RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023494
(281 letters)
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin
cycle, oxidative pentose PH pathway; 2.30A {Solanum
tuberosum} SCOP: c.1.2.2
Length = 230
Score = 429 bits (1105), Expect = e-154
Identities = 209/230 (90%), Positives = 222/230 (96%)
Query: 48 ARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVV 107
+RVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVV
Sbjct: 1 SRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVV 60
Query: 108 DALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK 167
D+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAK
Sbjct: 61 DSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAK 120
Query: 168 AGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227
AGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVKKISDLR++C E+G+NP
Sbjct: 121 AGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNP 180
Query: 228 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277
WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIKTSKRP+
Sbjct: 181 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRPE 230
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 418 bits (1078), Expect = e-150
Identities = 151/227 (66%), Positives = 187/227 (82%)
Query: 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 114
+I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T
Sbjct: 2 SKNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT 61
Query: 115 DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 174
LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP
Sbjct: 62 KKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNP 121
Query: 175 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234
+T L +E VL V DL+LIMSVNPGFGGQSFI + KI LR+MC E+G++PWIEVDGG
Sbjct: 122 STPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 181
Query: 235 VGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
+ P N ++V+EAGANA+VAGSAVF A +YAEAI G++ SKRP+
Sbjct: 182 LKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPEPQLA 228
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 390 bits (1005), Expect = e-139
Identities = 100/218 (45%), Positives = 149/218 (68%), Gaps = 2/218 (0%)
Query: 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD 115
S + ++PSIL+A++A ++ +E +++H+D+MDG+FVPNI+ G VV ++R +
Sbjct: 2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSK 61
Query: 116 LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 175
L D HLM+V+PE+ V F +AGADI+++H E ST H+H L +IK G KAGVV+NP
Sbjct: 62 LVFDCHLMVVDPERYVEAFAQAGADIMTIHTE--STRHIHGALQKIKAAGMKAGVVINPG 119
Query: 176 TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
T +A+E +LD+VD VLIM+VNPGFGGQ+FI ++K++ + + EKG++ IEVDGGV
Sbjct: 120 TPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGV 179
Query: 236 GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
K EAGAN VAGS +F A D ++ ++T+
Sbjct: 180 DNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTA 217
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc
genomics, center for structural genomics of infectious
DISE csgid; 2.05A {Francisella tularensis subsp}
Length = 246
Score = 388 bits (999), Expect = e-138
Identities = 94/228 (41%), Positives = 135/228 (59%), Gaps = 3/228 (1%)
Query: 47 SARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV 106
+ + I ++PSILSA+ A+LG+ VKAV AG D IH DVMD +VPN+T GP+V
Sbjct: 17 NLYFQSNAMKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMV 76
Query: 107 VDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG 165
+ ALR +DVHLM+ + + F KAGA + H E ++ H+ R+L IK G
Sbjct: 77 LKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE--ASEHIDRSLQLIKSFG 134
Query: 166 AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV 225
+AG+ LNPAT + ++ V +D VLIMSVNPGFGGQ FI + + K ++ +
Sbjct: 135 IQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDR 194
Query: 226 NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+ +E+DGGV P N ++ G NA VAGSA+F + Y + I ++
Sbjct: 195 DILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDE 242
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 366 bits (942), Expect = e-129
Identities = 86/223 (38%), Positives = 127/223 (56%), Gaps = 8/223 (3%)
Query: 54 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113
+ + ++PS+LS++FA L + + G DW+H+D+MDG FVPN+TIG V+ +LR
Sbjct: 3 AAAAAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKH 62
Query: 114 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173
T LD HLM+ P V KAGA + H E S + + IK G + GV L
Sbjct: 63 TKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD-NWQELIQSIKAKGMRPGVSLR 121
Query: 174 PATSLSAIECVLDV---VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230
P T + + +++ V+LVL+M+V PGFGGQ F+ ++K+ LR+ + IE
Sbjct: 122 PGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP----SLDIE 177
Query: 231 VDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
VDGG+GP AGAN +VAGS++FGA + E I ++ S
Sbjct: 178 VDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKS 220
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
(beta/alpha)8 barrel, carbohydrate metabolism,
isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
3ct7_A*
Length = 231
Score = 366 bits (942), Expect = e-129
Identities = 67/218 (30%), Positives = 124/218 (56%), Gaps = 4/218 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
+ +SPS++ + K EQ++ ++ + D+ H+D+MDG FVPN+T+ P V ++ + P
Sbjct: 1 MKISPSLMCMDLLKFKEQIEFID-SHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKP 59
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LD HLM+ P+ + +AGAD +++H E + R +++I+ K G++LNP T
Sbjct: 60 LDCHLMVTRPQDYIAQLARAGADFITLHPE-TINGQAFRLIDEIRRHDMKVGLILNPETP 118
