RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 023494
(281 letters)
>gnl|CDD|215192 PLN02334, PLN02334, ribulose-phosphate 3-epimerase.
Length = 229
Score = 400 bits (1030), Expect = e-143
Identities = 144/233 (61%), Positives = 167/233 (71%), Gaps = 6/233 (2%)
Query: 51 DKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDAL 110
DKFSK+D I++PSILSA+FA L E+ K V AG DW+HVDVMDG FVPN+TIGP VV AL
Sbjct: 1 DKFSKNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKAL 60
Query: 111 RPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV 170
R TD PLD HLM+ PE VPDF KAGA I + H EQ+STIHLHR + QIK G KAGV
Sbjct: 61 RKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGV 120
Query: 171 VLNPATSLSAIECVLDV--VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228
VLNP T + A+E V++ VD+VL+MSV PGFGGQSFI S + K+ LR+ E
Sbjct: 121 VLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPEL----D 176
Query: 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
IEVDGGVGP K EAGAN +VAGSAVFGA DYAE I G++ S AVAV
Sbjct: 177 IEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEKAAVAV 229
>gnl|CDD|235515 PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.
Length = 220
Score = 364 bits (937), Expect = e-129
Identities = 131/219 (59%), Positives = 167/219 (76%), Gaps = 2/219 (0%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
++++PSILSA+FA+LGE+VKAVE AG DWIHVDVMDG FVPN+TIGP VV+A+R VT LP
Sbjct: 4 VLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLP 63
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LDVHLM+ P++ VPDF KAGADI++ H E ++ H+HR L IK G KAG+VLNPAT
Sbjct: 64 LDVHLMVENPDRYVPDFAKAGADIITFHVE--ASEHIHRLLQLIKSAGIKAGLVLNPATP 121
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
L +E VLD++DLVL+MSVNPGFGGQ FI ++KI +LR++ E+G++ IEVDGG+
Sbjct: 122 LEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA 181
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276
N + EAGA+ VAGSAVFGA DY EAI ++
Sbjct: 182 DNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAELAA 220
>gnl|CDD|238244 cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme
catalyses the interconversion of D-ribulose 5-phosphate
(Ru5P) into D-xylulose 5-phosphate, as part of the
Calvin cycle (reductive pentose phosphate pathway) in
chloroplasts and in the oxidative pentose phosphate
pathway. In the Calvin cycle Ru5P is phosphorylated by
phosphoribulose kinase to ribulose-1,5-bisphosphate,
which in turn is used by RubisCO
(ribulose-1,5-bisphosphate carboxylase/oxygenase) to
incorporate CO2 as the central step in carbohydrate
synthesis.
Length = 211
Score = 356 bits (916), Expect = e-126
Identities = 126/213 (59%), Positives = 157/213 (73%), Gaps = 2/213 (0%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
++PSILSA+FA LGE++K +E AG DWIH+DVMDG FVPN+T GP VV ALR TDLPL
Sbjct: 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPL 60
Query: 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178
DVHLM+ PE+ + F KAGADI++ H E +T HLHRT+ IK+LG KAGV LNP T +
Sbjct: 61 DVHLMVENPERYIEAFAKAGADIITFHAE--ATDHLHRTIQLIKELGMKAGVALNPGTPV 118
Query: 179 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238
+E LD VDLVL+MSVNPGFGGQ FI ++KI LR + E +N IEVDGG+ +
Sbjct: 119 EVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLE 178
Query: 239 NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
+ EAGA+ LVAGSA+FG+ DYAEAIK ++
Sbjct: 179 TIPLLAEAGADVLVAGSALFGSDDYAEAIKELR 211
>gnl|CDD|223114 COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate
transport and metabolism].
Length = 220
Score = 330 bits (848), Expect = e-115
Identities = 124/217 (57%), Positives = 161/217 (74%), Gaps = 3/217 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
+ ++PSILSA+FA+LGE++KA+E AG D IH+DVMDG FVPNIT GP VV ALR +TDLP
Sbjct: 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLP 63
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LDVHLM+ P++ + F KAGADI++ H E +T H+HRT+ IK+LG KAG+VLNPAT
Sbjct: 64 LDVHLMVENPDRYIEAFAKAGADIITFHAE--ATEHIHRTIQLIKELGVKAGLVLNPATP 121
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
L A+E VLD VDLVL+MSVNPGFGGQ FI ++KI +LR M E+ + IEVDGG+
Sbjct: 122 LEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERL-DILIEVDGGINL 180
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274
+ ++ AGA+ VAGSA+FGA DY I+ ++
Sbjct: 181 ETIKQLAAAGADVFVAGSALFGADDYKATIRELRGEL 217
>gnl|CDD|130231 TIGR01163, rpe, ribulose-phosphate 3-epimerase. This family
consists of Ribulose-phosphate 3-epimerase, also known
as pentose-5-phosphate 3-epimerase (PPE). PPE converts
D-ribulose 5-phosphate into D-xylulose 5-phosphate in
Calvin's reductive pentose phosphate cycle. It has been
found in a wide range of bacteria, archebacteria, fungi
and plants [Energy metabolism, Pentose phosphate
pathway].
Length = 210
Score = 327 bits (841), Expect = e-114
Identities = 131/212 (61%), Positives = 167/212 (78%), Gaps = 2/212 (0%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
++PSILSA+FA+LGE+VKAVE AG DWIHVDVMDG FVPN+T GP V++ALR TDLP+D
Sbjct: 1 IAPSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPID 60
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
VHLM+ P++ + DF +AGADI++VH E ++ H+HR L IKDLGAKAG+VLNPAT L
Sbjct: 61 VHLMVENPDRYIEDFAEAGADIITVHPE--ASEHIHRLLQLIKDLGAKAGIVLNPATPLE 118
Query: 180 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
+E VL VDLVL+MSVNPGFGGQ FI ++KI ++R+M E G++ IEVDGGV N
Sbjct: 119 FLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDN 178
Query: 240 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
A ++ EAGA+ LVAGSA+FGA DY E I+ ++
Sbjct: 179 ARELAEAGADILVAGSAIFGADDYKEVIRSLR 210
>gnl|CDD|216142 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family.
This enzyme catalyzes the conversion of D-ribulose
5-phosphate into D-xylulose 5-phosphate.
