|+.+.+.+..
T Consensus 45 ~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~- 123 (223)
T PRK04302 45 ALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNN- 123 (223)
T ss_pred HHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCC-
Confidence 3445666555566665522211 112 247788999999888774 21 12346778899999999988864432
Q ss_pred CCHHHHHHhhc-cCCEEEEEeecC-CCC-C-CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcE
Q 023494 176 TSLSAIECVLD-VVDLVLIMSVNP-GFG-G-QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANA 250 (281)
Q Consensus 176 t~ie~~~~~l~-~vD~IlvmsV~p-G~~-G-Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~ 250 (281)
.++++.+.. ..|+|.++++.. |.+ + +.-.|+.+ .++.+.+++...+.+|.+.|||+ ++.+..+.+.|+|.
T Consensus 124 --~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i---~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadG 198 (223)
T PRK04302 124 --PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVV---EDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADG 198 (223)
T ss_pred --HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHH---HHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCE
Confidence 445555444 378888876532 332 1 11234443 33333333222247899999996 77888989999999
Q ss_pred EEEcccccCCCCHHHHHHHHHHh
Q 023494 251 LVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 251 ~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+++||++.+.+||.+.++++.+.
T Consensus 199 vlVGsa~l~~~~~~~~~~~~~~~ 221 (223)
T PRK04302 199 VLLASGVVKAKDPEAALRDLVSP 221 (223)
T ss_pred EEEehHHhCCcCHHHHHHHHHhh
Confidence 99999999999999998887653
No 68
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.94 E-value=9.3e-09 Score=94.64 Aligned_cols=193 Identities=16% Similarity=0.220 Sum_probs=121.8
Q ss_pred cCccCHHHHHHHHHHcCCCeEEE------E-eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHV------D-VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHi------D-ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
+|..+- ++.+..++.|.+.+-+ | +..|+ -...-+|+.|++||+..++|+-+-.++.. ..-.+.+.++|+
T Consensus 22 mdv~~~-~~a~iae~~g~~~v~~~~~~psd~~~~gg--~~Rm~~p~~I~aIk~~V~iPVigk~Righ-~~Ea~~L~~~Gv 97 (293)
T PRK04180 22 MDVVNA-EQAKIAEEAGAVAVMALERVPADIRAAGG--VARMADPKMIEEIMDAVSIPVMAKARIGH-FVEAQILEALGV 97 (293)
T ss_pred EEeCCH-HHHHHHHHhChHHHHHccCCCchHhhcCC--eeecCCHHHHHHHHHhCCCCeEEeehhhH-HHHHHHHHHcCC
Confidence 355554 4466777777654322 2 12231 12456899999999988899888555444 223556789999
Q ss_pred CEEEEccccccccc-HHHHHHHHHHcCCcEEEEECCCCCHHH-HHHhhccCCEEEEEeecCCCCCC--------------
Q 023494 140 DIVSVHCEQSSTIH-LHRTLNQIKDLGAKAGVVLNPATSLSA-IECVLDVVDLVLIMSVNPGFGGQ-------------- 203 (281)
Q Consensus 140 d~Itvh~Ea~~~~~-i~~~l~~ik~~G~k~Glai~p~t~ie~-~~~~l~~vD~IlvmsV~pG~~GQ-------------- 203 (281)
|+| .|+. ..+ ..+....+|.. .++ +.++.-..+++ +..+-..+|+|-- +-++|.+.-
T Consensus 98 DiI---D~Te-~lrpad~~~~~~K~~-f~~-~fmad~~~l~EAlrai~~GadmI~T-tge~gtg~v~~av~h~r~~~~~i 170 (293)
T PRK04180 98 DYI---DESE-VLTPADEEYHIDKWD-FTV-PFVCGARNLGEALRRIAEGAAMIRT-KGEAGTGNVVEAVRHMRQINGEI 170 (293)
T ss_pred CEE---eccC-CCCchHHHHHHHHHH-cCC-CEEccCCCHHHHHHHHHCCCCeeec-cCCCCCccHHHHHHHHHHHHHHH
Confidence 999 3432 222 44556666543 222 23344445544 4444556898742 224443320
Q ss_pred ----cc-----------chhHHHHHHHHHHHhhhcCCCCeEE--EecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHH
Q 023494 204 ----SF-----------IESQVKKISDLRRMCLEKGVNPWIE--VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAE 265 (281)
Q Consensus 204 ----~f-----------~~~~l~kI~~lr~l~~~~~~~~~I~--VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~ 265 (281)
.+ ....++.|+++++.. ++++. ..||| +++++..+.++|||.+++||+||+++||.+
T Consensus 171 ~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-----~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~ 245 (293)
T PRK04180 171 RRLTSMSEDELYTAAKELQAPYELVKEVAELG-----RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEK 245 (293)
T ss_pred HHHhCCCHHHHHhhccccCCCHHHHHHHHHhC-----CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHH
Confidence 01 112244455555432 36776 89999 899999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 023494 266 AIKGIKTSKR 275 (281)
Q Consensus 266 ~~~~l~~~~~ 275 (281)
.+++|.+.+.
T Consensus 246 ~akafv~ai~ 255 (293)
T PRK04180 246 RARAIVEATT 255 (293)
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 69
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.90 E-value=1.2e-07 Score=85.27 Aligned_cols=175 Identities=16% Similarity=0.109 Sum_probs=117.0
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccc
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 151 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~ 151 (281)
-.+..+.+.+.|+|++|+==.|+. ....-...++++|.+.+..|+.+.-=+.+.+ -++.++++||+.+.+..++.
T Consensus 37 p~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~~~~v~vgGGir~~e-dv~~~l~~Ga~~viigt~~~-- 111 (233)
T cd04723 37 PLDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAWPLGLWVDGGIRSLE-NAQEWLKRGASRVIVGTETL-- 111 (233)
T ss_pred HHHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhCCCCEEEecCcCCHH-HHHHHHHcCCCeEEEcceec--
Confidence 334556677789999998434442 1233456788888776666666655555533 56778899999999998863
Q ss_pred ccHHHHHHHHHHcCC-cEEEEECCC-----------CCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHH
Q 023494 152 IHLHRTLNQIKDLGA-KAGVVLNPA-----------TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 152 ~~i~~~l~~ik~~G~-k~Glai~p~-----------t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l 219 (281)
.+ .-.-+.++++|- ++.+++... ++.+.++.+...++.+++..+..-..++...-+. ++++.+.
T Consensus 112 ~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~---~~~i~~~ 187 (233)
T cd04723 112 PS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLEL---LERLAAR 187 (233)
T ss_pred cc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHH---HHHHHHh
Confidence 34 444555666776 666655431 2445556655557888888876432333333333 3444443
Q ss_pred hhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 220 CLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 220 ~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
. +.++.+.|||+ .+.+..+.++|++.+|+||+++..
T Consensus 188 ~-----~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 188 A-----DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred c-----CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 2 46899999999 799999999999999999999865
No 70
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.90 E-value=1.5e-07 Score=84.24 Aligned_cols=175 Identities=23% Similarity=0.284 Sum_probs=107.8
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC--CCCCeeEEEEe--------cChh---hHHHHHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMI--------VEPE---QRVPDFIK 136 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~--t~~~idaHLmv--------~dp~---~~i~~~~~ 136 (281)
.+.++.++.+.+.|++.+-+= +.+++..++. .+.++..++-. .++. ..++.+.+
T Consensus 21 ~d~~~~~~~~~~~g~~av~v~-------------~~~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~ 87 (235)
T cd00958 21 EDPEETVKLAAEGGADAVALT-------------KGIARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVR 87 (235)
T ss_pred cCHHHHHHHHHhcCCCEEEeC-------------hHHHHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHH
Confidence 477888889999888876541 2222222111 11122222211 1112 13778899
Q ss_pred cCCCEEEEccccccc------ccHHHHHHHHHHcCCcEEEEECCC-------CCHHHHHH----hhc-cCCEEEEEeecC
Q 023494 137 AGADIVSVHCEQSST------IHLHRTLNQIKDLGAKAGVVLNPA-------TSLSAIEC----VLD-VVDLVLIMSVNP 198 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~------~~i~~~l~~ik~~G~k~Glai~p~-------t~ie~~~~----~l~-~vD~IlvmsV~p 198 (281)
.||+.+.+..-.... +.+.++.+.++++|+++-+..... ...+.+.. ..+ .+|||-+- .+
T Consensus 88 ~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~--~~ 165 (235)
T cd00958 88 LGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTK--YT 165 (235)
T ss_pred CCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEec--CC
Confidence 999988665432111 146666777788999987755431 01122222 222 48999661 11
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh-------hcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-------KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~-------e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
+ .++.++++.+.. ..++.+.||++. ++++.+.++||+.+.+||+||+++||.+.+++++
T Consensus 166 ---~------~~~~~~~i~~~~-----~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~ 231 (235)
T cd00958 166 ---G------DAESFKEVVEGC-----PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAIS 231 (235)
T ss_pred ---C------CHHHHHHHHhcC-----CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHH
Confidence 1 244455555432 356778899865 6699999999999999999999999999999998
Q ss_pred Hh
Q 023494 272 TS 273 (281)
Q Consensus 272 ~~ 273 (281)
+.
T Consensus 232 ~~ 233 (235)
T cd00958 232 AV 233 (235)
T ss_pred HH
Confidence 74
No 71
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.87 E-value=7.4e-08 Score=87.96 Aligned_cols=194 Identities=25% Similarity=0.344 Sum_probs=131.2
Q ss_pred EeEEE--eccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 60 VSPSI--LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 60 i~pSi--la~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
-|||- ++-+ .+..+..+.+.++|++.|-| .-|..| |.=+.+.++.+|+.++.|+...=.+-||. -+.....+
T Consensus 57 aSPs~G~i~~~-~d~~~~a~~y~~~GA~aiSV-lTe~~~---F~Gs~~dL~~v~~~~~~PvL~KDFIid~~-QI~eA~~~ 130 (254)
T PF00218_consen 57 ASPSKGDIRED-FDPAEIAKAYEEAGAAAISV-LTEPKF---FGGSLEDLRAVRKAVDLPVLRKDFIIDPY-QIYEARAA 130 (254)
T ss_dssp EETTTEESBSS--SHHHHHHHHHHTT-SEEEE-E--SCC---CHHHHHHHHHHHHHSSS-EEEES---SHH-HHHHHHHT
T ss_pred CCCCCCccCcc-CCHHHHHHHHHhcCCCEEEE-ECCCCC---CCCCHHHHHHHHHHhCCCcccccCCCCHH-HHHHHHHc
Confidence 57763 3333 47888888999999998866 444322 33356678888887788888765666665 35567889
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
|||.|.+.....+.+.+.++++.+++.|+.+-+-++. .++++..+. .+++|.+=..+. +.|. -.+++-.++
T Consensus 131 GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~---~~El~~al~~~a~iiGINnRdL----~tf~-vd~~~~~~l 202 (254)
T PF00218_consen 131 GADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHN---EEELERALEAGADIIGINNRDL----KTFE-VDLNRTEEL 202 (254)
T ss_dssp T-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESS---HHHHHHHHHTT-SEEEEESBCT----TTCC-BHTHHHHHH
T ss_pred CCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECC---HHHHHHHHHcCCCEEEEeCccc----cCcc-cChHHHHHH
Confidence 9999999988765566789999999999999999973 333444333 477775533322 2232 124455566
Q ss_pred HHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
...+++ +..+..-+||+ ++++..+.++|+|.|.+|+++.+++||.+.+++|
T Consensus 203 ~~~ip~---~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~~~~~~~L 254 (254)
T PF00218_consen 203 APLIPK---DVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPDPGEALREL 254 (254)
T ss_dssp HCHSHT---TSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred HhhCcc---ceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHhcC
Confidence 676664 35666899999 8999999999999999999999999999998875
No 72
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.85 E-value=4.6e-07 Score=78.93 Aligned_cols=174 Identities=22% Similarity=0.269 Sum_probs=110.2
Q ss_pred HHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecCh---------hhHHHHHHHcCCCEEEEcc
Q 023494 76 VKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEP---------EQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 76 l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp---------~~~i~~~~~aGAd~Itvh~ 146 (281)
-+.+..+|+.-|-.. |++-|+++|+.+++|+.==.|-.-+ .+.++.+.++|||+|-+-+
T Consensus 5 A~Aa~~gGA~giR~~------------~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDa 72 (192)
T PF04131_consen 5 AKAAEEGGAVGIRAN------------GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDA 72 (192)
T ss_dssp HHHHHHCT-SEEEEE------------SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-
T ss_pred HHHHHHCCceEEEcC------------CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEec
Confidence 345667788766542 6788999999888887765554322 2457788999999999876
Q ss_pred cccc-cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc-chhHHHHHHHHHHHhhhc
Q 023494 147 EQSS-TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRMCLEK 223 (281)
Q Consensus 147 Ea~~-~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f-~~~~l~kI~~lr~l~~~~ 223 (281)
-.-. ..++.++++++|+.+..+.-.+. .+|+...-.+ .+|+|. +.--|+....- ..-.++-|+++++.
T Consensus 73 T~R~Rp~~l~~li~~i~~~~~l~MADis---t~ee~~~A~~~G~D~I~--TTLsGYT~~t~~~~pD~~lv~~l~~~---- 143 (192)
T PF04131_consen 73 TDRPRPETLEELIREIKEKYQLVMADIS---TLEEAINAAELGFDIIG--TTLSGYTPYTKGDGPDFELVRELVQA---- 143 (192)
T ss_dssp SSSS-SS-HHHHHHHHHHCTSEEEEE-S---SHHHHHHHHHTT-SEEE---TTTTSSTTSTTSSHHHHHHHHHHHT----
T ss_pred CCCCCCcCHHHHHHHHHHhCcEEeeecC---CHHHHHHHHHcCCCEEE--cccccCCCCCCCCCCCHHHHHHHHhC----
Confidence 4210 25689999999999933333453 5655555444 489884 45567754332 33346666666542
Q ss_pred CCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 224 GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 224 ~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+.++...|+|+ ++.+.++.++||+.+||||+|++ |....+++.+.++
T Consensus 144 --~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr---P~~It~~F~~ai~ 191 (192)
T PF04131_consen 144 --DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR---PQEITKRFVDAIK 191 (192)
T ss_dssp --TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH----HHHHHHHHHHHCH
T ss_pred --CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC---HHHHHHHHHHHHh
Confidence 46788999998 99999999999999999999996 6667777766553
No 73
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.82 E-value=5.4e-08 Score=88.44 Aligned_cols=196 Identities=23% Similarity=0.316 Sum_probs=143.3
Q ss_pred EeEEE--eccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 60 VSPSI--LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 60 i~pSi--la~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
-|||- +..|+ +..+..+..+++|+..|-| .-|.+| |.=.++.++.+|..+++|+.++=.+-||. .+..+...
T Consensus 55 aSPS~G~ir~d~-dp~~ia~~Ye~~GAa~iSV-LTd~~~---F~Gs~e~L~~v~~~v~~PvL~KDFiiD~y-QI~~Ar~~ 128 (254)
T COG0134 55 ASPSKGLIREDF-DPVEIAKAYEEGGAAAISV-LTDPKY---FQGSFEDLRAVRAAVDLPVLRKDFIIDPY-QIYEARAA 128 (254)
T ss_pred CCCCCCcccccC-CHHHHHHHHHHhCCeEEEE-ecCccc---cCCCHHHHHHHHHhcCCCeeeccCCCCHH-HHHHHHHc
Confidence 57887 56665 6667788899999998866 455433 33467889999888889999888888875 46677889
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|||.|-+.....+.+.+.++.+.+++.|+.+-+.++....+++... -.+++|.+= +-.... | .-.++.-.++.
T Consensus 129 GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~--~ga~iIGIN--nRdL~t--f-~vdl~~t~~la 201 (254)
T COG0134 129 GADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALK--LGAKIIGIN--NRDLTT--L-EVDLETTEKLA 201 (254)
T ss_pred CcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHh--CCCCEEEEe--CCCcch--h-eecHHHHHHHH
Confidence 9999999887654556899999999999999999975444433332 235555331 111111 2 11233445555
Q ss_pred HHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 218 RMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
.++++ +..+..-.||+ ++++..+.++|||.|-+|+++.+++|+.++++++.
T Consensus 202 ~~~p~---~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l~ 253 (254)
T COG0134 202 PLIPK---DVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALRELL 253 (254)
T ss_pred hhCCC---CcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHHhh
Confidence 55554 35566799999 99999999999999999999999999998888764
No 74
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.82 E-value=5e-07 Score=82.10 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=133.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.++++|+..|-|. -|++| +....+.++.+|+.++.|+...=.+-||.... ....+|||.|.++....+
T Consensus 62 d~~~~A~~y~~~GA~aISVl-Te~~~---F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~-ea~~~GADavLLI~~~L~ 136 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVL-TDQSY---FGGSLEDLKSVSSELKIPVLRKDFILDEIQIR-EARAFGASAILLIVRILT 136 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEE-cCCCc---CCCCHHHHHHHHHhcCCCEEeccccCCHHHHH-HHHHcCCCEEEeEHhhCC
Confidence 67777888999999988663 45533 56678889999988889998888888877544 455699999999988754
Q ss_pred cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
.+.+.++++.+++.|+.+-+-++....+ +..+. .++.|.+=..+. . .|. -.++.-.++..++++ +..+
T Consensus 137 ~~~l~~l~~~a~~lGle~LVEVh~~~El---~~a~~~ga~iiGINnRdL--~--t~~-vd~~~~~~L~~~ip~---~~~~ 205 (247)
T PRK13957 137 PSQIKSFLKHASSLGMDVLVEVHTEDEA---KLALDCGAEIIGINTRDL--D--TFQ-IHQNLVEEVAAFLPP---NIVK 205 (247)
T ss_pred HHHHHHHHHHHHHcCCceEEEECCHHHH---HHHHhCCCCEEEEeCCCC--c--cce-ECHHHHHHHHhhCCC---CcEE
Confidence 4579999999999999999999743333 33333 567664422211 1 121 123445566677653 2344
Q ss_pred EEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 230 EVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 230 ~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
..-+||+ ++++..+.++ +|.|.+|+++.+++||.+.+++|
T Consensus 206 IsESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~~~~~~~l 246 (247)
T PRK13957 206 VGESGIESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred EEcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCHHHHHHHh
Confidence 4579999 7899998887 99999999999999999888765
No 75
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.81 E-value=9.4e-07 Score=79.58 Aligned_cols=187 Identities=20% Similarity=0.150 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCc-ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGR-FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~-fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
+..+.++.+++.|++++|+==.|+. .. -....+.++++++..+.|+.+-==+.+++ .++.+.+.|++.+.+.-..
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~--~~~~~~~i~~i~~~~~~pv~~~GGI~s~~-d~~~~l~~G~~~v~ig~~~- 103 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEG--RETMLDVVERVAEEVFIPLTVGGGIRSLE-DARRLLRAGADKVSINSAA- 103 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccccc--CcccHHHHHHHHHhCCCCEEEeCCCCCHH-HHHHHHHcCCceEEECchh-
Confidence 5667778888899998876322211 11 12346788888887667776655556654 4456677899999888664
Q ss_pred ccccHHHHHHHHHHcCC-cEEEEEC--------------------CCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccch
Q 023494 150 STIHLHRTLNQIKDLGA-KAGVVLN--------------------PATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G~-k~Glai~--------------------p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
..++..+.+..++.+. ++.+.+. .....+..+.+.+ .+|.|.+.++...-..+.+.
T Consensus 104 -~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~- 181 (243)
T cd04731 104 -VENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYD- 181 (243)
T ss_pred -hhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCC-
Confidence 3445445555555553 3444432 1122333444433 48999998776532233332
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc-CCcEEEEcccccCCC-CHHHHHHHH
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA-GANALVAGSAVFGAK-DYAEAIKGI 270 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a-GAD~~VvGSaIf~a~-dp~~~~~~l 270 (281)
++-++++++.. +.++.+-|||+ ++.+..+.+. |+|.+++|++++... +..+..+.+
T Consensus 182 --~~~i~~i~~~~-----~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~~ 240 (243)
T cd04731 182 --LELIRAVSSAV-----NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKEYL 240 (243)
T ss_pred --HHHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHHH
Confidence 44445554432 47899999997 8999999987 999999999998654 444433333
No 76
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.79 E-value=3.9e-07 Score=81.25 Aligned_cols=178 Identities=19% Similarity=0.215 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.+++.|++++|+==.||.+-. -.-..+.++++++.++.|+.+.=-+.+.+ .++.+.++||+.|.+....
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g-~~~~~~~i~~i~~~~~~pv~~~GGI~~~e-d~~~~~~~Ga~~vilg~~~-- 106 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAG-KPVNLELIEAIVKAVDIPVQVGGGIRSLE-TVEALLDAGVSRVIIGTAA-- 106 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccC-CcccHHHHHHHHHHCCCCEEEcCCcCCHH-HHHHHHHcCCCEEEECchH--
Confidence 5566677888899999998544664321 12346788888777777776655555544 4567888999999888764
Q ss_pred cccHHHHHHHHHHcCCcEEEEECC---------------CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNP---------------ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p---------------~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
..++..+.+.++..+-++.+.+.. .++.+..+.+.+ .++.|+++.+...-..+.. .++.++
T Consensus 107 l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~---d~~~i~ 183 (233)
T PRK00748 107 VKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGP---NVEATR 183 (233)
T ss_pred HhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCC---CHHHHH
Confidence 233333344444443333333321 123455555544 3898988877653222222 345566
Q ss_pred HHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEcccccCC
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVFGA 260 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaIf~a 260 (281)
++++.. ++++.+-|||+ ++.+.++.+.| +|.+++|+++...
T Consensus 184 ~l~~~~-----~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 184 ELAAAV-----PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HHHHhC-----CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 666543 36888999999 78999999998 9999999998754
No 77
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.75 E-value=5.8e-07 Score=81.14 Aligned_cols=175 Identities=13% Similarity=0.106 Sum_probs=114.7
Q ss_pred HHHHHHHHH-cCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccc
Q 023494 73 GEQVKAVEL-AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 151 (281)
Q Consensus 73 ~~~l~~l~~-~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~ 151 (281)
.+..+.+.+ .|+|++|+==.|+.. ....-..++|++|.+.++.|+.+.==+.+.+ -++.++++||+.+.+..++ .
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a~-~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e-~v~~~l~~Ga~kvvigt~a--~ 109 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGAK-AQHAREFDYIKSLRRLTTKDIEVGGGIRTKS-QIMDYFAAGINYCIVGTKG--I 109 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECcccc-cCCcchHHHHHHHHhhcCCeEEEcCCcCCHH-HHHHHHHCCCCEEEECchH--h
Confidence 345566666 689999984334421 1223346788888776666655544444433 5677889999999999885 4
Q ss_pred ccHHHHHHHHHHcCCcEEEEECC--C----------C---CHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 152 IHLHRTLNQIKDLGAKAGVVLNP--A----------T---SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 152 ~~i~~~l~~ik~~G~k~Glai~p--~----------t---~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
.+++-+-+..+++|-++.+++.. + + +.+.++++.+. +..++++.+...-..+.+.-+.+ ++
T Consensus 110 ~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li---~~ 186 (234)
T PRK13587 110 QDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELT---GQ 186 (234)
T ss_pred cCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHH---HH
Confidence 55655556666777666555432 1 1 14445554443 67888888865333333444444 44
Q ss_pred HHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+++.. +.++.+-|||+ ++.+..+.+.|++.+|+|+++++
T Consensus 187 l~~~~-----~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 187 LVKAT-----TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHhC-----CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 44332 36899999999 78999999999999999999986
No 78
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.75 E-value=1.4e-06 Score=79.27 Aligned_cols=189 Identities=18% Similarity=0.154 Sum_probs=119.6
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
.+..+.++.+.+.|++++|+==.|+.. -.-....+.++++++.++.|+.+-==+.+++ .++.+.++||+.+.+.-+.
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~-~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~-d~~~~~~~Ga~~vivgt~~- 106 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASS-EGRTTMIDVVERTAETVFIPLTVGGGIKSIE-DVDKLLRAGADKVSINTAA- 106 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCccc-ccChhhHHHHHHHHHhcCCCEEEECCCCCHH-HHHHHHHcCCCEEEEChhH-
Confidence 366777888888999999983233210 0123345678888777667766654455544 4566777999999998774
Q ss_pred ccccHHHHHHHHHHcC-CcEEEEEC--CC---------------------CCHHHHHHhhc-cCCEEEEEeecCCCCCCc
Q 023494 150 STIHLHRTLNQIKDLG-AKAGVVLN--PA---------------------TSLSAIECVLD-VVDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G-~k~Glai~--p~---------------------t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~ 204 (281)
..++.-+-+..+.+| -++.+++. .. ..++..+.+.+ .+|.|++.+++..-..+.
T Consensus 107 -~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g 185 (254)
T TIGR00735 107 -VKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSG 185 (254)
T ss_pred -hhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCC
Confidence 345655555556666 34555443 11 12233344433 379999877655222233
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEcccccCC-CCHHHHHHHH
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVFGA-KDYAEAIKGI 270 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaIf~a-~dp~~~~~~l 270 (281)
+. ++-++++++.. +.++.+-|||+ ++.+.++.+.| +|.+++|++++.. -+..+..+.+
T Consensus 186 ~~---~~~~~~i~~~~-----~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~ 246 (254)
T TIGR00735 186 YD---LELTKAVSEAV-----KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYL 246 (254)
T ss_pred CC---HHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHH
Confidence 32 33445555442 46899999999 78999999988 9999999999854 3444433333
No 79
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.75 E-value=7.3e-07 Score=80.96 Aligned_cols=183 Identities=12% Similarity=0.088 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++...+.|.+++|++..|+.. .-.-..+++++|.+.+..|+.+.==+.+.+ -++.++++||+.|.+.-++
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e-~~~~~l~~Ga~~vvigT~a-- 106 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLLVVVEELSGGRRDDS-SLRAALTGGRARVNGGTAA-- 106 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHCCCCEEEcCCCCCHH-HHHHHHHcCCCEEEECchh--
Confidence 33456677788899999999999843 333456788888776555555443344433 5667889999999998775
Q ss_pred cccHHHHHHHHHHcCCcEEEE--EC-CC------------CC---HHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHH
Q 023494 151 TIHLHRTLNQIKDLGAKAGVV--LN-PA------------TS---LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVK 211 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Gla--i~-p~------------t~---ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~ 211 (281)
..++.-+-+.++++|-++.++ .. .+ +. .+.++++.+. +..|+++.++---..+-+.-+.
T Consensus 107 ~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l-- 184 (243)
T TIGR01919 107 LENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELL-- 184 (243)
T ss_pred hCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHH--
Confidence 345555555566666554443 32 11 22 2333333332 6788888886422223343333
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH---HcCCcEEEEcccccCC-CCHHHH
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI---EAGANALVAGSAVFGA-KDYAEA 266 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~---~aGAD~~VvGSaIf~a-~dp~~~ 266 (281)
++++++.. +.++.+.||++ .+.+..+. +.|++.+++|++++.. =+.+++
T Consensus 185 -~~~l~~~~-----~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~~~ 238 (243)
T TIGR01919 185 -LEVVAART-----DAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLEAA 238 (243)
T ss_pred -HHHHHhhC-----CCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHHHH
Confidence 44444442 36888999999 67888764 4599999999999864 355544
No 80
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.74 E-value=2.3e-06 Score=77.40 Aligned_cols=186 Identities=13% Similarity=0.152 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+-.+..+.+.+.|++++|+==.|+. ....-..+++++|.+.++.|+.+.==+.+.+ .++.++++||+.+.+..+.
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~~~pv~vgGGirs~e-dv~~~l~~Ga~kvviGs~~-- 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKLDVKVELSGGIRDDE-SLEAALATGCARVNIGTAA-- 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHcCCCEEEcCCCCCHH-HHHHHHHCCCCEEEECchH--
Confidence 4445566777899999998333442 1222335788888776666665544444543 6778889999999998875
Q ss_pred cccHHHHHHHHHHcCCcEEE--EECC------------CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 151 TIHLHRTLNQIKDLGAKAGV--VLNP------------ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Gl--ai~p------------~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
..+++-+.+.+++++-++.+ .+.. .++++.++.+.+ .++.++++.+..--..+.+ .++.+++
T Consensus 108 l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~---d~~~i~~ 184 (241)
T PRK14024 108 LENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP---NLELLRE 184 (241)
T ss_pred hCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCC---CHHHHHH
Confidence 35555555555666655544 3311 112344444433 3799999988652222222 3556666
Q ss_pred HHHHhhhcCCCCeEEEecCCC-hhcHHHHHH---cCCcEEEEcccccCC-CCHHHHHHH
Q 023494 216 LRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE---AGANALVAGSAVFGA-KDYAEAIKG 269 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~---aGAD~~VvGSaIf~a-~dp~~~~~~ 269 (281)
+++.. ++++.+-|||+ .+.+..+.+ .|+|.+++|++++.. -+++++.+.
T Consensus 185 i~~~~-----~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~~ 238 (241)
T PRK14024 185 VCART-----DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALAV 238 (241)
T ss_pred HHhhC-----CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHHH
Confidence 66543 47899999999 788888753 599999999998754 456555443
No 81
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.72 E-value=1.7e-06 Score=76.60 Aligned_cols=172 Identities=18% Similarity=0.157 Sum_probs=121.2
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-..|..+..+..+.+.++|++.+++.. +..-..+.++++++. ++..+-+-- |.+++ -.+.+.++
T Consensus 9 ~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~-------~t~~a~~~i~~l~~~~~~~~vGAGT-Vl~~~-~a~~a~~a 79 (204)
T TIGR01182 9 KIVPVIRIDDVDDALPLAKALIEGGLRVLEVTL-------RTPVALDAIRLLRKEVPDALIGAGT-VLNPE-QLRQAVDA 79 (204)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeC-------CCccHHHHHHHHHHHCCCCEEEEEe-CCCHH-HHHHHHHc
Confidence 466777777888888888999999999999953 223356778888764 433343322 24544 46788999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC--CCCccchhHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF--GGQSFIESQVKKISD 215 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~--~GQ~f~~~~l~kI~~ 215 (281)
||+++.-+.- -.++++.++++|+-.---. -||-|....+-..+|.|=+ .|.- +| .+-|+.
T Consensus 80 GA~FivsP~~------~~~v~~~~~~~~i~~iPG~--~TptEi~~A~~~Ga~~vKl---FPA~~~GG-------~~yika 141 (204)
T TIGR01182 80 GAQFIVSPGL------TPELAKHAQDHGIPIIPGV--ATPSEIMLALELGITALKL---FPAEVSGG-------VKMLKA 141 (204)
T ss_pred CCCEEECCCC------CHHHHHHHHHcCCcEECCC--CCHHHHHHHHHCCCCEEEE---CCchhcCC-------HHHHHH
Confidence 9999854433 2368888998887543322 3566666666666888754 5632 23 233556
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++.-++ +.++..-|||+++|+.+.+++|+..+.+||.||+.+
T Consensus 142 l~~plp----~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~L~~~~ 183 (204)
T TIGR01182 142 LAGPFP----QVRFCPTGGINLANVRDYLAAPNVACGGGSWLVPKD 183 (204)
T ss_pred HhccCC----CCcEEecCCCCHHHHHHHHhCCCEEEEEChhhcCch
Confidence 666554 478889999999999999999999999999999753
No 82
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.70 E-value=2.5e-06 Score=77.48 Aligned_cols=190 Identities=16% Similarity=0.110 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.+++.|++++|+==.|..- ..-....+.++++++.++.|+.+.==+.+++ .++.+.+.|++.+.+..+.
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~-~~~~~l~~Ga~~Viigt~~-- 106 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASS-EGRDTMLDVVERVAEQVFIPLTVGGGIRSVE-DARRLLRAGADKVSINSAA-- 106 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhCCCCEEeeCCCCCHH-HHHHHHHcCCCEEEEChhH--
Confidence 45566677778899999983233210 1123456788888776666655433334443 4556677999999998764
Q ss_pred cccHHHHHHHHHHcC---CcEEEEECC------------------C-CCHHHHHHhhc-cCCEEEEEeecCCCCCCccch
Q 023494 151 TIHLHRTLNQIKDLG---AKAGVVLNP------------------A-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G---~k~Glai~p------------------~-t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
..++..+-+..+.+| +.+.+.+.. + +..+.++.+.+ .++.+++.+++.....|.+.
T Consensus 107 l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d- 185 (253)
T PRK02083 107 VANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYD- 185 (253)
T ss_pred hhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC-
Confidence 344544444455555 233343321 1 22344444443 37889887766422334443
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc-CCcEEEEcccccC-CCCHHHHHHHHHH
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA-GANALVAGSAVFG-AKDYAEAIKGIKT 272 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a-GAD~~VvGSaIf~-a~dp~~~~~~l~~ 272 (281)
++.++++++.. ++++.+-|||+ .+.+.++.+. |+|.+++|+++.. .-++.+..+.+++
T Consensus 186 --~~~i~~~~~~~-----~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 186 --LELTRAVSDAV-----NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred --HHHHHHHHhhC-----CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHH
Confidence 45556655543 46899999999 7899888874 9999999999875 4566655555543
No 83
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.67 E-value=5.4e-06 Score=76.78 Aligned_cols=151 Identities=19% Similarity=0.282 Sum_probs=103.5
Q ss_pred HHHHHcCc---CCCCCeeEEEEecChhhHHH---HHHHcCCCEEEEccccc-----------ccccHHHHHHHHHHc-CC
Q 023494 105 LVVDALRP---VTDLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS-----------STIHLHRTLNQIKDL-GA 166 (281)
Q Consensus 105 ~~I~~ir~---~t~~~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~-----------~~~~i~~~l~~ik~~-G~ 166 (281)
..++.+++ ..+.|+.+-++-.+++.|.+ .+.++|+|+|-+|.-+. ..+.+.++++++|+. ++
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~ 155 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV 155 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC
Confidence 34445433 25689999999999987654 45678999999985431 112355788899987 77
Q ss_pred cEEEEECCCCC-HHHHHHhhc--cCCEEEEEee------c-----C-------CCCCCccchhHHHHHHHHHHHhhhcCC
Q 023494 167 KAGVVLNPATS-LSAIECVLD--VVDLVLIMSV------N-----P-------GFGGQSFIESQVKKISDLRRMCLEKGV 225 (281)
Q Consensus 167 k~Glai~p~t~-ie~~~~~l~--~vD~IlvmsV------~-----p-------G~~GQ~f~~~~l~kI~~lr~l~~~~~~ 225 (281)
.+.+=+.|+.+ ...+.+.+. .+|.|.+... + | |+.|....|..++.++++++..
T Consensus 156 Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~----- 230 (296)
T cd04740 156 PVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV----- 230 (296)
T ss_pred CEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-----
Confidence 88877777642 323233232 3787755311 1 1 2344444566677777777653
Q ss_pred CCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 226 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 226 ~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+++|...|||+ .+++.+++++|||.+-+||+++..
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~ 266 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVD 266 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcC
Confidence 47899999995 899999999999999999998863
No 84
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.64 E-value=1.2e-05 Score=73.55 Aligned_cols=177 Identities=16% Similarity=0.129 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++.+.+.|++++|+==.|+.. ..-.-..++++++.+.++.|+.+.==+.+++ -++.+.++|++.+.+..+.
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~-~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~-d~~~l~~~G~~~vvigs~~-- 106 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASK-RGSEPNYELIENLASECFMPLCYGGGIKTLE-QAKKIFSLGVEKVSINTAA-- 106 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCc-CCCcccHHHHHHHHHhCCCCEEECCCCCCHH-HHHHHHHCCCCEEEEChHH--
Confidence 66677888889999999984333321 1122346778888776666654433334433 3555678899999998764
Q ss_pred cccHHHHHHHHHHcCC-cEEEEEC--------------------CCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchh
Q 023494 151 TIHLHRTLNQIKDLGA-KAGVVLN--------------------PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~-k~Glai~--------------------p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
.+++..+.+.++++|. ++.+++. +..+.+.++.+.+. ++.++++.+...-..+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~--- 183 (258)
T PRK01033 107 LEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGY--- 183 (258)
T ss_pred hcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCC---
Confidence 3445444444555541 2333332 11233444444343 899999877542222223
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH-HcCCcEEEEcccccC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI-EAGANALVAGSAVFG 259 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~-~aGAD~~VvGSaIf~ 259 (281)
.++.++++++.. ++++.+-|||+ .+++.++. +.|+|.+++|+++.-
T Consensus 184 d~~~i~~~~~~~-----~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 184 DLELLKSFRNAL-----KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred CHHHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 355556655542 47899999999 78999988 799999999999743
No 85
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.63 E-value=1.1e-06 Score=77.31 Aligned_cols=173 Identities=20% Similarity=0.168 Sum_probs=117.1
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-.-|..+..+.++.|.++|++.+++= -+.....+.|+.+++. ++..+-+-- |.+++ -.+.+.++
T Consensus 9 ~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT-------~~t~~a~~~I~~l~~~~p~~~vGAGT-V~~~e-~a~~a~~a 79 (196)
T PF01081_consen 9 KIIAVIRGDDPEDAVPIAEALIEGGIRAIEIT-------LRTPNALEAIEALRKEFPDLLVGAGT-VLTAE-QAEAAIAA 79 (196)
T ss_dssp SEEEEETTSSGGGHHHHHHHHHHTT--EEEEE-------TTSTTHHHHHHHHHHHHTTSEEEEES---SHH-HHHHHHHH
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEe-------cCCccHHHHHHHHHHHCCCCeeEEEe-ccCHH-HHHHHHHc
Confidence 47788888888899999999999999999882 2233456788888764 655555532 34444 57788999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC-CCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF-GGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~l 216 (281)
||+++.-+.. -.++++.++++|+-..--.. ||-|....+--.+|+|=+ .|.- -| ..+-|+.+
T Consensus 80 GA~FivSP~~------~~~v~~~~~~~~i~~iPG~~--TptEi~~A~~~G~~~vK~---FPA~~~G------G~~~ik~l 142 (196)
T PF01081_consen 80 GAQFIVSPGF------DPEVIEYAREYGIPYIPGVM--TPTEIMQALEAGADIVKL---FPAGALG------GPSYIKAL 142 (196)
T ss_dssp T-SEEEESS--------HHHHHHHHHHTSEEEEEES--SHHHHHHHHHTT-SEEEE---TTTTTTT------HHHHHHHH
T ss_pred CCCEEECCCC------CHHHHHHHHHcCCcccCCcC--CHHHHHHHHHCCCCEEEE---ecchhcC------cHHHHHHH
Confidence 9999877654 24689999999987655442 455555555456777744 5642 12 13335555
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
+.-++ ++++...|||+++|+.+.+++|+..+++||.+|+.+
T Consensus 143 ~~p~p----~~~~~ptGGV~~~N~~~~l~ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 143 RGPFP----DLPFMPTGGVNPDNLAEYLKAGAVAVGGGSWLFPKD 183 (196)
T ss_dssp HTTTT----T-EEEEBSS--TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred hccCC----CCeEEEcCCCCHHHHHHHHhCCCEEEEECchhcCHH
Confidence 55544 478889999999999999999999999999999754
No 86
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.62 E-value=1e-06 Score=82.54 Aligned_cols=139 Identities=17% Similarity=0.256 Sum_probs=102.1
Q ss_pred HHHHHcCcCCCCCeeEEEEecChh--hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Q 023494 105 LVVDALRPVTDLPLDVHLMIVEPE--QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 182 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv~dp~--~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~ 182 (281)
+.|+++|+.++.||-+.+++..|. ..++.+.+.|++.|.++.-. +.+.++.+|+.|+++...+ +.++..+
T Consensus 52 ~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~-----p~~~i~~lk~~g~~v~~~v---~s~~~a~ 123 (307)
T TIGR03151 52 KEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGN-----PGKYIPRLKENGVKVIPVV---ASVALAK 123 (307)
T ss_pred HHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCC-----cHHHHHHHHHcCCEEEEEc---CCHHHHH
Confidence 346777777889999999886654 45677889999999997642 3468999999998876544 3565555
Q ss_pred Hhhc-cCCEEEEEeecCCC-CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 183 CVLD-VVDLVLIMSVNPGF-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 183 ~~l~-~vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
...+ .+|.|.+.+.+.|- .|+ ...+.-+.++++.. +++|.+.|||+ .+.+..+...|||.+.+||.+..
T Consensus 124 ~a~~~GaD~Ivv~g~eagGh~g~---~~~~~ll~~v~~~~-----~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 124 RMEKAGADAVIAEGMESGGHIGE---LTTMALVPQVVDAV-----SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred HHHHcCCCEEEEECcccCCCCCC---CcHHHHHHHHHHHh-----CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence 5544 49999887766542 232 22455666666543 47899999998 66799999999999999988654
No 87
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.62 E-value=2.4e-06 Score=79.25 Aligned_cols=194 Identities=17% Similarity=0.242 Sum_probs=128.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
|+..+.-.++.+++.+...| +.+-.++ |.+.--++. .++...+....|+-+||==..-...++.++++|++.|-+=
T Consensus 27 n~e~~~avi~aAe~~~~Pvi-i~~~~~~~~~~~~~~~~~-~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d 104 (281)
T PRK06806 27 NMEMVMGAIKAAEELNSPII-LQIAEVRLNHSPLHLIGP-LMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFD 104 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEE-EEcCcchhccCChHHHHH-HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEc
Confidence 44445566677788777765 5544442 222111222 2333333356899999855443457888999999888776
Q ss_pred cccccc----ccHHHHHHHHHHcCCcEEEE---EC-----------CCCCHHHHHHhh--ccCCEEEE--EeecCCCCCC
Q 023494 146 CEQSST----IHLHRTLNQIKDLGAKAGVV---LN-----------PATSLSAIECVL--DVVDLVLI--MSVNPGFGGQ 203 (281)
Q Consensus 146 ~Ea~~~----~~i~~~l~~ik~~G~k~Gla---i~-----------p~t~ie~~~~~l--~~vD~Ilv--msV~pG~~GQ 203 (281)
.-..+. ....++.+.++++|..+... +. ..|..+...++. ..+||+.+ .++++.+.+
T Consensus 105 ~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~- 183 (281)
T PRK06806 105 GSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNG- 183 (281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCC-
Confidence 432211 12446677788888766532 21 025666677765 36999998 888875532
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEEec--CCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDG--GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG--GI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
-.+-.+++|+++++.. ++++..-| ||+.+++++++++|++.+-++|+|+. ++.++++++.+
T Consensus 184 -~~~l~~~~L~~i~~~~-----~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~--a~~~a~~~~~~ 246 (281)
T PRK06806 184 -DPNLRFDRLQEINDVV-----HIPLVLHGGSGISPEDFKKCIQHGIRKINVATATFN--SVITAVNNLVL 246 (281)
T ss_pred -CCccCHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHH--HHHHHHHHHHH
Confidence 2234577788887764 47899999 99999999999999999999999997 57777777654
No 88
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.62 E-value=5e-06 Score=73.48 Aligned_cols=171 Identities=17% Similarity=0.139 Sum_probs=120.6
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-..|..+..+..+.+.++|++.++|= -+..-..+.|+.+++. ++..+-+.- |.|++ -.+.+.++
T Consensus 5 ~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit-------~~tp~a~~~I~~l~~~~~~~~vGAGT-Vl~~e-~a~~ai~a 75 (201)
T PRK06015 5 PVIPVLLIDDVEHAVPLARALAAGGLPAIEIT-------LRTPAALDAIRAVAAEVEEAIVGAGT-ILNAK-QFEDAAKA 75 (201)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEe-------CCCccHHHHHHHHHHHCCCCEEeeEe-CcCHH-HHHHHHHc
Confidence 46677777788888888899999999999882 2233456778887653 444444432 34554 56789999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC-C-CCCccchhHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG-F-GGQSFIESQVKKISD 215 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG-~-~GQ~f~~~~l~kI~~ 215 (281)
||+++.-+.- -.++++.++++|+-.---. -||-|....+-...|.|=+ .|+ . +|- +-|+.
T Consensus 76 GA~FivSP~~------~~~vi~~a~~~~i~~iPG~--~TptEi~~A~~~Ga~~vK~---FPa~~~GG~-------~yika 137 (201)
T PRK06015 76 GSRFIVSPGT------TQELLAAANDSDVPLLPGA--ATPSEVMALREEGYTVLKF---FPAEQAGGA-------AFLKA 137 (201)
T ss_pred CCCEEECCCC------CHHHHHHHHHcCCCEeCCC--CCHHHHHHHHHCCCCEEEE---CCchhhCCH-------HHHHH
Confidence 9998876654 2467888898886543322 2566666666556887754 564 2 232 33566
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.-++ +.++...|||+++|+.+++++|+...+.||.+++.
T Consensus 138 l~~plp----~~~l~ptGGV~~~n~~~~l~ag~~~~~ggs~l~~~ 178 (201)
T PRK06015 138 LSSPLA----GTFFCPTGGISLKNARDYLSLPNVVCVGGSWVAPK 178 (201)
T ss_pred HHhhCC----CCcEEecCCCCHHHHHHHHhCCCeEEEEchhhCCc
Confidence 666665 47888999999999999999999999999999964
No 89
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.61 E-value=3.4e-06 Score=75.45 Aligned_cols=175 Identities=17% Similarity=0.139 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++.+++.|++++|+==.|+... .-....+.++.+++.++.|+.+-=-+.+.+ .++.+.+.|++.+.+..+.
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~-~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~-d~~~~~~~G~~~vilg~~~-- 106 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKR-GREPLFELISNLAEECFMPLTVGGGIRSLE-DAKKLLSLGADKVSINTAA-- 106 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCccc-CCCCCHHHHHHHHHhCCCCEEEECCCCCHH-HHHHHHHcCCCEEEEChhH--
Confidence 566778888889999988732333211 123456778888877777766544444433 3445778899999988764
Q ss_pred cccHHHHHHHHHHcCCc-E--EEEECCC-------------------CCHHHHHHhhc-cCCEEEEEeecCCCCCCccch
Q 023494 151 TIHLHRTLNQIKDLGAK-A--GVVLNPA-------------------TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k-~--Glai~p~-------------------t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
..++..+.+..+++|.+ + .+.+... .+++..+.+.+ .+|.|.++++.+.-..+.+
T Consensus 107 l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~-- 184 (232)
T TIGR03572 107 LENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGY-- 184 (232)
T ss_pred hcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCC--
Confidence 34555455555555543 2 3333221 12344444433 3899999887653222222
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHH-HHHcCCcEEEEcccc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYK-VIEAGANALVAGSAV 257 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~-~~~aGAD~~VvGSaI 257 (281)
-++-++++++.. +.++.+-|||+ .+.+.. +.+.|||.+++|+++
T Consensus 185 -~~~~~~~i~~~~-----~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 185 -DLELIKTVSDAV-----SIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred -CHHHHHHHHhhC-----CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 244455555543 46899999999 788888 888999999999986
No 90
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=98.61 E-value=7.9e-07 Score=82.15 Aligned_cols=141 Identities=14% Similarity=0.194 Sum_probs=103.2
Q ss_pred CHHHHHHcCcC-CCCCeeEEEEecChhhHHHH-HHHcCCCEEEEcccccc-------------cccHHHHHHHHHHc--C
Q 023494 103 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPD-FIKAGADIVSVHCEQSS-------------TIHLHRTLNQIKDL--G 165 (281)
Q Consensus 103 G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~-~~~aGAd~Itvh~Ea~~-------------~~~i~~~l~~ik~~--G 165 (281)
--++++.+|+. ++..+.+.-|+....+++++ +..+|....|-..-+.. .+.+.+.++.+|+. +
T Consensus 109 T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~ 188 (277)
T TIGR01334 109 THKMVTLAKKISPMAVVACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPE 188 (277)
T ss_pred HHHHHHHHHhcCCCCEEEecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCC
Confidence 34567777764 77888888888888887664 57889888887754311 02588899999987 5
Q ss_pred CcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHH
Q 023494 166 AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI 244 (281)
Q Consensus 166 ~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~ 244 (281)
.++.+-+. ++++.+++++. +|.|++- .|.|+.+ +++.+++++.+.++.+++.||||++|+.++.
T Consensus 189 ~kIeVEv~---tleea~ea~~~GaDiI~lD---------n~~~e~l---~~~v~~l~~~~~~~~leasGGI~~~ni~~ya 253 (277)
T TIGR01334 189 RKITVEAD---TIEQALTVLQASPDILQLD---------KFTPQQL---HHLHERLKFFDHIPTLAAAGGINPENIADYI 253 (277)
T ss_pred CCEEEECC---CHHHHHHHHHcCcCEEEEC---------CCCHHHH---HHHHHHHhccCCCEEEEEECCCCHHHHHHHH
Confidence 67666664 77778887774 9999862 3555544 3344444334456889999999999999999
Q ss_pred HcCCcEEEEccccc
Q 023494 245 EAGANALVAGSAVF 258 (281)
Q Consensus 245 ~aGAD~~VvGSaIf 258 (281)
+.|+|++++|+--+
T Consensus 254 ~~GvD~is~gal~~ 267 (277)
T TIGR01334 254 EAGIDLFITSAPYY 267 (277)
T ss_pred hcCCCEEEeCccee
Confidence 99999999997533
No 91
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.60 E-value=1e-05 Score=73.03 Aligned_cols=186 Identities=18% Similarity=0.231 Sum_probs=128.2
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccc
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 151 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~ 151 (281)
-.+..+...+.|+.|+|+==.||-|.+ -.-..+.+++|.+.++.|+.+===+.+ .+.++.+.++|++.|++.--+ .
T Consensus 33 P~~~a~~~~~~Ga~~lHlVDLdgA~~g-~~~n~~~i~~i~~~~~~~vQvGGGIRs-~~~v~~ll~~G~~rViiGt~a--v 108 (241)
T COG0106 33 PLEVAKKWSDQGAEWLHLVDLDGAKAG-GPRNLEAIKEILEATDVPVQVGGGIRS-LEDVEALLDAGVARVIIGTAA--V 108 (241)
T ss_pred HHHHHHHHHHcCCcEEEEeeccccccC-CcccHHHHHHHHHhCCCCEEeeCCcCC-HHHHHHHHHCCCCEEEEecce--e
Confidence 345556777789999999777886643 334567788887766556554322333 457888999999999999875 5
Q ss_pred ccHHHHHHHHHHcCCcEEEEECCC---------------CCHHHHHHhhcc-CCEEEEEeecC-CC-CCCccchhHHHHH
Q 023494 152 IHLHRTLNQIKDLGAKAGVVLNPA---------------TSLSAIECVLDV-VDLVLIMSVNP-GF-GGQSFIESQVKKI 213 (281)
Q Consensus 152 ~~i~~~l~~ik~~G~k~Glai~p~---------------t~ie~~~~~l~~-vD~IlvmsV~p-G~-~GQ~f~~~~l~kI 213 (281)
.++..+.+.++++|-++.+++... ++.+..+.+.+. +..+++-.+.- |. .| .+.. -.
T Consensus 109 ~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G--~n~~---l~ 183 (241)
T COG0106 109 KNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSG--PNVD---LV 183 (241)
T ss_pred cCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccCC--CCHH---HH
Confidence 788899999999998877765422 233445555443 55666544432 22 23 2223 33
Q ss_pred HHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc-CCcEEEEcccccCC-CCHHHHHHHHH
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA-GANALVAGSAVFGA-KDYAEAIKGIK 271 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a-GAD~~VvGSaIf~a-~dp~~~~~~l~ 271 (281)
+++.+.. ++++...|||+ .+.++.+.+. |+..+|+|+|++.. =++.++.+-++
T Consensus 184 ~~l~~~~-----~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~~ 239 (241)
T COG0106 184 KELAEAV-----DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACVR 239 (241)
T ss_pred HHHHHHh-----CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHHh
Confidence 4444443 36888999999 8899999999 89999999999864 46777766554
No 92
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.57 E-value=2.4e-07 Score=85.26 Aligned_cols=94 Identities=13% Similarity=0.241 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCC-cEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 154 LHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 154 i~~~l~~ik~~G~-k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
+...++.+|+... ...+.+.++|..+..+.+...+|||++..+. |+ .++++.++++.. .+++|++.
T Consensus 167 ~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~---------~e---~l~~~v~~i~~~-~~i~i~as 233 (269)
T cd01568 167 ITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMS---------PE---ELKEAVKLLKGL-PRVLLEAS 233 (269)
T ss_pred HHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCC---------HH---HHHHHHHHhccC-CCeEEEEE
Confidence 5567888888643 3445555566666555555679999885433 33 344444444332 35789999
Q ss_pred cCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 233 GGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 233 GGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
||||++|+.++.++|||++++|+..+..
T Consensus 234 GGIt~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 234 GGITLENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred CCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 9999999999999999999997666654
No 93
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.55 E-value=9.5e-07 Score=79.82 Aligned_cols=189 Identities=19% Similarity=0.179 Sum_probs=120.9
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--------hHHHHHHHc-C
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--------QRVPDFIKA-G 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--------~~i~~~~~a-G 138 (281)
-+.+.+...+.+...|++.+-+=+-=-.... .-+..+++.|+. -.++++-+..+ +..++..++ |
T Consensus 18 ky~s~~~~~~ai~aSg~~ivTva~rR~~~~~--~~~~~~~~~i~~-----~~~~~lpNTaG~~ta~eAv~~a~lare~~~ 90 (248)
T cd04728 18 KYPSPAIMKEAIEASGAEIVTVALRRVNIGD--PGGESFLDLLDK-----SGYTLLPNTAGCRTAEEAVRTARLAREALG 90 (248)
T ss_pred CCCCHHHHHHHHHHhCCCEEEEEEEecccCC--CCcchHHhhccc-----cCCEECCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3446666667777888888766432211101 123344555542 13455655443 233444555 5
Q ss_pred CCEEEEccccc---ccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc-chhHH
Q 023494 139 ADIVSVHCEQS---STIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQV 210 (281)
Q Consensus 139 Ad~Itvh~Ea~---~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f-~~~~l 210 (281)
-|||-+-.... -.+++.++++++++. |..+--..++ +....+.+.+ .++.|.-+....| +|+.. .|+
T Consensus 91 ~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~d--d~~~ar~l~~~G~~~vmPlg~pIG-sg~Gi~~~~-- 165 (248)
T cd04728 91 TDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTD--DPVLAKRLEDAGCAAVMPLGSPIG-SGQGLLNPY-- 165 (248)
T ss_pred CCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHcCCCEeCCCCcCCC-CCCCCCCHH--
Confidence 68887654321 135788999999988 8887756654 3444555544 4788843334446 34443 344
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
.|+.+++. .++++.+||||+ ++.+.++.+.|||.+++||+|.+++||...++.|+..+
T Consensus 166 -~I~~I~e~-----~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av 224 (248)
T cd04728 166 -NLRIIIER-----ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAV 224 (248)
T ss_pred -HHHHHHHh-----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHH
Confidence 44444443 246899999999 99999999999999999999999999999999988754
No 94
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.55 E-value=3e-06 Score=78.07 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=100.5
Q ss_pred CCCCeeEEEEecChhhH---HHHHHHcCCCEEEEcccccc----------cccHHHHHHHHHHc-CCcEEEEECCCCCHH
Q 023494 114 TDLPLDVHLMIVEPEQR---VPDFIKAGADIVSVHCEQSS----------TIHLHRTLNQIKDL-GAKAGVVLNPATSLS 179 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~---i~~~~~aGAd~Itvh~Ea~~----------~~~i~~~l~~ik~~-G~k~Glai~p~t~ie 179 (281)
++.|+.+-++-.+++.| ++.+.++|+|.|-++.-+.. .+.+.++++++|+. ++-+.+=+.+..+.+
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~ 176 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLE 176 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHH
Confidence 57899999988888766 44567789999999865310 12356778888876 667777777776643
Q ss_pred HHHHhh----c-cCCEEEEEeecC------------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC
Q 023494 180 AIECVL----D-VVDLVLIMSVNP------------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236 (281)
Q Consensus 180 ~~~~~l----~-~vD~IlvmsV~p------------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~ 236 (281)
+..+++ + .+|+|.+..... |..|....+..++.++++++.++ .+++|...|||+
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~---~~ipiia~GGI~ 253 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ---LDIPIIGVGGID 253 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC---CCCCEEEECCCC
Confidence 333332 2 279987643211 11222233456777777777653 147899999998
Q ss_pred -hhcHHHHHHcCCcEEEEcccccCC
Q 023494 237 -PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 237 -~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+++.+++++|||.+-+||+++..
T Consensus 254 ~~~da~~~l~~GAd~V~vg~a~~~~ 278 (289)
T cd02810 254 SGEDVLEMLMAGASAVQVATALMWD 278 (289)
T ss_pred CHHHHHHHHHcCccHheEcHHHHhc
Confidence 899999999999999999999974
No 95
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.54 E-value=1.1e-06 Score=79.59 Aligned_cols=188 Identities=18% Similarity=0.187 Sum_probs=121.0
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--------hHHHHHHHc-C
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--------QRVPDFIKA-G 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--------~~i~~~~~a-G 138 (281)
-+.+.+...+.++..|++.+-+-+---.. -.-+..+.+.|+. ..+|++-+..+ +..++..++ |
T Consensus 19 ky~s~~~~~~ai~asg~~ivTvalrR~~~---~~~~~~~~~~i~~-----~~~~~lpNTaG~~ta~eAv~~a~lare~~~ 90 (250)
T PRK00208 19 KYPSPQVMQEAIEASGAEIVTVALRRVNL---GQGGDNLLDLLPP-----LGVTLLPNTAGCRTAEEAVRTARLAREALG 90 (250)
T ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEeecC---CCCcchHHhhccc-----cCCEECCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 34466666677778888887664422110 0113455555542 13455555443 233444554 5
Q ss_pred CCEEEEccccc---ccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc-chhHH
Q 023494 139 ADIVSVHCEQS---STIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQV 210 (281)
Q Consensus 139 Ad~Itvh~Ea~---~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f-~~~~l 210 (281)
-++|-+-.-.. ..+++.++++++++. |..+--..++ +....+.+.+ .+|+|.-+....| +|+.. .|+.
T Consensus 91 ~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~--d~~~ak~l~~~G~~~vmPlg~pIG-sg~gi~~~~~- 166 (250)
T PRK00208 91 TNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTD--DPVLAKRLEEAGCAAVMPLGAPIG-SGLGLLNPYN- 166 (250)
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHcCCCEeCCCCcCCC-CCCCCCCHHH-
Confidence 68887653321 245788999999988 8877755543 4444555544 4788833334446 34443 3444
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
|+.+++.. ++++.+||||+ ++.+.++.+.|+|.+++||+|++++||...+++|+..+
T Consensus 167 --i~~i~e~~-----~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av 224 (250)
T PRK00208 167 --LRIIIEQA-----DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAV 224 (250)
T ss_pred --HHHHHHhc-----CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHH
Confidence 45555432 46899999999 99999999999999999999999999999999988754
No 96
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=98.53 E-value=6.1e-06 Score=84.88 Aligned_cols=198 Identities=21% Similarity=0.212 Sum_probs=141.4
Q ss_pred EeEEEecc-CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 60 VSPSILSA-NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 60 i~pSila~-D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
-|||-=.. +..+..+..+..+++|++.|-| .-|..| |.=..+.++.+|+.+++|+...=.+-||.. +.....+|
T Consensus 59 aSPs~G~i~~~~d~~~~a~~y~~~GA~aiSV-lTe~~~---F~Gs~~~l~~vr~~v~~PvLrKDFIid~~Q-I~ea~~~G 133 (695)
T PRK13802 59 ASPSKGHLSDIPDPAALAREYEQGGASAISV-LTEGRR---FLGSLDDFDKVRAAVHIPVLRKDFIVTDYQ-IWEARAHG 133 (695)
T ss_pred CCCCCCcCCCCCCHHHHHHHHHHcCCcEEEE-ecCcCc---CCCCHHHHHHHHHhCCCCEEeccccCCHHH-HHHHHHcC
Confidence 36663222 2237777788899999998765 344422 334667788888888889887666777653 55678899
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
||.|.+.....+.+++.++++.+++.|+.+-+-++.. ++++..++ .+++|.+=..+. ..|. -.++.-.++.
T Consensus 134 ADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~---~el~~a~~~ga~iiGINnRdL----~tf~-vd~~~t~~L~ 205 (695)
T PRK13802 134 ADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTR---EEIERAIAAGAKVIGINARNL----KDLK-VDVNKYNELA 205 (695)
T ss_pred CCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCH---HHHHHHHhCCCCEEEEeCCCC----ccce-eCHHHHHHHH
Confidence 9999999886544579999999999999999999743 33333333 577775422221 1121 1244556666
Q ss_pred HHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 218 RMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
.++++ +..+..-+||+ ++++..+.++|+|.|.+|++|.+++||.+.+++|...
T Consensus 206 ~~ip~---~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~~ 259 (695)
T PRK13802 206 ADLPD---DVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVKA 259 (695)
T ss_pred hhCCC---CcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHhc
Confidence 77654 34445579999 8999999999999999999999999999999998753
No 97
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.52 E-value=7.7e-06 Score=74.62 Aligned_cols=179 Identities=22% Similarity=0.281 Sum_probs=111.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc--CCCCCeeEEE--Ee---cCh-----hhHHHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP--VTDLPLDVHL--MI---VEP-----EQRVPDFI 135 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~--~t~~~idaHL--mv---~dp-----~~~i~~~~ 135 (281)
...++++.++.+.+.|++.+-+. -. .++..++ .++.++.+++ -. .++ ...++.+.
T Consensus 34 ~~~~~~~~~~~a~~~~~~~v~~~---p~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al 100 (258)
T TIGR01949 34 GLVDIRKTVNEVAEGGADAVLLH---KG----------IVRRGHRGYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAI 100 (258)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeC---cc----------hhhhcccccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHH
Confidence 44577888888888888877552 22 2222111 1355565555 11 111 12377889
Q ss_pred HcCCCEEEEcccccc------cccHHHHHHHHHHcCCcEEEEEC------CCCCHHHHHHh----h-ccCCEEEEEeecC
Q 023494 136 KAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLN------PATSLSAIECV----L-DVVDLVLIMSVNP 198 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~------~~~i~~~l~~ik~~G~k~Glai~------p~t~ie~~~~~----l-~~vD~IlvmsV~p 198 (281)
+.||+.|-+..-..+ .+.+.++.+.++++|+.+-+.+. +..+.+.+... . ..+|||-+-
T Consensus 101 ~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~---- 176 (258)
T TIGR01949 101 RMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTP---- 176 (258)
T ss_pred HCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEecc----
Confidence 999998887643110 12344555556678877665332 12222333221 1 248999741
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-------hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-------PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-------~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
+.+ .++.++++.+.. .+++.+.|||+ .++++++.++||+.+.+||+||+++||.+++++|+
T Consensus 177 -~~~------~~~~l~~~~~~~-----~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~l~ 244 (258)
T TIGR01949 177 -YTG------DIDSFRDVVKGC-----PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKAVC 244 (258)
T ss_pred -CCC------CHHHHHHHHHhC-----CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHHHH
Confidence 221 244445444432 36788889999 77899999999999999999999999999999999
Q ss_pred HhcC
Q 023494 272 TSKR 275 (281)
Q Consensus 272 ~~~~ 275 (281)
+.+.
T Consensus 245 ~~i~ 248 (258)
T TIGR01949 245 KIVH 248 (258)
T ss_pred HHHh
Confidence 8764
No 98
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.50 E-value=1.3e-05 Score=72.67 Aligned_cols=186 Identities=13% Similarity=0.093 Sum_probs=113.9
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
..|+. +..+.+.+.|+|++|+==.|+.+ ....-..+++++|.+.+ .|+.+.==+.+. +-++.++++||+.|.+.
T Consensus 29 ~~dP~---~~A~~~~~~ga~~lhivDLd~a~-~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~-e~~~~~l~~Ga~rvvig 102 (241)
T PRK14114 29 EKDPA---ELVEKLIEEGFTLIHVVDLSKAI-ENSVENLPVLEKLSEFA-EHIQIGGGIRSL-DYAEKLRKLGYRRQIVS 102 (241)
T ss_pred CCCHH---HHHHHHHHCCCCEEEEEECCCcc-cCCcchHHHHHHHHhhc-CcEEEecCCCCH-HHHHHHHHCCCCEEEEC
Confidence 34554 44556667899999985445432 12233467788887654 344332222332 25677889999999999
Q ss_pred ccccccccHHHHHHHHHHcCCcEEEEECC------------CC---CHHHHHHhhcc-CCEEEEEeecCCCCCCccchhH
Q 023494 146 CEQSSTIHLHRTLNQIKDLGAKAGVVLNP------------AT---SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 146 ~Ea~~~~~i~~~l~~ik~~G~k~Glai~p------------~t---~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
-++. +++ ++++.+.++|-++.+++.- .+ +.+.++++.+. +..|++++++---..|-+.-+.
T Consensus 103 T~a~--~~p-~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el 179 (241)
T PRK14114 103 SKVL--EDP-SFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSL 179 (241)
T ss_pred chhh--CCH-HHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHH
Confidence 8753 444 3455555666565544321 12 23444444332 6788888886422223343333
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc-----C-CcEEEEcccccCC-CCHHHHHH
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA-----G-ANALVAGSAVFGA-KDYAEAIK 268 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a-----G-AD~~VvGSaIf~a-~dp~~~~~ 268 (281)
++++++.. +.++.+.||++ .+++..+.+. | ++.+++|++++.. =++++..+
T Consensus 180 ---~~~l~~~~-----~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~~~ 238 (241)
T PRK14114 180 ---TRKIAIEA-----EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVMKR 238 (241)
T ss_pred ---HHHHHHHC-----CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHHHH
Confidence 44444442 36888999999 7899998886 6 9999999999864 34554433
No 99
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.48 E-value=9.3e-06 Score=71.52 Aligned_cols=175 Identities=24% Similarity=0.269 Sum_probs=117.7
Q ss_pred HHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecCh---------hhHHHHHHHcCCCEEEEccc
Q 023494 77 KAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEP---------EQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 77 ~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp---------~~~i~~~~~aGAd~Itvh~E 147 (281)
..++++|+--|.+ .|.+-|+++|+..++|+.==++=.-| .+-++.++++|++.|.+-+-
T Consensus 40 ~Aa~~gGAvgiR~------------~gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT 107 (229)
T COG3010 40 LAAEQGGAVGIRI------------EGVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDAT 107 (229)
T ss_pred HHHHhCCcceEee------------cchhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecc
Confidence 4566778765543 26677888888888887654444322 23577899999999998764
Q ss_pred cc--ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhc
Q 023494 148 QS--STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEK 223 (281)
Q Consensus 148 a~--~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~ 223 (281)
.- +..++.++++.+|..|..+.-.++ |.-|-+...-..+|+|- |.--|+++.. -....++-++++.+
T Consensus 108 ~R~RP~~~~~~~i~~~k~~~~l~MAD~S--t~ee~l~a~~~G~D~IG--TTLsGYT~~~~~~~~pDf~lvk~l~~----- 178 (229)
T COG3010 108 DRPRPDGDLEELIARIKYPGQLAMADCS--TFEEGLNAHKLGFDIIG--TTLSGYTGYTEKPTEPDFQLVKQLSD----- 178 (229)
T ss_pred cCCCCcchHHHHHHHhhcCCcEEEeccC--CHHHHHHHHHcCCcEEe--cccccccCCCCCCCCCcHHHHHHHHh-----
Confidence 32 222688888888877766655553 33333333334589884 4444665522 22223555666554
Q ss_pred CCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 224 GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 224 ~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
.++.+-.-|.++ ++.++++++.||+.+||||||++ |++-.+++.+.+++
T Consensus 179 -~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR---p~~It~~F~~~ik~ 228 (229)
T COG3010 179 -AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR---PEEITQWFVDAIKS 228 (229)
T ss_pred -CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC---HHHHHHHHHHHHhc
Confidence 246788899999 99999999999999999999996 56777777776653
No 100
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=98.47 E-value=8.6e-06 Score=77.02 Aligned_cols=196 Identities=23% Similarity=0.268 Sum_probs=137.0
Q ss_pred EeEE--EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHH
Q 023494 60 VSPS--ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 60 i~pS--ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
-||| +++-|+ +..+..+..+++|+..|-| .-|..| |.=+++.++.+|+. ++.|+...=.+-||.. +..+..
T Consensus 128 ASPSkG~I~~~~-dp~~iA~~Ye~~GA~aISV-LTd~~~---F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQ-I~eAr~ 201 (338)
T PLN02460 128 ASPSRGVLRENF-DPVEIAQAYEKGGAACLSV-LTDEKY---FQGSFENLEAIRNAGVKCPLLCKEFIVDAWQ-IYYARS 201 (338)
T ss_pred CCCCCCccCCCC-CHHHHHHHHHhCCCcEEEE-ecCcCc---CCCCHHHHHHHHHcCCCCCEeeccccCCHHH-HHHHHH
Confidence 3666 344443 6777788899999998866 445432 34467788999986 8899988777888763 455778
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
+|||.|.+-....+..++.++++.+++.|+.+-+-++....+ +..+. .++.|.+=..+. ..-....++- .
T Consensus 202 ~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~El---erAl~~~ga~iIGINNRdL--~Tf~vDl~~t---~ 273 (338)
T PLN02460 202 KGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREM---DRVLGIEGVELIGINNRSL--ETFEVDISNT---K 273 (338)
T ss_pred cCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHH---HHHHhcCCCCEEEEeCCCC--CcceECHHHH---H
Confidence 899999988776545579999999999999999999744333 33333 466664422221 1111122333 3
Q ss_pred HHHH-----HhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 215 DLRR-----MCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 215 ~lr~-----l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
++.. +++.. +..+..-+||+ ++++..+.++|+|.|-+|.++.+++||.+.+++|.
T Consensus 274 ~L~~~~~~~~i~~~--~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~~l~~L~ 334 (338)
T PLN02460 274 KLLEGERGEQIREK--GIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGKGIAGLF 334 (338)
T ss_pred HHhhhccccccCCC--CeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHHHHh
Confidence 3333 23111 23444569998 89999999999999999999999999999988875
No 101
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.44 E-value=1.9e-05 Score=71.32 Aligned_cols=175 Identities=12% Similarity=0.107 Sum_probs=107.4
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
|+.. ..+.+.+.|++++|+==.|+.. ...-..++++++.+.+..|+.+.==+.+.+ -++.+++.||+.|.+..+
T Consensus 31 dP~~---~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e-~~~~~l~~Ga~kvvigt~ 104 (232)
T PRK13586 31 NPIE---IASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIGFDWIQVGGGIRDIE-KAKRLLSLDVNALVFSTI 104 (232)
T ss_pred CHHH---HHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhCCCCEEEeCCcCCHH-HHHHHHHCCCCEEEECch
Confidence 5544 4556667899999984345532 233345788888763223544433334433 567788999999999988
Q ss_pred ccccccHHHHHHHHHHcCC-cEEEEECC------------C---CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHH
Q 023494 148 QSSTIHLHRTLNQIKDLGA-KAGVVLNP------------A---TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQV 210 (281)
Q Consensus 148 a~~~~~i~~~l~~ik~~G~-k~Glai~p------------~---t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l 210 (281)
+ ..+++.+-+.++++|- ++.+++.. . ++.+.++.+.+. +.-++++.++---..+-+.-+.+
T Consensus 105 a--~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~ 182 (232)
T PRK13586 105 V--FTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVK 182 (232)
T ss_pred h--hCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHH
Confidence 5 4566655566677752 33333222 1 122333333332 56788888764222333444443
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+++++. . +. +.+.|||+ .+++..+.+.|+|.+++|+|++.
T Consensus 183 ---~~~~~~-~----~~-viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 183 ---DYARLI-R----GL-KEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred ---HHHHhC-C----CC-EEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 444332 1 23 55799999 68999999999999999999984
No 102
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.43 E-value=3.3e-05 Score=70.85 Aligned_cols=180 Identities=19% Similarity=0.149 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+-.+..+...+.|++|+|+==.||...- ..+++++|++ ++.++.+===+. . +.++.++++||+.|.+.--+.
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDLdgg~~~----n~~~i~~i~~-~~~~vqvGGGIR-~-e~i~~~l~~Ga~rViigT~Av- 115 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIMLGADDAS----LAAALEALRA-YPGGLQVGGGVN-S-ENAMSYLDAGASHVIVTSYVF- 115 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCcc----cHHHHHHHHh-CCCCEEEeCCcc-H-HHHHHHHHcCCCEEEEchHHH-
Confidence 3445566778889999998444773222 3678888887 555655533333 3 578889999999999986642
Q ss_pred ccc----HHHHHHHHHHcC---CcEEEEEC--CC------------CC---HHHHHHhhc-cCCEEEEEeecCCCCCCcc
Q 023494 151 TIH----LHRTLNQIKDLG---AKAGVVLN--PA------------TS---LSAIECVLD-VVDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 151 ~~~----i~~~l~~ik~~G---~k~Glai~--p~------------t~---ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f 205 (281)
.+ +.-+-+.++++| +-+++... .. |. .+.+..+.+ .+..+++-.+.---..+-+
T Consensus 116 -~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~ 194 (262)
T PLN02446 116 -RDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGI 194 (262)
T ss_pred -hCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCC
Confidence 33 655666667775 23333332 11 22 333344443 3788887666532111223
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc--CCcEEEEcccc--cCCC-CHHHHH
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA--GANALVAGSAV--FGAK-DYAEAI 267 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a--GAD~~VvGSaI--f~a~-dp~~~~ 267 (281)
. ++-++++++.. +++|.+.|||+ .+.+..+.+. |...+|+|+|| |... +.++++
T Consensus 195 d---~el~~~l~~~~-----~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~l~ea~ 254 (262)
T PLN02446 195 D---EELVALLGEHS-----PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLPYDDVV 254 (262)
T ss_pred C---HHHHHHHHhhC-----CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCccHHHHH
Confidence 3 33444444442 46899999999 8899999887 57889999999 7543 455444
No 103
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=98.42 E-value=2.2e-05 Score=71.81 Aligned_cols=171 Identities=23% Similarity=0.306 Sum_probs=113.9
Q ss_pred HHHHHHHHcCCCeEEEE-eeeCcccccccCCHHHHHH-------cCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 74 EQVKAVELAGCDWIHVD-VMDGRFVPNITIGPLVVDA-------LRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiD-ImDG~fvpn~~~G~~~I~~-------ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
++.+.+.++|+|.+-+- ..|..|... .+++++.. +|+..+.|+-+.++-+|+..=+..+...|||+|=+-
T Consensus 33 ~ea~~l~~~GvDgiiveN~~D~Py~~~--~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~ 110 (254)
T PF03437_consen 33 REAEALEEGGVDGIIVENMGDVPYPKR--VGPETVAAMARIAREVRREVSVPVGVNVLRNDPKAALAIAAATGADFIRVN 110 (254)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCccCC--CCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCCCEEEec
Confidence 45567889999997663 445656544 57777664 455567899999999999877778888999988743
Q ss_pred cccc--------ccccHHHHHHHHHHcCCcEEE--EECCC-------CCHHHHH-Hhhc--cCCEEEEEeecCCC-CCCc
Q 023494 146 CEQS--------STIHLHRTLNQIKDLGAKAGV--VLNPA-------TSLSAIE-CVLD--VVDLVLIMSVNPGF-GGQS 204 (281)
Q Consensus 146 ~Ea~--------~~~~i~~~l~~ik~~G~k~Gl--ai~p~-------t~ie~~~-~~l~--~vD~IlvmsV~pG~-~GQ~ 204 (281)
.... -.....++++.=|+.|.++-+ .+++. .+++... .... .+|.|.+- |. +|++
T Consensus 111 ~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVt----G~~TG~~ 186 (254)
T PF03437_consen 111 VFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVT----GKATGEP 186 (254)
T ss_pred CEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEEC----CcccCCC
Confidence 2111 012355677766666666433 33322 2343332 2212 38998873 33 3544
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
..+++|+++|+..+ +++-|.+|+|++|+.++.+. ||.+||||++=+
T Consensus 187 ---~~~~~l~~vr~~~~-----~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 187 ---PDPEKLKRVREAVP-----VPVLVGSGVTPENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred ---CCHHHHHHHHhcCC-----CCEEEecCCCHHHHHHHHHh-CCEEEEeeeeee
Confidence 34666777776643 68889999999999998876 999999999754
No 104
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.41 E-value=2e-05 Score=70.76 Aligned_cols=171 Identities=17% Similarity=0.106 Sum_probs=118.8
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-----CCCCCeeEEEEecChhhHHHH
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-----VTDLPLDVHLMIVEPEQRVPD 133 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-----~t~~~idaHLmv~dp~~~i~~ 133 (281)
.+.|-+-..|..+..+..+.+.++|++.++|= -+..-..+.++.|++ .++..+-+.- |.|++ -++.
T Consensus 16 ~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT-------~~tp~a~~~i~~l~~~~~~~~p~~~vGaGT-Vl~~e-~a~~ 86 (222)
T PRK07114 16 GMVPVFYHADVEVAKKVIKACYDGGARVFEFT-------NRGDFAHEVFAELVKYAAKELPGMILGVGS-IVDAA-TAAL 86 (222)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEe-------CCCCcHHHHHHHHHHHHHhhCCCeEEeeEe-CcCHH-HHHH
Confidence 47787887888888888899999999999882 223346677777752 2333344422 24544 5678
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC-CCCCccchhHHHH
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG-FGGQSFIESQVKK 212 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG-~~GQ~f~~~~l~k 212 (281)
+.++||+++.-+.- -.++++.++++|+-..--. -||-|....+-..+|.|=+ +|. ..| ..-
T Consensus 87 a~~aGA~FiVsP~~------~~~v~~~~~~~~i~~iPG~--~TpsEi~~A~~~Ga~~vKl---FPA~~~G-------~~~ 148 (222)
T PRK07114 87 YIQLGANFIVTPLF------NPDIAKVCNRRKVPYSPGC--GSLSEIGYAEELGCEIVKL---FPGSVYG-------PGF 148 (222)
T ss_pred HHHcCCCEEECCCC------CHHHHHHHHHcCCCEeCCC--CCHHHHHHHHHCCCCEEEE---CcccccC-------HHH
Confidence 89999998876554 2367888888886543322 2566666666556888754 553 233 233
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCCh--hcHHHHHHcCCcEEEEcccccCC
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVGP--KNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~--e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
|+.++.-++ +.++...|||++ +|+.+.+++|+..+.+||.||+.
T Consensus 149 ikal~~p~p----~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~ 194 (222)
T PRK07114 149 VKAIKGPMP----WTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPK 194 (222)
T ss_pred HHHHhccCC----CCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCc
Confidence 555555554 478999999998 89999999999999999999964
No 105
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=98.40 E-value=1.1e-05 Score=73.23 Aligned_cols=163 Identities=20% Similarity=0.249 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHcCCCeEEE--EeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEec-Ch-------h------hHHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHV--DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIV-EP-------E------QRVPDF 134 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHi--DImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~-dp-------~------~~i~~~ 134 (281)
++++ ...+.++|+|.|++ +...|+.+| +..+++.+++..++| +|.|+. ++ . +-++.+
T Consensus 10 s~~~-a~~A~~~GAdRiELc~~L~~GGlTP----S~g~i~~~~~~~~ip--v~vMIRPR~gdF~Ys~~E~~~M~~di~~~ 82 (248)
T PRK11572 10 SMEC-ALTAQQAGADRIELCAAPKEGGLTP----SLGVLKSVRERVTIP--VHPIIRPRGGDFCYSDGEFAAMLEDIATV 82 (248)
T ss_pred CHHH-HHHHHHcCCCEEEEccCcCCCCcCC----CHHHHHHHHHhcCCC--eEEEEecCCCCCCCCHHHHHHHHHHHHHH
Confidence 4444 44666789999998 566788888 455677777765666 445873 21 1 125567
Q ss_pred HHcCCCEEEEcccccc----cccHHHHHHHHHHcCCcEEE--EECC-CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccc
Q 023494 135 IKAGADIVSVHCEQSS----TIHLHRTLNQIKDLGAKAGV--VLNP-ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~----~~~i~~~l~~ik~~G~k~Gl--ai~p-~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~ 206 (281)
.++|+|++.|..-... .+..+++++.++ |+++-+ ++.. ..+.+.++.+++. +|.||- -+|++-.
T Consensus 83 ~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILT------SGg~~~a 154 (248)
T PRK11572 83 RELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG--PLAVTFHRAFDMCANPLNALKQLADLGVARILT------SGQQQDA 154 (248)
T ss_pred HHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc--CCceEEechhhccCCHHHHHHHHHHcCCCEEEC------CCCCCCH
Confidence 8899999999875421 112444454442 344432 3322 1344555555553 777762 1343334
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEE
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~V 252 (281)
.+.++.|+++.+... +..|.+.||||++|+.++.+.|+.-|=
T Consensus 155 ~~g~~~L~~lv~~a~----~~~Im~GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 155 EQGLSLIMELIAASD----GPIIMAGAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred HHHHHHHHHHHHhcC----CCEEEeCCCCCHHHHHHHHHcCCCEEe
Confidence 555666666655432 234899999999999999999998664
No 106
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.39 E-value=2.9e-05 Score=71.28 Aligned_cols=179 Identities=21% Similarity=0.266 Sum_probs=108.9
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-C-CCCCeeEEEEecC---hh-------hHHHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-V-TDLPLDVHLMIVE---PE-------QRVPDFI 135 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-~-t~~~idaHLmv~d---p~-------~~i~~~~ 135 (281)
...++++.++.+.+.|++.+-++ +..++..++ . .+.++.+++=..- |. ..++.+.
T Consensus 37 ~~~d~~~~~~~a~~~~~~av~v~-------------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~ 103 (267)
T PRK07226 37 GLVDIRDTVNKVAEGGADAVLMH-------------KGLARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAI 103 (267)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeC-------------HhHHhhhccccCCCCcEEEEEcCCCCCCCCCCcceeeecHHHHH
Confidence 44577778888888888877553 223333222 1 2344444433111 11 1377889
Q ss_pred HcCCCEEEEcccccc------cccHHHHHHHHHHcCCcEEEEE-------CCCCCHHHHHHhh-----ccCCEEEEEeec
Q 023494 136 KAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVL-------NPATSLSAIECVL-----DVVDLVLIMSVN 197 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~------~~~i~~~l~~ik~~G~k~Glai-------~p~t~ie~~~~~l-----~~vD~IlvmsV~ 197 (281)
+.|||.+-+..-..+ .+++.++.+.++++|+.+-+.. ......+.+.... ..+|||=.
T Consensus 104 ~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt---- 179 (267)
T PRK07226 104 KLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKT---- 179 (267)
T ss_pred HcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEee----
Confidence 999998777633111 1245566666777888766542 1111222222211 13798832
Q ss_pred CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhc-------HHHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 198 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-------AYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 198 pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~-------i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
++.| .++.++++.+. ..++|.+.|||+.+| +.+++++||+.+.+|++||+.+||++.+++|
T Consensus 180 -~~~~------~~~~l~~~~~~-----~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l 247 (267)
T PRK07226 180 -NYTG------DPESFREVVEG-----CPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAI 247 (267)
T ss_pred -CCCC------CHHHHHHHHHh-----CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHH
Confidence 2322 12333333332 136899999999876 7777899999999999999999999999999
Q ss_pred HHhcC
Q 023494 271 KTSKR 275 (281)
Q Consensus 271 ~~~~~ 275 (281)
+..+.
T Consensus 248 ~~~v~ 252 (267)
T PRK07226 248 SAVVH 252 (267)
T ss_pred HHHHh
Confidence 98654
No 107
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.38 E-value=2e-05 Score=73.28 Aligned_cols=142 Identities=18% Similarity=0.234 Sum_probs=97.6
Q ss_pred CCCCeeEEEEecChhhHHH---HHHHcC-CCEEEEcc-----cc----c--ccccHHHHHHHHHHc-CCcEEEEECCCC-
Q 023494 114 TDLPLDVHLMIVEPEQRVP---DFIKAG-ADIVSVHC-----EQ----S--STIHLHRTLNQIKDL-GAKAGVVLNPAT- 176 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~---~~~~aG-Ad~Itvh~-----Ea----~--~~~~i~~~l~~ik~~-G~k~Glai~p~t- 176 (281)
.+.|+.+.++-.+++.|.+ .+.++| +|+|-++. .. . ..+.+.++++++|+. .+.+.+=++|+.
T Consensus 90 ~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~ 169 (301)
T PRK07259 90 FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVT 169 (301)
T ss_pred cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCch
Confidence 3678999999999987754 456788 99998832 11 0 123467888888887 677777777653
Q ss_pred CHHHHHHhhc--cCCEEEEEeecCC------------------CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC
Q 023494 177 SLSAIECVLD--VVDLVLIMSVNPG------------------FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236 (281)
Q Consensus 177 ~ie~~~~~l~--~vD~IlvmsV~pG------------------~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~ 236 (281)
....+.+.+. .+|.|.+...-+| ..|....|..++.++++++.. +++|...|||+
T Consensus 170 ~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~-----~ipvi~~GGI~ 244 (301)
T PRK07259 170 DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV-----DIPIIGMGGIS 244 (301)
T ss_pred hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC-----CCCEEEECCCC
Confidence 2223333333 3788765332222 223333455677777777653 47899999995
Q ss_pred -hhcHHHHHHcCCcEEEEcccccCC
Q 023494 237 -PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 237 -~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+.+.+++.+|||.+-+||+++..
T Consensus 245 ~~~da~~~l~aGAd~V~igr~ll~~ 269 (301)
T PRK07259 245 SAEDAIEFIMAGASAVQVGTANFYD 269 (301)
T ss_pred CHHHHHHHHHcCCCceeEcHHHhcC
Confidence 999999999999999999998863
No 108
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=98.37 E-value=9e-06 Score=71.86 Aligned_cols=163 Identities=22% Similarity=0.312 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHcCCCeEEEE--eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecC-hh-------------hHHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVD--VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVE-PE-------------QRVPDF 134 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiD--ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~d-p~-------------~~i~~~ 134 (281)
++++ +..+.+.|+|.|++= ...|..+|. ..+++.+++..++| +|.|+.. .+ +-++.+
T Consensus 9 s~~~-a~~A~~~GAdRiELc~~l~~GGlTPS----~g~i~~~~~~~~ip--v~vMIRpr~gdF~Ys~~E~~~M~~dI~~~ 81 (201)
T PF03932_consen 9 SLED-ALAAEAGGADRIELCSNLEVGGLTPS----LGLIRQAREAVDIP--VHVMIRPRGGDFVYSDEEIEIMKEDIRML 81 (201)
T ss_dssp SHHH-HHHHHHTT-SEEEEEBTGGGT-B-------HHHHHHHHHHTTSE--EEEE--SSSS-S---HHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHcCCCEEEECCCccCCCcCcC----HHHHHHHHhhcCCc--eEEEECCCCCCccCCHHHHHHHHHHHHHH
Confidence 3444 455678899999983 566888884 56788887755555 5558852 21 135567
Q ss_pred HHcCCCEEEEcccccc-ccc---HHHHHHHHHHcCCcEEE--EECCC-CCHHHHHHhhc-cCCEEEEEeecCCCCCCccc
Q 023494 135 IKAGADIVSVHCEQSS-TIH---LHRTLNQIKDLGAKAGV--VLNPA-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~-~~~---i~~~l~~ik~~G~k~Gl--ai~p~-t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~ 206 (281)
.++|+|.+.|.+-... .-+ ..++++.++ |+.+-. ++..- .+.+.++.+++ .+|.||- . +|..-.
T Consensus 82 ~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLT--S----Gg~~~a 153 (201)
T PF03932_consen 82 RELGADGFVFGALTEDGEIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIELGFDRVLT--S----GGAPTA 153 (201)
T ss_dssp HHTT-SEEEE--BETTSSB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEE--S----TTSSST
T ss_pred HHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEEC--C----CCCCCH
Confidence 8999999999975321 112 334444432 444443 33222 23344555544 4787762 2 333333
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHH-cCCcEE
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANAL 251 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~ 251 (281)
.+.++.|+++.+... ..+.|.+.|||+++|++.+.+ .|+.-|
T Consensus 154 ~~g~~~L~~lv~~a~---~~i~Im~GgGv~~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 154 LEGIENLKELVEQAK---GRIEIMPGGGVRAENVPELVEETGVREI 196 (201)
T ss_dssp TTCHHHHHHHHHHHT---TSSEEEEESS--TTTHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHHcC---CCcEEEecCCCCHHHHHHHHHhhCCeEE
Confidence 455677776665533 358899999999999999988 888765
No 109
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.37 E-value=9.6e-05 Score=67.68 Aligned_cols=171 Identities=17% Similarity=0.260 Sum_probs=111.9
Q ss_pred HHHHHHHHcCCCeEEEE-eeeCcccccccCCHHHHHH-------cCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 74 EQVKAVELAGCDWIHVD-VMDGRFVPNITIGPLVVDA-------LRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiD-ImDG~fvpn~~~G~~~I~~-------ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
++.+.+.++|+|.+-+- ..|..|.+ ..+++++.. +|+....|+-+.++-+|+..=+..+..+|||+|=+-
T Consensus 32 ~ea~~l~~~GvD~viveN~~d~P~~~--~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FIRv~ 109 (257)
T TIGR00259 32 KDAMALEEGGVDAVMFENFFDAPFLK--EVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFIRVN 109 (257)
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCcC--CCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEEEEc
Confidence 45567789999987553 33455544 456666554 455556799999999999877888889999988772
Q ss_pred cccc---c-----cccHHHHHHHHHHcCCcEEE--EECC-------CCCHHH-HHHhhc--cCCEEEEEeecCCC-CCCc
Q 023494 146 CEQS---S-----TIHLHRTLNQIKDLGAKAGV--VLNP-------ATSLSA-IECVLD--VVDLVLIMSVNPGF-GGQS 204 (281)
Q Consensus 146 ~Ea~---~-----~~~i~~~l~~ik~~G~k~Gl--ai~p-------~t~ie~-~~~~l~--~vD~IlvmsV~pG~-~GQ~ 204 (281)
.... + .....++++.-++.|..+-+ .+++ ..++++ ++.... .+|-|.+- |. +|+.
T Consensus 110 ~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivt----G~~TG~~ 185 (257)
T TIGR00259 110 VLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILS----GKTTGTE 185 (257)
T ss_pred cEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEEC----cCCCCCC
Confidence 1110 0 12456777776665644443 2322 233433 332222 27988763 44 4777
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+..+.+++++ +.. .+.++-+.||+|++|+.++++. +|.+++||.+=
T Consensus 186 ~d~~~l~~vr---~~~----~~~PvllggGvt~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 186 VDLELLKLAK---ETV----KDTPVLAGSGVNLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred CCHHHHHHHH---hcc----CCCeEEEECCCCHHHHHHHHhh-CCEEEECCCcc
Confidence 7766655443 322 1358889999999999999997 99999999974
No 110
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=98.36 E-value=2.8e-05 Score=72.17 Aligned_cols=185 Identities=16% Similarity=0.194 Sum_probs=118.0
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCC-CCeeEEEEecChhhHHHHHHHcCCCEEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTD-LPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~-~~idaHLmv~dp~~~i~~~~~aGAd~It 143 (281)
.|+..+.-.++.+++.+...| +-+-.++ |.+.+..=...++.+.+..+ .|+-+||==....+.++.+.++|.+.|-
T Consensus 24 ~n~e~~~avi~aAe~~~~PvI-l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVm 102 (282)
T TIGR01859 24 NNLEWTQAILEAAEEENSPVI-IQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVM 102 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 344456667778888777765 3333332 11111111123444444456 8999998323345578889999998876
Q ss_pred Ecccccccc----cHHHHHHHHHHcCCcEEEEECC--------------CCCHHHHHHhhc--cCCEEE--EEeecCCCC
Q 023494 144 VHCEQSSTI----HLHRTLNQIKDLGAKAGVVLNP--------------ATSLSAIECVLD--VVDLVL--IMSVNPGFG 201 (281)
Q Consensus 144 vh~Ea~~~~----~i~~~l~~ik~~G~k~Glai~p--------------~t~ie~~~~~l~--~vD~Il--vmsV~pG~~ 201 (281)
+=.-..+.+ ...++.+.++++|+.+-..+.. -|..++..++.. .+|++. +.++|+-+.
T Consensus 103 id~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~ 182 (282)
T TIGR01859 103 IDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYK 182 (282)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccC
Confidence 654332211 2345566667788766533322 356777777765 599988 556665554
Q ss_pred CCccchhHHHHHHHHHHHhhhcCCCCeEEEec--CCChhcHHHHHHcCCcEEEEcccccC
Q 023494 202 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDG--GVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 202 GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG--GI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+. .+-.+++|+++++.. ++++..-| ||+.+++++++++|++.+-+++.+..
T Consensus 183 ~~--~~l~~e~L~~i~~~~-----~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~ 235 (282)
T TIGR01859 183 GE--PGLDFERLKEIKELT-----NIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRI 235 (282)
T ss_pred CC--CccCHHHHHHHHHHh-----CCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHH
Confidence 42 223377777777764 37899999 99999999999999999999999863
No 111
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.35 E-value=1.1e-05 Score=76.06 Aligned_cols=178 Identities=20% Similarity=0.244 Sum_probs=115.3
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCC-------HHHHHHcCcCCCCCeeEEEEec--Ch
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG-------PLVVDALRPVTDLPLDVHLMIV--EP 127 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G-------~~~I~~ir~~t~~~idaHLmv~--dp 127 (281)
...+..||...+...+.+..+.+++.|+|.|++-+-=-+-.|.. .| .+.++++|+.+++|+.+-|=.. +.
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~-~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~ 177 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDI-SGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSAL 177 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCc-ccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCH
Confidence 34577889877777778888888899999998865210001111 22 3668888887788988854322 33
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccch
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
....+.+.++|+|.|++|.-.. + ..+...+ .. .+ ...|++|....|
T Consensus 178 ~~~a~~l~~~Gadgi~~~nt~~---------------~----~~id~~~----~~-------~~----~~~glSG~~~~~ 223 (325)
T cd04739 178 AHMAKQLDAAGADGLVLFNRFY---------------Q----PDIDLET----LE-------VV----PNLLLSSPAEIR 223 (325)
T ss_pred HHHHHHHHHcCCCeEEEEcCcC---------------C----CCccccc----cc-------ee----cCCCcCCccchh
Confidence 3456677888999998875310 0 0010000 00 00 124567777778
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CC-HHHHHHHHHHhc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KD-YAEAIKGIKTSK 274 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~d-p~~~~~~l~~~~ 274 (281)
..++.++++++.. +++|...|||. .+.+.+++.+|||.+=+||+++.. .+ +.+..++|.+.+
T Consensus 224 ~al~~v~~v~~~~-----~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l 288 (325)
T cd04739 224 LPLRWIAILSGRV-----KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWM 288 (325)
T ss_pred HHHHHHHHHHccc-----CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHH
Confidence 8887777776543 47899999999 888999999999999999998863 22 233444444433
No 112
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.35 E-value=3.1e-05 Score=72.24 Aligned_cols=198 Identities=10% Similarity=0.158 Sum_probs=124.0
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCC--CCCeeEEEEecChhhHHHHHHHcCCCE
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVT--DLPLDVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t--~~~idaHLmv~dp~~~i~~~~~aGAd~ 141 (281)
+.|+..+.-.++.+++.+...| +.+-.++ |...+.+-..+++.+.+.. +.|+.+||==. ..+.+..+.++|.+.
T Consensus 25 ~~n~e~~~avi~aAe~~~sPvI-lq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftS 102 (293)
T PRK07315 25 TNNLEWTQAILRAAEAKKAPVL-IQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTS 102 (293)
T ss_pred ECCHHHHHHHHHHHHHHCCCEE-EEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCE
Confidence 3344455566778888877765 5554542 2111111123344443334 56999998555 234688899999988
Q ss_pred EEEcccccccc----cHHHHHHHHHHcCCcEEEE-----------E--CCCCCHHHHHHhhc-cCCEEEEE--eecCCCC
Q 023494 142 VSVHCEQSSTI----HLHRTLNQIKDLGAKAGVV-----------L--NPATSLSAIECVLD-VVDLVLIM--SVNPGFG 201 (281)
Q Consensus 142 Itvh~Ea~~~~----~i~~~l~~ik~~G~k~Gla-----------i--~p~t~ie~~~~~l~-~vD~Ilvm--sV~pG~~ 201 (281)
|-+=.-..+.+ ...++.+.++++|..+-.. + +.-|..+...++.. .+|++.+- ++|--+.
T Consensus 103 Vm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~ 182 (293)
T PRK07315 103 IMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYP 182 (293)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCC
Confidence 87764332222 2345555566666544211 1 11256666666654 48999876 6642222
Q ss_pred C-CccchhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 202 G-QSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 202 G-Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+ .+ +-.+++|+++++.+. ++|+..-|| |+.++++++++.|++.+-++|+|+. ++.++++++.+.
T Consensus 183 t~~k--~l~~e~L~~i~~~~~----~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i~~--~~~~~~~~~~~~ 249 (293)
T PRK07315 183 ENWE--GLDLDHLEKLTEAVP----GFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQI--AFANATRKFARD 249 (293)
T ss_pred CCCC--cCCHHHHHHHHHhcc----CCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHHHH--HHHHHHHHHHHh
Confidence 2 12 344777777777652 368999999 9999999999999999999999996 677777776543
No 113
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.34 E-value=3e-06 Score=76.14 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=110.2
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCE
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~ 141 (281)
+..+..|+..+ .+.+.+.|++++|+==.|+.. ....-..+.++.+.+.+..|+.+.==+.+.+ -++.+.++||+.
T Consensus 24 ~~~~~~dP~~~---a~~~~~~g~~~l~ivDLdaa~-~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~e-d~~~ll~~Ga~~ 98 (229)
T PF00977_consen 24 ETVYSGDPVEV---AKAFNEQGADELHIVDLDAAK-EGRGSNLELIKEIAKETGIPIQVGGGIRSIE-DAERLLDAGADR 98 (229)
T ss_dssp EECECCCHHHH---HHHHHHTT-SEEEEEEHHHHC-CTHHHHHHHHHHHHHHSSSEEEEESSE-SHH-HHHHHHHTT-SE
T ss_pred eeEECcCHHHH---HHHHHHcCCCEEEEEEccCcc-cCchhHHHHHHHHHhcCCccEEEeCccCcHH-HHHHHHHhCCCE
Confidence 33444565544 556677899999984334421 0111234577777776666666554555543 567788999999
Q ss_pred EEEcccccccccHHHHHHHHHHcCC-cEEEE--ECCC--------------CCHHHHHHhhcc-CCEEEEEeecCCCCCC
Q 023494 142 VSVHCEQSSTIHLHRTLNQIKDLGA-KAGVV--LNPA--------------TSLSAIECVLDV-VDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 142 Itvh~Ea~~~~~i~~~l~~ik~~G~-k~Gla--i~p~--------------t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ 203 (281)
|.+..++ ..+++-+-+.++++|. ++.++ ...+ ++.+.++++.+. +..|+++.++---.+|
T Consensus 99 Vvigt~~--~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~ 176 (229)
T PF00977_consen 99 VVIGTEA--LEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQ 176 (229)
T ss_dssp EEESHHH--HHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS
T ss_pred EEeChHH--hhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcC
Confidence 9999885 3444445555566665 44433 3322 122334443332 6788888886422333
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
-+.- +.++++++.. +.++.+.|||+ .+++..+.+.|++.+++|++++.
T Consensus 177 G~d~---~~~~~l~~~~-----~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 177 GPDL---ELLKQLAEAV-----NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp S--H---HHHHHHHHHH-----SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred CCCH---HHHHHHHHHc-----CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 3433 4455555554 36899999995 89999999999999999999975
No 114
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.33 E-value=5.8e-05 Score=67.91 Aligned_cols=172 Identities=20% Similarity=0.176 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++.+.+. ++++|+==.||.. ....-..+.++++.+.++.|+.+.==+.+.+ .++.+.++|++.+.+.-++
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~-~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~e-dv~~l~~~G~~~vivGtaa-- 105 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAF-EGKPKNLDVVKNIIRETGLKVQVGGGLRTYE-SIKDAYEIGVENVIIGTKA-- 105 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchh-cCCcchHHHHHHHHhhCCCCEEEcCCCCCHH-HHHHHHHCCCCEEEECchh--
Confidence 445556667666 8999982223421 1112346778888776667766644445543 5667788999999998775
Q ss_pred cccHHHHHHHHHHcCCcEEEEECC---------------CCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNP---------------ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p---------------~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
. ++.-+-+.++++|- +.+++.. -++.+.++.+.+.+..+++++++---..|-+. .+
T Consensus 106 ~-~~~~l~~~~~~~g~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d-----~l-- 176 (228)
T PRK04128 106 F-DLEFLEKVTSEFEG-ITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIE-----EI-- 176 (228)
T ss_pred c-CHHHHHHHHHHcCC-EEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHHhCEEEEEeccchhcccCHH-----HH--
Confidence 3 44433333445553 4443321 12234344443346788888886421222222 22
Q ss_pred HHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
.+.+. +.++.+.|||+ .+.+.++.+.|++.+++|++++...
T Consensus 177 -~~~~~----~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g~ 218 (228)
T PRK04128 177 -ERFWG----DEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEGR 218 (228)
T ss_pred -HHhcC----CCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcCC
Confidence 22221 46888999999 7999999999999999999998653
No 115
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.32 E-value=2.4e-05 Score=71.44 Aligned_cols=168 Identities=19% Similarity=0.070 Sum_probs=101.1
Q ss_pred HHHHHHHHcCCCeEEE-EeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccc-
Q 023494 74 EQVKAVELAGCDWIHV-DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST- 151 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHi-DImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~- 151 (281)
+..+...+.|++|+|+ |. |. + ..+.+++|.+.++.++.+===+ +. +-++.++++||+.|.+...+...
T Consensus 42 ~~A~~~~~~Ga~~lHvVDL--g~--~----n~~~i~~i~~~~~~~v~vGGGI-r~-e~v~~~l~aGa~rVvIGS~av~~~ 111 (253)
T TIGR02129 42 YYAKLYKDDGVKGCHVIML--GP--N----NDDAAKEALHAYPGGLQVGGGI-ND-TNAQEWLDEGASHVIVTSWLFTKG 111 (253)
T ss_pred HHHHHHHHcCCCEEEEEEC--CC--C----cHHHHHHHHHhCCCCEEEeCCc-CH-HHHHHHHHcCCCEEEECcHHHhCC
Confidence 4466777889999997 33 41 2 4578888877665554432222 34 57888999999999998754211
Q ss_pred -ccHHHHHHHHHHcC---CcEEEEEC------------CC------CCH-HHHHHhhccCCEEEEEeecCCCCCCccchh
Q 023494 152 -IHLHRTLNQIKDLG---AKAGVVLN------------PA------TSL-SAIECVLDVVDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 152 -~~i~~~l~~ik~~G---~k~Glai~------------p~------t~i-e~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
.++.-+-+..+++| +-+++... .- ++. +.++.+.+.+..|++=.++---..|-+.-+
T Consensus 112 ~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~dle 191 (253)
T TIGR02129 112 KFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEE 191 (253)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCCHH
Confidence 11444455556665 22333322 11 223 334444334667776555432122334333
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc--CCcEEEEcccccC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA--GANALVAGSAVFG 259 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a--GAD~~VvGSaIf~ 259 (281)
-++++++.. ++++.+.||++ .+++.++.+. |...+|+|++||.
T Consensus 192 ---l~~~l~~~~-----~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 192 ---LVSKLGEWS-----PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred ---HHHHHHhhC-----CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 344444432 47899999999 8899888554 5566999999985
No 116
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.31 E-value=1e-05 Score=71.82 Aligned_cols=142 Identities=14% Similarity=0.153 Sum_probs=92.2
Q ss_pred CCCCeeEEEEecChhhHHH---HHHHcCCCEEEEccccc---------------ccccHHHHHHHHHHc-CCcEEEEECC
Q 023494 114 TDLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNP 174 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~~-G~k~Glai~p 174 (281)
.+.|+.+.|...+|..|.+ .+.++|+|.|-+|.-+. ....+.+.++++++. +..+.+-++.
T Consensus 53 ~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~ 132 (231)
T cd02801 53 EERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL 132 (231)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 4589999999999987754 45678999999995431 122355778888764 4445554443
Q ss_pred CC--C--H-HHHHHhhc-cCCEEEEEeecCCCCCC-ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc
Q 023494 175 AT--S--L-SAIECVLD-VVDLVLIMSVNPGFGGQ-SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA 246 (281)
Q Consensus 175 ~t--~--i-e~~~~~l~-~vD~IlvmsV~pG~~GQ-~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a 246 (281)
.. . . +.++.+.+ .+|+|.+.. +...| ...+..++.++++++. .+++|.++|||+ ++.+.++++.
T Consensus 133 ~~~~~~~~~~~~~~l~~~Gvd~i~v~~---~~~~~~~~~~~~~~~~~~i~~~-----~~ipvi~~Ggi~~~~d~~~~l~~ 204 (231)
T cd02801 133 GWDDEEETLELAKALEDAGASALTVHG---RTREQRYSGPADWDYIAEIKEA-----VSIPVIANGDIFSLEDALRCLEQ 204 (231)
T ss_pred ccCCchHHHHHHHHHHHhCCCEEEECC---CCHHHcCCCCCCHHHHHHHHhC-----CCCeEEEeCCCCCHHHHHHHHHh
Confidence 32 1 2 22222222 378886643 22222 1123345556666553 357899999995 9999999998
Q ss_pred -CCcEEEEcccccCCCCH
Q 023494 247 -GANALVAGSAVFGAKDY 263 (281)
Q Consensus 247 -GAD~~VvGSaIf~a~dp 263 (281)
|+|.+.+|++++..++.
T Consensus 205 ~gad~V~igr~~l~~P~~ 222 (231)
T cd02801 205 TGVDGVMIGRGALGNPWL 222 (231)
T ss_pred cCCCEEEEcHHhHhCCHH
Confidence 89999999999975543
No 117
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=98.31 E-value=1e-05 Score=75.01 Aligned_cols=141 Identities=12% Similarity=0.167 Sum_probs=95.3
Q ss_pred HHHHHHcCc-CCCCCeeEEEEecChhhHHH-HHHHcCCCEEEEcccccc-------------cccHHHHHHHHHHc--CC
Q 023494 104 PLVVDALRP-VTDLPLDVHLMIVEPEQRVP-DFIKAGADIVSVHCEQSS-------------TIHLHRTLNQIKDL--GA 166 (281)
Q Consensus 104 ~~~I~~ir~-~t~~~idaHLmv~dp~~~i~-~~~~aGAd~Itvh~Ea~~-------------~~~i~~~l~~ik~~--G~ 166 (281)
-++++.+|+ .++..+...=|+....+.++ .+..+|....|-..-... .+.+.+.++.+|+. ..
T Consensus 111 ~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~ 190 (284)
T PRK06096 111 AQMLALLRERYPDGNIACTRKAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAPEK 190 (284)
T ss_pred HHHHHHHHhhCCCcEEEecCcCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCCCC
Confidence 455666665 36667777777777667665 457888766664332210 11466788888876 45
Q ss_pred cEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHH
Q 023494 167 KAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE 245 (281)
Q Consensus 167 k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~ 245 (281)
++-+-+. .++++++.++. +|.|++ ..|.|+.+.+. .+++++.+.++.+++.||||++|++++.+
T Consensus 191 kIeVEv~---tleqa~ea~~agaDiI~L---------Dn~~~e~l~~a---v~~~~~~~~~~~leaSGGI~~~ni~~yA~ 255 (284)
T PRK06096 191 KIVVEAD---TPKEAIAALRAQPDVLQL---------DKFSPQQATEI---AQIAPSLAPHCTLSLAGGINLNTLKNYAD 255 (284)
T ss_pred CEEEECC---CHHHHHHHHHcCCCEEEE---------CCCCHHHHHHH---HHHhhccCCCeEEEEECCCCHHHHHHHHh
Confidence 5555443 67777777764 999987 34666665544 44444334467899999999999999999
Q ss_pred cCCcEEEEcccccCC
Q 023494 246 AGANALVAGSAVFGA 260 (281)
Q Consensus 246 aGAD~~VvGSaIf~a 260 (281)
.|+|++++|+- +.+
T Consensus 256 tGvD~Is~gal-~~a 269 (284)
T PRK06096 256 CGIRLFITSAP-YYA 269 (284)
T ss_pred cCCCEEEECcc-ccC
Confidence 99999988764 543
No 118
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=98.29 E-value=0.0001 Score=65.51 Aligned_cols=172 Identities=19% Similarity=0.183 Sum_probs=107.5
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcC-CC-CCeeEEEEe-cChhhHHHHHHHcCCCEEEE
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPV-TD-LPLDVHLMI-VEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~-t~-~~idaHLmv-~dp~~~i~~~~~aGAd~Itv 144 (281)
.+++ .++.+.+.|+|++=+ .|.|.- ...++..+.|.+. .+ ...+. ..+ .+|....+.+.+.+.|+|-+
T Consensus 11 ~~~e-da~~~~~~Gad~iGf-----I~~~~S~R~V~~~~a~~i~~~~~~~i~~Vg-Vf~~~~~~~i~~~~~~~~~d~vQL 83 (210)
T PRK01222 11 TTPE-DAEAAAELGADAIGF-----VFYPKSPRYVSPEQAAELAAALPPFVKVVG-VFVNASDEEIDEIVETVPLDLLQL 83 (210)
T ss_pred CcHH-HHHHHHHcCCCEEEE-----ccCCCCCCcCCHHHHHHHHHhCCCCCCEEE-EEeCCCHHHHHHHHHhcCCCEEEE
Confidence 3444 577788899998744 233432 3466777777664 22 33333 344 45566667778899999999
Q ss_pred cccccccccHHHHHHHHHH-cCCcEEEEECCCC--CHHHHHHhhccCCEEEEEeecC--CCCCCccchhHHHHHHHHHHH
Q 023494 145 HCEQSSTIHLHRTLNQIKD-LGAKAGVVLNPAT--SLSAIECVLDVVDLVLIMSVNP--GFGGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 145 h~Ea~~~~~i~~~l~~ik~-~G~k~Glai~p~t--~ie~~~~~l~~vD~IlvmsV~p--G~~GQ~f~~~~l~kI~~lr~l 219 (281)
|... + .+.++.+|+ .++++.-++.... .+....++.+.+|++++=+..| |-.|..|.-..+. +++
T Consensus 84 Hg~e----~-~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~-----~~~ 153 (210)
T PRK01222 84 HGDE----T-PEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLP-----AGL 153 (210)
T ss_pred CCCC----C-HHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhh-----hcc
Confidence 9763 1 234556665 4677766665543 3444455556689998855444 4456666543331 111
Q ss_pred hhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEEcccccCC---CCHH
Q 023494 220 CLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVFGA---KDYA 264 (281)
Q Consensus 220 ~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~VvGSaIf~a---~dp~ 264 (281)
..++.+.|||+++|+.++++. +..++=+-|.+=.+ .|+.
T Consensus 154 ------~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgvE~~~G~KD~~ 196 (210)
T PRK01222 154 ------AKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGVESAPGIKDPE 196 (210)
T ss_pred ------CCCEEEECCCCHHHHHHHHHhcCCCEEEecCceECCCCCcCHH
Confidence 236779999999999998875 77777777776532 4554
No 119
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.29 E-value=4.9e-05 Score=70.58 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=99.0
Q ss_pred CCCeeEEEEecChhhHHH---HHHHc--CCCEEEEccccc-----------ccccHHHHHHHHHHc-CCcEEEEECCCC-
Q 023494 115 DLPLDVHLMIVEPEQRVP---DFIKA--GADIVSVHCEQS-----------STIHLHRTLNQIKDL-GAKAGVVLNPAT- 176 (281)
Q Consensus 115 ~~~idaHLmv~dp~~~i~---~~~~a--GAd~Itvh~Ea~-----------~~~~i~~~l~~ik~~-G~k~Glai~p~t- 176 (281)
+.|+.+.++-.+|+.|.+ .+.++ ++|.+-+-.-+. ..+.+.++++++|+. ++.+.+=+.|+.
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~ 169 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNVT 169 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCChh
Confidence 468999999999987754 34444 389998854321 113467788888875 777777777653
Q ss_pred CHHHHHHhhc--cCCEEEEEeecCC------------------CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC
Q 023494 177 SLSAIECVLD--VVDLVLIMSVNPG------------------FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236 (281)
Q Consensus 177 ~ie~~~~~l~--~vD~IlvmsV~pG------------------~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~ 236 (281)
....+.+.+. .+|.|.+.....| +.|....|..++.+.++++.. +++|..-|||.