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+ A++ + D + +M+V+PGF GQ FI + K+++L+ +G+ IEVDG
Sbjct: 119 VEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQ 178
Query: 238 KNAYKVIEAGANALVAGSAVF--GAKDYAEAIKGIKTS 273
K++ AGA+ + G++ A++ EA + +
Sbjct: 179 ATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQ 216
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE;
1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
Length = 228
Score = 360 bits (926), Expect = e-127
Identities = 84/220 (38%), Positives = 128/220 (58%), Gaps = 8/220 (3%)
Query: 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-- 113
S + PSIL+++ A LG + + +G D++H+DVMDG FVPNIT G VV++LR
Sbjct: 3 SGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLG 62
Query: 114 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173
D D+H+M+ +PEQ V AGA+ + H E +T + + I++ G K G+ +
Sbjct: 63 QDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIK 120
Query: 174 PATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233
P TS+ + + +D+ L+M+V PGFGGQ F+E + K+ LR + IEVDG
Sbjct: 121 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFP----SLDIEVDG 176
Query: 234 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
GVGP +K EAGAN +V+GSA+ ++D I ++
Sbjct: 177 GVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNV 216
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS
epimerase family, structural genomics, joint center for
STR genomics, JCSG; 1.91A {Haemophilus somnus}
Length = 237
Score = 351 bits (903), Expect = e-123
Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 16/231 (6%)
Query: 54 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113
+S ILSAN+ +L E+V + + +H D+ DG+F T+G + +
Sbjct: 10 QLKQQKLSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIKYFP-- 67
Query: 114 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--------- 164
T DVHLM+ + + GA++V++ E T+ +
Sbjct: 68 THCFKDVHLMVRNQLEVAKAVVANGANLVTLQLE--QYHDFALTIEWLAKQKTTYANQVY 125
Query: 165 GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG 224
G L P T +S +E LD +D++ +++++P G + E + ++ + + +
Sbjct: 126 PVLIGACLCPETPISELEPYLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRR 185
Query: 225 VNPWIEVDGGVGPKNAYKVIEAGANA--LVAGSAVFGAKDYAEAIKGIKTS 273
V I +DG + + A + LV+GSA+F + +K K+S
Sbjct: 186 VEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG-ELKTNLKVWKSS 235
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics,
protein structure initiative, PSI; 2.00A {Plasmodium
falciparum} SCOP: c.1.2.2
Length = 227
Score = 343 bits (881), Expect = e-120
Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 13/226 (5%)
Query: 54 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113
I++PS+L++N +KL E+ + +E G +WIH+DVMD FVPN++ GP V++ L+
Sbjct: 2 GTLKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKY 61
Query: 114 T-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTL---NQIKDLGAKAG 169
T + DVHLM+ PE+ VP ++ ++ H E + R + +I+D G
Sbjct: 62 TKSIFFDVHLMVEYPEKYVPLL--KTSNQLTFHFE-ALNEDTERCIQLAKEIRDNNLWCG 118
Query: 170 VVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227
+ + P T + + +LD +++ VL+M+V PGFGGQSF+ + K+S LR+ N
Sbjct: 119 ISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK----NL 174
Query: 228 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
I+VDGG+ + GAN +VAG+++F A+D I ++ S
Sbjct: 175 NIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVS 220
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 122 bits (306), Expect = 6e-34
Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 15/216 (6%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL 122
++ + + L + A G VDV++ V + +G +V+ LR + D +
Sbjct: 9 QVALDHSNLKGAITAAVSVGN---EVDVIEAGTVCLLQVGSELVEVLRSLFPDKIIVADT 65
Query: 123 MIVEPEQRVPD-FIKAGADIVSVHCE--QSSTIHLHRTLNQIKDLGAKAGV-VLNPATSL 178
+ V GAD ++ C + + + I + V + T
Sbjct: 66 KCADAGGTVAKNNAVRGADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYGDWTYD 125
Query: 179 SAIECVLDVVDLVLI-MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
A + + + + S + G+++ E + K+ L + + V GG+
Sbjct: 126 QAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLI------EMGFRVSVTGGLSV 179
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+AG + AK+ A A + K
Sbjct: 180 DTLKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDE 215
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 118 bits (297), Expect = 8e-33
Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 12/212 (5%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL 122
++ + ++ +VD+++ G V+ A++ D + +
Sbjct: 4 QVAIDLLSTEAALELAGKVAE---YVDIIELGTPLIKAEGLSVITAVKKAHPDKIVFADM 60
Query: 123 MIVEPEQRVPD-FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
++ + D KAGAD+V+V + + + + V L +
Sbjct: 61 KTMDAGELEADIAFKAGADLVTVLGS-ADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATR 119
Query: 182 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241
+ + + ++ G Q+ + + + V GGV
Sbjct: 120 AQEVRALG-AKFVEMHAGLDEQAKPGFDLNGLLAAG-----EKARVPFSVAGGVKVATIP 173
Query: 242 KVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
V +AGA VAG A++GA D A A K ++ +
Sbjct: 174 AVQKAGAEVAVAGGAIYGAADPAAAAKELRAA 205
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 118 bits (296), Expect = 2e-32
Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 11/201 (5%)
Query: 77 KAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPD-F 134
A E VD+++ + + G V L+ + + I + + +
Sbjct: 17 SAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMC 76
Query: 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-SAIECVLDVVDLVLI 193
+A AD V+V C + L+ K+ + L + A + + V+
Sbjct: 77 FEANADWVTVIC-CADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVY 135
Query: 194 -MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV 252