Length = 201
Score = 326 bits (837), Expect = e-114
Identities = 131/203 (64%), Positives = 164/203 (80%), Gaps = 2/203 (0%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
++PS+LSA+FA LGE++KAVE AG DW+HVDVMDG FVPN+TIGPLVV+ALRP+T+LPL
Sbjct: 1 KIAPSLLSADFAHLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTELPL 60
Query: 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178
DVHLM+ EP++ +PDF +AGADI+S H E ++ H HRT+ IK+ GAKAG+VLNPAT L
Sbjct: 61 DVHLMVEEPDRIIPDFAEAGADIISFHAE--ASDHPHRTIQLIKEAGAKAGLVLNPATPL 118
Query: 179 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238
AIE +LD +DLVL+MSVNPGFGGQSFI S + KI +R+M E G++ IEVDGGV
Sbjct: 119 DAIEYLLDDLDLVLLMSVNPGFGGQSFIPSVLPKIRKVRKMIDEGGLDTLIEVDGGVNLD 178
Query: 239 NAYKVIEAGANALVAGSAVFGAK 261
N ++ EAGA+ LVAGSAVFGA
Sbjct: 179 NIPQIAEAGADVLVAGSAVFGAP 201
>gnl|CDD|240303 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase;
Provisional.
Length = 228
Score = 222 bits (569), Expect = 7e-73
Identities = 91/218 (41%), Positives = 137/218 (62%), Gaps = 8/218 (3%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP- 117
I++PSIL+A+F+KL ++ + V G DW+HVDVMDG FVPN++ GP VV +LR
Sbjct: 8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTF 67
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LD HLM+ PE+ V DF KAGA + H E + +I++ G K GV + P T
Sbjct: 68 LDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPK-AVARKIREAGMKVGVAIKPKTP 126
Query: 178 LSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
+ + ++D +VD+VL+M+V PGFGGQSF+ + K+ +LR+ + + I+VDGG+
Sbjct: 127 VEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRK----RYPHLNIQVDGGI 182
Query: 236 GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+ +AGAN +VAGS++F AKD +AI+ ++ S
Sbjct: 183 NLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRES 220
>gnl|CDD|136958 PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional.
Length = 223
Score = 218 bits (557), Expect = 3e-71
Identities = 111/220 (50%), Positives = 145/220 (65%), Gaps = 5/220 (2%)
Query: 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-T 114
++PSILSA+FA+LGE+V V AG DW+H DVMD +VPN+TIGP+V ALR
Sbjct: 2 QPTAIAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGI 61
Query: 115 DLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173
P+DVHLM VEP R VPDF AGA +S H E S H+HRT+ IK G +AG+VLN
Sbjct: 62 TAPIDVHLM-VEPVDRIVPDFADAGATTISFHPEASR--HVHRTIQLIKSHGCQAGLVLN 118
Query: 174 PATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233
PAT + ++ VL +DLVL+MSVNPGFGGQ+FI S + K+ +R+ G +E+DG
Sbjct: 119 PATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDG 178
Query: 234 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
GV N + AGA+ VAGSA+F A DYA+ I ++ +
Sbjct: 179 GVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAA 218
>gnl|CDD|181575 PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional.
Length = 220
Score = 212 bits (540), Expect = 9e-69
Identities = 106/215 (49%), Positives = 145/215 (67%), Gaps = 3/215 (1%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLP 117
+++PSILSA+FA+LGE V+ V AG D +H DVMD +VPN+T G + ALR P
Sbjct: 1 LIAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAP 60
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
+DVHLM+ ++ +PDF KAGA +++ H E S H+ RTL IK+ G +AGVVLNPAT
Sbjct: 61 IDVHLMVKPVDRIIPDFAKAGASMITFHVEASE--HVDRTLQLIKEHGCQAGVVLNPATP 118
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
L +E ++D VDL+L+MSVNPGFGGQSFI + K+ +R+M E G + +E+DGGV
Sbjct: 119 LHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKV 178
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272
N ++ EAGA+ VAGSA+FG DY I ++
Sbjct: 179 DNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRA 213
>gnl|CDD|236616 PRK09722, PRK09722, allulose-6-phosphate 3-epimerase; Provisional.
Length = 229
Score = 199 bits (508), Expect = 9e-64
Identities = 72/206 (34%), Positives = 124/206 (60%), Gaps = 3/206 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
+ +SPS++ + K EQ++ + + D+ H+D+MDG FVPN+T+ P V ++ + P
Sbjct: 3 MKISPSLMCMDLLKFKEQIEFLN-SKADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKP 61
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LDVHLM+ +P+ + AGAD +++H E + R +++I+ G K G+VLNP T
Sbjct: 62 LDVHLMVTDPQDYIDQLADAGADFITLHPETING-QAFRLIDEIRRAGMKVGLVLNPETP 120
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+ +I+ + ++D + +M+V+PGF GQ FI + KI++L+ + G+ IEVDG
Sbjct: 121 VESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQ 180
Query: 238 KNAYKVIEAGANALVAG-SAVFGAKD 262
K K++EAGA+ + G S +F +
Sbjct: 181 KTYEKLMEAGADVFIVGTSGLFNLDE 206
>gnl|CDD|169179 PRK08005, PRK08005, epimerase; Validated.
Length = 210
Score = 107 bits (269), Expect = 2e-28
Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 10/208 (4%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
+I+ PS+ SA+ + E + A+ A +H+D+ D F+ NIT G + A+ T P
Sbjct: 1 MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHP 60
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
L HLM+ P++ +P + +H E S + L I+ +GAKAG+ LNPAT
Sbjct: 61 LSFHLMVSSPQRWLPWLAAIRPGWIFIHAE--SVQNPSEILADIRAIGAKAGLALNPATP 118
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE--VDGGV 235
L + +D ++IM+ P GQ FI + +K+S R P E DGG+
Sbjct: 119 LLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF------PAAECWADGGI 172
Query: 236 GPKNAYKVIEAGANALVAGSAVFGAKDY 263
+ A + AGA LV G A+F +Y
Sbjct: 173 TLRAARLLAAAGAQHLVIGRALFTTANY 200
>gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional.
Length = 254
Score = 88.2 bits (218), Expect = 1e-20
Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 13/208 (6%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
+S IL+ + L ++ +E +H+D+MDG+F P T+GP V L P T + D
Sbjct: 22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-D 79
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK---------DLGAKAGV 170
VHLM+ + +KAGA +++ E IHLH TL+ + ++ G+
Sbjct: 80 VHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGI 137
Query: 171 VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230
L PAT L I +L V+++ +++VNPG+G + ++++ L + +K I
Sbjct: 138 SLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV 197
Query: 231 VDGGVGPKNAYKVIEAGANALVAGSAVF 258
+DG + +I G + +V+GSA+F
Sbjct: 198 IDGSLTQDQLPSLIAQGIDRVVSGSALF 225
>gnl|CDD|169215 PRK08091, PRK08091, ribulose-phosphate 3-epimerase; Validated.