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-----~ipvi~~GGI~ 244 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV-----DIPIIGVGGIT 244 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC-----CCCEEEECCCC
Confidence 2233333333 3899876422112 122222333455666665532 47888999995
Q ss_pred -hhcHHHHHHcCCcEEEEcccccCCCCH-HHHHHHHHHhc
Q 023494 237 -PKNAYKVIEAGANALVAGSAVFGAKDY-AEAIKGIKTSK 274 (281)
Q Consensus 237 -~e~i~~~~~aGAD~~VvGSaIf~a~dp-~~~~~~l~~~~ 274 (281)
++++.+++++|||.+-+||+++..++. .+..+.+.+.+
T Consensus 245 s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~ 284 (300)
T TIGR01037 245 SFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFL 284 (300)
T ss_pred CHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHH
Confidence 999999999999999999998865543 23334444433
No 120
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.29 E-value=1.6e-05 Score=71.73 Aligned_cols=57 Identities=23% Similarity=0.434 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhcCCCC-eEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 211 KKISDLRRMCLEKGVNP-WIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~-~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
+-++++++.. +. ++.+.|||+ +++++++.++|||.+|+||++.+ ||.+.++++++.+
T Consensus 173 e~I~~v~~~~-----~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~~ 231 (232)
T PRK04169 173 EMVKAVKKAL-----DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKAI 231 (232)
T ss_pred HHHHHHHHhc-----CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhhc
Confidence 3445555543 34 789999999 77999999999999999999994 6667777777654
No 121
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.25 E-value=7.8e-06 Score=76.01 Aligned_cols=93 Identities=12% Similarity=0.234 Sum_probs=67.3
Q ss_pred HHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+.+.++.+|+. +.++++... .++++.+.+. .+|+|++ + +|.++.+++ +.+++++.+.++++
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~---tleea~eA~~~GaD~I~L-------D--n~~~e~l~~---av~~~~~~~~~i~l 246 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETE---TLEQVQEALEYGADIIML-------D--NMPVDLMQQ---AVQLIRQQNPRVKI 246 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECC---CHHHHHHHHHcCCCEEEE-------C--CCCHHHHHH---HHHHHHhcCCCeEE
Confidence 67788888875 466777664 4555555554 5999986 1 355555544 34444333446899
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++.||||++|++++.+.|+|++++|+.+++++
T Consensus 247 eAsGGIt~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 247 EASGNITLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 99999999999999999999999999988654
No 122
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.21 E-value=8e-05 Score=70.35 Aligned_cols=195 Identities=24% Similarity=0.297 Sum_probs=124.6
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEe-----eeCc-------------ccccccC---CH-HHHHHcCcC--CCCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDV-----MDGR-------------FVPNITI---GP-LVVDALRPV--TDLP 117 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDI-----mDG~-------------fvpn~~~---G~-~~I~~ir~~--t~~~ 117 (281)
|-++++=+....+.++.+.+.|+..+.+-= -.|+ +.+.+.+ |. .+++.+++. .+.|
T Consensus 51 Pi~~AsG~~~~~~~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~p 130 (327)
T cd04738 51 PVGLAAGFDKNAEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGP 130 (327)
T ss_pred CCEeCcCCCCCHHHHHHHHHCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCe
Confidence 445555555556778888888887765530 0111 1111112 22 245666543 3678
Q ss_pred eeEEEEecC-------hhhHHHHHHHcC--CCEEEEcccccc---------cccHHHHHHHHHHc-C-----CcEEEEEC
Q 023494 118 LDVHLMIVE-------PEQRVPDFIKAG--ADIVSVHCEQSS---------TIHLHRTLNQIKDL-G-----AKAGVVLN 173 (281)
Q Consensus 118 idaHLmv~d-------p~~~i~~~~~aG--Ad~Itvh~Ea~~---------~~~i~~~l~~ik~~-G-----~k~Glai~ 173 (281)
+.+-+.-++ +.+|.+.+.+++ ||++-+-.-+.. .+.+.++++++|+. + +.+.+=+.
T Consensus 131 livsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~ 210 (327)
T cd04738 131 LGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIA 210 (327)
T ss_pred EEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeC
Confidence 888887665 456766655544 899888543210 12466777777764 2 66777788
Q ss_pred CCCCHHHHHHhhc-----cCCEEEEEeecC---------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 174 PATSLSAIECVLD-----VVDLVLIMSVNP---------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 174 p~t~ie~~~~~l~-----~vD~IlvmsV~p---------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
|....+.+.++.+ .+|.|.+....+ |++|....+..++.++++++.+. .+++|..-|
T Consensus 211 ~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~---~~ipIi~~G 287 (327)
T cd04738 211 PDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTG---GKIPIIGVG 287 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhC---CCCcEEEEC
Confidence 8765444444432 379887654211 44555555677888888888763 247898999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
||. .+.+.+++.+|||.+-+||+++.
T Consensus 288 GI~t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 288 GISSGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred CCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence 995 99999999999999999999874
No 123
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.18 E-value=0.00016 Score=64.30 Aligned_cols=204 Identities=21% Similarity=0.266 Sum_probs=139.6
Q ss_pred CCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHH
Q 023494 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDF 134 (281)
Q Consensus 55 ~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~ 134 (281)
+.-+++...+.+.|..+....++..+.+|+++ +||. -.++.|+..|+.+++|+=| =--+|+.|. .+
T Consensus 12 ~~alKVIsGLnNFd~~~V~~i~~AA~~ggAt~--vDIA---------adp~LV~~~~~~s~lPICV--SaVep~~f~-~a 77 (242)
T PF04481_consen 12 RRALKVISGLNNFDAESVAAIVKAAEIGGATF--VDIA---------ADPELVKLAKSLSNLPICV--SAVEPELFV-AA 77 (242)
T ss_pred CcchhheeCccccCHHHHHHHHHHHHccCCce--EEec---------CCHHHHHHHHHhCCCCeEe--ecCCHHHHH-HH
Confidence 33467888899999999999999999999997 4654 3578899999888888765 557888665 47
Q ss_pred HHcCCCEEEEccccc--------ccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-----cCCEEEEEeecCC
Q 023494 135 IKAGADIVSVHCEQS--------STIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-----VVDLVLIMSVNPG 199 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~--------~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-----~vD~IlvmsV~pG 199 (281)
.++|||.|-+.-.+. +.+++-++-++-|+. ..-..+.+-.--|++.-.++.. .+|+|. .+-|
T Consensus 78 V~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQ---TEGg 154 (242)
T PF04481_consen 78 VKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQ---TEGG 154 (242)
T ss_pred HHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEE---cCCC
Confidence 889999999883211 122344444455543 3334444433335544333322 378885 3545
Q ss_pred CCCCccchhHHHHHHHHHHHhh-----hcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHH---HHHH
Q 023494 200 FGGQSFIESQVKKISDLRRMCL-----EKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI---KGIK 271 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~-----~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~---~~l~ 271 (281)
...+++.+.++..|++...-+. .+..+++|--.-|++.=|++..+.+||.++=+||+|-+-.|..+.+ +.++
T Consensus 155 tss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~PmAiaaGAsGVGVGSavn~Ln~~~aMva~vr~l~ 234 (242)
T PF04481_consen 155 TSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAPMAIAAGASGVGVGSAVNRLNDEVAMVAAVRSLV 234 (242)
T ss_pred CCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHHHHHHcCCcccchhHHhhhcccHHHHHHHHHHHH
Confidence 5556666666666655432221 2345678888999999999999999999999999999888776544 4444
Q ss_pred HhcC
Q 023494 272 TSKR 275 (281)
Q Consensus 272 ~~~~ 275 (281)
+.+.
T Consensus 235 ~al~ 238 (242)
T PF04481_consen 235 EALS 238 (242)
T ss_pred HHHh
Confidence 4444
No 124
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=98.15 E-value=7.3e-05 Score=73.68 Aligned_cols=194 Identities=14% Similarity=0.160 Sum_probs=133.6
Q ss_pred EeEEE--eccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 60 VSPSI--LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 60 i~pSi--la~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
-|||- ++-++ +..+..+.+ +.|+..|-+ .-|.+| |.=..+.++.+|+.++.|+...=.+-||. -+.....+
T Consensus 59 aSPs~G~i~~~~-d~~~~a~~y-~~gA~aiSV-lTe~~~---F~Gs~~~l~~vr~~v~~PvLrKDFiid~~-QI~ea~~~ 131 (454)
T PRK09427 59 ASPSKGLIRDDF-DPAEIARVY-KHYASAISV-LTDEKY---FQGSFDFLPIVRAIVTQPILCKDFIIDPY-QIYLARYY 131 (454)
T ss_pred CCCCCCccCCCC-CHHHHHHHH-HcCCeEEEE-ecCcCc---CCCCHHHHHHHHHhCCCCEEeccccCCHH-HHHHHHHc
Confidence 46764 33332 566666677 677887754 444422 34467778888888788888766677765 35567889
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
|||.|.+-....+.+.+.++++.+++.|+.+-+-++....++ ..++ .++.|.+=..+ ...-... ++.-.++
T Consensus 132 GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~---~al~~~a~iiGiNnRd--L~t~~vd---~~~~~~l 203 (454)
T PRK09427 132 GADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELE---RAIALGAKVIGINNRN--LRDLSID---LNRTREL 203 (454)
T ss_pred CCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHH---HHHhCCCCEEEEeCCC--CccceEC---HHHHHHH
Confidence 999999988765445799999999999999999997444443 3333 46666442221 1111122 3444555
Q ss_pred HHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
..++++ +..+..-+||+ ++.+..+.. |+|.+.+|+++.+++||.+.+++|..
T Consensus 204 ~~~ip~---~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~~~~~~~L~~ 256 (454)
T PRK09427 204 APLIPA---DVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAEDDLELAVRKLIL 256 (454)
T ss_pred HhhCCC---CcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCHHHHHHHHhc
Confidence 666653 34455679998 788888755 79999999999999999999998854
No 125
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.14 E-value=3.9e-05 Score=71.50 Aligned_cols=169 Identities=22% Similarity=0.205 Sum_probs=106.7
Q ss_pred ceEeEEEecc-CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc----c------CCH----HHHHHcCcCCCCCeeEEE
Q 023494 58 IIVSPSILSA-NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI----T------IGP----LVVDALRPVTDLPLDVHL 122 (281)
Q Consensus 58 ~~i~pSila~-D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~----~------~G~----~~I~~ir~~t~~~idaHL 122 (281)
.-+..|+.+. |..++.+.++.+++.|+|+|++.+- .||. . ..+ ++++.+|+.+++|+.+-|
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~s----CP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl 175 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFS----CPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKL 175 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECC----CCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEEC
Confidence 4578999998 8888888888998889999888633 2432 1 112 335555665667877743
Q ss_pred Eec--ChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC
Q 023494 123 MIV--EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 200 (281)
Q Consensus 123 mv~--dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~ 200 (281)
--+ +...+++.+.++|+|.|+++--.. + ..++.+....+. .. +---+..-|+
T Consensus 176 ~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~---------------~-~~~id~~~~~~~----~~------~~~~~~~gg~ 229 (299)
T cd02940 176 TPNITDIREIARAAKEGGADGVSAINTVN---------------S-LMGVDLDGTPPA----PG------VEGKTTYGGY 229 (299)
T ss_pred CCCchhHHHHHHHHHHcCCCEEEEecccc---------------c-ccccccccCCcc----cc------ccCCCCcCcc
Confidence 211 122344555666777766552210 0 011111110000 00 0000122367
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+|....|..++.|.++++.++ .+++|...|||. .+.+.+++.+|||.+-+||+++.
T Consensus 230 sG~a~~p~~l~~v~~~~~~~~---~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 230 SGPAVKPIALRAVSQIARAPE---PGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred cCCCcchHHHHHHHHHHHhcC---CCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 787778889999999988763 247899999999 88999999999999999999886
No 126
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.13 E-value=0.00012 Score=69.39 Aligned_cols=149 Identities=18% Similarity=0.201 Sum_probs=99.7
Q ss_pred HHHHcCcCCCCCeeEEEEecChhhH---HHHHHHcCCCEEEEccccccc----------ccHHHHHHHHHHc-CCcEEEE
Q 023494 106 VVDALRPVTDLPLDVHLMIVEPEQR---VPDFIKAGADIVSVHCEQSST----------IHLHRTLNQIKDL-GAKAGVV 171 (281)
Q Consensus 106 ~I~~ir~~t~~~idaHLmv~dp~~~---i~~~~~aGAd~Itvh~Ea~~~----------~~i~~~l~~ik~~-G~k~Gla 171 (281)
.++.+++..+.|+.+.+.-.++..+ .+.+.++|+|++.+|.-+.+. +...+.++.+++. .+-+.+=
T Consensus 92 ~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vK 171 (334)
T PRK07565 92 LIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVK 171 (334)
T ss_pred HHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEE
Confidence 3444444457899999988888755 445667899999997532100 1255677888765 5666666
Q ss_pred ECCCC-CHHHHHHhhc--cCCEEEEEeecC---------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 172 LNPAT-SLSAIECVLD--VVDLVLIMSVNP---------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 172 i~p~t-~ie~~~~~l~--~vD~IlvmsV~p---------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
+.|.. .+..+...+. .+|.|.+....+ |++|....|..++.++++++.. +++|..-|
T Consensus 172 l~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~-----~ipIig~G 246 (334)
T PRK07565 172 LSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV-----GADLAATT 246 (334)
T ss_pred eCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc-----CCCEEEEC
Confidence 77763 3444444333 388886643211 2234344456666666665543 47888999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
||. .+.+.+++.+|||.+=+||+++.
T Consensus 247 GI~s~~Da~e~l~aGA~~V~v~t~~~~ 273 (334)
T PRK07565 247 GVHDAEDVIKMLLAGADVVMIASALLR 273 (334)
T ss_pred CCCCHHHHHHHHHcCCCceeeehHHhh
Confidence 998 88999999999999999999886
No 127
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=98.11 E-value=0.00016 Score=65.23 Aligned_cols=192 Identities=19% Similarity=0.220 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeC-cccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDG-RFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
...+.++.+.+.|+++|++--... ..+|.+.-..+.++.+++.. +.++-+ |+.+..+.++.+.++|++.|.+....
T Consensus 20 ~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~--l~~~~~~~i~~a~~~g~~~i~i~~~~ 97 (265)
T cd03174 20 DKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQA--LVRNREKGIERALEAGVDEVRIFDSA 97 (265)
T ss_pred HHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEE--EccCchhhHHHHHhCCcCEEEEEEec
Confidence 344556778889999998832211 11123355667888888753 444444 55444668999999999999998764
Q ss_pred c--------------ccccHHHHHHHHHHcCCcEEEEECCCC----CHHHHHHhhc-----cCCEEEEEeecCCCCCCcc
Q 023494 149 S--------------STIHLHRTLNQIKDLGAKAGVVLNPAT----SLSAIECVLD-----VVDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 149 ~--------------~~~~i~~~l~~ik~~G~k~Glai~p~t----~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~f 205 (281)
. ..+...+.++.+++.|+.+.+.+...+ +.+.+.++++ .+|.|.+. ...|...
T Consensus 98 s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~----Dt~G~~~ 173 (265)
T cd03174 98 SETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK----DTVGLAT 173 (265)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec----hhcCCcC
Confidence 2 134567888889999999988764333 3444444433 27777653 2245433
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEec----CCChhcHHHHHHcCCcEEEEc-ccc---cCCCCHHHHHHHHHH
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDG----GVGPKNAYKVIEAGANALVAG-SAV---FGAKDYAEAIKGIKT 272 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDG----GI~~e~i~~~~~aGAD~~VvG-SaI---f~a~dp~~~~~~l~~ 272 (281)
..+..+.++.+++..+ +.++.+=+ |....|.-..+++||+.+=.. ..+ .++.+.+..+..++.
T Consensus 174 P~~v~~li~~l~~~~~----~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~ 244 (265)
T cd03174 174 PEEVAELVKALREALP----DVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEG 244 (265)
T ss_pred HHHHHHHHHHHHHhCC----CCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHh
Confidence 3444556777776653 25677744 888889999999999986322 111 223444555555544
No 128
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=98.11 E-value=0.00041 Score=61.68 Aligned_cols=173 Identities=25% Similarity=0.340 Sum_probs=114.1
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCccccc--ccCCHHHHHHcCcC-CCCCeeEEEEecChhhH-HHHHHHcCCCEEEEc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPN--ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVH 145 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn--~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~-i~~~~~aGAd~Itvh 145 (281)
.++ +.++.+.+.|+|++=+ .|.|. -...++..+.|.+. ++... |=..++.+... .+.+.+.+.|.|=+|
T Consensus 10 t~~-eda~~a~~~gad~iG~-----If~~~SpR~Vs~~~a~~i~~~v~~~~~-VgVf~n~~~~~i~~i~~~~~ld~VQlH 82 (208)
T COG0135 10 TRL-EDAKAAAKAGADYIGF-----IFVPKSPRYVSPEQAREIASAVPKVKV-VGVFVNESIEEILEIAEELGLDAVQLH 82 (208)
T ss_pred CCH-HHHHHHHHcCCCEEEE-----EEcCCCCCcCCHHHHHHHHHhCCCCCE-EEEECCCCHHHHHHHHHhcCCCEEEEC
Confidence 345 4466777889998744 33342 14467777777665 33343 33455555544 455677889999999
Q ss_pred ccccccccHHHHHHHHHHc-CCcEEEEECCCCC--HHHHHHhhccCCEEEEEeec---CCCCCCccchhHHHHHHHHHHH
Q 023494 146 CEQSSTIHLHRTLNQIKDL-GAKAGVVLNPATS--LSAIECVLDVVDLVLIMSVN---PGFGGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 146 ~Ea~~~~~i~~~l~~ik~~-G~k~Glai~p~t~--ie~~~~~l~~vD~IlvmsV~---pG~~GQ~f~~~~l~kI~~lr~l 219 (281)
.+- ..+.++.+|+. ++++.-+++.... .+....+...+|++++=+-. +|-+||.|.-..+... +
T Consensus 83 G~e-----~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~---~-- 152 (208)
T COG0135 83 GDE-----DPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL---R-- 152 (208)
T ss_pred CCC-----CHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc---c--
Confidence 863 23456666765 4777777665543 55566666679999885543 4667899876665443 1
Q ss_pred hhhcCCCCeEEEecCCChhcHHHHHHcCC-cEEEEcccccCC---CCHH
Q 023494 220 CLEKGVNPWIEVDGGVGPKNAYKVIEAGA-NALVAGSAVFGA---KDYA 264 (281)
Q Consensus 220 ~~~~~~~~~I~VDGGI~~e~i~~~~~aGA-D~~VvGSaIf~a---~dp~ 264 (281)
...++...||+|++|+.++++.+. .++=+-|.+=.+ .|+.
T Consensus 153 -----~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSSGVE~~pG~KD~~ 196 (208)
T COG0135 153 -----LSKPVMLAGGLNPDNVAEAIALGPPYGVDVSSGVESSPGIKDPA 196 (208)
T ss_pred -----ccCCEEEECCCCHHHHHHHHHhcCCceEEeccccccCCCCCCHH
Confidence 123578999999999999999888 777677776433 5665
No 129
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.09 E-value=0.00012 Score=68.83 Aligned_cols=147 Identities=20% Similarity=0.335 Sum_probs=97.6
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCccccc---------------ccCCHHHHHHcCcCCCCCeeEE
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------------ITIGPLVVDALRPVTDLPLDVH 121 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---------------~~~G~~~I~~ir~~t~~~idaH 121 (281)
+.-+.++|...|+..+.++.+.+.++|+|.|.+-. | .|. ..+-.++++.+|+.+++|+.+.
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~--g--cP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vK 137 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINM--G--CPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVK 137 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEC--C--CCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEE
Confidence 45688999999999999999999999999875531 2 121 1223356677777677787775
Q ss_pred EEe---c---ChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEe
Q 023494 122 LMI---V---EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMS 195 (281)
Q Consensus 122 Lmv---~---dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilvms 195 (281)
+-. . +..++++.+.++|+|.+++|... .
T Consensus 138 ir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~----------------------------~------------------ 171 (319)
T TIGR00737 138 IRIGWDDAHINAVEAARIAEDAGAQAVTLHGRT----------------------------R------------------ 171 (319)
T ss_pred EEcccCCCcchHHHHHHHHHHhCCCEEEEEccc----------------------------c------------------
Confidence 432 1 12234555666777777776421 0
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH-HcCCcEEEEcccccCCCCH
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI-EAGANALVAGSAVFGAKDY 263 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~-~aGAD~~VvGSaIf~a~dp 263 (281)
..|+.|. ..++.++++++.. +++|.+-|||+ .+.+.+++ ..|+|.+.+|++++..+..
T Consensus 172 -~~~~~~~----~~~~~i~~i~~~~-----~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l 231 (319)
T TIGR00737 172 -AQGYSGE----ANWDIIARVKQAV-----RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWL 231 (319)
T ss_pred -cccCCCc----hhHHHHHHHHHcC-----CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChH
Confidence 0122221 2245566666543 36899999998 88999888 6899999999999875543
No 130
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=98.08 E-value=3.1e-05 Score=69.75 Aligned_cols=182 Identities=26% Similarity=0.343 Sum_probs=105.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
|-...++.++.+.+.|.|.+-|. |.. .+.++ .+++..+|+.+++|+..+ ..++... --+||.+.|..-
T Consensus 17 dK~~~~~~~~~~~~~gtDai~VG---GS~-~~~~~-d~vv~~ik~~~~lPvilf--Pg~~~~v-----s~~aDail~~sv 84 (230)
T PF01884_consen 17 DKPNPEEALEAACESGTDAIIVG---GSD-TGVTL-DNVVALIKRVTDLPVILF--PGSPSQV-----SPGADAILFPSV 84 (230)
T ss_dssp TSS-HHHHHHHHHCTT-SEEEEE----ST-HCHHH-HHHHHHHHHHSSS-EEEE--TSTCCG-------TTSSEEEEEEE
T ss_pred CCCCcHHHHHHHHhcCCCEEEEC---CCC-Cccch-HHHHHHHHhcCCCCEEEe--CCChhhc-----CcCCCEEEEEEE
Confidence 44567788888889999998773 432 23332 456778888888897764 5554433 257999999843
Q ss_pred cccc------ccHHHHHHHHHHcCCcE----EEEECCCCCHHHHHHhh-------------c------cCCEEEEEeecC
Q 023494 148 QSST------IHLHRTLNQIKDLGAKA----GVVLNPATSLSAIECVL-------------D------VVDLVLIMSVNP 198 (281)
Q Consensus 148 a~~~------~~i~~~l~~ik~~G~k~----Glai~p~t~ie~~~~~l-------------~------~vD~IlvmsV~p 198 (281)
-.+. ..-.+.+..+++.+.++ .+.+||+..+..+-.-- . ...+|.+ +-
T Consensus 85 lNs~n~~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~~~iYL---Ea 161 (230)
T PF01884_consen 85 LNSRNPYWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPEIAAAAALAAEYLGMPIIYL---EA 161 (230)
T ss_dssp TTBSSTTTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHHHHHHHHHHHHHTT-SEEEE---E-
T ss_pred ecCCCcchHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCCcHHHHHHHHHHHHHhCCCEEEE---Ee
Confidence 2111 11234556677777765 36788765442221110 0 0234443 55
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
|-+-..-.| +.+.+.++... +.++.|.|||+ .|.+.++.++|||++|+|.++.+..+.++.++.++
T Consensus 162 GSGa~~~v~---~~v~~~~~~~~----~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~i~ 228 (230)
T PF01884_consen 162 GSGAYGPVP---EEVIAAVKKLS----DIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALETIK 228 (230)
T ss_dssp -TTSSS-HH---HHHHHHHHHSS----SSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTHHH
T ss_pred CCCCCCCcc---HHHHHHHHhcC----CccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHHHh
Confidence 543322222 33444444432 47899999999 88999999999999999999997655566665554
No 131
>PRK06801 hypothetical protein; Provisional
Probab=98.06 E-value=0.0002 Score=66.57 Aligned_cols=185 Identities=11% Similarity=0.117 Sum_probs=116.7
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcc--cccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRF--VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~f--vpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
.|+..+.-.++.+++.+...| +-+-.++. .+ +..-...++.+.+....|+-+||==......++.++++|++.|-+
T Consensus 26 ~n~e~~~avi~AAe~~~~PvI-l~~~~~~~~~~~-~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~ 103 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSPFI-INIAEVHFKYIS-LESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMF 103 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEE-EEeCcchhhcCC-HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEE
Confidence 355556667778888877765 44444432 21 111122334444445689999985544445788899999998887
Q ss_pred cccccc-cc---cHHHHHHHHHHcCCcEEEE---E---------C-----CCCCHHHHHHhhc--cCCEEEEEeecCCCC
Q 023494 145 HCEQSS-TI---HLHRTLNQIKDLGAKAGVV---L---------N-----PATSLSAIECVLD--VVDLVLIMSVNPGFG 201 (281)
Q Consensus 145 h~Ea~~-~~---~i~~~l~~ik~~G~k~Gla---i---------~-----p~t~ie~~~~~l~--~vD~IlvmsV~pG~~ 201 (281)
=.-..+ .+ ...++.+.++.+|+.+-.. + . ..|..+...++.+ .+|++.+ ++-+--+
T Consensus 104 D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAv-aiGt~Hg 182 (286)
T PRK06801 104 DGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAV-AIGNAHG 182 (286)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEe-ccCCCCC
Confidence 432211 11 2345666688888765211 1 1 1345566777764 5899887 4422111
Q ss_pred CCccc-hhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEcccccC
Q 023494 202 GQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 202 GQ~f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
-.+.. +-.+++++++++.. ++++..-|| |+.+++++++++|++.+-++|.++.
T Consensus 183 ~y~~~~~l~~e~l~~i~~~~-----~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~ 238 (286)
T PRK06801 183 KYKGEPKLDFARLAAIHQQT-----GLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQ 238 (286)
T ss_pred CCCCCCCCCHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHH
Confidence 11122 24467777777654 368999999 9999999999999999999999985
No 132
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.05 E-value=4e-05 Score=70.82 Aligned_cols=94 Identities=16% Similarity=0.251 Sum_probs=67.0
Q ss_pred cHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 153 HLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 153 ~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
.+.+.++.+|+. ..++-+.+. .+|+..+.++. +|+|++ ++ |.++.+ +++.++++....+..
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~VEv~---tleea~~A~~~GaDiI~L-------Dn--~~~e~l---~~~v~~~~~~~~~~~ 231 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEIECE---SLEEAKNAMNAGADIVMC-------DN--MSVEEI---KEVVAYRNANYPHVL 231 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEEEeC---CHHHHHHHHHcCCCEEEE-------CC--CCHHHH---HHHHHHhhccCCCeE
Confidence 467888888875 255666553 66666666664 898874 23 445544 444444433334578
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
+++-||||++|++++.+.|+|++++|+.+.++.
T Consensus 232 ieAsGgIt~~ni~~ya~~GvD~IsvG~l~~sa~ 264 (273)
T PRK05848 232 LEASGNITLENINAYAKSGVDAISSGSLIHQAT 264 (273)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 999999999999999999999999999988653
No 133
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.05 E-value=0.00012 Score=65.77 Aligned_cols=166 Identities=20% Similarity=0.299 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccC-C-HHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITI-G-PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~-G-~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
..+.++.+.+.|.|.|-| |+. .+++. . .+.++.+|+.+ +|+.. -..|+... --+||.+.|..--.
T Consensus 16 ~~~~~~~~~~~gtdai~v----GGS-~~vt~~~~~~~v~~ik~~~-lPvil--fp~~~~~i-----~~~aDa~l~~svlN 82 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILI----GGS-QGVTYEKTDTLIEALRRYG-LPIIL--FPSNPTNV-----SRDADALFFPSVLN 82 (223)
T ss_pred cHHHHHHHHhcCCCEEEE----cCC-CcccHHHHHHHHHHHhccC-CCEEE--eCCCcccc-----CcCCCEEEEEEeec
Confidence 346678888899998866 332 22221 2 23578888765 77765 55665433 34799999885321
Q ss_pred c-cccH-----HHHHHHHHHcCCcE----EEEECCCCCHHHHHH-------------hhcc------CCEEEEEeecCC-
Q 023494 150 S-TIHL-----HRTLNQIKDLGAKA----GVVLNPATSLSAIEC-------------VLDV------VDLVLIMSVNPG- 199 (281)
Q Consensus 150 ~-~~~i-----~~~l~~ik~~G~k~----Glai~p~t~ie~~~~-------------~l~~------vD~IlvmsV~pG- 199 (281)
+ ..+. .+.+..+++.+.++ .+.+||+..+..+-. +... ..+|.+ +.|
T Consensus 83 s~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYl---E~gs 159 (223)
T TIGR01768 83 SDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYL---EAGS 159 (223)
T ss_pred CCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEE---EecC
Confidence 1 1111 23455556666443 356776644322111 1110 122322 433
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
..|++-.++.++++ ++... +.+|.+.|||+ .++++.+.++|||.+|+||.+++.
T Consensus 160 ~~g~~v~~e~i~~v---~~~~~----~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 160 GAPEPVPPELVAEV---KKVLD----KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred CCCCCcCHHHHHHH---HHHcC----CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 33555556655554 44432 36899999999 899999999999999999999963
No 134
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=98.04 E-value=1.5e-05 Score=73.11 Aligned_cols=160 Identities=15% Similarity=0.123 Sum_probs=97.4
Q ss_pred cCCHHHH-------HHcCcCCCCCeeEEEEecChh----hHHHHHH-HcCCCEEEEcccccccccHHHHHHHHHHcCCcE
Q 023494 101 TIGPLVV-------DALRPVTDLPLDVHLMIVEPE----QRVPDFI-KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA 168 (281)
Q Consensus 101 ~~G~~~I-------~~ir~~t~~~idaHLmv~dp~----~~i~~~~-~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~ 168 (281)
.+|++.+ +.+++. ++++.+|+|..|.. .|.+.++ ..|+|.+|+|.-.. .+.+..+++..++.|..+
T Consensus 66 ~~G~~gi~~l~~~~~~~~~~-g~~VilD~K~~DIpnTv~~~a~a~~~~~g~D~vTvh~~~G-~d~l~~~~~~~~~~~~~v 143 (261)
T TIGR02127 66 RFGSEGFKALEEVIAHARSL-GLPVLADVKRGDIGSTASAYAKAWLGHLHADALTVSPYLG-LDSLRPFLEYARANGAGI 143 (261)
T ss_pred hcCHHHHHHHHHHHHHHHHC-CCeEEEEeeccChHHHHHHHHHHHHhhcCCCEEEECCcCC-HHHHHHHHHHHhhcCCEE
Confidence 7899888 444443 68899999999986 4666666 78999999998653 566778888888888877
Q ss_pred EEEECCCCCH-HHHHHhh-----ccCCEEEEEee----cC---CCCCCccchhH-HHHHHHHHHHhhhcCCCCeEEEecC
Q 023494 169 GVVLNPATSL-SAIECVL-----DVVDLVLIMSV----NP---GFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGG 234 (281)
Q Consensus 169 Glai~p~t~i-e~~~~~l-----~~vD~IlvmsV----~p---G~~GQ~f~~~~-l~kI~~lr~l~~~~~~~~~I~VDGG 234 (281)
++....+.|- ..++... +..+.|.-+.. .+ |..|--- +.+ .+.++++|+.++ +++| +-.|
T Consensus 144 ~VlvlTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~-gAT~p~e~~~iR~~~~----~~~i-l~PG 217 (261)
T TIGR02127 144 FVLVKTSNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVV-GATSPGDLLRLRIEMP----TAPF-LVPG 217 (261)
T ss_pred EEEEeCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEE-CCCCHHHHHHHHHhCC----CCeE-EeCC
Confidence 7766545422 2232210 00111111100 11 1112111 111 344566666653 2444 6777
Q ss_pred CChh-----cHHHHH-HcCCc-EEEEcccccCCCCHHHHHH
Q 023494 235 VGPK-----NAYKVI-EAGAN-ALVAGSAVFGAKDYAEAIK 268 (281)
Q Consensus 235 I~~e-----~i~~~~-~aGAD-~~VvGSaIf~a~dp~~~~~ 268 (281)
|.++ ....+. +.|+| .+|+|+.|+.+.||.++++
T Consensus 218 igaqG~~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a~~ 258 (261)
T TIGR02127 218 FGAQGAEAADLRGLFGADGSGLLINSSRGVLFAGPRSSALV 258 (261)
T ss_pred cCCCCCCHHHHHHHhcccCCCEEEEcCHHHhcCCChHHHHH
Confidence 7743 344322 36888 8999999999999977654
No 135
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=98.04 E-value=1.5e-05 Score=68.73 Aligned_cols=93 Identities=17% Similarity=0.274 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcC--C-cEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDLG--A-KAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~G--~-k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+.+.++.+|+.- . ++.+.. . ..+.+++.++ .+|.|++ ..|.|+.+ +++.+.+...+.++.|
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv--~-~~ee~~ea~~~g~d~I~l---------D~~~~~~~---~~~v~~l~~~~~~v~i 130 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEV--E-NLEEAEEALEAGADIIML---------DNMSPEDL---KEAVEELRELNPRVKI 130 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEE--S-SHHHHHHHHHTT-SEEEE---------ES-CHHHH---HHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHhCCCCceEEEEc--C-CHHHHHHHHHhCCCEEEe---------cCcCHHHH---HHHHHHHhhcCCcEEE
Confidence 667788888752 2 344444 3 3566666555 5899876 12445444 4444444444556899
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++.||||++|+.++.+.|+|++.+|+.+.+++
T Consensus 131 e~SGGI~~~ni~~ya~~gvD~isvg~~~~~a~ 162 (169)
T PF01729_consen 131 EASGGITLENIAEYAKTGVDVISVGSLTHSAP 162 (169)
T ss_dssp EEESSSSTTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred EEECCCCHHHHHHHHhcCCCEEEcChhhcCCc
Confidence 99999999999999999999999999887653
No 136
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.04 E-value=9.1e-05 Score=65.72 Aligned_cols=165 Identities=22% Similarity=0.224 Sum_probs=96.7
Q ss_pred cCccCH---HHHHHHHHHcCCCeEEEEeeeCcccccccC--CHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCE
Q 023494 67 ANFAKL---GEQVKAVELAGCDWIHVDVMDGRFVPNITI--GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 67 ~D~~~l---~~~l~~l~~~G~d~iHiDImDG~fvpn~~~--G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~ 141 (281)
+|+.+. ++.++.+.+.|.|.|.+. |+ .+++. =.++++.+|+.+++|+.+ ...|+... --+||.
T Consensus 5 iDP~k~e~~~~ia~~v~~~gtDaI~VG---GS--~gvt~~~~~~~v~~ik~~~~lPvil--fp~~~~~i-----~~~aD~ 72 (205)
T TIGR01769 5 IDPEKSDEIEKIAKNAKDAGTDAIMVG---GS--LGIVESNLDQTVKKIKKITNLPVIL--FPGNVNGL-----SRYADA 72 (205)
T ss_pred cCCCcHHHHHHHHHHHHhcCCCEEEEc---Cc--CCCCHHHHHHHHHHHHhhcCCCEEE--ECCCcccc-----CcCCCE
Confidence 466664 233337788999998774 22 11211 123578889888888876 45554422 347999
Q ss_pred EEEcccccc-ccc--HHH---HHHHHHHcCCcE----EEEECCC--------------CCHHHHHHhhcc-----CCEEE
Q 023494 142 VSVHCEQSS-TIH--LHR---TLNQIKDLGAKA----GVVLNPA--------------TSLSAIECVLDV-----VDLVL 192 (281)
Q Consensus 142 Itvh~Ea~~-~~~--i~~---~l~~ik~~G~k~----Glai~p~--------------t~ie~~~~~l~~-----vD~Il 192 (281)
+.|..--.+ ..+ +.. .+-.+|+.|.++ .+.+||+ .+.|....|... .++|.
T Consensus 73 ~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~ 152 (205)
T TIGR01769 73 VFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVY 152 (205)
T ss_pred EEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 998853211 111 122 222337777643 3445533 344555555432 45554
Q ss_pred EEeec-CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 193 IMSVN-PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 193 vmsV~-pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
+ .. -|+ +..-. .+.++++|+.. +.++.|.|||+ +++++++.++|||.+|+|
T Consensus 153 L--e~~sGa-~~~v~---~e~i~~Vk~~~-----~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 153 L--EAGSGA-SYPVN---PETISLVKKAS-----GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred E--EcCCCC-CCCCC---HHHHHHHHHhh-----CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 4 22 233 22222 44455555554 36899999996 899999999999999998
No 137
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.04 E-value=0.00018 Score=68.52 Aligned_cols=210 Identities=21% Similarity=0.275 Sum_probs=130.4
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEe-----ee-------------CcccccccC---CHH-HHHHcCcC-CCCCe
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDV-----MD-------------GRFVPNITI---GPL-VVDALRPV-TDLPL 118 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDI-----mD-------------G~fvpn~~~---G~~-~I~~ir~~-t~~~i 118 (281)
|-++|+=+..-.+.++.+.+.|...+.+-= -. ..+.+.+.+ |.+ +++.+++. .+.|+
T Consensus 61 Pi~~AsG~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pv 140 (344)
T PRK05286 61 PVGLAAGFDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPL 140 (344)
T ss_pred CCEECCCCCCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcE
Confidence 555666566666888888888888776520 01 122222333 233 45556553 46788
Q ss_pred eEEEEec-------ChhhHHHHHHHcC--CCEEEEccccc---------ccccHHHHHHHHHHc-C-----CcEEEEECC
Q 023494 119 DVHLMIV-------EPEQRVPDFIKAG--ADIVSVHCEQS---------STIHLHRTLNQIKDL-G-----AKAGVVLNP 174 (281)
Q Consensus 119 daHLmv~-------dp~~~i~~~~~aG--Ad~Itvh~Ea~---------~~~~i~~~l~~ik~~-G-----~k~Glai~p 174 (281)
.+-+.-+ .+.+|.+.+.+++ ||++-+-.-+. ..+.+.++++++|+. + +-+.+=+.|
T Consensus 141 ivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp 220 (344)
T PRK05286 141 GINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAP 220 (344)
T ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCC
Confidence 8888654 3456776665555 99988764321 012466788888874 4 678888888
Q ss_pred CCCHHHHHHhhc-----cCCEEEEEeecC---------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC
Q 023494 175 ATSLSAIECVLD-----VVDLVLIMSVNP---------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (281)
Q Consensus 175 ~t~ie~~~~~l~-----~vD~IlvmsV~p---------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG 234 (281)
+...+.+.++.+ .+|.|.+....+ |+.|....+..++.++++++... .+++|..-||
T Consensus 221 ~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~---~~ipIig~GG 297 (344)
T PRK05286 221 DLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELG---GRLPIIGVGG 297 (344)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhC---CCCCEEEECC
Confidence 866544444332 378887754321 22333333556777777776542 2478889999
Q ss_pred CC-hhcHHHHHHcCCcEEEEcccccC-CCCH-HHHHHHHHHhc
Q 023494 235 VG-PKNAYKVIEAGANALVAGSAVFG-AKDY-AEAIKGIKTSK 274 (281)
Q Consensus 235 I~-~e~i~~~~~aGAD~~VvGSaIf~-a~dp-~~~~~~l~~~~ 274 (281)
|. .+.+.+++.+|||.+-+||+++. .++. .+..+.|.+.+
T Consensus 298 I~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l 340 (344)
T PRK05286 298 IDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLL 340 (344)
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 99 88999999999999999999864 2433 23334444443
No 138
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.03 E-value=0.0002 Score=68.94 Aligned_cols=133 Identities=21% Similarity=0.294 Sum_probs=84.4
Q ss_pred hhHHHHHHHcCCCEEEEccccc-----ccc-cHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC
Q 023494 128 EQRVPDFIKAGADIVSVHCEQS-----STI-HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF 200 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~-----~~~-~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~ 200 (281)
.++++.+.++|+|.+++|.-.. ... ++..+.+.+++.++.+.. ..-...+..+.+++ .+|.|.+ ...||.
T Consensus 144 ~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa--G~V~t~e~A~~l~~aGAD~V~V-G~G~Gs 220 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV--GGCVTYTTALHLMRTGAAGVLV-GIGPGA 220 (368)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE--eCCCCHHHHHHHHHcCCCEEEE-CCCCCc
Confidence 4567788999999999996310 011 467778888888777633 12234555566555 5999966 566652
Q ss_pred --CCCcc----chhHHHHHHHHHH----Hhhh-cCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 201 --GGQSF----IESQVKKISDLRR----MCLE-KGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 201 --~GQ~f----~~~~l~kI~~lr~----l~~~-~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
..... .| .+.-|.+..+ ++.+ .+.+++|..||||. ...+.+.+.+|||.+.+||.+... |.|.
T Consensus 221 ~~~t~~~~g~g~p-~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg 296 (368)
T PRK08649 221 ACTSRGVLGIGVP-MATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG 296 (368)
T ss_pred CCCCcccCCCCcC-HHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCC
Confidence 11111 12 2223333322 2211 12257899999998 779999999999999999998863 4443
No 139
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.02 E-value=0.00017 Score=69.37 Aligned_cols=131 Identities=20% Similarity=0.243 Sum_probs=82.6
Q ss_pred ChhhHHHHHHHcCCCEEEEcccc------cccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecC
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQ------SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNP 198 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea------~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~p 198 (281)
+..++.+.+.++|+|.|++|.-. ....++..+.+.+++.++.+.. ..-...+...++++ .+|.|++. +-
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~--G~V~t~e~A~~~~~aGaDgV~~G--~g 218 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA--GGVNDYTTALHLMRTGAAGVIVG--PG 218 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE--eCCCCHHHHHHHHHcCCCEEEEC--CC
Confidence 44467788899999999999421 0123466677777778776643 22345566666665 59998732 11
Q ss_pred CC-CCCcc----ch--hHHHHHHHHH-HHhhhcC-CCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 199 GF-GGQSF----IE--SQVKKISDLR-RMCLEKG-VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 199 G~-~GQ~f----~~--~~l~kI~~lr-~l~~~~~-~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
|. ..... .| ..+..+...+ +++++.+ ..++|..||||. .+.+.+.+.+|||.+.+|+.+...
T Consensus 219 g~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a 290 (369)
T TIGR01304 219 GANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARA 290 (369)
T ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhh
Confidence 11 11111 22 1233333332 2333333 247888999999 779999999999999999998864
No 140
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.02 E-value=0.00014 Score=65.11 Aligned_cols=172 Identities=16% Similarity=0.146 Sum_probs=99.8
Q ss_pred EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH--cCCCE
Q 023494 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK--AGADI 141 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~--aGAd~ 141 (281)
.+..|+..+. +.+.+.|+|++|+==.|+. ....-..+++++|.+.+ |+.+.==+.+.+ .++.+.. .||+.
T Consensus 33 ~~~~dP~~~a---~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~~--~v~vgGGirs~e-~~~~~~~~l~~a~r 104 (221)
T TIGR00734 33 RLSSSPDDAA---KVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKRV--ELIADCGVRSPE-DLETLPFTLEFASR 104 (221)
T ss_pred ecCCCHHHHH---HHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhhC--cEEEcCccCCHH-HHHHHHhhhccceE
Confidence 4456665554 4555789999998555663 23344567888887653 333322233333 2334422 36999
Q ss_pred EEEcccccccccHHHHHHHHHHcCCcEEEEECCCC--------CHHHHHHhhcc--CCEEEEEeecC-CCCCCccchhHH
Q 023494 142 VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT--------SLSAIECVLDV--VDLVLIMSVNP-GFGGQSFIESQV 210 (281)
Q Consensus 142 Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t--------~ie~~~~~l~~--vD~IlvmsV~p-G~~GQ~f~~~~l 210 (281)
|.+.-++ .++++ +++.+ ..-+++...... ..+.+.+++.. + .++++.+.- |. .+.+. +
T Consensus 105 vvigT~a--~~~p~-~l~~~---~~vvslD~~~g~v~~~g~~~~~~~~~~~~~~~g~-~ii~tdI~~dGt-~~G~d---~ 173 (221)
T TIGR00734 105 VVVATET--LDITE-LLREC---YTVVSLDFKEKFLDASGLFESLEEVRDFLNSFDY-GLIVLDIHSVGT-MKGPN---L 173 (221)
T ss_pred EeecChh--hCCHH-HHHHh---hhEEEEEeECCccccccccccHHHHHHHHHhcCC-EEEEEECCcccc-CCCCC---H
Confidence 9998885 34443 23222 234555543211 12222222221 3 455565543 32 22232 4
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+-++++++.. +.++.+.|||+ ++.+.++.+.|||.+++|++++.
T Consensus 174 eli~~i~~~~-----~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 174 ELLTKTLELS-----EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 4455555543 36889999999 88999999999999999999875
No 141
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.02 E-value=0.00019 Score=66.86 Aligned_cols=143 Identities=12% Similarity=0.126 Sum_probs=95.4
Q ss_pred HHcCcCCCCCeeEEEEec-Chhh---HHHHHHHcCCCEEEEcccccccc---cHHHHHHHHHHc-CCcEEEEECCCCCHH
Q 023494 108 DALRPVTDLPLDVHLMIV-EPEQ---RVPDFIKAGADIVSVHCEQSSTI---HLHRTLNQIKDL-GAKAGVVLNPATSLS 179 (281)
Q Consensus 108 ~~ir~~t~~~idaHLmv~-dp~~---~i~~~~~aGAd~Itvh~Ea~~~~---~i~~~l~~ik~~-G~k~Glai~p~t~ie 179 (281)
+.+++..+.|+-+.|... +|.. .++.+.+.|++.+.+|..+. .. ...+.++++++. ++.+.+-.. .+.+
T Consensus 108 ~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p-~~~~~~~~~~i~~l~~~~~~pvivK~v--~s~~ 184 (299)
T cd02809 108 EEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTP-VLGRRLTWDDLAWLRSQWKGPLILKGI--LTPE 184 (299)
T ss_pred HHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCC-CCCCCCCHHHHHHHHHhcCCCEEEeec--CCHH
Confidence 344443347889998875 7764 35556788999999998752 20 112567777775 666555421 3455
Q ss_pred HHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccc
Q 023494 180 AIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 180 ~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaI 257 (281)
..+...+ .+|.|.+.. +.|. ...+.+.+++-|.++++.+.. +++|.++|||. ...+.+++..|||.+-+|+.+
T Consensus 185 ~a~~a~~~G~d~I~v~~-~gG~-~~~~g~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~ 259 (299)
T cd02809 185 DALRAVDAGADGIVVSN-HGGR-QLDGAPATIDALPEIVAAVGG---RIEVLLDGGIRRGTDVLKALALGADAVLIGRPF 259 (299)
T ss_pred HHHHHHHCCCCEEEEcC-CCCC-CCCCCcCHHHHHHHHHHHhcC---CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 5665555 489987642 2221 112345667777777776532 47899999997 778888899999999999886
Q ss_pred c
Q 023494 258 F 258 (281)
Q Consensus 258 f 258 (281)
+
T Consensus 260 l 260 (299)
T cd02809 260 L 260 (299)
T ss_pred H
Confidence 5
No 142
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=98.01 E-value=0.00012 Score=64.34 Aligned_cols=166 Identities=18% Similarity=0.255 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCCeEEEEeeeCccccc--ccCCHHHHHHcCcCCCCCeeEEEEecChhh-HHHHHHHcCCCEEEEcccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPN--ITIGPLVVDALRPVTDLPLDVHLMIVEPEQ-RVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn--~~~G~~~I~~ir~~t~~~idaHLmv~dp~~-~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+.++.+.+.|+|++=+- |.|+ -...++..++|.+..... -|=++++.+.. ..+.+.+++.|+|-+|...
T Consensus 10 ~da~~~~~~g~d~~Gfi-----~~~~S~R~v~~~~a~~l~~~~~~~-~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e-- 81 (197)
T PF00697_consen 10 EDARLAAELGADYLGFI-----FYPKSPRYVSPDQARELVSAVPPK-IVGVFVNQSPEEILEIVEELGLDVVQLHGDE-- 81 (197)
T ss_dssp HHHHHHHHHTSSEEEEE-------TTCTTB--HHHHHHHHCCSSSS-EEEEESSS-HHHHHHHHHHCTESEEEE-SGG--
T ss_pred HHHHHHHHcCCCEEeee-----cCCCCCCccCHHHHHHHHHhcCCC-EEEEEcCCCHHHHHHHHHHcCCCEEEECCCC--
Confidence 45677778899997552 2333 245778888886653322 44456665544 5666788999999999873
Q ss_pred cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHh--hccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV--LDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~--l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
..++++.++ .++++.-++...........+ ...+|++++= ...|-+|+.|.-+.+.++.+... ..+
T Consensus 82 ---~~e~~~~l~-~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD-~~~GgtG~~~dw~~~~~~~~~~~-------~~p 149 (197)
T PF00697_consen 82 ---SPEYIKLLR-AGLPVIKAIHVDKDIDLLDYLERYESVDYFLLD-SGSGGTGKTFDWSLLKKIVESYS-------PKP 149 (197)
T ss_dssp ----HHHHHHHH-TTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEE-SSSTSSSS---GGGGCCCHHT-G-------TST
T ss_pred ---CHHHHHHhh-cCceEEEEEEeCCccchHHHHHhcccccEEeEc-cCCCcCCcccCHHHhhhhhhhcc-------cCc
Confidence 334555555 577887777766544322222 2235888874 34455688888777666544221 257
Q ss_pred EEEecCCChhcHHHHHH-cCCcEEEEcccccC
Q 023494 229 IEVDGGVGPKNAYKVIE-AGANALVAGSAVFG 259 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf~ 259 (281)
+.+.||||++|+.++++ .++..+=+-|.+=.
T Consensus 150 ~iLAGGl~p~NV~~ai~~~~p~gvDvsSGvE~ 181 (197)
T PF00697_consen 150 VILAGGLNPENVREAIRQVRPYGVDVSSGVET 181 (197)
T ss_dssp EEEESS--TTTHHHHHHHC--SEEEESGGGEE
T ss_pred EEEEcCCChHHHHHHHHhcCceEEEeCCcccc
Confidence 88999999999999988 88888888887743
No 143
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.01 E-value=4.2e-05 Score=70.46 Aligned_cols=89 Identities=15% Similarity=0.284 Sum_probs=64.2
Q ss_pred HHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+...++.+|+. +.++|+..+ .++++.+... .+|||++-. |. ++.++++.+..+. ++++
T Consensus 168 i~~~v~~~r~~~~~~~~Igvev~---s~eea~~A~~~gaDyI~ld~---------~~---~e~l~~~~~~~~~---~ipi 229 (268)
T cd01572 168 ITEAVRRARAAAPFTLKIEVEVE---TLEQLKEALEAGADIIMLDN---------MS---PEELREAVALLKG---RVLL 229 (268)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEC---CHHHHHHHHHcCCCEEEECC---------cC---HHHHHHHHHHcCC---CCcE
Confidence 34556677765 567888886 4555555543 599998721 22 3455666655432 4789
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.||||++|+.++.++|+|++++|+..+++
T Consensus 230 ~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~~a 260 (268)
T cd01572 230 EASGGITLENIRAYAETGVDYISVGALTHSA 260 (268)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEEEeeecCC
Confidence 9999999999999999999999999977754
No 144
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.01 E-value=0.00015 Score=70.47 Aligned_cols=132 Identities=22% Similarity=0.359 Sum_probs=85.4
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE-CCCCCHHHHHHhhc-cCCEEEEEeecCCC--CCCc
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQS 204 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-~p~t~ie~~~~~l~-~vD~IlvmsV~pG~--~GQ~ 204 (281)
+.++.+.++|+|.|.+-.-......+.+.++.+|+.--.+-+.. +-. ..+..+.+++ .+|.|.+ +.-||. +++.
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~-T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~ 233 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIV-TKEAALDLISVGADCLKV-GIGPGSICTTRI 233 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecC-CHHHHHHHHHcCCCEEEE-CCCCCcCCccee
Confidence 56888999999999975443223456678888887421222322 323 4455555555 5999875 556653 1221
Q ss_pred ---cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 205 ---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 205 ---f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
+-.-.+.-+..+++...+ .+.+|.+||||+ ++.+.+.+.+|||.+++||.|.+. +.|.
T Consensus 234 ~~g~g~p~ltai~~v~~~~~~--~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg 296 (404)
T PRK06843 234 VAGVGVPQITAICDVYEVCKN--TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPS 296 (404)
T ss_pred ecCCCCChHHHHHHHHHHHhh--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCC
Confidence 111234445455555433 347899999997 889999999999999999999874 4443
No 145
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.00 E-value=5.2e-05 Score=70.18 Aligned_cols=89 Identities=11% Similarity=0.193 Sum_probs=64.4
Q ss_pred HHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+.+.++.+|+. ++++|+..+ ..+++.+.. ..+|||++ + .+-+ +.++++++..+ ..+++
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~---tleea~~A~~~gaDyI~l---D------~~~~---e~l~~~~~~~~---~~i~i 235 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETE---TEEQVREAVAAGADIIMF---D------NRTP---DEIREFVKLVP---SAIVT 235 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeC---CHHHHHHHHHcCCCEEEE---C------CCCH---HHHHHHHHhcC---CCceE
Confidence 66777788876 467888885 455555554 45999977 1 2434 44555555543 24678
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.||||++|++++.++|+|.+++|+-.+++
T Consensus 236 ~AiGGIt~~ni~~~a~~Gvd~IAvg~l~~sa 266 (277)
T PRK08072 236 EASGGITLENLPAYGGTGVDYISLGFLTHSV 266 (277)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEEChhhcCC
Confidence 9999999999999999999999999866544
No 146
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.00 E-value=0.001 Score=61.95 Aligned_cols=142 Identities=17% Similarity=0.211 Sum_probs=97.7
Q ss_pred CCCCeeEEEEecChhhHHHHH---HHc---CCCEEEEccccc----------ccccHHHHHHHHHHc-CCcEEEEECCCC
Q 023494 114 TDLPLDVHLMIVEPEQRVPDF---IKA---GADIVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPAT 176 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~~~---~~a---GAd~Itvh~Ea~----------~~~~i~~~l~~ik~~-G~k~Glai~p~t 176 (281)
.+.|+.+.++-. ++.|++.+ .+. |+|++-+-.-+. ..+.+.++++.+++. .+-+.+=|.|.+
T Consensus 90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~ 168 (294)
T cd04741 90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT 168 (294)
T ss_pred cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 467899999888 88776543 343 699998854321 123466778888875 677788899988
Q ss_pred CHHHHHHhhc-------cCCEEEE-------EeecC--------------CCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 177 SLSAIECVLD-------VVDLVLI-------MSVNP--------------GFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 177 ~ie~~~~~l~-------~vD~Ilv-------msV~p--------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
+.+.+.++++ .+|.|.. |.+++ |.+|....|..++.++++++..+ .+++
T Consensus 169 ~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~---~~ip 245 (294)
T cd04741 169 DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLP---SEIQ 245 (294)
T ss_pred CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcC---CCCC
Confidence 7655555443 3455542 11221 12333346677777888777653 2478
Q ss_pred EEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 229 IEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 229 I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
|..-|||. .+.+.+++.+|||.+=+||+++.
T Consensus 246 Iig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 246 IIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 98999998 88999999999999999999885
No 147
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.99 E-value=0.00014 Score=65.21 Aligned_cols=166 Identities=20% Similarity=0.228 Sum_probs=93.2
Q ss_pred HHHHHHcCCCeEEEEeeeCccccccc-CCHHHHHHcCcCCC-CCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc-cc
Q 023494 76 VKAVELAGCDWIHVDVMDGRFVPNIT-IGPLVVDALRPVTD-LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS-TI 152 (281)
Q Consensus 76 l~~l~~~G~d~iHiDImDG~fvpn~~-~G~~~I~~ir~~t~-~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~-~~ 152 (281)
.+.+.+.|.|.|-|. |. .+.+ --.++++.+++.++ .|+. |-..++... --|||.+.|+.--.+ ..
T Consensus 18 ~~~~~~~gtdai~vG---GS--~~v~~~~~~~~~~ik~~~~~~Pvi--lfp~~~~~i-----~~~aDa~l~~svlns~n~ 85 (219)
T cd02812 18 AKLAEESGTDAIMVG---GS--DGVSSTLDNVVRLIKRIRRPVPVI--LFPSNPEAV-----SPGADAYLFPSVLNSGDP 85 (219)
T ss_pred HHHHHhcCCCEEEEC---Cc--cchhhhHHHHHHHHHHhcCCCCEE--EeCCCcccc-----CcCCCEEEEEeeecCCCc
Confidence 344555899988663 22 1121 11235666666654 5544 466665533 357999988853211 11
Q ss_pred cH-----HHHHHHHHH--cCCc----EEEEECCCCC------------HHHHHHhhccCCEEEEEeecCCCCCCccchhH
Q 023494 153 HL-----HRTLNQIKD--LGAK----AGVVLNPATS------------LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 153 ~i-----~~~l~~ik~--~G~k----~Glai~p~t~------------ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
+. .+.+..+++ .+.+ ..+.+||+.. .+.+..|....+++.+.-++--++|..-.++.
T Consensus 86 ~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~~~~e~ 165 (219)
T cd02812 86 YWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGPPEV 165 (219)
T ss_pred hHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCcCCHHH
Confidence 11 233444444 3333 2355665533 34444444333333322222225565533444
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++++++... +.++.+.|||+ +|.++++.++|||.+|+||++++.
T Consensus 166 ---I~~v~~~~~----~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 166 ---VRAVKKVLG----DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred ---HHHHHHhcC----CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 444454431 36899999997 999999999999999999999974
No 148
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.96 E-value=5.2e-05 Score=69.78 Aligned_cols=88 Identities=16% Similarity=0.285 Sum_probs=61.5
Q ss_pred HHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+...++.+|+. +.++|+..+ .++++.+... .+|||++- +|-|+. ++++.+.++. ..++
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~---t~eea~~A~~~gaDyI~ld---------~~~~e~---lk~~v~~~~~---~ipi 225 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVE---SLEEAEEAAEAGADIIMLD---------NMKPEE---IKEAVQLLKG---RVLL 225 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeC---CHHHHHHHHHcCCCEEEEC---------CCCHHH---HHHHHHHhcC---CCcE
Confidence 55667777774 477888885 4455555444 59999772 133433 4444444432 2689
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.||||++|++++.++|+|.+.+ |+|+.+
T Consensus 226 ~AsGGI~~~ni~~~a~~Gvd~Isv-gait~s 255 (265)
T TIGR00078 226 EASGGITLDNLEEYAETGVDVISS-GALTHS 255 (265)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEe-CHHHcC
Confidence 999999999999999999999999 566653
No 149
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.94 E-value=0.00021 Score=66.85 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=83.4
Q ss_pred HHHHcCCCEEEEccccc--------c----c------------ccHHHHHHHHHHc---CCcEEEEECCCC------CHH
Q 023494 133 DFIKAGADIVSVHCEQS--------S----T------------IHLHRTLNQIKDL---GAKAGVVLNPAT------SLS 179 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~--------~----~------------~~i~~~l~~ik~~---G~k~Glai~p~t------~ie 179 (281)
.+.++|+|.|-+|.-.. + . .-+.++++++|+. ++.+++-+++.. +.+
T Consensus 149 ~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~ 228 (327)
T cd02803 149 RAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLE 228 (327)
T ss_pred HHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHH
Confidence 45678999999997420 0 0 0145788888875 567888888753 233
Q ss_pred HHHHhh----c-cCCEEEEEeecCCCCCCccc---------hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH
Q 023494 180 AIECVL----D-VVDLVLIMSVNPGFGGQSFI---------ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI 244 (281)
Q Consensus 180 ~~~~~l----~-~vD~IlvmsV~pG~~GQ~f~---------~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~ 244 (281)
...+++ + .+|+|-+. .|...+... +..++.++++++.. +++|.+.|||+ ++.+.+++
T Consensus 229 e~~~la~~l~~~G~d~i~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-----~iPVi~~Ggi~t~~~a~~~l 300 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVS---GGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-----KIPVIAVGGIRDPEVAEEIL 300 (327)
T ss_pred HHHHHHHHHHHcCCCEEEeC---CCCCcccccccCCCCCCcchhHHHHHHHHHHC-----CCCEEEeCCCCCHHHHHHHH
Confidence 333322 2 27888653 333222211 23345566666654 47899999998 99999999
Q ss_pred Hc-CCcEEEEcccccCCCCHHHHH
Q 023494 245 EA-GANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 245 ~a-GAD~~VvGSaIf~a~dp~~~~ 267 (281)
+. |+|.+.+||+++..+|+...+
T Consensus 301 ~~g~aD~V~igR~~ladP~l~~k~ 324 (327)
T cd02803 301 AEGKADLVALGRALLADPDLPNKA 324 (327)
T ss_pred HCCCCCeeeecHHHHhCccHHHHH
Confidence 98 799999999999877655433
No 150
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.92 E-value=0.00024 Score=68.62 Aligned_cols=188 Identities=15% Similarity=0.172 Sum_probs=114.3
Q ss_pred ceEeEEEec-cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc----------cCCHHHH----HHcCcCCCCCeeEEE
Q 023494 58 IIVSPSILS-ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI----------TIGPLVV----DALRPVTDLPLDVHL 122 (281)
Q Consensus 58 ~~i~pSila-~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~----------~~G~~~I----~~ir~~t~~~idaHL 122 (281)
.-+..||+. .+..++.+.++.+++.|+|.+++.+- .||. .--++.+ +.+|+.+++|+.+-|
T Consensus 114 ~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiS----CPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKL 189 (385)
T PLN02495 114 RILIASIMEEYNKDAWEEIIERVEETGVDALEINFS----CPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKM 189 (385)
T ss_pred CcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECC----CCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEe
Confidence 568889977 57778888888999999999999642 2332 2234555 444666667877744
Q ss_pred Ee--cChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC
Q 023494 123 MI--VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 200 (281)
Q Consensus 123 mv--~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~ 200 (281)
=- .|+....+.+.++|||.|++--- + . -..++.+...++.. .+.. .+..-|.
T Consensus 190 sPn~t~i~~ia~aa~~~Gadgi~liNT------~---~-------~~~~ID~~t~~p~~----~~~~------~~~~GGl 243 (385)
T PLN02495 190 TPNITDITQPARVALKSGCEGVAAINT------I---M-------SVMGINLDTLRPEP----CVEG------YSTPGGY 243 (385)
T ss_pred CCChhhHHHHHHHHHHhCCCEEEEecc------c---C-------cccccccccCcccc----ccCC------CCCCCCc
Confidence 21 12233444455667776664321 0 0 00111111111110 0000 0122346
Q ss_pred CCCccchhHHHHHHHHHHHhhhc-CCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-C-CHHHHHHHHHHhcC
Q 023494 201 GGQSFIESQVKKISDLRRMCLEK-GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-K-DYAEAIKGIKTSKR 275 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~-~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~-dp~~~~~~l~~~~~ 275 (281)
.|....|-.+..+.++++.+... ..+++|.--|||. .+.+-+++.+||+.+=++|+++.. . -+.+..+.|.+.++
T Consensus 244 SG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~ 322 (385)
T PLN02495 244 SSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQDFMK 322 (385)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHHHHHH
Confidence 67778899998888888877421 2247898999998 889999999999999999998854 2 23444455555443
No 151
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.91 E-value=0.00053 Score=68.40 Aligned_cols=183 Identities=20% Similarity=0.268 Sum_probs=108.0
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeee--CcccccccCCHHHHHHcCcCCC------CCeeEEEEec-Chh--hHHHHHHHcC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRPVTD------LPLDVHLMIV-EPE--QRVPDFIKAG 138 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImD--G~fvpn~~~G~~~I~~ir~~t~------~~idaHLmv~-dp~--~~i~~~~~aG 138 (281)
..+.+.++.+.+.+..++=+ .| +.++-.++.. ++++. +.+++ ..+.|=.-+. .|. ..++.+.++|
T Consensus 178 ~sl~eAl~lm~e~~i~~LPV--Vd~~g~liGIIT~~-DIl~~-~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag 253 (495)
T PTZ00314 178 ISLEEANEVLRESRKGKLPI--VNDNGELVALVSRS-DLKKN-RGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAG 253 (495)
T ss_pred CCHHHHHHHHHHcCCCeEEE--EcCCCcEEEEEEeh-Hhhhc-ccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHCC
Confidence 47788999999888887543 44 3322222221 22222 22221 2233333443 343 4567789999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC--CCc---c-chhHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS---F-IESQVK 211 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~--GQ~---f-~~~~l~ 211 (281)
+|.|.+-..........+.++++|+.--.+-+....-...+..+.+++ .+|.|-+ ++-||.. .+. + .| .+.
T Consensus 254 ~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~v-g~g~Gs~~~t~~~~~~g~p-~~~ 331 (495)
T PTZ00314 254 VDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRI-GMGSGSICITQEVCAVGRP-QAS 331 (495)
T ss_pred CCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEE-CCcCCcccccchhccCCCC-hHH
Confidence 999997653211223456888888762223333322234455666665 4998876 6667631 111 1 12 234
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
-|.++++...+. ++++..||||. +..+.+.+.+|||.+.+||.+.+.
T Consensus 332 ai~~~~~~~~~~--~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~ 379 (495)
T PTZ00314 332 AVYHVARYARER--GVPCIADGGIKNSGDICKALALGADCVMLGSLLAGT 379 (495)
T ss_pred HHHHHHHHHhhc--CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccc
Confidence 455555555433 47899999998 889999999999999999998763
No 152
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.89 E-value=0.00038 Score=69.60 Aligned_cols=184 Identities=21% Similarity=0.263 Sum_probs=106.5
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeee--CcccccccCCHHHHHHcCcCCCC--C---eeEEEEe-----c--ChhhHHHHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRPVTDL--P---LDVHLMI-----V--EPEQRVPDFI 135 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImD--G~fvpn~~~G~~~I~~ir~~t~~--~---idaHLmv-----~--dp~~~i~~~~ 135 (281)
..+++.++.+.+.+..++= |+| |.++=.++. -++++.+ .+++. + =.=+|+| . +..+.++.+.
T Consensus 182 ~sL~eAl~~m~~~~~~~LP--VVD~~g~LvGvITr-~DIlk~~-~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~ 257 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLP--LVNEDGELVDLVTR-TDVKRVK-GYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLV 257 (505)
T ss_pred CCHHHHHHHHHHcCCCEEE--EEcCCCeEEEEEEH-HHHHHHh-hCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHH
Confidence 4788899999988888753 344 322211111 2233332 22211 0 1123443 1 2234678899
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE-CCCCCHHHHHHhhc-cCCEEEEEeecCCCC--CCc-----c-
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS-----F- 205 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~--GQ~-----f- 205 (281)
++|+|.|.+-.-........+.++++|+.--.+-+.. |-.| .+..+..++ .+|.|.+ +.+||.. .+. .
T Consensus 258 ~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t-~e~a~~a~~aGaD~i~v-g~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 258 KAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVT-MYQAQNLIQAGVDGLRV-GMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred HcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCC-HHHHHHHHHcCcCEEEE-CCCCCccccCccccccCCC
Confidence 9999999986543211223378899987522222222 3333 444555554 5998866 5566621 110 0
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
....+..+.++.+. .+++|..||||. .+.+.+++.+|||.+.+||+|... +.|.
T Consensus 336 ~~~~i~~~~~~~~~-----~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~ 391 (505)
T PLN02274 336 QATAVYKVASIAAQ-----HGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPG 391 (505)
T ss_pred cccHHHHHHHHHHh-----cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCc
Confidence 11234444444432 247899999999 889999999999999999999864 4443
No 153
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=97.89 E-value=0.0003 Score=66.49 Aligned_cols=145 Identities=18% Similarity=0.268 Sum_probs=89.9
Q ss_pred HHHHHcCcCCCCCeeEEEEecChh--hH------------HHHHHHcC--------------CCEEEEcccccccccHHH
Q 023494 105 LVVDALRPVTDLPLDVHLMIVEPE--QR------------VPDFIKAG--------------ADIVSVHCEQSSTIHLHR 156 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv~dp~--~~------------i~~~~~aG--------------Ad~Itvh~Ea~~~~~i~~ 156 (281)
+.|+++|+.++.|+-+.+++..+. .. .+.+.+.| ++.|+++.-.. ..+
T Consensus 52 ~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p----~~~ 127 (330)
T PF03060_consen 52 EEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLP----PPE 127 (330)
T ss_dssp HHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-----HH
T ss_pred HHHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccc----hHH
Confidence 345566777778899988885442 11 23334444 45999987631 367
Q ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC-CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC
Q 023494 157 TLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (281)
Q Consensus 157 ~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG 234 (281)
.++.+++.|+++.... +.++..+...+ .+|.|.+-+.+.|- .|... ..++.-+.++++..+ +++.+.||
T Consensus 128 ~i~~l~~~gi~v~~~v---~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~-~~~~~L~~~v~~~~~-----iPViaAGG 198 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQV---TSVREARKAAKAGADAIVAQGPEAGGHRGFEV-GSTFSLLPQVRDAVD-----IPVIAAGG 198 (330)
T ss_dssp HHHHHHHTT-EEEEEE---SSHHHHHHHHHTT-SEEEEE-TTSSEE---SS-G-HHHHHHHHHHH-S-----S-EEEESS
T ss_pred HHHHHHHcCCcccccc---CCHHHHHHhhhcCCCEEEEeccccCCCCCccc-cceeeHHHHHhhhcC-----CcEEEecC
Confidence 8999999999888766 36666666655 49999887666542 23111 235666777777653 78999999
Q ss_pred CC-hhcHHHHHHcCCcEEEEccccc-CCCC
Q 023494 235 VG-PKNAYKVIEAGANALVAGSAVF-GAKD 262 (281)
Q Consensus 235 I~-~e~i~~~~~aGAD~~VvGSaIf-~a~d 262 (281)
|. .+.+..+...|||.+.+|+.+. ..|.
T Consensus 199 I~dg~~iaaal~lGA~gV~~GTrFl~t~Es 228 (330)
T PF03060_consen 199 IADGRGIAAALALGADGVQMGTRFLATEES 228 (330)
T ss_dssp --SHHHHHHHHHCT-SEEEESHHHHTSTTS
T ss_pred cCCHHHHHHHHHcCCCEeecCCeEEecccc
Confidence 97 6688999999999999998754 4343
No 154
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.87 E-value=0.00076 Score=66.46 Aligned_cols=188 Identities=19% Similarity=0.268 Sum_probs=111.2
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC------CCCeeEEEEec-Ch--hhHHHHHHHcCCC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT------DLPLDVHLMIV-EP--EQRVPDFIKAGAD 140 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t------~~~idaHLmv~-dp--~~~i~~~~~aGAd 140 (281)
..+.+.++.+.+.+..++=|-=-+|.++-.++. .++++.+. ++ +..+.|.--+. ++ .+.++.+.++|+|
T Consensus 161 ~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~-~DIl~~~~-~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~aG~d 238 (450)
T TIGR01302 161 IDLEEALKVLHEHRIEKLPVVDKNGELVGLITM-KDIVKRRK-FPHASKDENGRLIVGAAVGTREFDKERAEALVKAGVD 238 (450)
T ss_pred CcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEh-HHhhhccc-CCcceEeCCCCEEEEEEecCchhHHHHHHHHHHhCCC
Confidence 478888999988888765332122443322222 12232221 11 12233332332 22 2456778999999
Q ss_pred EEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC--CCc---cchhHHHH
Q 023494 141 IVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS---FIESQVKK 212 (281)
Q Consensus 141 ~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~--GQ~---f~~~~l~k 212 (281)
.|.+-..........+.++++|+. .+.++. ..-...+..+.+++ .+|.|-+ ++.||.. .+. +-.-.+.-
T Consensus 239 ~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~--G~v~t~~~a~~l~~aGad~i~v-g~g~G~~~~t~~~~~~g~p~~~~ 315 (450)
T TIGR01302 239 VIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA--GNVATAEQAKALIDAGADGLRV-GIGPGSICTTRIVAGVGVPQITA 315 (450)
T ss_pred EEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE--EeCCCHHHHHHHHHhCCCEEEE-CCCCCcCCccceecCCCccHHHH
Confidence 998865322234577788888876 333333 22234555666655 5999876 6677721 111 11123344
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
+.++++...+ .+.+|..||||. ...+.+++++|||.+.+||.+.+. +.|.
T Consensus 316 i~~~~~~~~~--~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg 367 (450)
T TIGR01302 316 VYDVAEYAAQ--SGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPG 367 (450)
T ss_pred HHHHHHHHhh--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCC
Confidence 5555555433 357899999999 889999999999999999999864 3443
No 155
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.86 E-value=0.0015 Score=65.03 Aligned_cols=188 Identities=19% Similarity=0.218 Sum_probs=111.1
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCC-------CCeeEEEEecCh--hhHHHHHHHcCCC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD-------LPLDVHLMIVEP--EQRVPDFIKAGAD 140 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~-------~~idaHLmv~dp--~~~i~~~~~aGAd 140 (281)
..+.+.++.+.+.+++.+=|.-.+|.++-.++. .++++.+. .++ .......|..+| .+.++.+.++|+|
T Consensus 165 ~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~-~DLl~~~~-~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvd 242 (486)
T PRK05567 165 TTLEEALELLHEHRIEKLPVVDDNGRLKGLITV-KDIEKAEE-FPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVD 242 (486)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEh-HHhhhhhh-CCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCC
Confidence 467888899998888876543334554433321 23333321 111 112233444445 3457788999999
Q ss_pred EEEEcccccccccHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC--CCCc---cchhHHHH
Q 023494 141 IVSVHCEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQS---FIESQVKK 212 (281)
Q Consensus 141 ~Itvh~Ea~~~~~i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~--~GQ~---f~~~~l~k 212 (281)
.+.+=..........+.++.+++.. ..+.+ ..-...+....+.+ .+|.|-+ +.-||. +++. +-.-.++-
T Consensus 243 vivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~--g~v~t~e~a~~l~~aGad~i~v-g~g~gs~~~~r~~~~~g~p~~~~ 319 (486)
T PRK05567 243 VLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA--GNVATAEAARALIEAGADAVKV-GIGPGSICTTRIVAGVGVPQITA 319 (486)
T ss_pred EEEEECCCCcchhHHHHHHHHHhhCCCCCEEE--eccCCHHHHHHHHHcCCCEEEE-CCCCCccccceeecCCCcCHHHH
Confidence 8876321111234667788888754 33333 22334555666655 4899875 222331 1221 22224455
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
+.++++...+ .+++|..||||. +..+.+++.+|||.+.+||+|.+. +.|.
T Consensus 320 ~~~~~~~~~~--~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg 371 (486)
T PRK05567 320 IADAAEAAKK--YGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPG 371 (486)
T ss_pred HHHHHHHhcc--CCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccccCCC
Confidence 5555554432 357899999999 789999999999999999999875 3443
No 156
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.83 E-value=0.00089 Score=59.39 Aligned_cols=171 Identities=17% Similarity=0.149 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcC-CC-CCeeEEEEecC-hhhHHHHHHHcCCCEEEEc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPV-TD-LPLDVHLMIVE-PEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~-t~-~~idaHLmv~d-p~~~i~~~~~aGAd~Itvh 145 (281)
+. +.++.+.+.|+|++=+ .|.|.- ...++..++|.+. ++ ... |=+.+++ |....+.+.+.|.|.|-+|
T Consensus 10 ~~-eda~~~~~~GaD~iGf-----If~~~SpR~V~~~~a~~i~~~~~~~~~~-VgVf~~~~~~~i~~~~~~~~~d~vQLH 82 (207)
T PRK13958 10 TI-KDVTAASQLPIDAIGF-----IHYEKSKRHQTITQIKKLASAVPNHIDK-VCVVVNPDLTTIEHILSNTSINTIQLH 82 (207)
T ss_pred cH-HHHHHHHHcCCCEEEE-----ecCCCCcccCCHHHHHHHHHhCCCCCCE-EEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 44 4466777899998744 233432 3467777777653 22 222 3345554 4455566678999999999
Q ss_pred ccccccccHHHHHHHHHHc--CCcEEEEECCCC-CHHHHHHhhccCCEEEEEeecC--CCCCCccchhHHHHHHHHHHHh
Q 023494 146 CEQSSTIHLHRTLNQIKDL--GAKAGVVLNPAT-SLSAIECVLDVVDLVLIMSVNP--GFGGQSFIESQVKKISDLRRMC 220 (281)
Q Consensus 146 ~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t-~ie~~~~~l~~vD~IlvmsV~p--G~~GQ~f~~~~l~kI~~lr~l~ 220 (281)
.+.. .+.++.+++. ++++.-++.... .++.+.++...+|++++=+..+ |-.|+.|.-+.+. ++ .
T Consensus 83 G~e~-----~~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~~dw~~~~---~~---~ 151 (207)
T PRK13958 83 GTES-----IDFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTPSVSYGGTGQTYDWTILK---HI---K 151 (207)
T ss_pred CCCC-----HHHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCCCCCCCcCCcEeChHHhh---hc---c
Confidence 8731 3456666654 367666666532 2233444545589988865322 3346777544332 21 1
Q ss_pred hhcCCCCeEEEecCCChhcHHHHHH--cCCcEEEEccccc--CCCCHH
Q 023494 221 LEKGVNPWIEVDGGVGPKNAYKVIE--AGANALVAGSAVF--GAKDYA 264 (281)
Q Consensus 221 ~~~~~~~~I~VDGGI~~e~i~~~~~--aGAD~~VvGSaIf--~a~dp~ 264 (281)
..++.+.||+|++|+.++.+ .+...+=+-|.+= +-.|++
T Consensus 152 -----~~p~iLAGGL~peNV~~a~~~~~~p~gVDvsSGVE~~G~KD~~ 194 (207)
T PRK13958 152 -----DIPYLIAGGINSENIQTVEQLKLSHQGYDIASGIETNGRKDIN 194 (207)
T ss_pred -----CCCEEEECCCCHHHHHHHHhcCCCCCEEEcccccCCCCCCCHH
Confidence 13577999999999999764 3556555555553 234654
No 157
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=97.82 E-value=0.00033 Score=66.41 Aligned_cols=156 Identities=21% Similarity=0.257 Sum_probs=100.9
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc-------------cccCCHHHHHHcCcCCCCCeeEEEE
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP-------------NITIGPLVVDALRPVTDLPLDVHLM 123 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp-------------n~~~G~~~I~~ir~~t~~~idaHLm 123 (281)
+--+...|...|+..+.++.+.+.+.|+|.|.+- =|.-.+ +..+-.++++++|+..+.|+.+-+-
T Consensus 64 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN--~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR 141 (333)
T PRK11815 64 EHPVALQLGGSDPADLAEAAKLAEDWGYDEINLN--VGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHR 141 (333)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEc--CCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEE
Confidence 4468899999999999999999999999986543 232112 2233346778888777788888664
Q ss_pred e--cC------hhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEe
Q 023494 124 I--VE------PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMS 195 (281)
Q Consensus 124 v--~d------p~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilvms 195 (281)
+ .+ ..++++.+.++|+|.+++|.-.. . .+ | .+
T Consensus 142 ~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~---~----~~-----g------~~---------------------- 181 (333)
T PRK11815 142 IGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKA---W----LK-----G------LS---------------------- 181 (333)
T ss_pred eeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCch---h----hc-----C------CC----------------------
Confidence 4 22 12355667778888888885420 0 00 0 00
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCC
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD 262 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~d 262 (281)
|..+....|..++.++++++.. .+++|..-|||+ ++.+.++++ |+|.+.+|++++..+.
T Consensus 182 ---~~~~~~~~~~~~~~i~~v~~~~----~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~ 241 (333)
T PRK11815 182 ---PKENREIPPLDYDRVYRLKRDF----PHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPY 241 (333)
T ss_pred ---ccccccCCCcCHHHHHHHHHhC----CCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCH
Confidence 0000011122344555555432 147898999997 889999886 7999999999986543
No 158
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.82 E-value=0.0031 Score=59.56 Aligned_cols=139 Identities=16% Similarity=0.206 Sum_probs=91.7
Q ss_pred CCeeEEEEecChhhHHH---HHHHcCCCEEEEcccccc---------------cccHHHHHHHHHHc-CCcEEEEECCCC
Q 023494 116 LPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQSS---------------TIHLHRTLNQIKDL-GAKAGVVLNPAT 176 (281)
Q Consensus 116 ~~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~~---------------~~~i~~~l~~ik~~-G~k~Glai~p~t 176 (281)
.++.+.|+-+||..+.+ .+.+.|+|.|-+..-+.. .+.+.++++.+++. ++.+++-+..+.
T Consensus 65 ~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~ 144 (321)
T PRK10415 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGW 144 (321)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccc
Confidence 57789999999998744 345789999999876520 12355667777653 566776663221
Q ss_pred -----CHHHHHHhhc--cCCEEEEEeecCCCCCCccc-hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHH-c
Q 023494 177 -----SLSAIECVLD--VVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE-A 246 (281)
Q Consensus 177 -----~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~-a 246 (281)
....+.+.+. .+|.|.+.+. ...|.+. +..++.++++++.. +++|..-|||. ++.+.++++ .
T Consensus 145 ~~~~~~~~~~a~~le~~G~d~i~vh~r---t~~~~~~G~a~~~~i~~ik~~~-----~iPVI~nGgI~s~~da~~~l~~~ 216 (321)
T PRK10415 145 APEHRNCVEIAQLAEDCGIQALTIHGR---TRACLFNGEAEYDSIRAVKQKV-----SIPVIANGDITDPLKARAVLDYT 216 (321)
T ss_pred cCCcchHHHHHHHHHHhCCCEEEEecC---ccccccCCCcChHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHhcc
Confidence 2222333333 3788876533 3223332 23356666666543 47899999995 999999987 6
Q ss_pred CCcEEEEcccccCCCC
Q 023494 247 GANALVAGSAVFGAKD 262 (281)
Q Consensus 247 GAD~~VvGSaIf~a~d 262 (281)
|+|.+.+|++++..+.
T Consensus 217 gadgVmiGR~~l~nP~ 232 (321)
T PRK10415 217 GADALMIGRAAQGRPW 232 (321)
T ss_pred CCCEEEEChHhhcCCh
Confidence 9999999999987554
No 159
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.81 E-value=0.0032 Score=57.45 Aligned_cols=188 Identities=17% Similarity=0.200 Sum_probs=111.2
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--------hHHHHHHHcC-
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--------QRVPDFIKAG- 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--------~~i~~~~~aG- 138 (281)
-+.+.+...+.++..|++.+-+=+---.+ ....-...+.+.|+. ..++++-+..+ +..++..+++
T Consensus 25 ky~s~~~~~~ai~aSg~evvTvalRR~~~-~~~~~~~~~l~~i~~-----~~~~~LPNTaGc~tA~EAv~~A~laRe~~~ 98 (267)
T CHL00162 25 KYKSLKDAIQSIEASGCEIVTVAIRRLNN-NLLNDNSNLLNGLDW-----NKLWLLPNTAGCQTAEEAIRMAFLGRELAK 98 (267)
T ss_pred CCCCHHHHHHHHHHhCCcEEEEEEEEecc-CcCCCcchHHHhhch-----hccEECCcCcCCCCHHHHHHHHHHHHHHhc
Confidence 34466666677778889887664432211 000112445555542 12345544432 2334445654
Q ss_pred ------CCEEEEccccc---ccccHHHHHHHHHH---cCCcEEEEECCCCCHHHHHHhhccCCEEEEE--eecCCCCCCc
Q 023494 139 ------ADIVSVHCEQS---STIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLDVVDLVLIM--SVNPGFGGQS 204 (281)
Q Consensus 139 ------Ad~Itvh~Ea~---~~~~i~~~l~~ik~---~G~k~Glai~p~t~ie~~~~~l~~vD~Ilvm--sV~pG~~GQ~ 204 (281)
-|||-+-.-.. -.+++.+++++.+. .|..+---++++ ++ +..-+..+---.|| ....|. ||-
T Consensus 99 ~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D-~v--~a~rLed~Gc~aVMPlgsPIGS-g~G 174 (267)
T CHL00162 99 QLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINAD-PM--LAKHLEDIGCATVMPLGSPIGS-GQG 174 (267)
T ss_pred cccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCC-HH--HHHHHHHcCCeEEeeccCcccC-CCC
Confidence 67876543210 13456677777664 455554444432 22 33334443333444 344453 444
Q ss_pred c-chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 205 F-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 205 f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
. .|..++-| ++ +.++++.||+||+ ++++....+.|+|.+-+.|+|++++||.+.++.++..
T Consensus 175 l~n~~~l~~i---~e-----~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~A 237 (267)
T CHL00162 175 LQNLLNLQII---IE-----NAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLA 237 (267)
T ss_pred CCCHHHHHHH---HH-----cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHH
Confidence 4 45555443 32 2357899999999 8899999999999999999999999999988888864
No 160
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.79 E-value=0.0009 Score=57.11 Aligned_cols=165 Identities=19% Similarity=0.263 Sum_probs=103.5
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-C--CCCeeEEEEecC----hh---hHHHHHHHc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-T--DLPLDVHLMIVE----PE---QRVPDFIKA 137 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t--~~~idaHLmv~d----p~---~~i~~~~~a 137 (281)
|...+++.++.+.+.|++.+-+- ..+++.+++. . +.++.++.-..+ .. +..+.+.++
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~-------------g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~ 77 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVN-------------PGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDL 77 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEC-------------HHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc
Confidence 67788899999999998876441 2667766554 3 367777665554 22 456778899
Q ss_pred CCCEEEEccccc---c--cccHHHHHHHHHHc---CCcEEEEECCCC--CHHHHHHh---h--ccCCEEEEEeecCCCCC
Q 023494 138 GADIVSVHCEQS---S--TIHLHRTLNQIKDL---GAKAGVVLNPAT--SLSAIECV---L--DVVDLVLIMSVNPGFGG 202 (281)
Q Consensus 138 GAd~Itvh~Ea~---~--~~~i~~~l~~ik~~---G~k~Glai~p~t--~ie~~~~~---l--~~vD~IlvmsV~pG~~G 202 (281)
|||.+.++.-.. + .+.+.+.++.+.+. ++.+.+-..|.. +.+.+.++ + ..+|.|= ..+|...
T Consensus 78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK---~~~~~~~ 154 (201)
T cd00945 78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIK---TSTGFGG 154 (201)
T ss_pred CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEE---eCCCCCC
Confidence 999999863210 0 13344555556554 777777776653 34444443 1 2356553 2333221
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
..+ .++.++++++..+ .++++.+-||++ ++.+..+..+|++.+++|
T Consensus 155 ~~~---~~~~~~~i~~~~~---~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 155 GGA---TVEDVKLMKEAVG---GRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCC---CHHHHHHHHHhcc---cCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 111 2345555555432 136788999999 888899999999999876
No 161
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.78 E-value=0.00079 Score=63.68 Aligned_cols=129 Identities=20% Similarity=0.321 Sum_probs=84.4
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC--CCc-
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS- 204 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~--GQ~- 204 (281)
.+++.+.++|++.|.+.......+...+.++++|+.+-++-+....-...+..+.+.+ .+|+|.+ ++-||.. ++.
T Consensus 97 ~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~v-g~g~G~~~~t~~~ 175 (325)
T cd00381 97 ERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKV-GIGPGSICTTRIV 175 (325)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEE-CCCCCcCccccee
Confidence 4677889999999887543222345677899999876223333333345666666666 4999876 3344431 111
Q ss_pred --cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 205 --FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 205 --f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+-.-.+.-|.++.+...+ .+++|..||||. ...+.+.+.+|||.+.+||.+...
T Consensus 176 ~g~g~p~~~~i~~v~~~~~~--~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t 232 (325)
T cd00381 176 TGVGVPQATAVADVAAAARD--YGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGT 232 (325)
T ss_pred CCCCCCHHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccc
Confidence 111234445555555443 247888999998 689999999999999999998754
No 162
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=97.76 E-value=0.0013 Score=60.77 Aligned_cols=171 Identities=18% Similarity=0.154 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeC-cccc--c-ccC-CHHHHHHcCcC-CCCCeeEEEEecC-----------hhhHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDG-RFVP--N-ITI-GPLVVDALRPV-TDLPLDVHLMIVE-----------PEQRVPD 133 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG-~fvp--n-~~~-G~~~I~~ir~~-t~~~idaHLmv~d-----------p~~~i~~ 133 (281)
...+..+.|.+.|+++|++-. + +|.- . .+. ..+.++.+++. ++.++-++....+ -...++.
T Consensus 22 ~~~~ia~~L~~~Gv~~iE~G~--~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~ 99 (275)
T cd07937 22 DMLPIAEALDEAGFFSLEVWG--GATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEK 99 (275)
T ss_pred HHHHHHHHHHHcCCCEEEccC--CcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHH
Confidence 334456778889998887731 1 0110 0 122 23556777664 5556666554322 1235778
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC----CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCc
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN----PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~----p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~ 204 (281)
..++|++.|.+-......+.+.+.++.+|+.|.++...+. +.++.+.+.++... +|.|.+- -..|..
T Consensus 100 ~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~----DT~G~~ 175 (275)
T cd07937 100 AAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK----DMAGLL 175 (275)
T ss_pred HHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc----CCCCCC
Confidence 8899999977764432345678899999999998776543 44566666555432 7777652 334544
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
...++.+.++.+++.++ .+|++ |-|....|.-..+++||+.+=
T Consensus 176 ~P~~v~~lv~~l~~~~~-----~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd 222 (275)
T cd07937 176 TPYAAYELVKALKKEVG-----LPIHLHTHDTSGLAVATYLAAAEAGVDIVD 222 (275)
T ss_pred CHHHHHHHHHHHHHhCC-----CeEEEEecCCCChHHHHHHHHHHhCCCEEE
Confidence 44555666777766542 56777 889999999999999999764
No 163
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.75 E-value=0.001 Score=59.72 Aligned_cols=137 Identities=20% Similarity=0.279 Sum_probs=81.5
Q ss_pred eEEEEecChhh------HHHHHHHcCCCEEEEccccc-ccccHHHHHHHHH-HcCCcEEEEECCCCCHHHHHHhhccCCE
Q 023494 119 DVHLMIVEPEQ------RVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIK-DLGAKAGVVLNPATSLSAIECVLDVVDL 190 (281)
Q Consensus 119 daHLmv~dp~~------~i~~~~~aGAd~Itvh~Ea~-~~~~i~~~l~~ik-~~G~k~Glai~p~t~ie~~~~~l~~vD~ 190 (281)
-.|+---||.+ ..+.+.++|.|.|.+..-.. ..+...+++++|| +.++.+.+.-+-.+ -+.+.+|.
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~------~is~~aDa 89 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPS------GISPYADA 89 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChh------ccCccCCe
Confidence 34555555543 56678899999999997652 1245788999999 66666655433211 22334556
Q ss_pred EEEEee-----------------------------------cCCCC-----CCccchhHHHHHHHHHHHhhh--------
Q 023494 191 VLIMSV-----------------------------------NPGFG-----GQSFIESQVKKISDLRRMCLE-------- 222 (281)
Q Consensus 191 IlvmsV-----------------------------------~pG~~-----GQ~f~~~~l~kI~~lr~l~~~-------- 222 (281)
+++|++ +||-+ +-+-+|..-+++.-...+..+
T Consensus 90 vff~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~Y 169 (240)
T COG1646 90 VFFPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVY 169 (240)
T ss_pred EEEEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEE
Confidence 665554 33321 111122222222211111110
Q ss_pred ------------------cCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC
Q 023494 223 ------------------KGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 223 ------------------~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
.-...++-|.|||+ .|+++++.++|||++|+|..+.++.
T Consensus 170 lEagsga~~Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 170 LEAGSGAGDPVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred EEecCCCCCCcCHHHHHHhhccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 00113677999999 8999999999999999999998643
No 164
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.74 E-value=0.0012 Score=66.11 Aligned_cols=187 Identities=18% Similarity=0.216 Sum_probs=104.7
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeee--CcccccccCCHHHHHHcCc---CCC--------CCeeEEEEecChhhHHHHHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRP---VTD--------LPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImD--G~fvpn~~~G~~~I~~ir~---~t~--------~~idaHLmv~dp~~~i~~~~~ 136 (281)
..+.++++.+.+.++..+ =|.| |..+ |.-..+.|.+ ++. ..+-+-+=+.+....++.+.+
T Consensus 180 ~~l~eAl~lM~e~~i~~L--PVVD~~g~Lv-----GIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~~~~~ra~~Lv~ 252 (502)
T PRK07107 180 TTLKEANDIIWDHKLNTL--PIVDKNGNLV-----YLVFRKDYDSHKENPLELLDSSKRYVVGAGINTRDYAERVPALVE 252 (502)
T ss_pred CcHHHHHHHHHHcCCCEE--EEEcCCCeEE-----EEEEhHHHHhcccChhhhhhhccCeeeeeccChhhHHHHHHHHHH
Confidence 478899999999888875 3455 3221 2222222221 221 111122211222245667899
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC----CCCc-cchhH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF----GGQS-FIESQ 209 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~----~GQ~-f~~~~ 209 (281)
+|+|.+.+-..........+.++++|+. +..+-|.-..=...+..+.+++ .+|.|.+ ++.||- ..|. .-.-.
T Consensus 253 aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~v-g~g~Gs~c~tr~~~~~g~~~ 331 (502)
T PRK07107 253 AGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKV-GIGGGSICITREQKGIGRGQ 331 (502)
T ss_pred hCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEE-CCCCCcCcccccccCCCccH
Confidence 9999997742111112245778888874 4222222211123445566655 5999877 888881 1111 21112
Q ss_pred HHHHHHHHH----HhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 210 VKKISDLRR----MCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 210 l~kI~~lr~----l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
+.-|.+..+ +.++.|.+++|..||||+ ..++-+.+.+|||.+-+||.+-+. +.|.
T Consensus 332 ~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg 392 (502)
T PRK07107 332 ATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPT 392 (502)
T ss_pred HHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCC
Confidence 333333332 334445557899999999 668889999999999999988753 3443
No 165
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.73 E-value=0.00058 Score=64.66 Aligned_cols=132 Identities=19% Similarity=0.235 Sum_probs=83.6
Q ss_pred CeeEEEEec-Chh--hHHHHHHHcCC--CEEEE-----cccccccccHHHHHHHHHHcCCcEEEEE-CCCCCHHHHHHhh
Q 023494 117 PLDVHLMIV-EPE--QRVPDFIKAGA--DIVSV-----HCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVL 185 (281)
Q Consensus 117 ~idaHLmv~-dp~--~~i~~~~~aGA--d~Itv-----h~Ea~~~~~i~~~l~~ik~~G~k~Glai-~p~t~ie~~~~~l 185 (281)
.+.|-+=+. +++ +.++.+.++|+ |.|.+ |.+ ...++++++|+.--.+-+.. +.. ..+....+.
T Consensus 85 ~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~-----~~~e~I~~ir~~~p~~~vi~g~V~-t~e~a~~l~ 158 (326)
T PRK05458 85 GLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSD-----SVINMIQHIKKHLPETFVIAGNVG-TPEAVRELE 158 (326)
T ss_pred ccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchH-----HHHHHHHHHHhhCCCCeEEEEecC-CHHHHHHHH
Confidence 334444443 343 34667889955 99999 655 36778888887532233333 333 455566665
Q ss_pred c-cCCEEEEEeecCCC-------CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccc
Q 023494 186 D-VVDLVLIMSVNPGF-------GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 186 ~-~vD~IlvmsV~pG~-------~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSa 256 (281)
+ .+|.|.+ +..||. .|.......+.-++++++.. +.+|..||||. ...+.+++.+|||.+.+|++
T Consensus 159 ~aGad~i~v-g~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~-----~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~ 232 (326)
T PRK05458 159 NAGADATKV-GIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-----RKPIIADGGIRTHGDIAKSIRFGATMVMIGSL 232 (326)
T ss_pred HcCcCEEEE-CCCCCcccccccccCCCCCccHHHHHHHHHHHc-----CCCEEEeCCCCCHHHHHHHHHhCCCEEEechh
Confidence 5 4899765 444551 11111111344455555432 36788999999 88999999999999999999
Q ss_pred ccCC
Q 023494 257 VFGA 260 (281)
Q Consensus 257 If~a 260 (281)
+.+.
T Consensus 233 ~~~~ 236 (326)
T PRK05458 233 FAGH 236 (326)
T ss_pred hcCC
Confidence 9853
No 166
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.71 E-value=0.00018 Score=66.47 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=57.7
Q ss_pred HHHHHHHHHc--CCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 155 HRTLNQIKDL--GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 155 ~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
.+.++.+|+. +.++|+..+ |. +++.+.. ..+|||.+-. |-|..++ ++.+.+.....++++++
T Consensus 171 ~~av~~~R~~~~~~~IgVev~--t~-eea~~A~~~gaD~I~ld~---------~~p~~l~---~~~~~~~~~~~~i~i~A 235 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD--SL-EEALAAAEAGADILQLDK---------FSPEELA---ELVPKLRSLAPPVLLAA 235 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC--CH-HHHHHHHHcCCCEEEECC---------CCHHHHH---HHHHHHhccCCCceEEE
Confidence 5567777765 256677664 33 4444333 4589998732 3333333 33333333223579999
Q ss_pred ecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 232 DGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 232 DGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
-||||++|+.++.++|+|+++ .|+|+.+
T Consensus 236 sGGI~~~ni~~~~~~Gvd~I~-vsai~~a 263 (272)
T cd01573 236 AGGINIENAAAYAAAGADILV-TSAPYYA 263 (272)
T ss_pred ECCCCHHHHHHHHHcCCcEEE-EChhhcC
Confidence 999999999999999999994 5555543
No 167
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.71 E-value=0.00021 Score=66.46 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=64.7
Q ss_pred cHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 153 HLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 153 ~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
.+.+.++.+|+. ..++-+-. + .++++.+.++ .+|.|++ + .|.|+.+ +++.++++..+.++.+
T Consensus 185 ~i~~ai~~~r~~~~~~kIeVEv--~-tl~ea~eal~~gaDiI~L-------D--nm~~e~v---k~av~~~~~~~~~v~i 249 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEVEV--D-SLEQLDEVLAEGAELVLL-------D--NFPVWQT---QEAVQRRDARAPTVLL 249 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEEEc--C-CHHHHHHHHHcCCCEEEe-------C--CCCHHHH---HHHHHHHhccCCCEEE
Confidence 356778888864 24544444 3 4555556565 4999986 2 3555554 4444444334456889
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.||||++|+.++.+.|+|++++|+-..++
T Consensus 250 eaSGGI~~~ni~~yA~tGvD~Is~galt~sa 280 (289)
T PRK07896 250 ESSGGLTLDTAAAYAETGVDYLAVGALTHSV 280 (289)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEeChhhcCC
Confidence 9999999999999999999999999877754
No 168
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.70 E-value=0.00023 Score=65.98 Aligned_cols=90 Identities=14% Similarity=0.281 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEE
Q 023494 154 LHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (281)
Q Consensus 154 i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~ 230 (281)
+...++.+|+.. .++++... | .+++.+.++ .+|||++ + +|.++. ++++.+..+ .+++++
T Consensus 176 v~~av~~~r~~~~~~~I~VEv~--t-leea~eA~~~gaD~I~L-------D--~~~~e~---l~~~v~~~~---~~i~le 237 (277)
T PRK05742 176 IAQAVAAAHRIAPGKPVEVEVE--S-LDELRQALAAGADIVML-------D--ELSLDD---MREAVRLTA---GRAKLE 237 (277)
T ss_pred HHHHHHHHHHhCCCCeEEEEeC--C-HHHHHHHHHcCCCEEEE-------C--CCCHHH---HHHHHHHhC---CCCcEE
Confidence 456677777764 66777764 3 655555554 4899965 1 244444 444444442 257899
Q ss_pred EecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 231 VDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 231 VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
+-||||++|++++.++|+|++++|+-..++.
T Consensus 238 AsGGIt~~ni~~~a~tGvD~Isvg~lt~s~~ 268 (277)
T PRK05742 238 ASGGINESTLRVIAETGVDYISIGAMTKDVK 268 (277)
T ss_pred EECCCCHHHHHHHHHcCCCEEEEChhhcCCc
Confidence 9999999999999999999999999777653
No 169
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.69 E-value=0.00026 Score=65.64 Aligned_cols=92 Identities=16% Similarity=0.314 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcC--CCCe
Q 023494 154 LHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG--VNPW 228 (281)
Q Consensus 154 i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~--~~~~ 228 (281)
+.+.++.+|+.. .++.+-.. .++.+.+.++. +|.|++ +. |.|+.+.+ +.+.+.+.+ .++.
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~---~leea~~a~~agaDiI~L-------Dn--~~~e~l~~---~v~~l~~~~~~~~~~ 233 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVE---SLEDALKAAKAGADIIML-------DN--MTPEEIRE---VIEALKREGLRERVK 233 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeC---CHHHHHHHHHcCcCEEEE-------CC--CCHHHHHH---HHHHHHhcCcCCCEE
Confidence 567888888875 45444443 56666666664 898876 22 45555544 444443322 3578
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+++.||||++|+.++.+.|+|++++|+-..++
T Consensus 234 leaSGGI~~~ni~~yA~tGvD~Is~galt~sa 265 (278)
T PRK08385 234 IEVSGGITPENIEEYAKLDVDVISLGALTHSV 265 (278)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEeChhhcCC
Confidence 99999999999999999999999999877654
No 170
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=97.67 E-value=0.0016 Score=61.82 Aligned_cols=195 Identities=23% Similarity=0.288 Sum_probs=122.7
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEe-----eeC-------------cccccccC---CHH-HHHHcCcC-CCCCe
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDV-----MDG-------------RFVPNITI---GPL-VVDALRPV-TDLPL 118 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDI-----mDG-------------~fvpn~~~---G~~-~I~~ir~~-t~~~i 118 (281)
|-++++=+..-.+.++.+.+.|...+.+-= -.| .+.+.+.| |.+ +++.+++. .+.++
T Consensus 58 Pi~lAsG~~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i 137 (335)
T TIGR01036 58 PLGLAAGFDKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARYKGPI 137 (335)
T ss_pred CcEeCCccCCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccCCCcE
Confidence 666666666666788888888888776520 011 22222233 333 35556542 34566
Q ss_pred eEEEEec-------ChhhHHHHHHHcC--CCEEEEccccc---------ccccHHHHHHHHHHc-C-------CcEEEEE
Q 023494 119 DVHLMIV-------EPEQRVPDFIKAG--ADIVSVHCEQS---------STIHLHRTLNQIKDL-G-------AKAGVVL 172 (281)
Q Consensus 119 daHLmv~-------dp~~~i~~~~~aG--Ad~Itvh~Ea~---------~~~~i~~~l~~ik~~-G-------~k~Glai 172 (281)
-+-+..+ .+++|.+.+.+++ ||++.+-.-+. ..+...++++.+++. . +-+.+=+
T Consensus 138 ~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKL 217 (335)
T TIGR01036 138 GINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKI 217 (335)
T ss_pred EEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEe
Confidence 6655443 3567887777776 99998843221 012345666666543 1 5677789
Q ss_pred CCCCCHHHHHHhhc-----cCCEEEEEee---------------cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 173 NPATSLSAIECVLD-----VVDLVLIMSV---------------NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 173 ~p~t~ie~~~~~l~-----~vD~IlvmsV---------------~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
.|+...+.+.++.+ .+|-|.+.-. .-|.+|....|..++.++++++..+ .+++|..-
T Consensus 218 sP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~---~~ipiig~ 294 (335)
T TIGR01036 218 APDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQ---GRLPIIGV 294 (335)
T ss_pred CCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhC---CCCCEEEE
Confidence 99876433444332 2676654210 1134566677888888888877653 24788889
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
|||. .+.+.+++.+|||.+-+||+++.
T Consensus 295 GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 295 GGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred CCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 9998 88899999999999999999875
No 171
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=97.65 E-value=0.00054 Score=64.26 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=65.7
Q ss_pred cHHHHHHHHHHc------CCcEEEEECCCCCHHHHHHhhc-------cCCEEEEEeecCCCCCCccchh----HHHHHHH
Q 023494 153 HLHRTLNQIKDL------GAKAGVVLNPATSLSAIECVLD-------VVDLVLIMSVNPGFGGQSFIES----QVKKISD 215 (281)
Q Consensus 153 ~i~~~l~~ik~~------G~k~Glai~p~t~ie~~~~~l~-------~vD~IlvmsV~pG~~GQ~f~~~----~l~kI~~ 215 (281)
.+.+.++.+|++ ..++-+-. . .++.+.+.++ .+|.|++ +...+.|+ ..+.+++
T Consensus 185 ~i~~av~~~r~~~~~~~~~~kIeVEv--~-tleea~ea~~~~~~~~agaDiImL-------Dnm~~~~~~~~~~~e~l~~ 254 (308)
T PLN02716 185 GITNAVQSADKYLEEKGLSMKIEVET--R-TLEEVKEVLEYLSDTKTSLTRVML-------DNMVVPLENGDVDVSMLKE 254 (308)
T ss_pred CHHHHHHHHHHhhhhcCCCeeEEEEE--C-CHHHHHHHHHhcccccCCCCEEEe-------CCCcccccccCCCHHHHHH
Confidence 366788888872 23455544 3 3666666666 3899986 33222333 5566666
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
..++++. ..++++.||||++|+.++.+.|+|++++|+-..++
T Consensus 255 av~~~~~---~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galthsa 296 (308)
T PLN02716 255 AVELING---RFETEASGNVTLDTVHKIGQTGVTYISSGALTHSV 296 (308)
T ss_pred HHHhhCC---CceEEEECCCCHHHHHHHHHcCCCEEEeCccccCC
Confidence 6666543 36799999999999999999999999999865543
No 172
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.65 E-value=0.0026 Score=58.60 Aligned_cols=171 Identities=13% Similarity=0.155 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-CCCCCeeEEEEec-----Chh-----hHHHHHHHcCC
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-VTDLPLDVHLMIV-----EPE-----QRVPDFIKAGA 139 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-~t~~~idaHLmv~-----dp~-----~~i~~~~~aGA 139 (281)
++.+.+..+.. |+|.+-+ ..-+++.... ..+.++.+||=-. +|. --++.+.+.||
T Consensus 43 ~~~~~~~~i~~-~~da~~~-------------~~G~~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGA 108 (264)
T PRK08227 43 RIDINIAPLFP-YADVLMC-------------TRGILRSVVPPATNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNA 108 (264)
T ss_pred ChHHHHHHHhh-cCCEEEe-------------ChhHHHhcccccCCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCC
Confidence 55666777776 6765422 1224444332 3557788876542 121 13788999999
Q ss_pred CEEEEcccccc------cccHHHHHHHHHHcCCcEEEEECCCCC-H----HHHHHhhc-----cCCEEEEEeecCCCCCC
Q 023494 140 DIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLNPATS-L----SAIECVLD-----VVDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 140 d~Itvh~Ea~~------~~~i~~~l~~ik~~G~k~Glai~p~t~-i----e~~~~~l~-----~vD~IlvmsV~pG~~GQ 203 (281)
|.|.+|..-.+ ..++.++.++++++|+-+-. +.|..+ + +.+..... .+|+|=+ -+|
T Consensus 109 dAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~--~y~----- 180 (264)
T PRK08227 109 CAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKT--YYV----- 180 (264)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEec--CCC-----
Confidence 99999954321 23566778889999997665 444332 1 11111111 1576632 112
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh------cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
.+.+ +++.+-. ..++.+.||=+.. .+...+++||-.+++|+.||+++||.+.++.|...+
T Consensus 181 ---~~~f---~~vv~a~-----~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IV 246 (264)
T PRK08227 181 ---EEGF---ERITAGC-----PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVV 246 (264)
T ss_pred ---HHHH---HHHHHcC-----CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHH
Confidence 1233 3333321 3688899998832 455678999999999999999999999999988754
No 173
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=97.64 E-value=0.004 Score=57.49 Aligned_cols=165 Identities=17% Similarity=0.183 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcc-----cccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRF-----VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~f-----vpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
.+.++.|.+.|++.|++ |+| +|.++--..+++.+....+..+-+ ++.+. +-++.+.++|++.+.+-.-
T Consensus 23 ~~i~~~L~~~Gv~~IEv----Gs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~--~~~~~-~dv~~A~~~g~~~i~i~~~ 95 (274)
T cd07938 23 IELIDALSAAGLRRIEV----TSFVSPKWVPQMADAEEVLAGLPRRPGVRYSA--LVPNL-RGAERALAAGVDEVAVFVS 95 (274)
T ss_pred HHHHHHHHHcCCCEEEe----CCCCCcccccccCCHHHHHhhcccCCCCEEEE--ECCCH-HHHHHHHHcCcCEEEEEEe
Confidence 35567788899999888 665 344432234555554433333333 23333 3588999999999888754
Q ss_pred ccc--------------cccHHHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHhhcc-----CCEEEEEeecCCC
Q 023494 148 QSS--------------TIHLHRTLNQIKDLGAKAGVVLN-----P---ATSLSAIECVLDV-----VDLVLIMSVNPGF 200 (281)
Q Consensus 148 a~~--------------~~~i~~~l~~ik~~G~k~Glai~-----p---~t~ie~~~~~l~~-----vD~IlvmsV~pG~ 200 (281)
... .+...+.++.+|+.|+++.+.+. | .++.+.+.++.+. +|.|.+ +-.
T Consensus 96 ~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l----~DT 171 (274)
T cd07938 96 ASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISL----GDT 171 (274)
T ss_pred cCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE----CCC
Confidence 320 12355668899999998865433 1 2355555554432 676654 233
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
.|.....++.+.++.+++..+ +.+|.+ |-|.-..|.-..+++|||.+=
T Consensus 172 ~G~~~P~~v~~lv~~l~~~~~----~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id 223 (274)
T cd07938 172 IGVATPAQVRRLLEAVLERFP----DEKLALHFHDTRGQALANILAALEAGVRRFD 223 (274)
T ss_pred CCccCHHHHHHHHHHHHHHCC----CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 454344445566777666543 256666 778888899999999999764
No 174
>PRK06256 biotin synthase; Validated
Probab=97.64 E-value=0.0056 Score=57.68 Aligned_cols=197 Identities=19% Similarity=0.149 Sum_probs=112.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccccc---CCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT---IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~---~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
++..+.++++.+.+.|+..++ +..+.+-|... .=.++++.|++.+++.+.+++-..++ +.++.+.++|++.+++
T Consensus 92 s~eeI~~~~~~~~~~g~~~~~--l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~-e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 92 DIEELIEAAKEAIEEGAGTFC--IVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGLLTE-EQAERLKEAGVDRYNH 168 (336)
T ss_pred CHHHHHHHHHHHHHCCCCEEE--EEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCcCCH-HHHHHHHHhCCCEEec
Confidence 444555666666777876554 44544445422 23355666665544444443333333 3678899999999988
Q ss_pred ccccc--------c---cccHHHHHHHHHHcCCcEE--EEECCCCCHHHHHHhhc-----cCCEEEEEeec--CCCC--C
Q 023494 145 HCEQS--------S---TIHLHRTLNQIKDLGAKAG--VVLNPATSLSAIECVLD-----VVDLVLIMSVN--PGFG--G 202 (281)
Q Consensus 145 h~Ea~--------~---~~~i~~~l~~ik~~G~k~G--lai~p~t~ie~~~~~l~-----~vD~IlvmsV~--pG~~--G 202 (281)
..|+. + .++..+.++.+++.|++++ +.+..+...+.+.+.+. .+|.|.+.... ||.. +
T Consensus 169 ~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~ 248 (336)
T PRK06256 169 NLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLEN 248 (336)
T ss_pred CCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCC
Confidence 77742 0 1124467778888998775 34444444444333332 26766654443 5642 2
Q ss_pred Ccc--chhHHHHHHHHHHHhhhcCCCCeEEEecCCC--hhcH-HHHHHcCCcEEEEcccccCCC-CHHHHHHHHHH
Q 023494 203 QSF--IESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNA-YKVIEAGANALVAGSAVFGAK-DYAEAIKGIKT 272 (281)
Q Consensus 203 Q~f--~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i-~~~~~aGAD~~VvGSaIf~a~-dp~~~~~~l~~ 272 (281)
++. ..+.++.+.-+|-+++ +..|.+.||=. .... ..+. +|||.+++|-+++... ++.+-.+-+++
T Consensus 249 ~~~~~~~e~l~~ia~~Rl~~p----~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~~lt~~g~~~~~d~~~~~~ 319 (336)
T PRK06256 249 HPELTPLECLKTIAIFRLINP----DKEIRIAGGREVNLRSLQPLGL-GGANSVIVGNYLTTVGQPATADLDMIED 319 (336)
T ss_pred CCCCCHHHHHHHHHHHHHHCC----CCeeEecCchhhhchhhHHHHh-ccCceeeECCcccCCCCChHHHHHHHHH
Confidence 222 2344555665566654 35687888863 3333 3344 7999999999998654 44444444443
No 175
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=97.62 E-value=0.012 Score=53.10 Aligned_cols=197 Identities=15% Similarity=0.143 Sum_probs=131.1
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~ 146 (281)
+.-+.-+....++++|+|-|-+ |--+.- -.-.+-+..||+....++.. -..-..++++.+.+..++.+|+-.