S + G ++ E+ + I L + + V GG+ ++ + +
Sbjct: 136 HRSRDAQAAGVAWGEADITAIKRLS------DMGFKVTVTGGLALEDLPLFKGIPIHVFI 189
Query: 253 AGSAVFGAKDYAEAIKGIKTS 273
AG ++ A EA + K S
Sbjct: 190 AGRSIRDAASPVEAARQFKRS 210
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 113 bits (285), Expect = 8e-31
Identities = 31/209 (14%), Positives = 71/209 (33%), Gaps = 14/209 (6%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL 122
++ + L + V +VDV++ + G V LR + L +
Sbjct: 10 QIALDQTNLTDAVAVASNVAS---YVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDM 66
Query: 123 MIVEPEQRV-PDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
+ + +AGAD ++V + + +L + + + ++
Sbjct: 67 KTTDGGAILSRMAFEAGADWITVSAA-AHIATIAACKKVADELNGEIQIEIYGNWTMQDA 125
Query: 182 ECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
+ +D + + S + G + + K+ L + + + GG+ P++
Sbjct: 126 KAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQL------SALGIELSITGGIVPED 179
Query: 240 AYKVIEAGANALVAGSAVFGAKDYAEAIK 268
Y +AG A+ GA+ A
Sbjct: 180 IYLFEGIKTKTFIAGRALAGAEGQQTAAA 208
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 101 bits (254), Expect = 3e-26
Identities = 33/213 (15%), Positives = 77/213 (36%), Gaps = 13/213 (6%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL 122
L+ + L E + ++ VD+++ I G + A++ +
Sbjct: 4 QLALDELTLPEAMVFMDKVV---DDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADA 60
Query: 123 MIVEPEQRVPD-FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSA 180
I++ AGAD V+V + + + + K+ G + V ++ +
Sbjct: 61 KIMDGGHFESQLLFDAGADYVTVLGV-TDVLTIQSCIRAAKEAGKQVVVDMICVDDLPAR 119
Query: 181 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA 240
+ + + +++V+ G Q+ + + + ++ I V GG+ +
Sbjct: 120 VRLLEEAG--ADMLAVHTGTDQQAAGRKPIDDLITMLKVRR----KARIAVAGGISSQTV 173
Query: 241 YKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
G + ++ GSA+ A D A + I
Sbjct: 174 KDYALLGPDVVIVGSAITHAADPAGEARKISQV 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 47/247 (19%), Positives = 71/247 (28%), Gaps = 84/247 (34%)
Query: 61 SP--SILSANFAKLGEQVKAV--ELAGCDWIHVDVMDGR--FVPNITIGP---L--VVDA 109
SP SI + ++ + V L + + +++G V ++ GP L +
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--VS-GPPQSLYGLNLT 392
Query: 110 LRPVTDLP-LDVHLMIVEPEQRVPDFIKAGADIVSV--HCEQSSTIHLHRTLNQI-KDLG 165
LR LD + +R F + + H L + I KDL
Sbjct: 393 LRKAKAPSGLDQSR--IPFSERKLKFSNRFLPV-ASPFHSH-----LLVPASDLINKDL- 443
Query: 166 AKAGVVLNPA--------T-------SLSAIECVLDVVDLVLIMSVN-P----------- 198
K V N T LS +VD ++ + V
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSG-SISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 199 --GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG-GVGPKNAYKVIEAGANALVAGS 255
G GG S + + DG GV VI AG L
Sbjct: 503 DFGPGGASGLGVLTHRN-----------------KDGTGVR------VIVAG--TLDINP 537
Query: 256 AV-FGAK 261
+G K
Sbjct: 538 DDDYGFK 544
Score = 43.9 bits (103), Expect = 4e-05
Identities = 41/201 (20%), Positives = 71/201 (35%), Gaps = 61/201 (30%)
Query: 30 PSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHV 89
P++ F ++Q ++F+K + P+ FA E EL G
Sbjct: 23 PTASFFIASQLQ---------EQFNKI--LPEPT---EGFAADDEPTTPAELVG------ 62
Query: 90 DVMDGRFVPNITIGPLVVDALRPVTDLPLD--VHLMIVEPEQRVPDFIKAGADI--VSVH 145
+F +G V + P D ++L + E E +++ G DI ++
Sbjct: 63 -----KF-----LG-YVSSLVEPSKVGQFDQVLNLCLTEFEN---CYLE-GNDIHALAAK 107
Query: 146 CEQSSTIHLHRTLNQIKDLGAKAGVVLN---PATSLSAIECVLDVVDLVLIMSVNPG--- 199
Q + L +T IK+ A ++ S SA L +V G
Sbjct: 108 LLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSA-----------LFRAVGEGNAQ 155
Query: 200 ----FGGQSFIESQVKKISDL 216
FGGQ + +++ DL
Sbjct: 156 LVAIFGGQGNTDDYFEELRDL 176
Score = 42.3 bits (99), Expect = 1e-04
Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 75/183 (40%)
Query: 154 LHRTLN-Q----------IKDLGAKAGVVLNPAT----SL---SAIEC---VL---DVVD 189
L T Q +DL +K G++ AT SL +A+ V+ +V+
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSK-GLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 190 LV---------------------LIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG---- 224
+V ++++NPG SF + ++ + + R+ G
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE--RVGKRTGWLVE 1842
Query: 225 -VNPWIEVDGGVGPKNA----YKVIEAG-ANALVAGSAVFGAKDYAEAIKGIKTSKRPQA 278
VN N Y V AG AL + V ++ + ++ I + ++
Sbjct: 1843 IVN-----------YNVENQQY-VA-AGDLRALDTVTNVL---NFIK-LQKIDIIELQKS 1885
Query: 279 VAV 281
+++
Sbjct: 1886 LSL 1888
Score = 37.7 bits (87), Expect = 0.004
Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 66/192 (34%)
Query: 10 TTQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANF 69
T ++ GFT G + S L Q +V A A I + S +F
Sbjct: 252 TAKLLGFTPGELR--------SYLKGATGHSQGLVTAVA---------IAETDS--WESF 292
Query: 70 AKLGEQVKAVELAGCDWIHVDVMDG----RFVPNITIGPLVV-DALR-----P-----VT 114
KA+ + +I G PN ++ P ++ D+L P ++
Sbjct: 293 FVSV--RKAITVLF--FI------GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 115 DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTL-NQIKDLGAKAGVVLN 173
+L + +V D++ + H + + +L N GAK VV
Sbjct: 343 NLTQE----------QVQDYVNK----TNSHLPAGKQVEI--SLVN-----GAKNLVVSG 381
Query: 174 PATSLSAIECVL 185
P SL + L
Sbjct: 382 PPQSLYGLNLTL 393
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 42.6 bits (100), Expect = 5e-05
Identities = 30/208 (14%), Positives = 66/208 (31%), Gaps = 31/208 (14%)
Query: 77 KAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL---------DVHLMIVEP 127
A G I + + A++ DLP+ + I
Sbjct: 30 LAAYEGGAVGIRAN------------TKEDILAIKETVDLPVIGIVKRDYDHSDVFITAT 77
Query: 128 EQRVPDFIKAGADIVSVHC--EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL 185
+ V + I++ +++++ +Q L ++ I+ ++ + AT A
Sbjct: 78 SKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAAR 137