Length = 228
Score = 87.2 bits (216), Expect = 1e-20
Identities = 57/216 (26%), Positives = 106/216 (49%), Gaps = 6/216 (2%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
+S IL++N+ K E + + +H D+ DG+F P T+G + + P D
Sbjct: 15 ISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQF-PTHCFK-D 72
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA--GVVLNPATS 177
VHLM+ + + + AGADIV++ EQ T L T+ + G+ L P T
Sbjct: 73 VHLMVRDQFEVAKACVAAGADIVTLQVEQ--THDLALTIEWLAKQKTTVLIGLCLCPETP 130
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+S +E LD +DL+ I++++P G ++ + + ++ + + V I +DG +
Sbjct: 131 ISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTL 190
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+ A + + + +V+GSA+F + +K K+S
Sbjct: 191 ELASYLKQHQIDWVVSGSALFSQGELKTTLKEWKSS 226
>gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a
structurally conserved phosphate binding motif and in
general share an eight beta/alpha closed barrel
structure. Specific for this family is the conserved
phosphate binding site at the edges of strands 7 and 8.
The phosphate comes either from the substrate, as in the
case of inosine monophosphate dehydrogenase (IMPDH), or
from ribulose-5-phosphate 3-epimerase (RPE) or from
cofactors, like FMN.
Length = 200
Score = 78.8 bits (194), Expect = 1e-17
Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 14/205 (6%)
Query: 60 VSPSILSANFAK-LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
V ++L+ + E KA AG D I V T V+ + TDLPL
Sbjct: 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPL 60
Query: 119 DVHLMIVEPEQRVPD----FIKAGADIVSVHCEQSSTI-HLHRTLNQIKD--LGAKAGVV 171
V L I + V AGAD V +H + ++++ K V
Sbjct: 61 GVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVK 120
Query: 172 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231
L+P L+A VD V + + G GG+ + I+DL + ++G +
Sbjct: 121 LSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVP-----IADLLLILAKRGSKVPVIA 175
Query: 232 DGGVG-PKNAYKVIEAGANALVAGS 255
GG+ P++A + + GA+ ++ GS
Sbjct: 176 GGGINDPEDAAEALALGADGVIVGS 200
>gnl|CDD|132172 TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. Members of
this protein family are 3-hexulose-6-phosphate synthase
(HPS), or the HPS domain of a fusion protein. This
enzyme is part of the ribulose monophosphate (RuMP)
pathway, which in one direction removes the toxic
metabolite formaldehyde by assimilation into
fructose-6-phosphate. In the other direction, in species
lacking a complete pentose phosphate pathway, the RuMP
pathway yields ribulose-5-phosphate, necessary for
nucleotide biosynthesis, at the cost of also yielding
formaldehyde. These latter species tend usually have a
formaldehyde-activating enzyme to attach formaldehyde to
the C1 carrier tetrahydromethanopterin. In these
species, the enzyme is viewed as a lyase rather than a
synthase and is called D-arabino 3-hexulose 6-phosphate
formaldehyde lyase. Note that there is some overlap in
specificity with the Escherichia coli enzyme
3-keto-L-gulonate 6-phosphate decarboxylase.
Length = 206
Score = 42.4 bits (100), Expect = 8e-05
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
DL+ + L+ + V GG+ VI+ G + ++ G A+ A D AEA + I+
Sbjct: 146 FEDLQTI-LKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIR 203
>gnl|CDD|223347 COG0269, SgbH, 3-hexulose-6-phosphate synthase and related proteins
[Carbohydrate transport and metabolism].
Length = 217
Score = 41.9 bits (99), Expect = 1e-04
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 202 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261
G+S+ E ++KI L + + + V GG+ P++ GA+ ++ G A+ GAK
Sbjct: 146 GKSWGEDDLEKIKKLSDLGAK------VAVAGGITPEDIPLFKGIGADIVIVGRAITGAK 199
Query: 262 DYAEAIKGIKTS 273
D AEA + K
Sbjct: 200 DPAEAARKFKEE 211
>gnl|CDD|234590 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed.
Length = 212
Score = 40.2 bits (95), Expect = 5e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 268
GG+ P+NA +V+EAGA+ + SA+ GA+D A +
Sbjct: 167 GGITPENAPEVLEAGADGVAVVSAITGAEDPEAAAR 202
>gnl|CDD|233555 TIGR01740, pyrF, orotidine 5'-phosphate decarboxylase, subfamily 1.
This model represents orotidine 5'-monophosphate
decarboxylase, the PyrF protein of pyrimidine nucleotide
biosynthesis. In many eukaryotes, the region hit by this
model is part of a multifunctional protein [Purines,
pyrimidines, nucleosides, and nucleotides, Pyrimidine
ribonucleotide biosynthesis].
Length = 214
Score = 40.0 bits (94), Expect = 5e-04
Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 15/147 (10%)
Query: 135 IKAGADIVSVH-CEQSSTIH-LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL 192
IK GAD+V+VH ++ ++ G A L TS+ + D ++ V+
Sbjct: 73 IKLGADMVNVHGVAGKESVEAAKEAASEFGRRGLLAVAEL---TSMGSEAYGEDTMEAVI 129
Query: 193 IMSVN------PGFGGQSFIESQVKKI-SDLRRMCLEKGVNPWIEV-DGGVGPKNAYKVI 244
+ G + +++K D + G+ + D
Sbjct: 130 EYAKEAKEFGLDGPVCSAEEAKEIRKATGDFLILT--PGIRLDSKDADDQQRVVTLEDAK 187
Query: 245 EAGANALVAGSAVFGAKDYAEAIKGIK 271
EAGA+ ++ G ++ A+D EA K I+
Sbjct: 188 EAGADVIIVGRGIYAAEDPVEAAKRIR 214
>gnl|CDD|238317 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution
of the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-
(beta-hydroxyethyl) thiazole phosphate to yield thiamine
phosphate. TenI is a enzymatically inactive regulatory
protein involved in the regulation of several
extracellular enzymes. This superfamily also contains
other enzymatically inactive proteins with unknown
functions.