T Consensus 19 ~~Pd~v~aA~~a~~aGAdgITv-----HlReDrRHI~d~Dv~~l~~~~~~~lNl--E~a~~~emi~ia~~vkP~~vtLVP 91 (237)
T TIGR00559 19 NEPDPLRAALIAEQAGADGITV-----HLREDRRHIQDRDVYDLKEALTTPFNI--EMAPTEEMIRIAEEIKPEQVTLVP 91 (237)
T ss_pred CCCCHHHHHHHHHHcCCCEEEe-----cCCCCcCcCCHHHHHHHHHHcCCCEEe--ccCCCHHHHHHHHHcCCCEEEECC
Confidence 3345567777888999998644 211221 22345677787765555554 333334688999999999999998
Q ss_pred ccc-------------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeec-CCCCCCccchhHHH
Q 023494 147 EQS-------------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVN-PGFGGQSFIESQVK 211 (281)
Q Consensus 147 Ea~-------------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~-pG~~GQ~f~~~~l~ 211 (281)
|.- ..+.+..+++.+++.|+++.+.+.|+ .+.++.-.+ .+|.|-+.|-. .-..++.-...-++
T Consensus 92 Ekr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~--~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~ 169 (237)
T TIGR00559 92 EARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD--KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQ 169 (237)
T ss_pred CCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHH
Confidence 742 01137889999999999999999986 333433322 48999875432 11111111123377
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHc-C-CcEEEEcccccCC---CCHHHHHHHHHHhcC
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-G-ANALVAGSAVFGA---KDYAEAIKGIKTSKR 275 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-G-AD~~VvGSaIf~a---~dp~~~~~~l~~~~~ 275 (281)
+|+...+...+ .++.+...-|+|.+|+..+.+. + .+-+-+|.+|+.. --.++++++|++.++
T Consensus 170 ~i~~aa~~A~~--lGL~VnAGHgLny~Nv~~i~~~~~~i~EvnIGHsiia~Al~~Gl~~AV~~m~~~~~ 236 (237)
T TIGR00559 170 RIVKASVHAHS--LGLKVNAGHGLNYHNVKYFAEILPYLDELNIGHAIIADAVYLGLEEAIREMRDLIK 236 (237)
T ss_pred HHHHHHHHHHH--cCCEEecCCCCCHHhHHHHHhCCCCceEEecCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 77777666554 4577889999999999998766 3 5889999888752 245678888887765
No 176
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=97.62 E-value=0.0015 Score=64.83 Aligned_cols=181 Identities=13% Similarity=0.147 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccc----cCCHHHH---HHcCcC--CCCCeeEEEEecChh---hHHHHHH-Hc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNI----TIGPLVV---DALRPV--TDLPLDVHLMIVEPE---QRVPDFI-KA 137 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~----~~G~~~I---~~ir~~--t~~~idaHLmv~dp~---~~i~~~~-~a 137 (281)
.+.+..+.+.++=.|++ ..|=||+ .+|..-+ +++.++ ++.++.+|.|..|.. .|.+.++ ..
T Consensus 41 ~~~~f~~~ii~at~~~v------~a~Kp~~afye~~G~~G~~~l~~~~~~~~~~~~vI~DaKrgDI~T~~~yA~a~f~~~ 114 (477)
T PRK05500 41 QLWTWLKFIIEETADLV------CAYKPTLGFYQALGSPGLELLLEVLAAIPPDIPIILDAKHGDLNTSTIFAKTIFEQW 114 (477)
T ss_pred HHHHHHHHHHHHhhCcc------cEEeccHHHHHhhChHHHHHHHHHHHHhccCCeEEEEecccChHHHHHHHHHHHhhc
Confidence 44555555555545543 2355775 4466333 222221 468899999998874 3666666 58
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHH-HHH-----------HhhccCCEEE----EEeecCCCC
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-AIE-----------CVLDVVDLVL----IMSVNPGFG 201 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie-~~~-----------~~l~~vD~Il----vmsV~pG~~ 201 (281)
|+|.||+|.-.. .+.+..+++. .|+.+-+....+.|-. .++ .+.+.+.-.. ++-|-
T Consensus 115 ~aDAiTv~pymG-~Dsl~pfl~~---~~kgvfvL~~tSNpga~~~Q~~~~~g~~ly~~v~~~~~~~~~~~~~g~Vv---- 186 (477)
T PRK05500 115 QVDAVTLSPYAG-QDHVAPFLVY---PDKGVFILCHTSNPGAIALQEYPTPENPFYLQVVKEAKTWGTPEQLGLEV---- 186 (477)
T ss_pred CCCEEEECCccC-ccchHHHHhc---CCCcEEEEEeCCCcCHHHHhhcccCCCcHHHHHHHHHHHhCCCCceEEEE----
Confidence 999999998653 6677777765 6666666553343321 222 2221111000 11111
Q ss_pred CCccchhH-HHHHHHHHHHhhhcCCCCeEEEecCCChh--cHHHHHHcCCc------EEEEcccccCCCCHHHHHHHHHH
Q 023494 202 GQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVGPK--NAYKVIEAGAN------ALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 202 GQ~f~~~~-l~kI~~lr~l~~~~~~~~~I~VDGGI~~e--~i~~~~~aGAD------~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
+.+ .+.++++|+..++ ..| .-.||..+ ++.+++++|.| .+.+|++|..++||.+.++++++
T Consensus 187 -----GAT~p~~~~~iR~~~p~----~~i-L~PGiGAQGg~~~~~~~~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~ 256 (477)
T PRK05500 187 -----GTTNPEVLAKIRQIAPE----RLI-LLRSIWAEKGNLNQILTAGLNSNGDGLLIPVPQDLLGAANLKEQVKSLRE 256 (477)
T ss_pred -----CCCChHHHHHHHHhCCC----CEE-EccccccCCCCHHHHHHhhcccCcCceEEEeCHHHhcCCCHHHHHHHHHH
Confidence 112 2345666666543 233 67888766 58999999998 89999999999999999999988
Q ss_pred hcC
Q 023494 273 SKR 275 (281)
Q Consensus 273 ~~~ 275 (281)
.+.
T Consensus 257 ~i~ 259 (477)
T PRK05500 257 EIN 259 (477)
T ss_pred HHH
Confidence 653
No 177
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.60 E-value=0.0011 Score=62.41 Aligned_cols=186 Identities=21% Similarity=0.256 Sum_probs=120.1
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--------hHHHHHHHc-CC
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--------QRVPDFIKA-GA 139 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--------~~i~~~~~a-GA 139 (281)
+.+.+..-+.++..|++.+-+=+---.+.. .-...+...|+.. .+|++-+..+ +..++..++ |-
T Consensus 93 y~s~~~~~~a~~asg~e~vTva~rr~~~~~--~~~~~~~~~~~~~-----~~~~lpNTag~~ta~eAv~~a~lare~~~~ 165 (326)
T PRK11840 93 YKDFEETAAAVEASGAEIVTVAVRRVNVSD--PGAPMLTDYIDPK-----KYTYLPNTAGCYTAEEAVRTLRLAREAGGW 165 (326)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEEEeecCcC--CCcchHHHhhhhc-----CCEECccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 345666666777888988766443322111 1124555555421 2355555443 233445565 56
Q ss_pred CEEEEc--cccc-ccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhccCCEEEEEe-ecC-CCCCCcc-chhHH
Q 023494 140 DIVSVH--CEQS-STIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVDLVLIMS-VNP-GFGGQSF-IESQV 210 (281)
Q Consensus 140 d~Itvh--~Ea~-~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~vD~Ilvms-V~p-G~~GQ~f-~~~~l 210 (281)
|||-+- .|.. ..+++.++++++++. |..+-...++ +....+.+.+. --+.+|. -.| | +|+.. .|+.+
T Consensus 166 ~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~--d~~~a~~l~~~-g~~avmPl~~pIG-sg~gv~~p~~i 241 (326)
T PRK11840 166 DLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSD--DPIAAKRLEDA-GAVAVMPLGAPIG-SGLGIQNPYTI 241 (326)
T ss_pred CeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHhc-CCEEEeecccccc-CCCCCCCHHHH
Confidence 887654 4421 245789999999998 9988777764 33334444332 2266776 344 5 45554 45554
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+.+ ++. .++++.||+||+ ++++....+.|+|.+-+-|+|.+++||...++.|+..
T Consensus 242 ~~~---~e~-----~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~a 297 (326)
T PRK11840 242 RLI---VEG-----ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLA 297 (326)
T ss_pred HHH---HHc-----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHH
Confidence 443 333 247899999999 8899999999999999999999999999999988864
No 178
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=97.59 E-value=0.0047 Score=56.77 Aligned_cols=175 Identities=15% Similarity=0.118 Sum_probs=108.6
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCc---ccccccC-CHHHHHHcCcCC--CCCeeEEEEecC-hhhHHHHHHHcCCCEE
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGR---FVPNITI-GPLVVDALRPVT--DLPLDVHLMIVE-PEQRVPDFIKAGADIV 142 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~---fvpn~~~-G~~~I~~ir~~t--~~~idaHLmv~d-p~~~i~~~~~aGAd~I 142 (281)
....+..+.|.++|+|+|++..-.+. +.....| ..+.++++++.. +.++.+.+.... ....++.+.+.|.+.|
T Consensus 20 ~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~i 99 (266)
T cd07944 20 EFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMI 99 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEE
Confidence 34456667888999999998532221 0000111 256777776542 345554332221 1356788889999986
Q ss_pred EEcccccccccHHHHHHHHHHcCCcEEEEE--CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 143 SVHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 143 tvh~Ea~~~~~i~~~l~~ik~~G~k~Glai--~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
.+-......+...+.++.+|+.|.++.+.+ ...++.+.+.++++. +|.|.+. -..|.....++.+.++.
T Consensus 100 ri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~----DT~G~~~P~~v~~lv~~ 175 (266)
T cd07944 100 RVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV----DSFGSMYPEDIKRIISL 175 (266)
T ss_pred EEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe----cCCCCCCHHHHHHHHHH
Confidence 555332134567788999999999887653 334566666666543 6766552 33454444555666777
Q ss_pred HHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 216 LRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 216 lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
+++.+++ +++|++ |-|....|.-..+++|++.+
T Consensus 176 l~~~~~~---~~~i~~H~Hn~~Gla~AN~laA~~aGa~~v 212 (266)
T cd07944 176 LRSNLDK---DIKLGFHAHNNLQLALANTLEAIELGVEII 212 (266)
T ss_pred HHHhcCC---CceEEEEeCCCccHHHHHHHHHHHcCCCEE
Confidence 7765431 256776 77888889999999999875
No 179
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=97.58 E-value=0.0095 Score=54.83 Aligned_cols=182 Identities=17% Similarity=0.121 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---CCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
++.++++.+.+.|+..+++ .++.+-|.-..-.+.++.|++. .++.+.++.-..+ .+.++.+.++|++.+.+-.|
T Consensus 66 ei~~~~~~~~~~g~~~~~l--~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~-~e~l~~Lk~aG~~~v~i~~E 142 (296)
T TIGR00433 66 EVLEEARKAKAAGATRFCL--VASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGLLD-PEQAKRLKDAGLDYYNHNLD 142 (296)
T ss_pred HHHHHHHHHHHCCCCEEEE--EEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCCCC-HHHHHHHHHcCCCEEEEccc
Confidence 4455566667778887664 3333334322113455555432 3444444432223 34678899999999999888
Q ss_pred cccc------------ccHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHhhc-----cCCEEEEE--eecCCCCCCccc
Q 023494 148 QSST------------IHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD-----VVDLVLIM--SVNPGFGGQSFI 206 (281)
Q Consensus 148 a~~~------------~~i~~~l~~ik~~G~k~Gl--ai~p~t~ie~~~~~l~-----~vD~Ilvm--sV~pG~~GQ~f~ 206 (281)
. +. +...+.++.+++.|++++. .+.++...+.+.+.+. .+|.+.+. ...||..=..+.
T Consensus 143 ~-~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~ 221 (296)
T TIGR00433 143 T-SQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNK 221 (296)
T ss_pred C-CHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCC
Confidence 3 21 1233567788899998764 3333444444444332 26766443 344565311222
Q ss_pred ----hhHHHHHHHHHHHhhhcCCCCeEEEecCCC--h-hcHHH-HHHcCCcEEEEcccccCC
Q 023494 207 ----ESQVKKISDLRRMCLEKGVNPWIEVDGGVG--P-KNAYK-VIEAGANALVAGSAVFGA 260 (281)
Q Consensus 207 ----~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~-e~i~~-~~~aGAD~~VvGSaIf~a 260 (281)
.+.++.+...|.+++. ..|-+.||=- . +..+. ++.+|||.+++|-+++..
T Consensus 222 ~~s~~~~~~~ia~~r~~lp~----~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~~ 279 (296)
T TIGR00433 222 ELSADDALKTIALARIIMPK----AEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTT 279 (296)
T ss_pred CCCHHHHHHHHHHHHHHCCc----ceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccCC
Confidence 3446667777777654 2455666653 1 22233 689999999999999864
No 180
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.0018 Score=57.50 Aligned_cols=183 Identities=18% Similarity=0.149 Sum_probs=114.7
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-|-.-|..+-....+.|.++|++.|+| +-+-..-.+.|+.+++. ++..+-+= -|-||. -++.+.++
T Consensus 14 ~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEI-------Tl~sp~a~e~I~~l~~~~p~~lIGAG-TVL~~~-q~~~a~~a 84 (211)
T COG0800 14 PVVPVIRGDDVEEALPLAKALIEGGIPAIEI-------TLRTPAALEAIRALAKEFPEALIGAG-TVLNPE-QARQAIAA 84 (211)
T ss_pred CeeEEEEeCCHHHHHHHHHHHHHcCCCeEEE-------ecCCCCHHHHHHHHHHhCcccEEccc-cccCHH-HHHHHHHc
Confidence 3667777667766666778889999999988 23445667788888764 32222221 234665 45778999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC--CCCCccchhHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG--FGGQSFIESQVKKISD 215 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG--~~GQ~f~~~~l~kI~~ 215 (281)
||+.+.=+.- -.++++.++++|+-..--+ .||-|....+-...+.+=+ .|+ ++|-. . ++.
T Consensus 85 Ga~fiVsP~~------~~ev~~~a~~~~ip~~PG~--~TptEi~~Ale~G~~~lK~---FPa~~~Gg~~----~---~ka 146 (211)
T COG0800 85 GAQFIVSPGL------NPEVAKAANRYGIPYIPGV--ATPTEIMAALELGASALKF---FPAEVVGGPA----M---LKA 146 (211)
T ss_pred CCCEEECCCC------CHHHHHHHHhCCCcccCCC--CCHHHHHHHHHcChhheee---cCccccCcHH----H---HHH
Confidence 9998764433 1367888888876443222 2566655554334554433 453 23321 1 222
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC-----CCHHHHHHHHHH
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA-----KDYAEAIKGIKT 272 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a-----~dp~~~~~~l~~ 272 (281)
+.--+ .++.+...|||+++|+++.+++|+..+=+||.++.. +|+.+..+..++
T Consensus 147 ~~gP~----~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~~~~~~~~~~~~i~~~a~~ 204 (211)
T COG0800 147 LAGPF----PQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVPKDLIAAGDWDRITELARE 204 (211)
T ss_pred HcCCC----CCCeEeecCCCCHHHHHHHHhCCceEEecCccccChhhhhcccHHHHHHHHHH
Confidence 22222 246799999999999999999997766668999853 566555444444
No 181
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.006 Score=55.94 Aligned_cols=178 Identities=22% Similarity=0.284 Sum_probs=115.1
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-C-CCCCeeEEEEecC-----hh-----hHHHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-V-TDLPLDVHLMIVE-----PE-----QRVPDFI 135 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-~-t~~~idaHLmv~d-----p~-----~~i~~~~ 135 (281)
.+.+++..++.+.++|+|.+.. + +-+++.... + .++|+.+||=-++ +. ..++.+.
T Consensus 41 gl~d~e~~v~~v~~~g~dav~~-----------~--~G~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai 107 (265)
T COG1830 41 GLEDPENIVAKVAEAGADAVAM-----------T--PGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAI 107 (265)
T ss_pred cccCHHHHHHHHHhcCCCEEEe-----------c--HhHHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHHH
Confidence 3458899999999999987643 1 224555433 3 3688888886652 11 1367888
Q ss_pred HcCCCEEEEcccccc------cccHHHHHHHHHHcCCcEEEEECCCCCHH---------HHHH---hhc--cCCEEEEEe
Q 023494 136 KAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLNPATSLS---------AIEC---VLD--VVDLVLIMS 195 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~------~~~i~~~l~~ik~~G~k~Glai~p~t~ie---------~~~~---~l~--~vD~Ilvms 195 (281)
.+|||.|.+|.--.+ .+.+.++.+.++++|+-+-+..-|-.+.- .+.. +.. .+|+|=.
T Consensus 108 ~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~-- 185 (265)
T COG1830 108 RLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT-- 185 (265)
T ss_pred hCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEee--
Confidence 999999999943211 23466778888999998887655543321 1111 101 1566632
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-------cHHHHHHcCCcEEEEcccccCCCCHHHHHH
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-------NAYKVIEAGANALVAGSAVFGAKDYAEAIK 268 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~ 268 (281)
-.||- ++ ..+++.+.+ ..++.+.||=+.+ -...++++||-.+++|+.||++++|++.++
T Consensus 186 ~ytg~------~e---~F~~vv~~~-----~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~ 251 (265)
T COG1830 186 KYTGD------PE---SFRRVVAAC-----GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVK 251 (265)
T ss_pred cCCCC------hH---HHHHHHHhC-----CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHH
Confidence 12221 12 233344333 2688899998873 345668899999999999999999999888
Q ss_pred HHHHhc
Q 023494 269 GIKTSK 274 (281)
Q Consensus 269 ~l~~~~ 274 (281)
.+....
T Consensus 252 Ai~~Iv 257 (265)
T COG1830 252 AIQAIV 257 (265)
T ss_pred HHHHHh
Confidence 877643
No 182
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.55 E-value=0.009 Score=60.26 Aligned_cols=190 Identities=15% Similarity=0.112 Sum_probs=110.9
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcc--cccccCCHHHHHHcCcCCCCCeeEEEEecC---h-------hhHHHHHHHcCCC
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRF--VPNITIGPLVVDALRPVTDLPLDVHLMIVE---P-------EQRVPDFIKAGAD 140 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~f--vpn~~~G~~~I~~ir~~t~~~idaHLmv~d---p-------~~~i~~~~~aGAd 140 (281)
-+..+...+.|+|+||+==.|+.. .+.-.--.++|+++.+....|+.+===+.+ | .+.++.++++|||
T Consensus 270 ve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Gad 349 (538)
T PLN02617 270 VELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGAD 349 (538)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcCCC
Confidence 355567778899999974444421 111111256788877665566655322333 2 2357889999999
Q ss_pred EEEEcccccccc----------cHHHHHHHHHHcCCc-EEEEECCC----------------------------------
Q 023494 141 IVSVHCEQSSTI----------HLHRTLNQIKDLGAK-AGVVLNPA---------------------------------- 175 (281)
Q Consensus 141 ~Itvh~Ea~~~~----------~i~~~l~~ik~~G~k-~Glai~p~---------------------------------- 175 (281)
-|++...+.... ++.-+-+.++++|-+ +.+++.+.
T Consensus 350 kV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 429 (538)
T PLN02617 350 KISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTV 429 (538)
T ss_pred EEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEEEEEE
Confidence 999997642110 234455556677877 55565532
Q ss_pred ------CC---HHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH
Q 023494 176 ------TS---LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI 244 (281)
Q Consensus 176 ------t~---ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~ 244 (281)
|. ++.++++.+. +.-|++-+++---..+-|.-+.++ ++++.. ++++.+-||++ ++++.++.
T Consensus 430 ~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~---~v~~~~-----~ipviasGG~g~~~d~~~~~ 501 (538)
T PLN02617 430 KGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVK---LVSDAV-----TIPVIASSGAGTPEHFSDVF 501 (538)
T ss_pred ecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHH---HHHhhC-----CCCEEEECCCCCHHHHHHHH
Confidence 11 2334444333 667877777542223335444443 334332 47888999998 88998888
Q ss_pred H-cCCcEEEEcccc-cCCCCHHHHHHHH
Q 023494 245 E-AGANALVAGSAV-FGAKDYAEAIKGI 270 (281)
Q Consensus 245 ~-aGAD~~VvGSaI-f~a~dp~~~~~~l 270 (281)
+ .|||...++|.+ |+.-++.+.-+.|
T Consensus 502 ~~~~~~a~~aa~~fh~~~~~~~~~k~~l 529 (538)
T PLN02617 502 SKTNASAALAAGIFHRKEVPISSVKEHL 529 (538)
T ss_pred hcCCccEEEEEeeeccCCCCHHHHHHHH
Confidence 6 679988877665 3333444333333
No 183
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.0036 Score=56.20 Aligned_cols=162 Identities=22% Similarity=0.311 Sum_probs=97.4
Q ss_pred HHHHHHcCCCeEEEE--eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecC---------hh-----hHHHHHHHcCC
Q 023494 76 VKAVELAGCDWIHVD--VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVE---------PE-----QRVPDFIKAGA 139 (281)
Q Consensus 76 l~~l~~~G~d~iHiD--ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~d---------p~-----~~i~~~~~aGA 139 (281)
+..+.++|+|.+++= ...|+.+|. .-+++..++..++| +|.|+.- ++ +-++.+.++|+
T Consensus 14 l~~A~~~GAdRiELC~~La~GG~TPS----yG~~k~a~~~~~ip--v~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~ 87 (241)
T COG3142 14 LLAAQAAGADRIELCDALAEGGLTPS----YGVIKEAVELSKIP--VYVMIRPRGGDFVYSDDELEIMLEDIRLARELGV 87 (241)
T ss_pred HHHHHHcCCceeehhhccccCCCCCC----HHHHHHHHhhcCCc--eEEEEecCCCCcccChHHHHHHHHHHHHHHHcCC
Confidence 556778999998872 556777774 44677666654444 5557731 11 23566789999
Q ss_pred CEEEEcccccc-ccc---HHHHHHHHHHcCCcEEEEECCC-----CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhH
Q 023494 140 DIVSVHCEQSS-TIH---LHRTLNQIKDLGAKAGVVLNPA-----TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 140 d~Itvh~Ea~~-~~~---i~~~l~~ik~~G~k~Glai~p~-----t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
+.|.+.+-... .-+ +++++.+.. -.++.++-. +|.+.++.+++. +..||- -+|..-..+.
T Consensus 88 ~GVV~G~lt~dg~iD~~~le~Li~aA~----gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILT------sGg~~sa~eg 157 (241)
T COG3142 88 QGVVLGALTADGNIDMPRLEKLIEAAG----GLGVTFHRAFDECPDPLEALEQLIELGVERILT------SGGKASALEG 157 (241)
T ss_pred CcEEEeeecCCCccCHHHHHHHHHHcc----CCceeeehhhhhcCCHHHHHHHHHHCCCcEEec------CCCcCchhhh
Confidence 99999976421 111 333443332 333433311 255556665553 666652 1343334555
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHH-HHcCCcEEEEcccc
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAV 257 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaI 257 (281)
+++|+++.+.. +..+.|.+.|||+++|+..+ ...|++-+ =||++
T Consensus 158 ~~~l~~li~~a---~gri~Im~GaGV~~~N~~~l~~~tg~~e~-H~s~~ 202 (241)
T COG3142 158 LDLLKRLIEQA---KGRIIIMAGAGVRAENIAELVLLTGVTEV-HGSAG 202 (241)
T ss_pred HHHHHHHHHHh---cCCEEEEeCCCCCHHHHHHHHHhcCchhh-hhccc
Confidence 66666555554 34588999999999999998 67777644 34444
No 184
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=97.51 E-value=0.02 Score=51.76 Aligned_cols=196 Identities=17% Similarity=0.211 Sum_probs=131.5
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~ 146 (281)
+.-+.-+....++++|+|-|-+ |--|.- -.-.+-+..|++....++.. -..-..++++.+.+.-++.+|+-.
T Consensus 22 ~~Pd~v~aA~~a~~aGAdgITv-----HlReDrRHI~d~Dv~~L~~~~~~~lNl--E~a~~~em~~ia~~~kP~~vtLVP 94 (239)
T PRK05265 22 NYPDPVRAALIAEQAGADGITV-----HLREDRRHIRDRDVRLLRETLKTELNL--EMAATEEMLDIALEVKPHQVTLVP 94 (239)
T ss_pred CCCCHHHHHHHHHHcCCCEEEe-----cCCCCcccCCHHHHHHHHHhcCCCEEe--ccCCCHHHHHHHHHCCCCEEEECC
Confidence 3446667778888999998644 211221 23456677788765455544 333334589999999999999998
Q ss_pred ccc-------------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCC--CCCCccchhHH
Q 023494 147 EQS-------------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG--FGGQSFIESQV 210 (281)
Q Consensus 147 Ea~-------------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG--~~GQ~f~~~~l 210 (281)
|.- ..+.+..+++.+++.|+++.+.+.|+ .+.++.-.+ .+|.|-+.|-.=. +.. -...-+
T Consensus 95 E~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~--~~qi~~A~~~GAd~VELhTG~yA~a~~~--~~~~el 170 (239)
T PRK05265 95 EKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPD--PEQIEAAAEVGADRIELHTGPYADAKTE--AEAAEL 170 (239)
T ss_pred CCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEechhhhcCCCc--chHHHH
Confidence 742 01237889999999999999999875 333333222 4899987654211 111 113447
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHH-cCCcEEEEcccccCC---CCHHHHHHHHHHhcCc
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVFGA---KDYAEAIKGIKTSKRP 276 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf~a---~dp~~~~~~l~~~~~~ 276 (281)
+++....++..+. ++.+....|+|.+|+..+.+ -+..=+-+|.+|+.. --.+++++++++.++.
T Consensus 171 ~~~~~aa~~a~~l--GL~VnAGHgLny~Nv~~i~~ip~i~EvnIGHsiia~Al~~Gl~~aV~~m~~~i~~ 238 (239)
T PRK05265 171 ERIAKAAKLAASL--GLGVNAGHGLNYHNVKPIAAIPGIEELNIGHAIIARALFVGLEEAVREMKRLMDE 238 (239)
T ss_pred HHHHHHHHHHHHc--CCEEecCCCCCHHhHHHHhhCCCCeEEccCHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 7777777776554 56788999999999999866 456778889887742 2456788888876653
No 185
>PRK06852 aldolase; Validated
Probab=97.51 E-value=0.0076 Score=56.57 Aligned_cols=183 Identities=14% Similarity=0.072 Sum_probs=113.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-CCCCCeeEEEEec---------Chh----hHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-VTDLPLDVHLMIV---------EPE----QRVPD 133 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-~t~~~idaHLmv~---------dp~----~~i~~ 133 (281)
.+.+++..++.+.++|+|-+-+ + .-+++.... ..+.++.+||=-. ||. --++.
T Consensus 57 gl~dp~~~i~~~~~~g~dav~~-----~--------~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVee 123 (304)
T PRK06852 57 DDADPEHLFRIASKAKIGVFAT-----Q--------LGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQ 123 (304)
T ss_pred ccCCHHHHHHHHHhcCCCEEEe-----C--------HHHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHH
Confidence 5568888999999988987532 1 224444333 3467788876542 342 13778
Q ss_pred HHHcC------CCEEEEccccc------ccccHHHHHHHHHHcCCcEEEEECCCCC-------HHHHHHhhc-----cCC
Q 023494 134 FIKAG------ADIVSVHCEQS------STIHLHRTLNQIKDLGAKAGVVLNPATS-------LSAIECVLD-----VVD 189 (281)
Q Consensus 134 ~~~aG------Ad~Itvh~Ea~------~~~~i~~~l~~ik~~G~k~Glai~p~t~-------ie~~~~~l~-----~vD 189 (281)
+...| ||.|.+|.--. ...++.++.++++++|+-+.+...|.-+ .+.+..... .+|
T Consensus 124 AvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGAD 203 (304)
T PRK06852 124 VVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGAD 203 (304)
T ss_pred HHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCC
Confidence 88888 88999995432 1235677888999999988765544432 122222211 268
Q ss_pred EEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh------cHHHHHH-cCCcEEEEcccccCCCC
Q 023494 190 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK------NAYKVIE-AGANALVAGSAVFGAKD 262 (281)
Q Consensus 190 ~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e------~i~~~~~-aGAD~~VvGSaIf~a~d 262 (281)
+|=+ -.|+..+ ...++.+.++ .+-. ...++.+.||=+.. .+...++ +||..+++||.||+.++
T Consensus 204 IVKv--~y~~~~~-~g~~e~f~~v---v~~~----g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 204 FVKV--NYPKKEG-ANPAELFKEA---VLAA----GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL 273 (304)
T ss_pred EEEe--cCCCcCC-CCCHHHHHHH---HHhC----CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC
Confidence 7732 2343111 1223444443 2222 13578899998742 3445567 99999999999999988
Q ss_pred H--HHHHHHHHHh
Q 023494 263 Y--AEAIKGIKTS 273 (281)
Q Consensus 263 p--~~~~~~l~~~ 273 (281)
| .+.++.+...
T Consensus 274 p~~~~~~~Ai~~I 286 (304)
T PRK06852 274 DEAVRMCNAIYAI 286 (304)
T ss_pred chHHHHHHHHHHH
Confidence 8 7777777654
No 186
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=97.51 E-value=0.0081 Score=54.87 Aligned_cols=172 Identities=18% Similarity=0.202 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeC----cc--cccccCCHHHHHHcCcC-CCCCeeEEEE--ecChhhHHHHHHHcCCCE
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDG----RF--VPNITIGPLVVDALRPV-TDLPLDVHLM--IVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG----~f--vpn~~~G~~~I~~ir~~-t~~~idaHLm--v~dp~~~i~~~~~aGAd~ 141 (281)
...+.++.+.+.|++++++--..+ .| .|...-..+.++.+++. .+..+.+-+- ..+ .+.++.+.++|+|.
T Consensus 23 ~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~-~~~i~~a~~~g~~~ 101 (263)
T cd07943 23 QVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGT-VDDLKMAADLGVDV 101 (263)
T ss_pred HHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccC-HHHHHHHHHcCCCE
Confidence 445666788899999998853221 11 12122244677777553 3344433110 223 24678889999998
Q ss_pred EEEcccccccccHHHHHHHHHHcCCcEEEEE--CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 142 VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 142 Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai--~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
+.+-........+.+.++.+|+.|.++.+.+ ...++.+.+.++.+. +|.|.+ +-..|.....++.+.++
T Consensus 102 iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l----~DT~G~~~P~~v~~lv~ 177 (263)
T cd07943 102 VRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV----TDSAGAMLPDDVRERVR 177 (263)
T ss_pred EEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE----cCCCCCcCHHHHHHHHH
Confidence 8765433123457889999999999887766 333455555554432 677754 33345444444455566
Q ss_pred HHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 215 DLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
.+++.++. .+|.+ |=|....|.-..+++|||.+
T Consensus 178 ~l~~~~~~----~~l~~H~Hn~~GlA~AN~laAi~aGa~~v 214 (263)
T cd07943 178 ALREALDP----TPVGFHGHNNLGLAVANSLAAVEAGATRI 214 (263)
T ss_pred HHHHhCCC----ceEEEEecCCcchHHHHHHHHHHhCCCEE
Confidence 66654431 35665 66777778888999999975
No 187
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=97.50 E-value=0.0066 Score=56.49 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcc-----cccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRF-----VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~f-----vpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
+..+.++.|.+.|++.|++ |.| +|..+--.+.++.|++..+..+-+ ++.+.. -++.+.++|.|.|.+-
T Consensus 27 ~k~~ia~~L~~~Gv~~IEv----gsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~--l~~~~~-~ie~A~~~g~~~v~i~ 99 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEV----ASFVSPKWVPQMADAAEVMAGIQRRPGVTYAA--LTPNLK-GLEAALAAGADEVAVF 99 (287)
T ss_pred HHHHHHHHHHHcCCCEEEe----CCCcCcccccccccHHHHHHhhhccCCCeEEE--EecCHH-HHHHHHHcCCCEEEEE
Confidence 3445667788999999988 445 444433356677776543333332 344433 4688899999988877
Q ss_pred cccc--------------ccccHHHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHhhcc-----CCEEEEEeecC
Q 023494 146 CEQS--------------STIHLHRTLNQIKDLGAKAGVVLN-----P---ATSLSAIECVLDV-----VDLVLIMSVNP 198 (281)
Q Consensus 146 ~Ea~--------------~~~~i~~~l~~ik~~G~k~Glai~-----p---~t~ie~~~~~l~~-----vD~IlvmsV~p 198 (281)
.-.. ..+.+.+.++.+|+.|+++...+. | .++.+.+.++.+. +|.|.+ +
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l----~ 175 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISL----G 175 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEe----c
Confidence 4431 011356788999999998754322 2 2355555555442 676654 2
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
-..|.....++.+.++.+++.++ +.+|.+ |-|....|.-..+++|||.+
T Consensus 176 DT~G~~~P~~v~~lv~~l~~~~~----~~~i~~H~Hn~~Gla~AN~laA~~aG~~~i 228 (287)
T PRK05692 176 DTIGVGTPGQVRAVLEAVLAEFP----AERLAGHFHDTYGQALANIYASLEEGITVF 228 (287)
T ss_pred cccCccCHHHHHHHHHHHHHhCC----CCeEEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 33454444555666777776543 245666 77888889999999999987
No 188
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=97.49 E-value=0.005 Score=57.85 Aligned_cols=159 Identities=16% Similarity=0.236 Sum_probs=104.3
Q ss_pred CCCCeeEEEEecChhhHHHH---HHHcC-CCEEEEccccc----------ccccHHHHHHHHHHc-CCcEEEEECCCCCH
Q 023494 114 TDLPLDVHLMIVEPEQRVPD---FIKAG-ADIVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPATSL 178 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~~---~~~aG-Ad~Itvh~Ea~----------~~~~i~~~l~~ik~~-G~k~Glai~p~t~i 178 (281)
.+.|+.+.++-.++++|.+. +.++| ||++-+-.-+. +.+.+.++++.+++. .+-+.+=+.|+.+.
T Consensus 91 ~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~ 170 (310)
T PRK02506 91 PNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFDI 170 (310)
T ss_pred CCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCCCCH
Confidence 35899999988899877543 44577 99998754321 013356777888764 45677788888776
Q ss_pred HHHHHhhc-----cCCEEEE-------EeecC--------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 179 SAIECVLD-----VVDLVLI-------MSVNP--------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 179 e~~~~~l~-----~vD~Ilv-------msV~p--------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
..+.+... .+|.|.. |.+++ |.+|....|..+..+.++++... .+++|..-
T Consensus 171 ~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~---~~ipIig~ 247 (310)
T PRK02506 171 VHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLN---PSIQIIGT 247 (310)
T ss_pred HHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcC---CCCCEEEE
Confidence 55554332 1333211 12211 12455567888888888877653 24789999
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEcccccCC-C-CHHHHHHHHHHhcC
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVFGA-K-DYAEAIKGIKTSKR 275 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~-dp~~~~~~l~~~~~ 275 (281)
|||. .+.+-+++.+|||.+=+||+++.. . -..+..++|.+.++
T Consensus 248 GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~ 293 (310)
T PRK02506 248 GGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIMA 293 (310)
T ss_pred CCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHHH
Confidence 9998 889999999999999999998752 2 23344455555443
No 189
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.48 E-value=0.0035 Score=59.03 Aligned_cols=140 Identities=10% Similarity=0.131 Sum_probs=94.2
Q ss_pred CCCeeEEEEecChhhHHH---HHHHcCCCEEEEccccc---------------ccccHHHHHHHHHHc---CCcEEEEEC
Q 023494 115 DLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL---GAKAGVVLN 173 (281)
Q Consensus 115 ~~~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~~---G~k~Glai~ 173 (281)
+.|+.+.|.-+||+.+.+ .+.+.|+|.|=+|.-+. ..+-+.++++.+++. ++.+.+=+.
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 479999999999998765 45678999999996542 011255677777764 366777665
Q ss_pred CCCC-HH---HHHHhhcc--CCEEEEEeecCCCCCCccchh--HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH
Q 023494 174 PATS-LS---AIECVLDV--VDLVLIMSVNPGFGGQSFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI 244 (281)
Q Consensus 174 p~t~-ie---~~~~~l~~--vD~IlvmsV~pG~~GQ~f~~~--~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~ 244 (281)
.+.. .+ .+.+.+.. +|.|.+ |++...|.+... -++.++++++.. ++++..-|||+ ++.+.+++
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~V---h~Rt~~~~y~g~~~~~~~i~~ik~~~-----~iPVi~nGdI~t~~da~~~l 213 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVV---HGRTKEDGYRAEHINWQAIGEIRQRL-----TIPVIANGEIWDWQSAQQCM 213 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEE---CCCCCccCCCCCcccHHHHHHHHhhc-----CCcEEEeCCcCCHHHHHHHH
Confidence 5432 12 22233332 788754 665555544322 245666666543 47898999995 88999876
Q ss_pred -HcCCcEEEEcccccCCCC
Q 023494 245 -EAGANALVAGSAVFGAKD 262 (281)
Q Consensus 245 -~aGAD~~VvGSaIf~a~d 262 (281)
..|+|.+-+|++.+..+.
T Consensus 214 ~~~g~DgVmiGRg~l~nP~ 232 (312)
T PRK10550 214 AITGCDAVMIGRGALNIPN 232 (312)
T ss_pred hccCCCEEEEcHHhHhCcH
Confidence 589999999999876543
No 190
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.48 E-value=0.00074 Score=63.04 Aligned_cols=86 Identities=16% Similarity=0.302 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEE
Q 023494 154 LHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (281)
Q Consensus 154 i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~ 230 (281)
+.+.++.+|+.- .+ +.+...| ++.+.+.++. +|.|++ + .|.|+.+ +++.++++. ++.|+
T Consensus 195 i~~av~~~r~~~~~~k--IeVEv~s-leea~ea~~~gaDiI~L-------D--n~s~e~~---~~av~~~~~---~~~ie 256 (296)
T PRK09016 195 IRQAVEKAFWLHPDVP--VEVEVEN-LDELDQALKAGADIIML-------D--NFTTEQM---REAVKRTNG---RALLE 256 (296)
T ss_pred HHHHHHHHHHhCCCCC--EEEEeCC-HHHHHHHHHcCCCEEEe-------C--CCChHHH---HHHHHhhcC---CeEEE
Confidence 567777777653 45 4444444 6677777664 899976 2 2545444 444444432 57899
Q ss_pred EecCCChhcHHHHHHcCCcEEEEcccc
Q 023494 231 VDGGVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 231 VDGGI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
+.||||++|+.++.+.|+|++++|+-.
T Consensus 257 aSGGI~~~ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 257 VSGNVTLETLREFAETGVDFISVGALT 283 (296)
T ss_pred EECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 999999999999999999999999743
No 191
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.47 E-value=0.001 Score=61.75 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=63.9
Q ss_pred cHHHHHHHHHHcC---CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 153 HLHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 153 ~i~~~l~~ik~~G---~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
.+.+.++.+|+.. .++-+-.. .++.+.+.++ .+|.|++ .+|.|+.+ +++.+++++ ...
T Consensus 178 ~i~~av~~~r~~~~~~~kIeVEv~---slee~~ea~~~gaDiImL---------Dn~s~e~l---~~av~~~~~---~~~ 239 (281)
T PRK06543 178 DLTEALRHVRAQLGHTTHVEVEVD---RLDQIEPVLAAGVDTIML---------DNFSLDDL---REGVELVDG---RAI 239 (281)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEeC---CHHHHHHHHhcCCCEEEE---------CCCCHHHH---HHHHHHhCC---CeE
Confidence 3667778888762 45555553 5666666655 4999986 23656554 444444443 357
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
|++.||||++|+.++.+.|+|++++|+-..+.
T Consensus 240 leaSGgI~~~ni~~yA~tGVD~Is~galths~ 271 (281)
T PRK06543 240 VEASGNVNLNTVGAIASTGVDVISVGALTHSV 271 (281)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 99999999999999999999999999866554
No 192
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.45 E-value=0.013 Score=58.00 Aligned_cols=166 Identities=19% Similarity=0.192 Sum_probs=102.7
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcCCCCCeeEEEEec-ChhhHHHHHHHcCCCEEEEcccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPVTDLPLDVHLMIV-EPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~t~~~idaHLmv~-dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+.++.+.+.|+|++=+ + |.|.- ...++..+.|.+..+... |=+.++ +|....+.+.+++.|++-+|...
T Consensus 268 eda~~a~~~GaD~lGf--I---f~~~SpR~V~~~~a~~i~~~l~v~~-VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e-- 339 (454)
T PRK09427 268 QDAKAAYDAGAVYGGL--I---FVEKSPRYVSLEQAQEIIAAAPLRY-VGVFRNADIEDIVDIAKQLSLAAVQLHGDE-- 339 (454)
T ss_pred HHHHHHHhCCCCEEee--E---eCCCCCCCCCHHHHHHHHHhCCCCE-EEEEeCCCHHHHHHHHHHcCCCEEEeCCCC--
Confidence 3456677789998744 1 32321 245777777765422222 333554 44445566778999999999863
Q ss_pred cccHHHHHHHHHH---cCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCC
Q 023494 151 TIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227 (281)
Q Consensus 151 ~~~i~~~l~~ik~---~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~ 227 (281)
++ +.++.+++ .++++.-++...+... ..++ ..+|++++=+ .+|-+|+.|.-..+. ... ..
T Consensus 340 --~~-~~~~~l~~~~~~~~~iikai~v~~~~~-~~~~-~~~d~~LlDs-~~GGtG~~~DW~~l~------~~~-----~~ 402 (454)
T PRK09427 340 --DQ-AYIDALREALPKTCQIWKAISVGDTLP-ARDL-QHVDRYLLDN-GQGGTGQTFDWSLLP------GQS-----LD 402 (454)
T ss_pred --CH-HHHHHHHhhcCCCCeEEEEeecCchhh-hhhh-cCCCEEEEcC-CCCCCCCccChHHhh------hcc-----cC
Confidence 12 34556665 2466666776644332 2222 2479988754 446568887643321 111 24
Q ss_pred eEEEecCCChhcHHHHHHcCCcEEEEcccccCC---CCHH
Q 023494 228 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA---KDYA 264 (281)
Q Consensus 228 ~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a---~dp~ 264 (281)
++.+.||+|++|+.+++..++.++=+-|.+=.. .|+.
T Consensus 403 p~iLAGGL~peNV~~ai~~~P~gVDVsSGVE~~pG~KD~~ 442 (454)
T PRK09427 403 NVLLAGGLNPDNCQQAAQLGCAGLDFNSGVESAPGIKDAQ 442 (454)
T ss_pred CEEEECCCCHHHHHHHHhcCCCEEEeCCcccCCCCCcCHH
Confidence 677999999999999988889888887777532 4654
No 193
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.45 E-value=0.00044 Score=61.53 Aligned_cols=79 Identities=10% Similarity=0.252 Sum_probs=56.8
Q ss_pred CCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 174 PATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 174 p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
...|++..+.|.+ .+|.+.+...+..+.++......+ +++++.. +.++.++|||+ ++.+.++.++|||.+
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i---~~i~~~~-----~~pv~~~GgI~~~e~~~~~~~~Gad~v 99 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELI---EEIVKAV-----GIPVQVGGGIRSLEDIERLLDLGVSRV 99 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHH---HHHHHhc-----CCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 3456666666654 378887776665555555554444 4444432 36899999999 799999999999999
Q ss_pred EEcccccCC
Q 023494 252 VAGSAVFGA 260 (281)
Q Consensus 252 VvGSaIf~a 260 (281)
++|++.+..
T Consensus 100 vigs~~l~d 108 (234)
T cd04732 100 IIGTAAVKN 108 (234)
T ss_pred EECchHHhC
Confidence 999998854
No 194
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=97.45 E-value=0.0056 Score=60.69 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=110.7
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeC-cccccccC----CHHHHHHcCcC-CCCCeeEEEEecChh-----------hHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDG-RFVPNITI----GPLVVDALRPV-TDLPLDVHLMIVEPE-----------QRVP 132 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~~~----G~~~I~~ir~~-t~~~idaHLmv~dp~-----------~~i~ 132 (281)
.+..+.++.+.++|++.|++- -| +|--...| -.+.++.+++. ++.++.+.+-..|.. .+++
T Consensus 25 ~dkl~Ia~~Ld~~Gv~~IE~~--ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~ 102 (467)
T PRK14041 25 EDMLPALEAFDRMGFYSMEVW--GGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK 102 (467)
T ss_pred HHHHHHHHHHHHcCCCEEEec--CCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Confidence 344556677888899988773 11 11111111 24667777765 566676655554432 2478
Q ss_pred HHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCC
Q 023494 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ 203 (281)
.+.++|+|.+.+-.......++...++.+|+.|+.+...+ .|..+.+.+.++.+. +|.|.+ .-..|.
T Consensus 103 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i----~Dt~G~ 178 (467)
T PRK14041 103 KVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICI----KDMAGL 178 (467)
T ss_pred HHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE----CCccCC
Confidence 8899999988777544234568889999999999887544 455566655555432 677655 223454
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
....++.+.++.+++.+ +++|.+ |-|....|.-..+++|||++=+
T Consensus 179 l~P~~v~~Lv~~lk~~~-----~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~ 227 (467)
T PRK14041 179 LTPKRAYELVKALKKKF-----GVPVEVHSHCTTGLASLAYLAAVEAGADMFDT 227 (467)
T ss_pred cCHHHHHHHHHHHHHhc-----CCceEEEecCCCCcHHHHHHHHHHhCCCEEEe
Confidence 44445556677776654 246665 7888888999999999998643
No 195
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.45 E-value=0.0057 Score=55.29 Aligned_cols=175 Identities=16% Similarity=0.171 Sum_probs=111.3
Q ss_pred eccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc----cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHH--HHHcC
Q 023494 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI----TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPD--FIKAG 138 (281)
Q Consensus 65 la~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~----~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~--~~~aG 138 (281)
+++|.... ++-+.+.+-|-+- |.+|. .+=.+.+..++ .+.++.+-+-..+|+.|.+. ..+.+
T Consensus 25 ~~~d~~t~-~a~~~~~~rgr~e---------f~~~~e~~~~~i~~e~~~~~--~~~~vivnv~~~~~ee~~~~a~~v~~~ 92 (231)
T TIGR00736 25 YNADRATY-KASRDIEKRGRKE---------FSFNLEEFNSYIIEQIKKAE--SRALVSVNVRFVDLEEAYDVLLTIAEH 92 (231)
T ss_pred ccCCHHHH-HHHHHHHHcCCcc---------cCcCcccHHHHHHHHHHHHh--hcCCEEEEEecCCHHHHHHHHHHHhcC
Confidence 44554333 4445555555443 34443 22233444444 34688888888999988654 34568
Q ss_pred CCEEEEccccc---------------ccccHHHHHHHHHHcCCcEEEEECCCCCH-H--HHHHhhc--cCCEEEEEeecC
Q 023494 139 ADIVSVHCEQS---------------STIHLHRTLNQIKDLGAKAGVVLNPATSL-S--AIECVLD--VVDLVLIMSVNP 198 (281)
Q Consensus 139 Ad~Itvh~Ea~---------------~~~~i~~~l~~ik~~G~k~Glai~p~t~i-e--~~~~~l~--~vD~IlvmsV~p 198 (281)
+|+|-+-.-+. ..+.+.++++.+++.++.+.+=+.++.+. + .+...+. .+|.|.+ +.
T Consensus 93 ~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V---d~ 169 (231)
T TIGR00736 93 ADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV---DA 169 (231)
T ss_pred CCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE---ee
Confidence 99988754331 12236677888888888888888876432 1 2222222 3888866 44
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.|.+. ..++.|+++++-++ +++|..-|||. .+.+.+++++|||.+-+|+++++.
T Consensus 170 ~~~g~~~--a~~~~I~~i~~~~~----~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 170 MYPGKPY--ADMDLLKILSEEFN----DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred CCCCCch--hhHHHHHHHHHhcC----CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 4444322 34677777776542 26788899998 899999999999999999998753
No 196
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.44 E-value=0.0012 Score=61.31 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcC---CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~G---~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+.+.++.+|++. .++-+-.. .++++.+.++ .+|.|++ + .|.|+ .++++.++++. ..++
T Consensus 180 i~~ai~~~r~~~~~~~kIeVEv~---tleea~ea~~~gaDiI~L-------D--n~s~e---~l~~av~~~~~---~~~l 241 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEVEVD---TLDQLEEALELGVDAVLL-------D--NMTPD---TLREAVAIVAG---RAIT 241 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeC---CHHHHHHHHHcCCCEEEe-------C--CCCHH---HHHHHHHHhCC---CceE
Confidence 667888888763 45555554 5556666665 4999976 2 24444 44555555443 3579
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.||||++|++++.+.|+|++++|+-..++
T Consensus 242 eaSGGI~~~ni~~yA~tGVD~Is~Galthsa 272 (281)
T PRK06106 242 EASGRITPETAPAIAASGVDLISVGWLTHSA 272 (281)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEeChhhcCC
Confidence 9999999999999999999999999866644
No 197
>PLN02826 dihydroorotate dehydrogenase
Probab=97.43 E-value=0.018 Score=56.32 Aligned_cols=192 Identities=21% Similarity=0.254 Sum_probs=122.7
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc----------------------cc---cCCHHHH-HHcCcCC
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP----------------------NI---TIGPLVV-DALRPVT 114 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp----------------------n~---~~G~~~I-~~ir~~t 114 (281)
.|-.+++=+.+-.+++..+.+.|...+++ |+.+| .+ ..|.+.+ +.+++..
T Consensus 85 NPvglAAG~dkn~~~~~~l~~lGfG~vev----gTVT~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~~~~l~~~~ 160 (409)
T PLN02826 85 NPIGLAAGFDKNAEAVEGLLGLGFGFVEI----GSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAVAKRLGAQH 160 (409)
T ss_pred CCCEECcccCCCHHHHHHHHhcCCCeEEe----CCccCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHHHHHHHHHh
Confidence 46677776677778899988889888887 33322 11 2354443 4443211
Q ss_pred -------------------------CCCeeEEEEec-----ChhhHHHHHHHcC--CCEEEEcccccc---------ccc
Q 023494 115 -------------------------DLPLDVHLMIV-----EPEQRVPDFIKAG--ADIVSVHCEQSS---------TIH 153 (281)
Q Consensus 115 -------------------------~~~idaHLmv~-----dp~~~i~~~~~aG--Ad~Itvh~Ea~~---------~~~ 153 (281)
+.++-+-+--+ .+.+|.+.+..++ ||++.+-.-+.. .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~ 240 (409)
T PLN02826 161 GKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQ 240 (409)
T ss_pred hhcccccccccccccccccccccccCceEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHH
Confidence 11455544323 3567876665554 999998754321 123
Q ss_pred HHHHHHHHHHc----------CCcEEEEECCCCCHHHHHHhhc-----cCCEEEEEe------e---------c-CCCCC
Q 023494 154 LHRTLNQIKDL----------GAKAGVVLNPATSLSAIECVLD-----VVDLVLIMS------V---------N-PGFGG 202 (281)
Q Consensus 154 i~~~l~~ik~~----------G~k~Glai~p~t~ie~~~~~l~-----~vD~Ilvms------V---------~-pG~~G 202 (281)
+.++++.+++. .+.+.+=+.|+.+.+.+.++++ .+|-|.+-- . . -|.+|
T Consensus 241 l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG 320 (409)
T PLN02826 241 LKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSG 320 (409)
T ss_pred HHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCC
Confidence 45666666522 3455666888876555444433 277765431 0 1 13567
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+..+.+++.|+++++.... +++|..+|||. .+++-+.+.+||+.+=+||+++-
T Consensus 321 ~pl~~~sl~~v~~l~~~~~~---~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 321 KPLFDLSTEVLREMYRLTRG---KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred ccccHHHHHHHHHHHHHhCC---CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence 77778888888888877642 47899999999 77999999999999999999764
No 198
>PRK14567 triosephosphate isomerase; Provisional
Probab=97.40 E-value=0.003 Score=57.79 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=87.9
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHH------------HHHHhhccCCE
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS------------AIECVLDVVDL 190 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie------------~~~~~l~~vD~ 190 (281)
.+++.+.|++++.+. .| +.+.+.+-++.+.++|+.+-+-+.- |.-+ .+...++.++.
T Consensus 78 ~~mLkd~G~~yviiGHSERR~~f~E--td~~v~~Kv~~al~~gl~pI~CiGE-t~eere~g~~~~vv~~Ql~~~l~~i~~ 154 (253)
T PRK14567 78 ARMLEDIGCDYLLIGHSERRSLFAE--SDEDVFKKLNKIIDTTITPVVCIGE-SLDDRQSGKLKQVLATQLSLILENLSV 154 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCC--CHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHHcCCHHHHHHHHHHHHHccCCH
Confidence 568899999999875 34 2455677778888999998887752 2111 12223322211
Q ss_pred ----EEEEeecCCC---CCCccchhHHHH-HHHHHHHhhhc----CCCCeEEEecCCChhcHHHHHHcC-CcEEEEcccc
Q 023494 191 ----VLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLEK----GVNPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAV 257 (281)
Q Consensus 191 ----IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~~----~~~~~I~VDGGI~~e~i~~~~~aG-AD~~VvGSaI 257 (281)
=++..-+|-+ +|+.-.|+..++ .+.+|+.+.+. ..+++|.-.|+|+++|+.++.+.+ +|++-+|++.
T Consensus 155 ~~~~~ivIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgas 234 (253)
T PRK14567 155 EQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGAS 234 (253)
T ss_pred HHhCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhh
Confidence 0223346633 354433443332 23344443221 235788899999999999998888 9999999999
Q ss_pred cCCCCHHHHHHHHHH
Q 023494 258 FGAKDYAEAIKGIKT 272 (281)
Q Consensus 258 f~a~dp~~~~~~l~~ 272 (281)
.+.+++.+-++...+
T Consensus 235 L~~~~F~~Ii~~~~~ 249 (253)
T PRK14567 235 LKAAEFNEIINQANK 249 (253)
T ss_pred hcHHHHHHHHHHHHh
Confidence 887777766665443
No 199
>PRK08185 hypothetical protein; Provisional
Probab=97.39 E-value=0.016 Score=53.97 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=112.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
|+..+.-.++.+++.+...| +-+-.|+ |.+ ..+. .+++.+.+....|+.+||==..-.+.++.+.++|.+.|-+=
T Consensus 22 n~e~~~avi~AAee~~sPvI-l~~~~~~~~~~~-~~~~-~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D 98 (283)
T PRK08185 22 DSCFLRAVVEEAEANNAPAI-IAIHPNELDFLG-DNFF-AYVRERAKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVMID 98 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEE-EEeCcchhhhcc-HHHH-HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 44444556677788887765 5544443 222 1222 22333333456899999855444457888999999887776
Q ss_pred ccccccc-c---HHHHHHHHHHcCCcE----EEEEC----------C--CCCHHHHHHhhcc--CCEEEE-----EeecC
Q 023494 146 CEQSSTI-H---LHRTLNQIKDLGAKA----GVVLN----------P--ATSLSAIECVLDV--VDLVLI-----MSVNP 198 (281)
Q Consensus 146 ~Ea~~~~-~---i~~~l~~ik~~G~k~----Glai~----------p--~t~ie~~~~~l~~--vD~Ilv-----msV~p 198 (281)
.-..+.+ + -.++++.++++|+.+ |..=. . -|+.+...++... +|++.+ +++++
T Consensus 99 ~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~ 178 (283)
T PRK08185 99 GSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYP 178 (283)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcC
Confidence 4432221 2 335566667777654 33101 0 3466666777664 999877 44433
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+-..... .+++|+++++.. ++++..=||++ .+.++++++.|+.-+=+++.+..
T Consensus 179 ~~~kp~L---~~e~l~~I~~~~-----~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~ 233 (283)
T PRK08185 179 KDKKPEL---QMDLLKEINERV-----DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKY 233 (283)
T ss_pred CCCCCCc---CHHHHHHHHHhh-----CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHH
Confidence 2111112 277777777654 47899999987 67999999999999999998864
No 200
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=97.39 E-value=0.0041 Score=56.66 Aligned_cols=175 Identities=18% Similarity=0.182 Sum_probs=110.0
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
..++.+...|.|++-+|.-+|.+ +..-=...++..+. .+....|-+=-.++. .+..+.++|++.|.++.-. +.++
T Consensus 24 ~~~e~~~~~g~D~v~iDlEH~~~--~~~~~~~~~~a~~~-~g~~~~VRv~~~~~~-~i~~~Ld~Ga~gIivP~v~-s~e~ 98 (249)
T TIGR02311 24 YAAEICAGAGFDWLLIDGEHAPN--DVRTILSQLQALAP-YPSSPVVRPAIGDPV-LIKQLLDIGAQTLLVPMIE-TAEQ 98 (249)
T ss_pred HHHHHHHhcCCCEEEEeccCCCC--CHHHHHHHHHHHHh-cCCCcEEECCCCCHH-HHHHHhCCCCCEEEecCcC-CHHH
Confidence 55667778899999999999953 12111113333332 234445543234443 6788999999999988554 3667
Q ss_pred HHHHHHHHHHc--CCc---------------------------EEEEECCCCCHHHHHHhh--ccCCEEEEEe----ecC
Q 023494 154 LHRTLNQIKDL--GAK---------------------------AGVVLNPATSLSAIECVL--DVVDLVLIMS----VNP 198 (281)
Q Consensus 154 i~~~l~~ik~~--G~k---------------------------~Glai~p~t~ie~~~~~l--~~vD~Ilvms----V~p 198 (281)
.+++++.+|-. |.+ +...|....-++.+++++ +.+|.+.+.+ ..-
T Consensus 99 a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~a~~gvd~l~~G~~DLs~sl 178 (249)
T TIGR02311 99 AEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLEEIAAVEGVDGVFIGPADLAASM 178 (249)
T ss_pred HHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHHHHHHHCCCCCcEEEECHHHHHHhc
Confidence 88888887721 211 223343333456677766 4578888753 234
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
|..++...|+..+-++++++.+..++.. ..+ -.-+++.++.+++.|++.+++|+.
T Consensus 179 G~~~~~~~~~~~~a~~~v~~~~~~a~~~--~Gi-~~~~~~~~~~~~~~G~~~~~~~~D 233 (249)
T TIGR02311 179 GHLGNPSHPEVQAAIDDAIERIKAAGKA--AGI-LTADPKLARQYLKLGALFVAVGVD 233 (249)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHcCCc--eee-cCCCHHHHHHHHHcCCCEEEEchH
Confidence 5556555676677777777777665432 222 234578899999999999999965
No 201
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.0049 Score=56.24 Aligned_cols=137 Identities=18% Similarity=0.270 Sum_probs=87.9
Q ss_pred HHHHHHcCCCEEEEc-cc-----ccccccHHHHHHHHHHcCCcEEEEECCCCC--------H----HHHHHhhccC----
Q 023494 131 VPDFIKAGADIVSVH-CE-----QSSTIHLHRTLNQIKDLGAKAGVVLNPATS--------L----SAIECVLDVV---- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~E-----a~~~~~i~~~l~~ik~~G~k~Glai~p~t~--------i----e~~~~~l~~v---- 188 (281)
.+++.++|++++.+. -| ..+++.+..-+++++++|+.+.+=+. +|. . ..+...+...
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvG-Etl~~reag~t~~v~~~Ql~~~l~~l~~~~ 159 (251)
T COG0149 81 AEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVG-ETLEEREAGKTLEVLKRQLAAALAALSPEA 159 (251)
T ss_pred HHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcC-CCHHHHhccChHHHHHHHHHHHHhhcCccc
Confidence 567889999988874 22 11244577888899999999777664 233 0 1122223322
Q ss_pred -CEEEEEeecC----CCCCCccchhHHHH-HHHHHHHhhhc---CCCCeEEEecCCChhcHHHH-HHcCCcEEEEccccc
Q 023494 189 -DLVLIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLEK---GVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVF 258 (281)
Q Consensus 189 -D~IlvmsV~p----G~~GQ~f~~~~l~k-I~~lr~l~~~~---~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaIf 258 (281)
++|. .+| | +|-+-.++..+. .+.+|..+.+. ..+++|.-.|||+++|+.++ .+.++|.+-+|++..
T Consensus 160 ~~vIA---YEPvWAIG-TG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAsl 235 (251)
T COG0149 160 NIVIA---YEPVWAIG-TGKSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPDIDGALVGGASL 235 (251)
T ss_pred CeEEE---ECCHHHhc-CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceee
Confidence 3443 455 5 343333333333 22333333321 13678999999999998865 788999999999999
Q ss_pred CCCCHHHHHHHHHH
Q 023494 259 GAKDYAEAIKGIKT 272 (281)
Q Consensus 259 ~a~dp~~~~~~l~~ 272 (281)
+++|+.+.++.+.+
T Consensus 236 ka~~f~~ii~~~~~ 249 (251)
T COG0149 236 KADDFLAILEALAK 249 (251)
T ss_pred cchhHHHHHHHHhh
Confidence 99999988877654
No 202
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=97.38 E-value=0.0085 Score=59.18 Aligned_cols=172 Identities=17% Similarity=0.215 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeC-ccccc---ccC-CHHHHHHcCcC-CCCCeeEEEEecCh-----------hhHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDG-RFVPN---ITI-GPLVVDALRPV-TDLPLDVHLMIVEP-----------EQRVPD 133 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG-~fvpn---~~~-G~~~I~~ir~~-t~~~idaHLmv~dp-----------~~~i~~ 133 (281)
+..+.++.+.++|++.|++ .-| +|--. .+. ..+.++.+++. ++.++...+-..|. ..+++.
T Consensus 27 dkl~ia~~Ld~~Gv~~IE~--~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~ 104 (448)
T PRK12331 27 EMLPILEKLDNAGYHSLEM--WGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQK 104 (448)
T ss_pred HHHHHHHHHHHcCCCEEEe--cCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHH
Confidence 4445566778889998877 222 12111 111 23567777765 56666554543333 235778
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----CCCCCHHHHHHhhc-----cCCEEEEEeecCCCCCCc
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----NPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----~p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~ 204 (281)
+.++|+|.+.+-.......++.+.++.+|+.|+.+.+.+ .|-++.+.+.++.. .+|.|.+- -..|..
T Consensus 105 A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~----Dt~G~l 180 (448)
T PRK12331 105 SVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIK----DMAGIL 180 (448)
T ss_pred HHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEc----CCCCCC
Confidence 899999988777543234568889999999998865433 34445555544433 26777652 334543
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
....+.+.++.+++.+ +.+|.+ |-|....|.-..+++|||++=+
T Consensus 181 ~P~~v~~lv~alk~~~-----~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~ 228 (448)
T PRK12331 181 TPYVAYELVKRIKEAV-----TVPLEVHTHATSGIAEMTYLKAIEAGADIIDT 228 (448)
T ss_pred CHHHHHHHHHHHHHhc-----CCeEEEEecCCCCcHHHHHHHHHHcCCCEEEe
Confidence 4445556677776654 357777 8899999999999999998643
No 203
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=97.38 E-value=0.0035 Score=57.01 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=85.6
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCCCHH------------HHHHhhccCCE--
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSLS------------AIECVLDVVDL-- 190 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie------------~~~~~l~~vD~-- 190 (281)
.+++.++|++++.+. .|- .+.+.+.+-++.+.++|+++.+-+.- |.-+ .+...++.++.
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE-~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~ 155 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGE-TLEEREAGKTEEVVAAQLAAVLAGVEDLA 155 (242)
T ss_pred HHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHcCCHHHHHHHHHHHHHhcchhhc
Confidence 678899999998885 221 13567888888899999998887752 2211 12222222110
Q ss_pred EEEEeecCCC---CCCccchh-HHHHHHHHHHHhhhcC----CCCeEEEecCCChhcHHHHHHcC-CcEEEEcccccCCC
Q 023494 191 VLIMSVNPGF---GGQSFIES-QVKKISDLRRMCLEKG----VNPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVFGAK 261 (281)
Q Consensus 191 IlvmsV~pG~---~GQ~f~~~-~l~kI~~lr~l~~~~~----~~~~I~VDGGI~~e~i~~~~~aG-AD~~VvGSaIf~a~ 261 (281)
=+++.-+|=+ +|..-.++ .-+-++.+|+.+.+.. .+++|.-.|+|+++|+.++.+.+ +|++-+|++..+.+
T Consensus 156 ~~iIAYEPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~ 235 (242)
T cd00311 156 PVVIAYEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAE 235 (242)
T ss_pred CeEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhhCHH
Confidence 0223346622 35544444 3444566666665432 25788899999999999999999 99999999988655
Q ss_pred CHH
Q 023494 262 DYA 264 (281)
Q Consensus 262 dp~ 264 (281)
++.
T Consensus 236 ~f~ 238 (242)
T cd00311 236 SFL 238 (242)
T ss_pred HHH
Confidence 443
No 204
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=97.38 E-value=0.0068 Score=61.69 Aligned_cols=172 Identities=18% Similarity=0.199 Sum_probs=109.5
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeC-ccc---ccccC-CHHHHHHcCcC-CCCCeeEEEEecCh-------h----hHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDG-RFV---PNITI-GPLVVDALRPV-TDLPLDVHLMIVEP-------E----QRVP 132 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG-~fv---pn~~~-G~~~I~~ir~~-t~~~idaHLmv~dp-------~----~~i~ 132 (281)
.+..+.++.+.++|++.|++- -| +|- +..+. -.+.++.+++. ++.++-+.+-..|. . .+++
T Consensus 21 ~dkl~ia~~L~~~Gv~~IE~~--GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~ 98 (582)
T TIGR01108 21 EDMLPIAEKLDDVGYWSLEVW--GGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVK 98 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEec--CCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHH
Confidence 344556677788899988773 11 121 11111 24567888763 66666665433332 2 3577
Q ss_pred HHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCC
Q 023494 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ 203 (281)
.+.++|.|.+.+-.......++...++.+|+.|+.+...+ +|-.+.+.+.++++. +|.|.+ .-..|-
T Consensus 99 ~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i----~Dt~G~ 174 (582)
T TIGR01108 99 KAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICI----KDMAGI 174 (582)
T ss_pred HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE----CCCCCC
Confidence 8899999988777543234678889999999999887653 443455555555432 677654 233344
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
.....+.+.++.+++.++ .+|.+ |-|....|.-..+++|||++=
T Consensus 175 ~~P~~v~~lv~~lk~~~~-----~pi~~H~Hnt~Gla~An~laAveaGa~~vd 222 (582)
T TIGR01108 175 LTPKAAYELVSALKKRFG-----LPVHLHSHATTGMAEMALLKAIEAGADGID 222 (582)
T ss_pred cCHHHHHHHHHHHHHhCC-----CceEEEecCCCCcHHHHHHHHHHhCCCEEE
Confidence 444455666777776542 45554 889998899999999999763
No 205
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.37 E-value=0.0078 Score=56.90 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=96.7
Q ss_pred HHHHcCcC-CCCCeeEEEEec--Ch--hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH
Q 023494 106 VVDALRPV-TDLPLDVHLMIV--EP--EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 180 (281)
Q Consensus 106 ~I~~ir~~-t~~~idaHLmv~--dp--~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~ 180 (281)
.++.+|+. +++||-+-|+.. +| ...++.+.+.++..|+++.-. +.. ++.+|+.|+++.... ++++.
T Consensus 45 ~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~-----P~~-~~~lk~~Gi~v~~~v---~s~~~ 115 (320)
T cd04743 45 LLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGR-----PDQ-ARALEAIGISTYLHV---PSPGL 115 (320)
T ss_pred HHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCC-----hHH-HHHHHHCCCEEEEEe---CCHHH
Confidence 45566774 789999999764 33 246777889999999999653 223 588899999988655 35555
Q ss_pred HHHhhc-cCCEEEEEeecCCC-CCC--cc--chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCC-----
Q 023494 181 IECVLD-VVDLVLIMSVNPGF-GGQ--SF--IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGA----- 248 (281)
Q Consensus 181 ~~~~l~-~vD~IlvmsV~pG~-~GQ--~f--~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGA----- 248 (281)
.+...+ .+|.|.+-..+.|- .|. .| .|+.++.+... ..+....++++...|||. -..+..+...||
T Consensus 116 A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~--~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~ 193 (320)
T cd04743 116 LKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAA--NGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAER 193 (320)
T ss_pred HHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHh--hcccccCCccEEEEcCCCCHHHHHHHHHcCCccccc
Confidence 666555 49999988777753 231 12 23333333211 101122358899999997 556677778887
Q ss_pred ---cEEEEcccc-cCCCC
Q 023494 249 ---NALVAGSAV-FGAKD 262 (281)
Q Consensus 249 ---D~~VvGSaI-f~a~d 262 (281)
+.+.+|+.+ +..|.
T Consensus 194 Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 194 GAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred ccccEEEEccHHhcchhh
Confidence 899999775 44444
No 206
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.37 E-value=0.008 Score=58.59 Aligned_cols=151 Identities=18% Similarity=0.166 Sum_probs=99.7
Q ss_pred HHHcCcC-CCCCeeEEEEec-ChhhH---HHHHHHcCCCEEEEccccc--------------ccccHHHHHHHHHHc-CC
Q 023494 107 VDALRPV-TDLPLDVHLMIV-EPEQR---VPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDL-GA 166 (281)
Q Consensus 107 I~~ir~~-t~~~idaHLmv~-dp~~~---i~~~~~aGAd~Itvh~Ea~--------------~~~~i~~~l~~ik~~-G~ 166 (281)
++.+++. .+.++.+-+.-. +++.| .+.+.++|+|++.+-.-+. ..+.+.++++.+++. .+
T Consensus 90 ~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~ 169 (420)
T PRK08318 90 IRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRL 169 (420)
T ss_pred HHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCC
Confidence 3344433 356777888877 77754 4455678999998753321 112456777777765 46
Q ss_pred cEEEEECCCC-CHHHHHHhhc--cCCEEEE-------Eee-----------cC-----CCCCCccchhHHHHHHHHHHHh
Q 023494 167 KAGVVLNPAT-SLSAIECVLD--VVDLVLI-------MSV-----------NP-----GFGGQSFIESQVKKISDLRRMC 220 (281)
Q Consensus 167 k~Glai~p~t-~ie~~~~~l~--~vD~Ilv-------msV-----------~p-----G~~GQ~f~~~~l~kI~~lr~l~ 220 (281)
-+.+=|.|+. .+..+...+. .+|-|.+ |.+ ++ |++|....|-.++.|+++++..
T Consensus 170 Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~ 249 (420)
T PRK08318 170 PVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDP 249 (420)
T ss_pred cEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhcc
Confidence 6677777763 4444434332 3777663 211 11 4456667777888888887754
Q ss_pred hhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 221 LEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 221 ~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.. .+++|..-|||. .+.+.+++.+|||.+=+||+++.
T Consensus 250 ~~--~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 250 ET--RGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred cc--CCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence 21 147888899998 88999999999999999999885
No 207
>PRK07094 biotin synthase; Provisional
Probab=97.36 E-value=0.0045 Score=57.92 Aligned_cols=177 Identities=19% Similarity=0.222 Sum_probs=103.7
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccc--ccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN--ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn--~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
+...+.++++.+.+.|++.+.+ ..|. .|. ...=.++++.|++.++..+.+++-..+ .+.++.+.++|++.+.+.
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l--~gG~-~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~~~-~e~l~~Lk~aG~~~v~~g 146 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVL--QSGE-DPYYTDEKIADIIKEIKKELDVAITLSLGERS-YEEYKAWKEAGADRYLLR 146 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE--ecCC-CCCCCHHHHHHHHHHHHccCCceEEEecCCCC-HHHHHHHHHcCCCEEEec
Confidence 3445566677777889988765 4442 121 122234566666644443333332223 347788999999999998
Q ss_pred ccccc------------cccHHHHHHHHHHcCCcEEE--EEC-CCCCHHHHHHhhc-----cCCEEEEEee--cCCCC--
Q 023494 146 CEQSS------------TIHLHRTLNQIKDLGAKAGV--VLN-PATSLSAIECVLD-----VVDLVLIMSV--NPGFG-- 201 (281)
Q Consensus 146 ~Ea~~------------~~~i~~~l~~ik~~G~k~Gl--ai~-p~t~ie~~~~~l~-----~vD~IlvmsV--~pG~~-- 201 (281)
.|+.+ .++..+.++.+++.|+.++. .+. |....+.+.+.+. .+|.+.++.. .||..
T Consensus 147 lEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~ 226 (323)
T PRK07094 147 HETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLK 226 (323)
T ss_pred cccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcc
Confidence 88631 12355677888899987653 444 4555555444332 2577666544 45532
Q ss_pred CCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecC---CChhcHHHHHHcCCcEEE
Q 023494 202 GQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGG---VGPKNAYKVIEAGANALV 252 (281)
Q Consensus 202 GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG---I~~e~i~~~~~aGAD~~V 252 (281)
... -....++.+..+|-+++.. .|...+| +.++-....+.+|||.+.
T Consensus 227 ~~~~~~~~~~~~~~a~~R~~lp~~----~i~~~~~~~~~~~~~~~~~l~~Gan~~~ 278 (323)
T PRK07094 227 DEKGGSLELTLKVLALLRLLLPDA----NIPATTALGTLNPDGREKGLKAGANVVM 278 (323)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcCC----CCcccCCccccCchhHHHHHHcCCceec
Confidence 111 1244466777777777642 3433444 445555678999999775
No 208
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.35 E-value=0.0045 Score=59.20 Aligned_cols=150 Identities=17% Similarity=0.139 Sum_probs=93.0
Q ss_pred HHHHcCcC-CCCCeeEEEEecCh-----hhHHHHHHHcCCCEEEEcccc----c---ccccHH---HHHHHHHHc-CCcE
Q 023494 106 VVDALRPV-TDLPLDVHLMIVEP-----EQRVPDFIKAGADIVSVHCEQ----S---STIHLH---RTLNQIKDL-GAKA 168 (281)
Q Consensus 106 ~I~~ir~~-t~~~idaHLmv~dp-----~~~i~~~~~aGAd~Itvh~Ea----~---~~~~i~---~~l~~ik~~-G~k~ 168 (281)
..+.+|+. ++.|+.+-|-+..+ +...+....++||.+-+|... . ...+.. +.++.+++. ++.+
T Consensus 110 ~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPV 189 (352)
T PRK05437 110 SFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPV 189 (352)
T ss_pred HHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCE
Confidence 34455665 47888886666433 444444456789999999632 0 112344 677777775 7777
Q ss_pred EEEECC-CCCHHHHHHhhc-cCCEEEEEeecCCCC--------C-C--------ccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 169 GVVLNP-ATSLSAIECVLD-VVDLVLIMSVNPGFG--------G-Q--------SFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 169 Glai~p-~t~ie~~~~~l~-~vD~IlvmsV~pG~~--------G-Q--------~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
++=... .+..+..+.+.+ .+|.|.+-+ ..|.. + + .|-..+.+-|.++++.. .+++|
T Consensus 190 ivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg-~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~----~~ipv 264 (352)
T PRK05437 190 IVKEVGFGISKETAKRLADAGVKAIDVAG-AGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL----PDLPI 264 (352)
T ss_pred EEEeCCCCCcHHHHHHHHHcCCCEEEECC-CCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc----CCCeE
Confidence 764432 355666666655 489998732 22211 0 0 01111334454444432 24789
Q ss_pred EEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.++|||. ...+.+++.+|||.+-+|++++.+
T Consensus 265 ia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 265 IASGGIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 9999999 779999999999999999998754
No 209
>PRK08508 biotin synthase; Provisional
Probab=97.34 E-value=0.026 Score=52.17 Aligned_cols=197 Identities=19% Similarity=0.231 Sum_probs=113.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccc--ccCCHHHHHHcCcCCCCCeeEEEEecCh---hhHHHHHHHcCCCEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN--ITIGPLVVDALRPVTDLPLDVHLMIVEP---EQRVPDFIKAGADIV 142 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn--~~~G~~~I~~ir~~t~~~idaHLmv~dp---~~~i~~~~~aGAd~I 142 (281)
++.++.+.++.+.+.|+..+++ +-.|...+. +.+=.++++.||+.. .++++...+. .+.++.+.++|+|.+
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~l-v~sg~~~~~~~~e~~~ei~~~ik~~~---p~l~i~~s~G~~~~e~l~~Lk~aGld~~ 116 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCL-VTSGRGLDDKKLEYVAEAAKAVKKEV---PGLHLIACNGTASVEQLKELKKAGIFSY 116 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE-EeccCCCCcccHHHHHHHHHHHHhhC---CCcEEEecCCCCCHHHHHHHHHcCCCEE
Confidence 4456666666666788988877 334432221 222345666777542 1333333222 236778899999999
Q ss_pred EEccccc--------ccccHH---HHHHHHHHcCCcE--EEEECCCCCHHHHHHhhc-----cCCEEEEEeecC--CCC-
Q 023494 143 SVHCEQS--------STIHLH---RTLNQIKDLGAKA--GVVLNPATSLSAIECVLD-----VVDLVLIMSVNP--GFG- 201 (281)
Q Consensus 143 tvh~Ea~--------~~~~i~---~~l~~ik~~G~k~--Glai~p~t~ie~~~~~l~-----~vD~IlvmsV~p--G~~- 201 (281)
..-.|.. +..++. ++++.+++.|+++ |+.+..+...+...+.+. .+|.|-+.-.+| |..
T Consensus 117 ~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~ 196 (279)
T PRK08508 117 NHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPALPL 196 (279)
T ss_pred cccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCC
Confidence 9765542 112233 4777789999877 455555555544444332 256554433333 332
Q ss_pred -CCccch-hHHHHHHHHHHHhhhcCCCCeEEEecCCC---hhcHHHHHHcCCcEEEEcccccCC-CCHHHHHHHHHH
Q 023494 202 -GQSFIE-SQVKKISDLRRMCLEKGVNPWIEVDGGVG---PKNAYKVIEAGANALVAGSAVFGA-KDYAEAIKGIKT 272 (281)
Q Consensus 202 -GQ~f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~---~e~i~~~~~aGAD~~VvGSaIf~a-~dp~~~~~~l~~ 272 (281)
..+..+ +.+.-+.-.|-+++ +..|-+.||-. .+.-..+..+|||.+++|-+++.. .++++-.+-+++
T Consensus 197 ~~~~~~~~~~lr~iAv~Rl~lp----~~~i~~~~gr~~~~~~~~~~~~~~g~n~~~~g~~lt~~g~~~~~d~~~~~~ 269 (279)
T PRK08508 197 KAPTLSADEALEIVRLAKEALP----NARLMVAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEAPKKDIEKLKS 269 (279)
T ss_pred CCCCCCHHHHHHHHHHHHHHCC----CceeeecCChhhhchhhHHHHHhcCCcceeecCcccCCCCChHHHHHHHHH
Confidence 122222 33444555555554 35688899873 234557889999999999999865 455555555544
No 210
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.34 E-value=0.0051 Score=58.84 Aligned_cols=181 Identities=19% Similarity=0.264 Sum_probs=102.6
Q ss_pred Cc-cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-------C--CCCeeEEEEecC-hhhHHHHHHH
Q 023494 68 NF-AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-------T--DLPLDVHLMIVE-PEQRVPDFIK 136 (281)
Q Consensus 68 D~-~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-------t--~~~idaHLmv~d-p~~~i~~~~~ 136 (281)
|. .+.+=++...+..|+-.||- +.. +..-.+.++.+|+. . ...+-+-+-+.+ -.+.++.+.+
T Consensus 46 DtVte~~mAiama~~Gglgvih~-----~~~--~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~ 118 (352)
T PF00478_consen 46 DTVTESEMAIAMARLGGLGVIHR-----NMS--IEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVE 118 (352)
T ss_dssp TTTSSHHHHHHHHHTTSEEEEES-----SSC--HHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHhcCCceecC-----CCC--HHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHH
Confidence 53 35555555566667766764 211 12223445555432 1 233444444433 2345778899
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE-ECCCCCHHHHHHhhc-cCCEEEEEeecCCCCC--Cc----cchh
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNPATSLSAIECVLD-VVDLVLIMSVNPGFGG--QS----FIES 208 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla-i~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~G--Q~----f~~~ 208 (281)
+|+|.+.+.......++..+.++.+|+.--++-|. =|-.| .+-.+.+++ .+|.|-+ .+=||--= +. -.|
T Consensus 119 agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T-~e~a~~L~~aGad~vkV-GiGpGsiCtTr~v~GvG~P- 195 (352)
T PF00478_consen 119 AGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVT-YEGAKDLIDAGADAVKV-GIGPGSICTTREVTGVGVP- 195 (352)
T ss_dssp TT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-S-HHHHHHHHHTT-SEEEE-SSSSSTTBHHHHHHSBSCT-
T ss_pred cCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCC-HHHHHHHHHcCCCEEEE-eccCCcccccccccccCCc-
Confidence 99999999654433456777888888764444443 34333 445556655 4899876 33333200 00 122
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+.-|.+..+...+ ++.+|..||||+ ..++-+.+.+|||.+-+||.+-+.
T Consensus 196 Q~tAv~~~a~~a~~--~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt 246 (352)
T PF00478_consen 196 QLTAVYECAEAARD--YGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGT 246 (352)
T ss_dssp HHHHHHHHHHHHHC--TTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTB
T ss_pred HHHHHHHHHHHhhh--ccCceeecCCcCcccceeeeeeecccceeechhhccC
Confidence 23334444554433 468999999999 779999999999999999988764
No 211
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=97.33 E-value=0.00086 Score=62.21 Aligned_cols=167 Identities=26% Similarity=0.307 Sum_probs=100.6
Q ss_pred CceEeEEEeccC---ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC------CHH----HHHHcCcCCCCCeeEEEE
Q 023494 57 DIIVSPSILSAN---FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI------GPL----VVDALRPVTDLPLDVHLM 123 (281)
Q Consensus 57 ~~~i~pSila~D---~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~------G~~----~I~~ir~~t~~~idaHLm 123 (281)
.+-+..|+.+.. ..++.+.++.++ .|+|.+++.+ ..||... .++ +++.+|+.+++|+.+-|-
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~----ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~ 170 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNL----SCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLS 170 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEES----TSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEe----eccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEec
Confidence 467888998887 555555556666 6799999963 2344421 223 333445556788888554
Q ss_pred ec--Chhh--HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC
Q 023494 124 IV--EPEQ--RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG 199 (281)
Q Consensus 124 v~--dp~~--~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG 199 (281)
-+ +... ....+.+.|++.|+.--- ...+..+++++.- ++... ..-|
T Consensus 171 p~~~~~~~~~~~~~~~~~g~~gi~~~Nt------------------~~~~~~id~~~~~----~~~~~--------~~gG 220 (295)
T PF01180_consen 171 PNFTDIEPFAIAAELAADGADGIVAINT------------------FGQGDAIDLETRR----PVLGN--------GFGG 220 (295)
T ss_dssp STSSCHHHHHHHHHHHTHTECEEEE---------------------EEEEE-EETTTTE----ESSSG--------GEEE
T ss_pred CCCCchHHHHHHHHhhccceeEEEEecC------------------ccCcccccchhcc----eeecc--------ccCC
Confidence 42 3221 233344667777663210 0111223332211 11110 1113
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccc-cCCC
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAV-FGAK 261 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaI-f~a~ 261 (281)
.+|....|..+..++++++..++ +++|..-|||. .+.+.+++.+|||.+=++|++ ++..
T Consensus 221 lSG~~i~p~aL~~V~~~~~~~~~---~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp 281 (295)
T PF01180_consen 221 LSGPAIRPIALRWVRELRKALGQ---DIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGP 281 (295)
T ss_dssp EEEGGGHHHHHHHHHHHHHHTTT---SSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGT
T ss_pred cCchhhhhHHHHHHHHHHhcccc---ceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCc
Confidence 56778889999999999988753 48999999998 889999999999999999998 5433
No 212
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.33 E-value=0.0014 Score=61.18 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 153 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 153 ~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
.+.+.++.+|+..-..-+.+... .++.+++.++ .+|.|++ + .|.|+.+.+ +.++++. ++.+++
T Consensus 191 ~i~~av~~~r~~~~~~kIeVEve-tleea~eA~~aGaDiImL-------D--nmspe~l~~---av~~~~~---~~~lEa 254 (294)
T PRK06978 191 GVGAALDAAFALNAGVPVQIEVE-TLAQLETALAHGAQSVLL-------D--NFTLDMMRE---AVRVTAG---RAVLEV 254 (294)
T ss_pred CHHHHHHHHHHhCCCCcEEEEcC-CHHHHHHHHHcCCCEEEE-------C--CCCHHHHHH---HHHhhcC---CeEEEE
Confidence 36678888887642112444434 3666666666 4999986 2 355655544 4444432 478999
Q ss_pred ecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 232 DGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 232 DGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
.||||++|+.++.+.|+|++++|+-..++.
T Consensus 255 SGGIt~~ni~~yA~tGVD~IS~galthsa~ 284 (294)
T PRK06978 255 SGGVNFDTVRAFAETGVDRISIGALTKDVR 284 (294)
T ss_pred ECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence 999999999999999999999998766653
No 213
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.0054 Score=57.71 Aligned_cols=186 Identities=19% Similarity=0.271 Sum_probs=111.6
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcC-CCeEEEEeeeCcccccc-cCC--HH----HHHHcCcCCCCCeeEEEEecChhh
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAG-CDWIHVDVMDGRFVPNI-TIG--PL----VVDALRPVTDLPLDVHLMIVEPEQ 129 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G-~d~iHiDImDG~fvpn~-~~G--~~----~I~~ir~~t~~~idaHLmv~dp~~ 129 (281)
+.|..|..........+.+..+++.+ +|++++-|-=-| +|.. .++ ++ +++++|+.+++|+-+-|== |
T Consensus 97 ~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPn-t~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P-~--- 171 (310)
T COG0167 97 VNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPN-TPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAP-N--- 171 (310)
T ss_pred cceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCC-CCChhhhccCHHHHHHHHHHHHhcccCceEEEeCC-C---
Confidence 34777777766677888888888888 899999643322 2221 233 22 3344455566777663321 1
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhH
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
..++.+..+.+.++|...-+++|...+-..+.. ... ....-.-+-|.+|....|..
T Consensus 172 ---------------------~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~--~~~-~~~~~~~~GGLSG~~ikp~a 227 (310)
T COG0167 172 ---------------------ITDIDEIAKAAEEAGADGLIAINTTKSGMKIDL--ETK-KPVLANETGGLSGPPLKPIA 227 (310)
T ss_pred ---------------------HHHHHHHHHHHHHcCCcEEEEEeeccccccccc--ccc-ccccCcCCCCcCcccchHHH
Confidence 123444445555555555555543221110000 000 00000112366888888999
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CC-HHHHHHHHHHhcC
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KD-YAEAIKGIKTSKR 275 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~d-p~~~~~~l~~~~~ 275 (281)
++-|+++++.... +++|.--|||. .+++-+.+.+||+.+=+||+++.. .. ..+..+.|.+.++
T Consensus 228 l~~v~~l~~~~~~---~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~ 293 (310)
T COG0167 228 LRVVAELYKRLGG---DIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLE 293 (310)
T ss_pred HHHHHHHHHhcCC---CCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHH
Confidence 9888888877643 58888899998 788999999999999999998854 33 3444455555444
No 214
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=97.32 E-value=0.00093 Score=61.96 Aligned_cols=155 Identities=15% Similarity=0.090 Sum_probs=94.5
Q ss_pred cCCHH-------HHHHcCcCCCCCeeEEEEecChh----hHHHHHH--HcCCCEEEEcccccccccHHHHHHHHHHcCCc
Q 023494 101 TIGPL-------VVDALRPVTDLPLDVHLMIVEPE----QRVPDFI--KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK 167 (281)
Q Consensus 101 ~~G~~-------~I~~ir~~t~~~idaHLmv~dp~----~~i~~~~--~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k 167 (281)
.+|++ +++++|+. ++++.+|+|..|.. .|.+.++ +.|+|.+|+|.-.. .+.+..+++..++.|..
T Consensus 66 ~~G~~G~~~l~~~i~~l~~~-g~~VilD~K~~DI~nTv~~ya~a~~~~~~g~DavTVhp~~G-~d~l~~~~~~~~~~~k~ 143 (278)
T PRK00125 66 AHGAEGLAQLERTIAYLREA-GVLVIADAKRGDIGSTAEAYAKAAFESPLEADAVTVSPYMG-FDSLEPYLEYAEEHGKG 143 (278)
T ss_pred hcCchhhhHHHHHHHHHHHC-CCcEEEEeecCChHHHHHHHHHHHhcCccCCcEEEECCcCC-HHHHHHHHHHHHhcCCE
Confidence 67887 78888875 68999999999985 4777777 68999999998643 56678888888888887
Q ss_pred EEEEECCCCCH-HHHHHhhc--c---CCEEE----EEee----cCCCCCCccchhH-HHHHHHHHHHhhhcCCCCeEEEe
Q 023494 168 AGVVLNPATSL-SAIECVLD--V---VDLVL----IMSV----NPGFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 168 ~Glai~p~t~i-e~~~~~l~--~---vD~Il----vmsV----~pG~~GQ~f~~~~-l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
+++....+.|- ..++.+.. . .+.|. ...- .+|..|- -...+ .+.++++|+.++ +++ -+-
T Consensus 144 vfVlvlTSnp~s~~lq~~~~~~~~~l~~~V~~~a~~~~~~~~~~~g~~G~-VVgaT~p~e~~~iR~~~~----~~~-iL~ 217 (278)
T PRK00125 144 VFVLCRTSNPGGSDLQFLRTADGRPLYQHVADLAAALNNLGNCGYGSIGL-VVGATFPPELAAVRKILG----GMP-LLI 217 (278)
T ss_pred EEEEEeCCCCCHHHHHhhhccCCCcHHHHHHHHHHHHhccccCCCCCCEE-EECCCCHHHHHHHHHhCC----CCe-EEe
Confidence 77766444444 33332210 0 11111 0000 1343330 11222 344666666653 234 478
Q ss_pred cCCChh--cHHHHHHcCCc----EE-EEcccccCCCCH
Q 023494 233 GGVGPK--NAYKVIEAGAN----AL-VAGSAVFGAKDY 263 (281)
Q Consensus 233 GGI~~e--~i~~~~~aGAD----~~-VvGSaIf~a~dp 263 (281)
.||.++ ++..++++|++ ++ -+.++|..+.+.
T Consensus 218 PGigaQGg~~~~~~~~~~~~~~~~l~~~SR~il~a~~~ 255 (278)
T PRK00125 218 PGIGAQGGDAEATVRAGGAAGNGGIPNSSRAILYAGPG 255 (278)
T ss_pred CCcCCCCcCHHHHHHHhhhcCCCEEeecCHHHHcCCCc
Confidence 999855 46777777665 33 334667665444
No 215
>PRK14565 triosephosphate isomerase; Provisional
Probab=97.31 E-value=0.0047 Score=56.03 Aligned_cols=135 Identities=13% Similarity=0.159 Sum_probs=83.2
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCCCH-----------HHHHHhhccCCEEEE
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSL-----------SAIECVLDVVDLVLI 193 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-----------e~~~~~l~~vD~Ilv 193 (281)
.+++.++|++++.+. .|- .+.+.+.+=++.+.++|+++.+-+.-.... ..+...++..+- ++
T Consensus 78 ~~mLkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~~~~-iv 156 (237)
T PRK14565 78 AKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPKHGE-FI 156 (237)
T ss_pred HHHHHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcCCCC-EE
Confidence 578899999998875 221 023344444578889999988877532111 011122222211 22
Q ss_pred EeecCCC---CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEEcccccCCCCHHHHHHH
Q 023494 194 MSVNPGF---GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVFGAKDYAEAIKG 269 (281)
Q Consensus 194 msV~pG~---~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~VvGSaIf~a~dp~~~~~~ 269 (281)
..-+|-+ +|+.-.|+- +++..+.+++...+.+|.-.|+|+++|+.++.+. ++|++-+|++..+.+++.+.++.
T Consensus 157 IAYEPvWAIGtG~~a~~e~---i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ii~~ 233 (237)
T PRK14565 157 IAYEPVWAIGGSTIPSNDA---IAEAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCKIIQQ 233 (237)
T ss_pred EEECCHHHhCCCCCCCHHH---HHHHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhcHHHHHHHHHH
Confidence 3346632 355444443 3444444433233578889999999999998765 89999999999987777666554
No 216
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=97.30 E-value=0.019 Score=54.72 Aligned_cols=172 Identities=18% Similarity=0.245 Sum_probs=108.0
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeC----cccccc-cC-CHHHHHHcCcC-CCCCeeEEEEe--cChhhHHHHHHHcCCC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDG----RFVPNI-TI-GPLVVDALRPV-TDLPLDVHLMI--VEPEQRVPDFIKAGAD 140 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG----~fvpn~-~~-G~~~I~~ir~~-t~~~idaHLmv--~dp~~~i~~~~~aGAd 140 (281)
....+.++.|.++|++.|++---|| .|...+ .+ ..+.++.+++. ++..+-+.+.- .+. +.++.+.++|+|
T Consensus 25 ~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~-~dl~~a~~~gvd 103 (337)
T PRK08195 25 EQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTV-DDLKMAYDAGVR 103 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccH-HHHHHHHHcCCC
Confidence 3455667888899999998843332 221111 11 24667777543 44455543321 122 457888999999
Q ss_pred EEE--EcccccccccHHHHHHHHHHcCCcEEEEE--CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHHH
Q 023494 141 IVS--VHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVK 211 (281)
Q Consensus 141 ~It--vh~Ea~~~~~i~~~l~~ik~~G~k~Glai--~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~ 211 (281)
.|- +|... .+...+.++.+|+.|+++.+.+ .+.++.+.+.++++. +|.|.+. -..|.....++.+
T Consensus 104 ~iri~~~~~e--~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~----DT~G~~~P~~v~~ 177 (337)
T PRK08195 104 VVRVATHCTE--ADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV----DSAGALLPEDVRD 177 (337)
T ss_pred EEEEEEecch--HHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC----CCCCCCCHHHHHH
Confidence 855 55542 3557889999999999887644 444566665555442 6777552 2345545555667
Q ss_pred HHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 212 KISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
.++.+++.++ .+++|.+ +-|....|.-..+++||+.+
T Consensus 178 ~v~~l~~~l~---~~i~ig~H~HnnlGla~ANslaAi~aGa~~i 218 (337)
T PRK08195 178 RVRALRAALK---PDTQVGFHGHNNLGLGVANSLAAVEAGATRI 218 (337)
T ss_pred HHHHHHHhcC---CCCeEEEEeCCCcchHHHHHHHHHHhCCCEE
Confidence 7777776652 2356665 66777778889999999954
No 217
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.29 E-value=0.001 Score=60.36 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=57.9
Q ss_pred CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 175 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 175 ~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
..|++..+.|.+ .+|.+.+.-.+....|..-+...+ +++.+.. .+++|+|||+ .+.++.+.++|||-+|
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i---~~i~~~~------~~v~vGGGIrs~e~~~~~l~~Ga~rvv 100 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVL---EKLSEFA------EHIQIGGGIRSLDYAEKLRKLGYRRQI 100 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHH---HHHHhhc------CcEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 467777777765 378888877776555655444444 4443332 3799999999 7999999999999999
Q ss_pred EcccccCCCC
Q 023494 253 AGSAVFGAKD 262 (281)
Q Consensus 253 vGSaIf~a~d 262 (281)
+||..++.++
T Consensus 101 igT~a~~~p~ 110 (241)
T PRK14114 101 VSSKVLEDPS 110 (241)
T ss_pred ECchhhCCHH
Confidence 9999987543
No 218
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=97.27 E-value=0.0025 Score=58.82 Aligned_cols=94 Identities=14% Similarity=0.272 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEE
Q 023494 153 HLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (281)
Q Consensus 153 ~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~ 230 (281)
.+.+.++.+|+. +-..-+.+..++ ++.+++.++ .+|.|++ +. |.|+.++ ++.+++. .+.+..++
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEves-le~~~eAl~agaDiImL-------DN--m~~e~~~---~av~~l~-~~~~~~lE 238 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVES-LEEAEEALEAGADIIML-------DN--MSPEELK---EAVKLLG-LAGRALLE 238 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCC-HHHHHHHHHcCCCEEEe-------cC--CCHHHHH---HHHHHhc-cCCceEEE
Confidence 477888888876 322334444444 444555554 5999986 23 6565544 4444432 22357899
Q ss_pred EecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 231 VDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 231 VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+-||||++|++.+.+.|+|.+.+|.-..++
T Consensus 239 aSGgIt~~ni~~yA~tGVD~IS~galths~ 268 (280)
T COG0157 239 ASGGITLENIREYAETGVDVISVGALTHSA 268 (280)
T ss_pred EeCCCCHHHHHHHhhcCCCEEEeCccccCC
Confidence 999999999999999999999998654443
No 219
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=97.27 E-value=0.024 Score=53.93 Aligned_cols=174 Identities=19% Similarity=0.198 Sum_probs=107.0
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeC----cccccc-cC-CHHHHHHcCcC-CCCCeeEEEEe--cChhhHHHHHHHcCCC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDG----RFVPNI-TI-GPLVVDALRPV-TDLPLDVHLMI--VEPEQRVPDFIKAGAD 140 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG----~fvpn~-~~-G~~~I~~ir~~-t~~~idaHLmv--~dp~~~i~~~~~aGAd 140 (281)
.+..+.++.|.++|+++|++---|| .|...+ .+ ..+.++++++. .+..+-+.+.- .+ .+.++.+.++|+|
T Consensus 24 ~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~-~~dl~~a~~~gvd 102 (333)
T TIGR03217 24 EQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGT-VHDLKAAYDAGAR 102 (333)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccC-HHHHHHHHHCCCC
Confidence 3556677888999999998843333 222111 11 23556666543 33334332211 12 2457888999999
Q ss_pred EEEEcccccccccHHHHHHHHHHcCCcEEEEE--CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHHHHH
Q 023494 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 141 ~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai--~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
.|.+-......+...+.++.+|+.|.++...+ .+.++.+.+.++.+. +|.|.+. -..|.....++.+.+
T Consensus 103 ~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~----DT~G~~~P~~v~~~v 178 (333)
T TIGR03217 103 TVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIV----DSAGAMLPDDVRDRV 178 (333)
T ss_pred EEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEc----cCCCCCCHHHHHHHH
Confidence 88754332123457889999999999987654 444566666555442 6767553 234554555566777
Q ss_pred HHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 214 SDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
+.+++.++ .+++|.+ +=|....|.-..+++||+.+
T Consensus 179 ~~l~~~l~---~~i~ig~H~HnnlGla~ANslaAi~aGa~~i 217 (333)
T TIGR03217 179 RALKAVLK---PETQVGFHAHHNLSLAVANSIAAIEAGATRI 217 (333)
T ss_pred HHHHHhCC---CCceEEEEeCCCCchHHHHHHHHHHhCCCEE
Confidence 77776653 1356766 55666668888999999974
No 220
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.25 E-value=0.0022 Score=59.79 Aligned_cols=90 Identities=16% Similarity=0.244 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHcC---CcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 153 HLHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 153 ~i~~~l~~ik~~G---~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
.+.+.++.+|+.. .|+-+-. . .++++.+.++. +|.|++ .+|.|+.+.+ +.+++++ +..
T Consensus 182 ~i~~av~~~r~~~~~~~kIeVEv--~-tleea~~a~~agaDiImL---------Dnmspe~l~~---av~~~~~---~~~ 243 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEVEV--E-SLAAAEEAAAAGADIIML---------DNMSLEQIEQ---AITLIAG---RSR 243 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEEEC--C-CHHHHHHHHHcCCCEEEE---------CCCCHHHHHH---HHHHhcC---ceE
Confidence 4667888888763 4555544 3 55667776664 999986 2366665544 4444433 478
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+++.||||++|++++.+.|+|++++|+-..++
T Consensus 244 leaSGGI~~~ni~~yA~tGVD~Is~galthsa 275 (290)
T PRK06559 244 IECSGNIDMTTISRFRGLAIDYVSSGSLTHSA 275 (290)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 99999999999999999999999999865544
No 221
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.24 E-value=0.001 Score=60.06 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=57.3
Q ss_pred CCCHHHHHHhhc-c-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 175 ATSLSAIECVLD-V-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 175 ~t~ie~~~~~l~-~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
.+|++..+.|.+ . +|.+.+.-.+.-..|+.-+ ++-|+++.+.. +.+|+++|||+ .|.++.+.++||+-+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n---~~~I~~i~~~~-----~~pi~vGGGIrs~e~v~~~l~~Ga~kv 102 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHARE---FDYIKSLRRLT-----TKDIEVGGGIRTKSQIMDYFAAGINYC 102 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcch---HHHHHHHHhhc-----CCeEEEcCCcCCHHHHHHHHHCCCCEE
Confidence 467777777766 3 7988887665433454433 33444444432 36899999999 899999999999999
Q ss_pred EEcccccCCC
Q 023494 252 VAGSAVFGAK 261 (281)
Q Consensus 252 VvGSaIf~a~ 261 (281)
|+||+-++..
T Consensus 103 vigt~a~~~~ 112 (234)
T PRK13587 103 IVGTKGIQDT 112 (234)
T ss_pred EECchHhcCH
Confidence 9999988643
No 222
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=97.22 E-value=0.037 Score=56.73 Aligned_cols=175 Identities=15% Similarity=0.096 Sum_probs=104.5
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHH-HHHcCcC-CC-CCeeEEEEec-ChhhHHHHHHHcCCCEEEEcc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLV-VDALRPV-TD-LPLDVHLMIV-EPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~-I~~ir~~-t~-~~idaHLmv~-dp~~~i~~~~~aGAd~Itvh~ 146 (281)
.+.++.+.+.|+|++=+ .|.|+- ...++. .++|.+. +. ..--|=+.++ ++....+.+.+.+.|.|-+|.
T Consensus 13 ~eda~~a~~~gaD~iGf-----If~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG 87 (610)
T PRK13803 13 SALISKAVDMLPDFIGF-----IFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHG 87 (610)
T ss_pred HHHHHHHHHcCCCEEEE-----EecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 34566777899998744 233432 245666 5555432 21 1112334555 444455666789999999998
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHhhccCCEEEEEeecCCC--CCCccchhHHHHHHHHHHHhhh
Q 023494 147 EQSSTIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDVVDLVLIMSVNPGF--GGQSFIESQVKKISDLRRMCLE 222 (281)
Q Consensus 147 Ea~~~~~i~~~l~~ik~~G~k~Glai~p~--t~ie~~~~~l~~vD~IlvmsV~pG~--~GQ~f~~~~l~kI~~lr~l~~~ 222 (281)
.. .....+.++.+++.++++.-++... ..++.+.++.+.+|++++=+-.|++ +|+.|.-..+. .+.
T Consensus 88 ~e--~~~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~fdw~~~~------~~~-- 157 (610)
T PRK13803 88 AE--SKAEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGSGKSFDWEKFY------NYN-- 157 (610)
T ss_pred CC--CcccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCCCCCCCCCccChHHhh------hcc--
Confidence 64 1112456777777777776555443 3355566666668999886544443 46777654432 111
Q ss_pred cCCCCeEEEecCCChhcHHHHHHc-CCc--EEEEcccccCC---CCHH
Q 023494 223 KGVNPWIEVDGGVGPKNAYKVIEA-GAN--ALVAGSAVFGA---KDYA 264 (281)
Q Consensus 223 ~~~~~~I~VDGGI~~e~i~~~~~a-GAD--~~VvGSaIf~a---~dp~ 264 (281)
...++.+.|||+++|+.++++. .+. .+=+-|.+=.. .|++
T Consensus 158 --~~~p~iLAGGL~peNV~~ai~~~~p~~~gVDvsSGvE~~pG~KD~~ 203 (610)
T PRK13803 158 --FKFPFFLSGGLSPTNFDRIINLTHPQILGIDVSSGFEDSPGNKKLT 203 (610)
T ss_pred --cCCcEEEEeCCCHHHHHHHHhhhCCCceEEEccCcccCCCCCcCHH
Confidence 1235778999999999998873 344 45455666532 5664
No 223
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.22 E-value=0.0021 Score=57.94 Aligned_cols=188 Identities=16% Similarity=0.163 Sum_probs=105.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChh--------hHHHHHHHc-
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPE--------QRVPDFIKA- 137 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~--------~~i~~~~~a- 137 (281)
-+.+.+...+.++..|++.+-+=+---. +.- .-+..+.+.|+. ..+|++-+..+ +..++..++
T Consensus 17 ky~s~~~m~~ai~aSg~evvTvalRR~~--~~~~~~~~~~~~~i~~-----~~~~lLPNTaGc~tA~EAv~~A~laRe~~ 89 (247)
T PF05690_consen 17 KYPSPEVMREAIEASGAEVVTVALRRVN--LGSKPGGDNILDYIDR-----SGYTLLPNTAGCRTAEEAVRTARLAREAF 89 (247)
T ss_dssp TSSSHHHHHHHHHHTT-SEEEEECCGST--TTS-TTCHHCCCCTTC-----CTSEEEEE-TT-SSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCcEEEEEEeccc--CCCCCCCccHHHHhcc-----cCCEECCcCCCCCCHHHHHHHHHHHHHHc
Confidence 3445666666777889998766433211 101 113333333332 35777877654 223445565
Q ss_pred CCCEEEEcccccc---cccHHHHHHHHH---HcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc-chhH
Q 023494 138 GADIVSVHCEQSS---TIHLHRTLNQIK---DLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQ 209 (281)
Q Consensus 138 GAd~Itvh~Ea~~---~~~i~~~l~~ik---~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f-~~~~ 209 (281)
|-|||-+-.-..+ .+++.+++++.+ +.|..+---++++ .-..+.+.+ .+..|+-+....|. ||-. .+..
T Consensus 90 ~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D--~v~akrL~d~GcaavMPlgsPIGS-g~Gi~n~~~ 166 (247)
T PF05690_consen 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDD--PVLAKRLEDAGCAAVMPLGSPIGS-GRGIQNPYN 166 (247)
T ss_dssp S-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEBEEBSSSTTT----SSTHHH
T ss_pred CCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCC--HHHHHHHHHCCCCEEEeccccccc-CcCCCCHHH
Confidence 6789876644211 245667776665 5577777667643 222333333 25556555555564 4433 3443
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
|+.+++.. ++++.||+||. +.++.+..+.|+|.+-+-|+|..+.||...++.|+..
T Consensus 167 ---l~~i~~~~-----~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~A 223 (247)
T PF05690_consen 167 ---LRIIIERA-----DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLA 223 (247)
T ss_dssp ---HHHHHHHG-----SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred ---HHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHH
Confidence 44445443 47899999999 8899999999999999999999999999999988864
No 224
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=97.22 E-value=0.022 Score=51.90 Aligned_cols=169 Identities=20% Similarity=0.174 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH-HHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP-LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~-~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
...+.++.|.++|++.|++ | .|...-.. +.++.+++. ++..+.++.. .++ +.++.+.++|++.|.+..-.
T Consensus 21 ~k~~i~~~L~~~Gv~~iE~----g--~p~~~~~~~e~~~~l~~~~~~~~~~~~~r-~~~-~~v~~a~~~g~~~i~i~~~~ 92 (259)
T cd07939 21 EKLAIARALDEAGVDEIEV----G--IPAMGEEEREAIRAIVALGLPARLIVWCR-AVK-EDIEAALRCGVTAVHISIPV 92 (259)
T ss_pred HHHHHHHHHHHcCCCEEEE----e--cCCCCHHHHHHHHHHHhcCCCCEEEEecc-CCH-HHHHHHHhCCcCEEEEEEec
Confidence 4446677888999999888 3 35543333 567777653 3334443311 232 35788899999998887532
Q ss_pred cc--------------cccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccch
Q 023494 149 SS--------------TIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 149 ~~--------------~~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~ 207 (281)
.. .+.+.+.++.+|+.|..+.+.+. ..++.+.+.++... +|.|.+ +-..|.....
T Consensus 93 s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l----~DT~G~~~P~ 168 (259)
T cd07939 93 SDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRF----ADTVGILDPF 168 (259)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEe----CCCCCCCCHH
Confidence 10 12345788899999998765442 33556666665543 666654 2334544445
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
++.+.++.+++..+ .+|++ |=|....|.-..+++|++.+ =+++.
T Consensus 169 ~v~~lv~~l~~~~~-----~~l~~H~Hn~~Gla~An~laAi~aG~~~v--d~s~~ 216 (259)
T cd07939 169 TTYELIRRLRAATD-----LPLEFHAHNDLGLATANTLAAVRAGATHV--SVTVN 216 (259)
T ss_pred HHHHHHHHHHHhcC-----CeEEEEecCCCChHHHHHHHHHHhCCCEE--EEecc
Confidence 55566666665432 45665 66777778888999999975 44444
No 225
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=97.21 E-value=0.0039 Score=55.65 Aligned_cols=197 Identities=23% Similarity=0.231 Sum_probs=120.7
Q ss_pred EeEE--EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCC--CC---eeEEEEecChhhHHH
Q 023494 60 VSPS--ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD--LP---LDVHLMIVEPEQRVP 132 (281)
Q Consensus 60 i~pS--ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~--~~---idaHLmv~dp~~~i~ 132 (281)
-||| +++.|+.-- ++.....++|+..|-+ .-|-+|- -=+.+-+..+|+..+ .| +...=.+-||....
T Consensus 80 ASPSkG~ik~d~~~a-e~A~~Yak~GAs~iSV-LTe~k~F---kGsledL~~irk~~~~k~p~~~lL~KeFivd~~QI~- 153 (289)
T KOG4201|consen 80 ASPSKGIIKLDANAA-EQALAYAKGGASCISV-LTEPKWF---KGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQIY- 153 (289)
T ss_pred cCCCCCccccccCHH-HHHHHHHhcCceeeee-ecCchhh---cccHHHHHHHHHHhcCcCChHhHhHHHHccCHHHHH-
Confidence 4554 678887544 4445667788887755 3333332 224445555564322 22 33333455665432
Q ss_pred HHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHH
Q 023494 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 212 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~k 212 (281)
...-.|||.|.+-....+...++.+.+..|+.|+..-+.+|......+..++ .+.+|- |+-- .=..|. -.+..
T Consensus 154 ~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~ralei--GakvvG---vNNR-nL~sFe-VDlst 226 (289)
T KOG4201|consen 154 EARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEI--GAKVVG---VNNR-NLHSFE-VDLST 226 (289)
T ss_pred HHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHh--CcEEEe---ecCC-ccceee-echhh
Confidence 3456799999887665556678899999999999999988854444333332 344443 2210 112232 11222
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
-+++-+.+++ ++.+..--||. ++.+..+-++|+..+.||-++.++.||++.+.++..