Query: 186 DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI 244
D + Q + Q L+ + I +G V P +V+
Sbjct: 138 LGFDYIGTTLHGYTSYTQGQLLYQND-FQFLKDVLQSVDA-KVI-AEGNVITPDMYKRVM 194
Query: 245 EAGANALVAGSAVFG----AKDYAEAIK 268
+ G + V G A+ K + + ++
Sbjct: 195 DLGVHCSVVGGAITRPKEITKRFVQVME 222
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics,
southeast collaboratory for structural genomics,
hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP:
c.1.3.1
Length = 215
Score = 39.5 bits (93), Expect = 5e-04
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
GG+ NA +V++ G + + SAV GA+D +A + ++
Sbjct: 169 GGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELR 207
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 39.3 bits (91), Expect = 7e-04
Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 36/207 (17%)
Query: 77 KAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL---------DVHLMIVEP 127
A E AG + ++ G + R + +P+ + + I
Sbjct: 43 LAAEQAGAVAVRIE------------GIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPF 90
Query: 128 EQRVPDFIKAGADIVSVHCEQSST-IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD 186
V +AGA I++V + + L +I ++ + C
Sbjct: 91 LDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADC--SSVDDGLACQRL 148
Query: 187 VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 245
D++ G + ++ + L + + G I +G P A + I
Sbjct: 149 GADII-----GTTMSGYTTPDTPEEPDLPLVKALHDAGC-RVI-AEGRYNSPALAAEAIR 201
Query: 246 AGANALVAGSAVFG----AKDYAEAIK 268
GA A+ GSA+ Y +A+K
Sbjct: 202 YGAWAVTVGSAITRLEHICGWYNDALK 228
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural
genomics, PSI, protein structure initiative; 1.70A
{Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Length = 256
Score = 38.3 bits (88), Expect = 0.002
Identities = 22/200 (11%), Positives = 60/200 (30%), Gaps = 26/200 (13%)
Query: 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIV-------- 125
E + G D + + +T V+ ++R +P+ +
Sbjct: 12 ECALTAQQNGADRVEL--CAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSD 69
Query: 126 -EPEQRVPD---FIKAGAD-IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 180
E + D + G +V+ + + + R + G T A
Sbjct: 70 GEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPL------AVTFHRA 123
Query: 181 IECVLDVVDLVLIMSVNPGFGG---QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+ + + + ++ G ++ +S + + + + GV
Sbjct: 124 FDMCANPLYTLNNLA-ELGIARVLTSGQKSDALQGLSKIMELIAHRDAPIIM-AGAGVRA 181
Query: 238 KNAYKVIEAGANALVAGSAV 257
+N + ++AG + + +
Sbjct: 182 ENLHHFLDAGVLEVHSSAGA 201
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM
barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP:
c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A*
3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Length = 227
Score = 37.2 bits (87), Expect = 0.003
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 216 LRRMCLEKGVNPW--IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
+ + + P I GG+ NA VI+AGA+ + SA+ A+D A + +
Sbjct: 163 IEAVRRQGISIPIVGI---GGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFR 217
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus
subtilis} PDB: 3qh2_A*
Length = 221
Score = 37.2 bits (87), Expect = 0.003
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
GG+ P V +AGA+ + S +F + + EA +
Sbjct: 171 GGMTPDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYS 209
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 36.9 bits (85), Expect = 0.004
Identities = 39/211 (18%), Positives = 68/211 (32%), Gaps = 44/211 (20%)
Query: 77 KAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL---------DVHLMIVEP 127
+A AG + G + +RP +P+ + I
Sbjct: 43 QAAASAGAVAV------------RIEGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPY 90
Query: 128 EQRVPDFIKAGADIVSVHCEQSSTIHLH-----RTLNQIKDLGAKAGVVLNPATSLSAIE 182
Q V +AGADI++ + L +I+ G A + +T I
Sbjct: 91 LQDVDALAQAGADIIAFDA----SFRSRPVDIDSLLTRIRLHGLLAMA--DCSTVNEGIS 144
Query: 183 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY 241
C ++ + G + + V+ + G I +G P A
Sbjct: 145 CHQKGIEFI-----GTTLSGYTGPITPVEPDLAMVTQLSHAGC-RVI-AEGRYNTPALAA 197
Query: 242 KVIEAGANALVAGSAVFG----AKDYAEAIK 268
IE GA A+ GSA+ + ++ A+K
Sbjct: 198 NAIEHGAWAVTVGSAITRIEHICQWFSHAVK 228
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 36.9 bits (86), Expect = 0.004
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
GG+ + V++AGA +V A+ A D A + ++
Sbjct: 198 GGINAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLR 236
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.005
Identities = 29/170 (17%), Positives = 53/170 (31%), Gaps = 40/170 (23%)
Query: 102 IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG------ADIVSVHCEQSSTIHLH 155
I + DA V + D + V D K+ I+ S T+ L
Sbjct: 21 ILSVFEDAF--VDNF--DC--------KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 156 RTLNQIKDLGAKAGV--VLNP-----ATSLSAIECVLDVVDLVLIMS-VNPGF-GGQSFI 206
TL ++ + V VL + + E + + + + + Q F
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 207 ESQV---KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVA 253
+ V + LR+ LE + +DG +G +G +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG---------SGKTWVAL 168
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 36.5 bits (84), Expect = 0.005
Identities = 33/209 (15%), Positives = 71/209 (33%), Gaps = 35/209 (16%)
Query: 77 KAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL---------DVHLMIVEP 127
KA + AG I + + ++ +TDLP+ I
Sbjct: 43 KAAQEAGAVGIRAN------------SVRDIKEIQAITDLPIIGIIKKDYPPQEPFITAT 90
Query: 128 EQRVPDFIKAGADIVSVHC---EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV 184
V ++++ C ++ + + + Q+K+ ++ + +T +
Sbjct: 91 MTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAH 150
Query: 185 LDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKV 243