Length = 196
Score = 39.0 bits (92), Expect = 0.001
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 268
GG+ P+NA +V+ AGA+ + SA+ GA D A A +
Sbjct: 157 GGITPENAAEVLAAGADGVAVISAITGADDPAAAAR 192
>gnl|CDD|240077 cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate decarboxylase
(KGPDC) and D-arabino-3-hexulose-6-phosphate synthase
(HPS). KGPDC catalyzes the formation of L-xylulose
5-phosphate and carbon dioxide from 3-keto-L-gulonate
6-phosphate as part of the anaerobic pathway for
L-ascorbate utilization in some eubacteria. HPS
catalyzes the formation of
D-arabino-3-hexulose-6-phosphate from D-ribulose
5-phosphate and formaldehyde in microorganisms that can
use formaldehyde as a carbon source. Both catalyze
reactions that involve the Mg2+-assisted formation and
stabilization of 1,2-enediolate reaction intermediates.
Length = 202
Score = 38.3 bits (90), Expect = 0.002
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270
DL+++ GV + V GG+ P + +AGA+ ++ G A+ GA D AEA +
Sbjct: 149 DLKKVKKLLGVK--VAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAAREF 202
>gnl|CDD|223429 COG0352, ThiE, Thiamine monophosphate synthase [Coenzyme
metabolism].
Length = 211
Score = 37.6 bits (88), Expect = 0.003
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272
GG+ +N +V+EAGA+ + SA+ A D A A K ++
Sbjct: 165 GGINLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRN 204
>gnl|CDD|233094 TIGR00693, thiE, thiamine-phosphate pyrophosphorylase. This model
represents the thiamine-phosphate pyrophosphorylase,
ThiE, of a number of bacteria, and N-terminal domains of
bifunctional thiamine proteins of Saccharomyces
cerevisiae and Schizosaccharomyces pombe, in which the
C-terminal domain corresponds to the bacterial
hydroxyethylthiazole kinase (EC 2.7.1.50), ThiM. This
model includes ThiE from Bacillus subtilis but excludes
its paralog, the regulatory protein TenI , and neighbors
of TenI [Biosynthesis of cofactors, prosthetic groups,
and carriers, Thiamine].
Length = 196
Score = 35.7 bits (83), Expect = 0.012
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270
LR + P + + GG+ +NA +V+ AGA+ + SA+ A D A K +
Sbjct: 143 LREIAATSIDIPIVAI-GGITLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196
>gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 404
Score = 36.2 bits (83), Expect = 0.014
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 125 VEPEQRVPDFIKAGADIV---SVHCEQSSTIHLHRTL-NQIKDLGAKAGVVLNPATSLSA 180
++ +RV + +KA DI+ S H + I L + + + +L AG ++ +L
Sbjct: 152 IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDL 211
Query: 181 IECVLDVVDLVLIMSVNPGFGGQSFIES-----QVKKISDLRRMCLEKGVNPWIEVDGGV 235
I D L + + PG + I + Q+ I D+ +C K N I DGG+
Sbjct: 212 ISVGADC----LKVGIGPGSICTTRIVAGVGVPQITAICDVYEVC--KNTNICIIADGGI 265
Query: 236 G-PKNAYKVIEAGANALVAGSAVFGAKD 262
+ K I AGA++++ G+ G K+
Sbjct: 266 RFSGDVVKAIAAGADSVMIGNLFAGTKE 293
>gnl|CDD|215795 pfam00215, OMPdecase, Orotidine 5'-phosphate decarboxylase / HUMPS
family. This family includes Orotidine 5'-phosphate
decarboxylase enzymes EC:4.1.1.23 that are involved in
the final step of pyrimidine biosynthesis. The family
also includes enzymes such as hexulose-6-phosphate
synthase. This family appears to be distantly related to
pfam00834.
Length = 217
Score = 34.9 bits (81), Expect = 0.026
Identities = 35/151 (23%), Positives = 51/151 (33%), Gaps = 21/151 (13%)
Query: 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAG------VVLNPATSLSAIECVLDV 187
K GADIV+VH TL K+ + G L+ SL E
Sbjct: 74 KAKLGADIVTVHAYAGD-----GTLKAAKEAAEEYGKGLLLVAELSSKGSLDLQEEGDLG 128
Query: 188 VDLVLI-----MSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA 240
++ ++ G G S E + D + G+ GG
Sbjct: 129 YTQEIVHRAADLAAFAGVDGVVASATEPEAALGPDFLLLT--PGIGLQGGDAGGQQRVTT 186
Query: 241 YKVI-EAGANALVAGSAVFGAKDYAEAIKGI 270
V EAGA+ ++ G + GA D A + I
Sbjct: 187 PAVAKEAGADIIIVGRGITGAGDPVAAARAI 217
>gnl|CDD|183964 PRK13307, PRK13307, bifunctional formaldehyde-activating
enzyme/3-hexulose-6-phosphate synthase; Provisional.
Length = 391
Score = 35.4 bits (82), Expect = 0.028
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 222 EKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 268
+ G + V GGV +N + ++AGA+ LV G A+ +KD A +
Sbjct: 326 KAGGKILVAVAGGVRVENVEEALKAGADILVVGRAITKSKDVRRAAE 372
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 34.4 bits (79), Expect = 0.066
Identities = 35/198 (17%), Positives = 62/198 (31%), Gaps = 27/198 (13%)
Query: 95 RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFIKAGADIVSVHCEQSSTI 152
RFV N + P + A+R P+ V V + K G D V +H +S
Sbjct: 37 RFVGNKFLAPNLEKAIRKAGGRPVGV---FVNESAKAMLKFSKKNGIDFVQLHGAESKAE 93
Query: 153 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG--QSFIESQV 210
+ K + +++ A ++ D V L + +GG +SF
Sbjct: 94 PAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGSGKSFD---W 150
Query: 211 KKISD--LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV------AGSAVFGAKD 262
+K + + + GG+ P N ++I ++ G K
Sbjct: 151 EKFYNYNFKFPFF---------LSGGLSPTNFDRIINLTHPQILGIDVSSGFEDSPGNKK 201
Query: 263 YAEAIKGIKTSKRPQAVA 280
I K+
Sbjct: 202 LTLLKSFITNVKKKYLSD 219
>gnl|CDD|239237 cd02911, arch_FMN, Archeal FMN-binding domain. This family of
archaeal proteins are part of the NAD(P)H-dependent
flavin oxidoreductase (oxidored) FMN-binding family that
reduce a range of alternative electron acceptors. Most
use FAD/FMN as a cofactor and NAD(P)H as electron donor.