T Consensus 227 TskL~E~i~k---Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~~ 284 (289)
T KOG4201|consen 227 TSKLLEGIPK---DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELFG 284 (289)
T ss_pred HHHHHhhCcc---ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHHHHHhc
Confidence 2333333332 34444455665 999999999999999999999999999999988754
No 226
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=97.21 E-value=0.013 Score=55.49 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=89.6
Q ss_pred HHHHcCcCC-CCCeeEEEEec-----ChhhHHHHHHHcCCCEEEEccccc-------ccccHH---HHHHHHHHc-CCcE
Q 023494 106 VVDALRPVT-DLPLDVHLMIV-----EPEQRVPDFIKAGADIVSVHCEQS-------STIHLH---RTLNQIKDL-GAKA 168 (281)
Q Consensus 106 ~I~~ir~~t-~~~idaHLmv~-----dp~~~i~~~~~aGAd~Itvh~Ea~-------~~~~i~---~~l~~ik~~-G~k~ 168 (281)
.++.+|+.+ +.|+.+-+-+. ++..+.+....++||.+-+|.... ...+.. +.++.+++. ++.+
T Consensus 102 ~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPV 181 (326)
T cd02811 102 SFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPV 181 (326)
T ss_pred HHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCE
Confidence 445555553 47766665553 344444444457899999996320 112344 567777765 6666
Q ss_pred EEEECCC-CCHHHHHHhhc-cCCEEEEEeecCCC--------CC--------Ccc---chhHHHHHHHHHHHhhhcCCCC
Q 023494 169 GVVLNPA-TSLSAIECVLD-VVDLVLIMSVNPGF--------GG--------QSF---IESQVKKISDLRRMCLEKGVNP 227 (281)
Q Consensus 169 Glai~p~-t~ie~~~~~l~-~vD~IlvmsV~pG~--------~G--------Q~f---~~~~l~kI~~lr~l~~~~~~~~ 227 (281)
.+=.... +..+..+.+.+ .+|.|.+-+ .-|. .+ ..+ ...+.+.|.++++... ++
T Consensus 182 ivK~~g~g~s~~~a~~l~~~Gvd~I~vsG-~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~----~i 256 (326)
T cd02811 182 IVKEVGFGISRETAKRLADAGVKAIDVAG-AGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP----DL 256 (326)
T ss_pred EEEecCCCCCHHHHHHHHHcCCCEEEECC-CCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC----CC
Confidence 6644332 56676766655 389998743 2120 00 111 1123445555555432 47
Q ss_pred eEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 228 WIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 228 ~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+|.++|||. ...+.+++.+|||.+-+|+++..
T Consensus 257 pIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 257 PLIASGGIRNGLDIAKALALGADLVGMAGPFLK 289 (326)
T ss_pred cEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence 899999998 77888999999999999998654
No 227
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=97.20 E-value=0.015 Score=59.26 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=108.5
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeC-cccccc---c-CCHHHHHHcCcC-CCCCeeEEEEecCh-----------hhHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDG-RFVPNI---T-IGPLVVDALRPV-TDLPLDVHLMIVEP-----------EQRVP 132 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~---~-~G~~~I~~ir~~-t~~~idaHLmv~dp-----------~~~i~ 132 (281)
.+....++.+.++|++.+++- -| +|--.+ . --.+.++.+|+. ++.++-+.+-..|. ..+++
T Consensus 26 ~d~l~ia~~l~~~G~~~iE~~--ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~ 103 (592)
T PRK09282 26 EDMLPIAEKLDKVGFWSLEVW--GGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVE 103 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEec--CCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHH
Confidence 344556677788899988763 22 221111 1 123446666665 56666665444332 23578
Q ss_pred HHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----CCCCCHHHHHHhhc-----cCCEEEEEeecCCCCCC
Q 023494 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----NPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----~p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ 203 (281)
.+.++|.|.+.+-.......++...++.+|+.|+.+...+ .|-.+++.+.+++. .+|.|.+- -..|.
T Consensus 104 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~----Dt~G~ 179 (592)
T PRK09282 104 KAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIK----DMAGL 179 (592)
T ss_pred HHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC----CcCCC
Confidence 8899999988776543234568888999999999887554 44445555555443 26777552 23344
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
.......+.++.+++.+ +.+|.+ |.|....|.-..+++|||++=.
T Consensus 180 ~~P~~~~~lv~~lk~~~-----~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ 228 (592)
T PRK09282 180 LTPYAAYELVKALKEEV-----DLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDT 228 (592)
T ss_pred cCHHHHHHHHHHHHHhC-----CCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEe
Confidence 33344455566666554 256776 9999999999999999997643
No 228
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=97.18 E-value=0.026 Score=51.89 Aligned_cols=164 Identities=21% Similarity=0.201 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCC-HHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG-PLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G-~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
.-.+.++.|.+.|++.|++ |. |...-. .+.++.+.+.. ...+.+++ ..+ .+.++.+.++|++.|.+..-.
T Consensus 23 ~k~~i~~~L~~~Gv~~IEv----G~--P~~~~~~~~~~~~l~~~~~~~~v~~~~-r~~-~~di~~a~~~g~~~i~i~~~~ 94 (262)
T cd07948 23 DKIEIAKALDAFGVDYIEL----TS--PAASPQSRADCEAIAKLGLKAKILTHI-RCH-MDDARIAVETGVDGVDLVFGT 94 (262)
T ss_pred HHHHHHHHHHHcCCCEEEE----EC--CCCCHHHHHHHHHHHhCCCCCcEEEEe-cCC-HHHHHHHHHcCcCEEEEEEec
Confidence 3345667888999999988 32 432111 12344443321 12333322 233 236888999999998885411
Q ss_pred c--------------ccccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccch
Q 023494 149 S--------------STIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 149 ~--------------~~~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+ ..+.+.+.++.+|+.|+++.+.+. -.+|.+.+.++.+. +|.|.+ +-..|.....
T Consensus 95 S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~ 170 (262)
T cd07948 95 SPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGI----ADTVGIATPR 170 (262)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEE----CCcCCCCCHH
Confidence 0 123355677888899998887653 33566666665543 565544 3334554545
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
++.+.++.+++.. +.+|.+ |-|....|.-..+++|++.+
T Consensus 171 ~v~~~~~~~~~~~-----~~~i~~H~Hn~~Gla~an~~~a~~aG~~~v 213 (262)
T cd07948 171 QVYELVRTLRGVV-----SCDIEFHGHNDTGCAIANAYAALEAGATHI 213 (262)
T ss_pred HHHHHHHHHHHhc-----CCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 5566666666543 245665 77888889999999999964
No 229
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=97.18 E-value=0.016 Score=52.88 Aligned_cols=175 Identities=16% Similarity=0.114 Sum_probs=109.0
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
...+.+-..|.||+-+|..-|.|-. .-=...++.++. .+....|-+--.||. .+..+.++||+.|.++.-. +.++
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~~~~--~~~~~~~~a~~~-~g~~~~VRvp~~~~~-~i~r~LD~Ga~gIivP~v~-taee 98 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAPNDV--LTFIPQLMALKG-SASAPVVRPPWNEPV-IIKRLLDIGFYNFLIPFVE-SAEE 98 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCH--HHHHHHHHHHhh-cCCCcEEECCCCCHH-HHHHHhcCCCCEEEecCcC-CHHH
Confidence 4456667789999999988774321 111233333333 344445544334543 6788999999999988553 2455
Q ss_pred HHHHHHHH--------------------------HHcC--CcEEEEECCCCCHHHHHHhhc--cCCEEEEEee----cCC
Q 023494 154 LHRTLNQI--------------------------KDLG--AKAGVVLNPATSLSAIECVLD--VVDLVLIMSV----NPG 199 (281)
Q Consensus 154 i~~~l~~i--------------------------k~~G--~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV----~pG 199 (281)
.+++++.+ +..+ ..+.+.|....-++.+++++. .+|.+.+.+. .-|
T Consensus 99 a~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG 178 (249)
T TIGR03239 99 AERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALG 178 (249)
T ss_pred HHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcC
Confidence 55555322 2222 234444544344567777764 4888887532 335
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
..++...|+...-++++......+|. ...+ ..-+++.++..++.|++.+++|+.
T Consensus 179 ~~~~~~~~~v~~a~~~v~~aa~a~G~--~~g~-~~~~~~~~~~~~~~G~~~~~~~~D 232 (249)
T TIGR03239 179 HLGNPNHPDVQKAIRHIFDRAAAHGK--PCGI-LAPVEADARRYLEWGATFVAVGSD 232 (249)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCC--CEEE-cCCCHHHHHHHHHcCCCEEEEhHH
Confidence 55666668887777777777766543 3322 345678899999999999999965
No 230
>PLN02363 phosphoribosylanthranilate isomerase
Probab=97.18 E-value=0.052 Score=49.82 Aligned_cols=169 Identities=16% Similarity=0.203 Sum_probs=95.6
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcC-CCCCe-eEEEEec-ChhhHHHHHHHcCCCEEE
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPV-TDLPL-DVHLMIV-EPEQRVPDFIKAGADIVS 143 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~-t~~~i-daHLmv~-dp~~~i~~~~~aGAd~It 143 (281)
+.++++ ++.+.+.|+|++=+ + |.|.- ...++..++|.+. +...+ -|=+.++ ++....+.+.+.|.|.|-
T Consensus 54 it~~ed-a~~a~~~GaD~iGf--I---f~~~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQ 127 (256)
T PLN02363 54 ITSARD-AAMAVEAGADFIGM--I---LWPKSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQ 127 (256)
T ss_pred CCcHHH-HHHHHHcCCCEEEE--e---cCCCCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEE
Confidence 345544 66677789998743 2 33431 2456667777553 22111 1333554 445556677889999999
Q ss_pred EcccccccccHHHHHHHHHHcCCcEEEEECCCCCH---HHHHH-hhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHH
Q 023494 144 VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL---SAIEC-VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 144 vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i---e~~~~-~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l 219 (281)
+|... +. +.++.++. ++++.-+++..... +.+.+ +...+|++++=+ ..|-.|..|.-..+.. ..+
T Consensus 128 LHG~e----~~-~~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs-~~GGtG~t~DW~~l~~----~~~ 196 (256)
T PLN02363 128 LHGNG----SR-AAFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDCHLADWILVDS-ATGGSGKGFNWQNFKL----PSV 196 (256)
T ss_pred ECCCC----CH-HHHHHhhc-CCcEEEEEEECchHHHHHHHHhhccccCCEEEEeC-CCCCCCCccCHHHhcc----ccc
Confidence 99863 12 23444442 35665566554332 22322 223478887743 2355677775432210 011
Q ss_pred hhhcCCCCeEEEecCCChhcHHHHHH-cCCcEEEEccccc
Q 023494 220 CLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVF 258 (281)
Q Consensus 220 ~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf 258 (281)
. ...++.+.|||+++|+.++++ .++..+=+-|.+=
T Consensus 197 ~----~~~p~iLAGGL~peNV~~ai~~~~P~GVDVsSGVE 232 (256)
T PLN02363 197 R----SRNGWLLAGGLTPENVHEAVSLLKPTGVDVSSGIC 232 (256)
T ss_pred c----cCCCEEEECCCCHHHHHHHHHhcCCcEEEeCCccc
Confidence 0 123567999999999999876 5666666666664
No 231
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=97.14 E-value=0.093 Score=47.40 Aligned_cols=195 Identities=19% Similarity=0.241 Sum_probs=127.5
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~ 146 (281)
+.-+.-+....++++|+|-|-+ |--+.- -.-.+-+..||+....++.. -..-..++++.+.+..++.+|+-.
T Consensus 19 ~~Pdpv~aA~~a~~aGAdgITv-----HlReDrRHI~d~Dv~~L~~~~~~~lNl--E~a~t~em~~ia~~~kP~~vtLVP 91 (234)
T cd00003 19 NYPDPVEAALLAEKAGADGITV-----HLREDRRHIQDRDVRLLRELVRTELNL--EMAPTEEMLEIALEVKPHQVTLVP 91 (234)
T ss_pred CCCCHHHHHHHHHHcCCCEEEe-----cCCCCcCcCCHHHHHHHHHHcCCCEEe--ccCCCHHHHHHHHHCCCCEEEECC
Confidence 3446667778889999997644 211221 23345677777765555554 333334688999999999999998
Q ss_pred ccc-------------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCC-CCCCccchhHHH
Q 023494 147 EQS-------------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG-FGGQSFIESQVK 211 (281)
Q Consensus 147 Ea~-------------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG-~~GQ~f~~~~l~ 211 (281)
|.- ..+.+..+++.+++.|+++.+.+.|+ .+.++.-.+ .+|.|-+.|-.=. ..++.-...-++
T Consensus 92 Ekr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd--~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~ 169 (234)
T cd00003 92 EKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD--PEQIEAAKEVGADRVELHTGPYANAYDKAEREAELE 169 (234)
T ss_pred CCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHH
Confidence 742 11237889999999999999999986 333433322 4899987543211 011211233477
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHH-cCCcEEEEcccccCC---CCHHHHHHHHHHh
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVFGA---KDYAEAIKGIKTS 273 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf~a---~dp~~~~~~l~~~ 273 (281)
+|....++..+. ++.+...-|+|.+|+..+.+ -+..=+-+|.+|+.. --.++++++|++.
T Consensus 170 ~i~~aa~~a~~~--GL~VnAGHgLny~Nv~~i~~ip~i~ElnIGHsiia~Al~~Gl~~AV~~m~~~ 233 (234)
T cd00003 170 RIAKAAKLAREL--GLGVNAGHGLNYENVKPIAKIPGIAELNIGHAIISRALFVGLEEAVREMKDL 233 (234)
T ss_pred HHHHHHHHHHHc--CCEEecCCCCCHHHHHHHHhCCCCeEEccCHHHHHHHHHHhHHHHHHHHHHh
Confidence 777777766554 56788899999999998855 355667888887742 2355677777664
No 232
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.12 E-value=0.022 Score=51.62 Aligned_cols=172 Identities=19% Similarity=0.320 Sum_probs=108.1
Q ss_pred HHHHHHHHcCCCeEEEE-eeeCcccccccCCHHHHHH-------cCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 74 EQVKAVELAGCDWIHVD-VMDGRFVPNITIGPLVVDA-------LRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiD-ImDG~fvpn~~~G~~~I~~-------ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
++..+++++|+|-+=+- --|-.|.+ ..+++++.. +++.-..|+-+-+.=+|+..-+..+...||+.|-+-
T Consensus 38 ~dA~~leegG~DavivEN~gD~Pf~k--~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~vaA~~IA~a~gA~FIRVN 115 (263)
T COG0434 38 RDAAALEEGGVDAVIVENYGDAPFLK--DVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVAALAIAYAVGADFIRVN 115 (263)
T ss_pred HHHHHHHhCCCcEEEEeccCCCCCCC--CCChHHHHHHHHHHHHHHHhccccceeeeeccccHHHHHHHHhcCCCEEEEE
Confidence 44567889999976332 22445555 556666544 344345899999999999877777788899998865
Q ss_pred cccc---c-----cccHHHHHHHHHHcCCcEEE--EECCC--C-----CHHH-HHHhhc--cCCEEEEEeecCCC-CCCc
Q 023494 146 CEQS---S-----TIHLHRTLNQIKDLGAKAGV--VLNPA--T-----SLSA-IECVLD--VVDLVLIMSVNPGF-GGQS 204 (281)
Q Consensus 146 ~Ea~---~-----~~~i~~~l~~ik~~G~k~Gl--ai~p~--t-----~ie~-~~~~l~--~vD~IlvmsV~pG~-~GQ~ 204 (281)
.-+. + .....++++.-+..+.++-+ .+.+. . +++. .+.-+. .+|-|.+- |. +|.+
T Consensus 116 ~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~t----G~~TG~~ 191 (263)
T COG0434 116 VLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVT----GSRTGSP 191 (263)
T ss_pred eeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEe----cccCCCC
Confidence 3321 0 11355666666666544332 33222 2 3332 222122 37888763 32 2433
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
- .++.|+.+++.. +.++-|.-|++++|+.++++. ||.+|+||+|=+.
T Consensus 192 ~---d~~el~~a~~~~-----~~pvlvGSGv~~eN~~~~l~~-adG~IvgT~lK~~ 238 (263)
T COG0434 192 P---DLEELKLAKEAV-----DTPVLVGSGVNPENIEELLKI-ADGVIVGTSLKKG 238 (263)
T ss_pred C---CHHHHHHHHhcc-----CCCEEEecCCCHHHHHHHHHH-cCceEEEEEEccC
Confidence 3 344555555543 267889999999999999998 9999999998754
No 233
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.11 E-value=0.015 Score=52.53 Aligned_cols=193 Identities=21% Similarity=0.292 Sum_probs=110.5
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCccccc---------ccCCHHHHHHcCcCCCCCeeEEEEecChhhHHH--HHH
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFI 135 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---------~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~--~~~ 135 (281)
.|..+- ++-+.++++|+ +-+|--.-+|- -.-.|..|++|-....+|+-+..-+-+ |++ .+-
T Consensus 25 MDV~n~-EQA~IAE~aGA----vAVMaLervPaDiR~aGGVaRMaDp~~i~eim~aVsIPVMAKvRIGH---~~EA~iLe 96 (296)
T COG0214 25 MDVVNA-EQARIAEEAGA----VAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKVRIGH---FVEAQILE 96 (296)
T ss_pred EEecCH-HHHHHHHhcCc----eeEeehhhCcHHHHhccCccccCCHHHHHHHHHhcccceeeeeecch---hHHHHHHH
Confidence 466665 45678888886 34454333442 133688888887765688877554444 544 344
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCH-HHHHHhhccCCEEEEEeecCCCCCC--c--cchhHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-SAIECVLDVVDLVLIMSVNPGFGGQ--S--FIESQV 210 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-e~~~~~l~~vD~IlvmsV~pG~~GQ--~--f~~~~l 210 (281)
..|.|+|- |+. .-++......|.|...++=.+.. ...+ |.++.+.+.+-+|=- --++|.+.- . -.....
T Consensus 97 algVD~ID---ESE-VLTPAD~~~Hi~K~~FtVPFVcG-arnLgEAlRRI~EGAaMIRT-KGEaGTGnv~eAVrHmr~i~ 170 (296)
T COG0214 97 ALGVDMID---ESE-VLTPADEEFHINKWKFTVPFVCG-ARNLGEALRRISEGAAMIRT-KGEAGTGNVVEAVRHMRKIN 170 (296)
T ss_pred HhCCCccc---ccc-ccCCCchhhhcchhhcccceecC-cCcHHHHHHHHhhhHHHHhc-CCCCCCCcHHHHHHHHHHHH
Confidence 67999883 431 22333344445555555444433 3344 556666555544411 124555430 0 111112
Q ss_pred HHHHHHHHHh---------------------hhcCCCCeEE--EecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHH
Q 023494 211 KKISDLRRMC---------------------LEKGVNPWIE--VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEA 266 (281)
Q Consensus 211 ~kI~~lr~l~---------------------~~~~~~~~I~--VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~ 266 (281)
..|++++.+. .+.| .+++. ..|||- +.....+.+.|+|.+-|||.||+++||++.
T Consensus 171 ~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~g-rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~ 249 (296)
T COG0214 171 GEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKR 249 (296)
T ss_pred HHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhC-CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHH
Confidence 2222222111 1111 12322 578886 889999999999999999999999999999
Q ss_pred HHHHHHhc
Q 023494 267 IKGIKTSK 274 (281)
Q Consensus 267 ~~~l~~~~ 274 (281)
++.+-+..
T Consensus 250 A~AIV~A~ 257 (296)
T COG0214 250 AKAIVEAT 257 (296)
T ss_pred HHHHHHHH
Confidence 98887643
No 234
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=97.09 E-value=0.019 Score=54.91 Aligned_cols=190 Identities=17% Similarity=0.175 Sum_probs=106.5
Q ss_pred CceEeEEEecc--CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEec-Chh---h
Q 023494 57 DIIVSPSILSA--NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIV-EPE---Q 129 (281)
Q Consensus 57 ~~~i~pSila~--D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~-dp~---~ 129 (281)
.+.|+|.=+.. .+.--....+.+.+.|+-+. ++.. +...+.|.+-. .++.++-..|.+. |.. .
T Consensus 66 Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~---------lss~s~~s~e~v~~~~-~~~~~~w~Qly~~~d~~~~~~ 135 (344)
T cd02922 66 PFFISPAALAKLAHPDGELNLARAAGKHGILQM---------ISTNASCSLEEIVDAR-PPDQPLFFQLYVNKDRTKTEE 135 (344)
T ss_pred ceeeChHHHhhhCCchHHHHHHHHHHHcCCCEE---------ecCcccCCHHHHHHhc-CCCCcEEEEEeecCCHHHHHH
Confidence 56777766433 22111233345556666432 1222 22334433211 1334555666553 322 3
Q ss_pred HHHHHHHcCCCEEEEccccccc-----------------------------------------ccHHHHHHHHHHcCCcE
Q 023494 130 RVPDFIKAGADIVSVHCEQSST-----------------------------------------IHLHRTLNQIKDLGAKA 168 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~-----------------------------------------~~i~~~l~~ik~~G~k~ 168 (281)
.++.+.++|++.+.+|....-. ....+.++++++.- +.
T Consensus 136 l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~ 214 (344)
T cd02922 136 LLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT-KL 214 (344)
T ss_pred HHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhc-CC
Confidence 5677889999999999664200 01124566666643 22
Q ss_pred EEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc
Q 023494 169 GVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA 246 (281)
Q Consensus 169 Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a 246 (281)
-+.+..-+..+..+...+ .+|.|.+- -+-|. .....+.+++-|.++++.....+.+++|.+||||. -..+-+++.+
T Consensus 215 PvivKgv~~~~dA~~a~~~G~d~I~vs-nhgG~-~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaL 292 (344)
T cd02922 215 PIVLKGVQTVEDAVLAAEYGVDGIVLS-NHGGR-QLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCL 292 (344)
T ss_pred cEEEEcCCCHHHHHHHHHcCCCEEEEE-CCCcc-cCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHc
Confidence 223333345666666655 48999874 22222 11122344555666666554333357899999999 6688899999
Q ss_pred CCcEEEEcccccC
Q 023494 247 GANALVAGSAVFG 259 (281)
Q Consensus 247 GAD~~VvGSaIf~ 259 (281)
|||.+-+|+.++.
T Consensus 293 GA~aV~iG~~~l~ 305 (344)
T cd02922 293 GAKAVGLGRPFLY 305 (344)
T ss_pred CCCEEEECHHHHH
Confidence 9999999998764
No 235
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=97.09 E-value=0.032 Score=53.40 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=102.5
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCccc-----ccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFV-----PNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fv-----pn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
.+.++.|.+.|++.|++ |.|+ |.+.--.+.++.+++..+..+-+ .+-| .+-++.+.++|++.|.+-.-
T Consensus 71 i~ia~~L~~~GV~~IEv----Gs~vspk~vPqmad~~ev~~~i~~~~~~~~~~--l~~n-~~die~A~~~g~~~v~i~~s 143 (347)
T PLN02746 71 VELIQRLVSSGLPVVEA----TSFVSPKWVPQLADAKDVMAAVRNLEGARFPV--LTPN-LKGFEAAIAAGAKEVAVFAS 143 (347)
T ss_pred HHHHHHHHHcCCCEEEE----CCCcCcccccccccHHHHHHHHHhccCCceeE--EcCC-HHHHHHHHHcCcCEEEEEEe
Confidence 35567788999999888 5544 34433345677777644333222 1223 34688899999998877632
Q ss_pred cc--------------ccccHHHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHhhcc-----CCEEEEEeecCCC
Q 023494 148 QS--------------STIHLHRTLNQIKDLGAKAGVVLN-----P---ATSLSAIECVLDV-----VDLVLIMSVNPGF 200 (281)
Q Consensus 148 a~--------------~~~~i~~~l~~ik~~G~k~Glai~-----p---~t~ie~~~~~l~~-----vD~IlvmsV~pG~ 200 (281)
++ ..+.+.+.++.+|+.|+++...+. | .++.+.+.++.+. +|.|.+ +-.
T Consensus 144 ~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l----~DT 219 (347)
T PLN02746 144 ASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISL----GDT 219 (347)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEe----cCC
Confidence 11 012345788889999998864442 2 2455555555442 676654 233
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
.|.....++.+.++.+++.++. .+|.+ |-|....|.-..+++||+.|=
T Consensus 220 ~G~a~P~~v~~lv~~l~~~~~~----~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd 271 (347)
T PLN02746 220 IGVGTPGTVVPMLEAVMAVVPV----DKLAVHFHDTYGQALANILVSLQMGISTVD 271 (347)
T ss_pred cCCcCHHHHHHHHHHHHHhCCC----CeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 4544444555667777665431 24555 888998899999999999863
No 236
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=97.09 E-value=0.012 Score=56.47 Aligned_cols=141 Identities=15% Similarity=0.159 Sum_probs=88.7
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCC-------H----HHHHHhhccCCE-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------L----SAIECVLDVVDL- 190 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~-------i----e~~~~~l~~vD~- 190 (281)
.+++.++|++++.+. .| +.+.+..-++.+.++|+.+.+-+.-... . ..+...++.++.
T Consensus 88 ~~mL~d~G~~~viiGHSERR~~f~E--td~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~~v~~~ 165 (355)
T PRK14905 88 PLMLKELGIELVMIGHSERRHVLKE--TDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAE 165 (355)
T ss_pred HHHHHHcCCCEEEECcccccCcccc--cHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHccCCHh
Confidence 568899999999875 33 2445667777888999998887753211 1 112222222210
Q ss_pred ---EEEEeecC----CCCCCccch----hHHHHHHHH-HHHhhhcCCCCeEEEecCCChhcHHHH-HHcCCcEEEEcccc
Q 023494 191 ---VLIMSVNP----GFGGQSFIE----SQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAV 257 (281)
Q Consensus 191 ---IlvmsV~p----G~~GQ~f~~----~~l~kI~~l-r~l~~~~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaI 257 (281)
=++..-+| |.+|+.-.| .+.+.|++. .+...+...+.+|--.|+|+++|+.++ ...++|.+-+|++.
T Consensus 166 ~~~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~as 245 (355)
T PRK14905 166 QLPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELIMKPHIDGLFIGRSA 245 (355)
T ss_pred hcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCCHHHHHHHhcCCCCCEEEechhh
Confidence 02233456 555665544 334444433 233222223568889999999999976 56779999999999
Q ss_pred cCCCCHHHHHHHHHHh
Q 023494 258 FGAKDYAEAIKGIKTS 273 (281)
Q Consensus 258 f~a~dp~~~~~~l~~~ 273 (281)
.+++++.+.++.+.+.
T Consensus 246 l~~~~f~~Ii~~~~~~ 261 (355)
T PRK14905 246 WDAQCFHALIADALKA 261 (355)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9888887777666553
No 237
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.09 E-value=0.0075 Score=60.03 Aligned_cols=130 Identities=22% Similarity=0.367 Sum_probs=84.6
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE-CCCCCHHHHHHhhc-cCCEEEEEeecCC-------
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPG------- 199 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-~p~t~ie~~~~~l~-~vD~IlvmsV~pG------- 199 (281)
+.++.+.++|+|.|.+-..........+.++++|+.--.+-+.- |-.|.- ..+.+++ .+|.|-+ ++=||
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~-~a~~l~~aGad~v~v-gig~gsictt~~ 307 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAE-GTRDLVEAGADIVKV-GVGPGAMCTTRM 307 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHH-HHHHHHHcCCCEEEE-CccCCccccccc
Confidence 46777889999998875443223567788999998643444444 555544 3445544 5899864 22232
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
..|... | .+.-|.++.+...+ .+.++..||||. ++.+.+++.+|||.+++|+.+-.. |.|.
T Consensus 308 ~~~~~~-p-~~~av~~~~~~~~~--~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg 370 (479)
T PRK07807 308 MTGVGR-P-QFSAVLECAAAARE--LGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPG 370 (479)
T ss_pred ccCCch-h-HHHHHHHHHHHHHh--cCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCC
Confidence 222111 2 23444444444333 357888999999 889999999999999999998754 4554
No 238
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.07 E-value=0.0019 Score=57.46 Aligned_cols=77 Identities=14% Similarity=0.266 Sum_probs=55.6
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|.+..+.|-+. +|.+.+...+.-+.|+.-. ++.|+++++.. +.++.++|||+ .+.+..+.++|||.+|+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~---~~~i~~i~~~~-----~~pi~~ggGI~~~ed~~~~~~~Ga~~vvl 100 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVN---LPVIKKIVRET-----GVPVQVGGGIRSLEDVEKLLDLGVDRVII 100 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCc---HHHHHHHHHhc-----CCCEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 466766666443 7888887666444554433 34455555543 36899999999 79999999999999999
Q ss_pred cccccCC
Q 023494 254 GSAVFGA 260 (281)
Q Consensus 254 GSaIf~a 260 (281)
|++.++.
T Consensus 101 gs~~l~d 107 (230)
T TIGR00007 101 GTAAVEN 107 (230)
T ss_pred ChHHhhC
Confidence 9999863
No 239
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=97.06 E-value=0.0074 Score=56.61 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=60.4
Q ss_pred HHHHHHHHHHc-C--CcEEEEECCCC-CHHHHHHhhc----cCCEEEEEeecCC-CCCCccchhHHHHHHHHHHHhhhcC
Q 023494 154 LHRTLNQIKDL-G--AKAGVVLNPAT-SLSAIECVLD----VVDLVLIMSVNPG-FGGQSFIESQVKKISDLRRMCLEKG 224 (281)
Q Consensus 154 i~~~l~~ik~~-G--~k~Glai~p~t-~ie~~~~~l~----~vD~IlvmsV~pG-~~GQ~f~~~~l~kI~~lr~l~~~~~ 224 (281)
..+.++.+++. . .++-+.+..-. .++...+..+ .+|.|++= +.+ ..| ...+.++++++.++..+
T Consensus 170 ~~~A~~~~~~~~p~~~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lD--n~~~~~G-----~~~~~~~~~~~~l~~~g 242 (302)
T cd01571 170 QVEAWKAFDETYPEDVPRIALIDTFNDEKEEALKAAKALGDKLDGVRLD--TPSSRRG-----VFRYLIREVRWALDIRG 242 (302)
T ss_pred HHHHHHHHHHHCCCcCCeEEEEeecCcchHHHHHHHHHhCCCCcEEEEC--CCCCCCC-----CHHHHHHHHHHHHHhCC
Confidence 34456666653 2 45555443322 2333333322 37877651 111 112 23333445555554443
Q ss_pred -CCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 225 -VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 225 -~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+..|++-||||++++.++.+.|+|++-+||.+.++
T Consensus 243 ~~~~~ieaSGgI~~~~i~~~a~~gvD~isvGs~~~~~ 279 (302)
T cd01571 243 YKHVKIFVSGGLDEEDIKELEDVGVDAFGVGTAISKA 279 (302)
T ss_pred CCCeEEEEeCCCCHHHHHHHHHcCCCEEECCcccCCC
Confidence 457899999999999999999999999999998865
No 240
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.06 E-value=0.0057 Score=54.46 Aligned_cols=190 Identities=19% Similarity=0.264 Sum_probs=110.5
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccc---------ccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHH--HHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPD--FIK 136 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---------~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~--~~~ 136 (281)
|..+- ++.+.++++|+=. +|--.-+|. -.-.|.+|++|+....+|+.+..-+-+ |++. +-.
T Consensus 27 dVv~~-eQA~iAE~aGACa----VmalervPadiR~~GgV~RMsDP~mIKei~~aVsiPVMAk~RiGH---FVEAQIlE~ 98 (296)
T KOG1606|consen 27 DVVNA-EQARIAEEAGACA----VMALERVPADIRAQGGVARMSDPRMIKEIKNAVSIPVMAKVRIGH---FVEAQILEA 98 (296)
T ss_pred EecCH-HHHHHHHhcCcce----EeeeccCCHhHHhcCCeeecCCHHHHHHHHHhccchhhhhhhhhh---hhHHHHHHH
Confidence 44444 4456677777532 222222331 133689999998876677766443333 6653 345
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
.|.|||- |+ ..-++...-..|.+++.++=.......--|.++.+-+.+-+|-.- -+.|.+ -.-+..+.++.+
T Consensus 99 l~vDYiD---ES-Evlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtk-GeagTG---~v~EaVkhvr~i 170 (296)
T KOG1606|consen 99 LGVDYID---ES-EVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTK-GEAGTG---DVSEAVKHVRSI 170 (296)
T ss_pred hccCccc---hh-hhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheec-cccCCC---cHHHHHHHHHHH
Confidence 6889883 43 133455666777888888766665444446666655544444211 122322 222222222221
Q ss_pred -------HHH------------------h---hhcCCCCeEE--EecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHH
Q 023494 217 -------RRM------------------C---LEKGVNPWIE--VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAE 265 (281)
Q Consensus 217 -------r~l------------------~---~~~~~~~~I~--VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~ 265 (281)
+++ + .+.| .+++. ..||+. +..+..+.+.|.|.+-+||.||++.||.+
T Consensus 171 ~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~G-rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k 249 (296)
T KOG1606|consen 171 NGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQLG-RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVK 249 (296)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHcC-CCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHH
Confidence 110 0 1111 12221 478887 88999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 023494 266 AIKGIKTSK 274 (281)
Q Consensus 266 ~~~~l~~~~ 274 (281)
.++.+-+..
T Consensus 250 ~a~aiVqAv 258 (296)
T KOG1606|consen 250 RARAIVQAV 258 (296)
T ss_pred HHHHHHHHH
Confidence 888876643
No 241
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=97.06 E-value=0.024 Score=56.69 Aligned_cols=173 Identities=15% Similarity=0.171 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCccccc----ccC-CHHHHHHcCcC-CCCCeeEEEEec-------Ch----hhHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPN----ITI-GPLVVDALRPV-TDLPLDVHLMIV-------EP----EQRVPD 133 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn----~~~-G~~~I~~ir~~-t~~~idaHLmv~-------dp----~~~i~~ 133 (281)
++....+.+.+.|++.|++- =|...+. ... -.+.++.+|+. ++.++-..+--. -| ..+++.
T Consensus 28 d~l~ia~~ld~~G~~siE~~--GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~ 105 (499)
T PRK12330 28 DMVGACEDIDNAGYWSVECW--GGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEK 105 (499)
T ss_pred HHHHHHHHHHhcCCCEEEec--CCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHH
Confidence 44455567778899887763 2211121 122 23457888775 666666544211 12 246888
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE----EECCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCc
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV----VLNPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl----ai~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~ 204 (281)
.+++|.|.+.+-.......++...++.+|+.|..+-. .++|....+.+.++... +|.|.+ +-..|-.
T Consensus 106 a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~I----kDtaGll 181 (499)
T PRK12330 106 SAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICI----KDMAALL 181 (499)
T ss_pred HHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEe----CCCccCC
Confidence 8999999977664432346788899999999997733 34777777766666542 676654 2334544
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
......+.++.+++.++ .+++|.+ |-|....|.-..+++|||++=
T Consensus 182 ~P~~~~~LV~~Lk~~~~---~~ipI~~H~Hnt~GlA~An~laAieAGad~vD 230 (499)
T PRK12330 182 KPQPAYDIVKGIKEACG---EDTRINLHCHSTTGVTLVSLMKAIEAGVDVVD 230 (499)
T ss_pred CHHHHHHHHHHHHHhCC---CCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEE
Confidence 44455666777776542 1356776 678888899999999999763
No 242
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.05 E-value=0.0014 Score=59.04 Aligned_cols=75 Identities=16% Similarity=0.312 Sum_probs=52.6
Q ss_pred CCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 176 TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 176 t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
.|.+.++.|.+.++.+.+...+--..|+.-+ ++-++++++.. +.++.++|||+ .+.++.+.++|+|.+|+|
T Consensus 31 dp~~~a~~~~~~~~~l~ivDldga~~g~~~n---~~~i~~i~~~~-----~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 31 DPVEIALRFSEYVDKIHVVDLDGAFEGKPKN---LDVVKNIIRET-----GLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CHHHHHHHHHHhCCEEEEEECcchhcCCcch---HHHHHHHHhhC-----CCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 5677667665557878775554222343333 33344444332 46899999999 889999999999999999
Q ss_pred cccc
Q 023494 255 SAVF 258 (281)
Q Consensus 255 SaIf 258 (281)
++.+
T Consensus 103 taa~ 106 (228)
T PRK04128 103 TKAF 106 (228)
T ss_pred chhc
Confidence 9988
No 243
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.05 E-value=0.013 Score=58.30 Aligned_cols=135 Identities=16% Similarity=0.322 Sum_probs=83.0
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC--CCC-
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQ- 203 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~--~GQ- 203 (281)
.+.++.+.++|+|.|.+-....-.....+.++++|+.-..+-+....--..+..+.+++ .+|.|-+ ++-||. .-+
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~v-g~g~Gs~~ttr~ 305 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKV-GVGPGAMCTTRM 305 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEE-CCcCCccccCcc
Confidence 35677889999999988644322345667888888863233332222234455666655 4899865 233331 000
Q ss_pred --ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHHH
Q 023494 204 --SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYAE 265 (281)
Q Consensus 204 --~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~~ 265 (281)
.+-...+.-+.++.+...+. +++|..||||+ +..+.+.+.+|||.+.+||.+-+. |.|.+
T Consensus 306 ~~~~g~~~~~a~~~~~~~~~~~--~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 306 MTGVGRPQFSAVLECAAEARKL--GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred ccCCCCchHHHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCc
Confidence 11111233333343333332 57888999999 889999999999999999998754 44544
No 244
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=97.04 E-value=0.035 Score=53.29 Aligned_cols=181 Identities=19% Similarity=0.201 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH-HHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP-LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~-~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
+-.+.++.|.+.|++.|++ | .|..+-.. +.++.+++. ++..+.++. -.+ .+.++.+.++|++.|.+..-.
T Consensus 24 ~k~~ia~~L~~~Gv~~IEv----G--~p~~~~~~~e~i~~i~~~~~~~~i~~~~-r~~-~~di~~a~~~g~~~i~i~~~~ 95 (365)
T TIGR02660 24 EKLAIARALDEAGVDELEV----G--IPAMGEEERAVIRAIVALGLPARLMAWC-RAR-DADIEAAARCGVDAVHISIPV 95 (365)
T ss_pred HHHHHHHHHHHcCCCEEEE----e--CCCCCHHHHHHHHHHHHcCCCcEEEEEc-CCC-HHHHHHHHcCCcCEEEEEEcc
Confidence 4445667788999999888 3 36554333 678888654 333333322 123 235788899999998877543
Q ss_pred cc--------------cccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccch
Q 023494 149 SS--------------TIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 149 ~~--------------~~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~ 207 (281)
.+ .+.+.+.++.+|+.|.++-+... +.++.+.+.++... +|.|.+ +-..|.....
T Consensus 96 Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l----~DT~G~~~P~ 171 (365)
T TIGR02660 96 SDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRF----ADTVGILDPF 171 (365)
T ss_pred CHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEE----cccCCCCCHH
Confidence 10 12345788899999988766543 33566666666542 676654 3334544444
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEccccc------CCCCHHHHHHHH
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVF------GAKDYAEAIKGI 270 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf------~a~dp~~~~~~l 270 (281)
++.+.++.+++.. +++|++ |-|....|.-..+++||+.+ =+++. ++.+.++.+..+
T Consensus 172 ~v~~lv~~l~~~~-----~v~l~~H~HNd~GlA~ANalaA~~aGa~~v--d~tl~GiGeraGN~~lE~lv~~L 237 (365)
T TIGR02660 172 STYELVRALRQAV-----DLPLEMHAHNDLGMATANTLAAVRAGATHV--NTTVNGLGERAGNAALEEVAMAL 237 (365)
T ss_pred HHHHHHHHHHHhc-----CCeEEEEecCCCChHHHHHHHHHHhCCCEE--EEEeeccccccccCCHHHHHHHH
Confidence 4455666666543 245666 88888889999999999975 22232 234555555555
No 245
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.04 E-value=0.02 Score=54.24 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=79.1
Q ss_pred HHHHcCCCEEEEcccc--------ccc----------------ccHHHHHHHHHHc-C--CcEEEEECC------CCCHH
Q 023494 133 DFIKAGADIVSVHCEQ--------SST----------------IHLHRTLNQIKDL-G--AKAGVVLNP------ATSLS 179 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea--------~~~----------------~~i~~~l~~ik~~-G--~k~Glai~p------~t~ie 179 (281)
.+.++|.|.|-+|.-. ++. .-+.++++++|+. | +.+++-+++ ....+
T Consensus 157 ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~e 236 (338)
T cd04733 157 LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEE 236 (338)
T ss_pred HHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHH
Confidence 3467899999999653 111 0145788888875 4 568888874 23444
Q ss_pred HHHHhh---c--cCCEEEEEeecCCCCCCcc----------chh--HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHH
Q 023494 180 AIECVL---D--VVDLVLIMSVNPGFGGQSF----------IES--QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY 241 (281)
Q Consensus 180 ~~~~~l---~--~vD~IlvmsV~pG~~GQ~f----------~~~--~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~ 241 (281)
+..+++ + .+|+|-+. .|...+.. .+. .++-.+++|+.. +++|.++|+|+ ++.+.
T Consensus 237 ea~~ia~~Le~~Gvd~iev~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-----~iPVi~~G~i~t~~~a~ 308 (338)
T cd04733 237 DALEVVEALEEAGVDLVELS---GGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-----KTPLMVTGGFRTRAAME 308 (338)
T ss_pred HHHHHHHHHHHcCCCEEEec---CCCCCCccccccccCCccccchhhHHHHHHHHHHc-----CCCEEEeCCCCCHHHHH
Confidence 333332 2 26777553 33222211 011 133344555543 47899999995 88999
Q ss_pred HHHHcC-CcEEEEcccccCCCCHHHH
Q 023494 242 KVIEAG-ANALVAGSAVFGAKDYAEA 266 (281)
Q Consensus 242 ~~~~aG-AD~~VvGSaIf~a~dp~~~ 266 (281)
++++.| +|++-+|+.+...++.-..
T Consensus 309 ~~l~~g~aD~V~lgR~~iadP~~~~k 334 (338)
T cd04733 309 QALASGAVDGIGLARPLALEPDLPNK 334 (338)
T ss_pred HHHHcCCCCeeeeChHhhhCccHHHH
Confidence 999887 8999999999976665433
No 246
>PLN02389 biotin synthase
Probab=97.04 E-value=0.07 Score=51.65 Aligned_cols=196 Identities=17% Similarity=0.170 Sum_probs=110.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeC--cccc--cccCCHHHHHHcCcCCCCCeeEEEEe--cChhhHHHHHHHcCCCE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDG--RFVP--NITIGPLVVDALRPVTDLPLDVHLMI--VEPEQRVPDFIKAGADI 141 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG--~fvp--n~~~G~~~I~~ir~~t~~~idaHLmv--~dp~~~i~~~~~aGAd~ 141 (281)
++..+.+.++.+.+.|+..+++- ..| .+-+ .+.+=.++++.+|+ .+ +.++.-. .+ .+.++.+.++|.|.
T Consensus 117 s~EeIl~~a~~~~~~G~~~~~iv-ts~rg~~~e~~~~e~i~eiir~ik~-~~--l~i~~s~G~l~-~E~l~~LkeAGld~ 191 (379)
T PLN02389 117 SKDDVLEAAKRAKEAGSTRFCMG-AAWRDTVGRKTNFNQILEYVKEIRG-MG--MEVCCTLGMLE-KEQAAQLKEAGLTA 191 (379)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE-ecccCCCCChhHHHHHHHHHHHHhc-CC--cEEEECCCCCC-HHHHHHHHHcCCCE
Confidence 33344455556667799988762 111 1111 12233455666664 23 3333211 12 24577889999999
Q ss_pred EEEcccccc--------cc---cHHHHHHHHHHcCCcE--EEEECCCCCHHHHHHh---h---c-cCCEEEEEee--cCC
Q 023494 142 VSVHCEQSS--------TI---HLHRTLNQIKDLGAKA--GVVLNPATSLSAIECV---L---D-VVDLVLIMSV--NPG 199 (281)
Q Consensus 142 Itvh~Ea~~--------~~---~i~~~l~~ik~~G~k~--Glai~p~t~ie~~~~~---l---~-~vD~IlvmsV--~pG 199 (281)
+..-.|+.+ .. +.-++++.+++.|+++ |+.+......++.... + + .+|.|-+... .||
T Consensus 192 ~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~G 271 (379)
T PLN02389 192 YNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKG 271 (379)
T ss_pred EEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCC
Confidence 888777320 11 2347888889999998 5566555444332221 1 1 3566655433 345
Q ss_pred CC--CC-ccch-hHHHHHHHHHHHhhhcCCCCeEEEecCC---ChhcHHHHHHcCCcEEEEccc-ccCC-CCHHHHHHHH
Q 023494 200 FG--GQ-SFIE-SQVKKISDLRRMCLEKGVNPWIEVDGGV---GPKNAYKVIEAGANALVAGSA-VFGA-KDYAEAIKGI 270 (281)
Q Consensus 200 ~~--GQ-~f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI---~~e~i~~~~~aGAD~~VvGSa-If~a-~dp~~~~~~l 270 (281)
.. +. +..+ +.+..|.-.|-++++. .|-+.||= ..+.-.....+|||.+++|-+ ++.. .++.+-.+-+
T Consensus 272 TpL~~~~~~s~~e~lr~iAi~Rl~lP~~----~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~~d~~~~ 347 (379)
T PLN02389 272 TPLEDQKPVEIWEMVRMIATARIVMPKA----MVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAMF 347 (379)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHCCCc----cccccccccccChhHHHHHHHhCCCEEEECCcccCCCCCChHHHHHHH
Confidence 42 22 1223 4466666666666543 23345663 345567889999999999998 8754 4566666555
Q ss_pred HH
Q 023494 271 KT 272 (281)
Q Consensus 271 ~~ 272 (281)
++
T Consensus 348 ~~ 349 (379)
T PLN02389 348 KE 349 (379)
T ss_pred HH
Confidence 55
No 247
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.04 E-value=0.0021 Score=58.08 Aligned_cols=77 Identities=13% Similarity=0.228 Sum_probs=54.2
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++..+.|.+. +|.+.+.-.+ +..|.. ..++-|+++.+.. ..+++++|||+ .|.++.+..+||+-+++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd-~~~g~~---~n~~~i~~i~~~~-----~~pv~vgGGirs~edv~~~l~~Ga~kvvi 103 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLD-AAFGRG---SNRELLAEVVGKL-----DVKVELSGGIRDDESLEAALATGCARVNI 103 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecc-ccCCCC---ccHHHHHHHHHHc-----CCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence 567766666553 6777766555 322322 2234455555543 36899999999 89999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
||+.++.+
T Consensus 104 Gs~~l~~p 111 (241)
T PRK14024 104 GTAALENP 111 (241)
T ss_pred CchHhCCH
Confidence 99999754
No 248
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.03 E-value=0.0085 Score=57.19 Aligned_cols=129 Identities=19% Similarity=0.257 Sum_probs=78.7
Q ss_pred HHHcCCCEEEEcccc--------cc-----cc-----------cHHHHHHHHHHc-C------CcEEEEECCCC------
Q 023494 134 FIKAGADIVSVHCEQ--------SS-----TI-----------HLHRTLNQIKDL-G------AKAGVVLNPAT------ 176 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea--------~~-----~~-----------~i~~~l~~ik~~-G------~k~Glai~p~t------ 176 (281)
+.++|.|+|-+|.-. .+ ++ -+.++++.+|+. | ..+|+=+++..
T Consensus 153 a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~ 232 (353)
T cd04735 153 AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGI 232 (353)
T ss_pred HHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCC
Confidence 467899999999631 01 00 155788888874 4 45777777643
Q ss_pred CHHHHHHh---hc--cCCEEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCC
Q 023494 177 SLSAIECV---LD--VVDLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGA 248 (281)
Q Consensus 177 ~ie~~~~~---l~--~vD~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGA 248 (281)
..++..++ ++ .+|+|-+.... +.... ..+...+.++.+++... .++++.+-||| +++.+.++++.|+
T Consensus 233 ~~ee~~~i~~~L~~~GvD~I~Vs~g~--~~~~~~~~~~~~~~~~~~ik~~~~---~~iPVi~~Ggi~t~e~ae~~l~~ga 307 (353)
T cd04735 233 RMEDTLALVDKLADKGLDYLHISLWD--FDRKSRRGRDDNQTIMELVKERIA---GRLPLIAVGSINTPDDALEALETGA 307 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCc--cccccccCCcchHHHHHHHHHHhC---CCCCEEEECCCCCHHHHHHHHHcCC
Confidence 23333333 32 27888763211 11111 11112333444555432 24678899999 5999999999999
Q ss_pred cEEEEcccccCCCCHHHHH
Q 023494 249 NALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 249 D~~VvGSaIf~a~dp~~~~ 267 (281)
|.+.+|+++...+|....+
T Consensus 308 D~V~~gR~liadPdl~~k~ 326 (353)
T cd04735 308 DLVAIGRGLLVDPDWVEKI 326 (353)
T ss_pred ChHHHhHHHHhCccHHHHH
Confidence 9999999998777754333
No 249
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=97.03 E-value=0.026 Score=51.72 Aligned_cols=176 Identities=15% Similarity=0.136 Sum_probs=108.7
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
...+.+-..|.||+-+|..-|.|-. .-=...++.++. .+....|-+=..||. ++..+.++||++|.++.-. +.++
T Consensus 31 ~~~e~~a~~G~D~v~iD~EHg~~~~--~~~~~~i~a~~~-~g~~~lVRvp~~~~~-~i~r~LD~Ga~giivP~v~-tae~ 105 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEHAPNDV--STFIPQLMALKG-SASAPVVRVPTNEPV-IIKRLLDIGFYNFLIPFVE-TAEE 105 (256)
T ss_pred HHHHHHHhcCCCEEEEccccCCCCH--HHHHHHHHHHhh-cCCCcEEECCCCCHH-HHHHHhCCCCCeeeecCcC-CHHH
Confidence 4566777889999999988885421 111223333333 344555544444543 6788999999999888543 2455
Q ss_pred HHHHHHHHH--------------------------HcC--CcEEEEECCCCCHHHHHHhhc--cCCEEEEEee----cCC
Q 023494 154 LHRTLNQIK--------------------------DLG--AKAGVVLNPATSLSAIECVLD--VVDLVLIMSV----NPG 199 (281)
Q Consensus 154 i~~~l~~ik--------------------------~~G--~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV----~pG 199 (281)
.+++++.+| ..+ ..+.+.|.....++.+++++. .+|.+.+.+. .-|
T Consensus 106 a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG 185 (256)
T PRK10558 106 ARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALG 185 (256)
T ss_pred HHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcC
Confidence 555544322 222 234444543344567777764 4888887543 234
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccc
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
..++...|+....++++......+|. ...+ ..-+++.++.+++.|++.+++|+.+
T Consensus 186 ~~~~~~~~~v~~a~~~v~~aa~~~G~--~~g~-~~~~~~~~~~~~~~G~~~v~~~~D~ 240 (256)
T PRK10558 186 HLGNASHPDVQKAIQHIFARAKAHGK--PSGI-LAPVEADARRYLEWGATFVAVGSDL 240 (256)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCC--ceEE-cCCCHHHHHHHHHcCCCEEEEchHH
Confidence 44555567777777777777666553 3322 3456788999999999999999653
No 250
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=97.02 E-value=0.032 Score=50.39 Aligned_cols=139 Identities=16% Similarity=0.238 Sum_probs=90.4
Q ss_pred HHHHHHcCcCCCCCeeEEEEecChhhHHHHH--HHcCCCEEEEccccc---------------ccccHHHHHHHHHHcCC
Q 023494 104 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDF--IKAGADIVSVHCEQS---------------STIHLHRTLNQIKDLGA 166 (281)
Q Consensus 104 ~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~--~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~~G~ 166 (281)
.+.++.+++ .+.|+.+.++-.||+.+.+.+ .+.++|.|-+-..+. ..+.+.++++.+|+.++
T Consensus 62 ~~~~~~~~~-~~~p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~ 140 (233)
T cd02911 62 EGEIKALKD-SNVLVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGV 140 (233)
T ss_pred HHHHHHhhc-cCCeEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCC
Confidence 344555544 357899999999998765433 233567777644321 01234788899998888
Q ss_pred cEEEEECCCC--CHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHH
Q 023494 167 KAGVVLNPAT--SLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY 241 (281)
Q Consensus 167 k~Glai~p~t--~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~ 241 (281)
.+.+=+.++. +...+.+.+. .+|.|-+.+ +..|. +..++.|++++ .+++|..-|||+ .+.+.
T Consensus 141 pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~---~~~g~---~ad~~~I~~i~-------~~ipVIgnGgI~s~eda~ 207 (233)
T cd02911 141 PVSVKIRAGVDVDDEELARLIEKAGADIIHVDA---MDPGN---HADLKKIRDIS-------TELFIIGNNSVTTIESAK 207 (233)
T ss_pred CEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECc---CCCCC---CCcHHHHHHhc-------CCCEEEEECCcCCHHHHH
Confidence 8888777665 2333333333 278764432 22221 12245555554 247888899997 99999
Q ss_pred HHHHcCCcEEEEccc
Q 023494 242 KVIEAGANALVAGSA 256 (281)
Q Consensus 242 ~~~~aGAD~~VvGSa 256 (281)
++++.|||.+-+|++
T Consensus 208 ~~l~~GaD~VmiGR~ 222 (233)
T cd02911 208 EMFSYGADMVSVARA 222 (233)
T ss_pred HHHHcCCCEEEEcCC
Confidence 999999999999999
No 251
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.02 E-value=0.012 Score=56.31 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.++-|.++++... .+++|.+||||. ..++-+.+..|||.+-+|+.++.
T Consensus 262 ~~~~l~~i~~a~~---~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~ 310 (351)
T cd04737 262 SFDSLPEIAEAVN---HRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLY 310 (351)
T ss_pred HHHHHHHHHHHhC---CCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 3445555555442 247899999999 66888888999999999998653
No 252
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=97.02 E-value=0.023 Score=51.54 Aligned_cols=193 Identities=21% Similarity=0.285 Sum_probs=115.4
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
.-+.-+....++.+|+|-|-+= --|.- -.-.+-+..||+....++.. -.+-..++++.+.+..+|.+|+-.|
T Consensus 21 ~Pdpv~aA~~a~~aGAdgITvH-----lReDrRHI~d~Dv~~L~~~~~~~lNl--E~a~t~e~~~ia~~~kP~~vtLVPE 93 (239)
T PF03740_consen 21 YPDPVEAARIAEEAGADGITVH-----LREDRRHIQDRDVRRLRELVKTPLNL--EMAPTEEMVDIALKVKPDQVTLVPE 93 (239)
T ss_dssp -S-HHHHHHHHHHTT-SEEEEE-----B-TT-SSS-HHHHHHHHHH-SSEEEE--EEESSHHHHHHHHHH--SEEEEE--
T ss_pred CCCHHHHHHHHHHcCCCEEEec-----cCCCcCcCCHHHHHHHHHHcccCEEe--ccCCCHHHHHHHHhCCcCEEEECCC
Confidence 3455677778889999986442 11221 23456677888776566554 3333355888889999999999977
Q ss_pred cc-------------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccc-----h-
Q 023494 148 QS-------------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFI-----E- 207 (281)
Q Consensus 148 a~-------------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~-----~- 207 (281)
.- ..+.+..+++.+|+.|+++.+.+.|+ .+.++.-.+ .+|+|-+.| |.....|. .
T Consensus 94 ~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~--~~qi~~A~~~Gad~VELhT---G~yA~a~~~~~~~~~ 168 (239)
T PF03740_consen 94 KREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPD--PEQIEAAKELGADRVELHT---GPYANAFDDAEEAEE 168 (239)
T ss_dssp SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEEEEET---HHHHHHSSHHHHHHH
T ss_pred CCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCC--HHHHHHHHHcCCCEEEEeh---hHhhhhcCCHHHHHH
Confidence 42 01248899999999999999999985 444443333 489998754 32222231 1
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEEcccccCC---CCHHHHHHHHHHhcC
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVFGA---KDYAEAIKGIKTSKR 275 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~VvGSaIf~a---~dp~~~~~~l~~~~~ 275 (281)
+.++++....+...+. ++.+....|+|.+|+..+.+. +..-+-+|.+|+.. --.+++++++++.++
T Consensus 169 ell~~l~~aa~~a~~l--GL~VnAGHgL~y~N~~~i~~i~~i~EvnIGHaiia~Al~~Gl~~aV~~m~~~~~ 238 (239)
T PF03740_consen 169 ELLERLRDAARYAHEL--GLGVNAGHGLNYDNVRPIAAIPPIEEVNIGHAIIARALFVGLEEAVREMKELMK 238 (239)
T ss_dssp HHHHHHHHHHHHHHHT--T-EEEEETT--TTTHHHHHTSTTEEEEEE-HHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCEEecCCCCCHHHHHHHHhCCCceEEecCHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 1256677666665554 567889999999999988665 34567889887742 245677888877654
No 253
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.01 E-value=0.0022 Score=57.04 Aligned_cols=79 Identities=13% Similarity=0.273 Sum_probs=56.1
Q ss_pred CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 175 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 175 ~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
.+|++..+.|.+ .+|.+.+...+.-+.|+. ..++.++++++.. +.++.++|||+ .+.+..+.++|||.++
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~---~~~~~i~~i~~~~-----~~pv~~~GGI~~~ed~~~~~~~Ga~~vi 101 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKP---VNLELIEAIVKAV-----DIPVQVGGGIRSLETVEALLDAGVSRVI 101 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCc---ccHHHHHHHHHHC-----CCCEEEcCCcCCHHHHHHHHHcCCCEEE
Confidence 356666666644 378888877743234433 2345555555543 36899999999 7899999999999999
Q ss_pred EcccccCCC
Q 023494 253 AGSAVFGAK 261 (281)
Q Consensus 253 vGSaIf~a~ 261 (281)
+|++++...
T Consensus 102 lg~~~l~~~ 110 (233)
T PRK00748 102 IGTAAVKNP 110 (233)
T ss_pred ECchHHhCH
Confidence 999999643
No 254
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=97.00 E-value=0.027 Score=52.20 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=98.2
Q ss_pred HHHHHH-HHcCCCeEEEEeeeCcccccccCCH---HHHHHcCcCC-------CCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 74 EQVKAV-ELAGCDWIHVDVMDGRFVPNITIGP---LVVDALRPVT-------DLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 74 ~~l~~l-~~~G~d~iHiDImDG~fvpn~~~G~---~~I~~ir~~t-------~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
+.++.| .+.|++.|++ |+| ..++ +.++++.+.. +..+.+ ++.+ .+-++.+.++|++.|
T Consensus 23 ~i~~~L~~~~Gv~~IEv----g~~----~~s~~e~~av~~~~~~~~~~~~~~~~~~~a--~~~~-~~~~~~A~~~g~~~i 91 (280)
T cd07945 23 NIAKILLQELKVDRIEV----ASA----RVSEGEFEAVQKIIDWAAEEGLLDRIEVLG--FVDG-DKSVDWIKSAGAKVL 91 (280)
T ss_pred HHHHHHHHHhCCCEEEe----cCC----CCCHHHHHHHHHHHHHhhhhccccCcEEEE--ecCc-HHHHHHHHHCCCCEE
Confidence 344554 4559998888 654 2355 6666664321 122222 2333 456888999999988
Q ss_pred EEccccc--------------ccccHHHHHHHHHHcCCcEEEEECC-----CCCHHHHHHhhcc-----CCEEEEEeecC
Q 023494 143 SVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLNP-----ATSLSAIECVLDV-----VDLVLIMSVNP 198 (281)
Q Consensus 143 tvh~Ea~--------------~~~~i~~~l~~ik~~G~k~Glai~p-----~t~ie~~~~~l~~-----vD~IlvmsV~p 198 (281)
.+-.-.+ ..+.+.+.++.+++.|+++.+.+.. .++.+.+.++.+. +|.|.+ +
T Consensus 92 ~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l----~ 167 (280)
T cd07945 92 NLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIML----P 167 (280)
T ss_pred EEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEe----c
Confidence 8764221 1122455688899999988776542 3466666665542 666654 2
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
-..|.....++.+.++.+++..+ +.+|++ |-|....|.-..+++||+.+=
T Consensus 168 DT~G~~~P~~v~~l~~~l~~~~~----~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd 221 (280)
T cd07945 168 DTLGILSPFETYTYISDMVKRYP----NLHFDFHAHNDYDLAVANVLAAVKAGIKGLH 221 (280)
T ss_pred CCCCCCCHHHHHHHHHHHHhhCC----CCeEEEEeCCCCCHHHHHHHHHHHhCCCEEE
Confidence 33344344455666777765443 345665 778888899999999999763
No 255
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=97.00 E-value=0.073 Score=50.80 Aligned_cols=179 Identities=17% Similarity=0.184 Sum_probs=106.7
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHH-cCcC-CCCCeeEEEEec------Ch-h----hHHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDA-LRPV-TDLPLDVHLMIV------EP-E----QRVPDF 134 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~-ir~~-t~~~idaHLmv~------dp-~----~~i~~~ 134 (281)
+..+.+..++.+.++|+|-+-. ..-+++. .+.. .+.++.+||=-. +| . .-++.+
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~-------------~~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedA 155 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVAS-------------TLGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDA 155 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEe-------------CHHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHH
Confidence 4458888899999988987532 1224444 2333 346777776432 11 1 137889
Q ss_pred HHcCCCEEEEcccccc------cccHHHHHHHHHHcCCcEEEEECCCCC-----------HHHHHHhhc-----cCCEEE
Q 023494 135 IKAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLNPATS-----------LSAIECVLD-----VVDLVL 192 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~------~~~i~~~l~~ik~~G~k~Glai~p~t~-----------ie~~~~~l~-----~vD~Il 192 (281)
...|||.|.+|.--.+ ..++.++.++++++|+-+.+...|.-+ .+.+..... .+|+|=
T Consensus 156 lrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVK 235 (348)
T PRK09250 156 LRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIK 235 (348)
T ss_pred HHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEE
Confidence 9999999999954321 235677888999999988775544322 222222211 267774
Q ss_pred EEeecCCCCCCccc-----------------hhHHHHHHHHHHHhhhcCCCCeEEEecCCChh------cHHHH---HHc
Q 023494 193 IMSVNPGFGGQSFI-----------------ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK------NAYKV---IEA 246 (281)
Q Consensus 193 vmsV~pG~~GQ~f~-----------------~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e------~i~~~---~~a 246 (281)
+ -.||-.+ .|. ....++++.+.+-+- .| ..++.+.||=+.+ .+..+ +++
T Consensus 236 v--~yp~~~~-~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~-ag-~vpVviAGG~k~~~~e~L~~v~~a~~~i~a 310 (348)
T PRK09250 236 Q--KLPTNNG-GYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCY-MG-RRGLINSGGASKGEDDLLDAVRTAVINKRA 310 (348)
T ss_pred e--cCCCChh-hHHHhhcccccccccccccccchHHHHHHHHHhhc-cC-CceEEEeCCCCCCHHHHHHHHHHHHHhhhc
Confidence 3 2343211 111 112233333332210 00 3578899998732 45567 788
Q ss_pred CCcEEEEcccccCCCCHH
Q 023494 247 GANALVAGSAVFGAKDYA 264 (281)
Q Consensus 247 GAD~~VvGSaIf~a~dp~ 264 (281)
|+..+++|+.||+.++++
T Consensus 311 Ga~Gv~iGRNIfQ~~~~e 328 (348)
T PRK09250 311 GGMGLIIGRKAFQRPMAE 328 (348)
T ss_pred CCcchhhchhhhcCCcHH
Confidence 999999999999998876
No 256
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=97.00 E-value=0.12 Score=46.85 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=116.0
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCC--CCeeEEE--EecChhhHH---HHHHHcCCCE
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD--LPLDVHL--MIVEPEQRV---PDFIKAGADI 141 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~--~~idaHL--mv~dp~~~i---~~~~~aGAd~ 141 (281)
+.+++|+...+ ++|+|+ ||++|-.-=..=..-+.+|++|+...+ .|+-+-+ .-.+|+... ......|+|+
T Consensus 7 v~~~~EA~~a~-~~gaDi--ID~K~P~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~Gvdy 83 (235)
T PF04476_consen 7 VRNVEEAEEAL-AGGADI--IDLKNPAEGALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDY 83 (235)
T ss_pred CCCHHHHHHHH-hCCCCE--EEccCCCCCCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCE
Confidence 35777766555 578998 498882111222446888998887633 5666633 113454322 2235579999
Q ss_pred EEEcccccccccHH-------HHHHHHHHc--CCcEEEEECCCC-------CHHHHHHhhc--cCCEEEEEeecCCCCCC
Q 023494 142 VSVHCEQSSTIHLH-------RTLNQIKDL--GAKAGVVLNPAT-------SLSAIECVLD--VVDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 142 Itvh~Ea~~~~~i~-------~~l~~ik~~--G~k~Glai~p~t-------~ie~~~~~l~--~vD~IlvmsV~pG~~GQ 203 (281)
|-+.... ..+.. .+.+.+++. +.++..++-.+. |.+ +.+++. ..|.+++=|- ..+|.
T Consensus 84 vKvGl~g--~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~-l~~~a~~aG~~gvMlDTa--~Kdg~ 158 (235)
T PF04476_consen 84 VKVGLFG--CKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLD-LPEIAAEAGFDGVMLDTA--DKDGG 158 (235)
T ss_pred EEEecCC--CCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHH-HHHHHHHcCCCEEEEecc--cCCCC
Confidence 9999753 22333 333444443 334433332222 333 333433 3677765433 33343
Q ss_pred c-cchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCH------HHHHHHHHHhc
Q 023494 204 S-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDY------AEAIKGIKTSK 274 (281)
Q Consensus 204 ~-f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp------~~~~~~l~~~~ 274 (281)
. |.-...+.+++..+...++ +......|.++.++++.+...++|++=+=+++....|- .+.++++++.+
T Consensus 159 ~L~d~~~~~~L~~Fv~~ar~~--gL~~aLAGSL~~~di~~L~~l~pD~lGfRGAvC~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 159 SLFDHLSEEELAEFVAQARAH--GLMCALAGSLRFEDIPRLKRLGPDILGFRGAVCGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred chhhcCCHHHHHHHHHHHHHc--cchhhccccCChhHHHHHHhcCCCEEEechhhCCCCCcCccccCHHHHHHHHHhc
Confidence 3 4444466677777666554 46788899999999999999999998777888865221 24666666654
No 257
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=96.99 E-value=0.021 Score=52.63 Aligned_cols=176 Identities=17% Similarity=0.159 Sum_probs=109.7
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
...+.+-..|.||+-+|..-|.|. ..-=...++.++. .+....|.+--.+| .++..+.++||++|.++.-. +.++
T Consensus 30 ~~~E~~a~~GfD~v~iD~EHg~~~--~~~l~~~i~a~~~-~g~~~lVRvp~~~~-~~i~r~LD~GA~GIivP~V~-saee 104 (267)
T PRK10128 30 YMAEIAATSGYDWLLIDGEHAPNT--IQDLYHQLQAIAP-YASQPVIRPVEGSK-PLIKQVLDIGAQTLLIPMVD-TAEQ 104 (267)
T ss_pred HHHHHHHHcCCCEEEEccccCCCC--HHHHHHHHHHHHh-cCCCeEEECCCCCH-HHHHHHhCCCCCeeEecCcC-CHHH
Confidence 445666778999999998888442 1111233444443 34444444433444 36788999999999988543 3455
Q ss_pred HHHHHHHHHHc--C---------------------------CcEEEEECCCCCHHHHHHhhc--cCCEEEEEee----cC
Q 023494 154 LHRTLNQIKDL--G---------------------------AKAGVVLNPATSLSAIECVLD--VVDLVLIMSV----NP 198 (281)
Q Consensus 154 i~~~l~~ik~~--G---------------------------~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV----~p 198 (281)
.+++++.+|=. | ..+.+-|.....++.++++.. .+|.+.+.+. .-
T Consensus 105 A~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~~n~~~I~~~~gvd~i~~G~~Dls~sl 184 (267)
T PRK10128 105 ARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASL 184 (267)
T ss_pred HHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEECHHHHHHHc
Confidence 66666655300 1 112223333334456666544 4788877432 34
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccc
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
|..+|.-.|+..+.++++.+...++|. ...+ ..-+++.++..++.|++.+++|+..
T Consensus 185 g~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~-~~~~~~~a~~~~~~G~~~v~~g~D~ 240 (267)
T PRK10128 185 GYPDNAGHPEVQRIIETSIRRIRAAGK--AAGF-LAVDPDMAQKCLAWGANFVAVGVDT 240 (267)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEE-cCCCHHHHHHHHHcCCcEEEEChHH
Confidence 666777778888888888888877653 3321 2346788999999999999999653
No 258
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=96.99 E-value=0.018 Score=54.67 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=87.7
Q ss_pred HHcCc-CCCCCeeEEEEecC-----hhhHHHHHHHcCCCEEEEccccc-------ccccHH---HHHHHHHHc-CCcEEE
Q 023494 108 DALRP-VTDLPLDVHLMIVE-----PEQRVPDFIKAGADIVSVHCEQS-------STIHLH---RTLNQIKDL-GAKAGV 170 (281)
Q Consensus 108 ~~ir~-~t~~~idaHLmv~d-----p~~~i~~~~~aGAd~Itvh~Ea~-------~~~~i~---~~l~~ik~~-G~k~Gl 170 (281)
+.+|+ .++.|+.+-+-+.. +..+.+.....+||.+-+|.... ...+.. +.++.+++. ++.+++
T Consensus 105 ~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPViv 184 (333)
T TIGR02151 105 EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIV 184 (333)
T ss_pred HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEE
Confidence 45555 47888888665432 22233333345788888885311 011343 667777776 777776
Q ss_pred EECC-CCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc--------------------chhHHHHHHHHHHHhhhcCCCCe
Q 023494 171 VLNP-ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF--------------------IESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 171 ai~p-~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f--------------------~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
=... .+..+..+.+.+ .+|.|.+-+ .+|..| ...+.+.|.++++ ...+++
T Consensus 185 K~~g~g~~~~~a~~L~~aGvd~I~Vsg----~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~----~~~~ip 256 (333)
T TIGR02151 185 KEVGFGISKEVAKLLADAGVSAIDVAG----AGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS----DAPDAP 256 (333)
T ss_pred EecCCCCCHHHHHHHHHcCCCEEEECC----CCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHh----cCCCCe
Confidence 4332 245666665544 489998743 222221 1112333444443 123578
Q ss_pred EEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 229 IEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 229 I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
|.++|||. .+.+.+++..|||.+-+|++++.
T Consensus 257 VIasGGI~~~~di~kaLalGAd~V~igr~~L~ 288 (333)
T TIGR02151 257 IIASGGLRTGLDVAKAIALGADAVGMARPFLK 288 (333)
T ss_pred EEEECCCCCHHHHHHHHHhCCCeehhhHHHHH
Confidence 99999995 88999999999999999999874
No 259
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=96.98 E-value=0.0035 Score=57.37 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=51.0
Q ss_pred CC-HHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEE
Q 023494 176 TS-LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~-ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~Vv 253 (281)
.| ++..+.|.+. ++++-+. +- |.+ +.+ -|+++.+. .+.++++.|||+.++++.++++|||-+++
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvV--DL---g~~-n~~---~i~~i~~~-----~~~~v~vGGGIr~e~v~~~l~aGa~rVvI 103 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVI--ML---GPN-NDD---AAKEALHA-----YPGGLQVGGGINDTNAQEWLDEGASHVIV 103 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEE--EC---CCC-cHH---HHHHHHHh-----CCCCEEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 45 7888887664 6665443 22 333 333 34444433 24689999999999999999999999999
Q ss_pred cccccCC
Q 023494 254 GSAVFGA 260 (281)
Q Consensus 254 GSaIf~a 260 (281)
||++++.
T Consensus 104 GS~av~~ 110 (253)
T TIGR02129 104 TSWLFTK 110 (253)
T ss_pred CcHHHhC
Confidence 9999975
No 260
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=96.98 E-value=0.018 Score=54.70 Aligned_cols=124 Identities=19% Similarity=0.324 Sum_probs=79.1
Q ss_pred HHHHcCCCEEEEccccc--------c----------------cccHHHHHHHHHHc-CC-cEEEEECCCC---------C
Q 023494 133 DFIKAGADIVSVHCEQS--------S----------------TIHLHRTLNQIKDL-GA-KAGVVLNPAT---------S 177 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~--------~----------------~~~i~~~l~~ik~~-G~-k~Glai~p~t---------~ 177 (281)
.+.++|.|+|-+|.-.. + ..-+.++++.+|+. |. .+|+=+++.. .
T Consensus 160 ~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~ 239 (338)
T cd02933 160 NAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDP 239 (338)
T ss_pred HHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCC
Confidence 34678999999996531 0 01255888999974 54 5777676541 2
Q ss_pred HHHHHH---hhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEE
Q 023494 178 LSAIEC---VLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANAL 251 (281)
Q Consensus 178 ie~~~~---~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~ 251 (281)
.++..+ .++ .+|+|-+-. ..+..+. ....++-.+++|+.. ++++.+-|||+++.+.++++.| +|.+
T Consensus 240 ~ee~~~~~~~l~~~g~d~i~vs~--g~~~~~~-~~~~~~~~~~ik~~~-----~ipvi~~G~i~~~~a~~~l~~g~~D~V 311 (338)
T cd02933 240 EATFSYLAKELNKRGLAYLHLVE--PRVAGNP-EDQPPDFLDFLRKAF-----KGPLIAAGGYDAESAEAALADGKADLV 311 (338)
T ss_pred HHHHHHHHHHHHHcCCcEEEEec--CCCCCcc-cccchHHHHHHHHHc-----CCCEEEECCCCHHHHHHHHHcCCCCEE
Confidence 333223 332 278886621 1122222 222344455555543 3688899999999999999987 9999
Q ss_pred EEcccccCCCCHH
Q 023494 252 VAGSAVFGAKDYA 264 (281)
Q Consensus 252 VvGSaIf~a~dp~ 264 (281)
-+|+++...++.-
T Consensus 312 ~~gR~~ladP~~~ 324 (338)
T cd02933 312 AFGRPFIANPDLV 324 (338)
T ss_pred EeCHhhhhCcCHH
Confidence 9999999777654
No 261
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.98 E-value=0.0026 Score=57.44 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=54.8
Q ss_pred CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 175 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 175 ~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
..|++..+.|.+. +|.+.+.-.+.-. |+.-+. +-|+++.+.. ..+++|+|||+ .++++.+.+.|||-+|
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~-~~~~n~---~~i~~i~~~~-----~~~v~vGGGIrs~e~~~~~l~~Ga~kvv 100 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAE-GVGNNE---MYIKEISKIG-----FDWIQVGGGIRDIEKAKRLLSLDVNALV 100 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcC-CCcchH---HHHHHHHhhC-----CCCEEEeCCcCCHHHHHHHHHCCCCEEE
Confidence 3688877777653 7888877666332 433332 3444444321 12799999999 6999999999999999
Q ss_pred EcccccCCC
Q 023494 253 AGSAVFGAK 261 (281)
Q Consensus 253 vGSaIf~a~ 261 (281)
+||..++.+
T Consensus 101 igt~a~~~p 109 (232)
T PRK13586 101 FSTIVFTNF 109 (232)
T ss_pred ECchhhCCH
Confidence 999988643
No 262
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=96.98 E-value=0.047 Score=52.70 Aligned_cols=163 Identities=20% Similarity=0.219 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH-HHHHHcCcCCCCCeeEEEEecC-h-hhHHHHHHHcCCCEEEEccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP-LVVDALRPVTDLPLDVHLMIVE-P-EQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~-~~I~~ir~~t~~~idaHLmv~d-p-~~~i~~~~~aGAd~Itvh~E 147 (281)
.-.+.++.|.+.|++.|++ | .|..+-.. +.++.+++. +.. +-+++-. . .+.++.+.++|++.|.+-.-
T Consensus 27 ~k~~ia~~L~~~GV~~IE~----G--~p~~~~~~~e~i~~i~~~-~~~--~~i~~~~r~~~~di~~a~~~g~~~i~i~~~ 97 (378)
T PRK11858 27 EKLAIARMLDEIGVDQIEA----G--FPAVSEDEKEAIKAIAKL-GLN--ASILALNRAVKSDIDASIDCGVDAVHIFIA 97 (378)
T ss_pred HHHHHHHHHHHhCCCEEEE----e--CCCcChHHHHHHHHHHhc-CCC--eEEEEEcccCHHHHHHHHhCCcCEEEEEEc
Confidence 3345567788899998887 3 36554433 667777653 222 2233322 2 34588889999999888654
Q ss_pred ccc--------------cccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccc
Q 023494 148 QSS--------------TIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 148 a~~--------------~~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~ 206 (281)
..+ .+.+.+.++.+++.|..+.+... ..++.+.+.+++.. +|.|.+ +-..|....
T Consensus 98 ~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l----~DT~G~~~P 173 (378)
T PRK11858 98 TSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRF----CDTVGILDP 173 (378)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEE----eccCCCCCH
Confidence 321 13456688899999998877642 23566666666543 566654 233354444
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
.++.+.++.+++.+ +.+|++ |=|....|.-..+++||+.+
T Consensus 174 ~~v~~lv~~l~~~~-----~~~l~~H~Hnd~GlA~AN~laAv~aGa~~v 217 (378)
T PRK11858 174 FTMYELVKELVEAV-----DIPIEVHCHNDFGMATANALAGIEAGAKQV 217 (378)
T ss_pred HHHHHHHHHHHHhc-----CCeEEEEecCCcCHHHHHHHHHHHcCCCEE
Confidence 45556666666553 356666 66777778888899999976
No 263
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.97 E-value=0.0024 Score=57.25 Aligned_cols=78 Identities=13% Similarity=0.349 Sum_probs=52.3
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++.++.+.+. +|.+.+-..+....+.. ...+.|+++++.. +.++.|+|||+ .+++..+.++|||.+++
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~---~~~~~i~~i~~~~-----~~~l~v~GGi~~~~~~~~~~~~Ga~~v~i 104 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGER---KNAEAIEKIIEAV-----GVPVQLGGGIRSAEDAASLLDLGVDRVIL 104 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCc---ccHHHHHHHHHHc-----CCcEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 466666666543 67776654442222322 2234455554432 46899999999 88999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
|+..++..
T Consensus 105 Gs~~~~~~ 112 (241)
T PRK13585 105 GTAAVENP 112 (241)
T ss_pred ChHHhhCh
Confidence 99998643
No 264
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=96.94 E-value=0.0074 Score=53.85 Aligned_cols=168 Identities=23% Similarity=0.239 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccC-CHHHHHHcCcC-CCCCeeEEEEec--ChhhHHHHHHHcCCCEEEEcc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITI-GPLVVDALRPV-TDLPLDVHLMIV--EPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~-G~~~I~~ir~~-t~~~idaHLmv~--dp~~~i~~~~~aGAd~Itvh~ 146 (281)
...+.++.|.++|+++|++- .|.... ..+.++.+++. ++..+.++.... +...-++.+.++|+|.+.+..
T Consensus 15 ~k~~i~~~L~~~Gv~~iEvg------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~ 88 (237)
T PF00682_consen 15 EKLEIAKALDEAGVDYIEVG------FPFASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRIFI 88 (237)
T ss_dssp HHHHHHHHHHHHTTSEEEEE------HCTSSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEc------ccccCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEecC
Confidence 44566678889999999884 122211 22334444443 445555544431 111225556679999998886
Q ss_pred cccc--------------cccHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHhhcc-----CCEEEEEeecCCCCCCcc
Q 023494 147 EQSS--------------TIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDV-----VDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 147 Ea~~--------------~~~i~~~l~~ik~~G~k~Glai~p~--t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f 205 (281)
...+ .+.+.+.++.+|+.|.++.+.+... ++.+.+.++... +|.|.+- -..|...
T Consensus 89 ~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~----Dt~G~~~ 164 (237)
T PF00682_consen 89 SVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA----DTVGIMT 164 (237)
T ss_dssp ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE----ETTS-S-
T ss_pred cccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee----CccCCcC
Confidence 5432 3357788999999999997766433 466666665443 6777653 1223333
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
...+.+.++.+++.+++ .+|.+ |-|.-..|.-..+++|||.+=
T Consensus 165 P~~v~~lv~~~~~~~~~----~~l~~H~Hnd~Gla~An~laA~~aGa~~id 211 (237)
T PF00682_consen 165 PEDVAELVRALREALPD----IPLGFHAHNDLGLAVANALAALEAGADRID 211 (237)
T ss_dssp HHHHHHHHHHHHHHSTT----SEEEEEEBBTTS-HHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHHHhccC----CeEEEEecCCccchhHHHHHHHHcCCCEEE
Confidence 33445667777776653 45665 778888899999999999963
No 265
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.94 E-value=0.0037 Score=57.43 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=52.0
Q ss_pred CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEE
Q 023494 175 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 175 ~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~Vv 253 (281)
..|++..+.|.+. ++++-+.-... |.+-+ .+-|+++++ . +.+|+|.|||+.+++..++++|||-+|+
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg---g~~~n---~~~i~~i~~-~-----~~~vqvGGGIR~e~i~~~l~~Ga~rVii 110 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA---DDASL---AAALEALRA-Y-----PGGLQVGGGVNSENAMSYLDAGASHVIV 110 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC---CCccc---HHHHHHHHh-C-----CCCEEEeCCccHHHHHHHHHcCCCEEEE
Confidence 4577777776653 56554433332 32222 444555554 2 3689999999999999999999999999
Q ss_pred cccccCC
Q 023494 254 GSAVFGA 260 (281)
Q Consensus 254 GSaIf~a 260 (281)
||..++.
T Consensus 111 gT~Av~~ 117 (262)
T PLN02446 111 TSYVFRD 117 (262)
T ss_pred chHHHhC
Confidence 9999974
No 266
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.92 E-value=0.063 Score=46.69 Aligned_cols=182 Identities=20% Similarity=0.287 Sum_probs=107.9
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeee---CcccccccCCHHHHHHcCcCCCCCeeEEEEec----ChhhH-HHH--HHHc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMD---GRFVPNITIGPLVVDALRPVTDLPLDVHLMIV----EPEQR-VPD--FIKA 137 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImD---G~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~----dp~~~-i~~--~~~a 137 (281)
-+.|.+++++..+ .|+|.+ |+.. |..--|| |.+|++||+.++....+---+- .|+.. ... ++-+
T Consensus 6 SPin~eEA~eAie-GGAdIi--DVKNP~EGSLGANF---PWvIr~i~Ev~p~d~~vSAT~GDvpYKPGT~slAalGaav~ 79 (235)
T COG1891 6 SPINREEAIEAIE-GGADII--DVKNPAEGSLGANF---PWVIREIREVVPEDQEVSATVGDVPYKPGTASLAALGAAVA 79 (235)
T ss_pred ccCCHHHHHHHhh-CCCceE--eccCcccCcccCCC---hHHHHHHHHhCccceeeeeeecCCCCCCchHHHHHHHhHhh
Confidence 3468888888776 689874 7664 4333343 5688888887554333333442 34432 111 3457
Q ss_pred CCCEEEEccccc-----ccccHHHHHHHHHHcCC-cEEEE--------ECCCCCHHHHHHhhc-cCCEEEEEeecCCC-C
Q 023494 138 GADIVSVHCEQS-----STIHLHRTLNQIKDLGA-KAGVV--------LNPATSLSAIECVLD-VVDLVLIMSVNPGF-G 201 (281)
Q Consensus 138 GAd~Itvh~Ea~-----~~~~i~~~l~~ik~~G~-k~Gla--------i~p~t~ie~~~~~l~-~vD~IlvmsV~pG~-~ 201 (281)
|||++-+..-.. ..+-...+.++.|+.+- +..++ ++.-.|+..-+-..+ .+|.+++= .+. +
T Consensus 80 GaDYiKVGLYg~kn~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvD---TaiKD 156 (235)
T COG1891 80 GADYIKVGLYGTKNEEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVD---TAIKD 156 (235)
T ss_pred CCceEEEeecccccHHHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHhcCCCEEEEe---ccccc
Confidence 999999984321 11224455666676654 22222 222223322111122 37888663 333 3
Q ss_pred CCc-cchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 202 GQS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 202 GQ~-f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
|.. |.-...+.+++..++..++| +..+..|.++.|+++.+.+.|+|++=+-++....
T Consensus 157 GkslFdfm~~e~l~eFvd~Ah~hG--L~~AlAGs~~~ehlp~l~eig~DivGvRgaaC~~ 214 (235)
T COG1891 157 GKSLFDFMDEEELEEFVDLAHEHG--LEVALAGSLKFEHLPILKEIGPDIVGVRGAACEG 214 (235)
T ss_pred chhHHhhhcHHHHHHHHHHHHHcc--hHHHhccccccccchHHHHhCCCeeeecchhccC
Confidence 433 44444667777777766654 5677899999999999999999988776777653
No 267
>PRK02227 hypothetical protein; Provisional
Probab=96.91 E-value=0.11 Score=47.09 Aligned_cols=196 Identities=19% Similarity=0.206 Sum_probs=119.0
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCC--CCeeEEEEec----ChhhH---HHHHHHcCC
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD--LPLDVHLMIV----EPEQR---VPDFIKAGA 139 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~--~~idaHLmv~----dp~~~---i~~~~~aGA 139 (281)
+.+++|+...+ ++|+|+ ||++|-.-=..=...+.+|++|+...+ +|+-+ -+- +|... +......|+
T Consensus 7 vr~~eEA~~Al-~~GaDi--IDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSA--tiGD~p~~p~~~~~aa~~~a~~Gv 81 (238)
T PRK02227 7 VRNLEEALEAL-AGGADI--IDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSA--TIGDVPYKPGTISLAALGAAATGA 81 (238)
T ss_pred cCCHHHHHHHH-hcCCCE--EEccCCCCCCCCCCCHHHHHHHHHHhCCCCCcee--eccCCCCCchHHHHHHHHHHhhCC
Confidence 35777766555 578998 498882100112556888998877533 56665 332 34333 334566899
Q ss_pred CEEEEcccccccccHHHHH-------HHHHHc--CCcEEEE-ECCCC-----CHHHHHHhhc--cCCEEEEEeecCCCCC
Q 023494 140 DIVSVHCEQSSTIHLHRTL-------NQIKDL--GAKAGVV-LNPAT-----SLSAIECVLD--VVDLVLIMSVNPGFGG 202 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l-------~~ik~~--G~k~Gla-i~p~t-----~ie~~~~~l~--~vD~IlvmsV~pG~~G 202 (281)
|+|=+.... ..+..+.+ +..+.+ +.++.-+ ..-.. +...+-+++. ..|.+++=|- +.+|
T Consensus 82 DyVKvGl~~--~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa--~Kdg 157 (238)
T PRK02227 82 DYVKVGLYG--GKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTA--IKDG 157 (238)
T ss_pred CEEEEcCCC--CCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecc--cCCC
Confidence 999998652 22233333 333332 4444333 33222 3344555553 3677765332 4455
Q ss_pred Cc-cchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCC------CHHHHHHHHHHhcC
Q 023494 203 QS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK------DYAEAIKGIKTSKR 275 (281)
Q Consensus 203 Q~-f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~------dp~~~~~~l~~~~~ 275 (281)
.. |.-...+.+++..+....+| ......|.++.++++.+...++|++=+=+++.... || +.+.++++.+.
T Consensus 158 ~~Lfd~l~~~~L~~Fv~~ar~~G--l~~gLAGSL~~~dip~L~~l~pD~lGfRgavC~g~dR~~~id~-~~V~~~~~~l~ 234 (238)
T PRK02227 158 KSLFDHMDEEELAEFVAEARSHG--LMSALAGSLKFEDIPALKRLGPDILGVRGAVCGGGDRTGRIDP-ELVAELREALR 234 (238)
T ss_pred cchHhhCCHHHHHHHHHHHHHcc--cHhHhcccCchhhHHHHHhcCCCEEEechhccCCCCcccccCH-HHHHHHHHHhh
Confidence 44 44555677777777766654 56788999999999999999999987778888543 33 45666776665
Q ss_pred c
Q 023494 276 P 276 (281)
Q Consensus 276 ~ 276 (281)
.
T Consensus 235 ~ 235 (238)
T PRK02227 235 A 235 (238)
T ss_pred c
Confidence 4
No 268
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=96.91 E-value=0.045 Score=55.92 Aligned_cols=192 Identities=16% Similarity=0.185 Sum_probs=113.8
Q ss_pred cCHHHHHHHHHHcCCCeEEEE---eeeCcccccccC-CHHHHHHcCcC-CCCCeeEEEEe-------cChh----hHHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVD---VMDGRFVPNITI-GPLVVDALRPV-TDLPLDVHLMI-------VEPE----QRVPD 133 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiD---ImDG~fvpn~~~-G~~~I~~ir~~-t~~~idaHLmv-------~dp~----~~i~~ 133 (281)
.+.....+.+.+.|++.+++- -.|.. .+.... -.+.++.+|+. ++.++...+-= .-|. .+++.
T Consensus 27 ~d~l~ia~~ld~~G~~siE~~GGatf~~~-~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~ 105 (593)
T PRK14040 27 DDMLPIAAKLDKVGYWSLESWGGATFDAC-IRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVER 105 (593)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCcchhhh-ccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHH
Confidence 344555667778899987662 01210 122333 34567777775 66666544421 1122 35778
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEE----EEECCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCc
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAG----VVLNPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~G----lai~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~ 204 (281)
+.++|.|++.+-......+.+...++.+|+.|..+- ....|....+.+.+++.. +|.|.+- -..|..
T Consensus 106 a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~----Dt~G~l 181 (593)
T PRK14040 106 AVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIK----DMAGLL 181 (593)
T ss_pred HHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEEC----CCCCCc
Confidence 889999998776432223567789999999999753 234565556655555442 6777552 233443
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEc----ccccCCCCHHHHHHHHH
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAG----SAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvG----SaIf~a~dp~~~~~~l~ 271 (281)
......+.++.+++.+ +++|.+ |-|....|.-..+++|||++=.- +.-+++.+.+..+..|+
T Consensus 182 ~P~~~~~lv~~lk~~~-----~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG~~~Gn~~le~vv~~L~ 251 (593)
T PRK14040 182 KPYAAYELVSRIKKRV-----DVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMSMTYGHSATETLVATLE 251 (593)
T ss_pred CHHHHHHHHHHHHHhc-----CCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccccccccchhHHHHHHHHH
Confidence 4444556677776654 256665 78888889999999999976322 22233444444444444
No 269
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.91 E-value=0.0028 Score=57.66 Aligned_cols=78 Identities=13% Similarity=0.223 Sum_probs=52.2
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++.++.+.+. +|.+.+.-......++. ..++-++++++.. +.++.++|||+ .+.+.++..+||+.+++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~---~n~~~i~~i~~~~-----~~pv~~~GGi~s~~d~~~~~~~Ga~~viv 102 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRT---TMIDVVERTAETV-----FIPLTVGGGIKSIEDVDKLLRAGADKVSI 102 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccCh---hhHHHHHHHHHhc-----CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 445555555432 66666655543322222 2344455555543 36899999999 99999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
|++.+..+
T Consensus 103 gt~~~~~p 110 (254)
T TIGR00735 103 NTAAVKNP 110 (254)
T ss_pred ChhHhhCh
Confidence 99999643
No 270
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.91 E-value=0.017 Score=54.59 Aligned_cols=124 Identities=18% Similarity=0.242 Sum_probs=77.8
Q ss_pred HHHcCCCEEEEccccc-----------ccc-------------cHHHHHHHHHHc---CCcEEEEECCC------CCHHH
Q 023494 134 FIKAGADIVSVHCEQS-----------STI-------------HLHRTLNQIKDL---GAKAGVVLNPA------TSLSA 180 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~-----------~~~-------------~i~~~l~~ik~~---G~k~Glai~p~------t~ie~ 180 (281)
+.++|.|.|-+|.-.. ... -+.++++.+|+. +..+++-+++. ...+.
T Consensus 163 a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e 242 (336)
T cd02932 163 AVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLED 242 (336)
T ss_pred HHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHH
Confidence 4678999999996320 011 135788888875 45688877753 23433
Q ss_pred HHHhh---c--cCCEEEEEeecCCCCCC---cc-chhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcC-Cc
Q 023494 181 IECVL---D--VVDLVLIMSVNPGFGGQ---SF-IESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAG-AN 249 (281)
Q Consensus 181 ~~~~l---~--~vD~IlvmsV~pG~~GQ---~f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aG-AD 249 (281)
..+++ + .+|+|-+.. .|...+ ++ ....++..+++++.. +++|.+.||| +++.+.++++.| +|
T Consensus 243 ~~~ia~~Le~~gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~ir~~~-----~iPVi~~G~i~t~~~a~~~l~~g~aD 315 (336)
T cd02932 243 SVELAKALKELGVDLIDVSS--GGNSPAQKIPVGPGYQVPFAERIRQEA-----GIPVIAVGLITDPEQAEAILESGRAD 315 (336)
T ss_pred HHHHHHHHHHcCCCEEEECC--CCCCcccccCCCccccHHHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 33332 2 278876421 112211 11 112234445555543 4789999999 599999999998 99
Q ss_pred EEEEcccccCCCCHH
Q 023494 250 ALVAGSAVFGAKDYA 264 (281)
Q Consensus 250 ~~VvGSaIf~a~dp~ 264 (281)
++-+|++++..++..
T Consensus 316 ~V~~gR~~i~dP~~~ 330 (336)
T cd02932 316 LVALGRELLRNPYWP 330 (336)
T ss_pred eehhhHHHHhCccHH
Confidence 999999999866653
No 271
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.90 E-value=0.091 Score=49.99 Aligned_cols=140 Identities=16% Similarity=0.265 Sum_probs=85.4
Q ss_pred EEEEec---Chhh--HHHHHHH--cCCCEEEEcccccccccHHHHHHHHHHcCCcE-EEEECCCCCHHHHHHhhc-cCCE
Q 023494 120 VHLMIV---EPEQ--RVPDFIK--AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA-GVVLNPATSLSAIECVLD-VVDL 190 (281)
Q Consensus 120 aHLmv~---dp~~--~i~~~~~--aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~-Glai~p~t~ie~~~~~l~-~vD~ 190 (281)
-++++. .+.. .++.+.+ +|+|.|++-......+...+.++.+|+.--++ -++=|..|+- ..+.++. .+|.
T Consensus 97 ~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e-~a~~Li~aGAD~ 175 (346)
T PRK05096 97 KHVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGE-MVEELILSGADI 175 (346)
T ss_pred ceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHH-HHHHHHHcCCCE
Confidence 445553 4443 4667777 59999998655432345667888888753233 3344555554 4555555 5897
Q ss_pred EEEEeecCCC--CCCc---c-chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CC
Q 023494 191 VLIMSVNPGF--GGQS---F-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KD 262 (281)
Q Consensus 191 IlvmsV~pG~--~GQ~---f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~d 262 (281)
|-+ ++=||- .-+. + .| .+.-|.+..+... .++.+|..||||. ..++.+.+.+|||.+-+||-+-+. +.
T Consensus 176 vKV-GIGpGSiCtTr~vtGvG~P-QltAV~~~a~~a~--~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~Es 251 (346)
T PRK05096 176 VKV-GIGPGSVCTTRVKTGVGYP-QLSAVIECADAAH--GLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEES 251 (346)
T ss_pred EEE-cccCCccccCccccccChh-HHHHHHHHHHHHH--HcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccC
Confidence 754 444552 1111 1 12 2333444444433 3457899999999 779999999999999999988754 34
Q ss_pred HH
Q 023494 263 YA 264 (281)
Q Consensus 263 p~ 264 (281)
|.
T Consensus 252 PG 253 (346)
T PRK05096 252 GG 253 (346)
T ss_pred CC
Confidence 43
No 272
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.90 E-value=0.053 Score=51.24 Aligned_cols=143 Identities=10% Similarity=0.176 Sum_probs=92.4
Q ss_pred CCCCeeEEEEecChhhHHHH---HHHcCCCEEEEccccc---------------ccccHHHHHHHHHHc-CCcEEEEECC
Q 023494 114 TDLPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNP 174 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~~---~~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~~-G~k~Glai~p 174 (281)
.+.|+.+.|..+||+.+.+. +.+.|+|.|=++.-+. ..+-+.++++.+++. ++.+.+=+..
T Consensus 53 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~ 132 (318)
T TIGR00742 53 EESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRI 132 (318)
T ss_pred CCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35799999999999987553 4467999999986542 011256788888874 6777776654
Q ss_pred CC----CHHHHHHh---hc--cCCEEEEEeecC---CCCCCc---cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hh
Q 023494 175 AT----SLSAIECV---LD--VVDLVLIMSVNP---GFGGQS---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PK 238 (281)
Q Consensus 175 ~t----~ie~~~~~---l~--~vD~IlvmsV~p---G~~GQ~---f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e 238 (281)
.. ..+...++ +. .+|.|.+.+... |++|.. ..|.-++.|.++++... +++|..-|||. .+
T Consensus 133 g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~----~ipVi~NGdI~s~~ 208 (318)
T TIGR00742 133 GIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP----HLTIEINGGIKNSE 208 (318)
T ss_pred CCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC----CCcEEEECCcCCHH
Confidence 32 11222222 22 378775543321 233321 22334566766665432 47888899998 88
Q ss_pred cHHHHHHcCCcEEEEcccccCCC
Q 023494 239 NAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 239 ~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++.++.+ |+|.+-+|++++..+
T Consensus 209 da~~~l~-g~dgVMigRgal~nP 230 (318)
T TIGR00742 209 QIKQHLS-HVDGVMVGREAYENP 230 (318)
T ss_pred HHHHHHh-CCCEEEECHHHHhCC
Confidence 8888875 999999999988644
No 273
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=96.88 E-value=0.024 Score=51.89 Aligned_cols=139 Identities=17% Similarity=0.262 Sum_probs=82.4
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCCCH-----------HHHHHhhccCCE---
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSL-----------SAIECVLDVVDL--- 190 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-----------e~~~~~l~~vD~--- 190 (281)
.+++.++|++++.+. .|- .+.+.+.+=++.+.++|+.+.+-+.-.... +.+...++.++.
T Consensus 79 ~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~ 158 (250)
T PRK00042 79 AEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQF 158 (250)
T ss_pred HHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHHh
Confidence 678899999999885 221 013344444555899999998877522111 112223332221
Q ss_pred -EEEEeecCCC---CCCccchhHHHHH-HHHHHHhhh----cCCCCeEEEecCCChhcHHHH-HHcCCcEEEEcccccCC
Q 023494 191 -VLIMSVNPGF---GGQSFIESQVKKI-SDLRRMCLE----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFGA 260 (281)
Q Consensus 191 -IlvmsV~pG~---~GQ~f~~~~l~kI-~~lr~l~~~----~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaIf~a 260 (281)
=++..-+|-+ +|..-.++-.+.+ +.+|+.+.+ ...+.+|.-.|+|+++|+.++ ...++|++-+|++..+.
T Consensus 159 ~~~vIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~ 238 (250)
T PRK00042 159 ANLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLKA 238 (250)
T ss_pred CCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeech
Confidence 0122346632 3544334333332 233333321 123467889999999999865 67789999999999988
Q ss_pred CCHHHHHHH
Q 023494 261 KDYAEAIKG 269 (281)
Q Consensus 261 ~dp~~~~~~ 269 (281)
+++.+.++.
T Consensus 239 ~~f~~ii~~ 247 (250)
T PRK00042 239 EDFLAIVKA 247 (250)
T ss_pred HHHHHHHHH
Confidence 887766653
No 274
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.84 E-value=0.0058 Score=61.60 Aligned_cols=81 Identities=14% Similarity=0.039 Sum_probs=59.3
Q ss_pred CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh------------hcHH
Q 023494 175 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP------------KNAY 241 (281)
Q Consensus 175 ~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~------------e~i~ 241 (281)
..|++..+.|-+ .+|.+.++-...-..+..-+...++-|+++.+.+ .++++|.|||+. |.++
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-----~ip~~vGGGIr~~~d~~~~~~~~~e~~~ 341 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-----FVPLTVGGGIRDFTDANGRYYSSLEVAS 341 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-----CCCEEEcCCccccccccccccchHHHHH
Confidence 356777777765 4999998877642233333444566676666543 478999999995 6799
Q ss_pred HHHHcCCcEEEEcccccCC
Q 023494 242 KVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 242 ~~~~aGAD~~VvGSaIf~a 260 (281)
.++++|||-+++||+-++.
T Consensus 342 ~~l~~GadkV~i~s~Av~~ 360 (538)
T PLN02617 342 EYFRSGADKISIGSDAVYA 360 (538)
T ss_pred HHHHcCCCEEEEChHHHhC
Confidence 9999999999999987764
No 275
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=96.83 E-value=0.034 Score=52.67 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=78.2
Q ss_pred hHHHHHHHcC--CCEEEEcccccccccHHHHHHHHHHcCCcE-EEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC---
Q 023494 129 QRVPDFIKAG--ADIVSVHCEQSSTIHLHRTLNQIKDLGAKA-GVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--- 201 (281)
Q Consensus 129 ~~i~~~~~aG--Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~-Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~--- 201 (281)
+.+..+.++| +|.|.+-..........+.++++|+.--.+ -+.=|. ...+..+.+.+ .+|.|.+ ++.||..
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV-~t~e~a~~l~~aGad~I~V-~~G~G~~~~t 174 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNV-GTPEAVRELENAGADATKV-GIGPGKVCIT 174 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecC-CCHHHHHHHHHcCcCEEEE-CCCCCccccc
Confidence 3577788988 798887653321234556778888753222 222222 25556666655 4888864 4445431
Q ss_pred ----CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 202 ----GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 202 ----GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
|..+....+.-|.++++.. +.+|..||||. ..++.+++.+|||.+-+|+.+-+.
T Consensus 175 r~~~g~g~~~~~l~ai~ev~~a~-----~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~ 233 (321)
T TIGR01306 175 KIKTGFGTGGWQLAALRWCAKAA-----RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGH 233 (321)
T ss_pred eeeeccCCCchHHHHHHHHHHhc-----CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCc
Confidence 1122222344555555532 36899999999 668889999999999999887653
No 276
>PLN02429 triosephosphate isomerase
Probab=96.82 E-value=0.025 Score=53.32 Aligned_cols=139 Identities=14% Similarity=0.220 Sum_probs=84.8
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCCC-----------HHHHHHhhccCCE--E
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS-----------LSAIECVLDVVDL--V 191 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t~-----------ie~~~~~l~~vD~--I 191 (281)
.+++.++|++++.+. .|- .+.+.+.+=++.+.++|+.+.+-+.-... .+.++..++.++. =
T Consensus 140 a~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~~~ 219 (315)
T PLN02429 140 VEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDN 219 (315)
T ss_pred HHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCcccc
Confidence 678999999999885 221 02334445455588999998887752210 0134444544321 0
Q ss_pred EEEeecCCC---CCCccchhHHHHHH-HHHHHhhh-----cCCCCeEEEecCCChhcHHHHH-HcCCcEEEEcccccCCC
Q 023494 192 LIMSVNPGF---GGQSFIESQVKKIS-DLRRMCLE-----KGVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVFGAK 261 (281)
Q Consensus 192 lvmsV~pG~---~GQ~f~~~~l~kI~-~lr~l~~~-----~~~~~~I~VDGGI~~e~i~~~~-~aGAD~~VvGSaIf~a~ 261 (281)
++..-+|-+ +|+.-.|+-.+.+. .+|+.+.+ ...+++|.-.|+|+++|+.++. +.++|++-+|++..+.+
T Consensus 220 ivIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~diDG~LVGgASL~~~ 299 (315)
T PLN02429 220 IVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGP 299 (315)
T ss_pred eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCCCCEEEeecceecHH
Confidence 123446632 35544444444332 23333321 1235789899999999998764 78999999999999877
Q ss_pred CHHHHHHH
Q 023494 262 DYAEAIKG 269 (281)
Q Consensus 262 dp~~~~~~ 269 (281)
++.+.++.
T Consensus 300 ~F~~Ii~~ 307 (315)
T PLN02429 300 EFATIVNS 307 (315)
T ss_pred HHHHHHHH
Confidence 77665544
No 277
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=96.81 E-value=0.0048 Score=55.07 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=53.8
Q ss_pred CCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
+|++.++.|-+ .++.+.+..++-...++...-.. ++++++.. +.++.++|||+ .+.+..+.++|+|.+++
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~---~~~i~~~~-----~~pv~~~ggi~~~~d~~~~~~~G~~~vil 102 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFEL---ISNLAEEC-----FMPLTVGGGIRSLEDAKKLLSLGADKVSI 102 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHH---HHHHHHhC-----CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 56666666644 37888776665433333333333 44444432 36899999999 78999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
|++++...
T Consensus 103 g~~~l~~~ 110 (232)
T TIGR03572 103 NTAALENP 110 (232)
T ss_pred ChhHhcCH
Confidence 99998643
No 278
>PTZ00333 triosephosphate isomerase; Provisional
Probab=96.81 E-value=0.04 Score=50.55 Aligned_cols=136 Identities=15% Similarity=0.233 Sum_probs=86.6
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCC-------H----HHHHHhhccCCE-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------L----SAIECVLDVVDL- 190 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~-------i----e~~~~~l~~vD~- 190 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+.+.+-+.-... . +.++..++.++.
T Consensus 82 ~~mL~d~G~~~viiGHSERR~~f~E--td~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~ 159 (255)
T PTZ00333 82 AEMLKDLGINWTILGHSERRQYFGE--TNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDE 159 (255)
T ss_pred HHHHHHcCCCEEEECcccccCcCCC--CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 568899999999885 34 3567888888999999999887753210 0 134444443321
Q ss_pred ---EEEEeecCCC---CCCccchhHHHH-HHHHHHHhhh-----cCCCCeEEEecCCChhcHHHH-HHcCCcEEEEcccc
Q 023494 191 ---VLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLE-----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAV 257 (281)
Q Consensus 191 ---IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~-----~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaI 257 (281)
=++..-+|-+ +|+.-.|+..++ .+.+|+.+.+ ...+.+|.-.|+|+++|+.++ ...++|++-+|++.
T Consensus 160 ~~~~iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~as 239 (255)
T PTZ00333 160 AWDNIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGAS 239 (255)
T ss_pred HcceEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEEehHh
Confidence 0123346633 365555544432 3344444332 122478889999999999765 57789999999998
Q ss_pred cCCCCHHHHHHH
Q 023494 258 FGAKDYAEAIKG 269 (281)
Q Consensus 258 f~a~dp~~~~~~ 269 (281)
.+ +++.+-++.
T Consensus 240 l~-~~f~~Ii~~ 250 (255)
T PTZ00333 240 LK-PDFVDIIKS 250 (255)
T ss_pred hh-hhHHHHHHH
Confidence 87 466655543
No 279
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=96.80 E-value=0.022 Score=54.13 Aligned_cols=125 Identities=16% Similarity=0.215 Sum_probs=78.4
Q ss_pred HHHcCCCEEEEcccc--------cc-c---------------ccHHHHHHHHHHc-CCcEEEEECCC------CCHHHHH
Q 023494 134 FIKAGADIVSVHCEQ--------SS-T---------------IHLHRTLNQIKDL-GAKAGVVLNPA------TSLSAIE 182 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea--------~~-~---------------~~i~~~l~~ik~~-G~k~Glai~p~------t~ie~~~ 182 (281)
+.++|.|+|-+|.-. ++ . .-+.++++.+|+. +..+++=+++. ...++..
T Consensus 151 a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~ 230 (337)
T PRK13523 151 AKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYV 230 (337)
T ss_pred HHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHH
Confidence 467899999999652 01 0 0145788888875 56778777763 2344333
Q ss_pred Hh---hc--cCCEEEEEeecCCCC----CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEE
Q 023494 183 CV---LD--VVDLVLIMSVNPGFG----GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANAL 251 (281)
Q Consensus 183 ~~---l~--~vD~IlvmsV~pG~~----GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~ 251 (281)
++ ++ .+|+|-+. .|.. .+.+....++-.+++++.. ++++.+-|+|+ ++.+.++++.| +|.+
T Consensus 231 ~i~~~l~~~gvD~i~vs---~g~~~~~~~~~~~~~~~~~~~~ik~~~-----~ipVi~~G~i~~~~~a~~~l~~g~~D~V 302 (337)
T PRK13523 231 QYAKWMKEQGVDLIDVS---SGAVVPARIDVYPGYQVPFAEHIREHA-----NIATGAVGLITSGAQAEEILQNNRADLI 302 (337)
T ss_pred HHHHHHHHcCCCEEEeC---CCCCCCCCCCCCccccHHHHHHHHhhc-----CCcEEEeCCCCCHHHHHHHHHcCCCChH
Confidence 33 32 27998763 2221 1111111233344455443 46888899996 88999999987 9999
Q ss_pred EEcccccCCCCHHHH
Q 023494 252 VAGSAVFGAKDYAEA 266 (281)
Q Consensus 252 VvGSaIf~a~dp~~~ 266 (281)
-+|+++...++....
T Consensus 303 ~~gR~~iadP~~~~k 317 (337)
T PRK13523 303 FIGRELLRNPYFPRI 317 (337)
T ss_pred HhhHHHHhCccHHHH
Confidence 999999987765433
No 280
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=96.78 E-value=0.071 Score=47.98 Aligned_cols=184 Identities=19% Similarity=0.222 Sum_probs=102.2
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
+..|++.--..-.+.++.+.++|+..+ | -|- -.+.+-.++++..+ .+.-|+.=.=-.+-++.+++ -+
T Consensus 27 ~V~LvAVSK~~~~~~I~~~~~aG~r~f------G---ENrvQe~~~K~~~l~~~~--~i~WHfIG~LQsNK~k~v~~-~~ 94 (228)
T COG0325 27 SVTLVAVSKTVPAEDIREAYEAGQRHF------G---ENRVQEALDKIEALKDLP--DIEWHFIGPLQSNKVKLVAE-NF 94 (228)
T ss_pred cEEEEEEeCCCCHHHHHHHHHcCChhh------c---chHHHHHHHHHHhcCcCC--CeEEEEechhhhhHHHHHHh-hc
Confidence 345566655555577888888888632 3 221 12223333333322 26666643211224444444 34
Q ss_pred CEEEEcccccccccHHHHHHH-HHHcC--CcEEEEECC-------CCCHHHHHHhhcc------CCEEEEEeecCCCCCC
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQ-IKDLG--AKAGVVLNP-------ATSLSAIECVLDV------VDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~-ik~~G--~k~Glai~p-------~t~ie~~~~~l~~------vD~IlvmsV~pG~~GQ 203 (281)
|++ |.-+ ...+...|++ +.+.+ .++-|=+|. +++.+.+..+++. +-+.-+|++.|=....
T Consensus 95 ~~i--hSlD--r~klA~~l~kra~~~~~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~~~~~L~l~GLM~ipp~~~d~ 170 (228)
T COG0325 95 DWI--HSLD--RLKLAKELNKRALELPKPLNVLIQVNISGEESKSGVPPEELDELAQEVQELPNLELRGLMTIPPLTDDP 170 (228)
T ss_pred cee--eecC--HHHHHHHHHHHHHhCCCCceEEEEEecCCccccCCCCHHHHHHHHHHHHhCCCCeEeEEEeeCCCCCCH
Confidence 444 4332 1223333333 34444 566665553 2445666655543 5678899997743333
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCC
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 262 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~d 262 (281)
.-....+.+++++++.+..++..+ -+.-=|.+- ..+..++.||.+|=+||+||++.+
T Consensus 171 ~~~~~~F~~l~~l~~~l~~~~~~~-~~LSMGMS~-D~e~AI~~GaT~VRIGtaiFg~r~ 227 (228)
T COG0325 171 EEIFAVFRKLRKLFDELKAKYPPI-DELSMGMSN-DYEIAIAEGATMVRIGTAIFGARD 227 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-CeecCcCcc-cHHHHHHcCCCEEEEcHHhhCCCC
Confidence 334556778888777776554322 123445553 677889999999999999998754
No 281
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.78 E-value=0.032 Score=53.02 Aligned_cols=131 Identities=17% Similarity=0.255 Sum_probs=81.4
Q ss_pred HHHHHHHcC--CCEEEEcccccccccHHHHHHHHHHcC-CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC--CCC
Q 023494 130 RVPDFIKAG--ADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQ 203 (281)
Q Consensus 130 ~i~~~~~aG--Ad~Itvh~Ea~~~~~i~~~l~~ik~~G-~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~--~GQ 203 (281)
.++.+.++| +|.|.+-......+...+.++++|+.- -..-++=|-.|+- ..+.+++ .+|.|.+ ++=||. +++
T Consensus 111 r~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e-~a~~Li~aGAD~ikV-giGpGSicttR 188 (343)
T TIGR01305 111 KMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGE-MVEELILSGADIVKV-GIGPGSVCTTR 188 (343)
T ss_pred HHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHH-HHHHHHHcCCCEEEE-cccCCCcccCc
Confidence 467788885 999998654332344667788888752 2333333444444 4445544 5898765 555553 233
Q ss_pred ccch---hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 204 SFIE---SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 204 ~f~~---~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
.... -.+.-|.+..+... +++.+|..||||. ..++-+.+.+|||.+-+|+.+-.. +.|.