+D V G + + L + G+ I +G + P+ A K+
Sbjct: 151 QAGIDFVGTTLS----GYTPYSRQEAGPDVALIEALCKAGI-AVI-AEGKIHSPEEAKKI 204
Query: 244 IEAGANALVAGSAVFG----AKDYAEAIK 268
+ G +V G A+ A+ + EA+K
Sbjct: 205 NDLGVAGIVVGGAITRPKEIAERFIEALK 233
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis,
orotidine 5'-phosphate decarboxylas (ompdecase),
structural genomics; 1.60A {Pyrococcus horikoshii} SCOP:
c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Length = 208
Score = 36.1 bits (84), Expect = 0.005
Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 13/141 (9%)
Query: 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIM 194
AGAD V VH ++ +K+LG VV + A+E + + D + +
Sbjct: 75 FGAGADYVIVHTFVGR-----DSVMAVKELGEIIMVVEM--SHPGALEFINPLTDRFIEV 127
Query: 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA--YKVIEAGANALV 252
+ G ++ ++I +R I G +G + ++AGA+ ++
Sbjct: 128 ANEIEPFGVIAPGTRPERIGYIRDRL---KEGIKILAPG-IGAQGGKAKDAVKAGADYII 183
Query: 253 AGSAVFGAKDYAEAIKGIKTS 273
G A++ A + EA K I
Sbjct: 184 VGRAIYNAPNPREAAKAIYDE 204
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 210
Score = 35.0 bits (81), Expect = 0.016
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKD------YAEAIKGIKTSKR 275
GG+ N ++ + G V ++ D Y I+ K K+
Sbjct: 151 GGINEDNLLEIKDFGFGGAVVLGDLWNKFDACLDQNYLAVIEHFKKLKK 199
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal
phosphate, structural genomi NPPSFA; 2.30A
{Methanocaldococcus jannaschii}
Length = 330
Score = 35.2 bits (80), Expect = 0.020
Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 5/118 (4%)
Query: 156 RTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215
L ++ D + V + + L + N + + + +
Sbjct: 171 AQLQRMTDEEVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYE 230
Query: 216 LRRMCLEKGVNPWIE-VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 268
+ + G P + GGV P +A +++ G++ + GS +F +++ A AI
Sbjct: 231 VLLEVKKLGRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIV 288
>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel,
unusual catalysis, disease mutati glycosyltransferase,
lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo
sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A*
3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A*
3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A*
3l0n_A* ...
Length = 260
Score = 34.2 bits (78), Expect = 0.032
Identities = 23/160 (14%), Positives = 53/160 (33%), Gaps = 14/160 (8%)
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
D+ + + + I + AD+V+ H S + + ++++G
Sbjct: 96 ADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGV-----VKGLQEVGLPLHRGCLLIAE 150
Query: 178 LSAIECVL--DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG-- 233
+S+ + D + M+ S + + L GV D
Sbjct: 151 MSSTGSLATGDYTRAAVRMAEE-HSEFVVGFISGSRVSMKPEFLHLTPGVQLEAGGDNLG 209
Query: 234 --GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
P+ + + G++ ++ G + A D EA + +
Sbjct: 210 QQYNSPQEV--IGKRGSDIIIVGRGIISAADRLEAAEMYR 247
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain,
orotidine 5'-monophosphate decarboxylase, human,
5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens}
PDB: 3bvj_A* 3mw7_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Length = 312
Score = 33.8 bits (77), Expect = 0.043
Identities = 24/143 (16%), Positives = 50/143 (34%), Gaps = 14/143 (9%)
Query: 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL--DVVDLVL 192
I + AD+V+ H S + + ++++G +S+ + D +
Sbjct: 165 IASWADLVNAHVVPGSGV-----VKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAV 219
Query: 193 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG----VGPKNAYKVIEAGA 248
M+ FI S + + L GV D P+ + + G+
Sbjct: 220 RMAEEHSEFVVGFI-SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEV--IGKRGS 276
Query: 249 NALVAGSAVFGAKDYAEAIKGIK 271
+ ++ G + A D EA + +
Sbjct: 277 DIIIVGRGIISAADRLEAAEMYR 299
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural
genomics, PSI, protein structure initiative; 2.30A
{Streptococcus agalactiae}
Length = 224
Score = 33.6 bits (76), Expect = 0.047
Identities = 31/207 (14%), Positives = 65/207 (31%), Gaps = 32/207 (15%)
Query: 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGP-LVVDALRPVTDLPLDVHLMI-------- 124
+ ++ A V++ D V T ++ +A + + + + V +MI
Sbjct: 12 TDLTRLDKAIIS--RVELCDNLAVGGTTPSYGVIKEANQYLHEKGISVAVMIRPRGGNFV 69
Query: 125 ---VEPEQRVPD---FIKAGAD-IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
+E D ++ +D +V ++ I + P
Sbjct: 70 YNDLELRIMEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQGL------PLVF 123
Query: 178 LSAIECVLDVV-DLVLIMSVNPGF-----GGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231
A + + + V GF G S E ++ I ++ + I V
Sbjct: 124 HMAFDVIPKSDQKKSIDQLVALGFTRILLHGSSNGEPIIENIKHIKALVEYANNRIEIMV 183
Query: 232 DGGVGPKNAYKVIEA-GANALVAGSAV 257
GGV +N + + G G+ +
Sbjct: 184 GGGVTAENYQYICQETGVKQ-AHGTRI 209
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG,
lyase, PSI-2, protein structure initiative; HET: MSE;
1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Length = 275
Score = 33.1 bits (75), Expect = 0.080
Identities = 35/234 (14%), Positives = 71/234 (30%), Gaps = 22/234 (9%)
Query: 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 121
+ A E K + A ++ V V+ + P + + A D + +
Sbjct: 35 GRVALNVLANNIENAKDIFEAAEGYVVVGVLSKDY-PTVEEAVTAMKAYGKEIDDAVSIG 93
Query: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQSST---------IHLHRTLNQIKDLGAKAGVVL 172
L + Q + H Q +N + K G V
Sbjct: 94 LGAGDNRQAA-VVAEIAKHYPGSHINQVFPSVGATRANLGEKDSWINSLVSPTGKVGYVN 152
Query: 173 NPATSLSAIECVLDVVDL--VLIMSVNPGFGGQSFI----ESQVKKISDLRRMCLEKGVN 226
+SA +V + + + + G + + ++ + + C E+G
Sbjct: 153 ISTGPISAAGEEKAIVPIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGF- 211