Some contain 4Fe-4S cluster to transfer electron from
FAD to FMN. The specific function of this group is
unknown.
Length = 233
Score = 32.7 bits (75), Expect = 0.14
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 47 SARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV 106
S + ++ + VS I + E + +E AG D IHVD MD P
Sbjct: 129 SEFIKALKETGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMD----------PGN 178
Query: 107 VDALRPVTDLPLDVHLM----IVEPEQRVPDFIKAGADIVSV 144
L+ + D+ ++ ++ + E + GAD+VSV
Sbjct: 179 HADLKKIRDISTELFIIGNNSVTTIES-AKEMFSYGADMVSV 219
>gnl|CDD|202027 pfam01884, PcrB, PcrB family. This family contains proteins that
are related to PcrB. The function of these proteins is
unknown.
Length = 231
Score = 32.5 bits (74), Expect = 0.18
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 231 VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274
V GG+ + A ++ AGA+ +V G+ + AI I +
Sbjct: 187 VGGGIKSGEKAKEMARAGADVIVTGNVIEEKGKVERAIDAILETL 231
>gnl|CDD|182008 PRK09635, sigI, RNA polymerase sigma factor SigI; Provisional.
Length = 290
Score = 31.9 bits (72), Expect = 0.32
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 29 QPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLG 73
QP+ L+F R + ++ S K +K ++V PS L A+LG
Sbjct: 244 QPAVLAFVNRALAGVLALSIEAGKITKIHVLVQPSTLDPLRAELG 288
>gnl|CDD|235054 PRK02615, PRK02615, thiamine-phosphate pyrophosphorylase;
Provisional.
Length = 347
Score = 31.8 bits (73), Expect = 0.36
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 227 PWIEVDGGVGPKNAYKVIEAGAN--ALVAGSAVFGAKDYAEAIKGIKT 272
PW + GG+ N +V++AGA A+V A+ GA+D +A + +
Sbjct: 296 PWFAI-GGIDKSNIPEVLQAGAKRVAVV--RAIMGAEDPKQATQELLK 340
>gnl|CDD|224560 COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel
fold [General function prediction only].
Length = 240
Score = 31.1 bits (71), Expect = 0.54
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 231 VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYA-EAIKGIK 271
V GG+ P+ A ++ EAGA+ +V G+ + D A E ++ IK
Sbjct: 196 VGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKALETVEAIK 238
>gnl|CDD|147701 pfam05690, ThiG, Thiazole biosynthesis protein ThiG. This family
consists of several bacterial thiazole biosynthesis
protein G sequences. ThiG, together with ThiF and ThiH,
is proposed to be involved in the synthesis of
4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an
intermediate in the thiazole production pathway.
Length = 246
Score = 30.6 bits (70), Expect = 0.62
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 231 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 268
VD G+G P +A + +E GA+A++ +A+ AKD A A K
Sbjct: 179 VDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFK 220
>gnl|CDD|224933 COG2022, ThiG, Uncharacterized enzyme of thiazole biosynthesis
[Nucleotide transport and metabolism].
Length = 262
Score = 30.7 bits (70), Expect = 0.62
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 231 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 268
VD G+G P +A + +E GA+A++ +A+ AKD A A
Sbjct: 187 VDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFA 228
>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated.
Length = 592
Score = 31.0 bits (71), Expect = 0.73
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 26/80 (32%)
Query: 77 KAVELA--GCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH------------L 122
A EL GCD I + M G P LV AL+ DLP+ +H L
Sbjct: 159 LAKELEEMGCDSICIKDMAGLLTPYAA-YELV-KALKEEVDLPVQLHSHCTSGLAPMTYL 216
Query: 123 MIVEPEQRVPDFIKAGADIV 142
VE AG DI+
Sbjct: 217 KAVE----------AGVDII 226
>gnl|CDD|225555 COG3010, NanE, Putative N-acetylmannosamine-6-phosphate epimerase
[Carbohydrate transport and metabolism].
Length = 229
Score = 30.7 bits (70), Expect = 0.73
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 237 PKNAYKVIEAGANALVAGSAV----FGAKDYAEAIKGI 270
P+ A K IE GA+A+V GSA+ + + +AIK
Sbjct: 192 PEQAKKAIEIGADAVVVGSAITRPEEITQWFVDAIKSA 229
>gnl|CDD|237293 PRK13185, chlL, protochlorophyllide reductase iron-sulfur
ATP-binding protein; Provisional.
Length = 270
Score = 30.7 bits (70), Expect = 0.74
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI 124
LSA FAKLG++V + GCD H D F + P V+D L V D H
Sbjct: 22 LSAAFAKLGKKVLQI---GCDPKH----DSTFTLTGKLVPTVIDILEEV-----DFHSEE 69
Query: 125 VEPEQRVPDFIKAG 138
+ PE DF+ G
Sbjct: 70 LRPE----DFVYEG 79
>gnl|CDD|223361 COG0284, PyrF, Orotidine-5'-phosphate decarboxylase [Nucleotide
transport and metabolism].
Length = 240
Score = 30.7 bits (70), Expect = 0.74
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 19/154 (12%)
Query: 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV--------L 185
GAD V+VH L K+ G + TSL+++ +
Sbjct: 85 AADLGADAVTVHAFGGF-----DMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINS 139
Query: 186 DVVDLVLIMSVNPGFGGQSFI-----ESQ-VKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
+ + VL ++ G G + E +++I + L G+ +
Sbjct: 140 SLEEQVLRLAKLAGEAGLDGVVCSAEEVAAIREILGPDFLILTPGIGAGSQGGDQGRVMT 199
Query: 240 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+ + AGA+ +V G + A D A + I
Sbjct: 200 PGEAVRAGADYIVVGRPITQAGDPVAAARAIARE 233
>gnl|CDD|181086 PRK07695, PRK07695, transcriptional regulator TenI; Provisional.
Length = 201
Score = 30.4 bits (69), Expect = 0.82
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFG-------AKDYAEAIKG 269
GG+ P+N V+ AG + + S +F AK YAE+IK
Sbjct: 156 GGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKK 199
>gnl|CDD|237520 PRK13813, PRK13813, orotidine 5'-phosphate decarboxylase;
Provisional.