T Consensus 189 ~~~Gvg~pqltAv~~~a~aa~--~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg 252 (343)
T TIGR01305 189 TKTGVGYPQLSAVIECADAAH--GLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGG 252 (343)
T ss_pred eeCCCCcCHHHHHHHHHHHhc--cCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcc
Confidence 2211 13444555555433 3467899999999 668889999999999999766543 3444
No 282
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=96.77 E-value=0.081 Score=54.08 Aligned_cols=171 Identities=16% Similarity=0.165 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeC-cccccc---cC-CHHHHHHcCcC-CCCCeeEEE----Ee---cChh----hHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDG-RFVPNI---TI-GPLVVDALRPV-TDLPLDVHL----MI---VEPE----QRVPD 133 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~---~~-G~~~I~~ir~~-t~~~idaHL----mv---~dp~----~~i~~ 133 (281)
++......+.++|...+++- -| +|=-.+ .+ -.+.++.+|+. ++.++...+ .+ .-|. .+++.
T Consensus 27 d~~~ia~~~d~~g~~siE~~--gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~ 104 (596)
T PRK14042 27 DMLPICNKMDDVGFWAMEVW--GGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKL 104 (596)
T ss_pred HHHHHHHHHHhcCCCEEEee--CCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHH
Confidence 33444556666787776553 22 121122 22 34567888875 777888766 22 2232 36777
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE----ECCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCc
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV----LNPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla----i~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~ 204 (281)
+.+.|.|.+-+-......+++...++.+|+.|+.+-.+ .+|-..++.+.++++. +|.|.+- -..|..
T Consensus 105 a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~Ik----DtaG~l 180 (596)
T PRK14042 105 AVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIK----DMAGLL 180 (596)
T ss_pred HHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeC----CcccCC
Confidence 88999998877654323567888999999999987655 4566666666655443 6766552 334544
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
....+.+.++.+++.+ +++|.+ +-|....|.-..+++|||+|=
T Consensus 181 ~P~~v~~lv~alk~~~-----~ipi~~H~Hnt~Gla~an~laAieaGad~iD 227 (596)
T PRK14042 181 TPTVTVELYAGLKQAT-----GLPVHLHSHSTSGLASICHYEAVLAGCNHID 227 (596)
T ss_pred CHHHHHHHHHHHHhhc-----CCEEEEEeCCCCCcHHHHHHHHHHhCCCEEE
Confidence 4445566677777653 356666 778888888899999999763
No 283
>PRK15492 triosephosphate isomerase; Provisional
Probab=96.75 E-value=0.024 Score=52.08 Aligned_cols=135 Identities=15% Similarity=0.178 Sum_probs=82.6
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccC--C
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVV--D 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~v--D 189 (281)
.+++.++|++++.+. .|- .+++.+.+-++.+.++|+.+.+-+.- +.+. ++..+..+ |
T Consensus 87 a~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE--~~e~r~~g~~~~v~~~Ql~~~l~~~~~~ 164 (260)
T PRK15492 87 PLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGE--TLEQKNYGISDEILRTQLKIGLHGINPD 164 (260)
T ss_pred HHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCC--cHHHHHcCCHHHHHHHHHHHHHhcCCHh
Confidence 567899999998875 221 02455667788889999998887752 2221 22222222 2
Q ss_pred E--EEEEeecC----CCCCCccch----hHHHHHHHH-HHHhhhcCCCCeEEEecCCChhcHHHHHH-cCCcEEEEcccc
Q 023494 190 L--VLIMSVNP----GFGGQSFIE----SQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAV 257 (281)
Q Consensus 190 ~--IlvmsV~p----G~~GQ~f~~----~~l~kI~~l-r~l~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaI 257 (281)
. =++..-+| |.+|..-.| ++.+.|++. .+++.+...+++|.-.|+|+++|+.++.. ..+|++-+|++=
T Consensus 165 ~~~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~~~N~~~l~~~~diDG~LvG~aS 244 (260)
T PRK15492 165 QLAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVNAENANELFGQPHIDGLFIGRSA 244 (260)
T ss_pred hcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccCHHHHHHHhcCCCCCEEEeehhh
Confidence 1 12234456 554655545 344445543 33333223357888999999999999854 459999999987
Q ss_pred cCCCCHHHHH
Q 023494 258 FGAKDYAEAI 267 (281)
Q Consensus 258 f~a~dp~~~~ 267 (281)
.+.++..+.+
T Consensus 245 l~~~~F~~Ii 254 (260)
T PRK15492 245 WDADKFFAII 254 (260)
T ss_pred cCHHHHHHHH
Confidence 7655444443
No 284
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=96.74 E-value=0.086 Score=48.53 Aligned_cols=183 Identities=14% Similarity=0.213 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHH---HHHcCcC--CCCCeeEEEEecCh------hhHHHHHHHcCC
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV---VDALRPV--TDLPLDVHLMIVEP------EQRVPDFIKAGA 139 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~---I~~ir~~--t~~~idaHLmv~dp------~~~i~~~~~aGA 139 (281)
...+.++.|.++|++.|++ |. |. .++.. ++++++. .+..+.+..+...+ .+.++.+.++|+
T Consensus 21 ~k~~i~~~L~~~Gv~~IE~----G~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~ 92 (273)
T cd07941 21 DKLRIARKLDELGVDYIEG----GW--PG--SNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGT 92 (273)
T ss_pred HHHHHHHHHHHcCCCEEEe----cC--Cc--CCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCCC
Confidence 3446677888999998887 42 21 23333 4444332 13344443322222 235778899999
Q ss_pred CEEEEccccc--------------ccccHHHHHHHHHHcCCcEEE---EEC--CCCCHHHHHHhhc-----cCCEEEEEe
Q 023494 140 DIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGV---VLN--PATSLSAIECVLD-----VVDLVLIMS 195 (281)
Q Consensus 140 d~Itvh~Ea~--------------~~~~i~~~l~~ik~~G~k~Gl---ai~--p~t~ie~~~~~l~-----~vD~Ilvms 195 (281)
+.|.+-.-+. ..+.+.+.++.+|+.|+++.+ .+. +.++.+.+.++.. .+|.|.+
T Consensus 93 ~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l-- 170 (273)
T cd07941 93 PVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVL-- 170 (273)
T ss_pred CEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEE--
Confidence 9887742110 112356788899999998876 331 2345665555543 2676654
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEccccc------CCCCHHH
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVF------GAKDYAE 265 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf------~a~dp~~ 265 (281)
+-..|......+.+.++.+++.++ +.+|++ |=|....|.-..+++||+.+ -+++. ++.+.+.
T Consensus 171 --~DT~G~~~P~~v~~lv~~l~~~~~----~~~l~~H~Hnd~Gla~An~laA~~aGa~~i--d~s~~GlGeraGn~~~e~ 242 (273)
T cd07941 171 --CDTNGGTLPHEIAEIVKEVRERLP----GVPLGIHAHNDSGLAVANSLAAVEAGATQV--QGTINGYGERCGNANLCS 242 (273)
T ss_pred --ecCCCCCCHHHHHHHHHHHHHhCC----CCeeEEEecCCCCcHHHHHHHHHHcCCCEE--EEeccccccccccccHHH
Confidence 233454444555566777776553 245665 77888889999999999975 23332 2345555
Q ss_pred HHHHHH
Q 023494 266 AIKGIK 271 (281)
Q Consensus 266 ~~~~l~ 271 (281)
.+..|+
T Consensus 243 ~~~~L~ 248 (273)
T cd07941 243 IIPNLQ 248 (273)
T ss_pred HHHHHH
Confidence 555553
No 285
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.71 E-value=0.0075 Score=54.68 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=53.7
Q ss_pred CCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++..+.+.. .+|.+.+.....-..++ +..++-|+++++.. ++++.++|||+ .+++.++.+.|+|.+++
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~-----~ipv~~~GGi~s~~~~~~~l~~Ga~~Vii 102 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGR---DTMLDVVERVAEQV-----FIPLTVGGGIRSVEDARRLLRAGADKVSI 102 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccC---cchHHHHHHHHHhC-----CCCEEeeCCCCCHHHHHHHHHcCCCEEEE
Confidence 44555555433 36777766555421222 34455666665543 47899999999 89999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
|+..+..+
T Consensus 103 gt~~l~~p 110 (253)
T PRK02083 103 NSAAVANP 110 (253)
T ss_pred ChhHhhCc
Confidence 99998753
No 286
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=96.71 E-value=0.04 Score=50.45 Aligned_cols=169 Identities=17% Similarity=0.105 Sum_probs=104.6
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcC----CCEEEE
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAG----ADIVSV 144 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aG----Ad~Itv 144 (281)
....+.++.|.++|++.|++ |.|+-+- -..+.++.+++. ++..+.+... .+ .+.++.+.++| ++.|.+
T Consensus 20 ~~k~~i~~~L~~~Gv~~iEv----g~~~~~~-~~~~~~~~l~~~~~~~~~~~l~r-~~-~~~v~~a~~~~~~~~~~~i~i 92 (268)
T cd07940 20 EEKLEIARQLDELGVDVIEA----GFPAASP-GDFEAVKRIAREVLNAEICGLAR-AV-KKDIDAAAEALKPAKVDRIHT 92 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEE----eCCCCCH-HHHHHHHHHHHhCCCCEEEEEcc-CC-HhhHHHHHHhCCCCCCCEEEE
Confidence 34556778888999999888 4433110 012566766653 4455554321 12 23578888888 998888
Q ss_pred ccccc--------------ccccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCC
Q 023494 145 HCEQS--------------STIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 145 h~Ea~--------------~~~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ 203 (281)
..-.. ..+.+.+.++.+|+.|.++.+... +.++.+.+.++.+. +|.|.+ +-..|.
T Consensus 93 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l----~DT~G~ 168 (268)
T cd07940 93 FIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINI----PDTVGY 168 (268)
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEE----CCCCCC
Confidence 64210 023456788899999988776432 23566666665543 566654 233455
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
....++.+.++.+++.++. .+++|.+ |-|....|.-..+++|+++|
T Consensus 169 ~~P~~v~~lv~~l~~~~~~--~~i~l~~H~Hn~~GlA~An~laAi~aG~~~i 218 (268)
T cd07940 169 LTPEEFGELIKKLKENVPN--IKVPISVHCHNDLGLAVANSLAAVEAGARQV 218 (268)
T ss_pred CCHHHHHHHHHHHHHhCCC--CceeEEEEecCCcchHHHHHHHHHHhCCCEE
Confidence 5555666677777765432 1245665 66777778889999999976
No 287
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=96.66 E-value=0.032 Score=53.11 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=88.2
Q ss_pred eeEEEEec--Ch-hhHHHHHHHc-CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEE
Q 023494 118 LDVHLMIV--EP-EQRVPDFIKA-GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVL 192 (281)
Q Consensus 118 idaHLmv~--dp-~~~i~~~~~a-GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Il 192 (281)
+.+.+++. ++ ....+..++. |.-.++++.-. .+.+.++.++..|.++...+- .....+.... -+|.|.
T Consensus 80 v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~----~~~~~i~~~~~~g~~v~~~v~---~~~~A~~~~~~G~d~vI 152 (336)
T COG2070 80 VNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGA----PPAEFVARLKAAGIKVIHSVI---TVREALKAERAGADAVI 152 (336)
T ss_pred chhheecccccchHHhhhhHHhcCCCCEEeccCCC----CcHHHHHHHHHcCCeEEEEeC---CHHHHHHHHhCCCCEEE
Confidence 44555553 22 2345555554 88888888652 267889999999998887652 3444444433 378777
Q ss_pred EEeecCCC-CCC-ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 193 IMSVNPGF-GGQ-SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 193 vmsV~pG~-~GQ-~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
...-+.|- .|. ...+.++.-+.++++.++. +++...|||. .+.+......|||.+-+||.+..
T Consensus 153 ~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~----iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~ 218 (336)
T COG2070 153 AQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG----IPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 218 (336)
T ss_pred ecCCcCCCcCCCCCCCccHHHHHHHHHHHhcC----CCEEEecCccChHHHHHHHHhccHHHHhhhhhhc
Confidence 65544432 232 2255667777787777532 7899999998 77888899999999999988653
No 288
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=96.66 E-value=0.091 Score=52.63 Aligned_cols=182 Identities=17% Similarity=0.113 Sum_probs=95.4
Q ss_pred CceEeEEEeccCcc-CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHH
Q 023494 57 DIIVSPSILSANFA-KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 57 ~~~i~pSila~D~~-~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~ 135 (281)
.++|..=|..+..+ .+.+..+.+.+.|+|+| ||==+...|....=...|+.+++.++.|+-+| +.+|. .++.+.
T Consensus 151 ~~~v~aEI~~a~~l~~i~~~A~~~~~~GADII--DIG~~st~p~~~~v~~~V~~l~~~~~~pISID--T~~~~-v~eaAL 225 (499)
T TIGR00284 151 PLRVVAEIPPTVAEDGIEGLAARMERDGADMV--ALGTGSFDDDPDVVKEKVKTALDALDSPVIAD--TPTLD-ELYEAL 225 (499)
T ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHCCCCEE--EECCCcCCCcHHHHHHHHHHHHhhCCCcEEEe--CCCHH-HHHHHH
Confidence 45666666655443 24455566678899885 44333333421111245666666556665553 34444 677788
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECC-CCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP-ATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p-~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
++|||+|-=- . .....+.+..++++|..+.+.-.. ....+.+.+.++. ++-|. ++||++-+.+ ..
T Consensus 226 ~aGAdiINsV-s---~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~II---lDPglg~~~~--~l 296 (499)
T TIGR00284 226 KAGASGVIMP-D---VENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVA---ADPSLSPPLL--GL 296 (499)
T ss_pred HcCCCEEEEC-C---ccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEE---EeCCCCcchH--HH
Confidence 8999987622 2 223556777788888776554322 2233434443332 43333 4999864433 24
Q ss_pred HHHHHHHHHHhhhcCCCCeEEE-ecCC-----------ChhcHHHHHHcCCcEEEEc
Q 023494 210 VKKISDLRRMCLEKGVNPWIEV-DGGV-----------GPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~V-DGGI-----------~~e~i~~~~~aGAD~~VvG 254 (281)
++.|.+++.+....+ +++-+ -|.+ |.--...+.+.|++++=+=
T Consensus 297 ~~sL~~l~~~r~~~~--~Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga~ilrvh 351 (499)
T TIGR00284 297 LESIIRFRRASRLLN--VPLVFGAANVTELVDADSHGVNALLAAIALEAGASILYVV 351 (499)
T ss_pred HHHHHHHHHHHHhcC--CcEEEeeccccCCCccchhHHHHHHHHHHHHcCCCEEEEc
Confidence 455555554432222 34311 2233 2222245677788866543
No 289
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=96.64 E-value=0.0031 Score=56.62 Aligned_cols=80 Identities=19% Similarity=0.349 Sum_probs=53.5
Q ss_pred CCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 174 PATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 174 p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
...|++..+.|.. .+|.+.+.-.+.-..|. +..++-|+++.+.. ..+++|+|||+ .+.+..+.++||+-+
T Consensus 28 ~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~---~~n~~~i~~i~~~~-----~~~i~vgGGIrs~ed~~~ll~~Ga~~V 99 (229)
T PF00977_consen 28 SGDPVEVAKAFNEQGADELHIVDLDAAKEGR---GSNLELIKEIAKET-----GIPIQVGGGIRSIEDAERLLDAGADRV 99 (229)
T ss_dssp CCCHHHHHHHHHHTT-SEEEEEEHHHHCCTH---HHHHHHHHHHHHHS-----SSEEEEESSE-SHHHHHHHHHTT-SEE
T ss_pred CcCHHHHHHHHHHcCCCEEEEEEccCcccCc---hhHHHHHHHHHhcC-----CccEEEeCccCcHHHHHHHHHhCCCEE
Confidence 3457777766633 47777776554322332 33445556555543 36899999999 788999999999999
Q ss_pred EEcccccCCC
Q 023494 252 VAGSAVFGAK 261 (281)
Q Consensus 252 VvGSaIf~a~ 261 (281)
|+||+.+...
T Consensus 100 vigt~~~~~~ 109 (229)
T PF00977_consen 100 VIGTEALEDP 109 (229)
T ss_dssp EESHHHHHCC
T ss_pred EeChHHhhch
Confidence 9999988654
No 290
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.63 E-value=0.098 Score=48.37 Aligned_cols=137 Identities=20% Similarity=0.106 Sum_probs=83.3
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeC-------cccccccCCHHHHHHcCcCCCCCeeEEEEec--Ch
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDG-------RFVPNITIGPLVVDALRPVTDLPLDVHLMIV--EP 127 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG-------~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~--dp 127 (281)
...+.+||...+..++.+..+.++++|+|.|++-+.-- .|..+..+-.++++++|+.+++|+.+.|=.. +.
T Consensus 89 ~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~ 168 (296)
T cd04740 89 GTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDI 168 (296)
T ss_pred CCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhH
Confidence 45688999988888889999999999999988864310 1111112233568888887788888764211 23
Q ss_pred hhHHHHHHHcCCCEEEEc---------cccc-----------ccc----cHHHHHHHHHHc-CCcEEEEECCCCCHHHHH
Q 023494 128 EQRVPDFIKAGADIVSVH---------CEQS-----------STI----HLHRTLNQIKDL-GAKAGVVLNPATSLSAIE 182 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh---------~Ea~-----------~~~----~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~ 182 (281)
.++.+.+.++|+|.++++ .+.. +.. ...+.++.+++. ++. -+...-=+..+.+.
T Consensus 169 ~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ip-ii~~GGI~~~~da~ 247 (296)
T cd04740 169 VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIP-IIGVGGIASGEDAL 247 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCC-EEEECCCCCHHHHH
Confidence 345667788999999874 2210 000 012556666653 332 22322224556666
Q ss_pred Hhhc-cCCEEEEE
Q 023494 183 CVLD-VVDLVLIM 194 (281)
Q Consensus 183 ~~l~-~vD~Ilvm 194 (281)
+++. .+|.|.+.
T Consensus 248 ~~l~~GAd~V~ig 260 (296)
T cd04740 248 EFLMAGASAVQVG 260 (296)
T ss_pred HHHHcCCCEEEEc
Confidence 6654 58988763
No 291
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=96.62 E-value=0.11 Score=50.00 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCccccccc-CCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNIT-IGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~-~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
+-.+.++.|.+.|+++|++ |. |..+ --.+.++.+.+. .+..+.++.. .+ .+.++.+.++|++.|.+..-.
T Consensus 23 ~k~~ia~~L~~~Gv~~IEv----G~--p~~~~~~~e~i~~i~~~~~~~~v~~~~r-~~-~~di~~a~~~g~~~i~i~~~~ 94 (363)
T TIGR02090 23 QKVEIARKLDELGVDVIEA----GF--PIASEGEFEAIKKISQEGLNAEICSLAR-AL-KKDIDKAIDCGVDSIHTFIAT 94 (363)
T ss_pred HHHHHHHHHHHcCCCEEEE----eC--CCCChHHHHHHHHHHhcCCCcEEEEEcc-cC-HHHHHHHHHcCcCEEEEEEcC
Confidence 3345567788899999887 43 2221 113445555543 2233443332 12 235888999999998884322
Q ss_pred c--------------ccccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccch
Q 023494 149 S--------------STIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 149 ~--------------~~~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~ 207 (281)
. ..+.+.+.++.+|+.|+++.+.+. ..++.+.+.++... +|.|.+- -..|.....
T Consensus 95 Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~----DT~G~~~P~ 170 (363)
T TIGR02090 95 SPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIA----DTVGVLTPQ 170 (363)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEe----CCCCccCHH
Confidence 1 013355788889999998877643 33566666665443 6766542 233444444
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
++.+.++.+++.. +++|++ |-|....|.-..+++||+.+
T Consensus 171 ~v~~li~~l~~~~-----~~~l~~H~Hnd~GlA~AN~laA~~aGa~~v 213 (363)
T TIGR02090 171 KMEELIKKLKENV-----KLPISVHCHNDFGLATANSIAGVKAGAEQV 213 (363)
T ss_pred HHHHHHHHHhccc-----CceEEEEecCCCChHHHHHHHHHHCCCCEE
Confidence 4555666665543 245665 77888888889999999975
No 292
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.60 E-value=0.11 Score=51.02 Aligned_cols=149 Identities=21% Similarity=0.307 Sum_probs=86.1
Q ss_pred HHHHHcCcC-C-CCCeeEEEEec--Chh---hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcE---------
Q 023494 105 LVVDALRPV-T-DLPLDVHLMIV--EPE---QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA--------- 168 (281)
Q Consensus 105 ~~I~~ir~~-t-~~~idaHLmv~--dp~---~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~--------- 168 (281)
+.|+++|+. + +.|+-+.|++. +|. .+++.+.+.|+..|.....-.... .+...|..|++.
T Consensus 55 ~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~~~p----~~~~~r~~G~~~~~~g~~~~~ 130 (418)
T cd04742 55 QAIERIQAALGNGEPYGVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAFMQLTP----ALVRYRAKGLRRDADGRVQIA 130 (418)
T ss_pred HHHHHHHHhccCCCCeEEeeecCCCCchhHHHHHHHHHHcCCCEEEeccccCCCc----chhhHHhcCCccccccccccc
Confidence 345666763 6 78999999873 332 367788899999887764211111 123556666641
Q ss_pred --EEE-E-CCCC--------CHHHHHHhhc----------------cCCEEEEEeecCCC-CCCccchhHHHHHHHHHHH
Q 023494 169 --GVV-L-NPAT--------SLSAIECVLD----------------VVDLVLIMSVNPGF-GGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 169 --Gla-i-~p~t--------~ie~~~~~l~----------------~vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~lr~l 219 (281)
.+. + .|.. |-+.++.+.. .+|.|.+- .+.|- .|+.-....+..|.++++.
T Consensus 131 ~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~ 209 (418)
T cd04742 131 NRIIAKVSRPEVAEAFMSPAPERILKKLLAEGKITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDE 209 (418)
T ss_pred ceEEEecCChhhhhhhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHH
Confidence 111 1 1100 1112222221 15888775 45432 2332222334556565554
Q ss_pred hh-hcCC--CCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 220 CL-EKGV--NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 220 ~~-~~~~--~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+. +.++ .++|...|||. .+.+......|||.+.+||...
T Consensus 210 v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fl 252 (418)
T cd04742 210 LAARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQ 252 (418)
T ss_pred HhhccccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHH
Confidence 42 1111 47899999996 8899999999999999998865
No 293
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.59 E-value=0.051 Score=47.99 Aligned_cols=137 Identities=22% Similarity=0.255 Sum_probs=89.3
Q ss_pred CCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEee--------e---CcccccccCCHHHHHHcCcCCCCCeeEEEE
Q 023494 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVM--------D---GRFVPNITIGPLVVDALRPVTDLPLDVHLM 123 (281)
Q Consensus 55 ~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDIm--------D---G~fvpn~~~G~~~I~~ir~~t~~~idaHLm 123 (281)
.....+.++|...|+.++.+..+.+.++|.|.|++-.- | |....+..+-.++++++|+..+.++.+.+-
T Consensus 52 ~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r 131 (231)
T cd02801 52 PEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIR 131 (231)
T ss_pred ccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 34567999999999999999999999999998766421 1 111223445567788888766667777554
Q ss_pred ec-----ChhhHHHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHhhc--cCCE
Q 023494 124 IV-----EPEQRVPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD--VVDL 190 (281)
Q Consensus 124 v~-----dp~~~i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~G~k~Glai~p~-t~ie~~~~~l~--~vD~ 190 (281)
.. +..++++.+.++|+|++++|.-.. ...++ +.++.+++. .++-+..+-+ +..+.+.+++. .+|.
T Consensus 132 ~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~-~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~ 209 (231)
T cd02801 132 LGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADW-DYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDG 209 (231)
T ss_pred eccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCH-HHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCE
Confidence 32 233567778899999999997421 01122 455666664 2333444433 45667777766 3888
Q ss_pred EEE
Q 023494 191 VLI 193 (281)
Q Consensus 191 Ilv 193 (281)
|.+
T Consensus 210 V~i 212 (231)
T cd02801 210 VMI 212 (231)
T ss_pred EEE
Confidence 876
No 294
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.58 E-value=0.0092 Score=53.70 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=57.1
Q ss_pred CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 175 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 175 ~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
..|++..+.|.+. +|.+.+.-.+. ..|..-. ++-|+++.+.. ..+++++|||+ .|++..++.+||+-+|
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~-~~~~~~n---~~~i~~i~~~~-----~~~v~vgGGir~~edv~~~l~~Ga~~vi 105 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDA-IMGRGDN---DEAIRELAAAW-----PLGLWVDGGIRSLENAQEWLKRGASRVI 105 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCcc-ccCCCcc---HHHHHHHHHhC-----CCCEEEecCcCCHHHHHHHHHcCCCeEE
Confidence 4577777666553 77777665552 2232222 33444444432 36899999999 6999999999999999
Q ss_pred EcccccCCCCHHHHHHHH
Q 023494 253 AGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 253 vGSaIf~a~dp~~~~~~l 270 (281)
+||.-++.+-.++.++++
T Consensus 106 igt~~~~~~~~~~~~~~~ 123 (233)
T cd04723 106 VGTETLPSDDDEDRLAAL 123 (233)
T ss_pred EcceeccchHHHHHHHhc
Confidence 999988652223444444
No 295
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=96.57 E-value=0.048 Score=47.02 Aligned_cols=158 Identities=22% Similarity=0.314 Sum_probs=98.1
Q ss_pred chhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCC-eEEEEeeeCcccccccCCHHHHHHcCcCCCCCe
Q 023494 40 IQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCD-WIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118 (281)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d-~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~i 118 (281)
+-|-+++.+..|.+=+.+..+. ++|-.+..++.+-++.+.+.|-. ++|+|..+| ..|-.++.+++++
T Consensus 6 iipAv~~~~~le~~les~~~~v-flL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~G--l~~~e~~i~fi~~--------- 73 (181)
T COG1954 6 IIPAVRDNKDLEKALESESQYV-FLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEG--LSNDEVAIEFIKE--------- 73 (181)
T ss_pred chHHHhhHHHHHHHhcCCCeEE-EEEechhhhHHHHHHHHHhCCcEEEEEeHHhcc--cCCchHHHHHHHH---------
Confidence 3445555666666666555443 56778999999999999887743 589998888 3444444444432
Q ss_pred eEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHhhc--cCCEEEEE
Q 023494 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD--VVDLVLIM 194 (281)
Q Consensus 119 daHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl--ai~p~t~ie~~~~~l~--~vD~Ilvm 194 (281)
+.++|+|. + +-...+..+|++|+.+.- .+-.+..++.....+. .+|.|-+|
T Consensus 74 -----------------~~~pdGII------S--Tk~~~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvL 128 (181)
T COG1954 74 -----------------VIKPDGII------S--TKSNVIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVL 128 (181)
T ss_pred -----------------hccCCeeE------E--ccHHHHHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEc
Confidence 12355553 1 123467788888887753 3333345555444444 48999776
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-C-hhcHHHHHHcCCcEE
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-G-PKNAYKVIEAGANAL 251 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~-~e~i~~~~~aGAD~~ 251 (281)
|| ..|..+++|. +. .+.+| +.||. . .|.+.+.+++||-.+
T Consensus 129 ---PG-----v~Pkvi~~i~---~~-----t~~pi-IAGGLi~t~Eev~~Al~aGA~av 170 (181)
T COG1954 129 ---PG-----VMPKVIKEIT---EK-----THIPI-IAGGLIETEEEVREALKAGAVAV 170 (181)
T ss_pred ---Cc-----ccHHHHHHHH---Hh-----cCCCE-EeccccccHHHHHHHHHhCcEEE
Confidence 76 4555554443 22 34677 56665 4 779999999998655
No 296
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.54 E-value=0.0095 Score=54.13 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=32.3
Q ss_pred CeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCC
Q 023494 227 PWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD 262 (281)
Q Consensus 227 ~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~d 262 (281)
.+++|+|||+ .+.+..+.++|||-+|+||..++.++
T Consensus 75 ~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~ 111 (243)
T TIGR01919 75 VVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPW 111 (243)
T ss_pred CCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHH
Confidence 5899999999 88999999999999999999886443
No 297
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=96.54 E-value=0.009 Score=51.79 Aligned_cols=140 Identities=25% Similarity=0.377 Sum_probs=82.4
Q ss_pred EEEeccCccCHHHHHHHHHHcCC-CeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGC-DWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGAD 140 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~-d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd 140 (281)
-.++..|..+|.+.++.+.+.|- =++|+|..+| ++-....++.|++.. ++|
T Consensus 23 vfLl~g~I~~l~~~v~~~~~~gK~vfVHiDli~G-----l~~D~~~i~~L~~~~-----------------------~~d 74 (175)
T PF04309_consen 23 VFLLTGDIGNLKDIVKRLKAAGKKVFVHIDLIEG-----LSRDEAGIEYLKEYG-----------------------KPD 74 (175)
T ss_dssp EEE-SEECCCHHHHHHHHHHTT-EEEEECCGEET-----B-SSHHHHHHHHHTT-------------------------S
T ss_pred EEEEcCcHHHHHHHHHHHHHcCCEEEEEehhcCC-----CCCCHHHHHHHHHcC-----------------------CCc
Confidence 45777999999999999998873 3589999998 333334444443321 256
Q ss_pred EEEEcccccccccHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 141 ~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl--ai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+|. ++ -...++.+|+.|+.... .+-.+..++.-.+.+. .+|+|-+| || ..|..++++
T Consensus 75 GII------ST--k~~~i~~Ak~~gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEil---Pg-----~~p~vi~~i--- 135 (175)
T PF04309_consen 75 GII------ST--KSNLIKRAKKLGLLTIQRIFLIDSSALETGIKQIEQSKPDAVEIL---PG-----VMPKVIKKI--- 135 (175)
T ss_dssp EEE------ES--SHHHHHHHHHTT-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEE---SC-----CHHHHHCCC---
T ss_pred EEE------eC--CHHHHHHHHHcCCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEc---hH-----HHHHHHHHH---
Confidence 553 11 23467888888877653 3333334444444443 48999988 66 334443332
Q ss_pred HHHhhhcCCCCeEEEecCC-C-hhcHHHHHHcCCcEEEEc
Q 023494 217 RRMCLEKGVNPWIEVDGGV-G-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI-~-~e~i~~~~~aGAD~~VvG 254 (281)
++ ..+++| +.||. . .|.+.+++++||+.+-..
T Consensus 136 ~~-----~~~~Pi-IAGGLI~~~e~v~~al~aGa~aVSTS 169 (175)
T PF04309_consen 136 RE-----ETNIPI-IAGGLIRTKEDVEEALKAGADAVSTS 169 (175)
T ss_dssp CC-----CCSS-E-EEESS--SHHHHHHHCCTTCEEEEE-
T ss_pred HH-----hcCCCE-EeecccCCHHHHHHHHHcCCEEEEcC
Confidence 22 235677 45554 4 889999999999987654
No 298
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.51 E-value=0.009 Score=53.71 Aligned_cols=77 Identities=16% Similarity=0.259 Sum_probs=50.5
Q ss_pred CHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 177 SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 177 ~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
+.+.++.+.+. +|.+.+..+.....++ +..++-++++++.. ++++.++|||+ .+.+..+.+.|+|.+++|
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~~~~~~---~~~~~~i~~i~~~~-----~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITASSEGR---ETMLDVVERVAEEV-----FIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCcccccC---cccHHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 44444443332 5666655554322222 22344555555543 36899999999 789999999999999999
Q ss_pred ccccCCC
Q 023494 255 SAVFGAK 261 (281)
Q Consensus 255 SaIf~a~ 261 (281)
++++..+
T Consensus 101 ~~~~~~p 107 (243)
T cd04731 101 SAAVENP 107 (243)
T ss_pred chhhhCh
Confidence 9999744
No 299
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=96.50 E-value=0.033 Score=53.40 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhcC-CCCeEEEecCCChhcHHHHHHcC--CcEEEEcccccCC
Q 023494 210 VKKISDLRRMCLEKG-VNPWIEVDGGVGPKNAYKVIEAG--ANALVAGSAVFGA 260 (281)
Q Consensus 210 l~kI~~lr~l~~~~~-~~~~I~VDGGI~~e~i~~~~~aG--AD~~VvGSaIf~a 260 (281)
.+.++++|+.+++.+ .++.|.+.||||++++.++.++| +|++=||+.|.+.
T Consensus 263 ~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~ 316 (352)
T PRK07188 263 PELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI 316 (352)
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence 344566677777766 67889999999999999999999 7999999999874
No 300
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=96.47 E-value=0.063 Score=47.49 Aligned_cols=175 Identities=14% Similarity=0.165 Sum_probs=99.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
|+.++. +.+.+.|++.+ -|.|-.++.-..-..++++++....+..+|+ =+.|-+.+-..+.. ++...+..|
T Consensus 37 dP~eia---~~lr~rgar~v--YiADLdaI~g~g~n~d~i~~l~~~~~~ivD~--Gv~dL~s~~~~l~~--~~~~vv~TE 107 (229)
T COG1411 37 DPLEIA---EALRERGARFV--YIADLDAILGGGDNADTIRELSSLEKVIVDV--GVRDLESHAHRLIP--AETAVVGTE 107 (229)
T ss_pred ChHHHH---HHHhhccCceE--EeeehHHHhcCCCcHHHHHHHHhhhhheeec--ccccccCHHHhcCC--Ccceeeccc
Confidence 555554 45566788875 5666555544445678888886654444444 44554444333333 455556666
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEC------CC--CCHHHHHHhh--ccCCEEEEEeecCCCCCCc-cchhHHHHHHHH
Q 023494 148 QSSTIHLHRTLNQIKDLGAKAGVVLN------PA--TSLSAIECVL--DVVDLVLIMSVNPGFGGQS-FIESQVKKISDL 216 (281)
Q Consensus 148 a~~~~~i~~~l~~ik~~G~k~Glai~------p~--t~ie~~~~~l--~~vD~IlvmsV~pG~~GQ~-f~~~~l~kI~~l 216 (281)
.. +..+.-++.-+-+++.++ +. ..+|..+.+. +..+.|.+ .+.. .+-|+ |.++.+.++..+
T Consensus 108 t~------e~~e~~e~~r~vvslD~k~~~Ll~~~~ed~le~Vk~l~~~~~~~lIvL-Di~a-VGt~~G~~~E~l~~~~~~ 179 (229)
T COG1411 108 TL------EDTEEDEEGRIVVSLDVKGGELLGPWLEDFLETVKDLNYRRDPGLIVL-DIGA-VGTKSGPDYELLTKVLEL 179 (229)
T ss_pred hh------hhhhhhhccceEEEEecCCCeecCCCchhHHHHHHHHhccCCCCeEEE-Eccc-cccccCCCHHHHHHHHHh
Confidence 32 122333332344555543 22 2223333321 23455543 3321 12233 777777666543
Q ss_pred HHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~ 267 (281)
.. -++.+.|||. +|.+..+...|++.+.+|++|++-..|-+..
T Consensus 180 s~--------~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~ 223 (229)
T COG1411 180 SE--------HPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVE 223 (229)
T ss_pred cc--------CceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHHH
Confidence 21 2677999999 8888888889999999999999887776544
No 301
>PRK15108 biotin synthase; Provisional
Probab=96.43 E-value=0.5 Score=45.10 Aligned_cols=197 Identities=15% Similarity=0.192 Sum_probs=110.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccc---cccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVP---NITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp---n~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
++..+.+..+.+.+.|++.+++- .-|. -| .+.+=.++++.+|+. +..+.+.+-..+ .+.++.+.++|+|.+.+
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i~-~~g~-~p~~~~~e~i~~~i~~ik~~-~i~v~~s~G~ls-~e~l~~LkeAGld~~n~ 152 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCMG-AAWK-NPHERDMPYLEQMVQGVKAM-GLETCMTLGTLS-ESQAQRLANAGLDYYNH 152 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE-ecCC-CCCcchHHHHHHHHHHHHhC-CCEEEEeCCcCC-HHHHHHHHHcCCCEEee
Confidence 33455555566667899988662 1111 12 234445667777753 344434333333 45778899999999888
Q ss_pred ccccc-----------ccccHHHHHHHHHHcCCcEE--EEECCCCCHHHHHHhhc-------cCCEEEEEeec--CCCC-
Q 023494 145 HCEQS-----------STIHLHRTLNQIKDLGAKAG--VVLNPATSLSAIECVLD-------VVDLVLIMSVN--PGFG- 201 (281)
Q Consensus 145 h~Ea~-----------~~~~i~~~l~~ik~~G~k~G--lai~p~t~ie~~~~~l~-------~vD~IlvmsV~--pG~~- 201 (281)
-.|+. +.++.-++++.+++.|++++ +.+......++..+.+. .++.|-+.-.. ||..
T Consensus 153 ~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl 232 (345)
T PRK15108 153 NLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPL 232 (345)
T ss_pred ccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCC
Confidence 66642 11234467777778898775 45555544433333221 24566554343 3542
Q ss_pred -CCc-cc-hhHHHHHHHHHHHhhhcCCCCeEEEecCCC---hhcHHHHHHcCCcEEEEccc-ccCCC-CHHHHHHHHHH
Q 023494 202 -GQS-FI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG---PKNAYKVIEAGANALVAGSA-VFGAK-DYAEAIKGIKT 272 (281)
Q Consensus 202 -GQ~-f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~---~e~i~~~~~aGAD~~VvGSa-If~a~-dp~~~~~~l~~ 272 (281)
+.+ .. .+.+..|.-.|=++++ ..|-+.||-. .+.-.....+|||.+++|-. +.... ++++-.+-+++
T Consensus 233 ~~~~~~~~~e~lr~iAi~Rl~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i~~ 307 (345)
T PRK15108 233 ADNDDVDAFDFIRTIAVARIMMPT----SYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRK 307 (345)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC----ceeeecccHhHhChhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHHHH
Confidence 221 12 2335556655655543 3466677762 44567889999999999986 44433 44444444443
No 302
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=96.42 E-value=0.22 Score=49.46 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeC-cccccc---cC-CHHHHHHcCcC-CCCCeeEEEEecC-------hh----hHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDG-RFVPNI---TI-GPLVVDALRPV-TDLPLDVHLMIVE-------PE----QRVPD 133 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~---~~-G~~~I~~ir~~-t~~~idaHLmv~d-------p~----~~i~~ 133 (281)
++......+.++|...+++- =| +|--.+ .. -.+.++.+|+. ++.++-..+--.| |. .|++.
T Consensus 36 d~l~ia~~ld~~G~~siE~w--GGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~ 113 (468)
T PRK12581 36 DMLPVLTILDKIGYYSLECW--GGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISL 113 (468)
T ss_pred HHHHHHHHHHhcCCCEEEec--CCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHH
Confidence 34445556667788887764 22 222111 22 24557888775 6677776555433 22 35777
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE----ECCCCCHHHHHHhhc-----cCCEEEEEeecCCCCCCc
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV----LNPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla----i~p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~ 204 (281)
+.+.|.|.+-+-......+.+...++.+|+.|..+.++ .+|...++.+.++.+ .+|.|.+- -..|..
T Consensus 114 a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~Ik----DtaG~l 189 (468)
T PRK12581 114 SAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIK----DMAGIL 189 (468)
T ss_pred HHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEC----CCCCCc
Confidence 88999998877654323567889999999999986544 455554544444433 26777552 334544
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
....+.+.++.+++. .+++|.+ +-|....|.-..+++|||++=+
T Consensus 190 ~P~~v~~Lv~alk~~-----~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ 237 (468)
T PRK12581 190 TPKAAKELVSGIKAM-----TNLPLIVHTHATSGISQMTYLAAVEAGADRIDT 237 (468)
T ss_pred CHHHHHHHHHHHHhc-----cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEe
Confidence 444555666666653 2356766 7788888999999999997643
No 303
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.41 E-value=0.18 Score=47.01 Aligned_cols=188 Identities=12% Similarity=0.167 Sum_probs=117.8
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcc--cccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRF--VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~f--vpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
|..=+.|+..+.-.++.+++.+...| +.+-.|++ .+ +.+=..+++.+.+..+.|+-+||==......+..++++|.
T Consensus 21 ~AfN~~n~e~~~avi~AAee~~sPvI-lq~s~~~~~~~~-~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GF 98 (286)
T PRK12738 21 PAFNIHNAETIQAILEVCSEMRSPVI-LAGTPGTFKHIA-LEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGV 98 (286)
T ss_pred EEEEeCCHHHHHHHHHHHHHHCCCEE-EEcCcchhhhCC-HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 33333445555566778888888765 55555532 11 1111123444444457899999966544557888999998
Q ss_pred CEEEEccccccc----ccHHHHHHHHHHcCCcE----EEE--------ECC----CCCHHHHHHhhc--cCCEEEE--Ee
Q 023494 140 DIVSVHCEQSST----IHLHRTLNQIKDLGAKA----GVV--------LNP----ATSLSAIECVLD--VVDLVLI--MS 195 (281)
Q Consensus 140 d~Itvh~Ea~~~----~~i~~~l~~ik~~G~k~----Gla--------i~p----~t~ie~~~~~l~--~vD~Ilv--ms 195 (281)
+.|-+=.-..+. ..-+++.+.++..|+-+ |-. ... -|..+...++.+ .+|.+.+ .+
T Consensus 99 tSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt 178 (286)
T PRK12738 99 RSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGT 178 (286)
T ss_pred CeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCc
Confidence 777665433221 22457778888888654 221 111 356677778776 4897654 34
Q ss_pred ecCCCCCCccchh-HHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEcccccC
Q 023494 196 VNPGFGGQSFIES-QVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 196 V~pG~~GQ~f~~~-~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+|--+.+ .|. .+++|+++++.. ++++..=|| +..+.++++++.|..-+=+++.+..
T Consensus 179 ~HG~Y~~---~p~Ldfd~l~~I~~~~-----~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~ 237 (286)
T PRK12738 179 AHGLYSK---TPKIDFQRLAEIREVV-----DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKI 237 (286)
T ss_pred ccCCCCC---CCcCCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHH
Confidence 4422222 122 277888887765 368888775 4478999999999999999998864
No 304
>PLN02411 12-oxophytodienoate reductase
Probab=96.34 E-value=0.072 Score=51.69 Aligned_cols=129 Identities=19% Similarity=0.304 Sum_probs=77.5
Q ss_pred HHHcCCCEEEEccccc--------c------------cc----cHHHHHHHHHHc-CC-cEEEEECCCCC---------H
Q 023494 134 FIKAGADIVSVHCEQS--------S------------TI----HLHRTLNQIKDL-GA-KAGVVLNPATS---------L 178 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~------------~~----~i~~~l~~ik~~-G~-k~Glai~p~t~---------i 178 (281)
+.++|.|+|-+|+... + .+ -+.++++++|+. |- .+|+=++|... +
T Consensus 174 A~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~ 253 (391)
T PLN02411 174 AIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPL 253 (391)
T ss_pred HHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcch
Confidence 4679999999996421 0 00 155788888875 42 37887887321 1
Q ss_pred H---HHHHhhc--------cCCEEEEEeecC-CCCC---Cccch--hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHH
Q 023494 179 S---AIECVLD--------VVDLVLIMSVNP-GFGG---QSFIE--SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241 (281)
Q Consensus 179 e---~~~~~l~--------~vD~IlvmsV~p-G~~G---Q~f~~--~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~ 241 (281)
+ .+.+.+. .+|+|-+..-.. .+.. ....+ ......+++|+.. +.++.+-||++++...
T Consensus 254 ~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v-----~~pvi~~G~i~~~~a~ 328 (391)
T PLN02411 254 NLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAY-----QGTFMCSGGFTRELGM 328 (391)
T ss_pred hhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHc-----CCCEEEECCCCHHHHH
Confidence 1 1222222 278887643211 0110 01101 1112234455543 3578899999999999
Q ss_pred HHHHcC-CcEEEEcccccCCCCHHHHH
Q 023494 242 KVIEAG-ANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 242 ~~~~aG-AD~~VvGSaIf~a~dp~~~~ 267 (281)
++++.| ||.+.+|++++..+|....+
T Consensus 329 ~~l~~g~aDlV~~gR~~iadPdl~~k~ 355 (391)
T PLN02411 329 QAVQQGDADLVSYGRLFISNPDLVLRF 355 (391)
T ss_pred HHHHcCCCCEEEECHHHHhCccHHHHH
Confidence 999999 99999999999877765444
No 305
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.33 E-value=0.11 Score=48.20 Aligned_cols=161 Identities=18% Similarity=0.142 Sum_probs=95.0
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcC-CCeEEEEee-----eCc--ccccccCCHHHHHHcCcCCCCCeeEEEEe--cC
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAG-CDWIHVDVM-----DGR--FVPNITIGPLVVDALRPVTDLPLDVHLMI--VE 126 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G-~d~iHiDIm-----DG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv--~d 126 (281)
...+.+||..-+..++.+..+.++++| +|.|++-+. .|. +-.+..+-.++++++|+.+++|+.+.|-. .+
T Consensus 91 ~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~ 170 (301)
T PRK07259 91 DTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTD 170 (301)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchh
Confidence 456889999989889999999999998 999988541 111 11112334667788888778888886642 23
Q ss_pred hhhHHHHHHHcCCCEEEEcc---------ccc-----------c----cccHHHHHHHHHHc-CCcEEEEECCCCCHHHH
Q 023494 127 PEQRVPDFIKAGADIVSVHC---------EQS-----------S----TIHLHRTLNQIKDL-GAKAGVVLNPATSLSAI 181 (281)
Q Consensus 127 p~~~i~~~~~aGAd~Itvh~---------Ea~-----------~----~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~ 181 (281)
...+.+.+.++|+|.++++- +.. + .....+.+..+++. ++. -+...-=+..+.+
T Consensus 171 ~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ip-vi~~GGI~~~~da 249 (301)
T PRK07259 171 IVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIP-IIGMGGISSAEDA 249 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCC-EEEECCCCCHHHH
Confidence 34456778899999998731 100 0 00123566666664 332 3333333455666
Q ss_pred HHhh-ccCCEEEEEeecCCCCCCccchhHHHHHH-HHHHHhhhcC
Q 023494 182 ECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKIS-DLRRMCLEKG 224 (281)
Q Consensus 182 ~~~l-~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~-~lr~l~~~~~ 224 (281)
.+++ ..+|.|.+.+.. -..|..+.+++ .+.+++.++|
T Consensus 250 ~~~l~aGAd~V~igr~l------l~~P~~~~~i~~~l~~~~~~~g 288 (301)
T PRK07259 250 IEFIMAGASAVQVGTAN------FYDPYAFPKIIEGLEAYLDKYG 288 (301)
T ss_pred HHHHHcCCCceeEcHHH------hcCcHHHHHHHHHHHHHHHHcC
Confidence 6655 358988763221 11355555544 3344444443
No 306
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=96.32 E-value=0.19 Score=49.79 Aligned_cols=182 Identities=18% Similarity=0.185 Sum_probs=99.8
Q ss_pred CceEeEEEeccCcc---CHHHHHHHH-----HHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecCh
Q 023494 57 DIIVSPSILSANFA---KLGEQVKAV-----ELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEP 127 (281)
Q Consensus 57 ~~~i~pSila~D~~---~l~~~l~~l-----~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp 127 (281)
...|..-| .|.. .+.+.++.+ ...| +.+..|+.|-++.+.- .--...|+.+++.++.|+.+ .+.||
T Consensus 91 p~~Ia~eI--~D~l~~e~i~~r~~~~~~~~~~rvG-~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSI--DT~dp 165 (450)
T PRK04165 91 PTGIAVDV--SDTMDDEEIDARLKKINNFQFERVG-EILKLDMVALRNASGDPEKFAKAVKKVAETTDLPLIL--CSEDP 165 (450)
T ss_pred CCEEEEEE--eCCCChHHHHHHHHHhhcchHhhhc-ccccCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEE--eCCCH
Confidence 45666666 3433 233333444 3445 2223455554444431 11135667776656778765 56787
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc------CCEEEEEeecCCCC
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV------VDLVLIMSVNPGFG 201 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~------vD~IlvmsV~pG~~ 201 (281)
. .++...++|+|..-+-.-. ..+++.+..+.++++|..+.+ ..++ ++.++++... .|.|+ +||++
T Consensus 166 e-vleaAleagad~~plI~Sa-t~dN~~~m~~la~~yg~pvVv-~~~d--l~~L~~lv~~~~~~GI~dIIL----DPg~g 236 (450)
T PRK04165 166 A-VLKAALEVVADRKPLLYAA-TKENYEEMAELAKEYNCPLVV-KAPN--LEELKELVEKLQAAGIKDLVL----DPGTE 236 (450)
T ss_pred H-HHHHHHHhcCCCCceEEec-CcchHHHHHHHHHHcCCcEEE-Echh--HHHHHHHHHHHHHcCCCcEEE----CCCCc
Confidence 7 6677888898843222222 134677888889999987766 3332 5555554432 24443 89886
Q ss_pred CCccchhHHHHHHHHHHH---hhhcCCCCeEEEecC------CChh--cHHHHHHcCCcEEEEcc
Q 023494 202 GQSFIESQVKKISDLRRM---CLEKGVNPWIEVDGG------VGPK--NAYKVIEAGANALVAGS 255 (281)
Q Consensus 202 GQ~f~~~~l~kI~~lr~l---~~~~~~~~~I~VDGG------I~~e--~i~~~~~aGAD~~VvGS 255 (281)
| | .+++++..++|+. -..+.+++++-+.-+ +-.| ++..++..|+|++|+-+
T Consensus 237 g--f-~ksl~~~~~iRr~Al~~~~~~lgyPil~~~s~k~~~~~~~E~~~As~~~~kya~i~Vl~~ 298 (450)
T PRK04165 237 N--I-KETLDDFVQIRRAAIKKGDRPLGYPIIAFPIEAWMSDPMKEAAIASTLIAKYADILVLHD 298 (450)
T ss_pred h--h-hhhHHHHHHHHhhhhhcccccCCCCEEEcchhhcccchHHHHHHHHHHHHhCCcEEEEcC
Confidence 4 2 2333445555555 222345667644222 1122 44567889999999874
No 307
>PRK09389 (R)-citramalate synthase; Provisional
Probab=96.31 E-value=0.16 Score=50.75 Aligned_cols=184 Identities=15% Similarity=0.149 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
.-.+..+.|.+.|+|.|++ |.++-+ .-..+.++.+.+. .+..+.++.... .+.++.+.++|++.|++..-..
T Consensus 25 ~K~~ia~~L~~~Gv~~IE~----G~p~~~-~~d~e~v~~i~~~~~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~S 97 (488)
T PRK09389 25 EKLEIARKLDELGVDVIEA----GSAITS-EGEREAIKAVTDEGLNAEICSFARAV--KVDIDAALECDVDSVHLVVPTS 97 (488)
T ss_pred HHHHHHHHHHHcCCCEEEE----eCCcCC-HHHHHHHHHHHhcCCCcEEEeecccC--HHHHHHHHhCCcCEEEEEEccC
Confidence 3345566788899988887 432211 1123556666543 222333322211 3458888999999988775432
Q ss_pred cc--------------ccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchh
Q 023494 150 ST--------------IHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 150 ~~--------------~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
+. +.+.+.++.+|+.|.++-+... ..++.+.+.+++.. +|.|.+ |-..|-....+
T Consensus 98 d~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l----~DTvG~~~P~~ 173 (488)
T PRK09389 98 DLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICF----CDTVGILTPEK 173 (488)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEE----ecCCCCcCHHH
Confidence 11 2355667888999988766443 33566666555432 677654 33344333344
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEcccccC------CCCHHHHHHHHHH
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVFG------AKDYAEAIKGIKT 272 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf~------a~dp~~~~~~l~~ 272 (281)
..+.++.+++.. +++|++ |-|....|.-..+++||+.+ =+.|++ +.+.++.+..|+.
T Consensus 174 ~~~lv~~l~~~~-----~v~l~~H~HND~GlAvANalaAv~aGa~~V--d~Ti~GiGERaGNa~lE~lv~~L~~ 240 (488)
T PRK09389 174 TYELFKRLSELV-----KGPVSIHCHNDFGLAVANTLAALAAGADQV--HVTINGIGERAGNASLEEVVMALKH 240 (488)
T ss_pred HHHHHHHHHhhc-----CCeEEEEecCCccHHHHHHHHHHHcCCCEE--EEEcccccccccCccHHHHHHHHHh
Confidence 455566665532 356766 77888888889999999964 333432 3455555555543
No 308
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=96.31 E-value=0.21 Score=50.42 Aligned_cols=188 Identities=13% Similarity=0.202 Sum_probs=110.7
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC-CHHHHHHcCcC--CCCCeeEEEEecCh------hhHHHHHHHc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI-GPLVVDALRPV--TDLPLDVHLMIVEP------EQRVPDFIKA 137 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~-G~~~I~~ir~~--t~~~idaHLmv~dp------~~~i~~~~~a 137 (281)
++...-.+..+.|.+.|+|.|++ | | |..+. ..+.++.|++. .+..+.+.-+...+ .+-++.+.++
T Consensus 24 ~s~e~Kl~ia~~L~~~Gvd~IEv----G-~-p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~ 97 (524)
T PRK12344 24 FSVEDKLRIARKLDELGVDYIEG----G-W-PGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDA 97 (524)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE----c-C-CcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhC
Confidence 33334445667788999998887 3 3 32222 23445555431 23344443333222 2346778899
Q ss_pred CCCEEEEccccc--------------ccccHHHHHHHHHHcCCcEEEEEC-----CCCCHHHHHHhhc-----cCCEEEE
Q 023494 138 GADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLN-----PATSLSAIECVLD-----VVDLVLI 193 (281)
Q Consensus 138 GAd~Itvh~Ea~--------------~~~~i~~~l~~ik~~G~k~Glai~-----p~t~ie~~~~~l~-----~vD~Ilv 193 (281)
|++.|++-.-+. ..+.+.+.++.+|++|.++-+... ..++.+.+.++.. .+|.|.+
T Consensus 98 g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l 177 (524)
T PRK12344 98 GTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVL 177 (524)
T ss_pred CCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 999988864321 012355778889999998765322 2356665555543 2677654
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEcccccC------CCCH
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVFG------AKDY 263 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf~------a~dp 263 (281)
|-..|.....++.+.++.+++.+ +.+|++ |-|....|.-..+++|||.+ =+.|++ +.+.
T Consensus 178 ----~DTvG~~~P~~v~~li~~l~~~~-----~v~i~~H~HND~GlA~ANslaAi~aGa~~V--d~Tl~GlGERaGNa~l 246 (524)
T PRK12344 178 ----CDTNGGTLPHEVAEIVAEVRAAP-----GVPLGIHAHNDSGCAVANSLAAVEAGARQV--QGTINGYGERCGNANL 246 (524)
T ss_pred ----ccCCCCcCHHHHHHHHHHHHHhc-----CCeEEEEECCCCChHHHHHHHHHHhCCCEE--EEecccccccccCcCH
Confidence 34445444445566677776654 356776 78888888888999999975 333432 3445
Q ss_pred HHHHHHHH
Q 023494 264 AEAIKGIK 271 (281)
Q Consensus 264 ~~~~~~l~ 271 (281)
++.+..|+
T Consensus 247 E~lv~~L~ 254 (524)
T PRK12344 247 CSIIPNLQ 254 (524)
T ss_pred HHHHHHHH
Confidence 55554443
No 309
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.28 E-value=0.015 Score=53.18 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=54.3
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++.++.|.+. +|.+++.-++....++.-+ ++-|+++.+.. +.+++++|||+ .+.+.++..+|++.+++
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n---~~~i~~i~~~~-----~~pv~~gGGi~s~~d~~~l~~~G~~~vvi 102 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPN---YELIENLASEC-----FMPLCYGGGIKTLEQAKKIFSLGVEKVSI 102 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCccc---HHHHHHHHHhC-----CCCEEECCCCCCHHHHHHHHHCCCCEEEE
Confidence 567767776553 7888876665432233222 34444444432 36899999996 88999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
|++++...
T Consensus 103 gs~~~~~~ 110 (258)
T PRK01033 103 NTAALEDP 110 (258)
T ss_pred ChHHhcCH
Confidence 99988643
No 310
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.27 E-value=0.016 Score=52.59 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=54.2
Q ss_pred CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 175 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 175 ~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
.+|++..+.|.+. +.++-+.-.+--+.|++-+... |+++.+.. +.+++|.|||+ .+.+..++++|++.+|
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~---i~~i~~~~-----~~~vQvGGGIRs~~~v~~ll~~G~~rVi 102 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEA---IKEILEAT-----DVPVQVGGGIRSLEDVEALLDAGVARVI 102 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHH---HHHHHHhC-----CCCEEeeCCcCCHHHHHHHHHCCCCEEE
Confidence 4688888887653 6666554444334455544344 44444443 36899999999 8899999999999999
Q ss_pred EcccccC
Q 023494 253 AGSAVFG 259 (281)
Q Consensus 253 vGSaIf~ 259 (281)
+||.-++
T Consensus 103 iGt~av~ 109 (241)
T COG0106 103 IGTAAVK 109 (241)
T ss_pred Eecceec
Confidence 9988765
No 311
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=96.25 E-value=0.71 Score=41.05 Aligned_cols=189 Identities=18% Similarity=0.203 Sum_probs=112.4
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeC-cccccc--cCCH----HHHHHcCcCCCCCeeEEEEecChhhHHHHH---HH
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDG-RFVPNI--TIGP----LVVDALRPVTDLPLDVHLMIVEPEQRVPDF---IK 136 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~--~~G~----~~I~~ir~~t~~~idaHLmv~dp~~~i~~~---~~ 136 (281)
+|-.++++ ++++.+.|. .+| +.-|.+ .-|. +.+++|++..+.++.+-+.-.|++..++.. .+
T Consensus 4 lDsa~~~e-i~~~~~~~~-------i~GvTTNPsll~k~~~~~~~~~~~~i~~~~~~~v~~qv~~~~~e~~i~~a~~l~~ 75 (211)
T cd00956 4 LDTADLEE-IKKASETGL-------LDGVTTNPSLIAKSGRIDFEAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLAS 75 (211)
T ss_pred ecCCCHHH-HHHHHhcCC-------cCccccCHHHHHhcCCcCHHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHHHHH
Confidence 56667754 666655542 224 223332 2233 556666655445666666667877766543 34
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-HHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
.+- .+.+=.=. +..--+.++.+++.|+++++..-- +.+. +......++||..+ -|.-. .+-....+.+++
T Consensus 76 ~~~-~~~iKIP~--T~~gl~ai~~L~~~gi~v~~T~V~--s~~Qa~~Aa~AGA~yvsP~---vgR~~-~~g~dg~~~i~~ 146 (211)
T cd00956 76 LGG-NVVVKIPV--TEDGLKAIKKLSEEGIKTNVTAIF--SAAQALLAAKAGATYVSPF---VGRID-DLGGDGMELIRE 146 (211)
T ss_pred hCC-CEEEEEcC--cHhHHHHHHHHHHcCCceeeEEec--CHHHHHHHHHcCCCEEEEe---cChHh-hcCCCHHHHHHH
Confidence 322 23332111 223456777888889998875421 2322 22233358887543 22200 011234677888
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccC----CCCHHHHHHHHHH
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG----AKDYAEAIKGIKT 272 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~----a~dp~~~~~~l~~ 272 (281)
+.+++..++.+.+|.+.|=-|++++-++.++|+|++-++-.+++ .+-..+.++.+.+
T Consensus 147 i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~~t~~~v~~F~~ 207 (211)
T cd00956 147 IRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTDKGVEKFLE 207 (211)
T ss_pred HHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCccHHHHHHHHHH
Confidence 88888887777888888888899999999999999999977653 4445566666654
No 312
>PRK12999 pyruvate carboxylase; Reviewed
Probab=96.24 E-value=0.14 Score=56.28 Aligned_cols=200 Identities=14% Similarity=0.106 Sum_probs=119.1
Q ss_pred EEEecc--CccCHHHHHHHHHHc--CCCeEEEEeeeCccc---ccccC-CHHHHHHcCcC-CCCCeeEEEEecC------
Q 023494 62 PSILSA--NFAKLGEQVKAVELA--GCDWIHVDVMDGRFV---PNITI-GPLVVDALRPV-TDLPLDVHLMIVE------ 126 (281)
Q Consensus 62 pSila~--D~~~l~~~l~~l~~~--G~d~iHiDImDG~fv---pn~~~-G~~~I~~ir~~-t~~~idaHLmv~d------ 126 (281)
.|+++. ...++....+.+.++ |+..+++.-=. +|- +-... -.+.++.+|+. ++.++...+--.|
T Consensus 545 Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~gga-tfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~ 623 (1146)
T PRK12999 545 QSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGA-TFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTN 623 (1146)
T ss_pred hccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCc-chhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccC
Confidence 465533 333555556667777 89988875100 111 11222 23567888875 6666665444211
Q ss_pred -h----hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCC----------CCHHHHHHhhc-----
Q 023494 127 -P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA----------TSLSAIECVLD----- 186 (281)
Q Consensus 127 -p----~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~----------t~ie~~~~~l~----- 186 (281)
| ..+++.+.++|.|++.+-......+++...++.+|+.|..+-++++.. .+++.+.++..
T Consensus 624 yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~ 703 (1146)
T PRK12999 624 YPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKA 703 (1146)
T ss_pred CCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 2 246888899999998776432224567888999999997655554433 24444444432
Q ss_pred cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEc----cccc
Q 023494 187 VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAG----SAVF 258 (281)
Q Consensus 187 ~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvG----SaIf 258 (281)
.+|.|.+ .-..|......+.+.++.+|+.+ +++|.+ |-|....|.-..+++|||++=+- +...
T Consensus 704 Ga~~i~i----kDt~G~l~P~~~~~lv~~lk~~~-----~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~~t 774 (1146)
T PRK12999 704 GAHILAI----KDMAGLLKPAAAYELVSALKEEV-----DLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSGLT 774 (1146)
T ss_pred CCCEEEE----CCccCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhhcCCc
Confidence 2676654 23345544455567777777654 356776 78888889999999999977433 2233
Q ss_pred CCCCHHHHHHHHH
Q 023494 259 GAKDYAEAIKGIK 271 (281)
Q Consensus 259 ~a~dp~~~~~~l~ 271 (281)
++.+.++.+..|+
T Consensus 775 gn~~le~vv~~L~ 787 (1146)
T PRK12999 775 SQPSLNSIVAALE 787 (1146)
T ss_pred CCHHHHHHHHHHH
Confidence 3344444444444
No 313
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.24 E-value=0.045 Score=51.39 Aligned_cols=151 Identities=15% Similarity=0.197 Sum_probs=87.9
Q ss_pred CHHHHHHcCcCC-CCCeeEEEEecChhhHHHH---HHHcCCCEEEEccccc---------------ccccHHHHHHHHHH
Q 023494 103 GPLVVDALRPVT-DLPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQS---------------STIHLHRTLNQIKD 163 (281)
Q Consensus 103 G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~---~~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~ 163 (281)
.....+.+...+ ..|+.+.|..+||..+.+. +.+.|+|.|=+-.-+. ..+.+.++++.+++
T Consensus 40 ~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~ 119 (309)
T PF01207_consen 40 NKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRK 119 (309)
T ss_dssp -HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHH
T ss_pred ccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhc
Confidence 345566665553 3699999999999876543 3455889887753221 12346678888886
Q ss_pred c-CCcEEEEECCCCC--HHHHHHhhc-----cCCEEEEEeecCCCCCCccc-hhHHHHHHHHHHHhhhcCCCCeEEEecC
Q 023494 164 L-GAKAGVVLNPATS--LSAIECVLD-----VVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (281)
Q Consensus 164 ~-G~k~Glai~p~t~--ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGG 234 (281)
. ++.+.+=+..... .+...++++ .++.|.| |+-...|.+. +.-++.|+++++.+ +++|..=||
T Consensus 120 ~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~v---H~Rt~~q~~~~~a~w~~i~~i~~~~-----~ipvi~NGd 191 (309)
T PF01207_consen 120 AVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITV---HGRTRKQRYKGPADWEAIAEIKEAL-----PIPVIANGD 191 (309)
T ss_dssp H-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEE---ECS-TTCCCTS---HHHHHHCHHC------TSEEEEESS
T ss_pred ccccceEEecccccccchhHHHHHHHHhhhcccceEEE---ecCchhhcCCcccchHHHHHHhhcc-----cceeEEcCc
Confidence 4 6666665544433 232333332 2677755 5555566665 45577777777654 379999999
Q ss_pred CC-hhcHHHHHHc-CCcEEEEcccccCCC
Q 023494 235 VG-PKNAYKVIEA-GANALVAGSAVFGAK 261 (281)
Q Consensus 235 I~-~e~i~~~~~a-GAD~~VvGSaIf~a~ 261 (281)
|. .+.+..+.+. |+|.+.+|++.+..+
T Consensus 192 I~s~~d~~~~~~~tg~dgvMigRgal~nP 220 (309)
T PF01207_consen 192 IFSPEDAERMLEQTGADGVMIGRGALGNP 220 (309)
T ss_dssp --SHHHHHHHCCCH-SSEEEESHHHCC-C
T ss_pred cCCHHHHHHHHHhcCCcEEEEchhhhhcC
Confidence 99 8888888776 999999999987654
No 314
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=96.19 E-value=0.04 Score=53.11 Aligned_cols=121 Identities=19% Similarity=0.315 Sum_probs=71.0
Q ss_pred HcCCCEEEEcccc--cccccHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHh-hc-cCCEEEEEeecCCCCCCc--cch
Q 023494 136 KAGADIVSVHCEQ--SSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECV-LD-VVDLVLIMSVNPGFGGQS--FIE 207 (281)
Q Consensus 136 ~aGAd~Itvh~Ea--~~~~~i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~-l~-~vD~IlvmsV~pG~~GQ~--f~~ 207 (281)
..|.|.++-.... .+.+++.+.++.+|+.+ +.+|+=+.....++.+... .+ .+|+|.+=.-+-|.+..+ +..
T Consensus 170 ~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d 249 (368)
T PF01645_consen 170 PPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMD 249 (368)
T ss_dssp -TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHH
T ss_pred CCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHh
Confidence 4577777754332 13456778888888865 8899988777888776663 32 489998755444433322 211
Q ss_pred h----HHHHHHHHHHHhhhcCC--CCeEEEecCCC-hhcHHHHHHcCCcEEEEccc
Q 023494 208 S----QVKKISDLRRMCLEKGV--NPWIEVDGGVG-PKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 208 ~----~l~kI~~lr~l~~~~~~--~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSa 256 (281)
. +..-|.++.+.+.+++. .+.+.++||+. +.++-..+..|||.+-+|++
T Consensus 250 ~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~ 305 (368)
T PF01645_consen 250 HVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTA 305 (368)
T ss_dssp HC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHH
T ss_pred hCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecch
Confidence 1 12336666676665443 47799999998 77999999999999999976
No 315
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=96.18 E-value=0.14 Score=49.38 Aligned_cols=182 Identities=14% Similarity=0.148 Sum_probs=95.7
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccc--cccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVP--NITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp--n~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
+...+.++++.+.+.|++.+++ .-|.-.. .+.+=.+.++.||+... .+.++....+.+ .++.+.++|++.+++-
T Consensus 105 s~eEI~~~a~~~~~~Gv~~i~l--vgGe~p~~~~~e~l~~~i~~Ik~~~p-~i~i~~g~lt~e-~l~~Lk~aGv~r~~i~ 180 (371)
T PRK09240 105 DEEEIEREMAAIKKLGFEHILL--LTGEHEAKVGVDYIRRALPIAREYFS-SVSIEVQPLSEE-EYAELVELGLDGVTVY 180 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEE--eeCCCCCCCCHHHHHHHHHHHHHhCC-CceeccCCCCHH-HHHHHHHcCCCEEEEE
Confidence 4445666667777889998766 3353221 12333455666665321 122222222322 4578999999999999
Q ss_pred ccccc------------c---ccHHHHHHHHHHcCCc---EEEEECCCCCHHHHHHhhc-------c-------CCEEEE
Q 023494 146 CEQSS------------T---IHLHRTLNQIKDLGAK---AGVVLNPATSLSAIECVLD-------V-------VDLVLI 193 (281)
Q Consensus 146 ~Ea~~------------~---~~i~~~l~~ik~~G~k---~Glai~p~t~ie~~~~~l~-------~-------vD~Ilv 193 (281)
.|+.+ . ++..+.++.+++.|++ .|+.+..+...++..+++. . +-+.-+
T Consensus 181 lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l 260 (371)
T PRK09240 181 QETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFPRL 260 (371)
T ss_pred EecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeecCcc
Confidence 88631 1 1233567777888985 4556554444433333221 1 112234
Q ss_pred EeecCC-CCCCc-cch-hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHH-HHHcCC------cEEEEcccccC
Q 023494 194 MSVNPG-FGGQS-FIE-SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYK-VIEAGA------NALVAGSAVFG 259 (281)
Q Consensus 194 msV~pG-~~GQ~-f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~-~~~aGA------D~~VvGSaIf~ 259 (281)
|.+ || +..++ ..+ +.++-|.-.|-+++. ..|.+.||=.. +++. ++..|+ +...+|.++..
T Consensus 261 ~P~-~g~~~~~~~~~~~e~l~~ia~~Rl~lP~----~~i~~s~g~~~-~lrd~~~~~~~~~~~ag~~~~~G~y~~~ 330 (371)
T PRK09240 261 RPC-TGGIEPASIVSDKQLVQLICAFRLFLPD----VEISLSTRESP-EFRDNLIPLGITKMSAGSSTQPGGYADD 330 (371)
T ss_pred ccC-CCCCCCCCCCCHHHHHHHHHHHHHHCcc----cccEEecCCCH-HHHHHHHhhcceeeccCccCCCCCcCCC
Confidence 555 45 33333 222 345556666666553 46888999542 3332 222333 55555655554
No 316
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=96.16 E-value=0.019 Score=52.33 Aligned_cols=131 Identities=18% Similarity=0.270 Sum_probs=80.9
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCC-------CCHH----HHHHhhccCC--
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-------TSLS----AIECVLDVVD-- 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~-------t~ie----~~~~~l~~vD-- 189 (281)
.+++.+.|++++.+. .| +.+.+.+-++.+.++|+.+.+-+.-. ...+ .+...++.++
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f~E--td~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~ 154 (244)
T PF00121_consen 77 AEMLKDLGCKYVIIGHSERRQYFGE--TDEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKSILKGIDKE 154 (244)
T ss_dssp HHHHHHTTESEEEESCHHHHHHST---BHHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGG
T ss_pred HHHHHHhhCCEEEeccccccCcccc--ccHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 578899999999885 34 35678888889999999999988641 1112 2223333322
Q ss_pred -----EEEEEeecC-CCCCCccchhHHHH-HHHHHHHhhh-----cCCCCeEEEecCCChhcHHHH-HHcCCcEEEEccc
Q 023494 190 -----LVLIMSVNP-GFGGQSFIESQVKK-ISDLRRMCLE-----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSA 256 (281)
Q Consensus 190 -----~IlvmsV~p-G~~GQ~f~~~~l~k-I~~lr~l~~~-----~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSa 256 (281)
+|.+=++.. |. |+.-.++-.+. .+.+|+.+.+ ...+++|.-.|+|+++|+.++ ...+.|++-+|++
T Consensus 155 ~~~~~iIAYEPvWAIGt-G~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~a 233 (244)
T PF00121_consen 155 ELKNIIIAYEPVWAIGT-GKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGA 233 (244)
T ss_dssp GGTCEEEEEEEGGGTSS-SS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGG
T ss_pred cccceEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchh
Confidence 333333332 43 55544443332 3344444321 122478989999999999976 5789999999999
Q ss_pred ccCCCCHH
Q 023494 257 VFGAKDYA 264 (281)
Q Consensus 257 If~a~dp~ 264 (281)
-.+.+++.
T Consensus 234 sl~~~~F~ 241 (244)
T PF00121_consen 234 SLKAESFL 241 (244)
T ss_dssp GGSTHHHH
T ss_pred hhcccchh
Confidence 88766544
No 317
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.12 E-value=0.099 Score=50.52 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=76.4
Q ss_pred HHHcCCCEEEEcccc-c-----------c-------------cccHHHHHHHHHHc---CCcEEEEECCC----------
Q 023494 134 FIKAGADIVSVHCEQ-S-----------S-------------TIHLHRTLNQIKDL---GAKAGVVLNPA---------- 175 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea-~-----------~-------------~~~i~~~l~~ik~~---G~k~Glai~p~---------- 175 (281)
+.++|.|+|-+|... . . ..-+.++++.+|+. +..+|+=+++.
T Consensus 159 a~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~ 238 (382)
T cd02931 159 AKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGA 238 (382)
T ss_pred HHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccccc
Confidence 357899999999632 1 0 01145888888875 34678767652
Q ss_pred ----------CCHHHHHHhh---c--cCCEEEEEeecCCCCCC------c-cchhH--HHHHHHHHHHhhhcCCCCeEEE
Q 023494 176 ----------TSLSAIECVL---D--VVDLVLIMSVNPGFGGQ------S-FIESQ--VKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 176 ----------t~ie~~~~~l---~--~vD~IlvmsV~pG~~GQ------~-f~~~~--l~kI~~lr~l~~~~~~~~~I~V 231 (281)
...+...+++ + .+|+|-+ ..|...+ . +.+.. ++..+++++.. ++++.+
T Consensus 239 ~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pvi~ 310 (382)
T cd02931 239 LPGEEFQEKGRDLEEGLKAAKILEEAGYDALDV---DAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-----DVPVIM 310 (382)
T ss_pred ccccccccCCCCHHHHHHHHHHHHHhCCCEEEe---CCCCCcccccccCCccCCcchhHHHHHHHHHHC-----CCCEEE
Confidence 1223332332 2 2788865 3332111 1 11111 23345555543 468889
Q ss_pred ecCCC-hhcHHHHHHcC-CcEEEEcccccCCCCHHH
Q 023494 232 DGGVG-PKNAYKVIEAG-ANALVAGSAVFGAKDYAE 265 (281)
Q Consensus 232 DGGI~-~e~i~~~~~aG-AD~~VvGSaIf~a~dp~~ 265 (281)
-|||+ ++.+.++++.| +|.+-+|+++...+|.-.
T Consensus 311 ~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~ 346 (382)
T cd02931 311 AGRMEDPELASEAINEGIADMISLGRPLLADPDVVN 346 (382)
T ss_pred eCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHH
Confidence 99995 88999999876 999999999998776543
No 318
>PLN02561 triosephosphate isomerase
Probab=96.07 E-value=0.17 Score=46.34 Aligned_cols=128 Identities=15% Similarity=0.225 Sum_probs=79.0
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCC-------CH----HHHHHhhccCCEE
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT-------SL----SAIECVLDVVDLV 191 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t-------~i----e~~~~~l~~vD~I 191 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+.+-+-+.-.. .. +.++..+..++-.
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~f~E--td~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~ 158 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRALLGE--SNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDW 158 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCC--ChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 578899999999885 33 245577778888899999888775220 00 2344444433211
Q ss_pred --EEEeecCCC---CCCccchhHHHHHH-HHHHHhhh-----cCCCCeEEEecCCChhcHHHH-HHcCCcEEEEcccccC
Q 023494 192 --LIMSVNPGF---GGQSFIESQVKKIS-DLRRMCLE-----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFG 259 (281)
Q Consensus 192 --lvmsV~pG~---~GQ~f~~~~l~kI~-~lr~l~~~-----~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaIf~ 259 (281)
++..-+|-+ +|+.-.|+-.+.+. .+|+.+.+ ...+++|.-.|+|+++|+.++ ...++|++-+|++=.+
T Consensus 159 ~~iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~ 238 (253)
T PLN02561 159 ANVVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLK 238 (253)
T ss_pred cceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhH
Confidence 223446632 35543344333322 23332221 123578989999999998865 5778999999998765
Q ss_pred C
Q 023494 260 A 260 (281)
Q Consensus 260 a 260 (281)
.
T Consensus 239 ~ 239 (253)
T PLN02561 239 P 239 (253)
T ss_pred H
Confidence 3
No 319
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=96.03 E-value=0.087 Score=51.13 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=69.5
Q ss_pred ccHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhc-c-CCEEEEEeecCCCCCCc------cchhHHHHHHHHHHHhh
Q 023494 152 IHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-V-VDLVLIMSVNPGFGGQS------FIESQVKKISDLRRMCL 221 (281)
Q Consensus 152 ~~i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~-~-vD~IlvmsV~pG~~GQ~------f~~~~l~kI~~lr~l~~ 221 (281)
+++.+.++.+|+.. +.+++=+.+....+.+...++ . +|+|.+-....|.+..+ +-.-+..-|.++++.+.
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~ 278 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALV 278 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHH
Confidence 34678899999874 577776665534555555443 4 89998754443332111 11123344555555544
Q ss_pred hc--CCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 222 EK--GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 222 ~~--~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+. +.+++|.++|||. ...+.+++..|||.+-+|+.+.
T Consensus 279 ~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l 318 (392)
T cd02808 279 KNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAAL 318 (392)
T ss_pred HcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHH
Confidence 32 2357899999997 7789999999999999998865
No 320
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=96.03 E-value=0.21 Score=49.29 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=45.7
Q ss_pred CCEEEEEeecCCC-CCCccchhHHHHHHHHHHHhhh-cCC--CCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 188 VDLVLIMSVNPGF-GGQSFIESQVKKISDLRRMCLE-KGV--NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 188 vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~lr~l~~~-~~~--~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+|.|.+- .+.|- .|+.-....+..|.++++.+.+ .++ .++|.+.|||. ++.+..+...|||.+.+||...
T Consensus 183 aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fl 257 (444)
T TIGR02814 183 ADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQ 257 (444)
T ss_pred CcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHH
Confidence 5777653 45432 2332223335556555555421 122 46799999996 8899999999999999998854
No 321
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.03 E-value=0.2 Score=44.10 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=78.0
Q ss_pred EecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC
Q 023494 123 MIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF 200 (281)
Q Consensus 123 mv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~ 200 (281)
...||.++.+.+.++||+++++..+......-.+.++.+++. ++.+.+ -..-.+.+.++.+.+ .+|.|+++....
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~-~~~i~~~~~v~~~~~~Gad~v~l~~~~~-- 105 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLR-KDFIIDPYQIYEARAAGADAVLLIVAAL-- 105 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEE-CCeecCHHHHHHHHHcCCCEEEEeeccC--
Confidence 345777888889999999999986642222233566666664 333332 111133345565554 489998864421
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccc--cCCCCHHHHHHHHHHhc
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV--FGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaI--f~a~dp~~~~~~l~~~~ 274 (281)
.+ +.++++.+.....+....+.+. +.+.+..+.+.|+|.+.+++.= ....++ +.++++++.+
T Consensus 106 -----~~---~~~~~~~~~~~~~g~~~~v~v~---~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~-~~~~~l~~~~ 169 (217)
T cd00331 106 -----DD---EQLKELYELARELGMEVLVEVH---DEEELERALALGAKIIGINNRDLKTFEVDL-NTTERLAPLI 169 (217)
T ss_pred -----CH---HHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHHcCCCEEEEeCCCccccCcCH-HHHHHHHHhC
Confidence 11 2233333333333433333443 7778899999999999887321 112344 5566666554
No 322
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.02 E-value=0.092 Score=50.32 Aligned_cols=126 Identities=20% Similarity=0.289 Sum_probs=80.3
Q ss_pred CCCeeEEEEe--cChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc----------CCcEEEEECCCC-CHHHH
Q 023494 115 DLPLDVHLMI--VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL----------GAKAGVVLNPAT-SLSAI 181 (281)
Q Consensus 115 ~~~idaHLmv--~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~----------G~k~Glai~p~t-~ie~~ 181 (281)
++|+...=|- .++ +....+.+.|.=.| +|.+. +.++..+.++.+|++ ...++.++.+.. ..+++
T Consensus 37 ~iPivsa~MDtVte~-~mAiama~~Gglgv-ih~~~-~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~ 113 (352)
T PF00478_consen 37 KIPIVSAPMDTVTES-EMAIAMARLGGLGV-IHRNM-SIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERA 113 (352)
T ss_dssp SSSEEE-SSTTTSSH-HHHHHHHHTTSEEE-EESSS-CHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHH
T ss_pred cCceEecCccccchH-HHHHHHHHhcCCce-ecCCC-CHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHH
Confidence 3566554443 222 34445667765444 67665 244445556665542 567888998875 56888
Q ss_pred HHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 182 ECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 182 ~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
..+++ .+|+|.+=+-| | .....++.|+++|+..+ +.+| +.|+|- .+.+..+.++|||.+-||
T Consensus 114 ~~L~~agvD~ivID~a~-g-----~s~~~~~~ik~ik~~~~----~~~v-iaGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 114 EALVEAGVDVIVIDSAH-G-----HSEHVIDMIKKIKKKFP----DVPV-IAGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHTT-SEEEEE-SS-T-----TSHHHHHHHHHHHHHST----TSEE-EEEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHcCCCEEEccccC-c-----cHHHHHHHHHHHHHhCC----CceE-EecccCCHHHHHHHHHcCCCEEEEe
Confidence 88775 59999764333 2 34566778888888765 3566 566655 889999999999999999
No 323
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=96.00 E-value=0.14 Score=49.20 Aligned_cols=122 Identities=19% Similarity=0.263 Sum_probs=75.0
Q ss_pred HHHcCCCEEEEccccc-------c-------------cc----cHHHHHHHHHHc-CC-cEEEEECCC---------CCH
Q 023494 134 FIKAGADIVSVHCEQS-------S-------------TI----HLHRTLNQIKDL-GA-KAGVVLNPA---------TSL 178 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~-------~-------------~~----~i~~~l~~ik~~-G~-k~Glai~p~---------t~i 178 (281)
+.++|.|+|-+|+-.. + .+ -+.++++.+|+. |- .+|+=+++. ...
T Consensus 168 A~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~ 247 (362)
T PRK10605 168 AREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNE 247 (362)
T ss_pred HHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCH
Confidence 4678999999995431 0 00 145788888874 32 377767653 122
Q ss_pred HH-HHH---hhc--cCCEEEEEeecCCCC-CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcE
Q 023494 179 SA-IEC---VLD--VVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANA 250 (281)
Q Consensus 179 e~-~~~---~l~--~vD~IlvmsV~pG~~-GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~ 250 (281)
++ ..+ .++ .+|+|-+-. +++. +..+.. .--+++|+.. +.+|.+-|+++++.+.++++.| +|.
T Consensus 248 ~e~~~~~~~~L~~~giD~i~vs~--~~~~~~~~~~~---~~~~~ik~~~-----~~pv~~~G~~~~~~ae~~i~~G~~D~ 317 (362)
T PRK10605 248 EADALYLIEQLGKRGIAYLHMSE--PDWAGGEPYSD---AFREKVRARF-----HGVIIGAGAYTAEKAETLIGKGLIDA 317 (362)
T ss_pred HHHHHHHHHHHHHcCCCEEEecc--ccccCCccccH---HHHHHHHHHC-----CCCEEEeCCCCHHHHHHHHHcCCCCE
Confidence 22 222 233 278887642 2222 222221 1123344433 3578888999999999999988 999
Q ss_pred EEEcccccCCCCHHH
Q 023494 251 LVAGSAVFGAKDYAE 265 (281)
Q Consensus 251 ~VvGSaIf~a~dp~~ 265 (281)
+-+|+++...+|...
T Consensus 318 V~~gR~~iadPd~~~ 332 (362)
T PRK10605 318 VAFGRDYIANPDLVA 332 (362)
T ss_pred EEECHHhhhCccHHH
Confidence 999999997666543
No 324
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.98 E-value=0.13 Score=49.38 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=76.3
Q ss_pred HHHcCCCEEEEccccc--------------------cc----ccHHHHHHHHHHc-C--CcEEEEECCC----------C
Q 023494 134 FIKAGADIVSVHCEQS--------------------ST----IHLHRTLNQIKDL-G--AKAGVVLNPA----------T 176 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------------------~~----~~i~~~l~~ik~~-G--~k~Glai~p~----------t 176 (281)
+.++|.|+|-+|.-.. +. .-+.++++.+|+. | ..+|+=+++. .
T Consensus 153 a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~ 232 (361)
T cd04747 153 ARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLAD 232 (361)
T ss_pred HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCC
Confidence 4678999999996541 00 0155889999985 5 5688878752 1
Q ss_pred CHHHHHHh---hc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC----------------
Q 023494 177 SLSAIECV---LD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV---------------- 235 (281)
Q Consensus 177 ~ie~~~~~---l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI---------------- 235 (281)
..++...+ +. .+|+|-+-+. ++..+.+.....+-.+++++.. +.++.+-|||
T Consensus 233 ~~~e~~~~~~~l~~~gvd~i~vs~g--~~~~~~~~~~~~~~~~~~k~~~-----~~pv~~~G~i~~~~~~~~~~~~~~~~ 305 (361)
T cd04747 233 TPDELEALLAPLVDAGVDIFHCSTR--RFWEPEFEGSELNLAGWTKKLT-----GLPTITVGSVGLDGDFIGAFAGDEGA 305 (361)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCC--CccCCCcCccchhHHHHHHHHc-----CCCEEEECCccccccccccccccccc
Confidence 22222222 33 2799765321 1112222221222334444433 3688899998
Q ss_pred ---ChhcHHHHHHcC-CcEEEEcccccCCCCHH
Q 023494 236 ---GPKNAYKVIEAG-ANALVAGSAVFGAKDYA 264 (281)
Q Consensus 236 ---~~e~i~~~~~aG-AD~~VvGSaIf~a~dp~ 264 (281)
+++.+.++++.| +|.+-+|+++...++..
T Consensus 306 ~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~ 338 (361)
T cd04747 306 SPASLDRLLERLERGEFDLVAVGRALLSDPAWV 338 (361)
T ss_pred ccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHH
Confidence 678899999876 99999999998766643
No 325
>PRK00915 2-isopropylmalate synthase; Validated
Probab=95.98 E-value=0.24 Score=49.76 Aligned_cols=185 Identities=19% Similarity=0.167 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCccccccc-CCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHH----HcCCCEEEE
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNIT-IGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFI----KAGADIVSV 144 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~-~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~----~aGAd~Itv 144 (281)
.-.+..+.|.+.|+|+|++ | | |..+ --.+.++.|.+. .+..+-++... ++. -++... ++|++.|++
T Consensus 27 ~K~~ia~~L~~~Gv~~IE~----G-~-p~~s~~d~~~v~~i~~~~~~~~i~a~~r~-~~~-did~a~~a~~~~~~~~v~i 98 (513)
T PRK00915 27 EKLQIAKQLERLGVDVIEA----G-F-PASSPGDFEAVKRIARTVKNSTVCGLARA-VKK-DIDAAAEALKPAEAPRIHT 98 (513)
T ss_pred HHHHHHHHHHHcCCCEEEE----c-C-CCCChHHHHHHHHHHhhCCCCEEEEEccC-CHH-HHHHHHHHhhcCCCCEEEE
Confidence 3345567788899998887 4 3 2211 123456666432 33444443322 222 344444 778888887
Q ss_pred cccccccc---------------cHHHHHHHHHHcCCcEEEEECC--CCCHHHHHHhhcc-----CCEEEEEeecCCCCC
Q 023494 145 HCEQSSTI---------------HLHRTLNQIKDLGAKAGVVLNP--ATSLSAIECVLDV-----VDLVLIMSVNPGFGG 202 (281)
Q Consensus 145 h~Ea~~~~---------------~i~~~l~~ik~~G~k~Glai~p--~t~ie~~~~~l~~-----vD~IlvmsV~pG~~G 202 (281)
..-.. .. .+.+.++.+|++|.++-+.... .++.+.+.+++.. +|.|.+ |-..|
T Consensus 99 ~~~~S-d~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l----~DTvG 173 (513)
T PRK00915 99 FIATS-PIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINI----PDTVG 173 (513)
T ss_pred EECCc-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEE----ccCCC
Confidence 75431 22 1457888999999998766532 3566666665443 566654 33344
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEcccccC------CCCHHHHHHHHH
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVFG------AKDYAEAIKGIK 271 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf~------a~dp~~~~~~l~ 271 (281)
.....++.+.++.+++.++. ..+.+|++ |-|.-..|.-..+++||+.+ =+.+++ +.+.++.+..|+
T Consensus 174 ~~~P~~~~~~i~~l~~~~~~-~~~v~l~~H~HND~GlAvANslaAv~aGa~~V--d~Tv~GlGERaGNa~lE~vv~~L~ 249 (513)
T PRK00915 174 YTTPEEFGELIKTLRERVPN-IDKAIISVHCHNDLGLAVANSLAAVEAGARQV--ECTINGIGERAGNAALEEVVMALK 249 (513)
T ss_pred CCCHHHHHHHHHHHHHhCCC-cccceEEEEecCCCCHHHHHHHHHHHhCCCEE--EEEeecccccccCccHHHHHHHHH
Confidence 44445556677777766532 11256776 88999889989999999965 334432 345555555553
No 326
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=95.98 E-value=0.57 Score=43.76 Aligned_cols=186 Identities=16% Similarity=0.211 Sum_probs=114.9
Q ss_pred EEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHH----HHHcCcCC--CCCeeEEEEecChhhHHHHHHH
Q 023494 63 SILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV----VDALRPVT--DLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 63 Sila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~----I~~ir~~t--~~~idaHLmv~dp~~~i~~~~~ 136 (281)
..=+.|+..+.-.++.+++.+...| +-+-.++. . ...|++. ++...+.. +.|+-+||==....+++..+.+
T Consensus 22 AfN~~n~e~~~avi~AAee~~sPvI-lq~~~~~~-~-~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~ 98 (288)
T TIGR00167 22 AFNINNLETINAVLEAAAEEKSPVI-IQFSNGAA-K-YIAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVK 98 (288)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCEE-EECCcchh-h-ccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHH
Confidence 3333445555566788888888765 54444421 0 1023443 22233334 6799999855544567888999
Q ss_pred cCCCEEEEccccccc----ccHHHHHHHHHHcCCcE----EEEE------------CCCCCHHHHHHhhcc--CCEEEE-
Q 023494 137 AGADIVSVHCEQSST----IHLHRTLNQIKDLGAKA----GVVL------------NPATSLSAIECVLDV--VDLVLI- 193 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~----~~i~~~l~~ik~~G~k~----Glai------------~p~t~ie~~~~~l~~--vD~Ilv- 193 (281)
+|.+.|-+=.-..+. ..-.++.+.++..|+-+ |-.- ..-|..+..+++... +|.+.+
T Consensus 99 ~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 178 (288)
T TIGR00167 99 AGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAA 178 (288)
T ss_pred cCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeec
Confidence 997777665433221 12346677788888755 2210 113566788888764 888654
Q ss_pred -EeecCCCCCCccchh--HHHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 194 -MSVNPGFGGQSFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 194 -msV~pG~~GQ~f~~~--~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.++|-.+.+ .|. -+++|+++++.+ ++++..=||-+ .+.++++++.|+.-+=+++.+..
T Consensus 179 iGt~HG~y~~---~p~~Ld~~~L~~I~~~v-----~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 241 (288)
T TIGR00167 179 IGNVHGVYKG---EPKGLDFERLEEIQKYV-----NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQI 241 (288)
T ss_pred cCccccccCC---CCCccCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHH
Confidence 344422222 233 467777777765 36888877655 67999999999999999998853
No 327
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.97 E-value=0.38 Score=44.82 Aligned_cols=180 Identities=15% Similarity=0.203 Sum_probs=112.0
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
.|+..+.-.++.+++.+...| +-+-.+.+ --.|.+ +++.+.+..+.|+-+||==..-...+..++++|.+.|
T Consensus 26 ~n~e~~~avi~AAe~~~sPvI-l~~~~~~~---~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSV 101 (283)
T PRK07998 26 TNLETTISILNAIERSGLPNF-IQIAPTNA---QLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSV 101 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EECcHhHH---hhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEE
Confidence 344444556677777777764 33322211 012333 3333334457899999865443457888999999888
Q ss_pred EEccccccc----ccHHHHHHHHHHcCCcE----EEEE----------CCCCCHHHHHHhhc--cCCEEEE--EeecCCC
Q 023494 143 SVHCEQSST----IHLHRTLNQIKDLGAKA----GVVL----------NPATSLSAIECVLD--VVDLVLI--MSVNPGF 200 (281)
Q Consensus 143 tvh~Ea~~~----~~i~~~l~~ik~~G~k~----Glai----------~p~t~ie~~~~~l~--~vD~Ilv--msV~pG~ 200 (281)
-+=.-..+. ..-.++.+.++.+|+-+ |-.- ..-|..+...++.. .+|.+.+ .++| |.
T Consensus 102 M~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~H-G~ 180 (283)
T PRK07998 102 MIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVH-GL 180 (283)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccc-cC
Confidence 874322221 23457788888889754 3221 11367777788776 4887643 3444 32
Q ss_pred CCCccchhH-HHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 201 GGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 201 ~GQ~f~~~~-l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.- . |.. +++++++++.. ++++..=||-+ .+.++++++.|+.-+-+|+.+..
T Consensus 181 Y~--~-p~l~~~~l~~I~~~~-----~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~ 234 (283)
T PRK07998 181 ED--I-PRIDIPLLKRIAEVS-----PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRK 234 (283)
T ss_pred CC--C-CCcCHHHHHHHHhhC-----CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHH
Confidence 21 1 333 67777777654 47888888655 68999999999999999999864
No 328
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=95.94 E-value=0.65 Score=43.35 Aligned_cols=188 Identities=16% Similarity=0.198 Sum_probs=115.4
Q ss_pred EEeccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCC--CCeeEEEEecChhhHHHHHHHcC
Q 023494 63 SILSANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTD--LPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 63 Sila~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~--~~idaHLmv~dp~~~i~~~~~aG 138 (281)
..=+.|+..+.-.++.+++.+...| +-+-.++ |.+.+..=..+++.+.+..+ .|+-+||==....+.+..++++|
T Consensus 22 AfN~~n~e~~~avi~AAee~~sPvI-l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~G 100 (286)
T PRK08610 22 QYNLNNLEFTQAILEASQEENAPVI-LGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAG 100 (286)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCEE-EEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcC
Confidence 3333455555566788888888765 5544442 22211111123444333333 79999985544455788899999
Q ss_pred CCEEEEcccccc----cccHHHHHHHHHHcCCcE----EEEE--------C--CCCCHHHHHHhhc--cCCEEEE--Eee
Q 023494 139 ADIVSVHCEQSS----TIHLHRTLNQIKDLGAKA----GVVL--------N--PATSLSAIECVLD--VVDLVLI--MSV 196 (281)
Q Consensus 139 Ad~Itvh~Ea~~----~~~i~~~l~~ik~~G~k~----Glai--------~--p~t~ie~~~~~l~--~vD~Ilv--msV 196 (281)
.+.|-+=.-..+ ...-.++++.++..|+-+ |-.= . .-|..+..+++.+ .+|.+.+ .++
T Consensus 101 ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~ 180 (286)
T PRK08610 101 FTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSV 180 (286)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecccc
Confidence 887766543322 123456777888888654 3220 1 1377788888876 4897654 344
Q ss_pred cCCCCCCccchhH-HHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 197 NPGFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 197 ~pG~~GQ~f~~~~-l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
|--+.|. |.. +++|+++++.+ ++++..=||-+ .+.++++++.|+.-+=+++.+..
T Consensus 181 HG~Y~~~---p~Ld~~~L~~I~~~~-----~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~ 238 (286)
T PRK08610 181 HGPYKGE---PKLGFKEMEEIGLST-----GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQI 238 (286)
T ss_pred ccccCCC---CCCCHHHHHHHHHHH-----CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHH
Confidence 4222232 232 67777777654 37888877655 68999999999999999999853
No 329
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=95.90 E-value=0.13 Score=45.69 Aligned_cols=125 Identities=17% Similarity=0.215 Sum_probs=75.9
Q ss_pred HHHHHHcCCCEEEEc-cccc-ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC---CCCcc
Q 023494 131 VPDFIKAGADIVSVH-CEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF---GGQSF 205 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~---~GQ~f 205 (281)
.+++.++|++++.+. .|-- ...++.+-++.+.++|+.+.+-+ ....+.+....-.-++| .-+|-+ +|..-
T Consensus 74 ~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi--~~v~~q~~~~~~~~~vI---AYEPvWAIGtG~~a 148 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCT--NNVLTTAAAAALEPDVV---AVEPPELIGTGIPV 148 (205)
T ss_pred HHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEE--HHHHHHHHhhhhcCeEE---EECCHHHhCCCCCC
Confidence 567889999988875 3310 11237788888999999988877 11222221111112233 346632 35443
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHH-HHcCCcEEEEcccccCC
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFGA 260 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaIf~a 260 (281)
.++-.+.+....+...+...+.+|.-.|||+++|+.++ .+.++|.+-+|++..++
T Consensus 149 s~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~a 204 (205)
T TIGR00419 149 SPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLKA 204 (205)
T ss_pred CHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeecC
Confidence 44444443333333222233578889999999999976 67789999999997754
No 330
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=95.88 E-value=0.38 Score=44.76 Aligned_cols=182 Identities=12% Similarity=0.151 Sum_probs=113.4
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
|+..+.-.++.+++.+...| +.+-.++ |.+.-.+ ..+++.+.+..+.|+-+||==....+.+..++++|.+.|-+=
T Consensus 25 n~e~~~avi~AAee~~sPvI-lq~s~~~~~~~~~~~~-~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~D 102 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVI-LAGTPGTFKHAGTEYI-VALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRSAMID 102 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEE-EEeCccHHhhCCHHHH-HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEeec
Confidence 44444556677778777765 5554443 2221111 123444444456899999865444457888999998877665
Q ss_pred ccccc----cccHHHHHHHHHHcCCcE----EEE--------E----CCCCCHHHHHHhhc--cCCEEEE--EeecCCCC
Q 023494 146 CEQSS----TIHLHRTLNQIKDLGAKA----GVV--------L----NPATSLSAIECVLD--VVDLVLI--MSVNPGFG 201 (281)
Q Consensus 146 ~Ea~~----~~~i~~~l~~ik~~G~k~----Gla--------i----~p~t~ie~~~~~l~--~vD~Ilv--msV~pG~~ 201 (281)
.-..+ ...-.++.+.++..|+-+ |-. . ..-|..+..+++.+ .+|.+.+ .++|--+.
T Consensus 103 gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk 182 (282)
T TIGR01858 103 GSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYK 182 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcC
Confidence 43322 123457778888888655 221 0 11356677777776 4898654 34442222
Q ss_pred CCccchh-HHHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 202 GQSFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 202 GQ~f~~~-~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+ .|. .+++|+++++.+ ++++..=||-+ .|.++++++.|+.-+=+++.+..
T Consensus 183 ~---~p~Ldf~~L~~I~~~~-----~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 235 (282)
T TIGR01858 183 K---TPKLDFDRLAEIREVV-----DVPLVLHGASDVPDEDVRRTIELGICKVNVATELKI 235 (282)
T ss_pred C---CCccCHHHHHHHHHHh-----CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHH
Confidence 3 232 267777777765 36888877654 78999999999999999998863
No 331
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=95.85 E-value=0.3 Score=47.05 Aligned_cols=198 Identities=21% Similarity=0.293 Sum_probs=105.4
Q ss_pred eEEEeccC-ccCHHHHHHHHHHcCCCeEEEEeee-Ccc----ccc--ccCCHHHHHHcCcCCCCCeeEEEEe-cChhhHH
Q 023494 61 SPSILSAN-FAKLGEQVKAVELAGCDWIHVDVMD-GRF----VPN--ITIGPLVVDALRPVTDLPLDVHLMI-VEPEQRV 131 (281)
Q Consensus 61 ~pSila~D-~~~l~~~l~~l~~~G~d~iHiDImD-G~f----vpn--~~~G~~~I~~ir~~t~~~idaHLmv-~dp~~~i 131 (281)
.|.++.-+ ..-+.+..+.+.+.|.... +=+.- |.+ .|+ ....|+.+.. + .......+-|+ .+..+.+
T Consensus 73 ~~~l~~d~~i~~~~~vt~avH~~G~~i~-iQL~H~Gr~~~~~~~~~~~~vapS~~~~-~--~~~~~~pr~mt~~eI~~ii 148 (363)
T COG1902 73 QPGLWSDAQIPGLKRLTEAVHAHGAKIF-IQLWHAGRKARASHPWLPSAVAPSAIPA-P--GGRRATPRELTEEEIEEVI 148 (363)
T ss_pred CCccCChhHhHHHHHHHHHHHhcCCeEE-EEeccCcccccccccCCCcccCCCcccc-c--cCCCCCCccCCHHHHHHHH
Confidence 45555544 4566677777888777532 33333 322 111 1222321111 0 00122334454 2333333
Q ss_pred H-------HHHHcCCCEEEEccccc--------------------ccc----cHHHHHHHHHHc-CC--cEEEEECCCCC
Q 023494 132 P-------DFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-GA--KAGVVLNPATS 177 (281)
Q Consensus 132 ~-------~~~~aGAd~Itvh~Ea~--------------------~~~----~i~~~l~~ik~~-G~--k~Glai~p~t~ 177 (281)
+ .+.+||.|+|-+|+... +.+ -+.++++++|+. |. -+|+=++|...
T Consensus 149 ~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~ 228 (363)
T COG1902 149 EDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDF 228 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 3 34678999999996431 001 155777777764 54 37887887544
Q ss_pred -------HHHHHHh---hcc---CCEEEEEeecCCCCCCc-cc-h-hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcH
Q 023494 178 -------LSAIECV---LDV---VDLVLIMSVNPGFGGQS-FI-E-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNA 240 (281)
Q Consensus 178 -------ie~~~~~---l~~---vD~IlvmsV~pG~~GQ~-f~-~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i 240 (281)
+++..++ +.. +|||-+..-..-..++. .. + .-....+.++... ..++.+.|||+ ++.+
T Consensus 229 ~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~-----~~pvi~~G~i~~~~~A 303 (363)
T COG1902 229 FDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV-----RIPVIAVGGINDPEQA 303 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc-----CCCEEEeCCCCCHHHH
Confidence 2233333 222 58887643211101111 11 1 1122223333321 25777888887 9999
Q ss_pred HHHHHcC-CcEEEEcccccCCCCHHHHH
Q 023494 241 YKVIEAG-ANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 241 ~~~~~aG-AD~~VvGSaIf~a~dp~~~~ 267 (281)
.++++.| ||.+.+|+.+...+|....+
T Consensus 304 e~~l~~g~aDlVa~gR~~ladP~~~~k~ 331 (363)
T COG1902 304 EEILASGRADLVAMGRPFLADPDLVLKA 331 (363)
T ss_pred HHHHHcCCCCEEEechhhhcCccHHHHH
Confidence 9999998 99999999999877765444
No 332
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=95.82 E-value=0.093 Score=50.05 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=75.2
Q ss_pred HHHcCCCEEEEcccc--------cc----------------cccHHHHHHHHHHc-CC--cEEEEECCC------CCHHH
Q 023494 134 FIKAGADIVSVHCEQ--------SS----------------TIHLHRTLNQIKDL-GA--KAGVVLNPA------TSLSA 180 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea--------~~----------------~~~i~~~l~~ik~~-G~--k~Glai~p~------t~ie~ 180 (281)
+.++|.|+|-+|... .+ ..-+.++++.+|+. |. .+++=+++. .+.+.
T Consensus 146 a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e 225 (353)
T cd02930 146 AREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEE 225 (353)
T ss_pred HHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHH
Confidence 467899999999731 01 11245788888874 54 455545432 24433
Q ss_pred HHHh---hc--cCCEEEEEee-c--CCCCCC-ccchh-HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-C
Q 023494 181 IECV---LD--VVDLVLIMSV-N--PGFGGQ-SFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-A 248 (281)
Q Consensus 181 ~~~~---l~--~vD~IlvmsV-~--pG~~GQ-~f~~~-~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-A 248 (281)
..++ ++ .+|+|-+... + |-...+ .+.+. -++..+++++.. +++|.+.|+++ ++.+.++++.| +
T Consensus 226 ~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v-----~iPVi~~G~i~~~~~a~~~i~~g~~ 300 (353)
T cd02930 226 VVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV-----DIPVIASNRINTPEVAERLLADGDA 300 (353)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC-----CCCEEEcCCCCCHHHHHHHHHCCCC
Confidence 3332 33 2799876211 1 110011 11111 133344555543 47899999995 88999999977 9
Q ss_pred cEEEEcccccCCCCHH
Q 023494 249 NALVAGSAVFGAKDYA 264 (281)
Q Consensus 249 D~~VvGSaIf~a~dp~ 264 (281)
|++-+|++++..++.-
T Consensus 301 D~V~~gR~~l~dP~~~ 316 (353)
T cd02930 301 DMVSMARPFLADPDFV 316 (353)
T ss_pred ChhHhhHHHHHCccHH
Confidence 9999999999777653
No 333
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.78 E-value=0.66 Score=43.10 Aligned_cols=185 Identities=15% Similarity=0.201 Sum_probs=113.1
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEE
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~It 143 (281)
+.|+..+.-.++.+++.+...| +.+-.++ |.+ +.+-...++.+.+....|+-+||==......+..++++|.+.|-
T Consensus 20 ~~n~e~~~avi~AAe~~~sPvI-i~~~~~~~~~~~-~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftSVM 97 (276)
T cd00947 20 INNLETLKAILEAAEETRSPVI-LQISEGAIKYAG-LELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSSVM 97 (276)
T ss_pred eCCHHHHHHHHHHHHHhCCCEE-EEcCcchhhhCC-HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEE
Confidence 3344455566777888877765 4444432 222 11112234444444568999998554334567888999988777
Q ss_pred Eccccccc----ccHHHHHHHHHHcCCcE----EEEEC----------CCCCHHHHHHhhc--cCCEEEE--EeecCCCC
Q 023494 144 VHCEQSST----IHLHRTLNQIKDLGAKA----GVVLN----------PATSLSAIECVLD--VVDLVLI--MSVNPGFG 201 (281)
Q Consensus 144 vh~Ea~~~----~~i~~~l~~ik~~G~k~----Glai~----------p~t~ie~~~~~l~--~vD~Ilv--msV~pG~~ 201 (281)
+=.-..+. ..-.++++.+++.|+-+ |-.-. --|..+..+++.+ .+|.+.+ .++|-.+.
T Consensus 98 iD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~ 177 (276)
T cd00947 98 IDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYK 177 (276)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccC
Confidence 65433221 12456777888888755 22211 1256777888876 4888654 34442222
Q ss_pred C-CccchhHHHHHHHHHHHhhhcCCCCeEEEecCC--ChhcHHHHHHcCCcEEEEcccccC
Q 023494 202 G-QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV--GPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 202 G-Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI--~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+ ++ .--+++|+++++.+ ++++..=||= ..+.++++++.|+.-+=+++.+..
T Consensus 178 ~~~p--~L~~~~L~~i~~~~-----~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 231 (276)
T cd00947 178 GGEP--KLDFDRLKEIAERV-----NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRL 231 (276)
T ss_pred CCCC--ccCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Confidence 2 22 12266777777765 3678777754 477999999999999999998864
No 334
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=95.77 E-value=0.11 Score=49.53 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=59.0
Q ss_pred HHHHHHHHHHc---CCcEEEEECCC-CCHHHHHHhhc----cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcC-
Q 023494 154 LHRTLNQIKDL---GAKAGVVLNPA-TSLSAIECVLD----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG- 224 (281)
Q Consensus 154 i~~~l~~ik~~---G~k~Glai~p~-t~ie~~~~~l~----~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~- 224 (281)
..+.++.+++. ..++-+.+..- +.++......+ .+|.|.+=+..|.+ | -.++. ++++++.+++.+
T Consensus 186 ~~~A~~~~~~~~p~~~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~~~-g--~l~~~---v~~vr~~ld~~g~ 259 (343)
T PRK08662 186 QVEAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSSRR-G--NFRKI---VREVRWTLDIRGY 259 (343)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCCCC-c--cHHHH---HHHHHHHHHhcCC
Confidence 45567777764 33455544332 34443333332 37777651111100 1 11222 334444443443
Q ss_pred CCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 225 VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 225 ~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+..|++.||||++|+.++.+. +|++-+|+.++++
T Consensus 260 ~~v~IeaSGgI~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 260 EHVKIFVSGGLDPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred CCeEEEEeCCCCHHHHHHHHHh-CCEEEcCccccCC
Confidence 3478999999999999999999 9999999999864
No 335
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=95.75 E-value=0.086 Score=46.71 Aligned_cols=179 Identities=15% Similarity=0.154 Sum_probs=107.0
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCC----HHHHHHcCcCCCCCeeEEEEecChhh-HHHH---HHHcCCCEEEE
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIG----PLVVDALRPVTDLPLDVHLMIVEPEQ-RVPD---FIKAGADIVSV 144 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G----~~~I~~ir~~t~~~idaHLmv~dp~~-~i~~---~~~aGAd~Itv 144 (281)
.+.++.+...|+|++=+|..||.=....... ..++..++........+-.-|+.+.. ++.. +.+.|+++|.+
T Consensus 11 ~~~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~gI~l 90 (221)
T PF03328_consen 11 PKMLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGADGIVL 90 (221)
T ss_dssp HHHHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCCeeec
Confidence 4567778889999999999998300011111 12333333222222334345665543 5566 89999999999
Q ss_pred cccccccccHHHHHHHHHHc---------CCcEEEEECCCCCHHHHHHhhc--cCCEEEEEe----ecCCCCCCccchhH
Q 023494 145 HCEQSSTIHLHRTLNQIKDL---------GAKAGVVLNPATSLSAIECVLD--VVDLVLIMS----VNPGFGGQSFIESQ 209 (281)
Q Consensus 145 h~Ea~~~~~i~~~l~~ik~~---------G~k~Glai~p~t~ie~~~~~l~--~vD~Ilvms----V~pG~~GQ~f~~~~ 209 (281)
+--. +.+++..+.+.++.. ..++.+.|.....++.+.+++. .+|.+.+.. ..-|..++.-.++.
T Consensus 91 P~ve-s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~Dls~~lG~~~~~~~~~~ 169 (221)
T PF03328_consen 91 PKVE-SAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPADLSASLGIPGQPDHPEV 169 (221)
T ss_dssp TT---SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTTTTTSTTSHHH
T ss_pred cccC-cHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHHHHhhhccCCCCcchHH
Confidence 8543 356677777777654 2456666755455677777763 367776643 33466666656666
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEec-CCChhcHHHHHHcCCcEEEEcc
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDG-GVGPKNAYKVIEAGANALVAGS 255 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDG-GI~~e~i~~~~~aGAD~~VvGS 255 (281)
..-.+++.......| . -.+|+ -.+.++...+.+.|......|.
T Consensus 170 ~~a~~~v~~aa~a~g--~-~~i~~~~~~~~d~~~~~~~~~~~~~~G~ 213 (221)
T PF03328_consen 170 LEARSKVVLAARAAG--K-PAIDGVFPDFEDAEGLEAEGFRARALGF 213 (221)
T ss_dssp HHHHHHHHHHHHHTT--E-EEEEEEESSSSHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHHHcC--C-CeEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence 666666655555543 2 13555 4567788888888888777774
No 336
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.75 E-value=0.24 Score=45.89 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=89.9
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccc-----------cCCHHHHHHcCcCCCCCeeEEEEe
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNI-----------TIGPLVVDALRPVTDLPLDVHLMI 124 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-----------~~G~~~I~~ir~~t~~~idaHLmv 124 (281)
.-+..||...|...+.+..+.+++.+ +|.|.+-+- .|+. .+-.++++++|+.++.|+-+-+-.
T Consensus 91 ~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~----cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~ 166 (300)
T TIGR01037 91 TPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLS----CPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP 166 (300)
T ss_pred CcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECC----CCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 35889999999888888888888753 888766522 2332 223456778887777888775431
Q ss_pred --cChhhHHHHHHHcCCCEEEEccc---------cc-----------ccccH----HHHHHHHHHc-CCcEEEEECCCCC
Q 023494 125 --VEPEQRVPDFIKAGADIVSVHCE---------QS-----------STIHL----HRTLNQIKDL-GAKAGVVLNPATS 177 (281)
Q Consensus 125 --~dp~~~i~~~~~aGAd~Itvh~E---------a~-----------~~~~i----~~~l~~ik~~-G~k~Glai~p~t~ 177 (281)
.+...+.+.+.++|+|.+++|.- .. +.... .+.+..+++. ++ .-+...-=+.