Query: 227 PWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVA 280
+E GG+ +N ++ AL A Y+ I + + +AV
Sbjct: 212 -ALEPTGGIDKENFETIVRI---ALEANVEQVIPHVYSSIIDKETGNTKVEAVR 261
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 32.5 bits (74), Expect = 0.098
Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 21/144 (14%)
Query: 124 IVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC 183
+++PEQ V + G ++ S I G + +A+E
Sbjct: 67 VLKPEQ-VDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCPG-----CATATEAFTALEA 120
Query: 184 VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV 243
+ + FG Q + SD+ + GGV P+N +
Sbjct: 121 GAQALKIFPS----SAFGPQYIKALKAVLPSDIAVFAV-----------GGVTPENLAQW 165
Query: 244 IEAGANALVAGSAVFGAKDYAEAI 267
I+AG GS ++ A E
Sbjct: 166 IDAGCAGAGLGSDLYRAGQSVERT 189
>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A
{Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A*
3gdr_A* 1dqw_A 1dqx_A*
Length = 267
Score = 32.8 bits (74), Expect = 0.11
Identities = 32/233 (13%), Positives = 73/233 (31%), Gaps = 25/233 (10%)
Query: 55 KSDIIVS---PSILSA-NFA-KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDA 109
++++ S + LG ++ ++ HVD++ F T+ PL +
Sbjct: 29 QTNLCASLDVRTTKELLELVEALGPKICLLK------THVDILT-DFSMEGTVKPLKALS 81
Query: 110 LRPVTDLPLDVHL-----MIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL 164
+ L D + I ADI + H I + +++
Sbjct: 82 AKYNFLLFEDRRFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGI-VSGLKQAAEEV 140
Query: 165 GAKAGVVLNPATSLSAIE--CVLDVVDLVLIMSVNPGFGGQSFI--ESQVKKISDLRRMC 220
+ +L LS + + ++ + FI + +
Sbjct: 141 TKEPRGLL-MLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLI 199
Query: 221 LEKGVNPWIEVDG-GVGPKNAYKVIEAGANALVAGSAVFG-AKDYAEAIKGIK 271
+ GV + D G + V+ G++ ++ G +F +D + +
Sbjct: 200 MTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYR 252
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 32.5 bits (73), Expect = 0.11
Identities = 28/234 (11%), Positives = 66/234 (28%), Gaps = 34/234 (14%)
Query: 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEP 127
+ E+ + G + + D + V A++ T LP+ ++
Sbjct: 51 PVTEAVEKAAELTRLGFAAVLLASTDY--ESFESHMEPYVAAVKAATPLPV-----VLHF 103
Query: 128 EQRVPD--FIKAGAD---------------IVSVHCEQSSTIHLHRTLNQIKDLGAKAGV 170
R + GAD + E + + +L +
Sbjct: 104 PPRPGAGFPVVRGADALLLPALLGSGDDYFVWKSFLETLAAFPGRIPREEWPELLLTVAL 163
Query: 171 VLNP----ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI--ESQVKKIS--DLRRMCLE 222
L + + + G + S+ + + +R
Sbjct: 164 TFGEDPRTGDLLGTVPVSTASTEEIDRYLHVARAFGFHMVYLYSRNEHVPPEVVRHFRKG 223
Query: 223 KGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275
G + + V G V + + +++GA+ + A+ D+ A+ I +
Sbjct: 224 LGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQ-PDWRSALAEIAGRRP 276
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase;
1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Length = 205
Score = 32.0 bits (73), Expect = 0.15
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 223 KGVNPWIEV--DGGVGPKNAYKVIEAGANALVAGSAVFG---------AKDYAEAIKGIK 271
KG P ++ GGV N + +AG A+ GSA+ AK + E I+G
Sbjct: 145 KGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGCT 204
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum
cofactor, structural genomics, center for structural
genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm
1728}
Length = 136
Score = 31.1 bits (70), Expect = 0.17
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 220 CLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
+EK NP + G ++ GANALV G+ + +
Sbjct: 52 LIEKYSNPALNATAARGVFMLKSALDHGANALVLSE--IGSPGFNFIKNKMD 101
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Length = 361
Score = 31.1 bits (71), Expect = 0.35
Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 15/113 (13%)
Query: 35 FTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDG 94
++ + + K K + VS ++ +A+ AG D+ VDV
Sbjct: 68 MGALHRFMTIEENIQEFKKCKGPVFVSVGCTENEL----QRAEALRDAGADFFCVDVAHA 123
Query: 95 RFVPNITIGPLVVDALRPVTDLPLDVHLM---IVEPEQRVPDFIKAGADIVSV 144
V L+ + L +M + GADI+
Sbjct: 124 H-----AKY--VGKTLKSLRQLLGSRCIMAGNVATYAG-ADYLASCGADIIKA 168
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 30.6 bits (69), Expect = 0.45
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 265
GG+ P N + G+ + K
Sbjct: 181 GGITPSNIDNYLAIPQVLACGGTWMVDKKLVTN 213
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 30.2 bits (68), Expect = 0.59
Identities = 7/33 (21%), Positives = 9/33 (27%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 265
GG+G N + GS K
Sbjct: 164 GGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQS 196
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 30.2 bits (68), Expect = 0.79
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 34/157 (21%)
Query: 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK--------DLGAKAGVVLNPATSLSA 180
+ P IKAGAD++ + S H++ + D+ AG V + T+L
Sbjct: 169 EIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIAGGVNDYTTALHM 228
Query: 181 IECVLDVV---------DLVLIMSVNPGFGGQSFIESQVKKISDL---RRMCLEKGVNPW 228
+ + L L M V S I+D+ RR L++ +
Sbjct: 229 MRTGAVGIIVGGGENTNSLALGMEV-----------SMATAIADVAAARRDYLDETGGRY 277
Query: 229 IEV--DGGVG-PKNAYKVIEAGANALVAGSAVFGAKD 262
+ + DG + + K I GA+A+V GS + A++
Sbjct: 278 VHIIADGSIENSGDVVKAIACGADAVVLGSPLARAEE 314
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 29.8 bits (67), Expect = 0.79
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 265
GG+ P N + + + GS + A
Sbjct: 163 GGISPANYRDYLALKSVLCIGGSWLVPADALEA 195
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET:
U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Length = 239
Score = 29.5 bits (67), Expect = 0.97
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