Length = 215
Score = 29.9 bits (68), Expect = 1.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 234 GVGPKN--AYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270
G+G + A I+AGA+ ++ G +++ A D EA K I
Sbjct: 170 GIGAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAI 208
>gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional.
Length = 596
Score = 30.5 bits (68), Expect = 1.2
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDV 120
SP NF +LG+++ + GCD I + M G P +T+ + L+ T LP+ +
Sbjct: 148 SPVHTLDNFLELGKKLAEM---GCDSIAIKDMAGLLTPTVTVE--LYAGLKQATGLPVHL 202
Query: 121 H 121
H
Sbjct: 203 H 203
>gnl|CDD|233243 TIGR01036, pyrD_sub2, dihydroorotate dehydrogenase, subfamily 2.
This model describes enzyme protein dihydroorotate
dehydrogenase exclusively for subfamily 2. It includes
members from bacteria, yeast, plants etc. The
subfamilies 1 and 2 share extensive homology,
particularly toward the C-terminus. This subfamily has a
longer N-terminal region [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 336
Score = 30.1 bits (68), Expect = 1.3
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 189 DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLE-KGVNPWIEVDGGVGPKNAYKVIEAG 247
LV GG S Q+K +RR+ LE G P I V G ++A + I AG
Sbjct: 251 SLVQGPKNCDQTGGLSGKPLQLKSTEIIRRLYLELNGRLPIIGVGGIDSAQDAREKIAAG 310
Query: 248 ANAL 251
A+ L
Sbjct: 311 ASLL 314
>gnl|CDD|227349 COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy
production and conversion].
Length = 472
Score = 30.0 bits (68), Expect = 1.4
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 24/81 (29%)
Query: 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH------------ 121
E K + G D I + M G P +V A++ +P+++H
Sbjct: 160 ELAKELLEMGVDSICIKDMAGLLTPYEAYE--LVKAIKKELPVPVELHTHATSGMAEMTY 217
Query: 122 LMIVEPEQRVPDFIKAGADIV 142
L VE AG D +
Sbjct: 218 LKAVE----------AGVDGI 228
>gnl|CDD|234679 PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.
Length = 548
Score = 30.1 bits (69), Expect = 1.5
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 97 VPNITIG-----P-LVVDALRPVTDLPLDVH 121
V NI IG P +V +ALRP D L VH
Sbjct: 148 VVNIGIGGSDLGPVMVTEALRPYADPGLRVH 178
>gnl|CDD|240079 cd04728, ThiG, Thiazole synthase (ThiG) is the tetrameric enzyme
that is involved in the formation of the thiazole moiety
of thiamin pyrophosphate, an essential ubiquitous
cofactor that plays an important role in carbohydrate
and amino acid metabolism. ThiG catalyzes the formation
of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP)
and dehydroglycine, with the help of the sulfur carrier
protein ThiS that carries the sulfur needed for thiazole
assembly on its carboxy terminus (ThiS-COSH).
Length = 248
Score = 29.0 bits (66), Expect = 2.1
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 216 LRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 268
LR + V P I VD G+G P +A + +E GA+A++ +A+ AKD A A K
Sbjct: 167 LRIIIERADV-PVI-VDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFK 221
>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein. This
model represents a family of proteins, often annotated
as a putative IMP dehydrogenase, related to IMP
dehydrogenase and GMP reductase and restricted to the
high GC Gram-positive bacteria. All species in which a
member is found so far (Corynebacterium glutamicum,
Mycobacterium tuberculosis, Streptomyces coelicolor,
etc.) also have IMP dehydrogenase as described by
TIGRFAMs entry TIGR01302 [Unknown function, General].
Length = 475
Score = 29.5 bits (66), Expect = 2.2
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--VEPEQ 129
+G + KA+ AG D + +D G V I A++ V L L V ++ V +
Sbjct: 226 VGGKAKALLDAGVDVLVIDTAHGHQVKMI-------SAIKAVRALDLGVPIVAGNVVSAE 278
Query: 130 RVPDFIKAGADIVSV 144
V D ++AGA+I+ V
Sbjct: 279 GVRDLLEAGANIIKV 293
>gnl|CDD|234410 TIGR03949, bact_IIb_cerein, class IIb bacteriocin, lactobin
A/cerein 7B family. Members of this protein family are
described variably as bacteriocins per se, one chain of
a two-chain bacteriocin, or bacteriocin enhancer
proteins. All members of the seed alignment occur in
paired gene contexts with another member of the same
protein family. This family includes bacteriocins that
appear not to undergo post-translational modification,
other than cleavage at a Gly-Gly motif coupled to
sec-independent export. For many members, the N-terminal
bacteriocin cleavage motif region is recognized by
TIGR01847. C-terminal to the cleavage motif, these
proteins are hydrophobic and low in complexity,
consistent with pore-forming activity as a mechanism of
bacteriocin action.
Length = 45
Score = 26.6 bits (59), Expect = 2.3
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261
V+GGV P + GA V GA
Sbjct: 11 NVNGGVAPIAVAIAVGGGAGGAAGAGFVAGAA 42
>gnl|CDD|235912 PRK07028, PRK07028, bifunctional hexulose-6-phosphate
synthase/ribonuclease regulator; Validated.
Length = 430
Score = 29.2 bits (66), Expect = 2.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
I V GG+ + A K + AGA+ ++ G + + D EA + I+ +
Sbjct: 165 IAVAGGLDAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREA 209
>gnl|CDD|217120 pfam02581, TMP-TENI, Thiamine monophosphate synthase/TENI.
Thiamine monophosphate synthase (TMP) (EC:2.5.1.3)
catalyzes the substitution of the pyrophosphate of
2-methyl-4-amino-5- hydroxymethylpyrimidine
pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole
phosphate to yield thiamine phosphate. This Pfam family
also includes the regulatory protein TENI.
Length = 180
Score = 28.3 bits (64), Expect = 2.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAV 257
GG+ P+N +V+EAGA+ + SA+
Sbjct: 156 GGITPENVPEVLEAGADGVAVVSAI 180
>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 479
Score = 29.1 bits (66), Expect = 3.1
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 107 VDALRPVTDLPLDVHLM---IVEPEQRVPDFIKAGADIVSV 144
++ALR V L V ++ +V E D ++AGADIV V
Sbjct: 256 LEALRAVRALDPGVPIVAGNVVTAEG-TRDLVEAGADIVKV 295
>gnl|CDD|165164 PHA02813, PHA02813, hypothetical protein; Provisional.