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~i-pvi~~GGI~s 245 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDI-PIIGVGGITS 245 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCC-CEEEECCCCC
Confidence 12234566778999999999721 00 00000 1455566654 32 2223332245
Q ss_pred HHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHH-HHHHHHHhhhcCC
Q 023494 178 LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKK-ISDLRRMCLEKGV 225 (281)
Q Consensus 178 ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~k-I~~lr~l~~~~~~ 225 (281)
.+...+++. .+|.|.+-+. --..|..+.+ .+.+.+++.++|+
T Consensus 246 ~~da~~~l~~GAd~V~igr~------~l~~p~~~~~i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 246 FEDALEFLMAGASAVQVGTA------VYYRGFAFKKIIEGLIAFLKAEGF 289 (300)
T ss_pred HHHHHHHHHcCCCceeecHH------HhcCchHHHHHHHHHHHHHHHcCC
Confidence 566666654 4898876322 1112334433 3455566655543
No 337
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.74 E-value=0.62 Score=44.53 Aligned_cols=177 Identities=18% Similarity=0.165 Sum_probs=96.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEE-----ecChh----h----HHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM-----IVEPE----Q----RVPDF 134 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLm-----v~dp~----~----~i~~~ 134 (281)
.+.++++.+......+++-|-+| .+ ||.... ....++..+.+|+= ...+. . -++.+
T Consensus 47 ~l~~~K~lv~~~l~~~asaILld---~~------yG~~a~--~~~~~~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a 115 (340)
T PRK12858 47 DLVDFKLAVSEALTPYASAILLD---PE------YGLPAA--KVRDPNCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRI 115 (340)
T ss_pred hHHHHHHHHHHHHhhCCCEEEEc---cc------cChhhh--cccCCCCCeEEEecccccccCCCCCCccccccccHHHH
Confidence 34455566666666678776554 32 344443 22334566777753 11111 1 25788
Q ss_pred HHcCCCEEEEccccccc----------ccHHHHHHHHHHcCCcEEEE--ECCCC------------CH----HHHHHhhc
Q 023494 135 IKAGADIVSVHCEQSST----------IHLHRTLNQIKDLGAKAGVV--LNPAT------------SL----SAIECVLD 186 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~----------~~i~~~l~~ik~~G~k~Gla--i~p~t------------~i----e~~~~~l~ 186 (281)
.+.|||.|.+|.--.+. ..+.++.++++++|+.+-+. ..|.. .. ...+...+
T Consensus 116 ~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~ 195 (340)
T PRK12858 116 KEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSK 195 (340)
T ss_pred HHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhh
Confidence 99999999998542211 13667788899999988775 22221 11 11222221
Q ss_pred ---cCCEEEE-EeecC----CCCCCc--c-chhHHHHHHHHHHHhhhcCCCCe-EEEecCCChh----cHHHHHHcCC--
Q 023494 187 ---VVDLVLI-MSVNP----GFGGQS--F-IESQVKKISDLRRMCLEKGVNPW-IEVDGGVGPK----NAYKVIEAGA-- 248 (281)
Q Consensus 187 ---~vD~Ilv-msV~p----G~~GQ~--f-~~~~l~kI~~lr~l~~~~~~~~~-I~VDGGI~~e----~i~~~~~aGA-- 248 (281)
.+|++=+ +++++ |+++.. + ..+..+..+++.+.. +.+ |...||++.+ ++....++||
T Consensus 196 ~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~-----~~P~vvlsgG~~~~~f~~~l~~A~~aGa~f 270 (340)
T PRK12858 196 PRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT-----DLPFIFLSAGVSPELFRRTLEFACEAGADF 270 (340)
T ss_pred hccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC-----CCCEEEECCCCCHHHHHHHHHHHHHcCCCc
Confidence 2665532 22222 333211 0 111122233333321 234 5559999854 6677889999
Q ss_pred cEEEEcccccCC
Q 023494 249 NALVAGSAVFGA 260 (281)
Q Consensus 249 D~~VvGSaIf~a 260 (281)
.++.+|+++|+.
T Consensus 271 ~Gvl~GRniwq~ 282 (340)
T PRK12858 271 SGVLCGRATWQD 282 (340)
T ss_pred cchhhhHHHHhh
Confidence 999999999964
No 338
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=95.73 E-value=0.043 Score=49.56 Aligned_cols=79 Identities=15% Similarity=0.240 Sum_probs=60.2
Q ss_pred CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 175 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 175 ~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
..|+|..+.|-+ .+|=+.++-+.....|+. -+++-+++..+.+ .+|+.|.|||+ .+++++++.+|||-+-
T Consensus 30 GDpVelA~~Y~e~GADElvFlDItAs~~gr~---~~~~vv~r~A~~v-----fiPltVGGGI~s~eD~~~ll~aGADKVS 101 (256)
T COG0107 30 GDPVELAKRYNEEGADELVFLDITASSEGRE---TMLDVVERVAEQV-----FIPLTVGGGIRSVEDARKLLRAGADKVS 101 (256)
T ss_pred CChHHHHHHHHHcCCCeEEEEecccccccch---hHHHHHHHHHhhc-----eeeeEecCCcCCHHHHHHHHHcCCCeee
Confidence 478888888765 489988887766555643 3455566655543 37899999999 9999999999999999
Q ss_pred EcccccCCC
Q 023494 253 AGSAVFGAK 261 (281)
Q Consensus 253 vGSaIf~a~ 261 (281)
+.|+-...+
T Consensus 102 INsaAv~~p 110 (256)
T COG0107 102 INSAAVKDP 110 (256)
T ss_pred eChhHhcCh
Confidence 998755433
No 339
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.69 E-value=0.057 Score=49.66 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=63.9
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC----------CHHHHHHcCcCCCCCeeEEEEecC
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI----------GPLVVDALRPVTDLPLDVHLMIVE 126 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~----------G~~~I~~ir~~t~~~idaHLmv~d 126 (281)
...+.+||...+..++.+..+.+.+.|+|.|++.+- .|+... -.++++++|+.+++|+-+.+-...
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~----cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLS----CPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcC----CCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 456889999888888889999999999999988753 344321 224677788777788888666532
Q ss_pred h----hhHHHHHHHcCCCEEEEcc
Q 023494 127 P----EQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 127 p----~~~i~~~~~aGAd~Itvh~ 146 (281)
. .+.++.+.++|+|++++|.
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2 3456778899999999984
No 340
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.072 Score=48.16 Aligned_cols=189 Identities=21% Similarity=0.280 Sum_probs=108.9
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecCh-----h---hHHHHHHHc-C
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEP-----E---QRVPDFIKA-G 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp-----~---~~i~~~~~a-G 138 (281)
-+.+.+..-+.+...|.+.+-+=+---.- .-.-+..+.+.|+.. .+.+.=+.. + +..++..++ +
T Consensus 25 ky~s~~~~~~av~asg~~ivTvAlRR~~~--~~~~~~~~l~~l~~~-----~~~~LPNTaGc~taeEAv~tArlARE~~~ 97 (262)
T COG2022 25 KYPSPAVLAEAVRASGSEIVTVALRRVNA--TRPGGDGILDLLIPL-----GVTLLPNTAGCRTAEEAVRTARLAREALG 97 (262)
T ss_pred CCCCHHHHHHHHHhcCCceEEEEEEeecc--cCCCcchHHHHhhhc-----CcEeCCCccccCCHHHHHHHHHHHHHHcc
Confidence 34455555556667788877664432210 112345555555432 222222222 2 223344454 4
Q ss_pred CCEEEEccccc---ccccHHHHHHHHHHcCCcEEEEECCCC-CHHHHHHhhccCCEEEEEeec-C-CCCCCcc-chhHHH
Q 023494 139 ADIVSVHCEQS---STIHLHRTLNQIKDLGAKAGVVLNPAT-SLSAIECVLDVVDLVLIMSVN-P-GFGGQSF-IESQVK 211 (281)
Q Consensus 139 Ad~Itvh~Ea~---~~~~i~~~l~~ik~~G~k~Glai~p~t-~ie~~~~~l~~vD~IlvmsV~-p-G~~GQ~f-~~~~l~ 211 (281)
-|||-+-.-.. -.++..++++.++.. ++=|...-|-+ +.-.+.+-+..+-...+|.-- | | +|+.. .++.+
T Consensus 98 t~wiKlEVi~d~~tLlPD~~etl~Aae~L-v~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIG-Sg~G~~n~~~l- 174 (262)
T COG2022 98 TNWIKLEVIGDEKTLLPDPIETLKAAEQL-VKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIG-SGLGLQNPYNL- 174 (262)
T ss_pred CCeEEEEEecCCcccCCChHHHHHHHHHH-HhCCCEEeeccCCCHHHHHHHHhcCceEecccccccc-CCcCcCCHHHH-
Confidence 68876553211 134566777776643 23333333332 222344555666666777542 2 4 34433 34443
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+.+++.. ++++.||-||. +.++....+.|+|.+-+-++|-.+.||...++.|+..
T Consensus 175 --~iiie~a-----~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~A 230 (262)
T COG2022 175 --EIIIEEA-----DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALA 230 (262)
T ss_pred --HHHHHhC-----CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHH
Confidence 3344332 58999999999 8899999999999999999999999999888888763
No 341
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.67 E-value=0.47 Score=44.85 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=61.3
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc--c-------CCHHHHHHcCcCCCCCeeEEEEe--cC
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--T-------IGPLVVDALRPVTDLPLDVHLMI--VE 126 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~-------~G~~~I~~ir~~t~~~idaHLmv--~d 126 (281)
..+..||...+...+.+..+.++++|+|.+++-+- ..|+- . .-.+.++++|+.+++|+.+-|-- .+
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~s---cpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~ 178 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIY---YLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSN 178 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCC---CCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCchh
Confidence 56888898877777778888888999999988541 11111 0 11356788888778898886432 13
Q ss_pred hhhHHHHHHHcCCCEEEEccc
Q 023494 127 PEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 127 p~~~i~~~~~aGAd~Itvh~E 147 (281)
...+.+.+.++|+|+|++|.-
T Consensus 179 ~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 179 LANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred HHHHHHHHHHcCCCeEEEECC
Confidence 345667788999999999853
No 342
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.63 E-value=0.59 Score=44.76 Aligned_cols=186 Identities=13% Similarity=0.103 Sum_probs=113.7
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCEEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~It 143 (281)
.|+..+.-.++.+++.+...| +-+-.+. |.+ ..+-..+++...+.. ..|+-+||==......+..++++|.+.|-
T Consensus 26 ~n~e~~~avi~AAee~~sPvI-iq~s~~~~~~~g-~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM 103 (347)
T PRK09196 26 NNLEQVQAIMEAADETDSPVI-LQASAGARKYAG-EPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVM 103 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EECCccHhhhCC-HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 344455566777888877765 5554442 222 122233444444433 47999988554434567889999987776
Q ss_pred Eccccc-------c----cccHHHHHHHHHHcCCcE----EEE--E--------------------CCCCCHHHHHHhhc
Q 023494 144 VHCEQS-------S----TIHLHRTLNQIKDLGAKA----GVV--L--------------------NPATSLSAIECVLD 186 (281)
Q Consensus 144 vh~Ea~-------~----~~~i~~~l~~ik~~G~k~----Gla--i--------------------~p~t~ie~~~~~l~ 186 (281)
+=.-.. + ...-.++++.++..|+.+ |-. . ..-|..+...++.+
T Consensus 104 iDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~ 183 (347)
T PRK09196 104 MDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVK 183 (347)
T ss_pred ecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHH
Confidence 654321 1 112346777788888654 221 1 01366777888876
Q ss_pred --cCCEEE--EEeecCCCCCCccch----hHHHHHHHHHHHhhhcCCCCeEEEecCC-----------------------
Q 023494 187 --VVDLVL--IMSVNPGFGGQSFIE----SQVKKISDLRRMCLEKGVNPWIEVDGGV----------------------- 235 (281)
Q Consensus 187 --~vD~Il--vmsV~pG~~GQ~f~~----~~l~kI~~lr~l~~~~~~~~~I~VDGGI----------------------- 235 (281)
.+|.+. +.++| |..-+...| --+++|+++++.++ ++++..=||=
T Consensus 184 ~TgvD~LAvaiGT~H-G~Yk~~~~p~~~~LdfdrL~eI~~~v~----~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~ 258 (347)
T PRK09196 184 KTQVDALAIAIGTSH-GAYKFTRKPTGDVLAIDRIKEIHARLP----NTHLVMHGSSSVPQELLDIINEYGGDMPETYGV 258 (347)
T ss_pred HhCcCeEhhhhcccc-CCCCCCCCCChhhccHHHHHHHHhcCC----CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCC
Confidence 488764 34555 322111122 23677887777652 3678887776
Q ss_pred ChhcHHHHHHcCCcEEEEcccccC
Q 023494 236 GPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 236 ~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
..|.++++++.|+.-|=+++.+..
T Consensus 259 ~~e~i~~ai~~GI~KINi~Tdl~~ 282 (347)
T PRK09196 259 PVEEIQEGIKHGVRKVNIDTDLRL 282 (347)
T ss_pred CHHHHHHHHHCCCceEEeChHHHH
Confidence 458999999999999999998863
No 343
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.58 E-value=1.1 Score=40.05 Aligned_cols=141 Identities=21% Similarity=0.207 Sum_probs=81.2
Q ss_pred HHHHHHHcCCCEEEEccccccc------ccHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCC
Q 023494 130 RVPDFIKAGADIVSVHCEQSST------IHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGF 200 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~------~~i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~ 200 (281)
+++.+.++|++.|-+..-. +. ++..+.++.+++.+ .++.. +.++ ..+.++...+. +|.|.+.. ++.
T Consensus 24 i~~~L~~~GV~~IEvg~~~-~~~~~p~~~~~~~~i~~l~~~~~~~~~~~-l~~~-~~~~i~~a~~~g~~~i~i~~--~~s 98 (265)
T cd03174 24 IAEALDEAGVDSIEVGSGA-SPKAVPQMEDDWEVLRAIRKLVPNVKLQA-LVRN-REKGIERALEAGVDEVRIFD--SAS 98 (265)
T ss_pred HHHHHHHcCCCEEEeccCc-CccccccCCCHHHHHHHHHhccCCcEEEE-EccC-chhhHHHHHhCCcCEEEEEE--ecC
Confidence 5677888999999888654 24 56788999999887 44433 3322 14455555553 67776542 121
Q ss_pred CC------CccchhHHHHHHHHHHHhhhcCCCCeEEE--ecC--CChh----cHHHHHHcCCcEEEEccc--ccCCCCHH
Q 023494 201 GG------QSFIESQVKKISDLRRMCLEKGVNPWIEV--DGG--VGPK----NAYKVIEAGANALVAGSA--VFGAKDYA 264 (281)
Q Consensus 201 ~G------Q~f~~~~l~kI~~lr~l~~~~~~~~~I~V--DGG--I~~e----~i~~~~~aGAD~~VvGSa--If~a~dp~ 264 (281)
.. ..-.++.++++.+..+...+.|..+.+.+ ..+ .+++ -++.+.++|+|.+.+--. ....++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~ 178 (265)
T cd03174 99 ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVA 178 (265)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHH
Confidence 10 01123356666666666666665544443 344 5544 445667899999887622 22233445
Q ss_pred HHHHHHHHhcC
Q 023494 265 EAIKGIKTSKR 275 (281)
Q Consensus 265 ~~~~~l~~~~~ 275 (281)
+.++.+++...
T Consensus 179 ~li~~l~~~~~ 189 (265)
T cd03174 179 ELVKALREALP 189 (265)
T ss_pred HHHHHHHHhCC
Confidence 55556655443
No 344
>PLN02623 pyruvate kinase
Probab=95.58 E-value=0.22 Score=50.60 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=94.9
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHhhccCCEEEEEeecCCCC-CCccc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLDVVDLVLIMSVNPGFG-GQSFI 206 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl--ai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~-GQ~f~ 206 (281)
.++...+.|+|+|.+-.-- +.+++.++-+.+++.|..+.+ -|.....++.+++++..+|.|++-.-+-|.. | .
T Consensus 283 di~f~~~~~vD~ialSFVr-~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg---~ 358 (581)
T PLN02623 283 DIKFGVENKVDFYAVSFVK-DAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELP---I 358 (581)
T ss_pred HHHHHHHcCCCEEEECCCC-CHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcC---c
Confidence 3555678999999988765 356777788888877766554 4554556788999999999998743332221 2 1
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEec--------CCCh-----hcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDG--------GVGP-----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDG--------GI~~-----e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
++.....+++.+.+.+.| .++.+.. .-++ ..+...+..|+|.+.+|+...--.-|.++++.|.+.
T Consensus 359 ~~v~~~qk~Ii~~~~~~g--KpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I 436 (581)
T PLN02623 359 EEVPLLQEEIIRRCRSMG--KPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 436 (581)
T ss_pred HHHHHHHHHHHHHHHHhC--CCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHH
Confidence 555555566666655544 3443332 1234 378888999999999998876667888888888775
Q ss_pred cC
Q 023494 274 KR 275 (281)
Q Consensus 274 ~~ 275 (281)
+.
T Consensus 437 ~~ 438 (581)
T PLN02623 437 AL 438 (581)
T ss_pred HH
Confidence 43
No 345
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=95.56 E-value=0.44 Score=41.86 Aligned_cols=158 Identities=19% Similarity=0.212 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChh---------hHHHHHHHcCCC
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPE---------QRVPDFIKAGAD 140 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~---------~~i~~~~~aGAd 140 (281)
++++.++.+.+.|++.+-+ .|.+++..++. .+..+.++.-+.-|. .-++.+.+.|||
T Consensus 18 ~i~~~~~~a~~~~~~av~v-------------~p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAd 84 (203)
T cd00959 18 DIRKLCDEAKEYGFAAVCV-------------NPCFVPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIADGAD 84 (203)
T ss_pred HHHHHHHHHHHcCCCEEEE-------------cHHHHHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCC
Confidence 4444555555656665533 24555554442 234567777776553 126678889999
Q ss_pred EEEEccccc---c--cccHHHHHHHHHHc--CCcEEE--EECCCCCHHHHHHhhc-----cCCEEEEEeecCCCCCCccc
Q 023494 141 IVSVHCEQS---S--TIHLHRTLNQIKDL--GAKAGV--VLNPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 141 ~Itvh~Ea~---~--~~~i~~~l~~ik~~--G~k~Gl--ai~p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~f~ 206 (281)
-|-++..-. + .+...+.+..+++. |+.+-+ ....- ..+.+..... .+|+|=. ..||.. .
T Consensus 85 evdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l-~~~~i~~a~ria~e~GaD~IKT---sTG~~~---~ 157 (203)
T cd00959 85 EIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL-TDEEIIKACEIAIEAGADFIKT---STGFGP---G 157 (203)
T ss_pred EEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC-CHHHHHHHHHHHHHhCCCEEEc---CCCCCC---C
Confidence 999985431 0 12233444444443 433322 22222 2233333322 2788843 345532 3
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
+.+++.++.+++.++ .+++|-+.|||+ .+.+.+++++|+|-+
T Consensus 158 ~at~~~v~~~~~~~~---~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 158 GATVEDVKLMKEAVG---GRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred CCCHHHHHHHHHHhC---CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 356777777777765 247899999999 778889999999854
No 346
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.56 E-value=0.15 Score=51.04 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--hHHHHHHHcCCCEEEEccccc-
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--QRVPDFIKAGADIVSVHCEQS- 149 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--~~i~~~~~aGAd~Itvh~Ea~- 149 (281)
.+.++.+.++|+|.||+|.-+|+-. +-.+.+++||+..+ ++.++.-|.. +-...+.++|||.|-+.....
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~----~~~~~i~~ik~~~~---~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSI----YQIDMIKKLKSNYP---HVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCch----HHHHHHHHHHhhCC---CceEEECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 5667888899999999999888632 22568899887521 3445554433 246678899999997632110
Q ss_pred ---c-------ccc---HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC
Q 023494 150 ---S-------TIH---LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG 199 (281)
Q Consensus 150 ---~-------~~~---i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG 199 (281)
+ .++ +.++.+.+++.|+.+...=.-.|+-+..+.+.-.+|.|++.+...|
T Consensus 316 ~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~ 378 (495)
T PTZ00314 316 ICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSLLAG 378 (495)
T ss_pred ccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhcc
Confidence 0 112 2345566666675433321224677777777777999988665544
No 347
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=95.53 E-value=0.46 Score=43.15 Aligned_cols=171 Identities=19% Similarity=0.265 Sum_probs=106.0
Q ss_pred HHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC--CCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 76 VKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 76 l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~--t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
++.+-.+|.||+-+| |.-.||- ...++.+|+.. ...+=.|..-+.+|. .++++.+.||..+.++.-. +.++
T Consensus 31 ~Ei~A~aGfDwl~iD---~EHapnd--~~sl~~qL~a~~~~~~~pvVR~p~g~~~-~Ikq~LD~GAqtlliPmV~-s~eq 103 (255)
T COG3836 31 AEILATAGFDWLLID---GEHAPND--LQSLLHQLQAVAAYASPPVVRPPVGDPV-MIKQLLDIGAQTLLIPMVD-TAEQ 103 (255)
T ss_pred HHHHHhcCCCEEEec---ccccCcc--HHHHHHHHHHhhccCCCCeeeCCCCCHH-HHHHHHccccceeeeeccC-CHHH
Confidence 445667899999776 4334653 22334444432 234445555566655 6888999999999988654 2344
Q ss_pred HHHHHHHHH---------------------------HcCCcEE--EEECCCCCHHHHHHhhc--cCCEEEEEee----cC
Q 023494 154 LHRTLNQIK---------------------------DLGAKAG--VVLNPATSLSAIECVLD--VVDLVLIMSV----NP 198 (281)
Q Consensus 154 i~~~l~~ik---------------------------~~G~k~G--lai~p~t~ie~~~~~l~--~vD~IlvmsV----~p 198 (281)
.+.+++..| ..+-... +-+...+-++.+..++. .+|.|.+... .-
T Consensus 104 Ar~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~ 183 (255)
T COG3836 104 ARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAGLDNLDAIAAVEGVDGVFIGPADLAASL 183 (255)
T ss_pred HHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHHHHHHHHHHccCCCCeEEECHHHHHHHc
Confidence 444443322 2222222 33443445566666654 4888887533 34
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
|.-|++-.|++-+-|+.+...+..+|...-| =-.+++.++.+.+.|+..+++|+.
T Consensus 184 G~~gn~~hpeV~~aI~~~~~~i~aaGKaagi---l~~~p~~a~~yl~lGa~fvavG~D 238 (255)
T COG3836 184 GHLGNPGHPEVQAAIEHIIARIRAAGKAAGI---LAADPADARRYLALGATFVAVGSD 238 (255)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCcccc---ccCCHHHHHHHHHhCCeEEEEecc
Confidence 6677777888888888877777665543211 224578899999999999999954
No 348
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=95.49 E-value=0.2 Score=47.76 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=32.9
Q ss_pred CCeEEEecCCC-hhcHHHHHHcC-CcEEEEcccccCCCCHH
Q 023494 226 NPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVFGAKDYA 264 (281)
Q Consensus 226 ~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaIf~a~dp~ 264 (281)
++++.+-|||+ ++.+.++++.| +|.+-+|+.+...++.-
T Consensus 285 ~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~ 325 (343)
T cd04734 285 DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLV 325 (343)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHH
Confidence 36888999995 89999999876 99999999999877654
No 349
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=95.48 E-value=0.95 Score=38.08 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=93.4
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEee---eCccccccc--CCHHHHHHcCcCCCCCeeEEEEecCh----h-hHHHHHHHcC
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVM---DGRFVPNIT--IGPLVVDALRPVTDLPLDVHLMIVEP----E-QRVPDFIKAG 138 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDIm---DG~fvpn~~--~G~~~I~~ir~~t~~~idaHLmv~dp----~-~~i~~~~~aG 138 (281)
+-|....++.+.+.|++++++||. ||.++-... -=.++++.+++ +..+.++++-.+. . ..++.+.+.|
T Consensus 12 pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~--~~~i~leiK~~~~~~~~~~~l~~~i~~~~ 89 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKG--GVGLNIELKEPTRYPGLEAKVAELLREYG 89 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhccc--CcEEEEEECCCCCchhHHHHHHHHHHHcC
Confidence 357778889999999999999987 886553211 11345555554 5678888888642 1 2344556665
Q ss_pred -CCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHH--HhhccCCEEEEEeecCCCCCCccchhHHHHH
Q 023494 139 -ADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIE--CVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 139 -Ad~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~--~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
.+.+.+.... .+.++.+++. ++++|+.+......+... .....++.+. +.+.. ..+ +.+
T Consensus 90 ~~~~v~i~s~~------~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~--~~~---~~i 153 (189)
T cd08556 90 LEERVVVSSFD------HEALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVN-----PHYKL--LTP---ELV 153 (189)
T ss_pred CcCCEEEEeCC------HHHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEc-----cChhh--CCH---HHH
Confidence 5777777652 1456666664 678888776544433221 1111234332 22111 222 233
Q ss_pred HHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
+.+++ +| .++.+-+ ++ .+.+..+.+.|+|.++
T Consensus 154 ~~~~~----~g--~~v~~wt-vn~~~~~~~~~~~GVdgI~ 186 (189)
T cd08556 154 RAAHA----AG--LKVYVWT-VNDPEDARRLLALGVDGII 186 (189)
T ss_pred HHHHH----cC--CEEEEEc-CCCHHHHHHHHHCCCCEEe
Confidence 33333 33 4444443 44 8899999999999986
No 350
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=95.45 E-value=0.33 Score=44.60 Aligned_cols=176 Identities=16% Similarity=0.213 Sum_probs=93.8
Q ss_pred EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc--CC
Q 023494 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA--GA 139 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a--GA 139 (281)
|..-|+....+..+.+.+.|+|+| ||==+ ..+.- .-=..+|+.+++.++.|+-+ -+.+|. .++.+.++ |+
T Consensus 19 ~~~~d~~~i~~~A~~~~~~GAdiI--DVg~~-~~~~eE~~r~~~~v~~l~~~~~~plsI--DT~~~~-v~eaaL~~~~G~ 92 (261)
T PRK07535 19 IEAKDAAFIQKLALKQAEAGADYL--DVNAG-TAVEEEPETMEWLVETVQEVVDVPLCI--DSPNPA-AIEAGLKVAKGP 92 (261)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEE--EECCC-CCchhHHHHHHHHHHHHHHhCCCCEEE--eCCCHH-HHHHHHHhCCCC
Confidence 344577677777777788899986 43322 11110 11122455666555666543 445655 56667776 98
Q ss_pred CEEEE-cccccccccHHHHHHHHHHcCCcEEEEEC--CCCC------HHHHHHhhcc-----C--CEEEEEeecCCCC--
Q 023494 140 DIVSV-HCEQSSTIHLHRTLNQIKDLGAKAGVVLN--PATS------LSAIECVLDV-----V--DLVLIMSVNPGFG-- 201 (281)
Q Consensus 140 d~Itv-h~Ea~~~~~i~~~l~~ik~~G~k~Glai~--p~t~------ie~~~~~l~~-----v--D~IlvmsV~pG~~-- 201 (281)
++|-= -.+ .....+.+..++++|+.+.+... .++| ++.+++.++. + +-|+ ++||++
T Consensus 93 ~iINsIs~~---~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~Ii---lDPgi~~~ 166 (261)
T PRK07535 93 PLINSVSAE---GEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIY---IDPLVLPL 166 (261)
T ss_pred CEEEeCCCC---CccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEE---EeCCCCcc
Confidence 87632 222 11245778888999998877544 2233 2333333321 3 2333 388875
Q ss_pred --CCccchhHHHHHHHHHHHhhhcCCCCeEE---EecCC------ChhcHHHHHHcCCcEEEE
Q 023494 202 --GQSFIESQVKKISDLRRMCLEKGVNPWIE---VDGGV------GPKNAYKVIEAGANALVA 253 (281)
Q Consensus 202 --GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~---VDGGI------~~e~i~~~~~aGAD~~Vv 253 (281)
++...-++++.++.+++.++ +..+.+. +-.|+ |.-=+..+.++|.|..|+
T Consensus 167 ~~~~~~~~~~l~~i~~l~~~~p--g~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~~aI~ 227 (261)
T PRK07535 167 SAAQDAGPEVLETIRRIKELYP--KVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDSAIL 227 (261)
T ss_pred cCChHHHHHHHHHHHHHHHhCC--CCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCCEEee
Confidence 22233455777777776542 2222221 12333 222344568899886655
No 351
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.45 E-value=0.4 Score=45.31 Aligned_cols=136 Identities=19% Similarity=0.161 Sum_probs=87.3
Q ss_pred CCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-------------cCCHHHHHHcCcCCCCCeeEE
Q 023494 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-------------TIGPLVVDALRPVTDLPLDVH 121 (281)
Q Consensus 55 ~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-------------~~G~~~I~~ir~~t~~~idaH 121 (281)
..+.-+...|...|+..+.++.+.+.+.|+|.| |+-=|--.++. .+=.++++++++..+.|+-|-
T Consensus 52 ~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~I--DlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvK 129 (318)
T TIGR00742 52 PEESPVALQLGGSDPNDLAKCAKIAEKRGYDEI--NLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVK 129 (318)
T ss_pred CCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEE--EEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEE
Confidence 345568899999999999999999998899875 44334212211 112455667777677888886
Q ss_pred EEe--cCh------hhHHHHHHHcCCCEEEEccccc-----c-cc-------cHHHHHHHHHHcCCcEEEEECCC-CCHH
Q 023494 122 LMI--VEP------EQRVPDFIKAGADIVSVHCEQS-----S-TI-------HLHRTLNQIKDLGAKAGVVLNPA-TSLS 179 (281)
Q Consensus 122 Lmv--~dp------~~~i~~~~~aGAd~Itvh~Ea~-----~-~~-------~i~~~l~~ik~~G~k~Glai~p~-t~ie 179 (281)
+-+ .+. .++++.+.++|++.+++|.-.. + .. +. +.+..+++.--.+=+..|-+ ...+
T Consensus 130 iR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~-~~i~~vk~~~~~ipVi~NGdI~s~~ 208 (318)
T TIGR00742 130 HRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRY-ERVYQLKKDFPHLTIEINGGIKNSE 208 (318)
T ss_pred EecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhH-HHHHHHHHhCCCCcEEEECCcCCHH
Confidence 655 221 2456778899999999998631 0 00 12 34555655321222333433 5667
Q ss_pred HHHHhhccCCEEEE
Q 023494 180 AIECVLDVVDLVLI 193 (281)
Q Consensus 180 ~~~~~l~~vD~Ilv 193 (281)
.+.+.+..+|.|++
T Consensus 209 da~~~l~g~dgVMi 222 (318)
T TIGR00742 209 QIKQHLSHVDGVMV 222 (318)
T ss_pred HHHHHHhCCCEEEE
Confidence 77777778998876
No 352
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.43 E-value=0.78 Score=42.77 Aligned_cols=182 Identities=15% Similarity=0.186 Sum_probs=112.3
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
.|+..+.-.++.+++.+...| +-+-.++. . -.|.+ +++.+.+..+.|+-+||==......+..++++|.+.|
T Consensus 26 ~n~e~~~avi~AAee~~sPvI-iq~~~~~~-~--~~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~GftSV 101 (284)
T PRK12737 26 HNLETLQVVVETAAELRSPVI-LAGTPGTF-S--YAGTDYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGIRSV 101 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EEcCccHH-h--hCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeE
Confidence 344455566777788777765 44443321 0 12323 3444444456899999854444457888999998866
Q ss_pred EEcccccc----cccHHHHHHHHHHcCCcE----EEEE----------C--CCCCHHHHHHhhcc--CCEEEE--EeecC
Q 023494 143 SVHCEQSS----TIHLHRTLNQIKDLGAKA----GVVL----------N--PATSLSAIECVLDV--VDLVLI--MSVNP 198 (281)
Q Consensus 143 tvh~Ea~~----~~~i~~~l~~ik~~G~k~----Glai----------~--p~t~ie~~~~~l~~--vD~Ilv--msV~p 198 (281)
-+=+-..+ ...-.++.+.++..|+-+ |-.= + .-|..+..+++.+. +|.+.+ .++|-
T Consensus 102 MiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG 181 (284)
T PRK12737 102 MIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHG 181 (284)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCcccc
Confidence 55433222 123457778888888755 2110 0 13566777888764 887654 34442
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEcccccC
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
-+.+.+ .-.+++|+++++.. ++++..=|| +..+.++++++.|+.-+=+++.+..
T Consensus 182 ~y~~~p--~Ld~~~L~~I~~~~-----~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~ 237 (284)
T PRK12737 182 LYKGEP--KLDFERLAEIREKV-----SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKI 237 (284)
T ss_pred ccCCCC--cCCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHH
Confidence 222311 12367777777765 367877775 4578999999999999999998853
No 353
>PRK06267 hypothetical protein; Provisional
Probab=95.43 E-value=0.72 Score=44.03 Aligned_cols=182 Identities=14% Similarity=0.090 Sum_probs=97.4
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~ 146 (281)
.++.++.++++.+.+.|++.+++ .|.+......=.++++.+++..+..+-+.+-..++... .....+| ++.-.
T Consensus 63 ~s~eeI~eea~~~~~~Gv~~~~l---sgG~~~~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~-~~~~l~G---v~g~~ 135 (350)
T PRK06267 63 RRVESILAEAILMKRIGWKLEFI---SGGYGYTTEEINDIAEMIAYIQGCKQYLNVGIIDFLNI-NLNEIEG---VVGAV 135 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE---ecCCCCCHHHHHHHHHHHHHhhCCceEeecccCCHHHH-hhccccC---ceeee
Confidence 45667777788888888886553 34443222111234455555444334444444554322 1122233 33323
Q ss_pred ccc------------ccccHHHHHHHHHHcCCcE--EEEECCCCCHHHHHHhhc-----cCCEEEEE--eecCCCC--CC
Q 023494 147 EQS------------STIHLHRTLNQIKDLGAKA--GVVLNPATSLSAIECVLD-----VVDLVLIM--SVNPGFG--GQ 203 (281)
Q Consensus 147 Ea~------------~~~~i~~~l~~ik~~G~k~--Glai~p~t~ie~~~~~l~-----~vD~Ilvm--sV~pG~~--GQ 203 (281)
|+. +.++..+.++.+++.|+++ |+.+.++...+.+.+.+. .+|.+.+. .-.||.. ++
T Consensus 136 ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~ 215 (350)
T PRK06267 136 ETVNPKLHREICPGKPLDKIKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENK 215 (350)
T ss_pred ecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCC
Confidence 321 1334667888899999995 456644544555554332 26766443 3456642 22
Q ss_pred c-c-chhHHHHHHHHHHHhhhcCCCCeEEEecCC--ChhcHHHHHHcCCcEE----EEcccccCC
Q 023494 204 S-F-IESQVKKISDLRRMCLEKGVNPWIEVDGGV--GPKNAYKVIEAGANAL----VAGSAVFGA 260 (281)
Q Consensus 204 ~-f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI--~~e~i~~~~~aGAD~~----VvGSaIf~a 260 (281)
+ . ..+.++-|.-.|-++++ ..| +.||- +...+....-+|||.+ ..|-+++..
T Consensus 216 ~~~s~~e~lr~ia~~Rl~lP~----~~I-~~~~~~~~l~~~~~~~~aGaN~i~~~p~~g~ylt~~ 275 (350)
T PRK06267 216 PSVTTLEYMNWVSSVRLNFPK----IKI-ITGTWVDKLTNIGPLIMSGSNVITKFPLFSMYGTKE 275 (350)
T ss_pred CCCCHHHHHHHHHHHHHHCCC----CCc-chhhHhHhcchhhHHhhcCcceeeccchhccCcccC
Confidence 2 1 13445556666666543 456 55552 2333344567999999 889888864
No 354
>PLN02535 glycolate oxidase
Probab=95.42 E-value=0.17 Score=48.81 Aligned_cols=97 Identities=13% Similarity=0.217 Sum_probs=62.7
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
+.++++++. +..+.+- --...+..+...+ .+|.|.+- +.|-....+-+.+++-|.++++... .+++|.+||
T Consensus 213 ~~i~~lr~~~~~PvivK--gV~~~~dA~~a~~~GvD~I~vs--n~GGr~~d~~~~t~~~L~ev~~av~---~~ipVi~dG 285 (364)
T PLN02535 213 KDIEWLRSITNLPILIK--GVLTREDAIKAVEVGVAGIIVS--NHGARQLDYSPATISVLEEVVQAVG---GRVPVLLDG 285 (364)
T ss_pred HHHHHHHhccCCCEEEe--cCCCHHHHHHHHhcCCCEEEEe--CCCcCCCCCChHHHHHHHHHHHHHh---cCCCEEeeC
Confidence 456777764 3444432 1134455555555 48998763 2232222344666777777766543 247899999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
||. ..++.+.+..|||.+.+|+.++.
T Consensus 286 GIr~g~Dv~KALalGA~aV~vGr~~l~ 312 (364)
T PLN02535 286 GVRRGTDVFKALALGAQAVLVGRPVIY 312 (364)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHHHh
Confidence 999 66888999999999999998653
No 355
>PRK15452 putative protease; Provisional
Probab=95.36 E-value=0.094 Score=51.80 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=76.3
Q ss_pred EecChhhHHHHHHHcCCCEEEEccccc---------ccccHHHHHHHHHHcCCcEEEEECCCCCH---HHHHHhhc----
Q 023494 123 MIVEPEQRVPDFIKAGADIVSVHCEQS---------STIHLHRTLNQIKDLGAKAGVVLNPATSL---SAIECVLD---- 186 (281)
Q Consensus 123 mv~dp~~~i~~~~~aGAd~Itvh~Ea~---------~~~~i~~~l~~ik~~G~k~Glai~p~t~i---e~~~~~l~---- 186 (281)
-+.+++ -++.++++|||.|.+..+.. +.+++.+.++.++++|+++.+++|.-..- +.+.++++
T Consensus 9 pag~~e-~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 9 PAGTLK-NMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred ECCCHH-HHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHh
Confidence 445544 45667899999999976421 23568899999999999999998744333 33333333
Q ss_pred -cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh---hcHHHHHHcCCcEEEEccccc
Q 023494 187 -VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP---KNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 187 -~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~---e~i~~~~~aGAD~~VvGSaIf 258 (281)
.+|-|++- +|| . +..+++.. ++.++.+|-..|. ..+..+.+.|++-+|+-+-+.
T Consensus 88 ~gvDgvIV~--d~G---------~---l~~~ke~~----p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELs 145 (443)
T PRK15452 88 MKPDALIMS--DPG---------L---IMMVREHF----PEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELS 145 (443)
T ss_pred CCCCEEEEc--CHH---------H---HHHHHHhC----CCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCC
Confidence 25666652 222 2 33334332 3467888887764 455667889999999887663
No 356
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=95.33 E-value=0.3 Score=44.47 Aligned_cols=123 Identities=13% Similarity=0.197 Sum_probs=75.9
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---C-CCCeeEEEE----ecCh----------
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---T-DLPLDVHLM----IVEP---------- 127 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t-~~~idaHLm----v~dp---------- 127 (281)
|++ ..+++.++.+.+.|.|.+++.+-....-+....+...++++|+. . +..+.+|.- ..+|
T Consensus 7 ~~~-~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~ 85 (279)
T cd00019 7 AAG-FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIE 85 (279)
T ss_pred ccc-ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHH
Confidence 345 78999999999999999999854332222222355677777653 2 456666631 1233
Q ss_pred --hhHHHHHHHcCCCEEEEcccccc----c-------ccHHHHHHHHHHcCCcEEEEECCCC------CHHHHHHhhccC
Q 023494 128 --EQRVPDFIKAGADIVSVHCEQSS----T-------IHLHRTLNQIKDLGAKAGVVLNPAT------SLSAIECVLDVV 188 (281)
Q Consensus 128 --~~~i~~~~~aGAd~Itvh~Ea~~----~-------~~i~~~l~~ik~~G~k~Glai~p~t------~ie~~~~~l~~v 188 (281)
.+.++.+.+.|++.+.+|.-... . +.+.++.+.++++|+++++--.+.. ..+.+.++++.+
T Consensus 86 ~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v 165 (279)
T cd00019 86 RLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLI 165 (279)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhc
Confidence 12456677889999999865321 0 1244455555677888888643332 445666777766
Q ss_pred C
Q 023494 189 D 189 (281)
Q Consensus 189 D 189 (281)
|
T Consensus 166 ~ 166 (279)
T cd00019 166 K 166 (279)
T ss_pred C
Confidence 5
No 357
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=95.32 E-value=0.22 Score=45.77 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=57.5
Q ss_pred HHHHHHHHcCC---cEEEEECCCCCHHHHHHhhc-c-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhh---hcC-CC
Q 023494 156 RTLNQIKDLGA---KAGVVLNPATSLSAIECVLD-V-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCL---EKG-VN 226 (281)
Q Consensus 156 ~~l~~ik~~G~---k~Glai~p~t~ie~~~~~l~-~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~---~~~-~~ 226 (281)
+.++.+++.-- ..-+.+...+ ++...+.+. . +|.|.+ + ++.++.++....+.+.+. ..+ .+
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~-~~~~~~~~~~~~~d~irl---D------s~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDT-LEEALEAAKAGGADGIRL---D------SGSPEELDPAVLILKARAHLDGKGLPR 239 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCC-HHHHHHHHhcCCCCEEEe---C------CCChHHHHHHHHHHHHHHhhhhcCCCc
Confidence 45666665432 2224444444 655555544 3 677654 1 122333333333322221 111 24
Q ss_pred CeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 227 PWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 227 ~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
..|++-||||++++..+.+.|+|++.+|+.+++.
T Consensus 240 ~~i~~Sggi~~~~i~~~~~~gvd~~gvG~~~~~~ 273 (281)
T cd00516 240 VKIEASGGLDEENIRAYAETGVDVFGVGTLLHSA 273 (281)
T ss_pred eEEEEeCCCCHHHHHHHHHcCCCEEEeCcccccC
Confidence 6799999999999999999999999999999875
No 358
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.26 E-value=0.91 Score=42.34 Aligned_cols=182 Identities=16% Similarity=0.215 Sum_probs=111.8
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHH----HHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV----VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~----I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
.|+..+.-.++.+++.+...| +-+-.++. . -.|.+. ++.+.+....|+-+||==....+.+..++++|.+.|
T Consensus 26 ~n~e~~~avi~AAee~~sPvI-lq~~~~~~-~--~~g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftSV 101 (284)
T PRK12857 26 NNMEIVQAIVAAAEAEKSPVI-IQASQGAI-K--YAGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTSV 101 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EEechhHh-h--hCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeE
Confidence 344455566777888777765 44444421 1 023332 333334456899998854433457888999998877
Q ss_pred EEccccccc----ccHHHHHHHHHHcCCcE----EEE--------ECC----CCCHHHHHHhhc--cCCEEEE--EeecC
Q 023494 143 SVHCEQSST----IHLHRTLNQIKDLGAKA----GVV--------LNP----ATSLSAIECVLD--VVDLVLI--MSVNP 198 (281)
Q Consensus 143 tvh~Ea~~~----~~i~~~l~~ik~~G~k~----Gla--------i~p----~t~ie~~~~~l~--~vD~Ilv--msV~p 198 (281)
-+=.-..+. ..-.++++.++..|+-+ |-. ... -|..+..+++.+ .+|.+.+ .++|-
T Consensus 102 M~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG 181 (284)
T PRK12857 102 MIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHG 181 (284)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCcccc
Confidence 765443221 22456777888888655 221 011 356677777775 4887654 44553
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEcccccC
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+.|.+ .-.+++|+++++.+ ++++..=|| +..+.++++++.|+.-+=+++.+..
T Consensus 182 ~y~~~p--~Ld~~~L~~i~~~~-----~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~ 237 (284)
T PRK12857 182 PYKGEP--KLDFDRLAKIKELV-----NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIRE 237 (284)
T ss_pred ccCCCC--cCCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHH
Confidence 233322 12356677777664 367777665 5588999999999999999998864
No 359
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=95.26 E-value=0.91 Score=43.49 Aligned_cols=191 Identities=12% Similarity=0.114 Sum_probs=114.5
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|..=+.|+..+.-.++.+++.+...| +-+-.++ |.+ ..+-..+++.+.+.. ..|+-+||==......+..++++|
T Consensus 19 ~AfN~~n~e~~~aii~AAEe~~sPvI-lq~s~~~~~~~g-~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~G 96 (347)
T TIGR01521 19 PAFNVNNMEQMRAIMEAADKTDSPVI-LQASRGARSYAG-APFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLG 96 (347)
T ss_pred EEEeeCCHHHHHHHHHHHHHhCCCEE-EECCcchhhhCC-HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcC
Confidence 33333455555566777888877765 4444432 222 111223444444444 489999986544445788899999
Q ss_pred CCEEEEccccc-------c----cccHHHHHHHHHHcCCcE----EEE--E--------------------CCCCCHHHH
Q 023494 139 ADIVSVHCEQS-------S----TIHLHRTLNQIKDLGAKA----GVV--L--------------------NPATSLSAI 181 (281)
Q Consensus 139 Ad~Itvh~Ea~-------~----~~~i~~~l~~ik~~G~k~----Gla--i--------------------~p~t~ie~~ 181 (281)
.+.|-+=.-.. + ...-+++++.++..|+-+ |-. . ..-|..+..
T Consensus 97 FtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA 176 (347)
T TIGR01521 97 FTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEA 176 (347)
T ss_pred CCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHH
Confidence 87776654321 1 112346777788777543 221 1 013566778
Q ss_pred HHhhc--cCCEEEE--EeecCCCCCCccch----hHHHHHHHHHHHhhhcCCCCeEEEecCCC-----------------
Q 023494 182 ECVLD--VVDLVLI--MSVNPGFGGQSFIE----SQVKKISDLRRMCLEKGVNPWIEVDGGVG----------------- 236 (281)
Q Consensus 182 ~~~l~--~vD~Ilv--msV~pG~~GQ~f~~----~~l~kI~~lr~l~~~~~~~~~I~VDGGI~----------------- 236 (281)
+++.+ .+|.+.+ .++|--+.+ ...| --+++|+++++.++ ++++..=||=.
T Consensus 177 ~~Fv~~TgvD~LAvaiGt~HG~Yk~-~~~p~~~~Ld~~rL~eI~~~v~----~vPLVLHGgSG~p~~~~~~~~~~~~~~~ 251 (347)
T TIGR01521 177 ADFVKKTKVDALAVAIGTSHGAYKF-TRKPTGEVLAIQRIEEIHARLP----DTHLVMHGSSSVPQEWLDIINEYGGEIK 251 (347)
T ss_pred HHHHHHHCcCEEehhcccccCCcCC-CCCCChhhcCHHHHHHHHccCC----CCCEEEeCCCCCchHhhHHHHhhccccc
Confidence 88876 4887653 444422222 1122 23677777776652 36787777665
Q ss_pred ------hhcHHHHHHcCCcEEEEcccccC
Q 023494 237 ------PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 237 ------~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+.++++++.|+.-|=+++.+..
T Consensus 252 ~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~ 280 (347)
T TIGR01521 252 ETYGVPVEEIVEGIKYGVRKVNIDTDLRL 280 (347)
T ss_pred ccCCCCHHHHHHHHHCCCeeEEeChHHHH
Confidence 58999999999999999998864
No 360
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=95.25 E-value=1.7 Score=40.49 Aligned_cols=188 Identities=16% Similarity=0.169 Sum_probs=114.6
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCcCC--CCCeeEEEEecChhhHHHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPVT--DLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~~t--~~~idaHLmv~dp~~~i~~~~ 135 (281)
|..=+.|+..+.-.++.+++.+...| +-+-.|++ . ...|.+ +++.+.+.. +.|+-+||==....+.+..++
T Consensus 21 ~AfN~~n~e~~~avi~AAe~~~sPvI-iq~~~~~~-~-~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai 97 (285)
T PRK07709 21 GQFNMNNLEWTQAILAAAEEEKSPVI-LGVSEGAA-R-HMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAI 97 (285)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEE-EEcCcchh-h-hcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHH
Confidence 33344455555566778888777765 44444321 0 101322 344444333 378999885544445788899
Q ss_pred HcCCCEEEEcccccc----cccHHHHHHHHHHcCCcE----EEE--------E--CCCCCHHHHHHhhc--cCCEEEE--
Q 023494 136 KAGADIVSVHCEQSS----TIHLHRTLNQIKDLGAKA----GVV--------L--NPATSLSAIECVLD--VVDLVLI-- 193 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~----~~~i~~~l~~ik~~G~k~----Gla--------i--~p~t~ie~~~~~l~--~vD~Ilv-- 193 (281)
++|.+.|-+=.-..+ ...-+++++.++..|+-+ |-. - ..-|..+...++.+ .+|.+.+
T Consensus 98 ~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvai 177 (285)
T PRK07709 98 DAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPAL 177 (285)
T ss_pred HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEee
Confidence 999887766543322 123457778888888654 221 0 01377788888876 4897654
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.++|--+.+.+ .--+++|+++++.+ ++++..=||-+ .+.++++++.|+.-+=+++.+..
T Consensus 178 Gt~HG~Y~~~p--~L~~~~L~~I~~~~-----~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 238 (285)
T PRK07709 178 GSVHGPYKGEP--NLGFAEMEQVRDFT-----GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQI 238 (285)
T ss_pred cccccCcCCCC--ccCHHHHHHHHHHH-----CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Confidence 34442222311 12256777776654 37888877644 78999999999999999998753
No 361
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=95.25 E-value=0.56 Score=44.29 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=82.9
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCccccc---------------ccCCHHHHHHcCcCCCCCeeEE
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------------ITIGPLVVDALRPVTDLPLDVH 121 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---------------~~~G~~~I~~ir~~t~~~idaH 121 (281)
+..+++.|...|+..+.+..+.+.+.|+|.| |+-=| .|+ ..+-.++++.+|+..+.|+.+-
T Consensus 64 ~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~I--dlN~g--CP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vK 139 (321)
T PRK10415 64 PGIRTVQIAGSDPKEMADAARINVESGAQII--DINMG--CPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLK 139 (321)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEE--EEeCC--CCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEE
Confidence 4457799999999999999988888889875 43333 243 1222344556666667787775
Q ss_pred EEe--c----ChhhHHHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHhhc--c
Q 023494 122 LMI--V----EPEQRVPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD--V 187 (281)
Q Consensus 122 Lmv--~----dp~~~i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~G~k~Glai~p~-t~ie~~~~~l~--~ 187 (281)
+-. . +..++++.+.++|+|.+++|.... ...+ .+.++.+++.- ++=|..|-+ +..+.++++++ .
T Consensus 140 iR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~-~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~g 217 (321)
T PRK10415 140 IRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAE-YDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTG 217 (321)
T ss_pred EEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcC-hHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccC
Confidence 432 1 223456677899999999997631 0122 35666666642 222333333 56777788776 4
Q ss_pred CCEEEE
Q 023494 188 VDLVLI 193 (281)
Q Consensus 188 vD~Ilv 193 (281)
+|.|++
T Consensus 218 adgVmi 223 (321)
T PRK10415 218 ADALMI 223 (321)
T ss_pred CCEEEE
Confidence 898876
No 362
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=95.25 E-value=0.92 Score=42.77 Aligned_cols=184 Identities=14% Similarity=0.174 Sum_probs=110.3
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
|+..+.-.++.+++.+...| +-+-.++ |.+ ..+-..+++.+.+.. ..|+.+||==..-.+.+..++++|.+.|-+
T Consensus 26 n~e~~~avi~AAe~~~sPvI-lq~s~~~~~~~g-~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~ 103 (307)
T PRK05835 26 NFEMLNAIFEAGNEENSPLF-IQASEGAIKYMG-IDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMI 103 (307)
T ss_pred CHHHHHHHHHHHHHHCCCEE-EEcCccHHhhCC-hHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 33344455677777777764 4443432 111 111112444444444 389999985543345788899999887776
Q ss_pred cccccc----cccHHHHHHHHHHcCCcE----EEEE----------CC--CCCHHHHHHhhc--cCCEEEE--EeecCCC
Q 023494 145 HCEQSS----TIHLHRTLNQIKDLGAKA----GVVL----------NP--ATSLSAIECVLD--VVDLVLI--MSVNPGF 200 (281)
Q Consensus 145 h~Ea~~----~~~i~~~l~~ik~~G~k~----Glai----------~p--~t~ie~~~~~l~--~vD~Ilv--msV~pG~ 200 (281)
=.-..+ ...-.++.+.++.+|+-+ |-.= +. -|+.+...++.. .+|.+.+ .++| |.
T Consensus 104 DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~H-G~ 182 (307)
T PRK05835 104 DASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSH-GA 182 (307)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccc-cc
Confidence 544322 122457778888888654 2210 01 356677778776 4898643 3444 22
Q ss_pred CCCccchh-HHHHHHHHHHHhhhcCCCCeEEEecCCC--hh---------------------cHHHHHHcCCcEEEEccc
Q 023494 201 GGQSFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG--PK---------------------NAYKVIEAGANALVAGSA 256 (281)
Q Consensus 201 ~GQ~f~~~-~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e---------------------~i~~~~~aGAD~~VvGSa 256 (281)
..++-.|. .+++|+++++.+ ++++..=||=+ .+ .++++++.|+.-+=+++.
T Consensus 183 Yk~~~~p~L~f~~L~~I~~~~-----~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~ 257 (307)
T PRK05835 183 FKFKGEPKLDFERLQEVKRLT-----NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTD 257 (307)
T ss_pred cCCCCCCccCHHHHHHHHHHh-----CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChH
Confidence 21101222 367777777765 37888878766 33 899999999999999998
Q ss_pred ccC
Q 023494 257 VFG 259 (281)
Q Consensus 257 If~ 259 (281)
+..
T Consensus 258 l~~ 260 (307)
T PRK05835 258 LRI 260 (307)
T ss_pred HHH
Confidence 853
No 363
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.18 E-value=0.52 Score=44.40 Aligned_cols=134 Identities=19% Similarity=0.155 Sum_probs=86.2
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCccccc---cc----------CCHHHHHHcCcCC--CCCeeEE
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---IT----------IGPLVVDALRPVT--DLPLDVH 121 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---~~----------~G~~~I~~ir~~t--~~~idaH 121 (281)
+.-+.+.|+..|+..+.++.+.+.+.|.|.| ||-=|.-.|. -. +-.++++++|+.+ ++|+-+-
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~I--diN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvK 139 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGV--DLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVK 139 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEE--EEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEE
Confidence 4468999999999999999999999999865 5554542221 12 2234455667654 4788876
Q ss_pred EEe--cChh---hHHHHHHHcCCCEEEEcccccc----c--ccHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHhhc--c
Q 023494 122 LMI--VEPE---QRVPDFIKAGADIVSVHCEQSS----T--IHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD--V 187 (281)
Q Consensus 122 Lmv--~dp~---~~i~~~~~aGAd~Itvh~Ea~~----~--~~i~~~l~~ik~~G~k~Glai~p~-t~ie~~~~~l~--~ 187 (281)
+=+ .+.. ++.+.+.++|+|.+++|..... . .+. +.++.+++.- ++=|..|-+ +..+.+++++. .
T Consensus 140 iR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~-~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g 217 (312)
T PRK10550 140 VRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINW-QAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITG 217 (312)
T ss_pred EECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccH-HHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccC
Confidence 544 2222 3456677899999999976420 0 122 4677777652 333444444 56677888775 4
Q ss_pred CCEEEEE
Q 023494 188 VDLVLIM 194 (281)
Q Consensus 188 vD~Ilvm 194 (281)
+|.|++.
T Consensus 218 ~DgVmiG 224 (312)
T PRK10550 218 CDAVMIG 224 (312)
T ss_pred CCEEEEc
Confidence 8999873
No 364
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=95.15 E-value=0.95 Score=45.75 Aligned_cols=164 Identities=15% Similarity=0.220 Sum_probs=98.9
Q ss_pred HHHHHHHHcCCCeEEEEeeeCccccccc-CCHHHHHHcCcC--CCCCeeEEEEecCh------hhHHHHHHHcCCCEEEE
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNIT-IGPLVVDALRPV--TDLPLDVHLMIVEP------EQRVPDFIKAGADIVSV 144 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~-~G~~~I~~ir~~--t~~~idaHLmv~dp------~~~i~~~~~aGAd~Itv 144 (281)
+..+.|.+.|+|+|++ | | |..+ --.+.++.|++. .+..+.++.-...+ .+-++.+.++|++.|++
T Consensus 27 ~Ia~~L~~~GVd~IE~----G-~-p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v~i 100 (526)
T TIGR00977 27 RIAERLDDLGIHYIEG----G-W-PGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVVTI 100 (526)
T ss_pred HHHHHHHHcCCCEEEE----e-C-CCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEEEE
Confidence 4456677889988887 4 3 3221 112344444331 23455555544433 24578889999999888
Q ss_pred ccccc--------------ccccHHHHHHHHHHcCCcEEEEEC-----CCCCHHHHHHhhcc-----CCEEEEEeecCCC
Q 023494 145 HCEQS--------------STIHLHRTLNQIKDLGAKAGVVLN-----PATSLSAIECVLDV-----VDLVLIMSVNPGF 200 (281)
Q Consensus 145 h~Ea~--------------~~~~i~~~l~~ik~~G~k~Glai~-----p~t~ie~~~~~l~~-----vD~IlvmsV~pG~ 200 (281)
..-+. ..+.+.+.++.+|++|.++..... -.++.+.+.+++.. +|.|.+- -.
T Consensus 101 ~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~----DT 176 (526)
T TIGR00977 101 FGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLC----DT 176 (526)
T ss_pred EeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEe----cC
Confidence 54321 011245668889999998764221 13666666666543 6777653 33
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
-|.....+..+.++.+++.++. ..|++ |-|.-..|.-..+++||+.+
T Consensus 177 vG~~~P~~v~~li~~l~~~~~~----~~i~vH~HND~GlAvANslaAv~AGA~~V 227 (526)
T TIGR00977 177 NGGTLPHEISEITTKVKRSLKQ----PQLGIHAHNDSGTAVANSLLAVEAGATMV 227 (526)
T ss_pred CCCcCHHHHHHHHHHHHHhCCC----CEEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 3444444555667777765431 34666 88888888888999999965
No 365
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=95.12 E-value=0.4 Score=46.14 Aligned_cols=127 Identities=19% Similarity=0.161 Sum_probs=75.7
Q ss_pred HHHcCCCEEEEccccc--------cc----------------ccHHHHHHHHHHc-CC--cEEEEECCCC--------CH
Q 023494 134 FIKAGADIVSVHCEQS--------ST----------------IHLHRTLNQIKDL-GA--KAGVVLNPAT--------SL 178 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~~----------------~~i~~~l~~ik~~-G~--k~Glai~p~t--------~i 178 (281)
+.++|.|+|-+|.-.. +. .-+.++++.+|+. |. .+++=+++.. ..
T Consensus 159 a~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~ 238 (370)
T cd02929 159 ARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESE 238 (370)
T ss_pred HHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCH
Confidence 4678999999996541 00 0155888899885 54 4566566432 23
Q ss_pred HHHH---Hhhc-cCCEEEEEeecCCCCCC--ccchhH--HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-C
Q 023494 179 SAIE---CVLD-VVDLVLIMSVNPGFGGQ--SFIESQ--VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-A 248 (281)
Q Consensus 179 e~~~---~~l~-~vD~IlvmsV~pG~~GQ--~f~~~~--l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-A 248 (281)
++.. +.++ .+|++-+-.......+. .+.+.. ++..+++|+.. +.++.+-|||+ ++.+.++++.| +
T Consensus 239 ~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pvi~~G~i~~~~~~~~~l~~g~~ 313 (370)
T cd02929 239 GEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT-----SKPVVGVGRFTSPDKMVEVVKSGIL 313 (370)
T ss_pred HHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHHHHHHHHHC-----CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 3222 2233 37877552211100011 111211 33344555543 46788889996 88999999987 9
Q ss_pred cEEEEcccccCCCCHHH
Q 023494 249 NALVAGSAVFGAKDYAE 265 (281)
Q Consensus 249 D~~VvGSaIf~a~dp~~ 265 (281)
|.+.+|+++...+|.-+
T Consensus 314 D~V~~gR~~ladP~l~~ 330 (370)
T cd02929 314 DLIGAARPSIADPFLPK 330 (370)
T ss_pred CeeeechHhhhCchHHH
Confidence 99999999998776543
No 366
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=95.09 E-value=1.9 Score=39.60 Aligned_cols=155 Identities=18% Similarity=0.211 Sum_probs=90.7
Q ss_pred eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc--------HHHHHHHHH
Q 023494 91 VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH--------LHRTLNQIK 162 (281)
Q Consensus 91 ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~--------i~~~l~~ik 162 (281)
.-||.+.|+..|+.+...+| .+.+.++|.|+|-+..-+.+..+ -.+.++.+.
T Consensus 6 LRDG~q~~~~~f~~~~~~~i--------------------a~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~ 65 (266)
T cd07944 6 LRDGGYVNNWDFGDEFVKAI--------------------YRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLL 65 (266)
T ss_pred cccCccccCccCCHHHHHHH--------------------HHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHH
Confidence 45888899998888877654 44566788888877643211111 134455554
Q ss_pred Hc---CCcEEEEECCCC-CHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe--EEEecCC
Q 023494 163 DL---GAKAGVVLNPAT-SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW--IEVDGGV 235 (281)
Q Consensus 163 ~~---G~k~Glai~p~t-~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~--I~VDGGI 235 (281)
+. +.++.....+.. ..+.+.+..+. +|.|-+- + ..+.++++.+..+..+++|..+. ++-..+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~-----~-----~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~ 135 (266)
T cd07944 66 GDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVA-----F-----HKHEFDEALPLIKAIKEKGYEVFFNLMAISGY 135 (266)
T ss_pred hhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEe-----c-----ccccHHHHHHHHHHHHHCCCeEEEEEEeecCC
Confidence 43 567777777663 55666665553 7776542 1 12245556666665555554333 2234667
Q ss_pred Chh----cHHHHHHcCCcEEEEc--ccccCCCCHHHHHHHHHHhcC
Q 023494 236 GPK----NAYKVIEAGANALVAG--SAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 236 ~~e----~i~~~~~aGAD~~VvG--SaIf~a~dp~~~~~~l~~~~~ 275 (281)
+++ .++.+.++|+|.+.+. ..+...++..+.++.+++.+.
T Consensus 136 ~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 181 (266)
T cd07944 136 SDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLD 181 (266)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC
Confidence 765 4456678899988776 224444445556666665543
No 367
>PRK15447 putative protease; Provisional
Probab=95.09 E-value=0.43 Score=44.64 Aligned_cols=113 Identities=9% Similarity=-0.025 Sum_probs=75.1
Q ss_pred ChhhHHHHHHHcCCCEEEEcccc------cccccHHHHHHHHHHcCCcEEEEECCCC----CHHHHHHhhcc-CCEEEEE
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQ------SSTIHLHRTLNQIKDLGAKAGVVLNPAT----SLSAIECVLDV-VDLVLIM 194 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea------~~~~~i~~~l~~ik~~G~k~Glai~p~t----~ie~~~~~l~~-vD~Ilvm 194 (281)
+...+...+.+.|||.|.+..+. .+.+++.+.++.++++|+++.++++.=. ..+.+.++++. +|.|++
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v- 94 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA- 94 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE-
Confidence 34456777778899999998543 2356799999999999999999875431 23345555443 344433
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC---hhcHHHHHHcCCcEEEEccccc
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG---PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~---~e~i~~~~~aGAD~~VvGSaIf 258 (281)
-+ +.-+..+++. +.++.+|-.+| ...+..+.+.|++-+++..-+-
T Consensus 95 -~d------------~g~l~~~~e~------~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 95 -ND------------LGAVRLLAER------GLPFVAGPALNCYNAATLALLARLGATRWCMPVELS 142 (301)
T ss_pred -eC------------HHHHHHHHhc------CCCEEEecccccCCHHHHHHHHHcCCcEEEECCcCC
Confidence 11 2223333331 35788899987 4466678899999999886665
No 368
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=95.07 E-value=0.17 Score=48.78 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=66.9
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCc-cchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~-f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
+.++++++. ++.+. +..-...+..+...+ .+|.|.| +.|.|. |. -.+..++-|.++++... .+++|.+|
T Consensus 218 ~~i~~l~~~~~~Pvi--vKGv~~~eda~~a~~~Gvd~I~V-S~HGGr--q~~~~~a~~~~L~ei~~av~---~~i~vi~d 289 (367)
T TIGR02708 218 RDIEEIAGYSGLPVY--VKGPQCPEDADRALKAGASGIWV-TNHGGR--QLDGGPAAFDSLQEVAEAVD---KRVPIVFD 289 (367)
T ss_pred HHHHHHHHhcCCCEE--EeCCCCHHHHHHHHHcCcCEEEE-CCcCcc--CCCCCCcHHHHHHHHHHHhC---CCCcEEee
Confidence 346666664 44433 332233555555555 4898865 566542 22 22445666666665542 24789999
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEcccccC------CCCHHHHHHHHHHh
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVFG------AKDYAEAIKGIKTS 273 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf~------a~dp~~~~~~l~~~ 273 (281)
|||. ..++.+.+..|||.+-+|+.+.. .+-....++.|++.
T Consensus 290 GGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~E 337 (367)
T TIGR02708 290 SGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKE 337 (367)
T ss_pred CCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999 66777888899999999988432 12334455555543
No 369
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=95.07 E-value=1.4 Score=42.56 Aligned_cols=201 Identities=22% Similarity=0.255 Sum_probs=112.9
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEE--eeeCccccc---ccCCHHHHHHcCcCCCC--CeeEEEEecChhh---
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVD--VMDGRFVPN---ITIGPLVVDALRPVTDL--PLDVHLMIVEPEQ--- 129 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiD--ImDG~fvpn---~~~G~~~I~~ir~~t~~--~idaHLmv~dp~~--- 129 (281)
|=| . -+|...+.+.+..+..+|+|.|--| .-|..|.|- +....+.+++..+.|+. ++-+.+- .++.+
T Consensus 133 iKP-~-GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nit-a~~~em~~ 209 (364)
T cd08210 133 LKP-Q-GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVT-GPPTQLLE 209 (364)
T ss_pred ecc-c-cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecC-CCHHHHHH
Confidence 557 3 7899999999999999999998665 344555552 12334444444443443 3333221 33333
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----------CCCCCHHH---HHHhhc--cCCEEEEE
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----------NPATSLSA---IECVLD--VVDLVLIM 194 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----------~p~t~ie~---~~~~l~--~vD~Ilvm 194 (281)
..+.+.++|++.+-+-.-.. -. ..++.+++....+-+.. +|.. ++. +.++.. .+|.+++
T Consensus 210 ra~~a~~~Ga~~vMv~~~~~---G~-~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~-is~~~~~~kl~RlaGad~~~~- 283 (364)
T cd08210 210 RARFAKEAGAGGVLIAPGLT---GL-DTFRELAEDFDFLPILAHPAFAGAFVSSGDG-ISHALLFGTLFRLAGADAVIF- 283 (364)
T ss_pred HHHHHHHcCCCEEEeecccc---hH-HHHHHHHhcCCCcEEEEccccccccccCCCc-ccHHHHHHHHHHHhCCCEEEe-
Confidence 35556789999988876531 11 23444444322122222 2333 332 555544 3787754
Q ss_pred eecCCCCC-CccchhHHHHHHHH-HHHhhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEE-cccccCCCC-HHHHHHH
Q 023494 195 SVNPGFGG-QSFIESQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVA-GSAVFGAKD-YAEAIKG 269 (281)
Q Consensus 195 sV~pG~~G-Q~f~~~~l~kI~~l-r~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~Vv-GSaIf~a~d-p~~~~~~ 269 (281)
|+..| -.+.++.+.++.+. ++-...-...+++ ..||+++..++.+++. |.|+++. |..|+..+| +++-++.
T Consensus 284 ---~~~~g~~~~~~e~~~~ia~~~~~~~~~iK~~~Pv-~sgG~~~~~v~~l~~~~G~Dvil~aGGgi~gHp~g~~ag~~a 359 (364)
T cd08210 284 ---PNYGGRFGFSREECQAIADACRRPMGGLKPILPA-PGGGMSVERAPEMVELYGPDVMLLIGGSLLRAGDDLTENTRA 359 (364)
T ss_pred ---CCCcCCccCCHHHHHHHHHHhcCCccccCCCcCc-CCCCcCHHHHHHHHHHcCCcEEEEccccccCCCCChHHHHHH
Confidence 33333 33455555555432 1111000011222 4889999999977655 8886654 577999865 8888888
Q ss_pred HHHh
Q 023494 270 IKTS 273 (281)
Q Consensus 270 l~~~ 273 (281)
+++.
T Consensus 360 ~rqa 363 (364)
T cd08210 360 FVEA 363 (364)
T ss_pred HHhh
Confidence 8764
No 370
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=95.07 E-value=0.22 Score=50.68 Aligned_cols=121 Identities=10% Similarity=0.099 Sum_probs=89.6
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHH-------------cCCcEEEEECCCCCHHHHHHhhccCCEEEEEeec---
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKD-------------LGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVN--- 197 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~-------------~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~--- 197 (281)
+.+.|+..|.|+.-. +.+++.++.+.++. ....+|+.+....-+..+.+++..+|++.+.+-+
T Consensus 379 a~~~G~~~Im~PmV~-t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~vDf~sIGtnDLsq 457 (565)
T TIGR01417 379 ASAYGKLRIMFPMVA-TVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEVDFFSIGTNDLTQ 457 (565)
T ss_pred HHhcCCCeEEecCCC-CHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhhCCEEEEChhHHHH
Confidence 456799999999765 35566666665553 2467888887666667888888899999885432
Q ss_pred -----------CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec--CCChhcHHHHHHcCCcEEEEcccc
Q 023494 198 -----------PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG--GVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 198 -----------pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG--GI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
.|.-+|.+.|.++.-|+++.+...++ +.++.+=| .-+++-++.++..|++.+.++..-
T Consensus 458 y~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~--g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~~~ 528 (565)
T TIGR01417 458 YTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAE--GIWVGMCGEMAGDERAIPLLLGLGLRELSMSASS 528 (565)
T ss_pred HHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHc--CCeEEEeCCcCCCHHHHHHHHHCCCCEEEEChHh
Confidence 34457889999999999888877665 45676644 346889999999999999999553
No 371
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.99 E-value=0.21 Score=46.52 Aligned_cols=181 Identities=19% Similarity=0.195 Sum_probs=103.9
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEE---------EeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe--c
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHV---------DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--V 125 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHi---------DImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv--~ 125 (281)
...+.|..+ +-.. -+.++++|.+.+.+ ..-|+.+++ ++.-...++.|...+++|+.+|.=. -
T Consensus 13 ~~l~~p~~~-----Da~S-Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt-~~e~~~~~~~I~~~~~iPviaD~d~GyG 85 (285)
T TIGR02317 13 DILQIPGAI-----NAMA-ALLAERAGFEAIYLSGAAVAASLGLPDLGITT-LDEVAEDARRITRVTDLPLLVDADTGFG 85 (285)
T ss_pred CcEEeCCCC-----CHHH-HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCC-HHHHHHHHHHHHhccCCCEEEECCCCCC
Confidence 455666555 2222 23555667776544 234533332 3344556777777788999998877 3
Q ss_pred Chhh---HHHHHHHcCCCEEEEcccc-------------cccccHHHHHHHHHHcCCcEEEEECCCCC----------HH
Q 023494 126 EPEQ---RVPDFIKAGADIVSVHCEQ-------------SSTIHLHRTLNQIKDLGAKAGVVLNPATS----------LS 179 (281)
Q Consensus 126 dp~~---~i~~~~~aGAd~Itvh~Ea-------------~~~~~i~~~l~~ik~~G~k~Glai~p~t~----------ie 179 (281)
+|.+ .++.+.++|+..|++-.-. .+.++..+-|+.+++.-...-+.|+--|+ ++
T Consensus 86 ~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~ 165 (285)
T TIGR02317 86 EAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIE 165 (285)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHH
Confidence 4543 4888999999888774211 01223334444555432222233333332 34
Q ss_pred HHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE---EEecCCCh-hcHHHHHHcCCcEEEEc
Q 023494 180 AIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI---EVDGGVGP-KNAYKVIEAGANALVAG 254 (281)
Q Consensus 180 ~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I---~VDGGI~~-e~i~~~~~aGAD~~VvG 254 (281)
+.+.|.+ .+|.|.+ ||. ...+.++++.+.++ .++ .+.||-++ -++.++.+.|++.++.|
T Consensus 166 Ra~ay~~AGAD~vfi----~g~-------~~~e~i~~~~~~i~-----~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~ 229 (285)
T TIGR02317 166 RAKAYVEAGADMIFP----EAL-------TSLEEFRQFAKAVK-----VPLLANMTEFGKTPLFTADELREAGYKMVIYP 229 (285)
T ss_pred HHHHHHHcCCCEEEe----CCC-------CCHHHHHHHHHhcC-----CCEEEEeccCCCCCCCCHHHHHHcCCcEEEEc
Confidence 5555555 4898876 342 23444555555443 233 24566654 37899999999999999
Q ss_pred ccccCC
Q 023494 255 SAVFGA 260 (281)
Q Consensus 255 SaIf~a 260 (281)
...+.+
T Consensus 230 ~~~~~a 235 (285)
T TIGR02317 230 VTAFRA 235 (285)
T ss_pred hHHHHH
Confidence 887753
No 372
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=94.98 E-value=0.18 Score=48.97 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=64.1
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
+.++++++. +..+.+ ..-...+..+...+ .+|.|.+ +-+-| .....-+.+++-|.++++.+.. +++|.+||
T Consensus 243 ~~i~~lr~~~~~pviv--KgV~~~~dA~~a~~~G~d~I~v-snhGG-r~~d~~~~t~~~L~ei~~~~~~---~~~vi~dG 315 (383)
T cd03332 243 EDLAFLREWTDLPIVL--KGILHPDDARRAVEAGVDGVVV-SNHGG-RQVDGSIAALDALPEIVEAVGD---RLTVLFDS 315 (383)
T ss_pred HHHHHHHHhcCCCEEE--ecCCCHHHHHHHHHCCCCEEEE-cCCCC-cCCCCCcCHHHHHHHHHHHhcC---CCeEEEeC
Confidence 456667764 555444 22245666666655 4999876 33323 2222345567777777776542 47899999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
||. -.++-+.+..|||.+-+|+.+.
T Consensus 316 GIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 316 GVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 999 5578888999999999998865
No 373
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=94.97 E-value=0.58 Score=42.67 Aligned_cols=122 Identities=14% Similarity=0.177 Sum_probs=82.7
Q ss_pred CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEe--eeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecC---
Q 023494 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDV--MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVE--- 126 (281)
Q Consensus 53 ~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDI--mDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~d--- 126 (281)
+-.+..+|+.+|...+..++.++++.+.+.|+|.+++.+ .+. .++...-.+.+..+++. .+.|+.+++-..+
T Consensus 11 ~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG 88 (253)
T PRK02412 11 IGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEK--ISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGG 88 (253)
T ss_pred eCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCC
Confidence 445567899999988888888888888878899988752 222 11122223455566653 4679998887653
Q ss_pred -----hhhH---HHHHHHcC-CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECC--CCC
Q 023494 127 -----PEQR---VPDFIKAG-ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP--ATS 177 (281)
Q Consensus 127 -----p~~~---i~~~~~aG-Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p--~t~ 177 (281)
...| ++.+.+.| +|+|-+-... +.+...++++.+++.|.++-+..+. .||
T Consensus 89 ~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~-~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP 149 (253)
T PRK02412 89 EIALSDEEYLALIKAVIKSGLPDYIDVELFS-GKDVVKEMVAFAHEHGVKVVLSYHDFEKTP 149 (253)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEEeccC-ChHHHHHHHHHHHHcCCEEEEeeCCCCCCc
Confidence 1223 44567778 8999987654 2345677888889999999988763 455
No 374
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=94.97 E-value=1.7 Score=42.29 Aligned_cols=189 Identities=22% Similarity=0.280 Sum_probs=97.5
Q ss_pred ceEeEEE-eccCccCHHHHHHHH---HHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCee----------E--E
Q 023494 58 IIVSPSI-LSANFAKLGEQVKAV---ELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD----------V--H 121 (281)
Q Consensus 58 ~~i~pSi-la~D~~~l~~~l~~l---~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~id----------a--H 121 (281)
.++.+.| -+.|..+++.+++.+ ++.|+|. |||-..-.++ ..+-+.|-+.++.|+- + .
T Consensus 61 tKVNaNIGtS~~~~d~~~E~~K~~~A~~~GADt----iMDLStGgdl---~~iR~~il~~s~vpvGTVPiYqa~~~~~~~ 133 (423)
T TIGR00190 61 TKVNANIGTSADTSDIEEEVEKALIAIKYGADT----VMDLSTGGDL---DEIRKAILDAVPVPVGTVPIYQAAEKVHGA 133 (423)
T ss_pred eEEEeeecCCCCCCCHHHHHHHHHHHHHcCCCe----EeeccCCCCH---HHHHHHHHHcCCCCccCccHHHHHHHhcCC
Confidence 4677777 566778888777665 5889986 4663221221 0111222122222221 0 0
Q ss_pred EEecChhh---HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE-------------CCCCCH-HHHHHh
Q 023494 122 LMIVEPEQ---RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-------------NPATSL-SAIECV 184 (281)
Q Consensus 122 Lmv~dp~~---~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-------------~p~t~i-e~~~~~ 184 (281)
+.=.++.. .++.-++-|.|++|+|+-- ..+.++.+++.|...|++= +-+.|+ +.+.++
T Consensus 134 ~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi-----~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~l 208 (423)
T TIGR00190 134 VEDMDEDDMFRAIEKQAKDGVDFMTIHAGV-----LLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYI 208 (423)
T ss_pred hhhCCHHHHHHHHHHHHHhCCCEEEEccch-----hHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHH
Confidence 11123333 3555577899999999863 3567888888887777651 233455 333333
Q ss_pred h---ccCCEEEEEe--ecCCCCCCccchhHHH---HHHHHHHHhhhcCCCCeEEEecCCChhcHH------HHHHcCCcE
Q 023494 185 L---DVVDLVLIMS--VNPGFGGQSFIESQVK---KISDLRRMCLEKGVNPWIEVDGGVGPKNAY------KVIEAGANA 250 (281)
Q Consensus 185 l---~~vD~Ilvms--V~pG~~GQ~f~~~~l~---kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~------~~~~aGAD~ 250 (281)
+ ..-|+.+=++ ..||.--..-....+. .+-+|.+...++|.++-|+==|-+-.+.|. +-+-.||=.
T Consensus 209 LeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVEGPGHvPl~~I~~nv~lqK~lc~~APf 288 (423)
T TIGR00190 209 LEIAKEYDVTLSLGDGLRPGCIADATDRAQISELITLGELVERAREADVQCMVEGPGHVPLDQIEANVRLQKELCDEAPF 288 (423)
T ss_pred HHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHHhhCCCCe
Confidence 3 3456655432 3576532222222222 233444444445544444444555555433 112347888
Q ss_pred EEEccccc
Q 023494 251 LVAGSAVF 258 (281)
Q Consensus 251 ~VvGSaIf 258 (281)
+|+|--.+
T Consensus 289 YvLGPLvT 296 (423)
T TIGR00190 289 YVLGPLVT 296 (423)
T ss_pred eecCCccc
Confidence 88885544
No 375
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.95 E-value=0.24 Score=48.92 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeE-EEEecChhhHHHHHHHcCCCEEEEcccc---
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDV-HLMIVEPEQRVPDFIKAGADIVSVHCEQ--- 148 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~ida-HLmv~dp~~~i~~~~~aGAd~Itvh~Ea--- 148 (281)
+.++.+.++|+|.|++|..+|+-. .-.+.|++||+. ++.++.+ .. .+++ -...+.++|||.|-+..-.
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~~----~~~~~i~~i~~~~~~~~vi~G~v--~t~~-~a~~l~~aGad~i~vg~g~G~~ 299 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHSI----YVIDSIKEIKKTYPDLDIIAGNV--ATAE-QAKALIDAGADGLRVGIGPGSI 299 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcHh----HHHHHHHHHHHhCCCCCEEEEeC--CCHH-HHHHHHHhCCCEEEECCCCCcC
Confidence 446678889999999999998531 345678888875 5555554 22 2222 4567889999999654210
Q ss_pred -cc-------ccc---HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC
Q 023494 149 -SS-------TIH---LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 200 (281)
Q Consensus 149 -~~-------~~~---i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~ 200 (281)
.. .+. +.++.+.+++.|+.+...=.-.|+.+..+.+.-.+|.|++.+...|.
T Consensus 300 ~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~ 362 (450)
T TIGR01302 300 CTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGT 362 (450)
T ss_pred CccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence 00 011 23445556666655433222346777677777779999887665443
No 376
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.95 E-value=0.37 Score=47.07 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=55.0
Q ss_pred CcEEEEECCCC-CHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHH
Q 023494 166 AKAGVVLNPAT-SLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV 243 (281)
Q Consensus 166 ~k~Glai~p~t-~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~ 243 (281)
..+|.++.+.. ..++...+++ .+|+|.+=+.+ |. .....+.++++|+.++ +.++.+.+-.+.+.+..+
T Consensus 142 l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~----g~--~~~~~~~v~~ik~~~p----~~~vi~g~V~T~e~a~~l 211 (404)
T PRK06843 142 LRVGAAVSIDIDTIERVEELVKAHVDILVIDSAH----GH--STRIIELVKKIKTKYP----NLDLIAGNIVTKEAALDL 211 (404)
T ss_pred eEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCC----CC--ChhHHHHHHHHHhhCC----CCcEEEEecCCHHHHHHH
Confidence 56788887642 2466777766 49999874444 21 2345566777777654 345655666679999999
Q ss_pred HHcCCcEEEEc
Q 023494 244 IEAGANALVAG 254 (281)
Q Consensus 244 ~~aGAD~~VvG 254 (281)
.++|||.+.+|
T Consensus 212 ~~aGaD~I~vG 222 (404)
T PRK06843 212 ISVGADCLKVG 222 (404)
T ss_pred HHcCCCEEEEC
Confidence 99999999988
No 377
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=94.92 E-value=0.18 Score=53.22 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=86.4
Q ss_pred HcCCCE--EEEcccccccccHHHHHHHHHHcC-------CcEEEEECCCCCHHHHHHhhccCCEEEEEeecC--------
Q 023494 136 KAGADI--VSVHCEQSSTIHLHRTLNQIKDLG-------AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP-------- 198 (281)
Q Consensus 136 ~aGAd~--Itvh~Ea~~~~~i~~~l~~ik~~G-------~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~p-------- 198 (281)
+.|+.. |.|+.-. +.+++.++.+.++..| ..+|+.+....-+..+++++..+|++.+.+-+-
T Consensus 625 d~G~~~~~Im~PmV~-s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGtnDLtq~~lg~d 703 (782)
T TIGR01418 625 EMGLTNVEVMIPFVR-TPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGSNDLTQLTLGVD 703 (782)
T ss_pred hcCCCCeEEEecCCC-CHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECchHHHHHHhCcc
Confidence 668877 6666544 3566777777777654 457778865556678888888899998754322
Q ss_pred ------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC---CChhcHHHHHHcCCcEEEEccc
Q 023494 199 ------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG---VGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 199 ------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG---I~~e~i~~~~~aGAD~~VvGSa 256 (281)
|.-++...|.+++-|+++.+-.+++| .++.+-|. .+++.++.+++.|++.+.+++.
T Consensus 704 R~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g--~~vgicge~~~~~p~~~~~l~~~G~~~ls~~~d 768 (782)
T TIGR01418 704 RDSGLVAHLFDERNPAVLRLIEMAIKAAKEHG--KKVGICGQAPSDYPEVVEFLVEEGIDSISLNPD 768 (782)
T ss_pred CCchhhcccCCCCCHHHHHHHHHHHHHHHhcC--CeEEEeCCCCCCCHHHHHHHHHcCCCEEEECcc
Confidence 12356778999999999888877654 56777663 2689999999999999999954
No 378
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=94.91 E-value=1 Score=41.95 Aligned_cols=183 Identities=13% Similarity=0.172 Sum_probs=113.2
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
.|+..+.-.++.+++.+...| +-+-.++ |.+ +.+-..+++.+.+..+.|+-+||==.....++..++++|.+.|-+
T Consensus 26 ~n~e~~~avi~AAee~~sPvI-iq~~~~~~~~~g-~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~ 103 (284)
T PRK09195 26 HNLETMQVVVETAAELHSPVI-IAGTPGTFSYAG-TEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRSVMI 103 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EEcChhHHhhCC-HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 344455566777777777765 4444442 221 111122344444446789999985544455788999999887766
Q ss_pred ccccccc----ccHHHHHHHHHHcCCcE----EEE--------EC----CCCCHHHHHHhhc--cCCEEEE--EeecCCC
Q 023494 145 HCEQSST----IHLHRTLNQIKDLGAKA----GVV--------LN----PATSLSAIECVLD--VVDLVLI--MSVNPGF 200 (281)
Q Consensus 145 h~Ea~~~----~~i~~~l~~ik~~G~k~----Gla--------i~----p~t~ie~~~~~l~--~vD~Ilv--msV~pG~ 200 (281)
=.-..+. ..-.++.+.++..|+-+ |-. .. .-|..+..+++.. .+|.+.+ .++|--+
T Consensus 104 DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y 183 (284)
T PRK09195 104 DGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMY 183 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCcccccc
Confidence 5433221 12457778888888654 221 01 1367777888876 4887654 3444222
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEccccc
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
.+.+ .-.+++|+++++.+ ++++..=|| +..+.++++++.|+.-+=+++.+.
T Consensus 184 ~~~p--~Ld~~~L~~I~~~~-----~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 236 (284)
T PRK09195 184 KGEP--KLDFDRLENIRQWV-----NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELK 236 (284)
T ss_pred CCCC--cCCHHHHHHHHHHh-----CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 2311 12266777777664 367877775 557899999999999999999886
No 379
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=94.81 E-value=0.25 Score=47.52 Aligned_cols=108 Identities=20% Similarity=0.303 Sum_probs=68.2
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccc--hhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFI--ESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~--~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
+.++++++. +..+.+ .--...+..+...+ .+|.|.+ + + .+|..+. +..++-+.++++.. +.+|.+
T Consensus 226 ~~i~~ir~~~~~pvii--KgV~~~eda~~a~~~G~d~I~V-S-n--hGGrqld~~~~~~~~L~ei~~~~-----~~~vi~ 294 (361)
T cd04736 226 QDLRWLRDLWPHKLLV--KGIVTAEDAKRCIELGADGVIL-S-N--HGGRQLDDAIAPIEALAEIVAAT-----YKPVLI 294 (361)
T ss_pred HHHHHHHHhCCCCEEE--ecCCCHHHHHHHHHCCcCEEEE-C-C--CCcCCCcCCccHHHHHHHHHHHh-----CCeEEE
Confidence 367777764 333222 22245666666665 4899876 2 2 2333333 44566677766543 268899
Q ss_pred ecCCC-hhcHHHHHHcCCcEEEEcccccC------CCCHHHHHHHHHHhc
Q 023494 232 DGGVG-PKNAYKVIEAGANALVAGSAVFG------AKDYAEAIKGIKTSK 274 (281)
Q Consensus 232 DGGI~-~e~i~~~~~aGAD~~VvGSaIf~------a~dp~~~~~~l~~~~ 274 (281)
||||. ...+-+.+..|||.+.+|+.+.. .+-....++.|++.+
T Consensus 295 dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~el 344 (361)
T cd04736 295 DSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEI 344 (361)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999 56888899999999999998762 123445555555543
No 380
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.81 E-value=0.34 Score=45.96 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=74.2
Q ss_pred CCeeEEEEecChh-hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCC-CHHHHHHhhcc---CCE
Q 023494 116 LPLDVHLMIVEPE-QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT-SLSAIECVLDV---VDL 190 (281)
Q Consensus 116 ~~idaHLmv~dp~-~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t-~ie~~~~~l~~---vD~ 190 (281)
.||.+-=|..... +....+.+.|.-.+..- - +.++..+.++..+..++.+++++.... ..+++.++.+. +|+
T Consensus 35 ~P~~inAM~t~in~~LA~~a~~~G~~~i~hK-~--~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~ 111 (321)
T TIGR01306 35 LPVVPANMQTIIDEKLAEQLAENGYFYIMHR-F--DEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEY 111 (321)
T ss_pred CcEEeeccchhhhHHHHHHHHHcCCEEEEec-C--CHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCE
Confidence 4444444533222 23445566664433332 1 234455556666555666666664332 23566666653 588
Q ss_pred EEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 191 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 191 IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
|.+=+.| | .....++.|+++|+..+ .+..+.|+|. .+.++.+.++|||.+.+|
T Consensus 112 i~~D~ah----g--~s~~~~~~i~~i~~~~p-----~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 112 ITIDIAH----G--HSNSVINMIKHIKTHLP-----DSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred EEEeCcc----C--chHHHHHHHHHHHHhCC-----CCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 7653222 2 33467888888888753 2455777676 889999999999999888
No 381
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=94.80 E-value=0.35 Score=47.32 Aligned_cols=94 Identities=18% Similarity=0.276 Sum_probs=61.2
Q ss_pred ceeeccccCCCCCccccccccchhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc
Q 023494 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (281)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp 98 (281)
++--.+-.+..|+ |..-+.|++....|-.+.++=.......+|-|- +|...+.+..+.+.+.|++.+.+|++
T Consensus 174 D~IKDDE~l~~q~-~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~------ 245 (406)
T cd08207 174 DFIKDDELLANPP-YSPLDERVRAVMRVINDHAQRTGRKVMYAFNIT-DDIDEMRRNHDLVVEAGGTCVMVSLN------ 245 (406)
T ss_pred CcccccccCCCCC-CCcHHHHHHHHHHHHHHHHHhhCCcceEEEecC-CCHHHHHHHHHHHHHhCCCeEEEecc------
Confidence 3444444443333 333344455555554444443444456677776 56888888888899999999888743
Q ss_pred cccCCHHHHHHcCcCCCCCeeEEE
Q 023494 99 NITIGPLVVDALRPVTDLPLDVHL 122 (281)
Q Consensus 99 n~~~G~~~I~~ir~~t~~~idaHL 122 (281)
..|...++.+|+.++.++.+|=
T Consensus 246 --~~G~~~l~~l~~~~~l~IhaHr 267 (406)
T cd08207 246 --SVGLSGLAALRRHSQLPIHGHR 267 (406)
T ss_pred --ccchHHHHHHHhcCCceEEECC
Confidence 4577889999888888888773
No 382
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=94.79 E-value=1.1 Score=41.76 Aligned_cols=166 Identities=23% Similarity=0.201 Sum_probs=99.4
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCH-HHHHHcCcC-C---CCCeeEEEEecChhhHHHHHHHc--CCC--EEEE
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGP-LVVDALRPV-T---DLPLDVHLMIVEPEQRVPDFIKA--GAD--IVSV 144 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~-~~I~~ir~~-t---~~~idaHLmv~dp~~~i~~~~~a--GAd--~Itv 144 (281)
+.++.|.+.|++.|++ | | |..+-.. +.++.|.+. . +..+-+ .+-+....++.+.++ |++ .|++
T Consensus 27 ~ia~~L~~~Gv~~IE~----g-f-P~~~~~e~e~~~~i~~~~~~~~~~~~~a--l~r~~~~die~a~~~~~~~~~~~v~i 98 (284)
T cd07942 27 RFFKLLVKIGFKEIEV----G-F-PSASQTDFDFVRELIEEDLIPDDVTIQV--LTQAREDLIERTFEALRGAKKAIVHL 98 (284)
T ss_pred HHHHHHHHcCCCEEEE----e-C-CCCCHHHHHHHHHHHHccCCCCCCEEEE--EcCCChhhHHHHHHHhCCCCCCEEEE
Confidence 4556778899998888 4 5 7666555 778887332 1 222222 223333347777776 666 4544
Q ss_pred ccccc--------------ccccHHHHHHHHHHcCCc-----EEEEECC----CCCHHHHHHhhccC--------C---E
Q 023494 145 HCEQS--------------STIHLHRTLNQIKDLGAK-----AGVVLNP----ATSLSAIECVLDVV--------D---L 190 (281)
Q Consensus 145 h~Ea~--------------~~~~i~~~l~~ik~~G~k-----~Glai~p----~t~ie~~~~~l~~v--------D---~ 190 (281)
-.-++ ..+.+.+.++.+|++|++ .++-+.+ .++.+.+.++...+ | .
T Consensus 99 ~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~ 178 (284)
T cd07942 99 YNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDVWQPTPENKII 178 (284)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceE
Confidence 42211 011245566778888864 4667777 57777777765432 2 2
Q ss_pred EEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 191 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 191 IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
|. -|-.-|.....++.+.++.+++.++.. .+.++++ |-|....|.-..+++|++.|=
T Consensus 179 i~----laDTvG~a~P~~v~~~~~~l~~~~~~~-~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id 239 (284)
T cd07942 179 LN----LPATVEVATPNVYADQIEWFCRNLSRR-ESVIISLHPHNDRGTGVAAAELALLAGADRVE 239 (284)
T ss_pred EE----ccccccccCHHHHHHHHHHHHHhcCCC-CCceEEEEecCCCchHHHHHHHHHHhCCCEEE
Confidence 32 234445544455667777777765421 1244665 778888898889999999865
No 383
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=94.76 E-value=0.48 Score=44.76 Aligned_cols=186 Identities=13% Similarity=0.117 Sum_probs=96.9
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC--CHHHHHHcCcCCCCCeeEEEEe---------cC---hhhHHH
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI--GPLVVDALRPVTDLPLDVHLMI---------VE---PEQRVP 132 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~--G~~~I~~ir~~t~~~idaHLmv---------~d---p~~~i~ 132 (281)
.++..+.+.++.+.+.|++.+++ ..|. -|...+ -.++++.||+.. ..+.+|-++ .+ ..+.++
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l--~gG~-~p~~~~~~~~~li~~Ik~~~-~~i~~~~~s~~ei~~~~~~~g~~~~e~l~ 147 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILL--QGGV-NPDLGLDYYEDLFRAIKARF-PHIHIHSFSPVEIVYIAKKEGLSLREVLE 147 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEE--ecCC-CCCCCHHHHHHHHHHHHHHC-CCcCCCCCCHHHHHHHhccCCCCHHHHHH
Confidence 34456666677777889998877 4543 343322 235677777642 112222211 01 134567
Q ss_pred HHHHcCCCEEEE-ccccc-------------ccccHHHHHHHHHHcCCcEE--EEECCCCCHHHHHHhhc---c--CCEE
Q 023494 133 DFIKAGADIVSV-HCEQS-------------STIHLHRTLNQIKDLGAKAG--VVLNPATSLSAIECVLD---V--VDLV 191 (281)
Q Consensus 133 ~~~~aGAd~Itv-h~Ea~-------------~~~~i~~~l~~ik~~G~k~G--lai~p~t~ie~~~~~l~---~--vD~I 191 (281)
.+.++|.+.+.. ..|.. +.++..++++.+++.|+++. +.+.+....+...+.+. . ++.+
T Consensus 148 ~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~ 227 (340)
T TIGR03699 148 RLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRELQDKTG 227 (340)
T ss_pred HHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHhchhhC
Confidence 889999998762 22321 12235678888899998764 55665554443333322 1 3332
Q ss_pred EEE---ee--cC-CCC--CCcc--chhHHHHHHHHHHHhhhcCCCCeEEEecCC---ChhcHHHHHHcCCcE----EEEc
Q 023494 192 LIM---SV--NP-GFG--GQSF--IESQVKKISDLRRMCLEKGVNPWIEVDGGV---GPKNAYKVIEAGANA----LVAG 254 (281)
Q Consensus 192 lvm---sV--~p-G~~--GQ~f--~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI---~~e~i~~~~~aGAD~----~VvG 254 (281)
.++ .. .| |.. ..+. ..+.++.|.-.|-+++. .+-+.||- ..+....+..+|||. ++.|
T Consensus 228 ~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~-----~~~i~~~~~~~g~~~~~~~l~~Gan~~~g~~~~~ 302 (340)
T TIGR03699 228 GFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDN-----IPNIQASWVTQGKEVGQLALHFGANDFGSTMLEE 302 (340)
T ss_pred CeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCC-----CCcccCCccccChHHHHHHHhcCCccCCCccccc
Confidence 222 11 12 321 1111 13345555555555542 22345553 234456789999997 5556
Q ss_pred ccccCCC
Q 023494 255 SAVFGAK 261 (281)
Q Consensus 255 SaIf~a~ 261 (281)
..+..+.
T Consensus 303 ~~~~~~g 309 (340)
T TIGR03699 303 NVVAAAG 309 (340)
T ss_pred cccccCC
Confidence 6665443
No 384
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.74 E-value=0.5 Score=45.09 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=68.9
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHH-HcCCcEEEEECCC-CCHHHHHHhhc---cCCEEEEEeecCCCCCCc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK-DLGAKAGVVLNPA-TSLSAIECVLD---VVDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik-~~G~k~Glai~p~-t~ie~~~~~l~---~vD~IlvmsV~pG~~GQ~ 204 (281)
....+.+.|. .-.+|=.. +.++..+.++..+ +.+..+-+++... ...+++..+++ .+|+|.+=+.| |
T Consensus 62 mA~~la~~g~-~~~iHk~~-~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~Ah-G----- 133 (346)
T PRK05096 62 MAKALASFDI-LTAVHKHY-SVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICIDVAN-G----- 133 (346)
T ss_pred HHHHHHHCCC-eEEEecCC-CHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC-C-----
Confidence 4445566653 33344322 2333444444444 2234555555433 34577777776 48998764333 2
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
.....++.|+++|+.+++ ..| +.|.|- .+....++++|||++-||
T Consensus 134 hs~~~i~~ik~ik~~~P~----~~v-IaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 134 YSEHFVQFVAKAREAWPD----KTI-CAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred cHHHHHHHHHHHHHhCCC----CcE-EEecccCHHHHHHHHHcCCCEEEEc
Confidence 345678888888887653 444 677775 889999999999999877
No 385
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.69 E-value=0.47 Score=45.25 Aligned_cols=112 Identities=16% Similarity=0.210 Sum_probs=67.2
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHH-HcCCcEEEEECCC-CCHHHHHHhhcc---CCEEEEEeecCCCCCCc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK-DLGAKAGVVLNPA-TSLSAIECVLDV---VDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik-~~G~k~Glai~p~-t~ie~~~~~l~~---vD~IlvmsV~pG~~GQ~ 204 (281)
....+.+.|. .-.+|=.. +.++..+.++..+ +.+..+-+++... ...++++.+++. +|+|.+=+.| |
T Consensus 61 mA~~la~~g~-~~~iHk~~-~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~Ah-G----- 132 (343)
T TIGR01305 61 MAAALSQHSI-FTAIHKHY-SVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVAN-G----- 132 (343)
T ss_pred HHHHHHHCCC-eEEEeeCC-CHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCC-C-----
Confidence 4445566652 33344322 1333334443322 2344555555433 245777777765 7998764333 2
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEc
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvG 254 (281)
.....++.|+++|+..+. ...+.|.| +++.+..++++|||.+.||
T Consensus 133 hs~~~i~~ik~ir~~~p~-----~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 133 YSEHFVEFVKLVREAFPE-----HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred cHHHHHHHHHHHHhhCCC-----CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 334678888888887653 24466745 5999999999999999988
No 386
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=94.69 E-value=2.4 Score=38.65 Aligned_cols=100 Identities=21% Similarity=0.183 Sum_probs=58.0
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc---------cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI---------TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~---------~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.|.....+..+.+.+.|+|+| ||==+..-|+- .-=..+++.+++.++.|+- +-+.+|. .++.+.++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiI--DvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piS--IDT~~~~-v~~aaL~~ 95 (258)
T cd00423 21 LSLDKALEHARRMVEEGADII--DIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPIS--VDTFNAE-VAEAALKA 95 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEE--EECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEE--EeCCcHH-HHHHHHHh
Confidence 455566666677778899986 43322222321 0011345555554455543 3456665 66778889
Q ss_pred CCCEEEEc-ccccccccHHHHHHHHHHcCCcEEEEECCC
Q 023494 138 GADIVSVH-CEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 175 (281)
Q Consensus 138 GAd~Itvh-~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~ 175 (281)
|+++|-=- .+ ..+ .+.++.++++|+.+.+.-..+
T Consensus 96 g~~iINdis~~---~~~-~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 96 GADIINDVSGG---RGD-PEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred CCCEEEeCCCC---CCC-hHHHHHHHHcCCCEEEECcCC
Confidence 98876432 22 112 567888899998777765433
No 387
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=94.68 E-value=0.4 Score=46.72 Aligned_cols=114 Identities=17% Similarity=0.224 Sum_probs=77.4
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----CCCCCHHHHHHhhc-----cCCEEEEEeecCC
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----NPATSLSAIECVLD-----VVDLVLIMSVNPG 199 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----~p~t~ie~~~~~l~-----~vD~IlvmsV~pG 199 (281)
+|++++++.|.|.+-+-..-.+..+++..++.+|+.|..+..++ +|-..++.+.++.+ .+|.|.+= .
T Consensus 102 ~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciK----D 177 (472)
T COG5016 102 KFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIK----D 177 (472)
T ss_pred HHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEee----c
Confidence 57888889999988765432135678899999999999887665 44444454444433 27888652 1
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
-+|-.-.....+-++.+++.++ ++|.+ .-|+..-+.-..++||||++
T Consensus 178 maGlltP~~ayelVk~iK~~~~-----~pv~lHtH~TsG~a~m~ylkAvEAGvD~i 228 (472)
T COG5016 178 MAGLLTPYEAYELVKAIKKELP-----VPVELHTHATSGMAEMTYLKAVEAGVDGI 228 (472)
T ss_pred ccccCChHHHHHHHHHHHHhcC-----CeeEEecccccchHHHHHHHHHHhCcchh
Confidence 2332222344677888877653 55554 67888888888999999987
No 388
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.65 E-value=0.85 Score=43.19 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=94.7
Q ss_pred CCCeeEEEEecChhhHHH---HHHHcCCCEEEEccccc---------------ccccHHHHHHHHHHcC--CcEEEEECC
Q 023494 115 DLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDLG--AKAGVVLNP 174 (281)
Q Consensus 115 ~~~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~~G--~k~Glai~p 174 (281)
..|+.++|-.+||....+ .+.+.|+|.|=+-.-+. ..+.+.++++++++.. +.+-+=+.-
T Consensus 66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 478999999999975533 34577888877653321 1234678888888875 455554433
Q ss_pred CCCH-----HHHHHhhcc--CCEEEEEeecCCCCCCccc-hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHH
Q 023494 175 ATSL-----SAIECVLDV--VDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 245 (281)
Q Consensus 175 ~t~i-----e~~~~~l~~--vD~IlvmsV~pG~~GQ~f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~ 245 (281)
+.+. ..+...+.. ++.+.|+ .-...|.+. |.-++.|+++++.++. ++|..-|+|. .+.+.++++
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~ltVH---gRtr~~~y~~~ad~~~I~~vk~~~~~----ipvi~NGdI~s~~~a~~~l~ 218 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTVH---GRTRAQGYLGPADWDYIKELKEAVPS----IPVIANGDIKSLEDAKEMLE 218 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEEEe---cccHHhcCCCccCHHHHHHHHHhCCC----CeEEeCCCcCCHHHHHHHHH
Confidence 3322 223444432 7777654 333344443 3557888888887642 7888999985 899998887
Q ss_pred c-CCcEEEEcccccCCCCH
Q 023494 246 A-GANALVAGSAVFGAKDY 263 (281)
Q Consensus 246 a-GAD~~VvGSaIf~a~dp 263 (281)
. |+|.+.+|++.++.+..
T Consensus 219 ~tg~DgVMigRga~~nP~l 237 (323)
T COG0042 219 YTGADGVMIGRGALGNPWL 237 (323)
T ss_pred hhCCCEEEEcHHHccCCcH
Confidence 5 69999999999876654
No 389
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.62 E-value=0.69 Score=44.29 Aligned_cols=140 Identities=14% Similarity=0.182 Sum_probs=92.1
Q ss_pred CCCeeEEEEecChhhHHHHH--HHcCCCEEEEccccc---------------ccccHHHHHHHHHHc-CCcEEEEECCCC
Q 023494 115 DLPLDVHLMIVEPEQRVPDF--IKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNPAT 176 (281)
Q Consensus 115 ~~~idaHLmv~dp~~~i~~~--~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~~-G~k~Glai~p~t 176 (281)
+.|+.+.+-.+||..+.+.+ .+.=+|.|-+-+-+. ..+-+.+.++.++++ |..+-+=|.-..
T Consensus 73 D~PLIvQf~~ndp~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~ 152 (358)
T KOG2335|consen 73 DRPLIVQFGGNDPENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFV 152 (358)
T ss_pred CCceEEEEcCCCHHHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecC
Confidence 57999999999999776543 333347666543221 112356777777753 555444333333
Q ss_pred CHHHHHHh---hc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHH-cCCc
Q 023494 177 SLSAIECV---LD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE-AGAN 249 (281)
Q Consensus 177 ~ie~~~~~---l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~-aGAD 249 (281)
+++.-..| +. .++++.|.+.-+-..|.+..|..++.|+.+++.+++ +++-+-|||. .+.+..+.+ .|||
T Consensus 153 d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~----ipviaNGnI~~~~d~~~~~~~tG~d 228 (358)
T KOG2335|consen 153 DLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD----IPVIANGNILSLEDVERCLKYTGAD 228 (358)
T ss_pred cHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC----CcEEeeCCcCcHHHHHHHHHHhCCc
Confidence 34332222 22 267887765555445655667778889998887653 7888999999 788888877 9999
Q ss_pred EEEEccccc
Q 023494 250 ALVAGSAVF 258 (281)
Q Consensus 250 ~~VvGSaIf 258 (281)
++-+|+++.
T Consensus 229 GVM~arglL 237 (358)
T KOG2335|consen 229 GVMSARGLL 237 (358)
T ss_pred eEEecchhh
Confidence 999998754
No 390
>PLN02979 glycolate oxidase
Probab=94.57 E-value=0.34 Score=46.70 Aligned_cols=96 Identities=11% Similarity=0.230 Sum_probs=64.0
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
+.++++|+. +..+.+ ..-...+..+...+ .+|.|.+- .+ |-.+....|.+++-|.++++.... +++|.+||
T Consensus 213 ~dl~wlr~~~~~Pviv--KgV~~~~dA~~a~~~Gvd~I~Vs-nh-GGrqld~~p~t~~~L~ei~~~~~~---~~~Vi~dG 285 (366)
T PLN02979 213 KDVQWLQTITKLPILV--KGVLTGEDARIAIQAGAAGIIVS-NH-GARQLDYVPATISALEEVVKATQG---RIPVFLDG 285 (366)
T ss_pred HHHHHHHhccCCCEEe--ecCCCHHHHHHHHhcCCCEEEEC-CC-CcCCCCCchhHHHHHHHHHHHhCC---CCeEEEeC
Confidence 457777765 444433 22234566666555 48999763 33 323334556677777777766532 47899999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
||. -..+-+.+..|||.+-+|+.+.
T Consensus 286 GIr~G~Di~KALALGAdaV~iGrp~L 311 (366)
T PLN02979 286 GVRRGTDVFKALALGASGIFIGRPVV 311 (366)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 999 4578888999999999998854
No 391
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=94.57 E-value=0.6 Score=46.92 Aligned_cols=169 Identities=15% Similarity=0.057 Sum_probs=94.0
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCC------CCeeEEEEe-cChh-hHHHHHHHc----CC
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTD------LPLDVHLMI-VEPE-QRVPDFIKA----GA 139 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~------~~idaHLmv-~dp~-~~i~~~~~a----GA 139 (281)
.+.++.|.+.|+|.|++ .| |.. .--.+.++.|.+... ..+..-++. .... ..++.+.++ |+
T Consensus 109 i~Ia~~L~~~GVd~IEv-----G~-Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~ 182 (503)
T PLN03228 109 LEIARQLAKLRVDIMEV-----GF-PGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAKR 182 (503)
T ss_pred HHHHHHHHHcCCCEEEE-----eC-CCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhcccCC
Confidence 34556778899998887 33 422 111234555543210 001122221 1111 135555555 67
Q ss_pred CEEEEccccccccc---------------HHHHHHHHHHcCCc-EEEEE--CCCCCHHHHHHhhcc-----CCEEEEEee
Q 023494 140 DIVSVHCEQSSTIH---------------LHRTLNQIKDLGAK-AGVVL--NPATSLSAIECVLDV-----VDLVLIMSV 196 (281)
Q Consensus 140 d~Itvh~Ea~~~~~---------------i~~~l~~ik~~G~k-~Glai--~p~t~ie~~~~~l~~-----vD~IlvmsV 196 (281)
+.|++..-.. ..+ +.+.++.+|+.|.+ +.+.. ...++.+.+.+++.. +|.|.+
T Consensus 183 ~~V~i~i~~S-d~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l--- 258 (503)
T PLN03228 183 PRILAFTSTS-DIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGI--- 258 (503)
T ss_pred CEEEEEecCC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEE---
Confidence 7787664331 222 45688889999986 33332 223566655555432 677654
Q ss_pred cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 197 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 197 ~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
+-..|-....++.+.++.+++.++.. .+++|++ |-|....|.-..+++||+.+=+
T Consensus 259 -~DTvG~~tP~~v~~lV~~l~~~~~~~-~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~ 317 (503)
T PLN03228 259 -ADTVGINMPHEFGELVTYVKANTPGI-DDIVFSVHCHNDLGLATANTIAGICAGARQVEV 317 (503)
T ss_pred -ecCCCCCCHHHHHHHHHHHHHHhccc-cCceeEecccCCcChHHHHHHHHHHhCCCEEEE
Confidence 33345444445566777777654321 1245666 7888888888899999998854
No 392
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=94.54 E-value=0.7 Score=44.36 Aligned_cols=175 Identities=17% Similarity=0.169 Sum_probs=91.5
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccc-c--cCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN-I--TIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn-~--~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~It 143 (281)
+...+.+.++.+.+.|+..+++ .-|. .|. . ..=.++++.||+. +...+.+..+ +.+ .++.+.++|++.++
T Consensus 104 s~eEI~~~a~~~~~~Gv~~i~l--vgGe-~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~l--t~e-~~~~Lk~aGv~r~~ 177 (366)
T TIGR02351 104 NEEEIEREIEAIKKSGFKEILL--VTGE-SEKAAGVEYIAEAIKLAREYFSSLAIEVQPL--NEE-EYKKLVEAGLDGVT 177 (366)
T ss_pred CHHHHHHHHHHHHhCCCCEEEE--eeCC-CCCCCCHHHHHHHHHHHHHhCCccccccccC--CHH-HHHHHHHcCCCEEE
Confidence 4455666777777889887765 3343 233 2 2234566666654 2233333222 222 45789999999999
Q ss_pred Ecccccc------------cccH---HHHHHHHHHcCCc-E--EEEECCC-CCHHHHH---------Hhhc----cCCEE
Q 023494 144 VHCEQSS------------TIHL---HRTLNQIKDLGAK-A--GVVLNPA-TSLSAIE---------CVLD----VVDLV 191 (281)
Q Consensus 144 vh~Ea~~------------~~~i---~~~l~~ik~~G~k-~--Glai~p~-t~ie~~~---------~~l~----~vD~I 191 (281)
+-.|+.. ..+. .+.++.+++.|++ + |+.+..+ +..+.+. ...+ .+-+.