P A E G++A+V G ++ A+D +A K ++
Sbjct: 200 PAIA---REKGSSAIVVGRSITKAEDPVKAYKAVRLE 233
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 29.4 bits (66), Expect = 1.0
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 265
GG+ N + + GS + +K E
Sbjct: 166 GGISKDNYKEYLGLPNVICAGGSWLTESKLLIE 198
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase
structure, B enzymes, Zn2+ binding site, TIM-barrel
fold, lyase; 1.70A {Vibrio cholerae}
Length = 464
Score = 29.5 bits (67), Expect = 1.2
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 24/81 (29%)
Query: 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH------------ 121
+ + + G D I + M G P +V L+ D+ L +H
Sbjct: 162 DVAQQLAELGVDSIALKDMAGILTPYAAE--ELVSTLKKQVDVELHLHCHSTAGLADMTL 219
Query: 122 LMIVEPEQRVPDFIKAGADIV 142
L +E AG D V
Sbjct: 220 LKAIE----------AGVDRV 230
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus} PDB: 2yw4_A
Length = 207
Score = 29.1 bits (65), Expect = 1.3
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 223 KGVNPWIEV--DGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEA 266
V P + GG+ ++ V GS + +
Sbjct: 146 AEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLL-QGNLEAV 190
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate,
beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Length = 225
Score = 28.7 bits (64), Expect = 2.0
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAE 265
GGV P N + V + + +
Sbjct: 173 GGVNPANVRNYMALPNVMCVGTTWMLDSSWIKN 205
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 28.7 bits (65), Expect = 2.1
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 19/99 (19%)
Query: 65 LSANFAKLGEQVKAVELAGCDWI---------HVDVMDGRFVPNITIGPLVVDALRP--- 112
LS N + KAVE AG D + D+ + + G L A++P
Sbjct: 171 LSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVAL 230
Query: 113 --VTDLPLDVHLMI-----VEPEQRVPDFIKAGADIVSV 144
+ + DV + I V Q V + AGA V+V
Sbjct: 231 KLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAV 269
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer,
structural genomics, PSI-2, protein structure
initiative; 1.71A {Bifidobacterium adolescentis
ATCC15703}
Length = 282
Score = 28.4 bits (64), Expect = 2.7
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 244 IEAGANALVA-GSAVFGAKDYAEA 266
I G+ +V G+A+FG + + E
Sbjct: 254 IAEGST-IVRVGTAIFGERAFIEG 276
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural
genomics, protein structure initiative, PSI; 2.90A
{Pseudomonas aeruginosa} SCOP: c.1.31.1
Length = 265
Score = 28.0 bits (63), Expect = 3.1
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 231 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 268
VD GVG +A +E G A++ +A+ AKD AEA+K
Sbjct: 192 VDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMK 233
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein
structure initiative, PSI, NESG, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.1.31.1 PDB: 1tyg_A
Length = 264
Score = 27.9 bits (63), Expect = 3.9
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 231 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 268
VD G+G PK+A +E GA+ ++ +AV GA D A A+K
Sbjct: 183 VDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMK 224
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG,
thermus thermophilus HB8, structural genomics, NPPSFA;
2.30A {Thermus thermophilus}
Length = 268
Score = 27.6 bits (62), Expect = 4.4
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 231 VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD---YAEAIK 268
VD G+G P +A +V+E G +A++ +A+ A+D AEA +
Sbjct: 183 VDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFR 224
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif,
metal-binding site, polymorphism, metal binding protein;
2.50A {Homo sapiens}
Length = 287
Score = 27.4 bits (60), Expect = 4.6
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 12/123 (9%)
Query: 134 FIKAGAD-IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL 192
GAD +V + I ++ + P T A + V D + L
Sbjct: 120 AKLYGADGLVFGALTEDGHIDKELCMSLMAICRPL------PVTFHRAFDMVHDPMA-AL 172
Query: 193 IMSVNPGFGG---QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGA 248
+ GF S ++ + ++R+ + + GG+ +N +++E +GA
Sbjct: 173 ETLLTLGFERVLTSGCDSSALEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILEGSGA 232
Query: 249 NAL 251
Sbjct: 233 TEF 235
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics,
PSI-biology, protei structure initiative; HET: MES;
1.47A {Escherichia coli} PDB: 1w8g_A*
Length = 245
Score = 27.5 bits (62), Expect = 4.6
Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Query: 244 IEAGANALVA-GSAVFGAKDYA 264
I AG+ +VA G+A+FGA+DY+
Sbjct: 213 IAAGST-MVAIGTAIFGARDYS 233
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, enterococcus faecalis V583, PSI, protein
structure initiative; HET: MSE; 2.26A {Enterococcus
faecalis} SCOP: c.77.1.4
Length = 336
Score = 27.5 bits (62), Expect = 4.8
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 86 WIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145
I VD M G P + V+ A + D P D+ + E + +I +I +H
Sbjct: 5 KIAVDAMGGDNAPQAIV-EGVMLAKQ---DFP-DIEFQLYGKEAEIKKYITDEKNITIIH 59
Query: 146 CEQ 148
++
Sbjct: 60 TDE 62
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis,
eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida
glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Length = 540
Score = 27.9 bits (62), Expect = 5.0
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 233 GGVGPKNAYKVI--------EAGANALVAGSAVFGAKDYAEAIKGIKT 272
GG+ P N +V+ + + + S + + D A++ K ++
Sbjct: 180 GGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRG 227
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA
replication, RTH, RAD27, DNA repair; 2.00A
{Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2
PDB: 1a77_A
Length = 326
Score = 27.5 bits (61), Expect = 5.1
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 14/38 (36%)
Query: 214 SDLRRMC-------LEKGVNPWIEVDGGVGPKNAYKVI 244
DL + GV G+G K AY+++
Sbjct: 212 DDLIDIAIFMGTDYNPGGVK-------GIGFKRAYELV 242
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1
d.17.6.4 PDB: 2cx1_A* 1zs7_A
Length = 187
Score = 27.1 bits (60), Expect = 5.8
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 5/55 (9%)
Query: 227 PWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
+ VD G A + GA+ ++ G + + V V
Sbjct: 93 GVVLVDKG-----AAIALAKGAHLMIPGVVGVEGSFTRGDVVAALYHETRTPVMV 142
>1x9l_A CUI-DR1885; copper binding protein, solution ST holo-form,
structural proteomics in europe, spine, structur
genomics; NMR {Deinococcus radiodurans} SCOP: b.2.10.1
PDB: 2jqa_A
Length = 149
Score = 26.7 bits (58), Expect = 6.7
Identities = 7/66 (10%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 68 NFAKLGEQVKAVELAGCDW--IHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIV 125
N + ++ + G + L + A +T H+M++
Sbjct: 53 NKSDQPIKLVGAATPLATSPMLMTTTHSGGMAGMKMVPWLTIPARGTLTLQRDGDHVMLM 112
Query: 126 EPEQRV 131
++ +
Sbjct: 113 GLKRPL 118
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 27.2 bits (61), Expect = 6.8
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 156 RTLNQIKDLGAKAG---VVLNPATSLSAIECV 184
R+L ++ +L A+AG +P + +S +E
Sbjct: 299 RSLAELGELAAQAGLAVRAAHPISYVSIVEMT 330
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A
{Thermoproteus tenax} SCOP: c.1.1.1
Length = 226
Score = 26.8 bits (60), Expect = 6.8
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 233 GGVGPKNA-YKVIEAGANALVAGSAVFGAKDYAEAIK 268
G+ + + G ++ SA AKD I
Sbjct: 180 AGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIV 216
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529,
structural genomics, NEW YORK S genomics research
consortium; 2.19A {Lactobacillus acidophilus}
Length = 259
Score = 26.8 bits (60), Expect = 7.3
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
PK A E G++A+V G + A D A + IK
Sbjct: 202 PKMA---KEWGSSAIVVGRPITLASDPKAAYEAIKKE 235
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics,
infectious diseases; 1.77A {Vibrio cholerae o1 biovar el
tor} PDB: 3uwq_A*
Length = 255
Score = 26.8 bits (60), Expect = 7.9
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
P A I +G++ LV G + A ++ I +S
Sbjct: 220 PAQA---IASGSDYLVIGRPITQAAHPEVVLEEINSS 253
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A
{Pyrococcus woesei} SCOP: c.1.1.1
Length = 225
Score = 26.5 bits (59), Expect = 8.4
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 233 GGVGPKNA-YKVIEAGANALVAGSAVFGAKDYAEAIKGI 270
G+ K IE G ++ S V AKD +AI +
Sbjct: 183 AGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDL 221
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 26.8 bits (60), Expect = 9.0
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 200 FGGQSFIESQVKKISDLRRM---CLEKGVNPWIEV 231
G + S + + + M C EKG++ IEV
Sbjct: 290 LGRKVITGSFIGSMKETEEMLEFCKEKGLSSIIEV 324
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel,
protein-inhibitor complex, homodimer, lyase; HET: BMQ;
2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A*
1l2u_A
Length = 245
Score = 26.4 bits (59), Expect = 9.1
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
P+ A + AG + +V G V + D A+ +K I S
Sbjct: 207 PEQA---LSAGVDYMVIGRPVTQSVDPAQTLKAINAS 240
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 26.8 bits (60), Expect = 9.5
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 199 GFGGQSFIESQVKKISDLRRM---CLEKGVNPWIEV 231
G + S + I + + M ++ + P I++
Sbjct: 282 HLGNRKVYGSLIGGIKETQEMVDFSIKHNIYPEIDL 317
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose;
dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB:
2o2d_A* 1q50_A
Length = 613
Score = 26.9 bits (60), Expect = 9.5
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 97 VPNITI-----GPL-VVDALRPVTDLPLDVH 121
V NI I GP+ +AL+P + L +H
Sbjct: 200 VVNIGIGGSDLGPVMATEALKPFSQRDLSLH 230
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines,
nucleosides, nucleotides, lyase; 2.00A {Coxiella
burnetii}
Length = 239
Score = 26.4 bits (59), Expect = 9.7
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
P+ A I+AG++ LV G + + D +A++ I
Sbjct: 202 PRAA---IQAGSDYLVIGRPITQSTDPLKALEAIDKD 235
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural
genomics, NPPSFA, national project on structural and
functional analyses; HET: C5P; 2.20A {Geobacillus
kaustophilus} PDB: 2yyt_A*
Length = 246
Score = 26.4 bits (59), Expect = 9.7
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
P+ A G++ +V G ++ A D ++
Sbjct: 201 PRKA---RALGSDYIVIGRSLTRAADPLRTYARLQHE 234
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center
for structural genomics of infec diseases (csgid),
TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Length = 303
Score = 26.5 bits (59), Expect = 9.7
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
A E ++ +V G ++ ++ + I
Sbjct: 216 LAMA---RENLSDYIVVGRPIYKNENPRAVCEKILNK 249
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.386
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,298,816
Number of extensions: 271522
Number of successful extensions: 861
Number of sequences better than 10.0: 1
Number of HSP's gapped: 816
Number of HSP's successfully gapped: 90
Length of query: 281
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 189
Effective length of database: 4,133,061
Effective search space: 781148529
Effective search space used: 781148529
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)