Length = 354
Score = 28.7 bits (64), Expect = 3.5
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 113 VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL 172
++D+ LD + +++ E+ DF D + + HL LN G + +
Sbjct: 87 ISDIILDNTITLIKYEK--GDFFNNHRDFIHFKSKNCYCYHLVLYLNNTSK-GGNTNIHI 143
Query: 173 NPATSLSAIECVLDVVDLVLIMSVNP 198
T S VL D L S +
Sbjct: 144 KDNTIFSTKNDVL--FDKTLNHSSDI 167
>gnl|CDD|112483 pfam03668, ATP_bind_2, P-loop ATPase protein family. This family
contains an ATP-binding site and could be an ATPase
(personal obs:C Yeats).
Length = 284
Score = 28.6 bits (64), Expect = 3.9
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 91 VMDGRFVPNITIGPLVVDALRPVTDL 116
V D RF+PN P LRP+T L
Sbjct: 182 VFDVRFLPN----PHWDPELRPLTGL 203
>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an
uncharacterized subgroup of the nitrilase superfamily
(putative class 13 nitrilases). Members of this
subgroup have two nitrilase domains. This is the second
of those two domains. The nitrilase superfamily is
comprised of nitrile- or amide-hydrolyzing enzymes and
amide-condensing enzymes, which depend on a Glu-Lys-Cys
catalytic triad. This superfamily has been classified in
the literature based on global and structure based
sequence analysis into thirteen different enzyme classes
(referred to as 1-13). Class 13 represents proteins that
at the time were difficult to place in a distinct
similarity group; this subgroup represents either a new
class or one that was included previously in class 13.
Members of this superfamily generally form homomeric
complexes, the basic building block of which is a
homodimer.
Length = 279
Score = 28.3 bits (63), Expect = 3.9
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 51 DKFSKSDIIVSPSILSANFAK--LGEQVKAVELAGCDWIHVDVMDGR 95
D S ++V P L + K L E ++ G W D+ GR
Sbjct: 84 DGLYNSAVLVGPEGLVGTYRKTHLIEPERSWATPGDTWPVYDLPLGR 130
>gnl|CDD|215245 PLN02446, PLN02446,
(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase.
Length = 262
Score = 28.1 bits (63), Expect = 4.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVF 258
++V GGV +NA ++AGA+ ++ S VF
Sbjct: 86 LQVGGGVNSENAMSYLDAGASHVIVTSYVF 115
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 28.2 bits (63), Expect = 4.8
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 26/93 (27%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM 123
++ A+F +GE +ELAGCD +TI P +++ LR T+ L L
Sbjct: 226 VMGASFRNIGE---IIELAGCDL-------------LTISPKLLEQLRS-TEAELPRKL- 267
Query: 124 IVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHR 156
+P AG +I +H ++++ +H
Sbjct: 268 --DPAN------AAGMEIEKIHMDRATFDKMHA 292
>gnl|CDD|237103 PRK12447, PRK12447, histidinol dehydrogenase; Reviewed.
Length = 426
Score = 27.9 bits (63), Expect = 5.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 47 SARVDKFSKSDIIVSPSILSANFAKLGEQVKA 78
S + DK+S +S + + A AK+ EQVK
Sbjct: 45 SRKFDKWSPGSFRLSAAEIDAAVAKVPEQVKE 76
>gnl|CDD|163675 cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase and
Transcarboxylase 5S, carboxyltransferase domain. This
family includes the carboxyltransferase domains of
pyruvate carboxylase (PC) and the transcarboxylase (TC)
5S subunit. Transcarboxylase 5S is a cobalt-dependent
metalloenzyme subunit of the biotin-dependent
transcarboxylase multienzyme complex. Transcarboxylase
5S transfers carbon dioxide from the 1.3S biotin to
pyruvate in the second of two carboxylation reactions
catalyzed by TC. The first reaction involves the
transfer of carbon dioxide from methylmalonyl-CoA to the
1.3S biotin, and is catalyzed by the 12S subunit. These
two steps allow a carboxylate group to be transferred
from oxaloacetate to propionyl-CoA to yield pyruvate and
methylmalonyl-CoA. The catalytic domain of
transcarboxylase 5S has a canonical TIM-barrel fold with
a large C-terminal extension that forms a funnel leading
to the active site. Transcarboxylase 5S forms a
homodimer and there are six dimers per complex. In
addition to the catalytic domain, transcarboxylase 5S
has several other domains including a
carbamoyl-phosphate synthase domain, a biotin
carboxylase domain, a carboxyltransferase domain, and an
ATP-grasp domain. Pyruvate carboxylase, like TC, is a
biotin-dependent enzyme that catalyzes the carboxylation
of pyruvate to produce oxaloacetate. In mammals, PC has
critical roles in gluconeogenesis, lipogenesis,
glyceroneogenesis, and insulin secretion. Inherited PC
deficiencies are linked to serious diseases in humans
such as lactic acidemia, hypoglycemia, psychomotor
retardation, and death. PC is a single-chain enzyme and
is active only in its homotetrameric form. PC has three
domains, an N-terminal biotin carboxylase domain, a
carboxyltransferase domain (this alignment model), and a
C-terminal biotin-carboxyl carrier protein domain. This
family belongs to the DRE-TIM metallolyase superfamily.
DRE-TIM metallolyases include 2-isopropylmalate synthase
(IPMS), alpha-isopropylmalate synthase (LeuA),
3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate
synthase, citramalate synthase, 4-hydroxy-2-oxovalerate
aldolase, re-citrate synthase, transcarboxylase 5S,
pyruvate carboxylase, AksA, and FrbC. These members all
share a conserved triose-phosphate isomerase (TIM)
barrel domain consisting of a core beta(8)-alpha(8)
motif with the eight parallel beta strands forming an
enclosed barrel surrounded by eight alpha helices. The
domain has a catalytic center containing a divalent
cation-binding site formed by a cluster of invariant
residues that cap the core of the barrel. In addition,
the catalytic site includes three invariant residues -
an aspartate (D), an arginine (R), and a glutamate (E) -
which is the basis for the domain name "DRE-TIM".