T Consensus 178 i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~ 257 (366)
T TIGR02351 178 VYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVP 257 (366)
T ss_pred EEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 9888631 1122 3577888888875 4 4444433 2333222 1111 12233
Q ss_pred EEEeecCC-CCCC-ccchh-HHHHHHHHHHHhhhcCCCCeEEEecCCChhcHH-HHHHcCCcEEEEc
Q 023494 192 LIMSVNPG-FGGQ-SFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY-KVIEAGANALVAG 254 (281)
Q Consensus 192 lvmsV~pG-~~GQ-~f~~~-~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~-~~~~aGAD~~VvG 254 (281)
.+|.+ +| +..+ .+.+. .++.|..+|-+++. ..|-+.||=.. .++ .++..|+-.+-+|
T Consensus 258 ~l~P~-~g~~~~~~~l~~~~~~~~i~~~R~~~P~----~~i~~s~g~~~-~lrd~~~~~~~~~~~a~ 318 (366)
T TIGR02351 258 RLRPC-TNGLKPKVIVTDRELVQIICAYRLFDPF----VEISLSTRESK-KFRDNVIPLGITKMSAG 318 (366)
T ss_pred ccccC-CCCCCCCCcCCHHHHHHHHHHHHHhCcc----cccEEecCCCH-HHHHHHHhhcceeeccC
Confidence 34544 33 2222 23333 35556666666654 45778898543 333 2334454444333
No 393
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=94.53 E-value=0.82 Score=43.35 Aligned_cols=182 Identities=15% Similarity=0.159 Sum_probs=97.1
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcC-CCCCeeEEEEe------------cChhhHH
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPV-TDLPLDVHLMI------------VEPEQRV 131 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~-t~~~idaHLmv------------~dp~~~i 131 (281)
.+...+.++++.+.+.|++.+++ .+|.. |.. .+=.++++.||+. +++. +|..+ .-..+.+
T Consensus 70 ls~eeI~e~~~~~~~~G~~~i~l--~gG~~-p~~~~~~~~~i~~~Ik~~~~~i~--~~~~t~~ei~~~~~~~g~~~~e~l 144 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAGATEVCI--QGGIH-PDLDGDFYLDILRAVKEEVPGMH--IHAFSPMEVYYGARNSGLSVEEAL 144 (343)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--EeCCC-CCCCHHHHHHHHHHHHHHCCCce--EEecCHHHHHHHHHHcCCCHHHHH
Confidence 46667777888888889987665 46643 433 2235678888775 3332 33221 0113467
Q ss_pred HHHHHcCCCEEEE-ccccc-------------ccccHHHHHHHHHHcCCcE--EEEECCCCCHHHHHHhhc---c--CCE
Q 023494 132 PDFIKAGADIVSV-HCEQS-------------STIHLHRTLNQIKDLGAKA--GVVLNPATSLSAIECVLD---V--VDL 190 (281)
Q Consensus 132 ~~~~~aGAd~Itv-h~Ea~-------------~~~~i~~~l~~ik~~G~k~--Glai~p~t~ie~~~~~l~---~--vD~ 190 (281)
+.+.++|.+.+.. ..|.. +.++..+.++.+++.|+++ |+.+......+...+.+. . .++
T Consensus 145 ~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~ 224 (343)
T TIGR03551 145 KRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQEET 224 (343)
T ss_pred HHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhhHHh
Confidence 8899999998862 22321 1123467888899999987 455654444444333322 1 343
Q ss_pred EEEEee------cCCCC----CCc---cc-hhHHHHHHHHHHHhhhcCCCCeEEEecC---CChhcHHHHHHcCCcEEEE
Q 023494 191 VLIMSV------NPGFG----GQS---FI-ESQVKKISDLRRMCLEKGVNPWIEVDGG---VGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 191 IlvmsV------~pG~~----GQ~---f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGG---I~~e~i~~~~~aGAD~~Vv 253 (281)
..+... +||.. ++. .. .+.+.-|.-.|=+++. ..+-+-|| ++.........+|||.+
T Consensus 225 ~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~----~~~~i~a~~~~l~~~~~~~~l~~Gan~~-- 298 (343)
T TIGR03551 225 GGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHG----LIDNIQASWVKLGKKLAQVALRCGANDL-- 298 (343)
T ss_pred CCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCC----cccCeeccccccCHHHHHHHHhCCCccC--
Confidence 221111 23532 111 11 2334445444544442 21223444 33444578899999976
Q ss_pred cccccC
Q 023494 254 GSAVFG 259 (281)
Q Consensus 254 GSaIf~ 259 (281)
|+.++.
T Consensus 299 ~g~~~~ 304 (343)
T TIGR03551 299 GGTLME 304 (343)
T ss_pred Ccccee
Confidence 434543
No 394
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=94.51 E-value=2.7 Score=38.14 Aligned_cols=180 Identities=22% Similarity=0.272 Sum_probs=102.6
Q ss_pred eccCccCHHHHHHHHHHcCCCeEEE-Eeee-CcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 65 LSANFAKLGEQVKAVELAGCDWIHV-DVMD-GRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 65 la~D~~~l~~~l~~l~~~G~d~iHi-DImD-G~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
+..+-..|.+....+++-|..-+-+ .=|| -.+||.-.| .+.++++++.+++.+.+|.=..| +.+++.+.+.++|.+
T Consensus 37 i~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf-~d~lK~lke~~~l~inaHvGfvd-E~~~eklk~~~vdvv 114 (275)
T COG1856 37 IKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKF-KDELKALKERTGLLINAHVGFVD-ESDLEKLKEELVDVV 114 (275)
T ss_pred cccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHH-HHHHHHHHHhhCeEEEEEeeecc-HHHHHHHHHhcCcEE
Confidence 3344444555555677666654322 2344 246775555 46788999989999999999988 779999999999999
Q ss_pred EEccccc------------ccccHHHHHHHHHHcCCcE------EEEECC-CCCHHHHHHhhc-cCCEEEEEeec--CCC
Q 023494 143 SVHCEQS------------STIHLHRTLNQIKDLGAKA------GVVLNP-ATSLSAIECVLD-VVDLVLIMSVN--PGF 200 (281)
Q Consensus 143 tvh~Ea~------------~~~~i~~~l~~ik~~G~k~------Glai~p-~t~ie~~~~~l~-~vD~IlvmsV~--pG~ 200 (281)
++-.-.. +.++.-+.+..++++|+++ |+...- ....+.+.-+.. ..|.+.+--.- ||.
T Consensus 115 sLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGt 194 (275)
T COG1856 115 SLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGT 194 (275)
T ss_pred EEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCch
Confidence 9875421 1223345567788899886 333211 123333332222 35654433333 453
Q ss_pred C-CCccc---hhHHHHHHHHHHHhhhcCCCCeEEEecCCCh------hcHHHHHHcCCcEEE
Q 023494 201 G-GQSFI---ESQVKKISDLRRMCLEKGVNPWIEVDGGVGP------KNAYKVIEAGANALV 252 (281)
Q Consensus 201 ~-GQ~f~---~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~------e~i~~~~~aGAD~~V 252 (281)
. +..+. ++..+-++.+|+.++ + ++ +-|=..+ +-=++.+.+|+|.+.
T Consensus 195 km~~~~pp~~eE~i~v~~~AR~~f~----~-pv-~iGCmrP~Ge~rvk~d~~av~~gVd~It 250 (275)
T COG1856 195 KMGNSPPPPVEEAIKVVKYARKKFP----N-PV-SIGCMRPRGEWRVKLDKEAVLAGVDRIT 250 (275)
T ss_pred hccCCCCcCHHHHHHHHHHHHHhCC----C-Ce-eEeecCcCchhHHHHHHHHHHcCCceee
Confidence 2 22232 233444555555543 2 34 2344432 223466788888663
No 395
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=94.48 E-value=0.29 Score=51.76 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=87.3
Q ss_pred HHHHHH-cCCCE--EEEcccccccccHHHHHHHHHHcC-------CcEEEEECCCCCHHHHHHhhccCCEEEEEeecC--
Q 023494 131 VPDFIK-AGADI--VSVHCEQSSTIHLHRTLNQIKDLG-------AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP-- 198 (281)
Q Consensus 131 i~~~~~-aGAd~--Itvh~Ea~~~~~i~~~l~~ik~~G-------~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~p-- 198 (281)
+..+.+ .|++. |.|+.-. +.++..++.+.++..| ..+|+.+....-+..+++++..+|++.+.+-+-
T Consensus 626 I~rald~~G~~~~~ImvPmV~-s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~IGtnDLtq 704 (795)
T PRK06464 626 IKRVREEMGLTNVEVMIPFVR-TVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSIGSNDLTQ 704 (795)
T ss_pred HHHHHHhcCCCCeEEEecCCC-CHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEECchHHHH
Confidence 344556 68776 6665543 3566777777776554 457777865556677888888899998854332
Q ss_pred ---C---------CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec---CCChhcHHHHHHcCCcEEEEccc
Q 023494 199 ---G---------FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG---GVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 199 ---G---------~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG---GI~~e~i~~~~~aGAD~~VvGSa 256 (281)
| ..++...|..++-|+++.+-.+++| .++.+-| |-+++.++.+++.|++.+.+++.
T Consensus 705 ~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g--~~vgicge~a~~~p~~~~~l~~~G~~~ls~~~d 775 (795)
T PRK06464 705 LTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAG--KYVGICGQAPSDHPDFAEWLVEEGIDSISLNPD 775 (795)
T ss_pred HHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcC--CEEEEcCCCCCCcHHHHHHHHHCCCCEEEEcch
Confidence 1 1356678999999999888877654 5677755 33388999999999999999954
No 396
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=94.43 E-value=2 Score=40.80 Aligned_cols=186 Identities=14% Similarity=0.139 Sum_probs=109.9
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCc---CC--CCCeeEEEEecChhhHHHHHHHcCCC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRP---VT--DLPLDVHLMIVEPEQRVPDFIKAGAD 140 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~---~t--~~~idaHLmv~dp~~~i~~~~~aGAd 140 (281)
|+..+.-.++.+++.+...| +-+-.+. |.+. .+-..++..++. .. ..|+-+||==..-...+..++++|.+
T Consensus 33 n~e~~~avi~AAee~~sPvI-lq~s~~~~~~~g~-~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~Gft 110 (321)
T PRK07084 33 NMEQLQAIIQACVETKSPVI-LQVSKGARKYANA-TLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFS 110 (321)
T ss_pred CHHHHHHHHHHHHHhCCCEE-EEechhHHhhCCc-hHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCC
Confidence 44445566677777777765 4444432 2220 001122322222 12 57899988554444578889999988
Q ss_pred EEEEcccccc----cccHHHHHHHHHHcCCcE----EEE--------ECC--CCCHHHHHHhhc--cCCEEEE--EeecC
Q 023494 141 IVSVHCEQSS----TIHLHRTLNQIKDLGAKA----GVV--------LNP--ATSLSAIECVLD--VVDLVLI--MSVNP 198 (281)
Q Consensus 141 ~Itvh~Ea~~----~~~i~~~l~~ik~~G~k~----Gla--------i~p--~t~ie~~~~~l~--~vD~Ilv--msV~p 198 (281)
.|-+=.-..+ ...-.++.+.++.+|+-+ |-. -.. -|..+...++.. .+|.+.+ .++|-
T Consensus 111 SVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG 190 (321)
T PRK07084 111 SVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHG 190 (321)
T ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccc
Confidence 7776543322 122457778888888654 221 011 356777888876 4887654 34442
Q ss_pred CCCC-Cc-cchh-HHHHHHHHHHHhhhcCCCCeEEEec-----------------------CCChhcHHHHHHcCCcEEE
Q 023494 199 GFGG-QS-FIES-QVKKISDLRRMCLEKGVNPWIEVDG-----------------------GVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 199 G~~G-Q~-f~~~-~l~kI~~lr~l~~~~~~~~~I~VDG-----------------------GI~~e~i~~~~~aGAD~~V 252 (281)
-+.+ +. +.|. -+++|+++++.+. ++++..=| |+..|.++++++.|+.-|=
T Consensus 191 ~Y~~~~~~~~p~Ld~d~L~~I~~~~~----~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KIN 266 (321)
T PRK07084 191 AYKFKPGQCPPPLRFDILEEIEKRIP----GFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKIN 266 (321)
T ss_pred cccCCCCCCCCccCHHHHHHHHHhcC----CCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceec
Confidence 2222 10 1222 3677777777652 36776655 5567899999999999999
Q ss_pred EcccccC
Q 023494 253 AGSAVFG 259 (281)
Q Consensus 253 vGSaIf~ 259 (281)
+++.+..
T Consensus 267 i~Tdl~~ 273 (321)
T PRK07084 267 IDSDGRL 273 (321)
T ss_pred cchHHHH
Confidence 9988753
No 397
>PRK14566 triosephosphate isomerase; Provisional
Probab=94.42 E-value=0.84 Score=42.04 Aligned_cols=136 Identities=18% Similarity=0.256 Sum_probs=81.2
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCCC-------H----HHHHHhhccC-----
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS-------L----SAIECVLDVV----- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t~-------i----e~~~~~l~~v----- 188 (281)
.+++.++|++++.+. .|- .+.+.+.+-++.+.++|+.+.+-+.-... . +.++..++..
T Consensus 88 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~ 167 (260)
T PRK14566 88 GQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAF 167 (260)
T ss_pred HHHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhccchhhc
Confidence 578899999999885 221 02445677888899999998887753211 1 1222333311
Q ss_pred CEEEEEeecCCC---CCCccchhHHHH-HHHHHHHhhhc----CCCCeEEEecCCChhcHHHHH-HcCCcEEEEcccccC
Q 023494 189 DLVLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLEK----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVFG 259 (281)
Q Consensus 189 D~IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~~----~~~~~I~VDGGI~~e~i~~~~-~aGAD~~VvGSaIf~ 259 (281)
+-| +..=+|-+ +|+.-.|+-.++ ...+|+.+.+. ..+++|.=.|.++++|+.++. ....|++-+|++=.+
T Consensus 168 ~~i-vIAYEPvWAIGTG~~At~e~a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~dIDG~LVGgASL~ 246 (260)
T PRK14566 168 DNA-IIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLN 246 (260)
T ss_pred CcE-EEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCccccccceEEecCCCCHhHHHHHhcCCCCCeEEechHhcC
Confidence 111 22336643 244433443333 23445444321 124678889999999999874 456999999998776
Q ss_pred CCCHHHHH
Q 023494 260 AKDYAEAI 267 (281)
Q Consensus 260 a~dp~~~~ 267 (281)
+++..+.+
T Consensus 247 ~~~F~~Ii 254 (260)
T PRK14566 247 STEFLSLC 254 (260)
T ss_pred HHHHHHHH
Confidence 65544443
No 398
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=94.41 E-value=2.5 Score=38.65 Aligned_cols=97 Identities=23% Similarity=0.216 Sum_probs=53.7
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC---------CHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI---------GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~---------G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|+....+..+.+.+.|+|+| ||==...-|+... =..+++.|++..+.|+-+ =+.+|. .++.+.++|
T Consensus 22 ~~~~~~~~a~~~~~~GAdiI--DIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSI--DT~~~~-v~e~al~~G 96 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADII--DIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISV--DTFRAE-VARAALEAG 96 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEE--EECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEE--eCCCHH-HHHHHHHhC
Confidence 44444455556667899986 5420000122110 112356666554555433 234444 567788899
Q ss_pred CCEEE-EcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 139 ADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 139 Ad~It-vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
+++|- +-.+. .+ .+.++.++++|+.+.+.-.
T Consensus 97 ~~iINdisg~~---~~-~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 97 ADIINDVSGGS---DD-PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred CCEEEeCCCCC---CC-hHHHHHHHHcCCCEEEECC
Confidence 99875 44442 12 5677888899987777433
No 399
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.38 E-value=3.8 Score=37.75 Aligned_cols=188 Identities=15% Similarity=0.173 Sum_probs=109.5
Q ss_pred CceEeEEEecc-CccCHHHHHHHHHHcCCCeEEEEeeeCccccc-c-cCCHHHHHHcCcC---CCCCeeEEEEecChhhH
Q 023494 57 DIIVSPSILSA-NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN-I-TIGPLVVDALRPV---TDLPLDVHLMIVEPEQR 130 (281)
Q Consensus 57 ~~~i~pSila~-D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn-~-~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~ 130 (281)
.+.+...-.+. |.....+..+.+.+.|+.++-...-|-...|. + .+|.+.++.++++ .++++....+ ||. .
T Consensus 27 ~~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~--d~~-~ 103 (266)
T PRK13398 27 EKIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVM--DTR-D 103 (266)
T ss_pred CEEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeC--Chh-h
Confidence 44444444444 44455666677888899987776666443432 2 4566666666654 5667666443 333 4
Q ss_pred HHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc------CCEEEEEeecCCCCCCc
Q 023494 131 VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV------VDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~------vD~IlvmsV~pG~~GQ~ 204 (281)
++.+.+. +|++-+.... ..+ ..+++++-+.|+-+++.-...-.++++....+. -+.+++.+-.+.+.+.+
T Consensus 104 ~~~l~~~-vd~~kIga~~--~~n-~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~ 179 (266)
T PRK13398 104 VEEVADY-ADMLQIGSRN--MQN-FELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYT 179 (266)
T ss_pred HHHHHHh-CCEEEECccc--ccC-HHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCC
Confidence 4555566 8999998774 232 457888888898888887766344433332221 35555433222222222
Q ss_pred cchhH--HHHHHHHHHHhhhcCCCCeEEEec--CCC-----hhcHHHHHHcCCcEEEEccccc
Q 023494 205 FIESQ--VKKISDLRRMCLEKGVNPWIEVDG--GVG-----PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 205 f~~~~--l~kI~~lr~l~~~~~~~~~I~VDG--GI~-----~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+.. +..|..+++. .+++|.+|- +++ +......+.+|||++++=+-+.
T Consensus 180 --~~~vdl~~i~~lk~~-----~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 180 --RNTLDLAAVAVIKEL-----SHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred --HHHHHHHHHHHHHhc-----cCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 233 3344444433 246788863 333 4456667899999999887765
No 400
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=94.37 E-value=0.68 Score=45.50 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=54.8
Q ss_pred cccchhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCC
Q 023494 37 RRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 116 (281)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~ 116 (281)
+.|++....|-.+.++=.......++-|-+ |...+.+..+.+.+.|++.+.+|++= .|...++.|++.++.
T Consensus 208 ~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-~~~em~~ra~~a~~~G~~~vmv~~~~--------~G~~al~~L~~~~~l 278 (424)
T cd08208 208 EERAALLGKARRRAEAETGVPKIYLANITD-EVDRLMELHDVAVRNGANALLINAMP--------VGLSAVRMLRKHAQV 278 (424)
T ss_pred HHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHHHHHHHHHHHHhCCCEEEEeeec--------ccHHHHHHHHhcCCC
Confidence 555666655554444433334566777774 88888888889999999998887443 467789999887778
Q ss_pred CeeEEE
Q 023494 117 PLDVHL 122 (281)
Q Consensus 117 ~idaHL 122 (281)
+|.+|=
T Consensus 279 ~ihaHr 284 (424)
T cd08208 279 PLIAHF 284 (424)
T ss_pred eEEecc
Confidence 888774
No 401
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=94.34 E-value=0.73 Score=36.51 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCC-CCeEEE
Q 023494 155 HRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEV 231 (281)
Q Consensus 155 ~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~-~~~I~V 231 (281)
.-+...++..|.++ +.+.+.+|.+.+.+.+. .+|+|.+-+.. ++.+ +...+-++.+| +.+. ++.|.+
T Consensus 17 ~~~~~~l~~~G~~V-~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~----~~~~-~~~~~~i~~l~----~~~~~~~~i~v 86 (119)
T cd02067 17 NIVARALRDAGFEV-IDLGVDVPPEEIVEAAKEEDADAIGLSGLL----TTHM-TLMKEVIEELK----EAGLDDIPVLV 86 (119)
T ss_pred HHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccc----cccH-HHHHHHHHHHH----HcCCCCCeEEE
Confidence 33455677889888 66667788877766554 37888763221 2211 23333333333 3344 677877
Q ss_pred ecCCChhcHHHHHHcCCcEEEE
Q 023494 232 DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 232 DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
.|..-.+....+.+.|+|.++-
T Consensus 87 GG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 87 GGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred ECCCCChhHHHHHHcCCeEEEC
Confidence 7777666567889999998763
No 402
>PRK03739 2-isopropylmalate synthase; Validated
Probab=94.30 E-value=2.7 Score=42.80 Aligned_cols=198 Identities=22% Similarity=0.184 Sum_probs=110.1
Q ss_pred hhhhcccccc-CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH-HHHHHcCcCCCC-Cee
Q 023494 43 IVKASARVDK-FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP-LVVDALRPVTDL-PLD 119 (281)
Q Consensus 43 ~~~~~~~~~~-~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~-~~I~~ir~~t~~-~id 119 (281)
+-++..|+|- ++++.= +|.+ .+...+=-+..+.|.+.|+|.|++ | | |..+-+. ++++.|.+. +. +-+
T Consensus 27 ~~~~~~i~dttLRDGeQ--~~gv-~~s~~~Ki~ia~~L~~~GV~~IE~----G-f-P~~s~~e~e~v~~i~~~-~~~~~~ 96 (552)
T PRK03739 27 ITKAPIWCSVDLRDGNQ--ALIE-PMSPERKLRMFDLLVKIGFKEIEV----G-F-PSASQTDFDFVRELIEE-GLIPDD 96 (552)
T ss_pred cCCCCeEeeCCCCCcCc--CCCC-CCCHHHHHHHHHHHHHcCCCEEEE----E-C-CCcChHHHHHHHHHHHh-cCCCCC
Confidence 4557778777 666541 2222 122222223445677889988887 4 5 7666555 778887432 11 113
Q ss_pred EEEEe--cChhhHHHHHHHc--CCC--EEEEccccc----------c----cccHHHHHHHHHHcCCc-----EEEEECC
Q 023494 120 VHLMI--VEPEQRVPDFIKA--GAD--IVSVHCEQS----------S----TIHLHRTLNQIKDLGAK-----AGVVLNP 174 (281)
Q Consensus 120 aHLmv--~dp~~~i~~~~~a--GAd--~Itvh~Ea~----------~----~~~i~~~l~~ik~~G~k-----~Glai~p 174 (281)
+.+++ -+....++.+.++ |++ .|++-.-++ + .+.+.+.++.+|++|.. .++.+.+
T Consensus 97 ~~i~~l~r~~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~ 176 (552)
T PRK03739 97 VTIQVLTQAREHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSP 176 (552)
T ss_pred CEEEEEeccchhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEec
Confidence 33343 3333457777665 444 455543221 0 11245666777777743 4566677
Q ss_pred C----CCHHHHHHhhcc--------CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChh
Q 023494 175 A----TSLSAIECVLDV--------VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK 238 (281)
Q Consensus 175 ~----t~ie~~~~~l~~--------vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e 238 (281)
. ++.+.+.+++.. +|...... -|..-|.....++.+.++.+++.++.. .+.+|++ |-|.-..
T Consensus 177 EDasR~d~~~l~~~~~~a~~~~~ag~~~~~~i~-l~DTvG~~~P~~~~~~v~~l~~~~~~~-~~~~i~vH~HND~GlAvA 254 (552)
T PRK03739 177 ESFTGTELDFALEVCDAVIDVWQPTPERKVILN-LPATVEMSTPNVYADQIEWMCRNLARR-DSVILSLHPHNDRGTGVA 254 (552)
T ss_pred ccCCCCCHHHHHHHHHHHHHhhcCCCCceeEEE-eccCCcCcCHHHHHHHHHHHHHhCCcc-cCceEEEEeCCCCChHHH
Confidence 7 777776666543 12111111 244445433344456677776654311 1346776 8899988
Q ss_pred cHHHHHHcCCcEEE
Q 023494 239 NAYKVIEAGANALV 252 (281)
Q Consensus 239 ~i~~~~~aGAD~~V 252 (281)
|.-..+++||+.+=
T Consensus 255 NslaAv~aGa~~v~ 268 (552)
T PRK03739 255 AAELALMAGADRVE 268 (552)
T ss_pred HHHHHHHhCCCEEE
Confidence 88888999999864
No 403
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.28 E-value=0.56 Score=43.91 Aligned_cols=182 Identities=16% Similarity=0.150 Sum_probs=102.4
Q ss_pred CCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEE----------eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe
Q 023494 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVD----------VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI 124 (281)
Q Consensus 55 ~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiD----------ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv 124 (281)
.....+.|..+ +-.. -+.++++|.+.+.+= .=|+.+++ ++.-...++.|...+++|+.+|.=.
T Consensus 15 ~~~~l~~p~~~-----Da~S-Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~-~~e~~~~~~~I~~~~~iPviaD~d~ 87 (292)
T PRK11320 15 AEKPLQIVGTI-----NAYH-ALLAERAGFKAIYLSGGGVAAASLGLPDLGITT-LDDVLIDVRRITDACDLPLLVDIDT 87 (292)
T ss_pred CCCcEEecCCC-----CHHH-HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCC-HHHHHHHHHHHHhccCCCEEEECCC
Confidence 33456666654 2222 245556666665431 22432222 2333556677777778999998877
Q ss_pred c--Chhh---HHHHHHHcCCCEEEEcccc-------------cccccHHHHHHHHHHcCCcEEEEECCCCC---------
Q 023494 125 V--EPEQ---RVPDFIKAGADIVSVHCEQ-------------SSTIHLHRTLNQIKDLGAKAGVVLNPATS--------- 177 (281)
Q Consensus 125 ~--dp~~---~i~~~~~aGAd~Itvh~Ea-------------~~~~~i~~~l~~ik~~G~k~Glai~p~t~--------- 177 (281)
- +|.. .++.+.++|+-.|++-.-. .+.++..+-|+.+++.-....+.|+--|+
T Consensus 88 GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~de 167 (292)
T PRK11320 88 GFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDA 167 (292)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHH
Confidence 3 6654 4888999999888773211 01222333444444432222233333332
Q ss_pred -HHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE---EEecCCCh-hcHHHHHHcCCcEE
Q 023494 178 -LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI---EVDGGVGP-KNAYKVIEAGANAL 251 (281)
Q Consensus 178 -ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I---~VDGGI~~-e~i~~~~~aGAD~~ 251 (281)
+++.+.|.+ .+|.|.+ ||. ..++.++++.+.++ .++ .+.||-++ -+..++.+.|++.+
T Consensus 168 AI~Ra~aY~eAGAD~ifi----~~~-------~~~~~i~~~~~~~~-----~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v 231 (292)
T PRK11320 168 AIERAQAYVEAGADMIFP----EAM-------TELEMYRRFADAVK-----VPILANITEFGATPLFTTEELASAGVAMV 231 (292)
T ss_pred HHHHHHHHHHcCCCEEEe----cCC-------CCHHHHHHHHHhcC-----CCEEEEeccCCCCCCCCHHHHHHcCCcEE
Confidence 355556666 4899876 332 23555555555442 233 23466553 47889999999999
Q ss_pred EEcccccC
Q 023494 252 VAGSAVFG 259 (281)
Q Consensus 252 VvGSaIf~ 259 (281)
+.|...+.
T Consensus 232 ~~~~~~~~ 239 (292)
T PRK11320 232 LYPLSAFR 239 (292)
T ss_pred EEChHHHH
Confidence 99987664
No 404
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=94.24 E-value=1.6 Score=42.79 Aligned_cols=166 Identities=19% Similarity=0.203 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEE--EecChhhHHHHHHHcCCCEEEEccccc--
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHL--MIVEPEQRVPDFIKAGADIVSVHCEQS-- 149 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHL--mv~dp~~~i~~~~~aGAd~Itvh~Ea~-- 149 (281)
+..+.|.+.|+|+|++ |.++ .-.-.++.++.+....+....+-. ...+-.+-++.+.++|++.|++-..+.
T Consensus 28 ~Ia~~Ld~lGv~~IE~----g~p~-~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~~tSd~ 102 (409)
T COG0119 28 RIAKALDDLGVDYIEA----GFPV-ASPGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGVDRIHIFIATSDL 102 (409)
T ss_pred HHHHHHHHcCCCEEEE----eCCc-CChhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCCCEEEEEEcCCHH
Confidence 4556778899999887 4322 123345666666531111111111 111112346778899999988765442
Q ss_pred ------------ccccHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHH
Q 023494 150 ------------STIHLHRTLNQIKDLGAKAGVV--LNPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQV 210 (281)
Q Consensus 150 ------------~~~~i~~~l~~ik~~G~k~Gla--i~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l 210 (281)
..+-+.+.+++++++|+++-.. -...|+.+.+.++.+. ++.|.+ |-.-|-.-...+.
T Consensus 103 h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l----~DTvG~~~P~~~~ 178 (409)
T COG0119 103 HLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINL----PDTVGVATPNEVA 178 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEE----CCCcCccCHHHHH
Confidence 0112557788899999887743 2335677666665443 455543 3333433334556
Q ss_pred HHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 211 KKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
+.++.+++.++. ..++++ |-|.-..|.-..+++||+.+
T Consensus 179 ~~i~~l~~~v~~---~~~l~~H~HnD~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 179 DIIEALKANVPN---KVILSVHCHNDLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred HHHHHHHHhCCC---CCeEEEEecCCcchHHHHHHHHHHcCCcEE
Confidence 778888877652 256666 88888888889999999966
No 405
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=94.24 E-value=0.19 Score=50.11 Aligned_cols=131 Identities=8% Similarity=0.024 Sum_probs=79.2
Q ss_pred CccCHHHHHHHHH-HcCCCeEEEEeeeCcccccccCCHHHHHHcCcC--CCCCeeEEEEecCh---hhHHHHHHHcCCCE
Q 023494 68 NFAKLGEQVKAVE-LAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEP---EQRVPDFIKAGADI 141 (281)
Q Consensus 68 D~~~l~~~l~~l~-~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~--t~~~idaHLmv~dp---~~~i~~~~~aGAd~ 141 (281)
++.++.++++.+. +.|+..+ .+.|.+|..+-..-.++.+.|.+. .++.+.+..-+.+. .+.++.+.++|...
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~--~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~ 300 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFF--ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVH 300 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEE--EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcE
Confidence 4456677787775 4678765 557877665543334556666442 12333332222221 34778889999999
Q ss_pred EEEccccccc------------ccHHHHHHHHHHcCCcEEEE--EC-CCCCHHHHHHhhc-----cCCEEEE--EeecCC
Q 023494 142 VSVHCEQSST------------IHLHRTLNQIKDLGAKAGVV--LN-PATSLSAIECVLD-----VVDLVLI--MSVNPG 199 (281)
Q Consensus 142 Itvh~Ea~~~------------~~i~~~l~~ik~~G~k~Gla--i~-p~t~ie~~~~~l~-----~vD~Ilv--msV~pG 199 (281)
|.+..|+.+. ++..+.++.++++|+.+.+. +. |+...+.+++-++ .+|.+.+ ++..||
T Consensus 301 v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PG 380 (497)
T TIGR02026 301 ISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPF 380 (497)
T ss_pred EEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCC
Confidence 9999997521 23567888899999977543 33 5655555554433 2576554 444666
Q ss_pred C
Q 023494 200 F 200 (281)
Q Consensus 200 ~ 200 (281)
.
T Consensus 381 T 381 (497)
T TIGR02026 381 T 381 (497)
T ss_pred c
Confidence 4
No 406
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.15 E-value=0.82 Score=41.44 Aligned_cols=166 Identities=14% Similarity=0.186 Sum_probs=89.9
Q ss_pred HHHHHHcCCCeEEEE---------eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe--cChh---hHHHHHHHcCCCE
Q 023494 76 VKAVELAGCDWIHVD---------VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--VEPE---QRVPDFIKAGADI 141 (281)
Q Consensus 76 l~~l~~~G~d~iHiD---------ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv--~dp~---~~i~~~~~aGAd~ 141 (281)
-+.+++.|.+.+-+- .-|+..++ +..=...++.|.+.++.|+.+|+-. -++. +.++.+.++|++.
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~-~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~g 100 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDGGLLT-LDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAG 100 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCCCcCC-HHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 345666788887663 12222111 1222344555555567899998877 2433 3477888999999
Q ss_pred EEE--------cc-----cccccccHHHHHHHHHHc--C-CcEEEEEC-----CC-----CCHHHHHHhhcc-CCEEEEE
Q 023494 142 VSV--------HC-----EQSSTIHLHRTLNQIKDL--G-AKAGVVLN-----PA-----TSLSAIECVLDV-VDLVLIM 194 (281)
Q Consensus 142 Itv--------h~-----Ea~~~~~i~~~l~~ik~~--G-~k~Glai~-----p~-----t~ie~~~~~l~~-vD~Ilvm 194 (281)
|.+ .. ...+.++..+-++.+++. + -.+-|.-. .. .-+++.+.|.+. +|.|.+.
T Consensus 101 v~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~ 180 (243)
T cd00377 101 IHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVE 180 (243)
T ss_pred EEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 999 11 111233344444444442 2 13333222 11 133555556654 8999874
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE---ecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV---DGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V---DGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+.. ..+.++++.+.. +.++.+ .|+ +.-+..++.+.|++.++.|...+.
T Consensus 181 ~~~-----------~~~~~~~~~~~~-----~~Pl~~~~~~~~-~~~~~~~l~~lG~~~v~~~~~~~~ 231 (243)
T cd00377 181 GLK-----------DPEEIRAFAEAP-----DVPLNVNMTPGG-NLLTVAELAELGVRRVSYGLALLR 231 (243)
T ss_pred CCC-----------CHHHHHHHHhcC-----CCCEEEEecCCC-CCCCHHHHHHCCCeEEEEChHHHH
Confidence 221 223444444332 234333 333 124677778889999999987764
No 407
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=94.12 E-value=2 Score=34.50 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=60.9
Q ss_pred HHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCC-CCeEEEecCC
Q 023494 159 NQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDGGV 235 (281)
Q Consensus 159 ~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~-~~~I~VDGGI 235 (281)
..++..|.++ +.+.+.+|.+.+.+.+. .+|+|.+-+.. +...+.++++.+.+.+.+. ++.+.+.|..
T Consensus 21 ~~l~~~G~~v-i~lG~~vp~e~~~~~a~~~~~d~V~iS~~~---------~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~ 90 (122)
T cd02071 21 RALRDAGFEV-IYTGLRQTPEEIVEAAIQEDVDVIGLSSLS---------GGHMTLFPEVIELLRELGAGDILVVGGGII 90 (122)
T ss_pred HHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEcccc---------hhhHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 3456666554 45566678877666544 48888763222 2334445555555544444 5677777777
Q ss_pred ChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 236 GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 236 ~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
..+...++.++|.|.++-+ ..++++.+..|+
T Consensus 91 ~~~~~~~~~~~G~d~~~~~-----~~~~~~~~~~~~ 121 (122)
T cd02071 91 PPEDYELLKEMGVAEIFGP-----GTSIEEIIDKIR 121 (122)
T ss_pred CHHHHHHHHHCCCCEEECC-----CCCHHHHHHHHh
Confidence 7888999999999988755 345555555544
No 408
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=94.11 E-value=1.8 Score=40.91 Aligned_cols=112 Identities=14% Similarity=0.246 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC
Q 023494 156 RTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (281)
Q Consensus 156 ~~l~~ik~~G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG 234 (281)
+.++++|+.-.-+.+.=.--| .|+.+.-. -.++-|+| + +-|-..+.+.|.+++-+.++.+.... .+++..|||
T Consensus 213 ~Di~wLr~~T~LPIvvKGilt-~eDA~~Ave~G~~GIIV-S-NHGgRQlD~vpAtI~~L~Evv~aV~~---ri~V~lDGG 286 (363)
T KOG0538|consen 213 KDIKWLRSITKLPIVVKGVLT-GEDARKAVEAGVAGIIV-S-NHGGRQLDYVPATIEALPEVVKAVEG---RIPVFLDGG 286 (363)
T ss_pred hhhHHHHhcCcCCeEEEeecc-cHHHHHHHHhCCceEEE-e-CCCccccCcccchHHHHHHHHHHhcC---ceEEEEecC
Confidence 456677765433333211111 12222222 24777765 3 44656777889999988888877754 478889999
Q ss_pred CChh-cHHHHHHcCCcEEEEcccc-cC-----CCCHHHHHHHHHHh
Q 023494 235 VGPK-NAYKVIEAGANALVAGSAV-FG-----AKDYAEAIKGIKTS 273 (281)
Q Consensus 235 I~~e-~i~~~~~aGAD~~VvGSaI-f~-----a~dp~~~~~~l~~~ 273 (281)
|... .+-+.+..||..+-+|+-+ |+ ..-.++.++-|++.
T Consensus 287 VR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~e 332 (363)
T KOG0538|consen 287 VRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDE 332 (363)
T ss_pred cccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHHH
Confidence 9954 5667799999999999875 43 23455666666653
No 409
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=94.10 E-value=2.6 Score=37.68 Aligned_cols=171 Identities=15% Similarity=0.084 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 152 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~ 152 (281)
.+.+..+.+.|++++ | +..+..+..-.+.+|+.. ..-.|++-.-..+...... .-++++..-.. .+
T Consensus 40 ~~~i~~l~~~G~~~f------g--~~~~~Ea~~k~~~lr~~~--~~~~~~ig~~q~~~~~~~~-~~~~l~~~vds---~~ 105 (229)
T TIGR00044 40 ASAIQIAYDAGQRAF------G--ENYVQELVEKIKLLEDLG--KLEWHFIGPLQSNKDRLVV-ENFDWVHTIDS---LK 105 (229)
T ss_pred HHHHHHHHHcCCccc------c--EEcHHHHHHHHHHhcccC--CceEEEECCCcchHHHHHh-hhcCEEEEECC---HH
Confidence 667777888898864 2 122333334444555432 2344444422122222122 12455332222 34
Q ss_pred cHHHHHHHHHHcCCcEEE--EECCC-------CCHHHHHHhh------ccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 153 HLHRTLNQIKDLGAKAGV--VLNPA-------TSLSAIECVL------DVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 153 ~i~~~l~~ik~~G~k~Gl--ai~p~-------t~ie~~~~~l------~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
.+..+-+.+++.|..+.+ -++.+ ...+.+.+++ +.+.+..+|+-.+-.....-....++.+++++
T Consensus 106 ~~~~l~~~a~~~~~~~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~ 185 (229)
T TIGR00044 106 IAKKLNEQREKLQPPLNVLLQINISDEESKSGIQPEELLELAIQIEELKHLKLRGLMTIGAPTDSHEDQEENFRFMKLLF 185 (229)
T ss_pred HHHHHHHHHHhcCCCceEEEEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 455666666677765544 44441 0112222332 23567777776543332222335667777777
Q ss_pred HHhhhcCC--CCeEEEecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 218 RMCLEKGV--NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 218 ~l~~~~~~--~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+.+...+. ++ -.+..|-+.+ .....+.|++.+=+|++||.
T Consensus 186 ~~l~~~~~~~~~-~~lS~G~t~~-~~~a~~~g~tevR~G~~if~ 227 (229)
T TIGR00044 186 WQIKQDSPFGTI-DTLSMGMSDD-FEEAIAAGATMVRIGTAIFG 227 (229)
T ss_pred HHHHhhcCCCCC-CEEeeeCcHh-HHHHHHCCCCEEECChHHcC
Confidence 77766543 23 3578888875 44457799999999999996
No 410
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.10 E-value=2.7 Score=40.18 Aligned_cols=195 Identities=11% Similarity=0.112 Sum_probs=114.6
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeC-c--cccc--------------ccCCHHHHHHcCcCCCCCeeEEEE
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDG-R--FVPN--------------ITIGPLVVDALRPVTDLPLDVHLM 123 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG-~--fvpn--------------~~~G~~~I~~ir~~t~~~idaHLm 123 (281)
.|.+-+.++..+...++.+++.+...| +-+-.+ . |.+. ...-...++.+.+..+.|+-+||=
T Consensus 15 V~AfN~~n~e~~~Avi~aAee~~sPvI-lq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHLD 93 (340)
T cd00453 15 LPAVNCVGTDSINAVLETAAKVKAPVI-VQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTD 93 (340)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCEE-EEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 355555565566667788888777765 444442 1 1110 111222344444445789999986
Q ss_pred ecC--hhhHHHHHHHcC-----------CCEEEEccccccc----ccHHHHHHHHHHcCCcE----EEE--------EC-
Q 023494 124 IVE--PEQRVPDFIKAG-----------ADIVSVHCEQSST----IHLHRTLNQIKDLGAKA----GVV--------LN- 173 (281)
Q Consensus 124 v~d--p~~~i~~~~~aG-----------Ad~Itvh~Ea~~~----~~i~~~l~~ik~~G~k~----Gla--------i~- 173 (281)
=.. ...++..++++| .+.|-+=.-..+. ..-.++++.++..|+-+ |-. ..
T Consensus 94 H~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~ 173 (340)
T cd00453 94 HCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSH 173 (340)
T ss_pred CCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCccccc
Confidence 554 446899999999 5555544322111 12446777788888654 221 00
Q ss_pred -----CCCCHHHHHHhhc--c----CCEEEE--EeecCCCC-CCccchhHHHHHHHHHHHhhh-cCC---CCeEEEecCC
Q 023494 174 -----PATSLSAIECVLD--V----VDLVLI--MSVNPGFG-GQSFIESQVKKISDLRRMCLE-KGV---NPWIEVDGGV 235 (281)
Q Consensus 174 -----p~t~ie~~~~~l~--~----vD~Ilv--msV~pG~~-GQ~f~~~~l~kI~~lr~l~~~-~~~---~~~I~VDGGI 235 (281)
.-|..|...++.+ . +|.+.+ .++|--+. |.+ .-.+++|+++++.+.. +|+ ++++..=||=
T Consensus 174 ~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p--~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgS 251 (340)
T cd00453 174 MDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNV--VLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGS 251 (340)
T ss_pred ccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCC--ccCHHHHHHHHHHHHhhcccCCCCCceEEeCCC
Confidence 1355777777775 3 676543 44552222 221 1225667777776632 222 5678787764
Q ss_pred --ChhcHHHHHHcCCcEEEEccccc
Q 023494 236 --GPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 236 --~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
..+.++.+++.|+.-+=+++.+.
T Consensus 252 G~~~e~~~~ai~~Gi~KiNi~Te~~ 276 (340)
T cd00453 252 GSTAQEIKDSVSYGVVKMNIDTDTQ 276 (340)
T ss_pred CCCHHHHHHHHHcCCeEEEcccHHH
Confidence 47899999999999999998864
No 411
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=94.07 E-value=0.32 Score=45.54 Aligned_cols=198 Identities=14% Similarity=0.172 Sum_probs=108.3
Q ss_pred CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEE----------eeeCcccccccCCHHHHHHcCcCCCCCeeEEE
Q 023494 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVD----------VMDGRFVPNITIGPLVVDALRPVTDLPLDVHL 122 (281)
Q Consensus 53 ~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiD----------ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHL 122 (281)
+......+.|..+- -.. -+.++++|.+.+..- .-|+.+++ ++.-...+++|...+++|+.+|.
T Consensus 12 ~~~~~~l~~p~v~D-----a~S-Arl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~-~~e~~~~~~~I~~~~~lPv~aD~ 84 (294)
T TIGR02319 12 MNAPEILVVPSAYD-----ALS-AKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTS-VSEQAINAKNIVLAVDVPVIMDA 84 (294)
T ss_pred hcCCCcEEeecCcC-----HHH-HHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCC-HHHHHHHHHHHHhccCCCEEEEC
Confidence 34445666666652 222 245566777776542 23433332 22334556667777889999998
Q ss_pred Eec--Chh---hHHHHHHHcCCCEEEEccccc-------------ccccHHHHHHHHHHcCCcEEEEECCCC--------
Q 023494 123 MIV--EPE---QRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGAKAGVVLNPAT-------- 176 (281)
Q Consensus 123 mv~--dp~---~~i~~~~~aGAd~Itvh~Ea~-------------~~~~i~~~l~~ik~~G~k~Glai~p~t-------- 176 (281)
=.- ++. +.++.+.++|+-.|++---.. +.++..+-|+.+++.--..-+.|+-.|
T Consensus 85 dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~ 164 (294)
T TIGR02319 85 DAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGL 164 (294)
T ss_pred CCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCH
Confidence 772 332 458899999998888743210 112223334444443222223333222
Q ss_pred --CHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE-EEecCCCh-hcHHHHHHcCCcEE
Q 023494 177 --SLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI-EVDGGVGP-KNAYKVIEAGANAL 251 (281)
Q Consensus 177 --~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I-~VDGGI~~-e~i~~~~~aGAD~~ 251 (281)
-+++.+.|.+ .+|.|.+ ||. .+.+.++++.+.++. .+.. .+.||-++ -++.++.+.|++.+
T Consensus 165 deaI~Ra~aY~eAGAD~ifi----~~~-------~~~~ei~~~~~~~~~---P~~~nv~~~~~~p~~s~~eL~~lG~~~v 230 (294)
T TIGR02319 165 DEAIRRSREYVAAGADCIFL----EAM-------LDVEEMKRVRDEIDA---PLLANMVEGGKTPWLTTKELESIGYNLA 230 (294)
T ss_pred HHHHHHHHHHHHhCCCEEEe----cCC-------CCHHHHHHHHHhcCC---CeeEEEEecCCCCCCCHHHHHHcCCcEE
Confidence 2345555554 3898875 332 234455555555431 1211 34455543 58999999999999
Q ss_pred EEcccccCC--CCHHHHHHHHH
Q 023494 252 VAGSAVFGA--KDYAEAIKGIK 271 (281)
Q Consensus 252 VvGSaIf~a--~dp~~~~~~l~ 271 (281)
+.|...+.+ ....+.+..|+
T Consensus 231 ~~~~~~~~aa~~a~~~~~~~l~ 252 (294)
T TIGR02319 231 IYPLSGWMAAASVLRKLFTELR 252 (294)
T ss_pred EEcHHHHHHHHHHHHHHHHHHH
Confidence 999887653 22334444444
No 412
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.06 E-value=0.39 Score=38.60 Aligned_cols=90 Identities=22% Similarity=0.317 Sum_probs=66.3
Q ss_pred EEEECCCCCHHHHHHhhccCCEEEEEeecCCCC-CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC
Q 023494 169 GVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG 247 (281)
Q Consensus 169 Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~-GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG 247 (281)
||.+.++++++.+...+..++.|.+ ..|.|. |..| ..-+.||+ ..|+.-.|=+-|.+-.+.+..+..+|
T Consensus 1 gv~l~~d~~~~~l~~~L~~l~lI~i--~FP~F~DGRgf-----S~ArlLR~---r~gy~GelRA~Gdvl~DQl~~l~R~G 70 (110)
T PF06073_consen 1 GVWLAPDDDPEELADDLDRLPLIAI--DFPKFTDGRGF-----SQARLLRE---RYGYTGELRAVGDVLRDQLFYLRRCG 70 (110)
T ss_pred CeecCCCCCHHHHHhhccCCCEEEE--ECCCcCCchHh-----HHHHHHHH---HcCCCCcEEEeccchHHHHHHHHHcC
Confidence 6789999999999998888888865 378884 6554 22233343 34666789999999999999999999
Q ss_pred CcEEEEcccccCCCCHHHHHHHHHH
Q 023494 248 ANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 248 AD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
.|.+.+-. ..+++...+.+..
T Consensus 71 Fdsf~l~~----~~~~~~~~~~l~~ 91 (110)
T PF06073_consen 71 FDSFELRE----DQDPEDALAALSD 91 (110)
T ss_pred CCEEEeCC----CCCHHHHHHHHhh
Confidence 99987642 3456655555544
No 413
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=94.05 E-value=0.27 Score=44.01 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh-------h-------HHHHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE-------Q-------RVPDFIK 136 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~-------~-------~i~~~~~ 136 (281)
++++.++++.+.|++-+-++ -.|+ ...-+.+.. .+..+-+.+.=|. + -++.+.+
T Consensus 20 ~~~~~~~~a~~~~~~av~v~---p~~~------~~~~~~~~~---~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~ 87 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVT---PGYV------KPAAELLAG---SGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIR 87 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEE---GGGH------HHHHHHSTT---STSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCEEEEC---HHHH------HHHHHHhhc---cccccceEEEeCCCCCccccccccchHHHHHHHHH
Confidence 45667777788888887553 2222 223333322 2224444554331 2 2567889
Q ss_pred cCCCEEEEcccc---c------ccccHHHHHHHHHHcCCcEEEEECCCCCHH--------HHHHhh---c--cCCEEEEE
Q 023494 137 AGADIVSVHCEQ---S------STIHLHRTLNQIKDLGAKAGVVLNPATSLS--------AIECVL---D--VVDLVLIM 194 (281)
Q Consensus 137 aGAd~Itvh~Ea---~------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie--------~~~~~l---~--~vD~Ilvm 194 (281)
.|||-|-+...- . ..+++.++.+.++++|+++-+...+. +.+ .+.... . .+|+|=.
T Consensus 88 ~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~-~~~~~~~~~~~~I~~a~ria~e~GaD~vKt- 165 (236)
T PF01791_consen 88 LGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLR-GEEVADEKKPDLIARAARIAAELGADFVKT- 165 (236)
T ss_dssp TT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECEC-HHHBSSTTHHHHHHHHHHHHHHTT-SEEEE-
T ss_pred cCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecC-chhhcccccHHHHHHHHHHHHHhCCCEEEe-
Confidence 999988776432 0 12357777888888898887763332 222 122221 1 2788843
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcC--CCCeEEEecCCC-------hhcHHHHHHcCC--cEEEEcccccC
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKG--VNPWIEVDGGVG-------PKNAYKVIEAGA--NALVAGSAVFG 259 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~--~~~~I~VDGGI~-------~e~i~~~~~aGA--D~~VvGSaIf~ 259 (281)
..|++ ...+.+.++.+++...... -++.|-+.||++ .+.+.+++++|| -.+..|+.||+
T Consensus 166 -~tg~~-----~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 166 -STGKP-----VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp -E-SSS-----SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHHT
T ss_pred -cCCcc-----ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Confidence 23322 3344555666666665321 123489999993 445556679999 88999999886
No 414
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=94.04 E-value=0.84 Score=41.48 Aligned_cols=127 Identities=17% Similarity=0.320 Sum_probs=68.9
Q ss_pred ChhhHHHHHHHcCCCEEEEcccccccccHH-HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCC---
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLH-RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG--- 199 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~-~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG--- 199 (281)
||......+.++|||+||+|.-. +..|+. +-+..+++. ..+.-+-.+|..+. +.-.++ .+|.+.+..-.+.
T Consensus 23 dpv~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e~--~~ia~~~kP~~vtLVPE~r~e~T 99 (239)
T PF03740_consen 23 DPVEAARIAEEAGADGITVHLRE-DRRHIQDRDVRRLRELVKTPLNLEMAPTEEM--VDIALKVKPDQVTLVPEKREELT 99 (239)
T ss_dssp -HHHHHHHHHHTT-SEEEEEB-T-T-SSS-HHHHHHHHHH-SSEEEEEEESSHHH--HHHHHHH--SEEEEE--SGGGBS
T ss_pred CHHHHHHHHHHcCCCEEEeccCC-CcCcCCHHHHHHHHHHcccCEEeccCCCHHH--HHHHHhCCcCEEEECCCCCCCcC
Confidence 55666777889999999999764 223322 334444432 44566666654222 222222 4799988654332
Q ss_pred C-CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 200 F-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 200 ~-~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
. +|-.+.. -.++|+.+.+.+.+.|..+-+=+|.. ++.++...+.|||.+=+=+.=|
T Consensus 100 TegGldv~~-~~~~l~~~i~~L~~~gIrvSLFiDP~--~~qi~~A~~~Gad~VELhTG~y 156 (239)
T PF03740_consen 100 TEGGLDVAG-NRDRLKPVIKRLKDAGIRVSLFIDPD--PEQIEAAKELGADRVELHTGPY 156 (239)
T ss_dssp TTSSB-TCG-GHHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEEEEETHHH
T ss_pred CCcCChhhc-CHHHHHHHHHHHHhCCCEEEEEeCCC--HHHHHHHHHcCCCEEEEehhHh
Confidence 1 3433332 35677777777766654444556765 6789999999999987765544
No 415
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=94.02 E-value=1.3 Score=42.08 Aligned_cols=129 Identities=21% Similarity=0.305 Sum_probs=74.4
Q ss_pred HHHcCCCEEEEccccc--------c------------cc----cHHHHHHHHHHc-C--CcEEEEECCCCCH------HH
Q 023494 134 FIKAGADIVSVHCEQS--------S------------TI----HLHRTLNQIKDL-G--AKAGVVLNPATSL------SA 180 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~------------~~----~i~~~l~~ik~~-G--~k~Glai~p~t~i------e~ 180 (281)
+.+||.|+|-+|+... + .+ -+.++++.+|+. | ..+|+=+++.... ++
T Consensus 158 A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e 237 (341)
T PF00724_consen 158 AKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEE 237 (341)
T ss_dssp HHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHH
T ss_pred HHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHH
Confidence 4679999999996431 0 00 166888888875 4 3478878876542 22
Q ss_pred H---HHhhcc--CCEEEE------EeecCCCC-CCccch-hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc
Q 023494 181 I---ECVLDV--VDLVLI------MSVNPGFG-GQSFIE-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA 246 (281)
Q Consensus 181 ~---~~~l~~--vD~Ilv------msV~pG~~-GQ~f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a 246 (281)
. .++++. +|++.+ ....|... ...+.+ ..++-.+.+|+.. +.++.+.||++ ++.+.++++.
T Consensus 238 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~-----~~pvi~~G~i~~~~~ae~~l~~ 312 (341)
T PF00724_consen 238 TIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV-----KIPVIGVGGIRTPEQAEKALEE 312 (341)
T ss_dssp HHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH-----SSEEEEESSTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc-----CceEEEEeeecchhhhHHHHhc
Confidence 2 222222 455432 12223221 111111 2233445555554 35788899999 5557777776
Q ss_pred C-CcEEEEcccccCCCCHHHHH
Q 023494 247 G-ANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 247 G-AD~~VvGSaIf~a~dp~~~~ 267 (281)
| +|.+.+|+++...+|.-..+
T Consensus 313 g~~DlV~~gR~~ladPd~~~k~ 334 (341)
T PF00724_consen 313 GKADLVAMGRPLLADPDLPNKA 334 (341)
T ss_dssp TSTSEEEESHHHHH-TTHHHHH
T ss_pred CCceEeeccHHHHhCchHHHHH
Confidence 6 99999999998777765444
No 416
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=93.99 E-value=0.16 Score=50.23 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=76.6
Q ss_pred CccCHHHHHHHHHHc--CCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe-cChhhHHHHHHHcCCCEEEE
Q 023494 68 NFAKLGEQVKAVELA--GCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI-VEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 68 D~~~l~~~l~~l~~~--G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv-~dp~~~i~~~~~aGAd~Itv 144 (281)
.+.++.++++.+.+. |++.+. +.|..|..+...-.++.+.|++. ++.+.+..-. .+ .+.++.+.++|+..+.+
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~--f~Dd~f~~~~~~~~~l~~~l~~~-~i~~~~~~~~~~~-~e~l~~l~~aG~~~v~i 303 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFF--FDDDTFTDDKPRAEEIARKLGPL-GVTWSCNARANVD-YETLKVMKENGLRLLLV 303 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEE--EeCCCCCCCHHHHHHHHHHHhhc-CceEEEEecCCCC-HHHHHHHHHcCCCEEEE
Confidence 334666777777654 677654 46777665433333455555553 3334333221 23 34788899999999999
Q ss_pred ccccccc------------ccHHHHHHHHHHcCCcEEEE--EC-CCCCHHHHHHhhcc-----CCEEEE--EeecCCC
Q 023494 145 HCEQSST------------IHLHRTLNQIKDLGAKAGVV--LN-PATSLSAIECVLDV-----VDLVLI--MSVNPGF 200 (281)
Q Consensus 145 h~Ea~~~------------~~i~~~l~~ik~~G~k~Gla--i~-p~t~ie~~~~~l~~-----vD~Ilv--msV~pG~ 200 (281)
..|+.+. ++..+.++.++++|+.+... +. |+...+.+.+.++. +|.+.+ ++..||.
T Consensus 304 GiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l~P~PGT 381 (472)
T TIGR03471 304 GYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGT 381 (472)
T ss_pred cCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeecccCCCc
Confidence 9997521 23557788888999988643 33 56666555554332 455543 3345553
No 417
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=93.97 E-value=0.48 Score=44.18 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=78.2
Q ss_pred HHHHHcCcCCCCCeeEEEEe-cChhh---HHHHHHHcCCCEEEEcc----------------cccccccHHHHHHHHHHc
Q 023494 105 LVVDALRPVTDLPLDVHLMI-VEPEQ---RVPDFIKAGADIVSVHC----------------EQSSTIHLHRTLNQIKDL 164 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv-~dp~~---~i~~~~~aGAd~Itvh~----------------Ea~~~~~i~~~l~~ik~~ 164 (281)
..++.|...++.|+.+|.=. -||.. .++.+.++|+..|++-- ...+.++..+.++.+++.
T Consensus 68 ~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a 147 (285)
T TIGR02320 68 DVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA 147 (285)
T ss_pred HHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh
Confidence 44666666677885555444 56654 48889999999999911 111233445555565554
Q ss_pred --CCcEEEEEC-----CC----CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 165 --GAKAGVVLN-----PA----TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 165 --G~k~Glai~-----p~----t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
+-.+-|.-. .. .-+++.+.|.+. +|.|.+. + + +...+.++++.+.++..-.+.++.+-
T Consensus 148 ~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~----~--~----~~~~~ei~~~~~~~~~~~p~~pl~~~ 217 (285)
T TIGR02320 148 QTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH----S--R----KKDPDEILEFARRFRNHYPRTPLVIV 217 (285)
T ss_pred ccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec----C--C----CCCHHHHHHHHHHhhhhCCCCCEEEe
Confidence 333333211 11 123455555553 8998774 1 1 01223333443333211011233332
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+-+ .-++.++.+.|++.++.|...+.+
T Consensus 218 ~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 218 PTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred cCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 3322 236889999999999999887653
No 418
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=93.94 E-value=2.1 Score=42.90 Aligned_cols=185 Identities=16% Similarity=0.127 Sum_probs=104.9
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc----CCCEEEEccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA----GADIVSVHCE 147 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a----GAd~Itvh~E 147 (281)
.+..+.|.+.|+|+|++ |.+..+ .--.+.++.|++. .+..+-++... + .+-++...++ +.+.|++..-
T Consensus 26 ~~ia~~L~~~GV~~IEv----G~p~~s-~~d~e~v~~i~~~~~~~~i~al~r~-~-~~did~a~~al~~~~~~~v~i~~~ 98 (494)
T TIGR00973 26 LQIALALERLGVDIIEA----GFPVSS-PGDFEAVQRIARTVKNPRVCGLARC-V-EKDIDAAAEALKPAEKFRIHTFIA 98 (494)
T ss_pred HHHHHHHHHcCCCEEEE----ECCCCC-HHHHHHHHHHHHhCCCCEEEEEcCC-C-HHhHHHHHHhccccCCCEEEEEEc
Confidence 34556778889998887 422211 1113556666432 32334443221 2 2245555554 6677776543
Q ss_pred ccc--------------cccHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHhhcc-----CCEEEEEeecCCCCCCccc
Q 023494 148 QSS--------------TIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 148 a~~--------------~~~i~~~l~~ik~~G~k~Glai~p~--t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~ 206 (281)
..+ .+.+.+.++.+|++|..+.+...-. ++.+.+.++++. +|.|.+ |-.-|....
T Consensus 99 ~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l----~DTvG~~~P 174 (494)
T TIGR00973 99 TSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINI----PDTVGYALP 174 (494)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEe----CCCCCCCCH
Confidence 210 1224478888999998876654322 566666665543 566654 444454444
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEccccc------CCCCHHHHHHHHH
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVF------GAKDYAEAIKGIK 271 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf------~a~dp~~~~~~l~ 271 (281)
.+..+.++.+++.++.. .+.+|++ |-|.-..|.-..+++||+.+ =++++ ++.+.++.+..|+
T Consensus 175 ~~~~~~i~~l~~~~~~~-~~v~l~~H~HND~GlAvANalaAv~aGa~~v--d~tv~GlGERaGNa~le~vv~~L~ 246 (494)
T TIGR00973 175 AEYGNLIKGLRENVPNI-DKAILSVHCHNDLGLAVANSLAAVQNGARQV--ECTINGIGERAGNAALEEVVMALK 246 (494)
T ss_pred HHHHHHHHHHHHhhccc-cCceEEEEeCCCCChHHHHHHHHHHhCCCEE--EEEeecccccccCccHHHHHHHHH
Confidence 55567777777765421 1345766 88888888888999999965 23333 2345555555554
No 419
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.93 E-value=1.8 Score=35.77 Aligned_cols=104 Identities=19% Similarity=0.126 Sum_probs=60.9
Q ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCC-CCeEEEec
Q 023494 157 TLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDG 233 (281)
Q Consensus 157 ~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~-~~~I~VDG 233 (281)
+...++..|.++ +.+.+.+|.+.+.+.+. .+|+|.+-+... .-.+...+-+++++ +.+. +++|.+.|
T Consensus 23 v~~~lr~~G~eV-i~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~-----~~~~~~~~~~~~L~----~~~~~~~~i~vGG 92 (137)
T PRK02261 23 LDRALTEAGFEV-INLGVMTSQEEFIDAAIETDADAILVSSLYG-----HGEIDCRGLREKCI----EAGLGDILLYVGG 92 (137)
T ss_pred HHHHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEcCccc-----cCHHHHHHHHHHHH----hcCCCCCeEEEEC
Confidence 344566677665 45566678777666654 388887633321 11222222233333 3322 57788888
Q ss_pred CCC------hhcHHHHHHcCCcEEEEcccccC-CCCHHHHHHHHHHhcCc
Q 023494 234 GVG------PKNAYKVIEAGANALVAGSAVFG-AKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 234 GI~------~e~i~~~~~aGAD~~VvGSaIf~-a~dp~~~~~~l~~~~~~ 276 (281)
.+. .+..+.+.+.|+|.+ |. ..++++.+..+++.+++
T Consensus 93 ~~~~~~~~~~~~~~~l~~~G~~~v------f~~~~~~~~i~~~l~~~~~~ 136 (137)
T PRK02261 93 NLVVGKHDFEEVEKKFKEMGFDRV------FPPGTDPEEAIDDLKKDLNQ 136 (137)
T ss_pred CCCCCccChHHHHHHHHHcCCCEE------ECcCCCHHHHHHHHHHHhcc
Confidence 883 345568899997743 43 35777888888876654
No 420
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=93.91 E-value=0.35 Score=46.90 Aligned_cols=110 Identities=17% Similarity=0.259 Sum_probs=68.6
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCcc--chhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSF--IESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f--~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
+.++++++. +..+ .+..=...+..+...+. +|.|.+. -+ +|..+ .+.+++-|.++++... .+++|.+
T Consensus 235 ~di~~lr~~~~~pv--ivKgV~s~~dA~~a~~~Gvd~I~Vs-~h---GGr~~d~~~~t~~~L~~i~~a~~---~~~~vi~ 305 (381)
T PRK11197 235 KDLEWIRDFWDGPM--VIKGILDPEDARDAVRFGADGIVVS-NH---GGRQLDGVLSSARALPAIADAVK---GDITILA 305 (381)
T ss_pred HHHHHHHHhCCCCE--EEEecCCHHHHHHHHhCCCCEEEEC-CC---CCCCCCCcccHHHHHHHHHHHhc---CCCeEEe
Confidence 346677764 3333 22222566666666664 9999874 22 33222 2445666666665442 2478999
Q ss_pred ecCCC-hhcHHHHHHcCCcEEEEcccccCC------CCHHHHHHHHHHhc
Q 023494 232 DGGVG-PKNAYKVIEAGANALVAGSAVFGA------KDYAEAIKGIKTSK 274 (281)
Q Consensus 232 DGGI~-~e~i~~~~~aGAD~~VvGSaIf~a------~dp~~~~~~l~~~~ 274 (281)
||||. ...+-+.+..|||.+-+|+.+... +.....++.|++.+
T Consensus 306 dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El 355 (381)
T PRK11197 306 DSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEM 355 (381)
T ss_pred eCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99999 558888899999999999886521 23445555555543
No 421
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=93.91 E-value=0.57 Score=43.97 Aligned_cols=145 Identities=16% Similarity=0.210 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCccccc-------ccCCHHHHHHcCc-CCCCCeeEEEEecCh----------hhHHHHH
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPN-------ITIGPLVVDALRP-VTDLPLDVHLMIVEP----------EQRVPDF 134 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn-------~~~G~~~I~~ir~-~t~~~idaHLmv~dp----------~~~i~~~ 134 (281)
.++++.+.++|+++|++|--.-.+.+. ..+-...++.++. ..+..+.+|+--.|. ...++.+
T Consensus 158 ~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~~l 237 (332)
T cd03311 158 REEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAEYI 237 (332)
T ss_pred HHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccCcHHHHHHHH
Confidence 355567778999999998332111111 0112233344443 234566777765665 4456778
Q ss_pred HHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE-EECCCCC----HHHHHHhhcc-CCEEEE--EeecCCCCCCccc
Q 023494 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATS----LSAIECVLDV-VDLVLI--MSVNPGFGGQSFI 206 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl-ai~p~t~----ie~~~~~l~~-vD~Ilv--msV~pG~~GQ~f~ 206 (281)
.+.++|.+++-.......++ +.++... .|..+++ .+++.++ .+.+...+.. .+++-. +.+.|+.+=..+.
T Consensus 238 ~~~~vd~~~le~~~~~~~~~-~~l~~~~-~~k~l~~GvVd~~~~~~e~~e~v~~ri~~~~~~~~~~~l~lsp~CGl~~~~ 315 (332)
T cd03311 238 FELDVDVFFLEYDNSRAGGL-EPLKELP-YDKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLEQLWVSPDCGFATRE 315 (332)
T ss_pred HhCCCCEEEEEEcCCCCcch-HHHHhCC-CCCEEEeeeecCCCCCCCCHHHHHHHHHHHHhhCCHHHEEECCCCCCCcCC
Confidence 88999999988753101122 2233322 2566665 4444432 3333333222 222210 1235644322122
Q ss_pred -hhHHHHHHHHHHH
Q 023494 207 -ESQVKKISDLRRM 219 (281)
Q Consensus 207 -~~~l~kI~~lr~l 219 (281)
.....|++.+.+.
T Consensus 316 ~~~a~~kl~~~~~~ 329 (332)
T cd03311 316 RGNALTKLENMVKA 329 (332)
T ss_pred CchhHHHHHHHHHH
Confidence 3446667666654
No 422
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.90 E-value=0.7 Score=43.93 Aligned_cols=111 Identities=15% Similarity=0.245 Sum_probs=67.9
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCC-CHHHHHHhhcc---CCEEEEEeecCCCCCCcc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT-SLSAIECVLDV---VDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t-~ie~~~~~l~~---vD~IlvmsV~pG~~GQ~f 205 (281)
..+.+.+.|.-.+..-.. .+....+.+..+..++.+++++.... ..++..++++. +|+|.+=+.+ | .
T Consensus 53 LA~~a~~~G~~~~~~k~~---~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~----g--h 123 (326)
T PRK05458 53 IAEWLAENGYFYIMHRFD---PEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAH----G--H 123 (326)
T ss_pred HHHHHHHcCCEEEEecCC---HHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC----C--c
Confidence 344556777544443311 33444555555555777888876532 33667777663 3988774444 1 2
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
.....+-|+++|+..+. .++ +-|.|. .+.+..+.++|+|++.+|
T Consensus 124 ~~~~~e~I~~ir~~~p~----~~v-i~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 124 SDSVINMIQHIKKHLPE----TFV-IAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred hHHHHHHHHHHHhhCCC----CeE-EEEecCCHHHHHHHHHcCcCEEEEC
Confidence 23445557777776542 333 555455 899999999999999877
No 423
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.90 E-value=5 Score=36.80 Aligned_cols=170 Identities=13% Similarity=0.113 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCCeEEEEeeeCccccc-c-cCCHHHHHHcCcC---CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPN-I-TIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn-~-~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
+.-+.+.+.|+.++-=-.-|-..-|. + .+|.+-++.|++. .++++....+-.. .++.+.+ .+|++-+....
T Consensus 33 ~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~~---~v~~~~e-~vdilqIgs~~ 108 (250)
T PRK13397 33 LAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSER---QLEEAYD-YLDVIQVGARN 108 (250)
T ss_pred HHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCHH---HHHHHHh-cCCEEEECccc
Confidence 33455778888877554444332332 2 5566666666553 6777776444333 5566666 59999999774
Q ss_pred cccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-----C-CEEEEE-eecCCCCCCccc-hhHHHHHHHHHHHh
Q 023494 149 SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-----V-DLVLIM-SVNPGFGGQSFI-ESQVKKISDLRRMC 220 (281)
Q Consensus 149 ~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-----v-D~Ilvm-sV~pG~~GQ~f~-~~~l~kI~~lr~l~ 220 (281)
..+ ..+++++-+.|+-+.+.-.....++++...++. . ++++.. ++ -||.. ... .-.+.-|..+++..
T Consensus 109 --~~n-~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~-~~Y~~-~~~n~~dl~ai~~lk~~~ 183 (250)
T PRK13397 109 --MQN-FEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGV-RGYDV-ETRNMLDIMAVPIIQQKT 183 (250)
T ss_pred --ccC-HHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEcccc-CCCCC-ccccccCHHHHHHHHHHh
Confidence 233 468888888888777776634444333332222 2 444443 33 23321 111 12244455555543
Q ss_pred hhcCCCCeEEEe----cCCCh---hcHHHHHHcCCcEEEEcccc
Q 023494 221 LEKGVNPWIEVD----GGVGP---KNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 221 ~~~~~~~~I~VD----GGI~~---e~i~~~~~aGAD~~VvGSaI 257 (281)
+++|.+| +|.+. ......+.+|||.+++-.-.
T Consensus 184 -----~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 184 -----DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred -----CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 4688888 55532 34556688999988876433
No 424
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=93.85 E-value=1.1 Score=43.59 Aligned_cols=126 Identities=15% Similarity=0.208 Sum_probs=71.6
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe-cChhhHHHHHHHcC
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI-VEPEQRVPDFIKAG 138 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv-~dp~~~i~~~~~aG 138 (281)
|-.=++-.|..++. ++.+.+.|+|++-+ |+......-...++.+|+. +....++++- .+|...++.+ ..+
T Consensus 229 I~~DLK~~Di~~~v--v~~~a~aGAD~vTV-----H~ea~~~ti~~ai~~akk~-GikvgVD~lnp~tp~e~i~~l-~~~ 299 (391)
T PRK13307 229 IVADLKTLDTGNLE--ARMAADATADAVVI-----SGLAPISTIEKAIHEAQKT-GIYSILDMLNVEDPVKLLESL-KVK 299 (391)
T ss_pred EEEEecccChhhHH--HHHHHhcCCCEEEE-----eccCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCHHHHHHHh-hCC
Confidence 33444444444443 55666778877644 2221111112355555653 5555554443 4666666665 779
Q ss_pred CCEEEEcccc--cccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEE
Q 023494 139 ADIVSVHCEQ--SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIM 194 (281)
Q Consensus 139 Ad~Itvh~Ea--~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Ilvm 194 (281)
.|+|.+|... .......+-++.+|+.+..+-+.+.++-..+.+..+++ .+|++.+.
T Consensus 300 vD~Vllht~vdp~~~~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVG 358 (391)
T PRK13307 300 PDVVELHRGIDEEGTEHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVG 358 (391)
T ss_pred CCEEEEccccCCCcccchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 9999999521 01122345677788776565566666656667777765 48987664
No 425
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=93.82 E-value=1.9 Score=40.00 Aligned_cols=165 Identities=15% Similarity=0.055 Sum_probs=94.9
Q ss_pred HHHHHHHHcC-----CCeEEEEeeeCcccccccCCHHHHHHcCcC-C-CCCeeEEEEecChhhHHHHHHHcCCCEEEEcc
Q 023494 74 EQVKAVELAG-----CDWIHVDVMDGRFVPNITIGPLVVDALRPV-T-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 74 ~~l~~l~~~G-----~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t-~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~ 146 (281)
+.++.|.+.| ++.|++ +.|++ -..+.++++.+. . ...+.++ ...+.. -++.+.++|++.|.+..
T Consensus 25 ~i~~~L~~~G~~~~~v~~IE~----~s~~~---~d~~~v~~~~~~~~~~~~v~~~-~r~~~~-die~A~~~g~~~v~i~~ 95 (279)
T cd07947 25 KIYDYLHELGGGSGVIRQTEF----FLYTE---KDREAVEACLDRGYKFPEVTGW-IRANKE-DLKLVKEMGLKETGILM 95 (279)
T ss_pred HHHHHHHHcCCCCCccceEEe----cCcCh---HHHHHHHHHHHcCCCCCEEEEE-ecCCHH-HHHHHHHcCcCEEEEEE
Confidence 5567788899 888765 55544 223444444322 1 1235554 444543 46888999999998764
Q ss_pred ccc--------------ccccHHHHHHHHHHcCCcEEEEECCCCCH-------HHHHHhhc-----cCC-EEEEEeecCC
Q 023494 147 EQS--------------STIHLHRTLNQIKDLGAKAGVVLNPATSL-------SAIECVLD-----VVD-LVLIMSVNPG 199 (281)
Q Consensus 147 Ea~--------------~~~~i~~~l~~ik~~G~k~Glai~p~t~i-------e~~~~~l~-----~vD-~IlvmsV~pG 199 (281)
-++ ..+.+.+.++.+|+.|+++.+.+.-.++. +.+.++.+ .+| .|.+- =--|
T Consensus 96 s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~-DTvG 174 (279)
T cd07947 96 SVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLC-DTLG 174 (279)
T ss_pred cCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEec-cCCC
Confidence 321 01225567777889999888776433322 24555544 266 34331 1123
Q ss_pred CCCCcc-----chhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 200 FGGQSF-----IESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 200 ~~GQ~f-----~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
.. .++ ..++.+.++.+++..+ -.+.+|++ |-|....|.-..+++|++.|
T Consensus 175 ~a-~P~~~~~~p~~v~~l~~~l~~~~~--~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~v 232 (279)
T cd07947 175 YG-VPYPGASLPRSVPKIIYGLRKDCG--VPSENLEWHGHNDFYKAVANAVAAWLYGASWV 232 (279)
T ss_pred cC-CccccccchHHHHHHHHHHHHhcC--CCCceEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence 22 222 1334455666655421 01234555 88888889999999999976
No 426
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=93.79 E-value=0.3 Score=47.60 Aligned_cols=132 Identities=20% Similarity=0.298 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChh--hHHHHHHHcCCCEEEEccccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPE--QRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~--~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
+..++.+.++|+|.+-+|.-.|+- .|-.++|+.+|+. |.+ ..|--|.- .-.+.++++|||++-+..-..
T Consensus 253 K~rl~ll~~aGvdvviLDSSqGnS----~~qiemik~iK~~yP~l----~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsG 324 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVILDSSQGNS----IYQLEMIKYIKETYPDL----QIIAGNVVTKEQAANLIAAGADGLRVGMGSG 324 (503)
T ss_pred hHHHHHhhhcCCcEEEEecCCCcc----hhHHHHHHHHHhhCCCc----eeeccceeeHHHHHHHHHccCceeEeccccC
Confidence 345778889999999999888843 3677899999884 543 33444443 246678899999998876532
Q ss_pred ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 150 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+ ++- -++ +|.+ |. .|. ..++ ++.+.. +..++++
T Consensus 325 S---------------------iCi------Tqe---------vma~--Gr-pQ~--TAVy-~va~~A-----~q~gvpv 357 (503)
T KOG2550|consen 325 S---------------------ICI------TQK---------VMAC--GR-PQG--TAVY-KVAEFA-----NQFGVPC 357 (503)
T ss_pred c---------------------eee------ece---------eeec--cC-Ccc--cchh-hHHHHH-----HhcCCce
Confidence 1 000 001 2332 21 111 1122 122221 1235788
Q ss_pred EEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 230 EVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 230 ~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
..||||. ..++.+.+.+||+.+-.|+-+-.
T Consensus 358 iADGGiq~~Ghi~KAl~lGAstVMmG~lLAg 388 (503)
T KOG2550|consen 358 IADGGIQNVGHVVKALGLGASTVMMGGLLAG 388 (503)
T ss_pred eecCCcCccchhHhhhhcCchhheecceeee
Confidence 8999998 88999999999999999987764
No 427
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.78 E-value=1.1 Score=42.44 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=65.2
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHhhc-cCCEEEEEeecCCCCCCccch
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~-t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+...+.++|.=.+. |.+. +.+...+.++.+|+ ...++..+.+. ...+.++.+++ .+|+|.+ +... |.+ +
T Consensus 50 ma~ava~~GglGvi-~~~~-~~~~~~~~i~~vk~-~l~v~~~~~~~~~~~~~~~~l~eagv~~I~v---d~~~-G~~--~ 120 (325)
T cd00381 50 MAIAMARLGGIGVI-HRNM-SIEEQAEEVRKVKG-RLLVGAAVGTREDDKERAEALVEAGVDVIVI---DSAH-GHS--V 120 (325)
T ss_pred HHHHHHHCCCEEEE-eCCC-CHHHHHHHHHHhcc-CceEEEecCCChhHHHHHHHHHhcCCCEEEE---ECCC-CCc--H
Confidence 55567788865543 5443 23445555555552 23445555432 12355565555 4787765 2222 211 4
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvG 254 (281)
...+.|+++++..+ +++|.+....+.+.+..+.++|||.+++|
T Consensus 121 ~~~~~i~~ik~~~p----~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 121 YVIEMIKFIKKKYP----NVDVIAGNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHHHHHCC----CceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence 55666777776532 35665544445899999999999999984
No 428
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=93.77 E-value=0.28 Score=43.90 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=51.0
Q ss_pred CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHH--cCCcE
Q 023494 175 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE--AGANA 250 (281)
Q Consensus 175 ~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~--aGAD~ 250 (281)
..|++..+.|.+ .+|.+.+.-.+. ..|. +..++-|+++.+. .+++++|||+ .|.+..+.. .|||-
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~-~~~~---~~n~~~i~~i~~~-------~~v~vgGGirs~e~~~~~~~~l~~a~r 104 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDR-IVGL---GDNFSLLSKLSKR-------VELIADCGVRSPEDLETLPFTLEFASR 104 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEccc-ccCC---cchHHHHHHHHhh-------CcEEEcCccCCHHHHHHHHhhhccceE
Confidence 467777777754 378887765543 2232 2234455555543 3699999999 777877754 36999
Q ss_pred EEEcccccCCC
Q 023494 251 LVAGSAVFGAK 261 (281)
Q Consensus 251 ~VvGSaIf~a~ 261 (281)
+|+||.-++.+
T Consensus 105 vvigT~a~~~p 115 (221)
T TIGR00734 105 VVVATETLDIT 115 (221)
T ss_pred EeecChhhCCH
Confidence 99999988643
No 429
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=93.75 E-value=1.4 Score=40.33 Aligned_cols=95 Identities=25% Similarity=0.335 Sum_probs=53.1
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--cccccc-CCH--------HHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNIT-IGP--------LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~-~G~--------~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
+.....+..+.+.+.|+++| || |. .-|... ..+ ..++.+++.++.|+-+| +.+|. .++.+.+
T Consensus 21 ~~~~~~~~a~~~~~~GA~iI--DI--G~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiD--T~~~~-vi~~al~ 93 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADII--DV--GGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVD--TYRAE-VARAALE 93 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEE--EE--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe--CCCHH-HHHHHHH
Confidence 33445555666778899986 66 31 113211 111 23455555445554443 24444 5677888
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
+|+++|- +... .+..+.+..++++|..+.+.-.
T Consensus 94 ~G~~iIN-sis~---~~~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 94 AGADIIN-DVSG---GQDPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred cCCCEEE-ECCC---CCCchhHHHHHHcCCcEEEEeC
Confidence 8999763 2221 1134577778899988877543
No 430
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=93.66 E-value=0.75 Score=45.88 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhh--HHHHHHHcCCCEEEEccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQ--RVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~--~i~~~~~aGAd~Itvh~E 147 (281)
+..+-++.|.+.|+|.|-+|.-+||-. .=.+++++||+. ++.++.+ -|... -...+.++|||+|-+..-
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~----~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g 296 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQV----KMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVG 296 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcH----HHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCc
Confidence 555667888899999999999998632 234678888874 4555444 43332 356778999999985532
Q ss_pred cc-----------cccc---HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC
Q 023494 148 QS-----------STIH---LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 200 (281)
Q Consensus 148 a~-----------~~~~---i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~ 200 (281)
.. ...+ +.++.+.++++|+.+.-.=.-.++.+..+.+.-.+|.|++.+...|.
T Consensus 297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~ 363 (475)
T TIGR01303 297 PGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGT 363 (475)
T ss_pred CCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhccc
Confidence 11 0122 33455556777765544433346777777777779999887666665
No 431
>PRK05826 pyruvate kinase; Provisional
Probab=93.63 E-value=1 Score=44.86 Aligned_cols=140 Identities=14% Similarity=0.189 Sum_probs=86.4
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCC-cEEEE--ECCCCCHHHHHHhhccCCEEEEEeecCCCC-CCcc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVV--LNPATSLSAIECVLDVVDLVLIMSVNPGFG-GQSF 205 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~-k~Gla--i~p~t~ie~~~~~l~~vD~IlvmsV~pG~~-GQ~f 205 (281)
.++.+.+.|+|+|.+..-. +.+++.++.+.+.+.|. .+.+. |.....++.+++++..+|.|++-.-+-|.. |
T Consensus 178 ~i~~ald~g~d~I~~sfV~-saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrgDLg~elg--- 253 (465)
T PRK05826 178 DIKFAAEQGVDYIAVSFVR-SAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGDLGVEIP--- 253 (465)
T ss_pred HHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcchhhhhcC---
Confidence 5677889999999999665 36678888888887776 55554 444446688888888899998743333321 2
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEec----------CCChh---cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDG----------GVGPK---NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDG----------GI~~e---~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
.+....-.+++.+.+.++| .++.+.- ==+.. .+...+--|+|.+.+..-=-.-.-|.++++.|.+
T Consensus 254 ~~~v~~~qk~Ii~~c~~~g--Kpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~ 331 (465)
T PRK05826 254 DEEVPGLQKKIIRKAREAG--KPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMAR 331 (465)
T ss_pred cHhHHHHHHHHHHHHHHcC--CCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHH
Confidence 2333334444444444443 3444431 11111 3444566699999886333233568888887776
Q ss_pred hcC
Q 023494 273 SKR 275 (281)
Q Consensus 273 ~~~ 275 (281)
.+.
T Consensus 332 I~~ 334 (465)
T PRK05826 332 ICK 334 (465)
T ss_pred HHH
Confidence 543
No 432
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.60 E-value=1.9 Score=35.51 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhcCC-CCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 210 VKKISDLRRMCLEKGV-NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~-~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
.+.++++.+.+++++. ++++.+.|.+-.+...++.++|+|.++ ....++.+.++.+.+.+
T Consensus 67 ~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~-----~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIF-----GPGTPIPESAIFLLKKL 127 (132)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEE-----CCCCCHHHHHHHHHHHH
Confidence 3344455555544444 466766666777789999999998664 22357778888777654
No 433
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=93.60 E-value=1.1 Score=42.55 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=87.9
Q ss_pred HHcCCCeEEEEee-eCcccccc-cC----CHHHHHHcCcCCCCCeeEEEEec----ChhhHHHHHHH-cCCCEEEEcccc
Q 023494 80 ELAGCDWIHVDVM-DGRFVPNI-TI----GPLVVDALRPVTDLPLDVHLMIV----EPEQRVPDFIK-AGADIVSVHCEQ 148 (281)
Q Consensus 80 ~~~G~d~iHiDIm-DG~fvpn~-~~----G~~~I~~ir~~t~~~idaHLmv~----dp~~~i~~~~~-aGAd~Itvh~Ea 148 (281)
++.|+|+| ||- ++.. |+. .- -..+++.+.+.++.|+.+ +.+. ||.- ++...+ ++-.-..+...
T Consensus 86 ~~~GAd~I--dl~~~s~d-p~~~d~~~~e~~~~Vk~V~eavd~PL~I-d~s~n~~kD~ev-leaale~~~g~~pLInSa- 159 (319)
T PRK04452 86 EEYGADMI--TLHLISTD-PNGKDKSPEEAAKTVEEVLQAVDVPLII-GGSGNPEKDAEV-LEKVAEAAEGERCLLGSA- 159 (319)
T ss_pred HHhCCCEE--EEECCCCC-cccccchHHHHHHHHHHHHHhCCCCEEE-ecCCCCCCCHHH-HHHHHHHhCCCCCEEEEC-
Confidence 48899996 554 3322 432 11 124666666667788765 2343 5553 343333 33222333333
Q ss_pred cccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-----C--CEEEEEeecCCCC----CCccchhHHHHHHHHH
Q 023494 149 SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-----V--DLVLIMSVNPGFG----GQSFIESQVKKISDLR 217 (281)
Q Consensus 149 ~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-----v--D~IlvmsV~pG~~----GQ~f~~~~l~kI~~lr 217 (281)
+.++.++....++++|..++... |. +++.++++... + +-|.+ +|+.. |+...-..+++||++.
T Consensus 160 -t~en~~~i~~lA~~y~~~Vva~s-~~-Dln~ak~L~~~l~~~Gi~~edIvi---DP~~~~lg~g~e~~~~~~e~IR~aA 233 (319)
T PRK04452 160 -EEDNYKKIAAAAMAYGHAVIAWS-PL-DINLAKQLNILLTELGVPRERIVM---DPTTGALGYGIEYSYSVMERIRLAA 233 (319)
T ss_pred -CHHHHHHHHHHHHHhCCeEEEEc-HH-HHHHHHHHHHHHHHcCCCHHHEEE---eCCcccccCCHHHHHHHHHHHHHHH
Confidence 24568899999999998666543 22 35555554332 2 22322 77765 6665555566666554
Q ss_pred HHhhhcCCCCeEEEec--------------------------CCChh--cHHHHHHcCCcEEEEc
Q 023494 218 RMCLEKGVNPWIEVDG--------------------------GVGPK--NAYKVIEAGANALVAG 254 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDG--------------------------GI~~e--~i~~~~~aGAD~~VvG 254 (281)
=. ..+-+++++.-.= |+-.| +...++.+|+|++|+=
T Consensus 234 l~-~d~~l~~P~i~~~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~~~~ga~i~vm~ 297 (319)
T PRK04452 234 LK-GDEMLQMPMISGVGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTLLLAGADIFMMR 297 (319)
T ss_pred hc-CCCcCCCCeEecchhhhhhccccccccccccccccchhccHHHHHHHHHHHHHhcCcEEEEe
Confidence 32 4444556643211 22223 3445677899998863
No 434
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=93.59 E-value=2.4 Score=38.24 Aligned_cols=178 Identities=21% Similarity=0.224 Sum_probs=96.4
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc----CCCCCeeEEEEecChhhHHHHHHH-
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP----VTDLPLDVHLMIVEPEQRVPDFIK- 136 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~----~t~~~idaHLmv~dp~~~i~~~~~- 136 (281)
+.|++.--..-.++++.+.++|+.. ||..-++++.. .++ .+.-|+.=.=-.+-++..+.
T Consensus 24 v~LvaVsK~~~~~~i~~~~~~G~~~---------------fGENrvQe~~~K~~~l~~-~i~wHfIG~LQ~NK~k~i~~~ 87 (227)
T cd06822 24 PRLVAVSKTKPAELIKEAYDAGQRH---------------FGENYVQELIEKAPDLPI-DIKWHFIGHLQSNKVKKLLKV 87 (227)
T ss_pred cEEEEEECCCCHHHHHHHHHcCCcc---------------ccCcHHHHHHHHHHhccC-CceEEEECCCchhhHHHHhcc
Confidence 3566665556667788888888752 23333433321 121 24456543111123444433
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHc--CCcEE--EEECCCC-------CHHHHHHh---h----ccCCEEEEEeecC
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAG--VVLNPAT-------SLSAIECV---L----DVVDLVLIMSVNP 198 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~G--lai~p~t-------~ie~~~~~---l----~~vD~IlvmsV~p 198 (281)
.-+++| |.-+ +.....++-+.+.+. |..+. +-+|.+. +.+.+.++ + +.+.+.-+|+..|
T Consensus 88 ~~~~~i--hsvD-s~~la~~L~~~a~~~~~~~~~~VlIqVn~g~e~~K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~ 164 (227)
T cd06822 88 PNLYMV--ETVD-SEKLADKLNKAWEKLGEREPLKVMVQVNTSGEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGS 164 (227)
T ss_pred ccccEE--EecC-CHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCC
Confidence 135654 5443 234444444555555 65444 4455433 11333332 2 2356777888755
Q ss_pred CCCC-CccchhHHHHHHHHHHHhhhc-CCCC-eEEEecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 199 GFGG-QSFIESQVKKISDLRRMCLEK-GVNP-WIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 199 G~~G-Q~f~~~~l~kI~~lr~l~~~~-~~~~-~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
-... +.-....+++++++++.+.+. +... .-.+-.|.+.+ ....++.|++.+=+||+||+
T Consensus 165 ~~~~~~~~~r~~f~~l~~l~~~L~~~~g~~~~~~~lSmGmS~D-~~~Ai~~GsT~VRiGt~IFg 227 (227)
T cd06822 165 FGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMSAD-FEHAIEMGSTNVRVGSAIFG 227 (227)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEecccHh-HHHHHHcCCCEEeCCchhcC
Confidence 3222 122245677888888777654 3331 13578888875 55567899999999999995
No 435
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=93.52 E-value=1.1 Score=40.02 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=69.9
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCccc--ccccCCHHHHHHcCcC-CCCCeeEEEEecC--------h
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFV--PNITIGPLVVDALRPV-TDLPLDVHLMIVE--------P 127 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fv--pn~~~G~~~I~~ir~~-t~~~idaHLmv~d--------p 127 (281)
+|+.++..-+..+...+++.+ ..|+|.+++.+ |. |- .+...-....+.++.. +++|+.+++-... .
T Consensus 1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRl-D~-l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~ 77 (228)
T TIGR01093 1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRV-DL-LKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNE 77 (228)
T ss_pred CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEe-ch-hcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCH
Confidence 367777777777777777777 67899988852 32 10 0000001233333322 4689999988753 2
Q ss_pred hhHHHHH----HHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 128 EQRVPDF----IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 128 ~~~i~~~----~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
..|++.+ ...++|+|-+-... +.+...++++.+++.|.++-+..+
T Consensus 78 ~~~~~ll~~~~~~~~~d~vDiEl~~-~~~~~~~l~~~~~~~~~kvI~S~H 126 (228)
T TIGR01093 78 EEYLEELKRAADSPGPDFVDIELFL-PDDAVKELINIAKKGGTKIIMSYH 126 (228)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEccC-CHHHHHHHHHHHHHCCCEEEEecc
Confidence 3455443 34578999998764 234466777878889999988875
No 436
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=93.52 E-value=2.6 Score=38.44 Aligned_cols=172 Identities=18% Similarity=0.119 Sum_probs=100.4
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCC----HHHHHHcCcCC--CCCeeEEEEecChhh---HHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG----PLVVDALRPVT--DLPLDVHLMIVEPEQ---RVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G----~~~I~~ir~~t--~~~idaHLmv~dp~~---~i~~~~~ 136 (281)
..|+..+++.++.+.+.|++-+-+ -|+.--...+. .++++..++.. +.++.++.-..+..+ +.+.+.+
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~---~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVV---LGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE---CCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHH
Confidence 468888999999999999998643 23322223333 34444444432 478888887766553 4556778
Q ss_pred cCCCEEEEccccc---ccccHHHHHHHHHH-cCCcEEEEECCC-----CCHHHHHHhhccCCEEEEEeecCCCCCCccch
Q 023494 137 AGADIVSVHCEQS---STIHLHRTLNQIKD-LGAKAGVVLNPA-----TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 137 aGAd~Itvh~Ea~---~~~~i~~~l~~ik~-~G~k~Glai~p~-----t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+|+|.+.+..-.. +.+.+.+..+.+-+ .++.+.+=-+|. -+.+.+.++.+...++.+ |.-.
T Consensus 91 ~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~gi----------K~s~ 160 (281)
T cd00408 91 AGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGI----------KDSS 160 (281)
T ss_pred cCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEE----------EeCC
Confidence 9999999875321 12334444444444 356666655664 245667776653333322 1111
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
..+.++.++++..+ . .+.|=.|- .+.+......|++..+.|.+
T Consensus 161 ~d~~~~~~~~~~~~---~--~~~v~~G~-d~~~~~~l~~G~~G~i~~~~ 203 (281)
T cd00408 161 GDLDRLTRLIALLG---P--DFAVLSGD-DDLLLPALALGADGAISGAA 203 (281)
T ss_pred CCHHHHHHHHHhcC---C--CeEEEEcc-hHHHHHHHHcCCCEEEehHH
Confidence 23445555555432 1 24444454 45667778999999999954
No 437
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=93.42 E-value=3.2 Score=37.36 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=78.7
Q ss_pred CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-----cCC----------HHHHHHcCcCCCCC
Q 023494 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-----TIG----------PLVVDALRPVTDLP 117 (281)
Q Consensus 53 ~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-----~~G----------~~~I~~ir~~t~~~ 117 (281)
+++....+..+|...|+..+.+..+.+.+. .+.|++. =| .|+- ..| .++++.+|+ .+.|
T Consensus 68 ~~~~~~p~~vqi~g~~~~~~~~aa~~~~~~-~~~ielN--~g--CP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~p 141 (233)
T cd02911 68 LKDSNVLVGVNVRSSSLEPLLNAAALVAKN-AAILEIN--AH--CRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVP 141 (233)
T ss_pred hhccCCeEEEEecCCCHHHHHHHHHHHhhc-CCEEEEE--CC--CCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCC
Confidence 333345789999999999998888888774 5765443 22 1321 111 345667776 4778
Q ss_pred eeEEEEe---cChhhHHHHHHHcCCCEEEEcccccc-cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CCEEE
Q 023494 118 LDVHLMI---VEPEQRVPDFIKAGADIVSVHCEQSS-TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVL 192 (281)
Q Consensus 118 idaHLmv---~dp~~~i~~~~~aGAd~Itvh~Ea~~-~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD~Il 192 (281)
+-+-+-. .+...+.+.+.++|+|++|++.-... ..++ +.++.++ .++ ..+.-+-=+..+...+++.. +|.|.
T Consensus 142 VsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~-~~I~~i~-~~i-pVIgnGgI~s~eda~~~l~~GaD~Vm 218 (233)
T cd02911 142 VSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGNHADL-KKIRDIS-TEL-FIIGNNSVTTIESAKEMFSYGADMVS 218 (233)
T ss_pred EEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCCcH-HHHHHhc-CCC-EEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 7774433 24445667788999998877643210 1122 4444444 222 22333333677777777654 89887
Q ss_pred E
Q 023494 193 I 193 (281)
Q Consensus 193 v 193 (281)
+
T Consensus 219 i 219 (233)
T cd02911 219 V 219 (233)
T ss_pred E
Confidence 6
No 438
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=93.39 E-value=0.31 Score=43.06 Aligned_cols=155 Identities=20% Similarity=0.220 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHcCCCeEEEE--eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecC-hh-------------hHHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVD--VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVE-PE-------------QRVPDF 134 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiD--ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~d-p~-------------~~i~~~ 134 (281)
+++.+ ..++++|+|.|++= .-+|+.+|.+.| ++-++....+|+-+ |+.. .+ .-++.+
T Consensus 18 s~eSA-~nAe~GGAdRiElCSaL~eGGlTPSvG~----l~~~k~~~~iP~yc--MiRpR~GDFvYsd~Em~a~~~Dv~ll 90 (255)
T KOG4013|consen 18 SLESA-ENAEAGGADRIELCSALQEGGLTPSVGF----LSILKYKYPIPLYC--MIRPRAGDFVYSDDEMAANMEDVELL 90 (255)
T ss_pred hHHHH-HhHhhcCccHhHHhhhhccCCCCCcchh----hhhhhcccccceEE--EEecCCCCcccchHHHHHHHHHHHHH
Confidence 44443 45677899987763 557888886644 56566544477776 5521 11 135567
Q ss_pred HHcCCCEEEEcccccccccHH--HHHHHHHHc-CCcEE--EEECCCCCH-HHHHHhhccCCEEEEEeecCCC-----CCC
Q 023494 135 IKAGADIVSVHCEQSSTIHLH--RTLNQIKDL-GAKAG--VVLNPATSL-SAIECVLDVVDLVLIMSVNPGF-----GGQ 203 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~~~i~--~~l~~ik~~-G~k~G--lai~p~t~i-e~~~~~l~~vD~IlvmsV~pG~-----~GQ 203 (281)
.++|||+..|..-.. .-++. .+...+.-. +..+- -++....+. ..++..+. +-|| .|
T Consensus 91 k~~GAdGfVFGaLt~-dgsid~~~C~si~~~~rplPVTFHRAfD~~~D~k~~lE~~l~----------~lGF~rvLtSG- 158 (255)
T KOG4013|consen 91 KKAGADGFVFGALTS-DGSIDRTSCQSIIETARPLPVTFHRAFDVAYDWKTCLEDALL----------DLGFKRVLTSG- 158 (255)
T ss_pred HHcCCCceEEeecCC-CCCcCHHHHHHHHHhcCCCceeeeeehhhhcCHHHHHHHHHH----------HhhHHHHhhcC-
Confidence 889999999997652 22222 122222211 22221 133222111 12221111 2243 34
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHH
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE 245 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~ 245 (281)
+.|..++-+--+++++..+..++.+.-.+|||..|+..+++
T Consensus 159 -~~psAldGv~~i~~lie~hkg~i~VmpG~Gi~~sNl~~ile 199 (255)
T KOG4013|consen 159 -QEPSALDGVYIIRELIELHKGKIDVMPGCGINSSNLANILE 199 (255)
T ss_pred -CCcccccchHHHHHHHHHhcCCEEEecCCCcchHHHHHHHh
Confidence 45666666666666665554456677799999988887765
No 439
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=93.37 E-value=2.3 Score=39.68 Aligned_cols=191 Identities=15% Similarity=0.188 Sum_probs=116.2
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeC--cccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDG--RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG--~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
|..=+.|+..+.-.++.+++.+...| +.+--+ .|.+.-.+ ...++.+.+..+.|+-+||==......+..++++|.
T Consensus 20 ~AfN~~n~e~~~avi~AAe~~~sPvI-lq~~~~~~~~~~~~~~-~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~Gf 97 (287)
T PF01116_consen 20 PAFNVYNLETARAVIEAAEELNSPVI-LQISPSEVKYMGLEYL-AAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGF 97 (287)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTTS-EE-EEEEHHHHHHHHHHHH-HHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTS
T ss_pred EEEeeCCHHHHHHHHHHHHHhCCCEE-EEcchhhhhhhhHHHH-HHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCc
Confidence 33333455555566777788777764 332222 12211111 224555555567999999966555567889999999
Q ss_pred CEEEEcccccccc----cHHHHHHHHHHcCCcEEEEEC----------C-------CCCHHHHHHhhc--cCCEEEEE--
Q 023494 140 DIVSVHCEQSSTI----HLHRTLNQIKDLGAKAGVVLN----------P-------ATSLSAIECVLD--VVDLVLIM-- 194 (281)
Q Consensus 140 d~Itvh~Ea~~~~----~i~~~l~~ik~~G~k~Glai~----------p-------~t~ie~~~~~l~--~vD~Ilvm-- 194 (281)
+.|-+=.-..+.+ .-.++.+.++.+|+-+-.-|. . -|..+...++.+ .+|.+.+-
T Consensus 98 tSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiG 177 (287)
T PF01116_consen 98 TSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIG 177 (287)
T ss_dssp SEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SS
T ss_pred ccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecC
Confidence 9887765433221 245777888898876633221 1 156677777775 48987652
Q ss_pred eecCCCCCCccchh-HHHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 195 SVNPGFGGQSFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 195 sV~pG~~GQ~f~~~-~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
++| |...+...|. -+++|+++++.++ ++++..=||=+ .|.++++++.|+.-+=+|+.+..
T Consensus 178 t~H-G~y~~~~~p~Ld~~~L~~I~~~~~----~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~ 240 (287)
T PF01116_consen 178 TAH-GMYKGGKKPKLDFDRLKEIREAVP----DIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRR 240 (287)
T ss_dssp SBS-SSBSSSSSTC--HHHHHHHHHHHH----TSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHH
T ss_pred ccc-cccCCCCCcccCHHHHHHHHHhcC----CCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHH
Confidence 233 2211101333 3778888888873 37898888655 77999999999999999998763
No 440
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=93.36 E-value=4.8 Score=36.33 Aligned_cols=190 Identities=16% Similarity=0.225 Sum_probs=117.9
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc---
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--- 149 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~--- 149 (281)
++...++.+|+|-|-+- -=|.- -.-..-+..||+..+.++..-+-+.+ ++++.+.+...+.||+-.|..
T Consensus 26 ~aa~iA~~aGAdgITvH-----lReDrRHI~d~Dv~~lr~~~~~~~NlE~a~te--Eml~ia~~~kP~~vtLVPe~r~ev 98 (243)
T COG0854 26 EAAFIAEQAGADGITVH-----LREDRRHIQDRDVRILRALIDTRFNLEMAPTE--EMLAIALKTKPHQVTLVPEKREEV 98 (243)
T ss_pred HHHHHHHHcCCCceEec-----cCccccccchhhHHHHHHHcccceecccCchH--HHHHHHHhcCCCeEEeCCCchhhc
Confidence 44556777898875442 11211 12233456666665556554443333 357777889999999987742
Q ss_pred c----------cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHh-hccCCEEEEEeecCCCCCCccc-------hhHHH
Q 023494 150 S----------TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV-LDVVDLVLIMSVNPGFGGQSFI-------ESQVK 211 (281)
Q Consensus 150 ~----------~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~-l~~vD~IlvmsV~pG~~GQ~f~-------~~~l~ 211 (281)
+ .+-+.+.++.+++.|+++.+.+.|+ .+.++.- .-.+|+|-+.| |..+..+. ..-++
T Consensus 99 TTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD~d--~~qi~aa~~~gA~~IELhT---G~Ya~~~~~~~~~~~~~el~ 173 (243)
T COG0854 99 TTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFIDPD--PEQIEAAAEVGAPRIELHT---GPYADAHDAAEQARADAELE 173 (243)
T ss_pred ccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeCCC--HHHHHHHHHhCCCEEEEec---ccccccCChHHHHHHHHHHH
Confidence 0 1126788999999999999999875 2223332 22589997754 44433333 11355
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEEEEcccccCC---CCHHHHHHHHHHhcCcC
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVFGA---KDYAEAIKGIKTSKRPQ 277 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~VvGSaIf~a---~dp~~~~~~l~~~~~~~ 277 (281)
+|++..++-.+ .++.+...=|++..|++.+.+.- ..=+-+|-+|... --.++++.+|+..++.+
T Consensus 174 rl~~~a~~A~~--lGL~VnAGHgLty~Nv~~~a~~~~i~ElnIGH~iia~Av~~Gl~~aV~~m~~~~~~~ 241 (243)
T COG0854 174 RLAKAAKLAAE--LGLKVNAGHGLTYHNVKPLAAIPPLAELNIGHSIIARAVFVGLEEAVREMKRLMKRA 241 (243)
T ss_pred HHHHHHHHHHH--cCceEecCCCccccchHHHhcCCcceeecccHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 66665555443 45678888899999999886653 3335567666642 34567888888877654
No 441
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=93.23 E-value=2.3 Score=40.53 Aligned_cols=195 Identities=19% Similarity=0.200 Sum_probs=109.8
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcc-cccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc-
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRF-VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS- 149 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~f-vpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~- 149 (281)
+-++-+.+++.|+--+ ..+.-|.= -..+..=.++++.+++.++.++-+-+=..+ ....++++++|+|++.--.|+.
T Consensus 89 Ile~Ak~ak~~Ga~r~-c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~-~eq~~~L~~aGvd~ynhNLeTs~ 166 (335)
T COG0502 89 ILEAAKKAKAAGATRF-CMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGMLT-EEQAEKLADAGVDRYNHNLETSP 166 (335)
T ss_pred HHHHHHHHHHcCCceE-EEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCCCC-HHHHHHHHHcChhheecccccCH
Confidence 3344556677785332 22333321 011111233455555455555444333333 3467889999999987755542
Q ss_pred ----------ccccHHHHHHHHHHcCCcEE--EEECCCCCHHH-H---HHhhc--cCCEEEEEeecC--CCC--CCc-cc
Q 023494 150 ----------STIHLHRTLNQIKDLGAKAG--VVLNPATSLSA-I---ECVLD--VVDLVLIMSVNP--GFG--GQS-FI 206 (281)
Q Consensus 150 ----------~~~~i~~~l~~ik~~G~k~G--lai~p~t~ie~-~---~~~l~--~vD~IlvmsV~p--G~~--GQ~-f~ 206 (281)
+-++-..+++.+|+.|++++ ..+..+...++ + ..+.. .+|-|=++..+| |.- .++ ..
T Consensus 167 ~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~ 246 (335)
T COG0502 167 EFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLD 246 (335)
T ss_pred HHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCC
Confidence 12234578889999999874 45554544432 3 33322 278888877765 542 122 22
Q ss_pred h-hHHHHHHHHHHHhhhcCCCCeEEEecCCC---hhcHHHHHHcCCcEEEEcc-cccCC-CCHHHHHHHHHH
Q 023494 207 E-SQVKKISDLRRMCLEKGVNPWIEVDGGVG---PKNAYKVIEAGANALVAGS-AVFGA-KDYAEAIKGIKT 272 (281)
Q Consensus 207 ~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~---~e~i~~~~~aGAD~~VvGS-aIf~a-~dp~~~~~~l~~ 272 (281)
+ +.++-|.-.|=++++ ..|-+.||.. ++....+..+|||.+.+|- .++.. .+.++-.+-+++
T Consensus 247 ~~e~lk~IA~~Ri~~P~----~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~ 314 (335)
T COG0502 247 PFEFLKTIAVARIIMPK----SMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKD 314 (335)
T ss_pred HHHHHHHHHHHHHHCCc----ceeEccCCcccccHHHHHHHHHhccceeeecceEeecCCCCchhHHHHHHH
Confidence 2 235556666666654 4555667754 6667788999999999997 76643 444444444444
No 442
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=93.22 E-value=3.2 Score=38.64 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=50.3
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccccc---CC------HHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT---IG------PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~---~G------~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|+....+..+.+.+.|+|+| ||==-..-|... .- ..+|+.|++..+.++-+ =+.+|. .++.+.++|
T Consensus 36 ~~~~a~~~a~~~~~~GAdII--DIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISI--DT~~~~-va~~AL~~G 110 (282)
T PRK11613 36 SLIDAVKHANLMINAGATII--DVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISV--DTSKPE-VIRESAKAG 110 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEE--EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE--ECCCHH-HHHHHHHcC
Confidence 44444455556667899876 432111113221 11 12455666443455444 234544 677888999
Q ss_pred CCEEE-EcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 139 ADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 139 Ad~It-vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
||+|- +.... +. +.++.++++|..+.+.-+
T Consensus 111 adiINDI~g~~----d~-~~~~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 111 AHIINDIRSLS----EP-GALEAAAETGLPVCLMHM 141 (282)
T ss_pred CCEEEECCCCC----CH-HHHHHHHHcCCCEEEEcC
Confidence 99881 11211 11 345667888877776543
No 443
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=93.21 E-value=0.8 Score=44.24 Aligned_cols=96 Identities=13% Similarity=0.234 Sum_probs=62.9
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
+.++++|+. +..+.+ ..-...+..+...+ .+|.|.+ +-+ |-......+.+++-|.++++.+. .+++|.+||
T Consensus 214 ~di~wlr~~~~~Piiv--KgV~~~~dA~~a~~~Gvd~I~V-snh-GGrqld~~~~t~~~L~ei~~av~---~~~~vi~dG 286 (367)
T PLN02493 214 KDVQWLQTITKLPILV--KGVLTGEDARIAIQAGAAGIIV-SNH-GARQLDYVPATISALEEVVKATQ---GRIPVFLDG 286 (367)
T ss_pred HHHHHHHhccCCCEEe--ecCCCHHHHHHHHHcCCCEEEE-CCC-CCCCCCCchhHHHHHHHHHHHhC---CCCeEEEeC
Confidence 447777775 333332 22234566666555 4899876 223 22222345667777777766553 247899999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
||. -..+-+.+..|||.+-+|+.+.
T Consensus 287 GIr~G~Dv~KALALGA~aV~iGr~~l 312 (367)
T PLN02493 287 GVRRGTDVFKALALGASGIFIGRPVV 312 (367)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 999 4477788999999999998865
No 444
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=93.15 E-value=1.5 Score=42.92 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=60.1
Q ss_pred ceeeccccCCCCCccccccccchhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc
Q 023494 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (281)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp 98 (281)
++--.+-.+..|+ |..-+.|++....|-.+.++=.......+|-|- +|...+.+..+.+.+.|++.+.+|++
T Consensus 175 D~IKDDE~l~~q~-~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~------ 246 (412)
T TIGR03326 175 DLLKDDENLTSQP-FNRFEERVEKLYKVRDKVEAETGERKEYLANIT-APVREMERRAELVADLGGQYVMVDVV------ 246 (412)
T ss_pred ceeecCCCCCCCC-CccHHHHHHHHHHHHHHHHHHhCCcceEEEEec-CCHHHHHHHHHHHHHhCCCeEEEEee------
Confidence 4444444554333 333344556666655444443444556677776 66788888889999999999888743
Q ss_pred cccCCHHHHHHcCc---CCCCCeeEEE
Q 023494 99 NITIGPLVVDALRP---VTDLPLDVHL 122 (281)
Q Consensus 99 n~~~G~~~I~~ir~---~t~~~idaHL 122 (281)
..|...++.|++ ..+.++.+|=
T Consensus 247 --~~G~~~l~~l~~~~~~~~l~ih~Hr 271 (412)
T TIGR03326 247 --VCGWSALQYIRELTEDLGLAIHAHR 271 (412)
T ss_pred --ccchHHHHHHHHhhccCCeEEEEcC
Confidence 346778888876 3467777763
No 445
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=93.09 E-value=3.1 Score=39.76 Aligned_cols=130 Identities=10% Similarity=0.104 Sum_probs=78.2
Q ss_pred cChh----hHHHHHHHcCCCEEEEcccccc------------cccHHHHHHHHHHcCCc-EEEEEC---CCCCHHHHHHh
Q 023494 125 VEPE----QRVPDFIKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-AGVVLN---PATSLSAIECV 184 (281)
Q Consensus 125 ~dp~----~~i~~~~~aGAd~Itvh~Ea~~------------~~~i~~~l~~ik~~G~k-~Glai~---p~t~ie~~~~~ 184 (281)
.||. +.++.+.++|.+.|++..++.+ .+++.+.++.+++.|.. +.+.+. |+...+.+++-
T Consensus 96 ~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~t 175 (353)
T PRK05904 96 CNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEV 175 (353)
T ss_pred eccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHH
Confidence 4664 3578889999999999988641 12366788888999976 766543 55555555444
Q ss_pred hcc-----CCEEEEE--eecCCCC--CC--ccch-hHHHHHHHHHHHhhhcCCCC-eEE---E-ecCCChhcHHHHHHcC
Q 023494 185 LDV-----VDLVLIM--SVNPGFG--GQ--SFIE-SQVKKISDLRRMCLEKGVNP-WIE---V-DGGVGPKNAYKVIEAG 247 (281)
Q Consensus 185 l~~-----vD~Ilvm--sV~pG~~--GQ--~f~~-~~l~kI~~lr~l~~~~~~~~-~I~---V-DGGI~~e~i~~~~~aG 247 (281)
++. +|.|.+. +++||.. .+ .+.+ ...++...+++.+.+.|+.- .|. - .|--...|..- . .+
T Consensus 176 l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~~~~~~~~hn~~y-w-~~ 253 (353)
T PRK05904 176 FNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTNNFKYISKHNLAY-W-RT 253 (353)
T ss_pred HHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhcCCCCccccchHhH-h-CC
Confidence 332 6776554 5678842 21 2232 34667778888887766531 121 1 23333444433 2 46
Q ss_pred CcEEEEccc
Q 023494 248 ANALVAGSA 256 (281)
Q Consensus 248 AD~~VvGSa 256 (281)
.|.+=+|.+
T Consensus 254 ~~ylg~G~g 262 (353)
T PRK05904 254 KDWAAIGWG 262 (353)
T ss_pred CCEEEEcCC
Confidence 688877743
No 446
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=92.96 E-value=2.3 Score=46.95 Aligned_cols=183 Identities=15% Similarity=0.151 Sum_probs=108.0
Q ss_pred eEEEeccCccCHHHHHH---HHHHcCCCeEEEEeeeC-cccccc---cC-CHHHHHHcCcC-CCCCeeEEEEecC-----
Q 023494 61 SPSILSANFAKLGEQVK---AVELAGCDWIHVDVMDG-RFVPNI---TI-GPLVVDALRPV-TDLPLDVHLMIVE----- 126 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~---~l~~~G~d~iHiDImDG-~fvpn~---~~-G~~~I~~ir~~-t~~~idaHLmv~d----- 126 (281)
..|+++-=+ +..+.+. .+.+.-+.+..+.+-=| +|=-.+ .+ -.+-++.+|+. ++.++..-|-=.|
T Consensus 542 hQSl~atr~-rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~ 620 (1143)
T TIGR01235 542 HQSLLATRV-RTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYT 620 (1143)
T ss_pred hhhhhhhCC-CHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCcc
Confidence 468885433 4444443 33342234445554444 222122 22 23457777775 7777765443233
Q ss_pred --hh----hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCC-------C---CHHHHHHhhc----
Q 023494 127 --PE----QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-------T---SLSAIECVLD---- 186 (281)
Q Consensus 127 --p~----~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~-------t---~ie~~~~~l~---- 186 (281)
|. .|++.+++.|.|.+-+-..-...+++...++++|+.|..+..+|+-. . .++.+.++.+
T Consensus 621 ~ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~ 700 (1143)
T TIGR01235 621 NYPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEK 700 (1143)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHH
Confidence 33 35677788999988775332135678899999999999886655422 2 3444444332
Q ss_pred -cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 187 -VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 187 -~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
.+|.|.+ .-..|......+.+.++.+|+.+ +++|.+ |-|....|.-..+++|||++=+
T Consensus 701 ~Gad~I~i----kDt~Gll~P~~~~~Lv~~lk~~~-----~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ 763 (1143)
T TIGR01235 701 AGAHILGI----KDMAGLLKPAAAKLLIKALREKT-----DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDV 763 (1143)
T ss_pred cCCCEEEE----CCCcCCcCHHHHHHHHHHHHHhc-----CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEe
Confidence 2676654 23345433344456667776654 356776 6788888999999999998743
No 447
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=92.95 E-value=3.9 Score=37.65 Aligned_cols=157 Identities=14% Similarity=0.148 Sum_probs=88.6
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc----cCCHHHHHHcCcC-CCCC--eeEEEEecCh--hh-
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI----TIGPLVVDALRPV-TDLP--LDVHLMIVEP--EQ- 129 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~----~~G~~~I~~ir~~-t~~~--idaHLmv~dp--~~- 129 (281)
+---+|.-|. ...+..+...|+|+|.+++.=|.++-.. +-..++++.-|.. .+.. .|+|.+-.-| .+
T Consensus 82 ~GvnvL~nd~---~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~ 158 (257)
T TIGR00259 82 LGINVLRNDA---VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRD 158 (257)
T ss_pred eeeeeecCCC---HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCC
Confidence 3444444343 4567888889999999987666655433 1122333332221 3444 4444444334 11
Q ss_pred ---HHHHHHHc-CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCcc
Q 023494 130 ---RVPDFIKA-GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 130 ---~i~~~~~a-GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f 205 (281)
..+..... ++|.+++-........-.+.++.+|+.-...=+.+.-+-..+.+.++++.+|-+.+.|-.- ..|.-.