Length = 275
Score = 27.8 bits (63), Expect = 5.9
Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 32/85 (37%)
Query: 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV----VDALRPVTDLPLDVH-------- 121
+ K +E G D I + M G + P V AL+ LP+ +H
Sbjct: 153 KLAKELEDMGADSICIKDMAG------LLTPYAAYELVKALKKEVGLPIHLHTHDTSGLA 206
Query: 122 ----LMIVEPEQRVPDFIKAGADIV 142
L E AG DIV
Sbjct: 207 VATYLAAAE----------AGVDIV 221
>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase. Bacterial ProB proteins hit
the full length of this model, but the ProB-like domain
of delta 1-pyrroline-5-carboxylate synthetase does not
hit the C-terminal 100 residues of this model. The
noise cutoff is set low enough to hit delta
1-pyrroline-5-carboxylate synthetase and other partial
matches to this family [Amino acid biosynthesis,
Glutamate family].
Length = 363
Score = 28.0 bits (63), Expect = 6.1
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 31 SSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAG 83
SS S R I +V+ A + +IVS ++A F LG + LA
Sbjct: 15 SSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAIAAGFEALGLPERPKTLAE 67
>gnl|CDD|234687 PRK00208, thiG, thiazole synthase; Reviewed.
Length = 250
Score = 27.7 bits (63), Expect = 6.2
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 231 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 268
VD G+G P +A + +E GA+A++ +A+ A D A A K
Sbjct: 180 VDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFK 221
>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase. This enzyme is an iron-sulfur
protein. It is localized to mitochondria in yeast and
Arabidopsis. It generates lipoic acid, a thiol
antioxidant that is linked to a specific Lys as
prosthetic group for the pyruvate and
alpha-ketoglutarate dehydrogenase complexes and the
glycine-cleavage system. The family shows strong
sequence conservation [Biosynthesis of cofactors,
prosthetic groups, and carriers, Lipoate].
Length = 302
Score = 27.9 bits (62), Expect = 7.1
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 98 PNITIGPLVVD------ALRPVTDLPLDVHLMIVEPEQRVPDFIKAGAD 140
PNI I LV D AL + D P DV+ +E +R+ F++ GA
Sbjct: 141 PNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGAT 189
>gnl|CDD|232779 TIGR00007, TIGR00007, phosphoribosylformimino-5-aminoimidazole
carboxamide ribotide isomerase. This protein family
consists of HisA,
phosphoribosylformimino-5-aminoimidazole carboxamide
ribotide isomerase, the enzyme catalyzing the fourth
step in histidine biosynthesis. It is closely related to
the enzyme HisF for the sixth step. Examples of this
enzyme in Actinobacteria have been found to be
bifunctional, also possessing phosphoribosylanthranilate
isomerase activity ; the trusted cutoff here has now
been raised to 275.0 to exclude the bifunctional group,
now represented by model TIGR01919. HisA from
Lactococcus lactis was reported to be inactive
(MEDLINE:93322317) [Amino acid biosynthesis, Histidine
family].
Length = 230
Score = 27.5 bits (62), Expect = 7.4
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 184 VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-AYK 242
+ VVDL + G +KKI + ++V GG+ K
Sbjct: 44 RIHVVDL------DGAKEGGPVNLPVIKKIV--------RETGVPVQVGGGIRSLEDVEK 89
Query: 243 VIEAGANALVAGSAVF 258
+++ G + ++ G+A
Sbjct: 90 LLDLGVDRVIIGTAAV 105
>gnl|CDD|153287 cd07603, BAR_ACAPs, The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP
with Coiled-coil, ANK repeat and PH domain containing
proteins. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. This subfamily is
composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat
and PH domain containing proteins), which are Arf GTPase
activating proteins (GAPs) containing an N-terminal BAR
domain, followed by a Pleckstrin homology (PH) domain,
an Arf GAP domain, and C-terminal ankyrin (ANK) repeats.
Vertebrates contain at least three members, ACAP1,
ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific
GAPs, involved in the regulation of endocytosis,
phagocytosis, cell adhesion and migration, by mediating
Arf6 signaling. BAR domains form dimers that bind to
membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 200
Score = 27.3 bits (61), Expect = 7.6
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 203 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA----YKVIEA--GANALVAGSA 256
Q+F++ +KK+ + ++ EK + ++D + KNA K EA N L A +
Sbjct: 93 QNFVKEDIKKVKESKKH-FEKISD---DLDNALV-KNAQAPRSKPQEAEEATNILTATRS 147
Query: 257 VFG--AKDYAEAIKGIKTSKRPQAV 279
F A DY I ++ KR + +
Sbjct: 148 CFRHTALDYVLQINVLQAKKRHEIL 172
>gnl|CDD|234907 PRK01130, PRK01130, N-acetylmannosamine-6-phosphate 2-epimerase;
Provisional.
Length = 221
Score = 27.0 bits (61), Expect = 8.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 237 PKNAYKVIEAGANALVAGSAVFG----AKDYAEAIK 268
P+ A K +E GA+A+V G A+ K + +A+K
Sbjct: 185 PEQAKKALELGAHAVVVGGAITRPEEITKWFVDALK 220
>gnl|CDD|176987 CHL00046, atpI, ATP synthase CF0 A subunit.
Length = 228
Score = 27.2 bits (61), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 201 GGQSFIESQVKKISDLRRMCL-EKGVNPWI 229
GGQ+F E ++ I DL + + E+ PW+
Sbjct: 53 GGQNFFEYVLEFIRDLAKTQIGEEEYRPWV 82
>gnl|CDD|235237 PRK04169, PRK04169, geranylgeranylglyceryl phosphate synthase-like
protein; Reviewed.
Length = 232
Score = 27.1 bits (61), Expect = 8.7
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 231 VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275
GG+ P+ A +++ AGA+ +V G+ + +D + +K IK + +
Sbjct: 189 YGGGIRSPEQARELMAAGADTIVVGNIIE--EDPKKTVKAIKKAIK 232
>gnl|CDD|184076 PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase;
Provisional.
Length = 368
Score = 27.2 bits (61), Expect = 9.5
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 21/75 (28%)
Query: 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKA-----GVVLNPATSLSAIECVLDVVDL---VL 192
+ VHCE ++ I LN + ++ A A ++++ +S AI +D+ +L L
Sbjct: 135 VALVHCETTTGI-----LNPLDEIAAVAKRHGKRLIVDAMSSFGAIP--IDIAELGIDAL 187
Query: 193 IMSVN------PGFG 201
I S N PGFG
Sbjct: 188 ISSANKCIEGVPGFG 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.386
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,116,375
Number of extensions: 1366324
Number of successful extensions: 1620
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1586
Number of HSP's successfully gapped: 101
Length of query: 281
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 185
Effective length of database: 6,679,618
Effective search space: 1235729330
Effective search space used: 1235729330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)