T Consensus 159 ~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~adGviVgS~~K-~~G~~~ 237 (257)
T TIGR00259 159 LESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAGSGVNLENVEELLSIADGVIVATTIK-KDGVFN 237 (257)
T ss_pred HHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhhCCEEEECCCcc-cCCccC
Confidence 22233333 4999999987532223345677777633333467777777788888888899998865432 233322
Q ss_pred chhHHHHHHHHHHHh
Q 023494 206 IESQVKKISDLRRMC 220 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~ 220 (281)
.+...+|++++-+..
T Consensus 238 n~~D~~rV~~Fm~~v 252 (257)
T TIGR00259 238 NFVDQARVSQFVEKV 252 (257)
T ss_pred CCcCHHHHHHHHHHH
Confidence 345566777665544
No 448
>PLN02858 fructose-bisphosphate aldolase
Probab=92.89 E-value=2.4 Score=47.60 Aligned_cols=191 Identities=17% Similarity=0.153 Sum_probs=116.3
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
|..=+.|+..+.-.++.+++.+...| +-+-.++ |.+ +.+..- ++.+.+....|+-+||==....+++..++++|.
T Consensus 1117 ~afn~~n~e~~~avi~aAe~~~sPvI-l~~~~~~~~~~~-~~~~~~-~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf 1193 (1378)
T PLN02858 1117 GAFNVYNLEGIEAVVAAAEAEKSPAI-LQVHPGALKQGG-IPLVSC-CIAAAEQASVPITVHFDHGTSKHELLEALELGF 1193 (1378)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCEE-EECCccHHhhcC-HHHHHH-HHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCC
Confidence 33333455455566778888887765 4444442 122 112222 222233356899999965544567889999998
Q ss_pred CEEEEccccccc----ccHHHHHHHHHHcCCcE----EEE--------EC----CCCCHHHHHHhhcc--CCEEEE--Ee
Q 023494 140 DIVSVHCEQSST----IHLHRTLNQIKDLGAKA----GVV--------LN----PATSLSAIECVLDV--VDLVLI--MS 195 (281)
Q Consensus 140 d~Itvh~Ea~~~----~~i~~~l~~ik~~G~k~----Gla--------i~----p~t~ie~~~~~l~~--vD~Ilv--ms 195 (281)
+.|-+=.-..+. ..-+++++.++.+|+-+ |-. .. .-|+.+..+++.+. +|.+.+ .+
T Consensus 1194 ~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt 1273 (1378)
T PLN02858 1194 DSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGN 1273 (1378)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeeccc
Confidence 877765433221 22457777888888654 211 00 13566778888774 888654 44
Q ss_pred ecCCCCCCccch-hHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEcccccC
Q 023494 196 VNPGFGGQSFIE-SQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 196 V~pG~~GQ~f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+| |..... .| --+++|+++++.+.. .++++..=|| +..+.++++++.|+.-|=+++.+..
T Consensus 1274 ~H-G~Y~~~-~p~l~~~~l~~i~~~~~~--~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi~T~~~~ 1336 (1378)
T PLN02858 1274 VH-GKYPAS-GPNLRLDLLKELRALSSK--KGVLLVLHGASGLPESLIKECIENGVRKFNVNTEVRT 1336 (1378)
T ss_pred cc-ccCCCC-CCccCHHHHHHHHHHhcC--CCCcEEEeCCCCCCHHHHHHHHHcCCeEEEeCHHHHH
Confidence 55 322110 12 236677777777632 2477877665 5588999999999999999998853
No 449
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=92.86 E-value=1.8 Score=39.33 Aligned_cols=127 Identities=17% Similarity=0.268 Sum_probs=73.8
Q ss_pred ChhhHHHHHHHcCCCEEEEcccccccccHH-HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC--
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLH-RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF-- 200 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~-~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~-- 200 (281)
||......+.++|||+||+|.-. +..|+. +-+..+++. ..+.-+-..|.. +.+.-.++ .+|.|.+..-.++-
T Consensus 22 d~v~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~l~~~~~~~lNlE~a~~~--emi~ia~~vkP~~vtLVPEkr~ElT 98 (237)
T TIGR00559 22 DPLRAALIAEQAGADGITVHLRE-DRRHIQDRDVYDLKEALTTPFNIEMAPTE--EMIRIAEEIKPEQVTLVPEARDEVT 98 (237)
T ss_pred CHHHHHHHHHHcCCCEEEecCCC-CcCcCCHHHHHHHHHHcCCCEEeccCCCH--HHHHHHHHcCCCEEEECCCCCCCcc
Confidence 44555667889999999999764 223322 333344432 345555555432 22222222 47999876544431
Q ss_pred --CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 201 --GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 201 --~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+|-.+ ....++|+.+.+.+.+.|..+-+=+|.- ++.++...+.|||.+=+=+.=|
T Consensus 99 TegGldv-~~~~~~l~~~i~~l~~~gI~VSLFiDP~--~~qi~~A~~~GAd~VELhTG~Y 155 (237)
T TIGR00559 99 TEGGLDV-ARLKDKLCELVKRFHAAGIEVSLFIDAD--KDQISAAAEVGADRIEIHTGPY 155 (237)
T ss_pred CCcCchh-hhCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEechhh
Confidence 23222 3335667776666666554333445654 7789999999999987765544
No 450
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=92.84 E-value=1.8 Score=40.43 Aligned_cols=183 Identities=19% Similarity=0.184 Sum_probs=95.0
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCccc-ccccCCHHHHHHcCcCCCCCeeEEEEec------------ChhhHHHH
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFV-PNITIGPLVVDALRPVTDLPLDVHLMIV------------EPEQRVPD 133 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fv-pn~~~G~~~I~~ir~~t~~~idaHLmv~------------dp~~~i~~ 133 (281)
.+..++.+.++.+.+.|++.+++ .+|... .+...-.++++.||+... .+.++-++. ...+.++.
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l--~gg~~~~~~~~~~~~i~~~Ik~~~~-~i~~~~~s~~e~~~~~~~~g~~~~e~l~~ 112 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCI--QGGLNPQLDIEYYEELFRAIKQEFP-DVHIHAFSPMEVYFLAKNEGLSIEEVLKR 112 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--ecCCCCCCCHHHHHHHHHHHHHHCC-CceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 45567777777777889988766 455321 122333567777776521 233332220 12456888
Q ss_pred HHHcCCCEEE-Eccccc-------------ccccHHHHHHHHHHcCCcEE--EEEC-CCCCHHHHHHh--hcc--CCEEE
Q 023494 134 FIKAGADIVS-VHCEQS-------------STIHLHRTLNQIKDLGAKAG--VVLN-PATSLSAIECV--LDV--VDLVL 192 (281)
Q Consensus 134 ~~~aGAd~It-vh~Ea~-------------~~~~i~~~l~~ik~~G~k~G--lai~-p~t~ie~~~~~--l~~--vD~Il 192 (281)
+.++|.+.+. ...|.. +.++..++++.+++.|+++. +.+. |.|.-+.++-+ +.. .++..
T Consensus 113 LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~ 192 (309)
T TIGR00423 113 LKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVENPEHRVEHLLRIRKIQEKTGG 192 (309)
T ss_pred HHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCCCHHHHHHHHHHHHhhchhhCC
Confidence 9999999885 343321 12234578889999999875 4454 34433333222 111 23221
Q ss_pred E-----EeecC-CC---CCC---cc-chhHHHHHHHHHHHhhhcCCCCe-EEEe-cCCChhcHHHHHHcCCcEEEEcccc
Q 023494 193 I-----MSVNP-GF---GGQ---SF-IESQVKKISDLRRMCLEKGVNPW-IEVD-GGVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 193 v-----msV~p-G~---~GQ---~f-~~~~l~kI~~lr~l~~~~~~~~~-I~VD-GGI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
+ +...| |. .++ .. ..+.+..|.-.|-+++ +++ |++- .-++++.....+.+|||.+ |+.+
T Consensus 193 f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp----~~~~i~a~~~~l~~~~~~~~l~~Gand~--~gt~ 266 (309)
T TIGR00423 193 FTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLN----NIRNIQASWVKLGLKLAQVALEFGANDL--GGTL 266 (309)
T ss_pred eeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcC----CCccceecchhcCHHHHHHHHhCCCccC--Cccc
Confidence 1 11112 22 122 11 1334555555565554 222 3320 1224555678899999965 4344
Q ss_pred c
Q 023494 258 F 258 (281)
Q Consensus 258 f 258 (281)
.
T Consensus 267 ~ 267 (309)
T TIGR00423 267 M 267 (309)
T ss_pred c
Confidence 3
No 451
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=92.83 E-value=1.8 Score=39.32 Aligned_cols=127 Identities=17% Similarity=0.268 Sum_probs=73.6
Q ss_pred ChhhHHHHHHHcCCCEEEEcccccccccHH-HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC--
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLH-RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF-- 200 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~-~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~-- 200 (281)
||.+....+.++|||+||+|.-. +..|+. +-+..+++. ..+.-+-..|.. +.+.-.++ .+|.|.+..-.+.-
T Consensus 25 d~v~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~~~--em~~ia~~~kP~~vtLVPE~r~E~T 101 (239)
T PRK05265 25 DPVRAALIAEQAGADGITVHLRE-DRRHIRDRDVRLLRETLKTELNLEMAATE--EMLDIALEVKPHQVTLVPEKREELT 101 (239)
T ss_pred CHHHHHHHHHHcCCCEEEecCCC-CcccCCHHHHHHHHHhcCCCEEeccCCCH--HHHHHHHHCCCCEEEECCCCCCCcc
Confidence 45556677889999999999763 222322 233333332 335555555432 22222222 47999876444321
Q ss_pred --CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 201 --GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 201 --~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+|-.+ ....++|+.+.+.+.+.|..+-+=+| =+++.+....+.|||.+=+=+.=|
T Consensus 102 TegGldv-~~~~~~l~~~i~~L~~~gIrVSLFid--P~~~qi~~A~~~GAd~VELhTG~y 158 (239)
T PRK05265 102 TEGGLDV-AGQFDKLKPAIARLKDAGIRVSLFID--PDPEQIEAAAEVGADRIELHTGPY 158 (239)
T ss_pred CCccchh-hcCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEechhh
Confidence 23222 33456677666666665543444466 457789999999999987765544
No 452
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.76 E-value=1 Score=41.99 Aligned_cols=119 Identities=20% Similarity=0.225 Sum_probs=68.0
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcc-----cc--c-------------ccCCHHHHHHcCcCC--CCCeeEEEEec------
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRF-----VP--N-------------ITIGPLVVDALRPVT--DLPLDVHLMIV------ 125 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~f-----vp--n-------------~~~G~~~I~~ir~~t--~~~idaHLmv~------ 125 (281)
++.+.+.++|.|.|+|-.-.|.. .| | ..|-.++++++|+.. +.++-+.+=..
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 44456678999998876544321 22 1 122367888998864 55666655432
Q ss_pred -Ch---hhHHHHHHHcCCCEEEEccccc--cc----------ccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhcc-
Q 023494 126 -EP---EQRVPDFIKAGADIVSVHCEQS--ST----------IHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV- 187 (281)
Q Consensus 126 -dp---~~~i~~~~~aGAd~Itvh~Ea~--~~----------~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~~- 187 (281)
++ .++++.+.++|+|+++++.-.. .. ..-.+.++.+++. ++.+ ++..--+..+.+++++..
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPV-i~~Ggi~t~~~a~~~l~~g 303 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPV-IAVGGIRDPEVAEEILAEG 303 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCE-EEeCCCCCHHHHHHHHHCC
Confidence 12 2346677889999999884321 00 1122455666664 3332 222222446667777664
Q ss_pred -CCEEEE
Q 023494 188 -VDLVLI 193 (281)
Q Consensus 188 -vD~Ilv 193 (281)
+|.|.+
T Consensus 304 ~aD~V~i 310 (327)
T cd02803 304 KADLVAL 310 (327)
T ss_pred CCCeeee
Confidence 898865
No 453
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=92.76 E-value=1.8 Score=39.16 Aligned_cols=127 Identities=20% Similarity=0.319 Sum_probs=73.6
Q ss_pred ChhhHHHHHHHcCCCEEEEcccccccccHH-HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC--
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLH-RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF-- 200 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~-~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~-- 200 (281)
||.+....+.++|||+||+|.-. +..|+. +-+..+++. ..+.-+-..|.. +.+.-.++ .+|.|.+..-.+.-
T Consensus 22 dpv~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~--em~~ia~~~kP~~vtLVPEkr~E~T 98 (234)
T cd00003 22 DPVEAALLAEKAGADGITVHLRE-DRRHIQDRDVRLLRELVRTELNLEMAPTE--EMLEIALEVKPHQVTLVPEKREELT 98 (234)
T ss_pred CHHHHHHHHHHcCCCEEEecCCC-CcCcCCHHHHHHHHHHcCCCEEeccCCCH--HHHHHHHHCCCCEEEECCCCCCCcc
Confidence 55566777889999999999763 223322 233333332 345555555432 22332233 47999875443321
Q ss_pred --CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 201 --GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 201 --~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+|-.+ ....++|+.+.+.+.+.|..+-+=+|.- ++.++...+.|||.+=+=+.=|
T Consensus 99 TegGldv-~~~~~~l~~~i~~l~~~gI~VSLFiDPd--~~qi~~A~~~GAd~VELhTG~Y 155 (234)
T cd00003 99 TEGGLDV-AGQAEKLKPIIERLKDAGIRVSLFIDPD--PEQIEAAKEVGADRVELHTGPY 155 (234)
T ss_pred CCccchh-hcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEechhh
Confidence 23222 3334666666666666554444445654 6789999999999987765544
No 454
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=92.75 E-value=2.2 Score=44.92 Aligned_cols=123 Identities=14% Similarity=0.170 Sum_probs=74.1
Q ss_pred HHHcCCCEEEEccc---------cc-----------c----cccHHHHHHHHHHc---CCcEEEEECCC------CCHHH
Q 023494 134 FIKAGADIVSVHCE---------QS-----------S----TIHLHRTLNQIKDL---GAKAGVVLNPA------TSLSA 180 (281)
Q Consensus 134 ~~~aGAd~Itvh~E---------a~-----------~----~~~i~~~l~~ik~~---G~k~Glai~p~------t~ie~ 180 (281)
+.++|+|+|-+|.- +. + ..-+.++++.+|+. ++.+++=+++. .+.++
T Consensus 560 a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~ 639 (765)
T PRK08255 560 AAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDD 639 (765)
T ss_pred HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHH
Confidence 46789999999965 21 0 01255888888874 35678777752 12332
Q ss_pred HHH---hhc--cCCEEEEEeecCCCCC-Cc--cch-hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-Cc
Q 023494 181 IEC---VLD--VVDLVLIMSVNPGFGG-QS--FIE-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-AN 249 (281)
Q Consensus 181 ~~~---~l~--~vD~IlvmsV~pG~~G-Q~--f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD 249 (281)
..+ .++ .+|+|-+-+ .+... +. +.+ ...+-.+++|+.. ++++.+-|+|+ ++.+.++++.| +|
T Consensus 640 ~~~~~~~l~~~g~d~i~vs~--g~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pv~~~G~i~~~~~a~~~l~~g~~D 712 (765)
T PRK08255 640 AVEIARAFKAAGADLIDVSS--GQVSKDEKPVYGRMYQTPFADRIRNEA-----GIATIAVGAISEADHVNSIIAAGRAD 712 (765)
T ss_pred HHHHHHHHHhcCCcEEEeCC--CCCCcCCCCCcCccccHHHHHHHHHHc-----CCEEEEeCCCCCHHHHHHHHHcCCcc
Confidence 222 233 278886632 11111 11 000 1122233444432 46888899996 88999999876 99
Q ss_pred EEEEcccccCCCCH
Q 023494 250 ALVAGSAVFGAKDY 263 (281)
Q Consensus 250 ~~VvGSaIf~a~dp 263 (281)
.+-+|+.+...++.
T Consensus 713 ~v~~gR~~l~dP~~ 726 (765)
T PRK08255 713 LCALARPHLADPAW 726 (765)
T ss_pred eeeEcHHHHhCccH
Confidence 99999999876654
No 455
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=92.63 E-value=3.1 Score=37.70 Aligned_cols=132 Identities=15% Similarity=0.063 Sum_probs=79.1
Q ss_pred ceEeEEEecc--CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHH----HHHcCcC-CCCCeeEEEEec-----
Q 023494 58 IIVSPSILSA--NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV----VDALRPV-TDLPLDVHLMIV----- 125 (281)
Q Consensus 58 ~~i~pSila~--D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~----I~~ir~~-t~~~idaHLmv~----- 125 (281)
.-+|.-|=-+ ++.....+....-..|+||+-+.+..+ .+.....+. ++.+|.. .+..+.+-++-.
T Consensus 53 ~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~---~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~ 129 (235)
T PF04476_consen 53 KPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGC---KDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVG 129 (235)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCC---CCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhc
Confidence 3466655332 233334333444457999999966543 222222332 3444543 345566666653
Q ss_pred --ChhhHHHHHHHcCCCEEEEcccc---------cccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEE
Q 023494 126 --EPEQRVPDFIKAGADIVSVHCEQ---------SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLI 193 (281)
Q Consensus 126 --dp~~~i~~~~~aGAd~Itvh~Ea---------~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Ilv 193 (281)
+|....+.+.++|++.+-+--.. .+.+++.++++.+|++|+.+|++=+- ..+.+..+.. .+||+-+
T Consensus 130 ~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGSL--~~~di~~L~~l~pD~lGf 207 (235)
T PF04476_consen 130 SISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMCALAGSL--RFEDIPRLKRLGPDILGF 207 (235)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchhhccccC--ChhHHHHHHhcCCCEEEe
Confidence 35556777899999998775321 13456889999999999999997432 3344444444 4799976
Q ss_pred E
Q 023494 194 M 194 (281)
Q Consensus 194 m 194 (281)
-
T Consensus 208 R 208 (235)
T PF04476_consen 208 R 208 (235)
T ss_pred c
Confidence 4
No 456
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.62 E-value=5.9 Score=34.93 Aligned_cols=121 Identities=13% Similarity=0.103 Sum_probs=71.5
Q ss_pred EEeccCc-cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCE
Q 023494 63 SILSANF-AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 63 Sila~D~-~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~ 141 (281)
.++--|. ...++.++.+.+.|+|.+|+- ++ ...+.++.+++. ++++.. .+.+ ...++.+.+.|+|+
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~g~d~v~l~--~~-------~~~~~~~~~~~~-~i~~i~--~v~~-~~~~~~~~~~gad~ 125 (236)
T cd04730 59 NLLVPSSNPDFEALLEVALEEGVPVVSFS--FG-------PPAEVVERLKAA-GIKVIP--TVTS-VEEARKAEAAGADA 125 (236)
T ss_pred eEecCCCCcCHHHHHHHHHhCCCCEEEEc--CC-------CCHHHHHHHHHc-CCEEEE--eCCC-HHHHHHHHHcCCCE
Confidence 3443343 467788899999999999872 11 236677777763 444432 3333 34566788899999
Q ss_pred EEEccccc-----cc-ccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeec
Q 023494 142 VSVHCEQS-----ST-IHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVN 197 (281)
Q Consensus 142 Itvh~Ea~-----~~-~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~ 197 (281)
+.++.-.. .. ....+.++.+++. ++.+. +..-=++.+.+.+++. .+|.|.+++-.
T Consensus 126 i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi-~~GGI~~~~~v~~~l~~GadgV~vgS~l 188 (236)
T cd04730 126 LVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVI-AAGGIADGRGIAAALALGADGVQMGTRF 188 (236)
T ss_pred EEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEE-EECCCCCHHHHHHHHHcCCcEEEEchhh
Confidence 99864210 00 1234577777764 33333 3322234455666554 48999886543
No 457
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.53 E-value=0.85 Score=44.03 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEee--cCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 152 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSV--NPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 152 ~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV--~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
+.+.+.++.+++.+..+-+-++|....+..+.+.+ .+|+|.+... ...+.+..-.+ ..+.++++. .+++
T Consensus 118 ~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~---~~i~~~ik~-----~~ip 189 (368)
T PRK08649 118 ELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEP---LNLKEFIYE-----LDVP 189 (368)
T ss_pred HHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCH---HHHHHHHHH-----CCCC
Confidence 44678888888876544444554444555555555 3899876421 11222211112 223333222 1467
Q ss_pred EEEecCCC-hhcHHHHHHcCCcEEEEcc
Q 023494 229 IEVDGGVG-PKNAYKVIEAGANALVAGS 255 (281)
Q Consensus 229 I~VDGGI~-~e~i~~~~~aGAD~~VvGS 255 (281)
|.+ |+|. .+.+..+.++|||.+.+|.
T Consensus 190 VIa-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 190 VIV-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred EEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 755 6665 8889999999999999994
No 458
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=92.51 E-value=4.3 Score=41.43 Aligned_cols=172 Identities=18% Similarity=0.149 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe--cChhhHHHHHHHc--CCC--EEEEccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--VEPEQRVPDFIKA--GAD--IVSVHCE 147 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv--~dp~~~i~~~~~a--GAd--~Itvh~E 147 (281)
+..+.|.+.|+|.|++ | |+.--.-..+.++++.+..-.+-++.+.+ .+-...++...++ |++ .|++-.-
T Consensus 52 ~ia~~L~~~Gvd~IE~----G-fp~~s~~D~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~~~~v~i~~~ 126 (564)
T TIGR00970 52 RYFDLLVRIGFKEIEV----G-FPSASQTDFDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAKRATVHFYNA 126 (564)
T ss_pred HHHHHHHHcCCCEEEE----e-CCCCCHHHHHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCCCCEEEEEEc
Confidence 4445777899998887 4 54321223344555533210112344444 3323346776666 554 5555432
Q ss_pred cc----------c----cccHHHHHHHHHHcCCc--------EEEEECCC----CCHHHHHHhhccC-CE-------EEE
Q 023494 148 QS----------S----TIHLHRTLNQIKDLGAK--------AGVVLNPA----TSLSAIECVLDVV-DL-------VLI 193 (281)
Q Consensus 148 a~----------~----~~~i~~~l~~ik~~G~k--------~Glai~p~----t~ie~~~~~l~~v-D~-------Ilv 193 (281)
++ + .+.+.+.++.+|++|.. .++-+.+. ++.+.+.+++..+ +. +..
T Consensus 127 ~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~ 206 (564)
T TIGR00970 127 TSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPII 206 (564)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeE
Confidence 21 0 11244556667777653 25667777 7777766665531 11 111
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
. .-|..-|..-..++.+.++.+++.++.. .+++|++ |-|.-..|.-..+++||+.|=
T Consensus 207 i-~l~DTvG~a~P~~~~~~i~~l~~~~~~~-~~~~l~vH~HND~GlAvANslaAv~aGa~~v~ 267 (564)
T TIGR00970 207 F-NLPATVEMTTPNVYADSIEYFSTNIAER-EKVCLSLHPHNDRGTAVAAAELGFLAGADRIE 267 (564)
T ss_pred E-EeccccCccCHHHHHHHHHHHHHhcCcc-cCceEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 1 1244445444445567777777665432 2355777 899998899889999999864
No 459
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=92.47 E-value=4.9 Score=36.87 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=79.6
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHhhc-cCCEEEE-EeecCCCC--CC
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV--LNPATSLSAIECVLD-VVDLVLI-MSVNPGFG--GQ 203 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla--i~p~t~ie~~~~~l~-~vD~Ilv-msV~pG~~--GQ 203 (281)
+++.+.++|.+.|-+..-. ..++..+.++.+.+.+.+..+. +.+ ..+.++..++ .+|.|-+ +++.+.+- .+
T Consensus 27 i~~~L~~~Gv~~IEvG~P~-~~~~~~~~~~~l~~~~~~~~v~~~~r~--~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~ 103 (262)
T cd07948 27 IAKALDAFGVDYIELTSPA-ASPQSRADCEAIAKLGLKAKILTHIRC--HMDDARIAVETGVDGVDLVFGTSPFLREASH 103 (262)
T ss_pred HHHHHHHcCCCEEEEECCC-CCHHHHHHHHHHHhCCCCCcEEEEecC--CHHHHHHHHHcCcCEEEEEEecCHHHHHHHh
Confidence 6677889999999884322 2344556667776666554442 333 3344555444 3776654 33333221 11
Q ss_pred -ccchhHHHHHHHHHHHhhhcCCCCeEEE--ecCCChhcH----HHHHHcCCcEEEEc--ccccCCCCHHHHHHHHHHh
Q 023494 204 -SFIESQVKKISDLRRMCLEKGVNPWIEV--DGGVGPKNA----YKVIEAGANALVAG--SAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 204 -~f~~~~l~kI~~lr~l~~~~~~~~~I~V--DGGI~~e~i----~~~~~aGAD~~VvG--SaIf~a~dp~~~~~~l~~~ 273 (281)
+-.++.++++.++.+...++|..+.+.+ ..+..++.+ +.+.++|+|.+.+. ..+....+..+.++.+++.
T Consensus 104 ~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 104 GKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh
Confidence 1235678888887777776665444332 455555544 56677899988776 2233333444555555554
No 460
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=92.44 E-value=0.32 Score=44.11 Aligned_cols=180 Identities=20% Similarity=0.278 Sum_probs=98.5
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEE---------eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe--c
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVD---------VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--V 125 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiD---------ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv--~ 125 (281)
.+.+.|-.+.+ . .-+.++++|.+.+..- .-|+.+++ ++.-...++.|...+++|+.+|+=. -
T Consensus 9 ~~l~~p~~~D~-----~-SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt-~~e~~~~~~~I~~~~~iPv~vD~d~GyG 81 (238)
T PF13714_consen 9 KPLVLPNVWDA-----L-SARLAERAGFDAIATSGAGVAASLGYPDGGLLT-LTEMLAAVRRIARAVSIPVIVDADTGYG 81 (238)
T ss_dssp SSEEEEEESSH-----H-HHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S--HHHHHHHHHHHHHHSSSEEEEE-TTTSS
T ss_pred CcEEeCCCcCH-----H-HHHHHHHcCCCEEEechHHHHHHcCCCCCCCCC-HHHHHHHHHHHHhhhcCcEEEEcccccC
Confidence 45666766522 1 1345667788876653 33544443 2333455667766688999999877 2
Q ss_pred C-hh---hHHHHHHHcCCCEEEEccc-cc-------ccccHHHHHHHHHHcCCcEEEEECCCCCH------------HHH
Q 023494 126 E-PE---QRVPDFIKAGADIVSVHCE-QS-------STIHLHRTLNQIKDLGAKAGVVLNPATSL------------SAI 181 (281)
Q Consensus 126 d-p~---~~i~~~~~aGAd~Itvh~E-a~-------~~~~i~~~l~~ik~~G~k~Glai~p~t~i------------e~~ 181 (281)
| |. +.++.+.++|+..|++-.- +. +.++..+-|+.+++.-...++.|+-.|+. ++.
T Consensus 82 ~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~ 161 (238)
T PF13714_consen 82 NDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERA 161 (238)
T ss_dssp SSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHH
Confidence 3 64 4588899999999887533 00 12223333333333222222444433333 344
Q ss_pred HHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 182 ECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 182 ~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+.|.+ .+|.|.+ ||. ...+.|+++.+.++ .++.+-.+=+.-++.++.+.|+..++.|...+.
T Consensus 162 ~aY~eAGAD~ifi----~~~-------~~~~~i~~~~~~~~-----~Pl~v~~~~~~~~~~eL~~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 162 KAYAEAGADMIFI----PGL-------QSEEEIERIVKAVD-----GPLNVNPGPGTLSAEELAELGVKRVSYGNSLLR 224 (238)
T ss_dssp HHHHHTT-SEEEE----TTS-------SSHHHHHHHHHHHS-----SEEEEETTSSSS-HHHHHHTTESEEEETSHHHH
T ss_pred HHHHHcCCCEEEe----CCC-------CCHHHHHHHHHhcC-----CCEEEEcCCCCCCHHHHHHCCCcEEEEcHHHHH
Confidence 44444 3898865 343 22334555555542 466665542236888999999999999988775
No 461
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=92.39 E-value=3.6 Score=39.63 Aligned_cols=177 Identities=14% Similarity=0.186 Sum_probs=98.5
Q ss_pred CHHHHHHHHHH----cCCCeEEEEeeeCcccccccCCH----HHHHHcCcCCCCCeeEEEEe-cChh----hHHHHHHHc
Q 023494 71 KLGEQVKAVEL----AGCDWIHVDVMDGRFVPNITIGP----LVVDALRPVTDLPLDVHLMI-VEPE----QRVPDFIKA 137 (281)
Q Consensus 71 ~l~~~l~~l~~----~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~t~~~idaHLmv-~dp~----~~i~~~~~a 137 (281)
.|.++++...+ ..++.|++ |+-+|++ +.+ ++++.|++..+..-++++-+ .+|. .+++.+.++
T Consensus 39 aL~~Ei~~~~~~~~~~~i~tiy~----GGGTPs~-l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~ 113 (380)
T PRK09057 39 AFLRELATEAARTGPRTLTSIFF----GGGTPSL-MQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAA 113 (380)
T ss_pred HHHHHHHHHHHHcCCCCcCeEEe----CCCcccc-CCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHc
Confidence 55666654332 13667776 4446753 333 34455555432222233322 4674 468888999
Q ss_pred CCCEEEEcccccc------------cccHHHHHHHHHHcCCcEEEEEC---CCCCHHHH----HHhhc-cCCEEEEE--e
Q 023494 138 GADIVSVHCEQSS------------TIHLHRTLNQIKDLGAKAGVVLN---PATSLSAI----ECVLD-VVDLVLIM--S 195 (281)
Q Consensus 138 GAd~Itvh~Ea~~------------~~~i~~~l~~ik~~G~k~Glai~---p~t~ie~~----~~~l~-~vD~Ilvm--s 195 (281)
|.+.+++..++.+ .+++.+.++.+++.+..+.+.+- |....+.+ ..++. .+|.|.+. +
T Consensus 114 GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~ 193 (380)
T PRK09057 114 GVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLT 193 (380)
T ss_pred CCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecce
Confidence 9999999988641 12355677778888888888654 44444332 22222 37877664 5
Q ss_pred ecCCCC------CCccc----hhHHHHHHHHHHHhhhcCCC-Ce---EEEecCCChhcHHHHHHcCCcEEEEc
Q 023494 196 VNPGFG------GQSFI----ESQVKKISDLRRMCLEKGVN-PW---IEVDGGVGPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 196 V~pG~~------GQ~f~----~~~l~kI~~lr~l~~~~~~~-~~---I~VDGGI~~e~i~~~~~aGAD~~VvG 254 (281)
+.||.. .+++. ....+..+.+++++.+.|+. +. .+-.|.....|..- . .+.|.+-+|
T Consensus 194 ~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ye~s~~a~~g~~~~hn~~y-w-~~~~~lG~G 264 (380)
T PRK09057 194 IEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAYEISNHARPGAESRHNLTY-W-RYGDYAGIG 264 (380)
T ss_pred ecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCchhhhHHHcCCCchhhhHHHH-h-CCCCEEEEc
Confidence 677731 11221 23345667777777766542 11 11245444444432 3 466888877
No 462
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=92.36 E-value=1.6 Score=38.86 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=44.9
Q ss_pred cCCCEEEEcc-ccccc-ccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEE
Q 023494 137 AGADIVSVHC-EQSST-IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 193 (281)
Q Consensus 137 aGAd~Itvh~-Ea~~~-~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilv 193 (281)
.+..+|||-+ |...- +-+.++++.+|+.|+.+.+..|-..+.+.++++++.+|.+++
T Consensus 37 ~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~ 95 (213)
T PRK10076 37 TSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLF 95 (213)
T ss_pred CCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEE
Confidence 3567888874 43211 125688999999999999999999999999999999998875
No 463
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=92.32 E-value=1.3 Score=42.83 Aligned_cols=110 Identities=16% Similarity=0.243 Sum_probs=66.5
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEe--ecCCC-CCCcc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMS--VNPGF-GGQSF 205 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Ilvms--V~pG~-~GQ~f 205 (281)
..+.+.+.+++.+ ..+-+.+.++++|+.+..+-+-++|....+..+.+.+ .+|.|.+.. +...+ .|..
T Consensus 104 aa~~~~e~~~~~~-------~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~- 175 (369)
T TIGR01304 104 ATRLLQELHAAPL-------KPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSG- 175 (369)
T ss_pred HHHHHHHcCCCcc-------ChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCC-
Confidence 3444556676663 1234678899999988665566665544555555555 389987752 22222 2211
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccc
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSa 256 (281)
. ...|.++++. .++++.+ |+|. .+.+..+.++|||.+++|+.
T Consensus 176 ~---p~~l~~~i~~-----~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~g 218 (369)
T TIGR01304 176 E---PLNLKEFIGE-----LDVPVIA-GGVNDYTTALHLMRTGAAGVIVGPG 218 (369)
T ss_pred C---HHHHHHHHHH-----CCCCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 1 2234444432 2467766 5555 88999999999999997743
No 464
>PRK14847 hypothetical protein; Provisional
Probab=92.31 E-value=6.1 Score=37.74 Aligned_cols=193 Identities=18% Similarity=0.112 Sum_probs=103.2
Q ss_pred hcccccc-CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC-CHHHHHHcCcCCCCCeeEEEE
Q 023494 46 ASARVDK-FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI-GPLVVDALRPVTDLPLDVHLM 123 (281)
Q Consensus 46 ~~~~~~~-~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~-G~~~I~~ir~~t~~~idaHLm 123 (281)
|-.|.|- +++++ =+|.+ +++...=.+..+.|.+.|+|.|++ | | |..+- -.+.++.|.+.-..|.++.+.
T Consensus 32 ~p~~~DTTLRDGe--Q~pGv-~fs~eeKl~IA~~L~~lGVd~IEv----G-~-Pa~s~~e~e~ir~I~~~~~~~~~~~i~ 102 (333)
T PRK14847 32 APIWMSTDLRDGN--QALIE-PMDGARKLRLFEQLVAVGLKEIEV----A-F-PSASQTDFDFVRKLIDERRIPDDVTIE 102 (333)
T ss_pred CCceecCCCCccC--CCCCC-CCCHHHHHHHHHHHHHcCCCEEEe----e-C-CCCCHHHHHHHHHHHHhCCCCCCcEEE
Confidence 4455554 55544 23332 222222223345677889998888 4 3 54422 234555554321123356666
Q ss_pred ecChh--hHHHHHHHcCC----CEEEEccccc----------c----cccHHHHHHHHHHcCC-----cEEEEECCC---
Q 023494 124 IVEPE--QRVPDFIKAGA----DIVSVHCEQS----------S----TIHLHRTLNQIKDLGA-----KAGVVLNPA--- 175 (281)
Q Consensus 124 v~dp~--~~i~~~~~aGA----d~Itvh~Ea~----------~----~~~i~~~l~~ik~~G~-----k~Glai~p~--- 175 (281)
+-... .-++...+++. ++|++-.-.+ + .+.+.+.++.+|++|. +.-+.+.+.
T Consensus 103 ~~~r~~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDas 182 (333)
T PRK14847 103 ALTQSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFS 182 (333)
T ss_pred EEecCcHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCC
Confidence 63322 23555666644 4566653221 0 1124566778888854 122333333
Q ss_pred -CCHHHHHHhhcc-----------CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhc
Q 023494 176 -TSLSAIECVLDV-----------VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKN 239 (281)
Q Consensus 176 -t~ie~~~~~l~~-----------vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~ 239 (281)
++.+.+.++... ++.|.+ |-.-|......+.+.|+.+++.+.. ..+++|++ |-|.-..|
T Consensus 183 Rad~dfL~~~~~~a~~~~ga~r~~a~~i~l----~DTVG~~~P~~~~~~i~~l~~~~~~-~~~v~i~~H~HnD~GlA~AN 257 (333)
T PRK14847 183 LAELDFAREVCDAVSAIWGPTPQRKMIINL----PATVESSTANVYADQIEWMHRSLAR-RDCIVLSVHPHNDRGTAVAA 257 (333)
T ss_pred CCCHHHHHHHHHHHHHHhCCCccCCcEEEe----CCccccCCHHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCchHHHH
Confidence 566666665442 233432 3334544434556778888765532 12356766 78888888
Q ss_pred HHHHHHcCCcEEE
Q 023494 240 AYKVIEAGANALV 252 (281)
Q Consensus 240 i~~~~~aGAD~~V 252 (281)
.-..+++||+.+=
T Consensus 258 slaA~~aGa~~i~ 270 (333)
T PRK14847 258 AELAVLAGAERIE 270 (333)
T ss_pred HHHHHHhCCCEEE
Confidence 8889999999864
No 465
>PRK07360 FO synthase subunit 2; Reviewed
Probab=92.30 E-value=3.1 Score=40.04 Aligned_cols=183 Identities=16% Similarity=0.146 Sum_probs=97.6
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCccccccc---CCHHHHHHcCcCCCCCeeEEEEecC--------------hhh
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT---IGPLVVDALRPVTDLPLDVHLMIVE--------------PEQ 129 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~---~G~~~I~~ir~~t~~~idaHLmv~d--------------p~~ 129 (281)
++...+.+.++.+.+.|+..+++ .-| .-|+.. +=.++++.||+.. + ++|+.... ..+
T Consensus 91 ls~eeI~~~a~~a~~~G~~~i~l--~~G-~~p~~~~~e~~~~~i~~ik~~~--~-~i~i~a~s~~ei~~~~~~~G~~~~e 164 (371)
T PRK07360 91 LTIAEILEKAAEAVKRGATEVCI--QGG-LHPAADSLEFYLEILEAIKEEF--P-DIHLHAFSPMEVYFAAREDGLSYEE 164 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEE--ccC-CCCCCCcHHHHHHHHHHHHHhC--C-CcceeeCCHHHHHHHHhhcCCCHHH
Confidence 34556667777888889998766 444 335443 2346677777632 1 33333211 124
Q ss_pred HHHHHHHcCCCEEEE--------------cccccccccHHHHHHHHHHcCCcE--EEEECCCCCH-HHHHHhh--c--cC
Q 023494 130 RVPDFIKAGADIVSV--------------HCEQSSTIHLHRTLNQIKDLGAKA--GVVLNPATSL-SAIECVL--D--VV 188 (281)
Q Consensus 130 ~i~~~~~aGAd~Itv--------------h~Ea~~~~~i~~~l~~ik~~G~k~--Glai~p~t~i-e~~~~~l--~--~v 188 (281)
.++.+.++|.|.+.- +..-.+.++..++++.+++.|+++ |+.+...... ++++.+. . ++
T Consensus 165 ~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~ 244 (371)
T PRK07360 165 VLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQQ 244 (371)
T ss_pred HHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhch
Confidence 578899999998841 111002235568888899999965 4555444444 3333322 1 13
Q ss_pred CEEEE---Eee---cCCCC--CCc------cchhHHHHHHHHHHHhhhcCCCCeEEEecCC---ChhcHHHHHHcCCcEE
Q 023494 189 DLVLI---MSV---NPGFG--GQS------FIESQVKKISDLRRMCLEKGVNPWIEVDGGV---GPKNAYKVIEAGANAL 251 (281)
Q Consensus 189 D~Ilv---msV---~pG~~--GQ~------f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI---~~e~i~~~~~aGAD~~ 251 (281)
+++-+ +.. ++|.- +.. -..+.++-|.-.|=+++.. .+-+-||- +.......+.+|||.+
T Consensus 245 ~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~----~~~i~a~~~~lg~~~~~~~l~~Gan~~ 320 (371)
T PRK07360 245 ETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNW----IKNIQASWVKLGLKLAQVALNCGANDL 320 (371)
T ss_pred hhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCC----CCCeeccceeeCHHHHHHHHhcCCccC
Confidence 44222 222 12321 111 1222244444445554431 12344452 2344456899999999
Q ss_pred ---EEcccccC
Q 023494 252 ---VAGSAVFG 259 (281)
Q Consensus 252 ---VvGSaIf~ 259 (281)
+.+..+..
T Consensus 321 ~~~~~~~~v~~ 331 (371)
T PRK07360 321 GGTLMEEHITK 331 (371)
T ss_pred cCcCcccceec
Confidence 77777776
No 466
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=92.29 E-value=11 Score=36.17 Aligned_cols=190 Identities=11% Similarity=0.081 Sum_probs=105.4
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCc--cccccc--------------CCHHHHHHcCcCCCCCeeEEEEecCh--
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNIT--------------IGPLVVDALRPVTDLPLDVHLMIVEP-- 127 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~--------------~G~~~I~~ir~~t~~~idaHLmv~dp-- 127 (281)
+.|+..+.-.++.+++.+...| +.+-.++ |....+ .-..+++.+.+..+.|+-+||==...
T Consensus 23 ~~n~e~~~avi~AAee~~sPvI-iq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~ 101 (345)
T cd00946 23 CTSSSTINAVLEAARDAKSPII-IQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDHCAKKL 101 (345)
T ss_pred eCCHHHHHHHHHHHHHhCCCEE-EECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcc
Confidence 3344455566777888887765 5554442 211111 11233444444457899999854332
Q ss_pred -----------hhHHHHHHHcCCCEEEEccccccc----ccHHHHHHHHHHcCCcE----EEE--------E------CC
Q 023494 128 -----------EQRVPDFIKAGADIVSVHCEQSST----IHLHRTLNQIKDLGAKA----GVV--------L------NP 174 (281)
Q Consensus 128 -----------~~~i~~~~~aGAd~Itvh~Ea~~~----~~i~~~l~~ik~~G~k~----Gla--------i------~p 174 (281)
..++..+.+.|.+.|-+=.-..+. ..-+++++.++..|+-+ |-. - ..
T Consensus 102 ~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~ 181 (345)
T cd00946 102 LPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAEL 181 (345)
T ss_pred chhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCccccccccccc
Confidence 223333445566666554332221 12446677778888654 221 0 01
Q ss_pred CCCHHHHHHhhc------cCCEEE--EEeecCCCC-C-CccchhHHHHHHHHHHHhhhc-----CCCCeEEEec--CCCh
Q 023494 175 ATSLSAIECVLD------VVDLVL--IMSVNPGFG-G-QSFIESQVKKISDLRRMCLEK-----GVNPWIEVDG--GVGP 237 (281)
Q Consensus 175 ~t~ie~~~~~l~------~vD~Il--vmsV~pG~~-G-Q~f~~~~l~kI~~lr~l~~~~-----~~~~~I~VDG--GI~~ 237 (281)
-|..+...++.+ .+|.+. +.++|--+. + .+.. +++|+++++.+.+. +.++++..=| |+..
T Consensus 182 yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~---~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~ 258 (345)
T cd00946 182 YTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQ---PEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTK 258 (345)
T ss_pred CCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccC---HHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCH
Confidence 367778888876 457654 445552222 2 2233 55555554432221 1246777766 4568
Q ss_pred hcHHHHHHcCCcEEEEcccccC
Q 023494 238 KNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 238 e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+.++++++.|+.-+=+++.+..
T Consensus 259 e~i~kai~~GI~KiNi~T~l~~ 280 (345)
T cd00946 259 EEIREAISYGVVKMNIDTDTQW 280 (345)
T ss_pred HHHHHHHHcCCeeEEeCcHHHH
Confidence 8999999999999999988754
No 467
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=92.26 E-value=0.88 Score=43.16 Aligned_cols=88 Identities=22% Similarity=0.292 Sum_probs=57.3
Q ss_pred HHHHHcCcCCCCCeeEEEEe--cChh-hHHHHHHHcCCCEEEEccc---ccccccHHHHHHHHHHcCCcEEEEECCCCCH
Q 023494 105 LVVDALRPVTDLPLDVHLMI--VEPE-QRVPDFIKAGADIVSVHCE---QSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv--~dp~-~~i~~~~~aGAd~Itvh~E---a~~~~~i~~~l~~ik~~G~k~Glai~p~t~i 178 (281)
+.++.+|+..+..+++||.+ ..+. .-++.+.+||-|=|-||.- ....+...+.+..++++|+.+|+-+ |..|-
T Consensus 98 ~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~dvG~Ei-Paipg 176 (353)
T COG2108 98 EYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMDVGVEI-PAIPG 176 (353)
T ss_pred HHHHHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhCccceeec-CCCcc
Confidence 44556666566779999999 3443 4678899999999999982 1112223455555669999999987 34454
Q ss_pred -H----HHHHhhcc--CCEEEE
Q 023494 179 -S----AIECVLDV--VDLVLI 193 (281)
Q Consensus 179 -e----~~~~~l~~--vD~Ilv 193 (281)
+ .+.++++. .|++.+
T Consensus 177 ~e~~i~e~~~~~~~~~~~FlNi 198 (353)
T COG2108 177 EEEAILEFAKALDENGLDFLNI 198 (353)
T ss_pred hHHHHHHHHHHHHhcccceeee
Confidence 2 23333432 466654
No 468
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=92.26 E-value=7.9 Score=37.18 Aligned_cols=186 Identities=13% Similarity=0.104 Sum_probs=111.3
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
|+..+.-.++.+++.+...| +-+-.++ |.+ ..+-..+++.+.+.. +.|+-+||==......+..++++|.+.|-+
T Consensus 27 n~e~~~avi~AAEe~~sPvI-lq~s~~~~~~~g-~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMi 104 (347)
T PRK13399 27 NMEQILAIMEAAEATDSPVI-LQASRGARKYAG-DAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFTSVMM 104 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEE-EECCcchhhhCC-HHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCCEEEE
Confidence 44445556677777777765 4444442 221 112223444444444 489999985544445788899999877766
Q ss_pred cccccc-----------cccHHHHHHHHHHcCCcEEEEE--------------------------CCCCCHHHHHHhhc-
Q 023494 145 HCEQSS-----------TIHLHRTLNQIKDLGAKAGVVL--------------------------NPATSLSAIECVLD- 186 (281)
Q Consensus 145 h~Ea~~-----------~~~i~~~l~~ik~~G~k~Glai--------------------------~p~t~ie~~~~~l~- 186 (281)
=.-..+ ...-.++++.++..|+-+=--| ..-|..+...++.+
T Consensus 105 DgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~ 184 (347)
T PRK13399 105 DGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQR 184 (347)
T ss_pred eCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHHHH
Confidence 543221 1123467777888886542111 01356677777776
Q ss_pred -cCCEEE--EEeecCCCCC-Cccch--hHHHHHHHHHHHhhhcCCCCeEEEecCCC-----------------------h
Q 023494 187 -VVDLVL--IMSVNPGFGG-QSFIE--SQVKKISDLRRMCLEKGVNPWIEVDGGVG-----------------------P 237 (281)
Q Consensus 187 -~vD~Il--vmsV~pG~~G-Q~f~~--~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-----------------------~ 237 (281)
.+|.+. +.++|--+.+ ++..+ --+++|+++++.++ ++++..=||=+ .
T Consensus 185 TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~----~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~ 260 (347)
T PRK13399 185 TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP----NTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPV 260 (347)
T ss_pred HCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC----CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCH
Confidence 488764 3445522222 11111 22677888777652 36787777665 5
Q ss_pred hcHHHHHHcCCcEEEEcccccC
Q 023494 238 KNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 238 e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
|.++++++.|+.-|=+++.+..
T Consensus 261 e~~~kai~~GI~KINi~Tdl~~ 282 (347)
T PRK13399 261 EEIQRGIKHGVRKVNIDTDIRL 282 (347)
T ss_pred HHHHHHHHCCCeEEEeChHHHH
Confidence 8899999999999999988753
No 469
>PRK04326 methionine synthase; Provisional
Probab=92.24 E-value=3.7 Score=38.51 Aligned_cols=89 Identities=20% Similarity=0.398 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCcC---CCCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
+.++++.+.+.|+++|++|- |.++..+. .++.+++. .+..+.+|+--.|....++.+.++|+|.+++
T Consensus 163 ~~~~i~~l~~~G~~~iqidE------P~l~~~~~~~~~~~~~l~~~~~~~~~~v~lH~C~G~~~~~~~~l~~~~vd~i~~ 236 (330)
T PRK04326 163 INEEIKNLVEAGAKYIQIDE------PALATHPEDVEIAVEALNRIVKGINAKLGLHVCYGDYSRIAPYILEFPVDQFDL 236 (330)
T ss_pred HHHHHHHHHHCCCCEEEecC------chhhcCHHHHHHHHHHHHHHHhCCCCEEEEEEeCCCcHHHHHHHHhCCCCEEEE
Confidence 44566778889999999982 33333332 22333332 2334556666566666688889999999998
Q ss_pred cccccccccHHHHHHHHHHc--CCcEEE
Q 023494 145 HCEQSSTIHLHRTLNQIKDL--GAKAGV 170 (281)
Q Consensus 145 h~Ea~~~~~i~~~l~~ik~~--G~k~Gl 170 (281)
-.-.. . .+.++.+++. |..+++
T Consensus 237 d~~~~-~---~~~l~~~~~~~~~~~l~~ 260 (330)
T PRK04326 237 EFANG-N---YKLLDLLKEYGFDKELGL 260 (330)
T ss_pred EeCCC-C---chhHHHhhccCCCCeEEe
Confidence 86431 1 1345566665 655554
No 470
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=92.19 E-value=0.51 Score=41.94 Aligned_cols=65 Identities=23% Similarity=0.390 Sum_probs=51.2
Q ss_pred HHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 76 VKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 76 l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
...++..|++|+|+.--+|-+ ..-.+++++++|+.++.|+.+=-=+.+++ .++.++++|||.|.+
T Consensus 140 a~aa~~~G~~~i~Le~~sGa~---~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e-~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGAS---YPVNPETISLVKKASGIPLIVGGGIRSPE-IAYEIVLAGADAIVT 204 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCCC---CCCCHHHHHHHHHhhCCCEEEeCCCCCHH-HHHHHHHcCCCEEEe
Confidence 345567899999998777742 22458999999998888888888888877 456678899999976
No 471
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.14 E-value=0.98 Score=45.13 Aligned_cols=123 Identities=21% Similarity=0.206 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhH--HHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQR--VPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~--i~~~~~aGAd~Itvh~Ea 148 (281)
+..+.++.+.+.|+|.|-+|.-+|| +. .=.++|++||+.. | ++.+|.-|...+ ...+.++|||.|-+..-.
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~---~~-~~~~~i~~ik~~~--p-~~~v~agnv~t~~~a~~l~~aGad~v~vgig~ 299 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGH---QE-KMLEALRAVRALD--P-GVPIVAGNVVTAEGTRDLVEAGADIVKVGVGP 299 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCc---cH-HHHHHHHHHHHHC--C-CCeEEeeccCCHHHHHHHHHcCCCEEEECccC
Confidence 4557778888999999999999996 11 1245677777642 1 455566454433 456789999999865332
Q ss_pred ----c-------cccc---HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC
Q 023494 149 ----S-------STIH---LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 200 (281)
Q Consensus 149 ----~-------~~~~---i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~ 200 (281)
. ..++ +.++.+.+++.|+.+.-.=.-.++-...+.+.-.+|.|++.+...|.
T Consensus 300 gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~ 365 (479)
T PRK07807 300 GAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGT 365 (479)
T ss_pred CcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccC
Confidence 0 0122 34455555567766555433445655555555568998887665554
No 472
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=92.11 E-value=8.5 Score=34.48 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=66.3
Q ss_pred HHHHHHcCCCEEEEccccc--c---cccHHHHHHHHHHc--CCcEEEEE-CCCCCHHHHHHhhc-----cCCEEEEEeec
Q 023494 131 VPDFIKAGADIVSVHCEQS--S---TIHLHRTLNQIKDL--GAKAGVVL-NPATSLSAIECVLD-----VVDLVLIMSVN 197 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~--~---~~~i~~~l~~ik~~--G~k~Glai-~p~t~ie~~~~~l~-----~vD~IlvmsV~ 197 (281)
.+.+.+.||+-+-+-..-. . .+.+.+.++.+++. ++.+=+.+ .+.-+.+.+....+ .+|+|- ..
T Consensus 80 ~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIK---Ts 156 (221)
T PRK00507 80 AKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVK---TS 156 (221)
T ss_pred HHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEE---cC
Confidence 4566788998776553311 1 12344455555553 43333333 22223344443322 378664 34
Q ss_pred CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 198 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 198 pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
.||. ....+++.++.+++... .++.|-+.|||+ .+++..++++||+-+
T Consensus 157 TG~~---~~gat~~~v~~m~~~~~---~~~~IKasGGIrt~~~a~~~i~aGA~ri 205 (221)
T PRK00507 157 TGFS---TGGATVEDVKLMRETVG---PRVGVKASGGIRTLEDALAMIEAGATRL 205 (221)
T ss_pred CCCC---CCCCCHHHHHHHHHHhC---CCceEEeeCCcCCHHHHHHHHHcCcceE
Confidence 5663 12256777777777764 347899999999 889999999999976
No 473
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=92.09 E-value=2.6 Score=43.71 Aligned_cols=137 Identities=15% Similarity=0.234 Sum_probs=80.0
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCC-------CH----HHHHHhhccCCE---
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPAT-------SL----SAIECVLDVVDL--- 190 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t-------~i----e~~~~~l~~vD~--- 190 (281)
.+++.++|++++.+. .|- .+.+.+.+=++.+.++|+.+.+-+.-.. .. +.+...++.++.
T Consensus 474 a~mLkd~G~~~viiGHSERR~~f~Etd~~V~~K~~~al~~GL~pIvCVGEtl~ere~g~t~~vv~~Ql~~~l~~v~~~~~ 553 (645)
T PRK13962 474 GPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQV 553 (645)
T ss_pred HHHHHHcCCCEEEECcccccCCcCcchHHHHHHHHHHHHCCCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHccCCHhHc
Confidence 678999999999885 221 0234455556888899999888775321 11 123333333321
Q ss_pred -EEEEeecCCC---CCCccchhHHH-HHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHH-HcCCcEEEEcccccC
Q 023494 191 -VLIMSVNPGF---GGQSFIESQVK-KISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVFG 259 (281)
Q Consensus 191 -IlvmsV~pG~---~GQ~f~~~~l~-kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~-~aGAD~~VvGSaIf~ 259 (281)
=++..=+|=+ +|+.-.|+..+ -.+.+|+.+.+. ..+++|.=.|.++++|+.++. ...+|++-+|++=.+
T Consensus 554 ~~ivIAYEPVWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diDG~LVGgASL~ 633 (645)
T PRK13962 554 KKVVIAYEPVWAIGTGKVATPEQAQEVHAFIRKLVAELYGEEAARKVRILYGGSVKSENAAGLFNQPDIDGGLVGGASLK 633 (645)
T ss_pred CcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhChhhhccceEEecCCCCHhHHHHHhcCCCCCeEEeehHhcC
Confidence 0122336633 25443344332 234445544321 124678889999999999875 455899999988776
Q ss_pred CCCHHHHH
Q 023494 260 AKDYAEAI 267 (281)
Q Consensus 260 a~dp~~~~ 267 (281)
.++..+.+
T Consensus 634 ~~~F~~Ii 641 (645)
T PRK13962 634 AQEFAAIA 641 (645)
T ss_pred HHHHHHHH
Confidence 55444333
No 474
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=92.06 E-value=1.5 Score=41.76 Aligned_cols=108 Identities=22% Similarity=0.340 Sum_probs=78.8
Q ss_pred eEeEEEeccCccCHH---HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHH
Q 023494 59 IVSPSILSANFAKLG---EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 59 ~i~pSila~D~~~l~---~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~ 135 (281)
+...|+..-|..+.+ +++++|+++|+|.+.+= ||+. ..-+.++.|++..+.|+.+|+--. .++.-.+.
T Consensus 22 I~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvt------v~~~-e~A~A~~~Ik~~~~vPLVaDiHf~--~rla~~~~ 92 (361)
T COG0821 22 IVVQSMTNTDTADVEATVAQIKALERAGCDIVRVT------VPDM-EAAEALKEIKQRLNVPLVADIHFD--YRLALEAA 92 (361)
T ss_pred eEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEe------cCCH-HHHHHHHHHHHhCCCCEEEEeecc--HHHHHHhh
Confidence 455777777666655 67788999999998763 4543 345677888887789998887766 44666778
Q ss_pred HcCCCEEEEccccc-ccccHHHHHHHHHHcCCcEEEEECCC
Q 023494 136 KAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPA 175 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~ 175 (281)
++|+|.+-+-.-.. ..+.+.++++.+|++|+-+=+-.|-.
T Consensus 93 ~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 93 ECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred hcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccC
Confidence 99999998875432 13458899999999998766666644
No 475
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=92.06 E-value=5.8 Score=38.88 Aligned_cols=124 Identities=25% Similarity=0.375 Sum_probs=66.1
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE-------------ECCCCCH-HHHHHhh---ccCCEEE
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-------------LNPATSL-SAIECVL---DVVDLVL 192 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla-------------i~p~t~i-e~~~~~l---~~vD~Il 192 (281)
.++.-++-|.|++|+|+-- ..+.++.+++.+...|++ -+-+.|+ +.+.+++ ..-|+.+
T Consensus 148 ~ie~qa~~GVDfmTiHcGi-----~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtl 222 (431)
T PRK13352 148 VIEKQAKDGVDFMTIHCGV-----TRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTL 222 (431)
T ss_pred HHHHHHHhCCCEEEEccch-----hHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeee
Confidence 3555577899999999863 356788888888777765 1233455 3333333 3346655
Q ss_pred EEe--ecCCCCCCccchhHHHH---HHHHHHHhhhcCCCCeEEEecCCChhcHHH------HHHcCCcEEEEccccc
Q 023494 193 IMS--VNPGFGGQSFIESQVKK---ISDLRRMCLEKGVNPWIEVDGGVGPKNAYK------VIEAGANALVAGSAVF 258 (281)
Q Consensus 193 vms--V~pG~~GQ~f~~~~l~k---I~~lr~l~~~~~~~~~I~VDGGI~~e~i~~------~~~aGAD~~VvGSaIf 258 (281)
=++ ..||.-........+.. +-+|.+...++|.+.-|+==|-+-.+.|.. =+-.||=.+|+|--.+
T Consensus 223 SLGDglRPG~i~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVEGPGHvPl~~I~~nv~l~K~lc~~APfYvLGPLvT 299 (431)
T PRK13352 223 SLGDGLRPGCIADATDRAQIQELITLGELVKRAREAGVQVMVEGPGHVPLDQIEANVKLQKRLCHGAPFYVLGPLVT 299 (431)
T ss_pred eccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHHhhCCCCceecCcccc
Confidence 432 35775332222222222 333333333444333343334454543331 1236788888885544
No 476
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=92.05 E-value=8.2 Score=37.49 Aligned_cols=124 Identities=23% Similarity=0.316 Sum_probs=68.0
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE-------------CCCCCH----HHHHHhhccCCEEE
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-------------NPATSL----SAIECVLDVVDLVL 192 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-------------~p~t~i----e~~~~~l~~vD~Il 192 (281)
.++.-++-|.|++|+|+-. ..+.+...++.|.-.|++= +.+.|+ +.+.++...-|+.+
T Consensus 146 ~v~~qa~~GVdfmTIHaGV-----~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~yDvtl 220 (432)
T COG0422 146 TVEKQAEQGVDFMTIHAGV-----LLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVTL 220 (432)
T ss_pred HHHHHHHhCCcEEEeehhh-----hHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHHhCeee
Confidence 4555677899999999863 3567888888887777751 223444 33333444457665
Q ss_pred EEe--ecCCCCCCccchhH---HHHHHHHHHHhhhcCCCCeEEEecCCChhcHH------HHHHcCCcEEEEccccc
Q 023494 193 IMS--VNPGFGGQSFIESQ---VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY------KVIEAGANALVAGSAVF 258 (281)
Q Consensus 193 vms--V~pG~~GQ~f~~~~---l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~------~~~~aGAD~~VvGSaIf 258 (281)
-++ ..||.-...-.... |..+-+|-+...++|.++-|+==|-|-.+.|+ +-...||=.+|+|--.+
T Consensus 221 SLGDglRPG~i~DA~D~aQ~~EL~tlgeL~krA~~~gVQvmvEGPGHvpl~~I~~nv~l~k~~c~~aPfYvLGPLvT 297 (432)
T COG0422 221 SLGDGLRPGCIADANDEAQFAELITLGELTKRAWEAGVQVMVEGPGHVPLNEIEANVKLQKELCDGAPFYVLGPLVT 297 (432)
T ss_pred eccCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHHHhcCCCCeeeeCCccc
Confidence 442 35775322211111 33344444444455444444444455554333 11345778888885444
No 477
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=92.02 E-value=1.9 Score=38.18 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=71.4
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc--cccCCHHHHHHcCcCCCCCeeEEEEec--------Chhh-
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP--NITIGPLVVDALRPVTDLPLDVHLMIV--------EPEQ- 129 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp--n~~~G~~~I~~ir~~t~~~idaHLmv~--------dp~~- 129 (281)
+.||..-|..++.++++.+...|+|++++.+ |. .+ +...-.+.++.||+.+++|+.+++-.. ++..
T Consensus 1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRl-D~--l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~ 77 (224)
T PF01487_consen 1 CVPLTGSTLEELLAELEEAESSGADAVELRL-DY--LENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEY 77 (224)
T ss_dssp EEEE--SSHHHHHHHHHHHHHTTTSEEEEEG-GG--STTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHH
T ss_pred CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEe-cc--ccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHH
Confidence 3467777777888888888877899999962 21 12 223345678888877789999998874 1223
Q ss_pred --HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 130 --RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 130 --~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
+++.+.+.|+|+|-+-... .++........++.|.++.+..+
T Consensus 78 ~~ll~~~~~~~~d~iDiE~~~--~~~~~~~~~~~~~~~~~iI~S~H 121 (224)
T PF01487_consen 78 LELLERAIRLGPDYIDIELDL--FPDDLKSRLAARKGGTKIILSYH 121 (224)
T ss_dssp HHHHHHHHHHTSSEEEEEGGC--CHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEccc--chhHHHHHHHHhhCCCeEEEEec
Confidence 3556788899999997763 22222235666788899998876
No 478
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=92.01 E-value=1.6 Score=41.18 Aligned_cols=119 Identities=11% Similarity=0.083 Sum_probs=74.8
Q ss_pred ChhhHHH---HHHHcCCCEEEEcccccc-----cccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhccCCEEEEE
Q 023494 126 EPEQRVP---DFIKAGADIVSVHCEQSS-----TIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVDLVLIM 194 (281)
Q Consensus 126 dp~~~i~---~~~~aGAd~Itvh~Ea~~-----~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~vD~Ilvm 194 (281)
+|..+++ .+.+.|.+.+-+|.-... .+...+.++++|+. +..+.+..|...+.+...++++.++-.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~--- 215 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEY--- 215 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCcc---
Confidence 4665544 456789999999865311 12234667777774 567888888888887777766543211
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
...+-.|++.+..++..+++++.. +++|..|..+. ++.+..+++.| +|++.+-
T Consensus 216 --~i~~iEqP~~~~~~~~~~~l~~~~-----~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 216 --DLFWFEEPVPPDDLEGLARLRQAT-----SVPIAAGENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred --CCCeEcCCCCccCHHHHHHHHHhC-----CCCEEeccccccHHHHHHHHHhCCCCEEecC
Confidence 111224566555555566665542 47888999885 78888887654 6766543
No 479
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=91.99 E-value=6.9 Score=36.79 Aligned_cols=184 Identities=13% Similarity=0.097 Sum_probs=90.5
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc------------------cCCHHHHHHcCcCCCCCeeEEEEecChh
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI------------------TIGPLVVDALRPVTDLPLDVHLMIVEPE 128 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~------------------~~G~~~I~~ir~~t~~~idaHLmv~dp~ 128 (281)
.+...+.++++.+.+.|+..+|+ .=|. -|.. .+-.+.++.+++.++....+++-..++.
T Consensus 35 l~~eeI~~~a~~~~~~G~~ei~l--~~G~-~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~g~lt~e 111 (322)
T TIGR03550 35 LSPEEVLEILRKGAAAGCTEALF--TFGE-KPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGLLPHTNPGVMSRD 111 (322)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--ecCC-CccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCCccccCCCCCCHH
Confidence 34445556666666777776654 2221 1222 2233445666544444444444444433
Q ss_pred hHHHHHHHcCCCEEEEcccccc----------------cccHHHHHHHHHHcCCcEE--EEECCCCCHHHHHHhhc---c
Q 023494 129 QRVPDFIKAGADIVSVHCEQSS----------------TIHLHRTLNQIKDLGAKAG--VVLNPATSLSAIECVLD---V 187 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~----------------~~~i~~~l~~ik~~G~k~G--lai~p~t~ie~~~~~l~---~ 187 (281)
.++.+.++|++. .+-.|+.+ ..+..++++.+++.|++++ +.+.+....+...+.+. .
T Consensus 112 -~l~~Lk~aG~~~-~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~ 189 (322)
T TIGR03550 112 -ELARLKPVNASM-GLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILIGIGETREERAESLLAIRE 189 (322)
T ss_pred -HHHHHHhhCCCC-CcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCCCccceeeEeCCCCHHHHHHHHHHHHH
Confidence 456778888753 33333210 1224577888888998764 45555544443333321 1
Q ss_pred -------CCEEEEEeecC--CCC--CCc-cc-hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcE----
Q 023494 188 -------VDLVLIMSVNP--GFG--GQS-FI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANA---- 250 (281)
Q Consensus 188 -------vD~IlvmsV~p--G~~--GQ~-f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~---- 250 (281)
++.+.++...| |.. +.+ .. .+.++.|.-.|=+++. . ..|.+---...+.....+.+|||-
T Consensus 190 Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~-~--~~I~~~~~l~~~~~~~~L~~Gand~~gt 266 (322)
T TIGR03550 190 LHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPP-D--ISIQVPPNLNREDYRLLLDAGIDDWGGV 266 (322)
T ss_pred HHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCC-C--CeeecCCccChHHHHHHHhcCCccccCc
Confidence 23344344434 432 211 11 2334444444544432 1 223333222222467789999998
Q ss_pred -EEEccccc
Q 023494 251 -LVAGSAVF 258 (281)
Q Consensus 251 -~VvGSaIf 258 (281)
.++|.++.
T Consensus 267 ~~~~~~~~~ 275 (322)
T TIGR03550 267 SPVTPDHVN 275 (322)
T ss_pred ccCchhhcC
Confidence 56666665
No 480
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=91.94 E-value=2.7 Score=40.58 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=102.9
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEee--eCccccc---ccCCHHHHHHcCcCCCC-CeeEEEEecChh---hHHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVM--DGRFVPN---ITIGPLVVDALRPVTDL-PLDVHLMIVEPE---QRVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDIm--DG~fvpn---~~~G~~~I~~ir~~t~~-~idaHLmv~dp~---~~i~~~~~ 136 (281)
.+|...+.+.+..+.++|+|.|-.|=. |..|.|. ...-.+.++...+.|+. ++.+--.+.+.. +..+.+.+
T Consensus 142 gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~ 221 (367)
T cd08205 142 GLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVE 221 (367)
T ss_pred CCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHH
Confidence 578889999999999999998755411 2222221 12223333333333442 333322223333 34455678
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCC------------CHHHHHHhhc--cCCEEEEEeecCCCCC
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT------------SLSAIECVLD--VVDLVLIMSVNPGFGG 202 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t------------~ie~~~~~l~--~vD~IlvmsV~pG~~G 202 (281)
+|||.+-+-.-.. - ...++.+++.- .+-+.-++.. +.-.+.++.. .+|.+++ |+..|
T Consensus 222 ~Gad~vmv~~~~~-g---~~~~~~l~~~~-~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~----~~~~g 292 (367)
T cd08205 222 AGANALLINPNLV-G---LDALRALAEDP-DLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIF----PGPGG 292 (367)
T ss_pred cCCCEEEEecccc-c---ccHHHHHHhcC-CCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCcccc----CCCcc
Confidence 9999987775431 1 11233333322 2222223322 1223344433 3787754 33344
Q ss_pred -CccchhHHHHHHHH-HHHhhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEE-cccccCCC-CHHHHHHHHHH
Q 023494 203 -QSFIESQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVA-GSAVFGAK-DYAEAIKGIKT 272 (281)
Q Consensus 203 -Q~f~~~~l~kI~~l-r~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~Vv-GSaIf~a~-dp~~~~~~l~~ 272 (281)
-.+.++.+.++.+. +.-+..-...++ ...||+++.+++.+++. |.|+++. |..|+..+ .+++-++.+++
T Consensus 293 k~~~~~~~~~~la~~~~~~~~~iK~~~P-v~sgG~~~~~v~~l~~~~G~dv~~~~GGgi~gHp~g~~ag~~a~r~ 366 (367)
T cd08205 293 RFPFSREECLAIARACRRPLGGIKPALP-VPSGGMHPGRVPELYRDYGPDVILLAGGGILGHPDGAAAGVRAFRQ 366 (367)
T ss_pred CcCCCHHHHHHHHHHHhCccccCCCcee-eccCCCCHHHHHHHHHHhCCcEEEEcCchhcCCCCChHHHHHHHhc
Confidence 22445555554431 111110001122 35889999999977655 8886654 57899885 67777777764
No 481
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=91.93 E-value=3.4 Score=32.34 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 154 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 154 i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
+.-+...+++.|.++-+. ..+.+.+.+.+.+. .+|+|.+- +. + . ..++...++.+.+++.+.+.++.+
T Consensus 17 l~~la~~l~~~G~~v~~~-d~~~~~~~l~~~~~~~~pd~V~iS-~~--~-~-----~~~~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDIL-DANVPPEELVEALRAERPDVVGIS-VS--M-T-----PNLPEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHHHHHHHTTBEEEEE-ESSB-HHHHHHHHHHTTCSEEEEE-ES--S-S-----THHHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHCCCeEEEE-CCCCCHHHHHHHHhcCCCcEEEEE-cc--C-c-----CcHHHHHHHHHHHHhcCCCCEEEE
Confidence 445566677788877643 33344455544433 48888763 31 0 1 122333444444555556677754
Q ss_pred ecCCChhcHHHHHH--cCCcEEEEcc
Q 023494 232 DGGVGPKNAYKVIE--AGANALVAGS 255 (281)
Q Consensus 232 DGGI~~e~i~~~~~--aGAD~~VvGS 255 (281)
.|..-...-..+.+ .|+|.+|.|-
T Consensus 87 GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 87 GGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp EESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred ECCchhcChHHHhccCcCcceecCCC
Confidence 44443434445554 7999999994
No 482
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=91.91 E-value=2 Score=41.80 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=70.6
Q ss_pred ceeeccccCCCCCccccccccchhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc
Q 023494 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (281)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp 98 (281)
++--.+-++..|+ |..-+.|++....|-.+.++=.......++-|- +|...+.+..+.+.+.|++.+.+|+
T Consensus 155 D~IKDDE~l~~q~-~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT-~~~~em~~ra~~~~~~G~~~~mv~~------- 225 (391)
T cd08209 155 DLIKDDEILFDNP-LAPALERIRACRPVLQEVYEQTGRRTLYAVNLT-GPVFTLKEKARRLVEAGANALLFNV------- 225 (391)
T ss_pred CcccccccCCCCC-CCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcC-CCHHHHHHHHHHHHHhCCCEEEEec-------
Confidence 4444455553333 333344555555554444443333455677766 6778888889999999999988864
Q ss_pred cccCCHHHHHHcCcC--CCCCeeEEE-----EecChh------h-HHHHHHHcCCCEEEEcc
Q 023494 99 NITIGPLVVDALRPV--TDLPLDVHL-----MIVEPE------Q-RVPDFIKAGADIVSVHC 146 (281)
Q Consensus 99 n~~~G~~~I~~ir~~--t~~~idaHL-----mv~dp~------~-~i~~~~~aGAd~Itvh~ 146 (281)
...|...++.|++. .++|+.+|= ++..|. . +-+.+.-+|||.++++.
T Consensus 226 -~~~G~~~l~~l~~~~~~~lpIhaHra~~ga~~~~~~~Gis~~~~l~kl~RLaGaD~~~~~~ 286 (391)
T cd08209 226 -FAYGLDVLEALASDPEINVPIFAHPAFAGALYGSPDYGIAASVLLGTLMRLAGADAVLFPS 286 (391)
T ss_pred -cccchHHHHHHHhcCcCCcEEEecCCcccccccCCCCCCcHHHHHHHHHHHcCCCccccCC
Confidence 34577788888874 467788774 233332 1 12233456666666653
No 483
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=91.91 E-value=1.9 Score=41.45 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=61.2
Q ss_pred HHHHHHHc-CCcEEE-EECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 157 TLNQIKDL-GAKAGV-VLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 157 ~l~~ik~~-G~k~Gl-ai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
.++++++. ++.+.+ -+ ...+..+...+. +|.|.| +-| |-....+-+.+++-|.++++..+ .+++|.+||
T Consensus 216 ~i~~~~~~~~~pvivKgv---~~~~da~~~~~~G~~~i~v-s~h-GGr~~d~~~~~~~~L~~i~~~~~---~~~~i~~dg 287 (356)
T PF01070_consen 216 DIEWIRKQWKLPVIVKGV---LSPEDAKRAVDAGVDGIDV-SNH-GGRQLDWGPPTIDALPEIRAAVG---DDIPIIADG 287 (356)
T ss_dssp HHHHHHHHCSSEEEEEEE----SHHHHHHHHHTT-SEEEE-ESG-TGTSSTTS-BHHHHHHHHHHHHT---TSSEEEEES
T ss_pred HHHHHhcccCCceEEEec---ccHHHHHHHHhcCCCEEEe-cCC-CcccCccccccccccHHHHhhhc---CCeeEEEeC
Confidence 36666654 445443 12 355666666654 899987 333 32334566788888888888664 358999999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
||. ...+-+.+..|||.+-+|+.+..
T Consensus 288 Gir~g~Dv~kalaLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 288 GIRRGLDVAKALALGADAVGIGRPFLY 314 (356)
T ss_dssp S--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred CCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence 999 44688889999999999988653
No 484
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=91.90 E-value=3.2 Score=37.43 Aligned_cols=121 Identities=15% Similarity=0.203 Sum_probs=78.3
Q ss_pred CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEE--eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhH
Q 023494 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVD--VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQR 130 (281)
Q Consensus 53 ~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiD--ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~ 130 (281)
+-.+..+|+.+|.+-+..++..+.+.+...|+|.+++. -.+. + +...-.+.++.+++. ++|+.+-+-..+..+.
T Consensus 16 ~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~-~--~~~~~~~~~~~l~~~-~~p~I~T~R~~~~~~~ 91 (229)
T PRK01261 16 IGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHD-H--SIESEPEIISALNEM-DIDYIFTYRGVDARKY 91 (229)
T ss_pred eCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCC-C--ChHHHHHHHHHHhhc-CCCEEEEEcCCCHHHH
Confidence 44556789999999999888888888888899998875 2332 1 111113445556654 6788877766554455
Q ss_pred HHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh
Q 023494 131 VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL 185 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l 185 (281)
...+.+.++|++=+-.+. ..+ + ..++.|.++-++-+.. +.+.+..++
T Consensus 92 l~~a~~~~~d~vDIEl~~-----~~~-~-~~~~~~~kvIvS~Htp-~~eeL~~~l 138 (229)
T PRK01261 92 YETAIDKMPPAVDLDINL-----IGK-L-EFRPRNTMLMVSYHTN-NSDNMPAIL 138 (229)
T ss_pred HHHHHhhCCCEEEEEccc-----chh-h-hhhcCCCeEEEEeCCC-CHHHHHHHH
Confidence 666677789998866552 112 2 3457788888888732 334444444
No 485
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=91.80 E-value=7.3 Score=37.28 Aligned_cols=195 Identities=20% Similarity=0.210 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHc------CCCeEEEEeeeCcccccc---cCCHHHHHHcCcCCCCCeeEEEEe-cChh----hHHHHHHH
Q 023494 71 KLGEQVKAVELA------GCDWIHVDVMDGRFVPNI---TIGPLVVDALRPVTDLPLDVHLMI-VEPE----QRVPDFIK 136 (281)
Q Consensus 71 ~l~~~l~~l~~~------G~d~iHiDImDG~fvpn~---~~G~~~I~~ir~~t~~~idaHLmv-~dp~----~~i~~~~~ 136 (281)
.|.++++...+. .++.+++ -+| +|++ ..=.++++.+++..+...++.+-+ .||. +.++.+.+
T Consensus 41 ~l~~Ei~~~~~~~~~~~~~i~~i~~--GGG--TPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~ 116 (375)
T PRK05628 41 ALRAELELAAAVLGDPAPPVSTVFV--GGG--TPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRA 116 (375)
T ss_pred HHHHHHHHHHHhhccCCCceeEEEe--CCC--ccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 556666554322 1444444 344 4543 111233444454323222233333 3664 46888899
Q ss_pred cCCCEEEEcccccc------------cccHHHHHHHHHHcCCc-EEEEEC---CCCCHHHHHHhhcc-----CCEEEE--
Q 023494 137 AGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-AGVVLN---PATSLSAIECVLDV-----VDLVLI-- 193 (281)
Q Consensus 137 aGAd~Itvh~Ea~~------------~~~i~~~l~~ik~~G~k-~Glai~---p~t~ie~~~~~l~~-----vD~Ilv-- 193 (281)
+|.+.|++..++.+ .+++.+.++.+++.|++ +.+.+- |....+.+..-++. +|.|.+
T Consensus 117 ~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~ 196 (375)
T PRK05628 117 AGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYA 196 (375)
T ss_pred cCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeee
Confidence 99999999988642 12355677888999988 877542 66666555444332 677654
Q ss_pred EeecCCCC-------C-Cccc--hhHHHHHHHHHHHhhhcCCCCeEEE-----ecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 194 MSVNPGFG-------G-QSFI--ESQVKKISDLRRMCLEKGVNPWIEV-----DGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 194 msV~pG~~-------G-Q~f~--~~~l~kI~~lr~l~~~~~~~~~I~V-----DGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+++.||.. | .+.. +...+....+.+.+.+.|+. ..++ .|.-...|.. ... +.|.+=+|.+=+
T Consensus 197 l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~-~ye~s~fa~~~~~~~hn~~-yw~-~~~~lg~G~gA~ 273 (375)
T PRK05628 197 LIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFD-WYEVSNWARPGGECRHNLG-YWR-GGDWWGAGPGAH 273 (375)
T ss_pred eecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCC-eeeeccccCCCcccccchh-hcC-CCCEEEEccCcc
Confidence 35677752 1 1111 22345566667777666543 2333 2333333432 222 678887773221
Q ss_pred ---------CCCCHHHHHHHHHH
Q 023494 259 ---------GAKDYAEAIKGIKT 272 (281)
Q Consensus 259 ---------~a~dp~~~~~~l~~ 272 (281)
+..|..+.++.+.+
T Consensus 274 s~~~~~~~~n~~~l~~Y~~~v~~ 296 (375)
T PRK05628 274 SHVGGVRWWNVKHPAAYAARLAA 296 (375)
T ss_pred cccCCEEEEcCCCHHHHHHHHHc
Confidence 23456666655543
No 486
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=91.77 E-value=10 Score=36.64 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=81.9
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CCEEEEE-eecCCCC--C-Cc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIM-SVNPGFG--G-QS 204 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD~Ilvm-sV~pG~~--G-Q~ 204 (281)
+++.+.++|.+.|-+..-+. .++-.+.++.+.+.|.+.-+.....+..+.++..++. +|.|-+. ++.+-.- . ..
T Consensus 31 ia~~L~~~GV~~IE~G~p~~-~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~ 109 (378)
T PRK11858 31 IARMLDEIGVDQIEAGFPAV-SEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKK 109 (378)
T ss_pred HHHHHHHhCCCEEEEeCCCc-ChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCC
Confidence 56778899999988754331 2334467888888888776644333445556665553 7766542 2222100 0 11
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE-ecCCC-hh----cHHHHHHcCCcEEEEcccccCCCCHH---HHHHHHHHh
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV-DGGVG-PK----NAYKVIEAGANALVAGSAVFGAKDYA---EAIKGIKTS 273 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V-DGGI~-~e----~i~~~~~aGAD~~VvGSaIf~a~dp~---~~~~~l~~~ 273 (281)
-.++.++++.+..+...+.|..+.+.. |++-. ++ -++.+.++|+|.+.+.=.. +.-.|. +.++.+++.
T Consensus 110 s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~-G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 110 TREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTV-GILDPFTMYELVKELVEA 186 (378)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccC-CCCCHHHHHHHHHHHHHh
Confidence 246778888888887777665444332 55543 44 3455678899988776221 333454 444444443
No 487
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=91.77 E-value=2.3 Score=40.56 Aligned_cols=108 Identities=20% Similarity=0.298 Sum_probs=76.5
Q ss_pred ceEeEEEeccCccCHH---HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHH
Q 023494 58 IIVSPSILSANFAKLG---EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDF 134 (281)
Q Consensus 58 ~~i~pSila~D~~~l~---~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~ 134 (281)
.+...|+..-|..+.+ +++++|.++||+.+-+= ||+. .-.+.++.|++.++.|+.+|+--+.. +.-.+
T Consensus 19 PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRva------vp~~-~~A~al~~I~~~~~iPlVADIHFd~~--lAl~a 89 (346)
T TIGR00612 19 PIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVT------VPDR-ESAAAFEAIKEGTNVPLVADIHFDYR--LAALA 89 (346)
T ss_pred cEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEc------CCCH-HHHHhHHHHHhCCCCCEEEeeCCCcH--HHHHH
Confidence 3556788888777766 56678889999998774 3432 13456777777788999998876642 33356
Q ss_pred HHcCCCEEEEccccc-ccccHHHHHHHHHHcCCcEEEEECC
Q 023494 135 IKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNP 174 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p 174 (281)
.+.|+|-+-+-.-.. ..+.+.++++.+|++|+-+=+-.|.
T Consensus 90 ~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~ 130 (346)
T TIGR00612 90 MAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNH 130 (346)
T ss_pred HHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 788999998875432 2456889999999999765555553
No 488
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=91.77 E-value=2.2 Score=41.19 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=54.9
Q ss_pred ccccccchhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC
Q 023494 34 SFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113 (281)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~ 113 (281)
..-+.|++....|-.+.++-.......+|-|- +|...+.+..+.+.+.|++.+.+|++- .|...++.+++.
T Consensus 172 ~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~~--------~G~~~l~~l~~~ 242 (366)
T cd08148 172 CPLRDRITEVAAALDRVQEETGEKKLYAVNVT-AGTFEIIERAERALELGANMLMVDVLT--------AGFSALQALAED 242 (366)
T ss_pred CcHHHHHHHHHHHHHHHHHhhCCcceEEEEcc-CCHHHHHHHHHHHHHhCCCEEEEeccc--------cchHHHHHHHHh
Confidence 33345566666655554444444556777777 555788888999999999998887444 466788888874
Q ss_pred --CCCCeeEEE
Q 023494 114 --TDLPLDVHL 122 (281)
Q Consensus 114 --t~~~idaHL 122 (281)
.+.++.+|-
T Consensus 243 ~~~~l~IhaHr 253 (366)
T cd08148 243 FEIDLPIHVHR 253 (366)
T ss_pred CcCCcEEEecc
Confidence 367888874
No 489
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=91.76 E-value=2.7 Score=38.48 Aligned_cols=122 Identities=17% Similarity=0.151 Sum_probs=71.2
Q ss_pred EEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---CCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 63 SILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 63 Sila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
-++.-||..-.-++..+..+|+|.++++..+- + +..++++-+. .+....+. +.+.. -++.+.++|+
T Consensus 113 Pvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l---~-----~~~l~~li~~a~~lGl~~lve--vh~~~-E~~~A~~~ga 181 (260)
T PRK00278 113 PVLRKDFIIDPYQIYEARAAGADAILLIVAAL---D-----DEQLKELLDYAHSLGLDVLVE--VHDEE-ELERALKLGA 181 (260)
T ss_pred CEEeeeecCCHHHHHHHHHcCCCEEEEEeccC---C-----HHHHHHHHHHHHHcCCeEEEE--eCCHH-HHHHHHHcCC
Confidence 34557887777789999999999999985552 1 2333333221 23332222 23433 3356778999
Q ss_pred CEEEEcccccc--cccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhcc-CCEEEEEe
Q 023494 140 DIVSVHCEQSS--TIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV-VDLVLIMS 195 (281)
Q Consensus 140 d~Itvh~Ea~~--~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~~-vD~Ilvms 195 (281)
|+|.+|..+.. ..++..+.+.++.. +..+-++..--+..+.+..+... +|-|++++
T Consensus 182 diIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGs 241 (260)
T PRK00278 182 PLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGE 241 (260)
T ss_pred CEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECH
Confidence 99999964210 12243333333332 22255666555566777777664 78888743
No 490
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=91.74 E-value=0.77 Score=46.14 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=71.4
Q ss_pred HHHHHHHcCCCEEEEccccc---ccccHHHHHHHHHH----------c-CCcEEEEECCC-CCHHHHHHhhc-cCCEEEE
Q 023494 130 RVPDFIKAGADIVSVHCEQS---STIHLHRTLNQIKD----------L-GAKAGVVLNPA-TSLSAIECVLD-VVDLVLI 193 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~---~~~~i~~~l~~ik~----------~-G~k~Glai~p~-t~ie~~~~~l~-~vD~Ilv 193 (281)
-++.+.+.+...+-|--+.. ..-+...+++.... . -+.+|.++.+. ...++.+.+++ .+|+|.+
T Consensus 187 Al~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~i 266 (505)
T PLN02274 187 AEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVL 266 (505)
T ss_pred HHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEE
Confidence 35566677777665543210 01223333333322 1 24578888764 34688888877 4999876
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
=+. .| ....+++.|+++|+..+. .+| +-|+|. .+.+..+.++|||++++|
T Consensus 267 D~~----~g--~~~~~~~~i~~ik~~~p~----~~v-i~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 267 DSS----QG--DSIYQLEMIKYIKKTYPE----LDV-IGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred eCC----CC--CcHHHHHHHHHHHHhCCC----CcE-EEecCCCHHHHHHHHHcCcCEEEEC
Confidence 432 13 233566778888876542 344 567776 889999999999999986
No 491
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=91.61 E-value=0.78 Score=42.63 Aligned_cols=85 Identities=13% Similarity=0.179 Sum_probs=64.0
Q ss_pred HHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Q 023494 105 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC 183 (281)
Q Consensus 105 ~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~ 183 (281)
+.++.+|+. +...+.|.+ . ..+....+.++|+|.|-+|-. +.+++.+.++.+++.+.++-+...-+-..+.+.+
T Consensus 177 ~av~~~r~~~~~~kIeVEv--~-tleea~ea~~~GaDiI~lDn~--~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ 251 (277)
T TIGR01334 177 GAIGRLKQTAPERKITVEA--D-TIEQALTVLQASPDILQLDKF--TPQQLHHLHERLKFFDHIPTLAAAGGINPENIAD 251 (277)
T ss_pred HHHHHHHHhCCCCCEEEEC--C-CHHHHHHHHHcCcCEEEECCC--CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHH
Confidence 567777764 445565544 2 334667788999999999966 4677888888887666778888888888899999
Q ss_pred hhcc-CCEEEEE
Q 023494 184 VLDV-VDLVLIM 194 (281)
Q Consensus 184 ~l~~-vD~Ilvm 194 (281)
|... +|+|.+.
T Consensus 252 ya~~GvD~is~g 263 (277)
T TIGR01334 252 YIEAGIDLFITS 263 (277)
T ss_pred HHhcCCCEEEeC
Confidence 9875 9998653
No 492
>PLN02321 2-isopropylmalate synthase
Probab=91.61 E-value=7.8 Score=40.14 Aligned_cols=182 Identities=19% Similarity=0.217 Sum_probs=100.4
Q ss_pred HHHHHHHHcCCCeEEEEeeeCccccccc-CCHHHHHHcCcC--CCCCeeEEE------EecChhhHHHHHHHc--CCC--
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNIT-IGPLVVDALRPV--TDLPLDVHL------MIVEPEQRVPDFIKA--GAD-- 140 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~-~G~~~I~~ir~~--t~~~idaHL------mv~dp~~~i~~~~~a--GAd-- 140 (281)
+.++.|.+.|+|.|++ | | |..+ -..+.++.|.+. ...+.++-. --.+. +-++.++++ +++
T Consensus 112 ~Ia~~L~~lGVd~IEv----G-f-P~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~-~dId~A~~al~~a~~~ 184 (632)
T PLN02321 112 DIARQLAKLGVDIIEA----G-F-PIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNK-KDIDAAWEAVKHAKRP 184 (632)
T ss_pred HHHHHHHHcCCCEEEE----e-C-cCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccH-HhHHHHHHHhcCCCCC
Confidence 4456777899998887 4 3 2221 123456666442 112222211 11232 346667776 443
Q ss_pred EEEEcccccccc---------------cHHHHHHHHHHcCCcEEEEECCC----CCHHHHHHhhcc-----CCEEEEEee
Q 023494 141 IVSVHCEQSSTI---------------HLHRTLNQIKDLGAKAGVVLNPA----TSLSAIECVLDV-----VDLVLIMSV 196 (281)
Q Consensus 141 ~Itvh~Ea~~~~---------------~i~~~l~~ik~~G~k~Glai~p~----t~ie~~~~~l~~-----vD~IlvmsV 196 (281)
.|++..-.. .. .+.+.++.+|++|+. -+.+.+. ++.+.+.++++. +|.|.+
T Consensus 185 ~I~i~~stS-d~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~-~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L--- 259 (632)
T PLN02321 185 RIHTFIATS-EIHMEHKLRKTPDEVVEIARDMVKYARSLGCE-DVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNI--- 259 (632)
T ss_pred EEEEEEcCC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCc-eEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEe---
Confidence 465554321 11 256778888999874 2333333 566666665543 666654
Q ss_pred cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEcccccC------CCCHHHH
Q 023494 197 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVFG------AKDYAEA 266 (281)
Q Consensus 197 ~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf~------a~dp~~~ 266 (281)
|-..|.....+..+.|+.+++.++.. .+..|.+ |-|.-..|.-..+++||+.+ =+.|++ +.+.++.
T Consensus 260 -~DTvG~~~P~~v~~li~~l~~~~~~~-~~v~i~vH~HND~GlAvANslaAv~AGA~~V--d~TinGlGERaGNa~LEev 335 (632)
T PLN02321 260 -PDTVGYTLPSEFGQLIADIKANTPGI-ENVIISTHCQNDLGLSTANTLAGAHAGARQV--EVTINGIGERAGNASLEEV 335 (632)
T ss_pred -cccccCCCHHHHHHHHHHHHHhcCCC-CCceEEEEeCCCCCHHHHHHHHHHHhCCCEE--EEecccccccccCccHHHH
Confidence 34445444456667777777665421 1245666 77888888888999999975 333442 2345555
Q ss_pred HHHHH
Q 023494 267 IKGIK 271 (281)
Q Consensus 267 ~~~l~ 271 (281)
+..|+
T Consensus 336 v~~L~ 340 (632)
T PLN02321 336 VMAIK 340 (632)
T ss_pred HHHHH
Confidence 54443
No 493
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=91.58 E-value=11 Score=36.27 Aligned_cols=188 Identities=12% Similarity=0.143 Sum_probs=107.1
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--cccc--ccC------------CHHHHHHcCcCCCCCeeEEEEecCh--hh
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPN--ITI------------GPLVVDALRPVTDLPLDVHLMIVEP--EQ 129 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn--~~~------------G~~~I~~ir~~t~~~idaHLmv~dp--~~ 129 (281)
|+..+.-.++.+++.....| +-+-.++ |... +.. ...+++.+.+..+.|+-+||==... ..
T Consensus 30 n~e~~~avi~AAee~~sPVI-lq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~~ 108 (350)
T PRK09197 30 GTDSINAVLEGAAEAKSPVI-IQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHTDHCAKKLLP 108 (350)
T ss_pred CHHHHHHHHHHHHHHCCCEE-EEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcchH
Confidence 33344455666777777665 4444432 1110 111 1234454445567899999865433 44
Q ss_pred HHHHHHHcC-----------CCEEEEccccccc----ccHHHHHHHHHHcCCcE----EEE------E--------CCCC
Q 023494 130 RVPDFIKAG-----------ADIVSVHCEQSST----IHLHRTLNQIKDLGAKA----GVV------L--------NPAT 176 (281)
Q Consensus 130 ~i~~~~~aG-----------Ad~Itvh~Ea~~~----~~i~~~l~~ik~~G~k~----Gla------i--------~p~t 176 (281)
++..++++| .+.|-+=.-..+. ..-+++++.++..|+-+ |-. . ..-|
T Consensus 109 ~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~T 188 (350)
T PRK09197 109 WIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYT 188 (350)
T ss_pred HHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCccccccccccccC
Confidence 677777777 5555433222111 12346677788888654 211 1 1136
Q ss_pred CHHHHHHhhcc--C----CEEE--EEeecCCCC-CCccchhHHHHHHHHHHHhhhc-C---CCCeEEEecC--CChhcHH
Q 023494 177 SLSAIECVLDV--V----DLVL--IMSVNPGFG-GQSFIESQVKKISDLRRMCLEK-G---VNPWIEVDGG--VGPKNAY 241 (281)
Q Consensus 177 ~ie~~~~~l~~--v----D~Il--vmsV~pG~~-GQ~f~~~~l~kI~~lr~l~~~~-~---~~~~I~VDGG--I~~e~i~ 241 (281)
..+...++.+. + |.+. +.++|--+. +.+ .-.+++|+++++.+.++ + .++++..=|| +..|.++
T Consensus 189 dPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p--~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~ 266 (350)
T PRK09197 189 QPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNV--KLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIR 266 (350)
T ss_pred CHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCC--ccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHH
Confidence 77777777764 4 6644 344542222 211 12366777777776322 1 1478888775 4578999
Q ss_pred HHHHcCCcEEEEccccc
Q 023494 242 KVIEAGANALVAGSAVF 258 (281)
Q Consensus 242 ~~~~aGAD~~VvGSaIf 258 (281)
++++.|+.-+=+++.+.
T Consensus 267 ~ai~~GI~KINi~T~l~ 283 (350)
T PRK09197 267 EAVSYGVVKMNIDTDTQ 283 (350)
T ss_pred HHHHCCCeeEEeCcHHH
Confidence 99999999999998875
No 494
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=91.47 E-value=10 Score=34.62 Aligned_cols=189 Identities=21% Similarity=0.270 Sum_probs=102.8
Q ss_pred HHHHHHHHcCCCeE-EEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccc
Q 023494 74 EQVKAVELAGCDWI-HVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 152 (281)
Q Consensus 74 ~~l~~l~~~G~d~i-HiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~ 152 (281)
+..++..+.|+|.+ -+||--- ..+-..-.++|++.-+...+|+-+-==+...+ -++.++.+|||=|++--.+ ..
T Consensus 34 elA~~Y~e~GADElvFlDItAs--~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~e-D~~~ll~aGADKVSINsaA--v~ 108 (256)
T COG0107 34 ELAKRYNEEGADELVFLDITAS--SEGRETMLDVVERVAEQVFIPLTVGGGIRSVE-DARKLLRAGADKVSINSAA--VK 108 (256)
T ss_pred HHHHHHHHcCCCeEEEEecccc--cccchhHHHHHHHHHhhceeeeEecCCcCCHH-HHHHHHHcCCCeeeeChhH--hc
Confidence 34557778899974 3344321 12222334556665444445554433333333 4667889999999999775 45
Q ss_pred cHHHHHHHHHHcCCcEEE-EECCC--------------------CCH---HHHHHhhcc-CCEEEEEeecC-CCCCCccc
Q 023494 153 HLHRTLNQIKDLGAKAGV-VLNPA--------------------TSL---SAIECVLDV-VDLVLIMSVNP-GFGGQSFI 206 (281)
Q Consensus 153 ~i~~~l~~ik~~G~k~Gl-ai~p~--------------------t~i---e~~~~~l~~-vD~IlvmsV~p-G~~GQ~f~ 206 (281)
+++-+-+..++.|..+.+ +|... |.+ +..+++-+. +-=|++=+.+- |. .+-|
T Consensus 109 ~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGt-k~Gy- 186 (256)
T COG0107 109 DPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGT-KAGY- 186 (256)
T ss_pred ChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeeccccc-ccCc-
Confidence 666566667778877654 33221 112 222222221 33355444432 22 1123
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEcccccCCCCHHHHHHHHHHhcCcCcc
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVFGAKDYAEAIKGIKTSKRPQAV 279 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaIf~a~dp~~~~~~l~~~~~~~~~ 279 (281)
.++.++.+++.+ ++|+..-||.. ++++.++...| ||...+. +||-.. +-.+.++++.++++.+
T Consensus 187 --Dl~l~~~v~~~v-----~iPvIASGGaG~~ehf~eaf~~~~adAaLAA-siFH~~--~~~i~evK~yL~~~gi 251 (256)
T COG0107 187 --DLELTRAVREAV-----NIPVIASGGAGKPEHFVEAFTEGKADAALAA-SIFHFG--EITIGEVKEYLAEQGI 251 (256)
T ss_pred --CHHHHHHHHHhC-----CCCEEecCCCCcHHHHHHHHHhcCccHHHhh-hhhhcC--cccHHHHHHHHHHcCC
Confidence 344445555443 47888899998 88998888777 8866544 455321 1234455555554443
No 495
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=91.46 E-value=14 Score=35.63 Aligned_cols=188 Identities=12% Similarity=0.111 Sum_probs=107.6
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcc--ccc--ccC-------------CHHHHHHcCcCCCCCeeEEEEecChh-
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRF--VPN--ITI-------------GPLVVDALRPVTDLPLDVHLMIVEPE- 128 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~f--vpn--~~~-------------G~~~I~~ir~~t~~~idaHLmv~dp~- 128 (281)
.|+..+.-.++.+++.+...| +.+-.|++ ... +.. -..+++.+.+....|+-+||==....
T Consensus 35 ~n~e~~~Avi~AAEe~~sPvI-lq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg~~~~ 113 (357)
T TIGR01520 35 TSSSTINAALEAAADVKSPII-IQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHCAKKL 113 (357)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcc
Confidence 344455566677777777765 55544431 110 000 22345555555578999998554333
Q ss_pred -hHHHHHHHcCC---------CEEEEccccc--c----cccHHHHHHHHHHcCCcE----EEE--------EC------C
Q 023494 129 -QRVPDFIKAGA---------DIVSVHCEQS--S----TIHLHRTLNQIKDLGAKA----GVV--------LN------P 174 (281)
Q Consensus 129 -~~i~~~~~aGA---------d~Itvh~Ea~--~----~~~i~~~l~~ik~~G~k~----Gla--------i~------p 174 (281)
.+++.++++|- .+-+++...+ + ...-+++++.++..|+-+ |-. .. .
T Consensus 114 ~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~ 193 (357)
T TIGR01520 114 LPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEAL 193 (357)
T ss_pred hHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccccc
Confidence 46888888871 1334444332 1 122456777788888654 211 11 1
Q ss_pred CCCHHHHHHhhc------cCCEEE--EEeecCCCC-C-CccchhHHHHHHHHHHHhhhcCCCCe------EEEecC--CC
Q 023494 175 ATSLSAIECVLD------VVDLVL--IMSVNPGFG-G-QSFIESQVKKISDLRRMCLEKGVNPW------IEVDGG--VG 236 (281)
Q Consensus 175 ~t~ie~~~~~l~------~vD~Il--vmsV~pG~~-G-Q~f~~~~l~kI~~lr~l~~~~~~~~~------I~VDGG--I~ 236 (281)
-|..+..+++.+ .+|.+. +.++|--+. + .++. +++|+++++.+.+. .+++ +..=|| +.
T Consensus 194 yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld---~d~L~~I~~~~~~~-~~vP~~~~~pLVLHGgSGi~ 269 (357)
T TIGR01520 194 YTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLT---PDILADGQEYVSEK-LGLPAAKPLFFVFHGGSGST 269 (357)
T ss_pred CCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccC---HHHHHHHHHHHHHh-cCCCcCCCCcEEEeCCCCCC
Confidence 367777778765 468754 455552221 2 2233 55566665443111 1244 877775 45
Q ss_pred hhcHHHHHHcCCcEEEEcccccC
Q 023494 237 PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 237 ~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+.++++++.|+.-+=+++.+..
T Consensus 270 ~e~i~kai~~GI~KINi~Tdl~~ 292 (357)
T TIGR01520 270 KQEIKEALSYGVVKMNIDTDTQW 292 (357)
T ss_pred HHHHHHHHHCCCeEEEeCcHHHH
Confidence 78999999999999999988753
No 496
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=91.46 E-value=0.36 Score=47.00 Aligned_cols=97 Identities=20% Similarity=0.267 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh---hHHHHHHHcCCCEEEEccccc-
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE---QRVPDFIKAGADIVSVHCEQS- 149 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~---~~i~~~~~aGAd~Itvh~Ea~- 149 (281)
+..+.+.+.|+|+|-+-=|-|-..|+..+ +.|+.||+.++.|+.+|--..-.- .|+ ++.+||+|+|---.-..
T Consensus 160 ~~akel~~~g~DSIciKDmaGlltP~~ay--elVk~iK~~~~~pv~lHtH~TsG~a~m~yl-kAvEAGvD~iDTAisp~S 236 (472)
T COG5016 160 ELAKELLEMGVDSICIKDMAGLLTPYEAY--ELVKAIKKELPVPVELHTHATSGMAEMTYL-KAVEAGVDGIDTAISPLS 236 (472)
T ss_pred HHHHHHHHcCCCEEEeecccccCChHHHH--HHHHHHHHhcCCeeEEecccccchHHHHHH-HHHHhCcchhhhhhcccc
Confidence 44456778899998777777877787654 789999998888888776554322 233 46799999874432211
Q ss_pred ---ccccHHHHHHHHHHcCCcEEEEEC
Q 023494 150 ---STIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 150 ---~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
+-+..+..+.+++..|...|+.+.
T Consensus 237 ~gtsqP~tEtmv~aL~gt~yDtgld~~ 263 (472)
T COG5016 237 GGTSQPATETMVAALRGTGYDTGLDLE 263 (472)
T ss_pred CCCCCCcHHHHHHHhcCCCCCccccHH
Confidence 223456677788888999998874
No 497
>PTZ00300 pyruvate kinase; Provisional
Probab=91.41 E-value=3.6 Score=40.93 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=84.7
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHhhccCCEEEEEeecCCCC-CCccc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV--LNPATSLSAIECVLDVVDLVLIMSVNPGFG-GQSFI 206 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla--i~p~t~ie~~~~~l~~vD~IlvmsV~pG~~-GQ~f~ 206 (281)
.++.+.+.|+|+|.+..-. +.+++.++.+.+.+.|..+.+. |.....++.+.++++.+|.|++-.-+-|.. | .
T Consensus 152 dI~~ald~gvd~I~~SfVr-saeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~---~ 227 (454)
T PTZ00300 152 DLQFGVEQGVDMIFASFIR-SAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIP---A 227 (454)
T ss_pred HHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcC---h
Confidence 4667789999999998765 3677888888888777666665 444446688999999999998854333332 2 2
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCC----------Chh---cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGV----------GPK---NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI----------~~e---~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+......+++.+.+++.| .++-+.-=+ |.. .+...+--|+|.+.+..-=-.-..|.++++.|.+.
T Consensus 228 e~vp~~Qk~Ii~~~~~~g--kpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I 305 (454)
T PTZ00300 228 EKVVVAQKILISKCNVAG--KPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARI 305 (454)
T ss_pred HHHHHHHHHHHHHHHHcC--CCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHH
Confidence 333333344444444433 233332211 111 23334445999998853322235677787777765
Q ss_pred c
Q 023494 274 K 274 (281)
Q Consensus 274 ~ 274 (281)
+
T Consensus 306 ~ 306 (454)
T PTZ00300 306 C 306 (454)
T ss_pred H
Confidence 4
No 498
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=91.29 E-value=5.7 Score=32.72 Aligned_cols=96 Identities=23% Similarity=0.319 Sum_probs=53.7
Q ss_pred HHHHcCCcEEEEECCCCCHHHHHHhh-c-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCC-CCeEEEecCC-
Q 023494 160 QIKDLGAKAGVVLNPATSLSAIECVL-D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDGGV- 235 (281)
Q Consensus 160 ~ik~~G~k~Glai~p~t~ie~~~~~l-~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~-~~~I~VDGGI- 235 (281)
.++.+|.++ +.+-...|.|.+.+-. + .+|.|.+-+.. ..++..++++.+++.+++. ++++.|.|++
T Consensus 22 ~L~~~GfeV-idLG~~v~~e~~v~aa~~~~adiVglS~L~---------t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~ 91 (128)
T cd02072 22 AFTEAGFNV-VNLGVLSPQEEFIDAAIETDADAILVSSLY---------GHGEIDCKGLREKCDEAGLKDILLYVGGNLV 91 (128)
T ss_pred HHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccc---------cCCHHHHHHHHHHHHHCCCCCCeEEEECCCC
Confidence 445566655 2333444555444432 2 47888653222 1223344555555555555 6788888875
Q ss_pred -Chhc----HHHHHHcCCcEEEEcccccCC-CCHHHHHHHHH
Q 023494 236 -GPKN----AYKVIEAGANALVAGSAVFGA-KDYAEAIKGIK 271 (281)
Q Consensus 236 -~~e~----i~~~~~aGAD~~VvGSaIf~a-~dp~~~~~~l~ 271 (281)
..+. ..++.++|+| ++|.. .++.+.+..|+
T Consensus 92 i~~~d~~~~~~~L~~~Gv~------~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 92 VGKQDFEDVEKRFKEMGFD------RVFAPGTPPEEAIADLK 127 (128)
T ss_pred CChhhhHHHHHHHHHcCCC------EEECcCCCHHHHHHHHh
Confidence 3344 4669999987 44544 46677776665
No 499
>PLN02334 ribulose-phosphate 3-epimerase
Probab=91.28 E-value=7.3 Score=34.67 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=71.9
Q ss_pred CeeEEEEecChhh---HHHHHHHcCCCEEEEcccccc-cccHH---HHHHHHHHcC-CcEEEEECCCCCHHHHHHhhc-c
Q 023494 117 PLDVHLMIVEPEQ---RVPDFIKAGADIVSVHCEQSS-TIHLH---RTLNQIKDLG-AKAGVVLNPATSLSAIECVLD-V 187 (281)
Q Consensus 117 ~idaHLmv~dp~~---~i~~~~~aGAd~Itvh~Ea~~-~~~i~---~~l~~ik~~G-~k~Glai~p~t~ie~~~~~l~-~ 187 (281)
.+...++..|+.. .++.+.+.|++++++=..... .+... +.++.+++.. ..+++-+....|...+..+.. .
T Consensus 9 ~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~g 88 (229)
T PLN02334 9 IIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAG 88 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcC
Confidence 3555566666543 467778889999998644320 11222 5788888874 334776665556665555544 4
Q ss_pred CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-C-hhcHHHHHHcC-CcEEEEcccc
Q 023494 188 VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-G-PKNAYKVIEAG-ANALVAGSAV 257 (281)
Q Consensus 188 vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~-~e~i~~~~~aG-AD~~VvGSaI 257 (281)
+|+|.++ .| |.-.......++++++. +..+.+.-.- + .+.+..+.+.| +|.+.+|+--
T Consensus 89 ad~v~vH---~~---q~~~d~~~~~~~~i~~~------g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~ 149 (229)
T PLN02334 89 ASIFTFH---IE---QASTIHLHRLIQQIKSA------GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVE 149 (229)
T ss_pred CCEEEEe---ec---cccchhHHHHHHHHHHC------CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEe
Confidence 8988664 33 20111223334443332 3445444431 2 44555555554 9999998643
No 500
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=91.27 E-value=9.8 Score=34.93 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=69.1
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh-----hHHHHHHHcCCCEEE
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE-----QRVPDFIKAGADIVS 143 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~-----~~i~~~~~aGAd~It 143 (281)
..++.+.++.|.+.|.|++ .|-|+.---...-...+.+.|++..+++...|+-+.|-. .++..+.++|.+.|.
T Consensus 14 ~~~l~~~~~~l~~~~pd~i--svT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL 91 (272)
T TIGR00676 14 EENLWETVDRLSPLDPDFV--SVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHIL 91 (272)
T ss_pred HHHHHHHHHHHhcCCCCEE--EeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEE
Confidence 4677788888888888885 667762211112233455667765689999999986542 245556889998777
Q ss_pred Ec-cccc---------ccccHHHHHHHHHHc--CCcEEEEECCC
Q 023494 144 VH-CEQS---------STIHLHRTLNQIKDL--GAKAGVVLNPA 175 (281)
Q Consensus 144 vh-~Ea~---------~~~~i~~~l~~ik~~--G~k~Glai~p~ 175 (281)
+. +... ...+..++++.+++. ...+|++.+|.
T Consensus 92 ~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Pe 135 (272)
T TIGR00676 92 ALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPE 135 (272)
T ss_pred EeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 43 2211 113466778888875 57899999876
Done!